Query 009415
Match_columns 535
No_of_seqs 247 out of 1307
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 12:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2543 Origin recognition com 100.0 4.4E-88 9.5E-93 674.0 28.7 430 55-535 3-438 (438)
2 PF14630 ORC5_C: Origin recogn 100.0 3.5E-62 7.6E-67 490.9 19.5 259 250-533 1-271 (271)
3 COG1474 CDC6 Cdc6-related prot 99.9 5.2E-24 1.1E-28 221.7 16.2 190 45-268 3-203 (366)
4 PTZ00112 origin recognition co 99.9 6.8E-22 1.5E-26 217.0 21.4 184 54-269 751-950 (1164)
5 TIGR02928 orc1/cdc6 family rep 99.9 3.2E-21 7E-26 202.1 20.0 188 52-268 9-212 (365)
6 PRK00411 cdc6 cell division co 99.9 3.8E-21 8.2E-26 203.8 20.1 194 45-268 16-220 (394)
7 KOG1514 Origin recognition com 99.8 1.5E-20 3.4E-25 201.4 16.4 181 53-270 391-591 (767)
8 KOG2227 Pre-initiation complex 99.8 2E-19 4.2E-24 185.5 16.6 178 57-268 149-338 (529)
9 PRK14956 DNA polymerase III su 99.3 5.1E-11 1.1E-15 127.1 13.5 178 46-268 10-193 (484)
10 PF13401 AAA_22: AAA domain; P 99.2 4.9E-11 1.1E-15 106.1 10.5 117 81-236 4-128 (131)
11 COG2256 MGS1 ATPase related to 99.2 1.4E-10 3E-15 118.9 14.8 157 43-266 13-174 (436)
12 PRK07003 DNA polymerase III su 99.2 6.6E-11 1.4E-15 130.9 12.2 177 47-268 9-191 (830)
13 PF05496 RuvB_N: Holliday junc 99.2 9.5E-11 2.1E-15 112.8 10.9 159 44-268 14-192 (233)
14 PRK00080 ruvB Holliday junctio 99.2 2.7E-10 5.9E-15 118.0 14.9 153 49-267 20-192 (328)
15 PRK03992 proteasome-activating 99.2 2.2E-10 4.8E-15 121.3 13.9 161 58-268 131-315 (389)
16 KOG0989 Replication factor C, 99.2 1.5E-10 3.3E-15 114.7 11.5 173 45-269 27-202 (346)
17 PRK12402 replication factor C 99.2 3.8E-10 8.2E-15 116.9 14.9 213 49-301 10-229 (337)
18 TIGR00635 ruvB Holliday juncti 99.2 2.1E-10 4.6E-15 117.4 12.4 56 58-113 4-62 (305)
19 PLN03025 replication factor C 99.2 5.2E-10 1.1E-14 115.5 14.7 188 48-302 7-204 (319)
20 PRK14962 DNA polymerase III su 99.1 2.1E-10 4.6E-15 123.8 12.2 214 44-304 4-224 (472)
21 PF01637 Arch_ATPase: Archaeal 99.1 1.6E-10 3.4E-15 112.4 9.7 183 60-266 1-202 (234)
22 PRK14961 DNA polymerase III su 99.1 3.4E-10 7.4E-15 118.9 12.8 212 48-303 10-225 (363)
23 PRK04195 replication factor C 99.1 7.3E-10 1.6E-14 120.7 15.7 162 49-267 9-172 (482)
24 COG1222 RPT1 ATP-dependent 26S 99.1 1.2E-09 2.6E-14 110.5 15.6 161 58-267 151-334 (406)
25 PRK14086 dnaA chromosomal repl 99.1 1.8E-09 4E-14 118.3 17.7 166 81-303 314-493 (617)
26 PF13191 AAA_16: AAA ATPase do 99.1 9.2E-11 2E-15 110.4 6.4 75 59-133 1-84 (185)
27 PRK00440 rfc replication facto 99.1 1.5E-09 3.3E-14 111.4 15.9 163 41-268 2-174 (319)
28 PF00308 Bac_DnaA: Bacterial d 99.1 1.1E-09 2.5E-14 106.9 13.3 166 80-302 33-212 (219)
29 PRK00149 dnaA chromosomal repl 99.1 1.4E-09 3.1E-14 117.5 15.3 167 80-303 147-327 (450)
30 PF00004 AAA: ATPase family as 99.1 3.3E-10 7.1E-15 100.4 8.5 104 84-234 1-112 (132)
31 TIGR00362 DnaA chromosomal rep 99.1 2.8E-09 6E-14 113.7 17.0 166 81-303 136-315 (405)
32 PTZ00361 26 proteosome regulat 99.1 1.6E-09 3.4E-14 115.6 14.2 161 59-268 184-367 (438)
33 PRK14949 DNA polymerase III su 99.1 7.2E-10 1.6E-14 125.0 11.9 176 47-267 9-190 (944)
34 PRK08727 hypothetical protein; 99.1 2.5E-09 5.4E-14 105.5 14.5 158 82-304 42-210 (233)
35 PRK13342 recombination factor 99.1 1.6E-09 3.5E-14 115.8 14.2 187 46-303 4-201 (413)
36 TIGR03015 pepcterm_ATPase puta 99.1 3.2E-09 7E-14 106.5 15.5 191 81-305 43-245 (269)
37 TIGR01242 26Sp45 26S proteasom 99.1 8.8E-10 1.9E-14 115.9 11.9 160 58-267 122-305 (364)
38 TIGR02881 spore_V_K stage V sp 99.1 2E-09 4.3E-14 108.0 13.9 77 190-267 107-190 (261)
39 PRK08691 DNA polymerase III su 99.1 5.8E-10 1.3E-14 123.3 10.6 176 47-267 9-190 (709)
40 PRK08084 DNA replication initi 99.1 3.2E-09 6.8E-14 104.9 14.6 156 81-303 45-214 (235)
41 TIGR03689 pup_AAA proteasome A 99.0 2.8E-09 6.1E-14 115.4 15.4 165 59-267 183-377 (512)
42 PRK12323 DNA polymerase III su 99.0 5.8E-10 1.3E-14 122.1 9.9 175 47-266 9-194 (700)
43 PRK14958 DNA polymerase III su 99.0 8.2E-10 1.8E-14 120.4 11.1 176 47-267 9-190 (509)
44 PRK14960 DNA polymerase III su 99.0 1E-09 2.2E-14 120.4 11.3 177 46-267 7-189 (702)
45 PRK07994 DNA polymerase III su 99.0 8.6E-10 1.9E-14 122.3 10.8 175 47-266 9-189 (647)
46 PRK06645 DNA polymerase III su 99.0 2.1E-09 4.5E-14 116.7 13.1 178 47-268 14-200 (507)
47 PRK14951 DNA polymerase III su 99.0 2E-09 4.3E-14 119.1 13.0 176 47-267 9-195 (618)
48 PRK13341 recombination factor 99.0 7E-09 1.5E-13 117.1 15.8 188 44-302 18-221 (725)
49 PRK14088 dnaA chromosomal repl 99.0 8.9E-09 1.9E-13 110.7 16.0 167 81-303 130-310 (440)
50 PTZ00454 26S protease regulato 99.0 1.4E-08 3E-13 107.6 16.6 159 59-267 146-328 (398)
51 PRK09111 DNA polymerase III su 99.0 4E-09 8.7E-14 116.8 12.3 181 42-267 12-203 (598)
52 PRK06893 DNA replication initi 99.0 6.8E-09 1.5E-13 102.1 12.7 157 81-303 39-208 (229)
53 cd00009 AAA The AAA+ (ATPases 99.0 7.6E-09 1.7E-13 92.2 11.9 57 61-119 1-60 (151)
54 PF00931 NB-ARC: NB-ARC domain 98.9 8.2E-09 1.8E-13 104.4 13.4 165 63-268 1-170 (287)
55 PRK14952 DNA polymerase III su 98.9 5E-09 1.1E-13 115.5 12.6 174 48-266 7-188 (584)
56 PRK14957 DNA polymerase III su 98.9 4.4E-09 9.5E-14 115.0 11.5 175 47-266 9-189 (546)
57 PRK14964 DNA polymerase III su 98.9 4.4E-09 9.4E-14 113.5 11.0 176 47-267 6-187 (491)
58 PRK14959 DNA polymerase III su 98.9 3.8E-09 8.2E-14 116.3 10.6 178 45-266 7-189 (624)
59 PRK14963 DNA polymerase III su 98.9 7.3E-09 1.6E-13 112.8 12.7 211 48-302 8-221 (504)
60 PRK05563 DNA polymerase III su 98.9 6.2E-09 1.3E-13 115.0 12.1 173 49-266 11-189 (559)
61 PHA02544 44 clamp loader, smal 98.9 1.6E-08 3.6E-13 104.0 14.4 151 49-265 16-170 (316)
62 TIGR02880 cbbX_cfxQ probable R 98.9 2.2E-08 4.7E-13 101.7 15.0 133 82-266 59-206 (284)
63 PRK07764 DNA polymerase III su 98.9 7.7E-09 1.7E-13 118.1 12.2 215 47-303 8-226 (824)
64 TIGR02397 dnaX_nterm DNA polym 98.9 6.8E-09 1.5E-13 108.5 10.7 208 49-303 9-223 (355)
65 CHL00181 cbbX CbbX; Provisiona 98.9 3.6E-09 7.8E-14 107.4 8.2 134 81-266 59-207 (287)
66 PRK14087 dnaA chromosomal repl 98.9 1.3E-08 2.9E-13 109.5 13.0 171 80-303 140-324 (450)
67 COG2812 DnaX DNA polymerase II 98.9 9.2E-09 2E-13 110.8 11.2 174 49-267 11-190 (515)
68 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.6E-08 3.5E-13 98.7 12.1 137 64-266 23-170 (226)
69 PRK08451 DNA polymerase III su 98.9 1.5E-08 3.3E-13 110.3 12.9 176 47-267 7-188 (535)
70 PTZ00202 tuzin; Provisional 98.9 2.8E-07 6E-12 96.6 21.5 194 57-301 261-462 (550)
71 KOG0733 Nuclear AAA ATPase (VC 98.9 2.2E-08 4.8E-13 107.0 13.6 156 59-265 191-371 (802)
72 TIGR00602 rad24 checkpoint pro 98.9 9.6E-09 2.1E-13 114.0 11.3 185 47-265 77-284 (637)
73 CHL00176 ftsH cell division pr 98.9 1.5E-08 3.2E-13 113.1 12.9 160 59-268 184-366 (638)
74 TIGR02639 ClpA ATP-dependent C 98.9 6.5E-09 1.4E-13 118.7 10.1 155 58-267 182-357 (731)
75 TIGR02640 gas_vesic_GvpN gas v 98.9 3.3E-08 7.1E-13 99.3 13.7 44 81-124 21-64 (262)
76 PRK14969 DNA polymerase III su 98.9 9E-09 1.9E-13 112.9 10.3 174 48-266 10-189 (527)
77 PRK05896 DNA polymerase III su 98.8 1.3E-08 2.7E-13 111.7 11.2 174 48-266 10-189 (605)
78 TIGR00763 lon ATP-dependent pr 98.8 4.7E-08 1E-12 112.4 15.6 166 56-267 318-504 (775)
79 PRK09112 DNA polymerase III su 98.8 3.3E-08 7.1E-13 103.1 13.0 174 59-267 24-212 (351)
80 PRK12422 chromosomal replicati 98.8 6.9E-08 1.5E-12 103.8 15.1 165 81-302 141-317 (445)
81 TIGR01241 FtsH_fam ATP-depende 98.8 4.6E-08 9.9E-13 107.1 13.5 137 81-267 88-237 (495)
82 PLN00020 ribulose bisphosphate 98.8 1.4E-07 3E-12 97.1 15.7 168 54-267 115-310 (413)
83 PRK14955 DNA polymerase III su 98.8 1.6E-08 3.4E-13 107.6 9.2 213 46-302 8-232 (397)
84 PRK07133 DNA polymerase III su 98.8 5.9E-08 1.3E-12 108.5 13.9 169 49-266 13-188 (725)
85 KOG0991 Replication factor C, 98.8 4.4E-08 9.4E-13 93.8 10.8 160 47-266 20-183 (333)
86 PRK14965 DNA polymerase III su 98.8 2.2E-08 4.9E-13 111.0 10.3 172 48-266 10-189 (576)
87 TIGR01243 CDC48 AAA family ATP 98.8 1.6E-07 3.4E-12 107.6 17.3 137 82-267 488-634 (733)
88 PRK14953 DNA polymerase III su 98.8 4.4E-08 9.6E-13 106.3 11.9 209 48-303 10-225 (486)
89 COG1223 Predicted ATPase (AAA+ 98.8 3E-08 6.5E-13 96.3 9.1 148 68-267 134-296 (368)
90 TIGR03345 VI_ClpV1 type VI sec 98.7 5.7E-08 1.2E-12 112.2 12.8 159 59-265 188-360 (852)
91 COG0593 DnaA ATPase involved i 98.7 7.2E-08 1.6E-12 101.2 12.3 193 33-302 78-290 (408)
92 PF05621 TniB: Bacterial TniB 98.7 1.5E-07 3.3E-12 94.6 13.9 154 66-259 45-217 (302)
93 TIGR01243 CDC48 AAA family ATP 98.7 9E-08 1.9E-12 109.6 13.7 161 59-268 179-359 (733)
94 PRK07940 DNA polymerase III su 98.7 3E-08 6.6E-13 104.8 9.1 171 59-267 6-188 (394)
95 KOG0728 26S proteasome regulat 98.7 1.2E-07 2.6E-12 91.6 12.1 162 57-267 146-330 (404)
96 PRK06647 DNA polymerase III su 98.7 8.3E-08 1.8E-12 105.9 12.5 207 48-303 10-225 (563)
97 KOG2028 ATPase related to the 98.7 1.3E-07 2.8E-12 95.8 12.6 128 79-266 160-292 (554)
98 COG0466 Lon ATP-dependent Lon 98.7 2.2E-07 4.8E-12 101.6 14.9 211 58-315 323-566 (782)
99 PRK14954 DNA polymerase III su 98.7 8.2E-08 1.8E-12 106.6 11.9 178 47-266 9-197 (620)
100 PRK14950 DNA polymerase III su 98.7 6.3E-08 1.4E-12 107.9 11.0 179 47-267 9-191 (585)
101 TIGR00678 holB DNA polymerase 98.7 2.3E-07 5E-12 88.2 13.4 162 69-267 3-167 (188)
102 PRK08903 DnaA regulatory inact 98.7 2.4E-07 5.1E-12 90.8 13.8 37 80-116 41-80 (227)
103 PRK09087 hypothetical protein; 98.7 1.1E-07 2.3E-12 93.4 11.3 103 191-303 90-200 (226)
104 KOG0730 AAA+-type ATPase [Post 98.7 7.6E-08 1.7E-12 104.2 10.9 141 80-269 467-616 (693)
105 KOG0744 AAA+-type ATPase [Post 98.7 3.7E-08 8E-13 98.4 7.6 132 84-265 180-337 (423)
106 PRK05642 DNA replication initi 98.7 3E-07 6.5E-12 90.8 14.0 157 81-303 45-213 (234)
107 TIGR02902 spore_lonB ATP-depen 98.7 1.2E-07 2.6E-12 104.4 11.9 63 48-116 59-131 (531)
108 CHL00195 ycf46 Ycf46; Provisio 98.7 2E-07 4.4E-12 101.0 13.4 135 82-267 260-404 (489)
109 PRK14970 DNA polymerase III su 98.7 4.4E-07 9.6E-12 95.5 15.6 200 49-303 12-214 (367)
110 PRK06620 hypothetical protein; 98.7 2E-07 4.3E-12 90.8 11.9 102 190-303 87-194 (214)
111 CHL00095 clpC Clp protease ATP 98.7 1.2E-07 2.5E-12 109.8 12.0 159 58-266 179-352 (821)
112 PRK06305 DNA polymerase III su 98.7 1.3E-07 2.9E-12 101.9 11.7 210 48-303 11-227 (451)
113 PRK14948 DNA polymerase III su 98.7 1.4E-07 3.1E-12 105.1 12.1 174 48-266 10-191 (620)
114 PRK10787 DNA-binding ATP-depen 98.6 2.7E-07 5.9E-12 105.5 14.2 165 58-268 322-506 (784)
115 TIGR02639 ClpA ATP-dependent C 98.6 2.9E-07 6.3E-12 105.3 13.7 64 55-118 451-521 (731)
116 PRK11034 clpA ATP-dependent Cl 98.6 2.8E-07 6E-12 104.8 13.0 167 56-265 456-663 (758)
117 TIGR03346 chaperone_ClpB ATP-d 98.6 4.1E-07 8.9E-12 105.6 13.9 156 58-267 173-348 (852)
118 PRK10865 protein disaggregatio 98.6 3.5E-07 7.7E-12 105.9 13.1 158 58-267 178-353 (857)
119 PRK07471 DNA polymerase III su 98.6 4.3E-07 9.3E-12 95.3 12.5 187 49-268 14-213 (365)
120 COG0464 SpoVK ATPases of the A 98.6 3.9E-07 8.4E-12 99.8 12.2 138 82-268 277-423 (494)
121 COG2255 RuvB Holliday junction 98.5 8.1E-07 1.8E-11 87.8 12.4 156 47-268 19-194 (332)
122 PRK11034 clpA ATP-dependent Cl 98.5 4.3E-07 9.3E-12 103.3 11.8 161 58-267 186-361 (758)
123 PF05729 NACHT: NACHT domain 98.5 6.3E-07 1.4E-11 82.4 10.8 144 83-266 2-161 (166)
124 KOG0733 Nuclear AAA ATPase (VC 98.5 1.1E-06 2.4E-11 94.3 13.6 136 82-266 546-690 (802)
125 TIGR01650 PD_CobS cobaltochela 98.5 6.7E-07 1.4E-11 91.6 11.3 61 59-123 46-106 (327)
126 PRK14971 DNA polymerase III su 98.5 6.7E-07 1.4E-11 99.8 12.2 177 48-266 11-191 (614)
127 PF14516 AAA_35: AAA-like doma 98.5 2.2E-06 4.9E-11 89.0 15.3 184 60-267 13-213 (331)
128 PF07693 KAP_NTPase: KAP famil 98.5 8.6E-06 1.9E-10 83.9 19.3 72 63-134 1-83 (325)
129 KOG1969 DNA replication checkp 98.5 2.7E-06 5.8E-11 93.2 15.5 131 84-267 329-480 (877)
130 KOG0652 26S proteasome regulat 98.5 7.3E-07 1.6E-11 86.8 9.5 161 58-267 171-354 (424)
131 PRK05342 clpX ATP-dependent pr 98.5 2.2E-06 4.7E-11 91.3 14.1 63 54-116 67-143 (412)
132 KOG2004 Mitochondrial ATP-depe 98.5 2E-06 4.3E-11 94.0 13.5 202 58-305 411-644 (906)
133 KOG2035 Replication factor C, 98.4 2.2E-06 4.8E-11 84.3 12.3 177 59-268 14-199 (351)
134 PRK13531 regulatory ATPase Rav 98.4 1.2E-06 2.6E-11 93.8 11.1 67 53-124 15-83 (498)
135 PRK05707 DNA polymerase III su 98.4 1.6E-06 3.5E-11 89.7 11.6 152 80-267 20-177 (328)
136 KOG0734 AAA+-type ATPase conta 98.4 2.9E-06 6.2E-11 90.0 13.3 152 64-266 313-482 (752)
137 KOG2228 Origin recognition com 98.4 5.9E-06 1.3E-10 83.5 14.5 180 59-266 25-217 (408)
138 PRK08058 DNA polymerase III su 98.4 1E-06 2.2E-11 91.4 9.6 166 63-268 11-182 (329)
139 TIGR02903 spore_lon_C ATP-depe 98.4 3.7E-06 8.1E-11 94.1 14.6 63 49-117 149-221 (615)
140 PRK10733 hflB ATP-dependent me 98.4 2.6E-06 5.6E-11 96.0 13.4 137 82-267 186-334 (644)
141 TIGR00390 hslU ATP-dependent p 98.4 1.8E-05 4E-10 83.3 18.7 65 53-117 7-83 (441)
142 TIGR03346 chaperone_ClpB ATP-d 98.4 3.7E-06 8.1E-11 97.7 14.7 65 55-119 562-636 (852)
143 KOG0736 Peroxisome assembly fa 98.4 4E-06 8.6E-11 92.3 13.8 35 82-116 706-740 (953)
144 KOG0742 AAA+-type ATPase [Post 98.4 1.5E-06 3.2E-11 89.4 9.4 151 64-265 364-525 (630)
145 PRK11331 5-methylcytosine-spec 98.4 6.4E-06 1.4E-10 87.6 14.3 50 53-106 170-219 (459)
146 PRK05201 hslU ATP-dependent pr 98.3 2.7E-05 5.8E-10 82.1 18.6 65 53-117 10-86 (443)
147 PRK07399 DNA polymerase III su 98.3 3.8E-06 8.2E-11 86.5 11.8 171 59-268 5-195 (314)
148 PF13173 AAA_14: AAA domain 98.3 3.7E-06 7.9E-11 74.9 10.0 36 82-117 3-40 (128)
149 PRK06871 DNA polymerase III su 98.3 3.9E-06 8.5E-11 86.5 10.8 165 64-267 8-178 (325)
150 TIGR00382 clpX endopeptidase C 98.3 1.3E-05 2.8E-10 85.1 14.9 63 54-116 73-151 (413)
151 PRK10865 protein disaggregatio 98.3 4.6E-06 1E-10 96.8 12.4 64 55-118 565-638 (857)
152 COG0470 HolB ATPase involved i 98.3 1E-05 2.2E-10 83.2 13.5 168 62-265 5-178 (325)
153 CHL00095 clpC Clp protease ATP 98.3 8.9E-06 1.9E-10 94.3 14.5 64 55-118 506-579 (821)
154 PRK04132 replication factor C 98.3 6.8E-06 1.5E-10 93.9 12.9 126 83-267 566-701 (846)
155 PRK06964 DNA polymerase III su 98.3 4.4E-06 9.5E-11 86.7 10.1 163 80-268 19-204 (342)
156 KOG0727 26S proteasome regulat 98.2 4.1E-06 8.9E-11 81.3 9.0 138 79-265 187-336 (408)
157 PRK04841 transcriptional regul 98.2 1.4E-05 3E-10 93.7 15.4 178 58-267 14-198 (903)
158 TIGR03345 VI_ClpV1 type VI sec 98.2 8E-06 1.7E-10 94.6 12.8 65 54-118 562-636 (852)
159 PRK05564 DNA polymerase III su 98.2 1.7E-05 3.7E-10 81.7 14.0 159 59-267 5-164 (313)
160 PF13177 DNA_pol3_delta2: DNA 98.2 3.4E-06 7.3E-11 78.5 7.9 155 64-256 3-162 (162)
161 KOG0731 AAA+-type ATPase conta 98.2 1.2E-05 2.7E-10 89.7 13.3 153 65-268 321-495 (774)
162 PRK12377 putative replication 98.2 4.4E-06 9.6E-11 83.0 8.8 34 81-114 101-137 (248)
163 PF05673 DUF815: Protein of un 98.2 2.5E-05 5.3E-10 76.6 13.6 56 58-113 27-87 (249)
164 PRK07993 DNA polymerase III su 98.2 5.6E-06 1.2E-10 85.9 9.8 165 64-267 8-179 (334)
165 CHL00206 ycf2 Ycf2; Provisiona 98.2 1.3E-05 2.7E-10 96.3 13.6 36 82-117 1631-1666(2281)
166 PHA02244 ATPase-like protein 98.2 1.1E-05 2.3E-10 83.9 11.3 61 54-114 92-152 (383)
167 KOG0729 26S proteasome regulat 98.2 2E-05 4.4E-10 77.1 11.8 159 57-264 176-357 (435)
168 PF00158 Sigma54_activat: Sigm 98.2 1E-05 2.2E-10 75.8 9.4 70 61-135 2-74 (168)
169 PRK08181 transposase; Validate 98.2 6.4E-06 1.4E-10 82.8 8.6 64 37-114 73-142 (269)
170 PF06068 TIP49: TIP49 C-termin 98.2 1.6E-05 3.4E-10 82.0 11.4 69 189-269 279-362 (398)
171 PRK06090 DNA polymerase III su 98.2 2.4E-05 5.2E-10 80.5 12.9 167 64-268 9-180 (319)
172 PRK08769 DNA polymerase III su 98.2 1.2E-05 2.6E-10 82.8 10.6 167 64-267 10-184 (319)
173 PRK06526 transposase; Provisio 98.1 6E-06 1.3E-10 82.5 8.1 58 36-105 65-122 (254)
174 PRK07952 DNA replication prote 98.1 1.2E-05 2.5E-10 79.8 9.6 32 82-113 100-134 (244)
175 COG1224 TIP49 DNA helicase TIP 98.1 0.00016 3.4E-09 73.8 16.9 104 189-309 292-412 (450)
176 KOG0726 26S proteasome regulat 98.1 1.1E-05 2.4E-10 79.9 8.2 160 58-266 185-367 (440)
177 TIGR02974 phageshock_pspF psp 98.1 3.2E-05 7E-10 80.2 12.2 58 61-118 2-62 (329)
178 smart00382 AAA ATPases associa 98.1 2.4E-05 5.2E-10 68.6 9.5 37 82-118 3-42 (148)
179 PRK08116 hypothetical protein; 98.1 2.1E-05 4.6E-10 79.2 10.1 33 82-114 115-150 (268)
180 PLN03210 Resistant to P. syrin 98.0 0.00014 3.1E-09 87.6 18.3 162 58-267 184-363 (1153)
181 KOG0735 AAA+-type ATPase [Post 98.0 6.1E-05 1.3E-09 82.5 13.3 135 83-266 703-846 (952)
182 TIGR01817 nifA Nif-specific re 98.0 4.5E-05 9.8E-10 84.4 12.5 59 59-117 197-258 (534)
183 PF10443 RNA12: RNA12 protein; 98.0 0.00025 5.4E-09 74.7 16.9 197 63-268 1-229 (431)
184 PRK08939 primosomal protein Dn 98.0 3.6E-05 7.7E-10 79.0 10.6 34 81-114 156-192 (306)
185 PRK08699 DNA polymerase III su 98.0 2.3E-05 5E-10 81.1 8.8 169 64-268 7-185 (325)
186 COG0714 MoxR-like ATPases [Gen 98.0 6.2E-05 1.4E-09 78.1 11.7 64 57-124 23-86 (329)
187 KOG0990 Replication factor C, 98.0 2E-05 4.3E-10 79.2 7.5 169 45-268 32-203 (360)
188 PRK06921 hypothetical protein; 97.9 3.5E-05 7.6E-10 77.5 8.4 34 81-114 117-154 (266)
189 PRK05022 anaerobic nitric oxid 97.9 0.00014 3.1E-09 80.0 13.9 60 59-118 188-250 (509)
190 KOG0738 AAA+-type ATPase [Post 97.9 4.1E-05 8.9E-10 78.7 8.8 34 82-115 246-279 (491)
191 KOG0741 AAA+-type ATPase [Post 97.9 3.6E-05 7.8E-10 81.8 8.5 138 82-267 539-685 (744)
192 PF01695 IstB_IS21: IstB-like 97.9 2.4E-05 5.3E-10 73.9 6.6 35 80-114 46-83 (178)
193 PRK11608 pspF phage shock prot 97.9 0.00016 3.5E-09 75.0 12.7 59 59-117 7-68 (326)
194 KOG0735 AAA+-type ATPase [Post 97.9 7.6E-05 1.6E-09 81.8 10.4 137 81-266 431-584 (952)
195 COG2909 MalT ATP-dependent tra 97.9 0.00012 2.6E-09 82.1 12.1 178 58-268 19-207 (894)
196 PRK15424 propionate catabolism 97.8 0.00027 5.8E-09 77.8 14.7 60 59-118 220-290 (538)
197 PF07724 AAA_2: AAA domain (Cd 97.8 7.9E-06 1.7E-10 76.7 2.4 39 81-119 3-45 (171)
198 COG0542 clpA ATP-binding subun 97.8 0.00017 3.6E-09 81.3 12.8 137 55-234 488-644 (786)
199 KOG1942 DNA helicase, TBP-inte 97.8 0.00026 5.6E-09 70.4 12.4 74 189-269 297-381 (456)
200 KOG0651 26S proteasome regulat 97.8 4.6E-05 9.9E-10 76.3 7.1 59 59-117 133-202 (388)
201 COG3267 ExeA Type II secretory 97.8 0.00084 1.8E-08 65.9 15.6 153 81-268 51-213 (269)
202 COG0542 clpA ATP-binding subun 97.8 0.0002 4.3E-09 80.8 12.3 161 58-268 170-346 (786)
203 PRK09183 transposase/IS protei 97.8 0.00012 2.6E-09 73.4 9.5 68 35-114 68-138 (259)
204 cd01120 RecA-like_NTPases RecA 97.8 0.0001 2.2E-09 67.1 8.3 35 84-118 2-39 (165)
205 KOG0737 AAA+-type ATPase [Post 97.8 0.00013 2.7E-09 74.9 9.6 37 81-117 127-163 (386)
206 KOG0736 Peroxisome assembly fa 97.7 0.00015 3.2E-09 80.3 10.6 154 59-265 402-573 (953)
207 PF14532 Sigma54_activ_2: Sigm 97.7 3.7E-05 8E-10 69.4 4.6 45 62-106 2-46 (138)
208 COG0465 HflB ATP-dependent Zn 97.7 0.00036 7.8E-09 76.7 12.7 156 60-266 152-331 (596)
209 COG1484 DnaC DNA replication p 97.7 0.00027 5.9E-09 70.6 10.8 65 39-114 74-141 (254)
210 PRK06835 DNA replication prote 97.7 0.00018 4E-09 74.4 9.8 34 81-114 183-219 (329)
211 PF03969 AFG1_ATPase: AFG1-lik 97.7 0.00017 3.8E-09 75.5 9.6 127 68-241 47-175 (362)
212 COG2204 AtoC Response regulato 97.7 0.00038 8.2E-09 74.6 12.0 80 57-141 140-222 (464)
213 KOG0743 AAA+-type ATPase [Post 97.7 0.00041 8.9E-09 73.1 11.9 52 65-116 212-270 (457)
214 KOG0741 AAA+-type ATPase [Post 97.7 0.00014 3E-09 77.4 8.3 113 82-234 257-379 (744)
215 TIGR02237 recomb_radB DNA repa 97.6 0.00038 8.2E-09 67.1 10.7 44 81-125 12-58 (209)
216 PF07728 AAA_5: AAA domain (dy 97.6 6.7E-05 1.5E-09 67.4 5.0 42 83-124 1-42 (139)
217 KOG1970 Checkpoint RAD17-RFC c 97.6 0.00048 1E-08 73.9 11.8 53 65-117 89-147 (634)
218 PRK15429 formate hydrogenlyase 97.6 0.00056 1.2E-08 78.1 13.3 60 59-118 377-439 (686)
219 PTZ00494 tuzin-like protein; P 97.6 0.003 6.6E-08 66.6 17.2 196 56-301 369-572 (664)
220 PF12774 AAA_6: Hydrolytic ATP 97.6 0.00067 1.5E-08 66.8 12.0 38 83-120 34-71 (231)
221 PF12775 AAA_7: P-loop contain 97.6 5.5E-05 1.2E-09 76.4 4.1 137 81-265 33-190 (272)
222 PRK10820 DNA-binding transcrip 97.6 0.00086 1.9E-08 74.0 13.5 60 59-118 205-267 (520)
223 KOG0739 AAA+-type ATPase [Post 97.5 0.00015 3.3E-09 72.3 6.1 33 82-114 167-199 (439)
224 PRK11388 DNA-binding transcrip 97.5 0.001 2.2E-08 75.4 13.5 60 59-118 326-388 (638)
225 PRK07276 DNA polymerase III su 97.5 0.00053 1.1E-08 69.6 10.0 161 65-268 9-175 (290)
226 KOG0732 AAA+-type ATPase conta 97.5 0.00057 1.2E-08 78.8 11.0 138 83-267 301-450 (1080)
227 KOG0730 AAA+-type ATPase [Post 97.5 0.0004 8.7E-09 75.9 8.7 137 80-265 217-361 (693)
228 PF03215 Rad17: Rad17 cell cyc 97.4 0.0011 2.4E-08 72.7 12.2 59 49-111 14-75 (519)
229 PRK05818 DNA polymerase III su 97.4 0.00036 7.8E-09 69.3 7.4 148 83-267 9-169 (261)
230 PF04665 Pox_A32: Poxvirus A32 97.4 0.0017 3.6E-08 64.1 11.8 148 83-266 15-168 (241)
231 cd01393 recA_like RecA is a b 97.4 0.0015 3.2E-08 63.7 11.1 49 73-121 11-68 (226)
232 cd01394 radB RadB. The archaea 97.4 0.001 2.2E-08 64.6 9.7 47 72-118 10-59 (218)
233 COG1221 PspF Transcriptional r 97.4 0.00056 1.2E-08 72.0 8.3 160 60-264 80-257 (403)
234 TIGR02329 propionate_PrpR prop 97.4 0.0011 2.3E-08 73.1 10.8 60 59-118 213-275 (526)
235 KOG1968 Replication factor C, 97.4 0.00036 7.9E-09 80.2 7.3 140 84-268 360-502 (871)
236 cd01124 KaiC KaiC is a circadi 97.3 0.0012 2.6E-08 62.1 9.8 41 84-126 2-45 (187)
237 COG1219 ClpX ATP-dependent pro 97.3 0.00046 1E-08 69.5 7.0 37 81-117 97-133 (408)
238 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.002 4.2E-08 63.7 11.1 55 70-126 10-67 (237)
239 PF06745 KaiC: KaiC; InterPro 97.3 0.00059 1.3E-08 66.7 7.1 129 80-233 18-160 (226)
240 cd01128 rho_factor Transcripti 97.3 0.00077 1.7E-08 67.1 7.7 50 80-129 15-70 (249)
241 COG5271 MDN1 AAA ATPase contai 97.3 0.0021 4.6E-08 76.1 11.9 167 71-286 878-1062(4600)
242 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.002 4.4E-08 63.1 10.6 51 73-123 11-70 (235)
243 KOG0740 AAA+-type ATPase [Post 97.2 0.00099 2.1E-08 70.5 8.6 37 80-116 185-221 (428)
244 PRK09361 radB DNA repair and r 97.2 0.0016 3.5E-08 63.6 9.5 36 80-115 22-60 (225)
245 PRK07132 DNA polymerase III su 97.2 0.0065 1.4E-07 62.1 14.1 74 187-268 89-162 (299)
246 PF13086 AAA_11: AAA domain; P 97.2 0.00054 1.2E-08 66.3 6.0 38 64-105 4-41 (236)
247 PRK12608 transcription termina 97.2 0.0015 3.2E-08 68.3 9.2 62 70-132 123-190 (380)
248 PF13207 AAA_17: AAA domain; P 97.2 0.00033 7.1E-09 61.2 3.5 30 84-113 2-31 (121)
249 TIGR02238 recomb_DMC1 meiotic 97.2 0.0025 5.4E-08 65.7 10.4 59 72-131 87-154 (313)
250 KOG0745 Putative ATP-dependent 97.2 0.00067 1.5E-08 70.9 6.1 36 82-117 227-262 (564)
251 PRK10536 hypothetical protein; 97.2 0.0033 7.1E-08 62.5 10.8 49 60-112 57-109 (262)
252 TIGR01818 ntrC nitrogen regula 97.2 0.0035 7.7E-08 68.0 12.2 58 60-117 136-196 (463)
253 PRK10923 glnG nitrogen regulat 97.1 0.0036 7.8E-08 68.1 12.0 59 59-117 139-200 (469)
254 TIGR02012 tigrfam_recA protein 97.1 0.0018 4E-08 66.6 9.1 42 79-120 53-97 (321)
255 PF09848 DUF2075: Uncharacteri 97.1 0.0012 2.6E-08 69.2 7.4 23 83-105 3-25 (352)
256 cd00984 DnaB_C DnaB helicase C 97.1 0.0033 7.1E-08 61.9 10.1 52 79-132 11-66 (242)
257 PLN03187 meiotic recombination 97.1 0.004 8.8E-08 64.8 10.9 57 74-131 119-184 (344)
258 KOG2170 ATPase of the AAA+ sup 97.1 0.0026 5.6E-08 63.9 8.9 48 58-105 86-134 (344)
259 PRK04301 radA DNA repair and r 97.0 0.0054 1.2E-07 63.4 11.5 56 70-125 91-155 (317)
260 cd00983 recA RecA is a bacter 97.0 0.0033 7.2E-08 64.8 9.7 41 80-120 54-97 (325)
261 PRK05917 DNA polymerase III su 97.0 0.013 2.9E-07 59.4 13.9 146 65-255 4-154 (290)
262 PRK05973 replicative DNA helic 97.0 0.0044 9.4E-08 61.2 9.9 46 80-127 63-111 (237)
263 TIGR00767 rho transcription te 97.0 0.0025 5.5E-08 67.1 8.5 52 80-131 167-224 (415)
264 TIGR02915 PEP_resp_reg putativ 97.0 0.0075 1.6E-07 65.1 12.5 60 59-118 140-202 (445)
265 PTZ00035 Rad51 protein; Provis 97.0 0.0061 1.3E-07 63.5 11.3 53 70-122 107-168 (337)
266 COG2607 Predicted ATPase (AAA+ 97.0 0.017 3.6E-07 56.5 13.2 55 59-113 61-120 (287)
267 PRK06067 flagellar accessory p 96.9 0.0073 1.6E-07 59.4 10.9 53 72-126 16-71 (234)
268 PRK11823 DNA repair protein Ra 96.9 0.0013 2.8E-08 71.1 6.1 47 70-116 69-118 (446)
269 PRK06696 uridine kinase; Valid 96.9 0.0019 4.1E-08 63.2 6.7 59 62-120 2-64 (223)
270 PRK04328 hypothetical protein; 96.9 0.0086 1.9E-07 59.7 11.4 52 72-125 14-68 (249)
271 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0061 1.3E-07 61.1 10.4 46 80-127 35-83 (259)
272 PRK04296 thymidine kinase; Pro 96.9 0.0012 2.7E-08 62.9 4.9 31 83-113 4-37 (190)
273 TIGR02236 recomb_radA DNA repa 96.9 0.0085 1.8E-07 61.6 11.3 54 72-125 86-148 (310)
274 smart00487 DEXDc DEAD-like hel 96.9 0.0077 1.7E-07 55.9 10.1 66 62-131 9-78 (201)
275 cd00046 DEXDc DEAD-like helica 96.9 0.0028 6.1E-08 55.2 6.6 23 83-105 2-24 (144)
276 PRK00771 signal recognition pa 96.8 0.0082 1.8E-07 64.6 11.0 36 83-118 97-135 (437)
277 cd01122 GP4d_helicase GP4d_hel 96.8 0.005 1.1E-07 61.8 9.0 52 80-133 29-84 (271)
278 PRK09354 recA recombinase A; P 96.8 0.0076 1.6E-07 62.7 10.3 48 73-120 51-102 (349)
279 PRK10875 recD exonuclease V su 96.8 0.0032 7E-08 70.5 8.1 50 82-131 168-223 (615)
280 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.014 3.1E-07 57.0 11.9 47 70-116 9-58 (229)
281 PRK11361 acetoacetate metaboli 96.8 0.013 2.8E-07 63.5 12.6 59 60-118 145-206 (457)
282 KOG3347 Predicted nucleotide k 96.8 0.0012 2.5E-08 59.8 3.6 31 81-111 7-37 (176)
283 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0022 4.8E-08 57.5 5.4 44 64-107 5-48 (133)
284 PRK08533 flagellar accessory p 96.8 0.0065 1.4E-07 59.8 9.2 53 73-127 16-71 (230)
285 PRK05800 cobU adenosylcobinami 96.8 0.0035 7.5E-08 58.8 6.8 47 83-130 3-49 (170)
286 TIGR01447 recD exodeoxyribonuc 96.7 0.0042 9.2E-08 69.3 8.4 24 82-105 161-184 (586)
287 PRK08118 topology modulation p 96.7 0.0027 5.8E-08 59.3 5.8 33 83-115 3-35 (167)
288 cd01121 Sms Sms (bacterial rad 96.7 0.0017 3.6E-08 68.5 4.6 46 71-116 72-120 (372)
289 COG1373 Predicted ATPase (AAA+ 96.7 0.019 4.2E-07 61.2 12.6 52 59-114 18-70 (398)
290 PF10236 DAP3: Mitochondrial r 96.7 0.072 1.6E-06 54.9 16.5 37 68-104 8-46 (309)
291 PLN03186 DNA repair protein RA 96.7 0.0083 1.8E-07 62.5 9.6 57 74-131 116-181 (342)
292 TIGR02655 circ_KaiC circadian 96.7 0.0089 1.9E-07 65.5 10.1 57 68-126 250-309 (484)
293 PF07726 AAA_3: ATPase family 96.7 0.0019 4.1E-08 57.3 3.9 33 83-115 1-33 (131)
294 PRK15115 response regulator Gl 96.6 0.02 4.4E-07 61.7 12.6 58 60-117 136-196 (444)
295 COG1485 Predicted ATPase [Gene 96.6 0.0044 9.6E-08 63.6 6.8 111 82-240 66-177 (367)
296 TIGR02239 recomb_RAD51 DNA rep 96.6 0.008 1.7E-07 62.1 8.6 50 73-122 88-146 (316)
297 PRK14974 cell division protein 96.6 0.024 5.3E-07 58.9 12.2 35 83-117 142-179 (336)
298 COG1102 Cmk Cytidylate kinase 96.6 0.0024 5.2E-08 58.6 4.1 40 84-131 3-42 (179)
299 PRK13695 putative NTPase; Prov 96.6 0.0023 5.1E-08 59.9 4.3 70 188-266 96-170 (174)
300 cd03115 SRP The signal recogni 96.6 0.01 2.2E-07 55.4 8.6 35 84-118 3-40 (173)
301 KOG4658 Apoptotic ATPase [Sign 96.5 0.015 3.3E-07 67.8 11.3 72 61-134 161-238 (889)
302 TIGR02688 conserved hypothetic 96.5 0.022 4.7E-07 60.5 11.1 42 62-104 191-232 (449)
303 PF13479 AAA_24: AAA domain 96.5 0.006 1.3E-07 59.3 6.6 30 83-117 5-34 (213)
304 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.015 3.3E-07 56.7 9.5 53 72-126 7-62 (224)
305 PF13245 AAA_19: Part of AAA d 96.5 0.0025 5.5E-08 51.4 3.3 24 82-105 11-34 (76)
306 KOG2680 DNA helicase TIP49, TB 96.4 0.022 4.8E-07 57.2 10.2 40 80-119 65-106 (454)
307 COG1618 Predicted nucleotide k 96.4 0.025 5.4E-07 52.0 9.7 24 83-106 7-30 (179)
308 PF07088 GvpD: GvpD gas vesicl 96.4 0.01 2.2E-07 61.7 8.1 45 80-126 9-55 (484)
309 PRK00131 aroK shikimate kinase 96.4 0.0035 7.5E-08 58.1 4.3 31 81-111 4-34 (175)
310 TIGR00764 lon_rel lon-related 96.4 0.012 2.7E-07 66.0 9.1 75 54-133 14-92 (608)
311 cd00544 CobU Adenosylcobinamid 96.3 0.017 3.8E-07 54.0 8.4 35 84-118 2-36 (169)
312 PF13671 AAA_33: AAA domain; P 96.3 0.0045 9.8E-08 55.5 4.3 28 84-113 2-29 (143)
313 PF00910 RNA_helicase: RNA hel 96.3 0.0029 6.3E-08 54.5 2.9 23 84-106 1-23 (107)
314 PRK09302 circadian clock prote 96.3 0.018 4E-07 63.4 9.8 55 70-126 262-319 (509)
315 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.061 1.3E-06 49.8 11.7 52 186-242 93-146 (159)
316 COG2842 Uncharacterized ATPase 96.3 0.021 4.5E-07 57.5 9.1 110 81-234 94-203 (297)
317 TIGR01448 recD_rel helicase, p 96.2 0.014 3.1E-07 66.8 8.9 41 61-106 323-363 (720)
318 TIGR00416 sms DNA repair prote 96.2 0.013 2.8E-07 63.5 7.8 48 69-116 82-132 (454)
319 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.0052 1.1E-07 59.8 4.3 22 82-103 30-51 (213)
320 PRK03839 putative kinase; Prov 96.1 0.0051 1.1E-07 57.9 3.8 29 83-111 2-30 (180)
321 PRK13947 shikimate kinase; Pro 96.1 0.0059 1.3E-07 56.7 4.2 30 82-111 2-31 (171)
322 PRK09376 rho transcription ter 96.1 0.018 3.9E-07 60.6 8.0 48 81-128 169-222 (416)
323 TIGR02768 TraA_Ti Ti-type conj 96.1 0.015 3.3E-07 66.9 8.1 43 60-106 351-393 (744)
324 KOG1051 Chaperone HSP104 and r 96.1 0.043 9.4E-07 63.2 11.5 63 55-117 559-630 (898)
325 PHA02624 large T antigen; Prov 96.0 0.015 3.2E-07 64.1 7.2 35 82-116 432-466 (647)
326 smart00763 AAA_PrkA PrkA AAA d 96.0 0.008 1.7E-07 62.6 4.8 49 59-107 52-104 (361)
327 PF05970 PIF1: PIF1-like helic 96.0 0.014 3E-07 61.5 6.8 28 80-107 21-48 (364)
328 PRK07261 topology modulation p 96.0 0.007 1.5E-07 56.7 4.0 31 84-114 3-33 (171)
329 PF08423 Rad51: Rad51; InterP 96.0 0.043 9.4E-07 54.9 9.8 97 84-201 41-146 (256)
330 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.0069 1.5E-07 56.9 3.9 27 84-110 2-28 (183)
331 PRK09302 circadian clock prote 96.0 0.038 8.2E-07 60.9 10.2 53 73-127 23-79 (509)
332 TIGR01967 DEAH_box_HrpA ATP-de 95.9 0.059 1.3E-06 64.8 12.3 70 59-133 65-137 (1283)
333 PRK12723 flagellar biosynthesi 95.9 0.084 1.8E-06 56.0 12.1 35 83-117 176-217 (388)
334 TIGR02442 Cob-chelat-sub cobal 95.9 0.043 9.4E-07 62.1 10.6 45 59-105 5-49 (633)
335 COG1936 Predicted nucleotide k 95.9 0.006 1.3E-07 56.7 2.9 30 83-113 2-31 (180)
336 PF08433 KTI12: Chromatin asso 95.9 0.015 3.2E-07 58.7 6.1 32 82-113 2-36 (270)
337 PF13238 AAA_18: AAA domain; P 95.9 0.0061 1.3E-07 53.2 2.9 22 84-105 1-22 (129)
338 PRK14530 adenylate kinase; Pro 95.9 0.0083 1.8E-07 58.3 4.0 30 82-111 4-33 (215)
339 PRK06217 hypothetical protein; 95.8 0.0091 2E-07 56.4 4.1 31 83-113 3-33 (183)
340 PRK09519 recA DNA recombinatio 95.8 0.037 8E-07 63.3 9.5 49 72-120 50-102 (790)
341 PRK06762 hypothetical protein; 95.8 0.0099 2.1E-07 55.0 4.2 32 83-114 4-35 (166)
342 COG3829 RocR Transcriptional r 95.8 0.075 1.6E-06 57.7 11.3 68 59-128 246-316 (560)
343 TIGR00376 DNA helicase, putati 95.8 0.018 3.9E-07 65.0 6.9 38 64-105 160-197 (637)
344 cd00227 CPT Chloramphenicol (C 95.8 0.0082 1.8E-07 56.3 3.5 32 82-113 3-34 (175)
345 PRK00625 shikimate kinase; Pro 95.8 0.0092 2E-07 56.1 3.8 31 83-113 2-32 (173)
346 PRK10646 ADP-binding protein; 95.8 0.042 9.2E-07 50.5 8.0 44 64-107 11-54 (153)
347 TIGR01360 aden_kin_iso1 adenyl 95.8 0.01 2.2E-07 55.8 4.2 30 81-110 3-32 (188)
348 PF00270 DEAD: DEAD/DEAH box h 95.8 0.027 5.9E-07 51.6 6.9 44 189-235 120-163 (169)
349 PF13481 AAA_25: AAA domain; P 95.8 0.088 1.9E-06 49.7 10.6 37 81-117 32-81 (193)
350 PRK13889 conjugal transfer rel 95.8 0.028 6E-07 66.1 8.4 39 63-105 348-386 (988)
351 cd00464 SK Shikimate kinase (S 95.8 0.011 2.4E-07 53.7 4.2 28 83-110 1-28 (154)
352 PRK13833 conjugal transfer pro 95.7 0.025 5.5E-07 58.4 7.1 50 52-105 119-168 (323)
353 COG5271 MDN1 AAA ATPase contai 95.7 0.05 1.1E-06 65.4 9.9 48 67-118 1533-1580(4600)
354 PRK14532 adenylate kinase; Pro 95.7 0.0098 2.1E-07 56.3 3.7 28 83-110 2-29 (188)
355 PRK04040 adenylate kinase; Pro 95.7 0.0099 2.1E-07 56.7 3.7 32 83-114 4-35 (188)
356 TIGR02782 TrbB_P P-type conjug 95.6 0.038 8.3E-07 56.6 8.0 51 51-105 106-156 (299)
357 PRK10263 DNA translocase FtsK; 95.6 0.044 9.6E-07 65.1 9.4 80 188-268 1140-1220(1355)
358 cd02020 CMPK Cytidine monophos 95.6 0.012 2.6E-07 52.8 3.9 30 84-113 2-31 (147)
359 PRK13765 ATP-dependent proteas 95.6 0.028 6E-07 63.3 7.5 73 56-133 29-105 (637)
360 COG3899 Predicted ATPase [Gene 95.6 0.21 4.6E-06 58.4 14.9 48 60-107 2-50 (849)
361 PF03266 NTPase_1: NTPase; In 95.6 0.0097 2.1E-07 55.7 3.2 23 83-105 1-23 (168)
362 PRK14531 adenylate kinase; Pro 95.6 0.012 2.7E-07 55.5 3.9 28 83-110 4-31 (183)
363 cd01428 ADK Adenylate kinase ( 95.6 0.012 2.6E-07 55.7 3.8 27 84-110 2-28 (194)
364 PF06309 Torsin: Torsin; Inte 95.6 0.017 3.7E-07 51.1 4.4 51 55-105 22-77 (127)
365 PF13604 AAA_30: AAA domain; P 95.5 0.018 3.9E-07 55.2 4.9 40 64-106 4-43 (196)
366 PRK13949 shikimate kinase; Pro 95.5 0.013 2.8E-07 54.8 3.9 30 83-112 3-32 (169)
367 PRK06547 hypothetical protein; 95.5 0.013 2.8E-07 55.1 3.8 29 82-110 16-44 (172)
368 PRK15455 PrkA family serine pr 95.5 0.017 3.6E-07 63.5 4.9 53 59-111 77-133 (644)
369 PRK13826 Dtr system oriT relax 95.5 0.041 8.9E-07 65.2 8.5 41 62-106 382-422 (1102)
370 PRK14528 adenylate kinase; Pro 95.5 0.015 3.1E-07 55.3 3.9 29 82-110 2-30 (186)
371 TIGR00708 cobA cob(I)alamin ad 95.5 0.12 2.6E-06 48.5 9.9 135 82-242 6-148 (173)
372 PF13521 AAA_28: AAA domain; P 95.4 0.011 2.3E-07 54.7 2.8 25 84-109 2-26 (163)
373 TIGR02655 circ_KaiC circadian 95.4 0.093 2E-06 57.5 10.5 53 72-126 12-68 (484)
374 PRK02496 adk adenylate kinase; 95.3 0.017 3.7E-07 54.5 4.0 29 84-112 4-32 (184)
375 PLN02200 adenylate kinase fami 95.3 0.019 4.1E-07 56.7 4.4 30 83-114 45-74 (234)
376 PHA00729 NTP-binding motif con 95.3 0.011 2.5E-07 57.7 2.8 26 81-106 17-42 (226)
377 PF00448 SRP54: SRP54-type pro 95.3 0.064 1.4E-06 51.5 7.9 48 84-131 4-55 (196)
378 PLN02674 adenylate kinase 95.3 0.03 6.6E-07 55.5 5.8 30 81-110 31-60 (244)
379 COG1643 HrpA HrpA-like helicas 95.3 0.099 2.1E-06 60.4 10.6 165 66-259 54-241 (845)
380 cd02019 NK Nucleoside/nucleoti 95.3 0.029 6.4E-07 44.1 4.6 29 84-112 2-31 (69)
381 COG1672 Predicted ATPase (AAA+ 95.3 0.031 6.7E-07 58.6 6.0 56 58-115 2-57 (359)
382 PRK11131 ATP-dependent RNA hel 95.2 0.14 3E-06 61.6 11.7 61 68-132 80-143 (1294)
383 cd02021 GntK Gluconate kinase 95.2 0.019 4.2E-07 52.0 3.7 33 84-118 2-34 (150)
384 PRK13407 bchI magnesium chelat 95.2 0.03 6.6E-07 58.2 5.5 45 59-106 9-54 (334)
385 TIGR01351 adk adenylate kinase 95.2 0.021 4.5E-07 55.3 4.0 28 84-111 2-29 (210)
386 TIGR01313 therm_gnt_kin carboh 95.1 0.02 4.3E-07 52.8 3.7 32 84-117 1-32 (163)
387 PRK00279 adk adenylate kinase; 95.1 0.021 4.6E-07 55.4 4.0 27 84-110 3-29 (215)
388 PTZ00088 adenylate kinase 1; P 95.1 0.02 4.4E-07 56.3 3.8 30 83-112 8-37 (229)
389 TIGR01970 DEAH_box_HrpB ATP-de 95.1 0.15 3.2E-06 59.3 11.3 36 66-105 6-42 (819)
390 COG4608 AppF ABC-type oligopep 95.1 0.11 2.4E-06 51.9 8.8 126 80-234 38-170 (268)
391 KOG2383 Predicted ATPase [Gene 95.1 0.088 1.9E-06 55.1 8.4 23 83-105 116-138 (467)
392 COG0802 Predicted ATPase or ki 95.1 0.097 2.1E-06 47.6 7.7 46 62-107 6-51 (149)
393 cd03238 ABC_UvrA The excision 95.1 0.15 3.1E-06 48.2 9.3 23 81-103 21-43 (176)
394 PRK08233 hypothetical protein; 95.0 0.028 6.1E-07 52.5 4.5 33 83-115 5-38 (182)
395 PRK05986 cob(I)alamin adenolsy 95.0 0.23 5.1E-06 47.3 10.6 137 81-242 22-166 (191)
396 PRK13894 conjugal transfer ATP 95.0 0.057 1.2E-06 55.8 7.0 51 51-105 122-172 (319)
397 cd01130 VirB11-like_ATPase Typ 95.0 0.047 1E-06 51.8 6.0 38 65-106 13-50 (186)
398 PLN02840 tRNA dimethylallyltra 94.9 0.09 2E-06 56.1 8.4 36 82-117 22-57 (421)
399 PLN02165 adenylate isopentenyl 94.9 0.051 1.1E-06 56.1 6.4 29 80-108 42-70 (334)
400 COG3604 FhlA Transcriptional r 94.9 0.072 1.6E-06 57.2 7.4 79 59-142 224-305 (550)
401 COG0563 Adk Adenylate kinase a 94.9 0.028 6E-07 53.1 3.9 28 83-110 2-29 (178)
402 PRK07667 uridine kinase; Provi 94.9 0.058 1.2E-06 51.5 6.1 50 69-118 5-57 (193)
403 cd02027 APSK Adenosine 5'-phos 94.8 0.035 7.7E-07 50.7 4.3 31 84-114 2-35 (149)
404 PRK14527 adenylate kinase; Pro 94.8 0.024 5.3E-07 53.9 3.4 30 81-110 6-35 (191)
405 PRK13946 shikimate kinase; Pro 94.8 0.031 6.7E-07 52.9 4.0 30 82-111 11-40 (184)
406 PRK10365 transcriptional regul 94.8 0.43 9.2E-06 51.3 13.3 39 80-118 161-202 (441)
407 PRK01184 hypothetical protein; 94.7 0.031 6.8E-07 52.6 3.8 27 83-110 3-29 (184)
408 PF07931 CPT: Chloramphenicol 94.7 0.029 6.4E-07 52.7 3.6 33 83-115 3-35 (174)
409 PRK14737 gmk guanylate kinase; 94.7 0.028 6E-07 53.5 3.5 26 81-106 4-29 (186)
410 PRK11664 ATP-dependent RNA hel 94.7 0.19 4.1E-06 58.4 10.9 36 65-104 8-44 (812)
411 TIGR01425 SRP54_euk signal rec 94.7 0.32 7E-06 52.1 11.8 51 68-118 80-140 (429)
412 PF08303 tRNA_lig_kinase: tRNA 94.7 0.25 5.3E-06 45.8 9.4 26 87-113 5-30 (168)
413 COG1674 FtsK DNA segregation A 94.6 0.028 6.1E-07 65.8 4.0 80 188-268 639-718 (858)
414 PRK13948 shikimate kinase; Pro 94.6 0.04 8.6E-07 52.3 4.3 33 81-115 10-42 (182)
415 PRK03731 aroL shikimate kinase 94.6 0.037 8.1E-07 51.4 4.1 29 82-110 3-31 (171)
416 TIGR03600 phage_DnaB phage rep 94.6 0.22 4.7E-06 53.6 10.5 52 80-133 193-248 (421)
417 COG0703 AroK Shikimate kinase 94.6 0.036 7.7E-07 51.8 3.8 32 82-113 3-34 (172)
418 TIGR02173 cyt_kin_arch cytidyl 94.6 0.036 7.8E-07 51.2 3.9 26 84-109 3-28 (171)
419 PRK05057 aroK shikimate kinase 94.6 0.036 7.7E-07 52.0 3.9 30 82-111 5-34 (172)
420 PF08298 AAA_PrkA: PrkA AAA do 94.6 0.053 1.1E-06 56.2 5.4 66 58-123 61-132 (358)
421 COG1124 DppF ABC-type dipeptid 94.5 0.19 4E-06 49.4 8.7 44 188-234 159-202 (252)
422 PRK04182 cytidylate kinase; Pr 94.5 0.039 8.3E-07 51.4 4.0 26 84-109 3-28 (180)
423 COG0467 RAD55 RecA-superfamily 94.5 0.06 1.3E-06 53.8 5.6 47 79-127 21-70 (260)
424 TIGR03499 FlhF flagellar biosy 94.5 0.18 3.9E-06 51.2 9.0 36 83-118 196-236 (282)
425 TIGR00959 ffh signal recogniti 94.5 0.38 8.3E-06 51.7 11.8 36 84-119 102-141 (428)
426 PF02367 UPF0079: Uncharacteri 94.5 0.035 7.7E-07 49.1 3.3 27 81-107 15-41 (123)
427 TIGR00614 recQ_fam ATP-depende 94.5 0.25 5.4E-06 53.9 10.6 48 188-237 127-175 (470)
428 PRK10867 signal recognition pa 94.4 0.41 9E-06 51.5 12.0 52 68-119 80-142 (433)
429 PRK08154 anaerobic benzoate ca 94.4 0.074 1.6E-06 54.8 6.1 31 80-110 132-162 (309)
430 PF06414 Zeta_toxin: Zeta toxi 94.4 0.042 9.1E-07 52.7 4.0 47 83-129 17-64 (199)
431 cd01129 PulE-GspE PulE/GspE Th 94.4 0.063 1.4E-06 54.0 5.5 42 62-106 64-105 (264)
432 PHA02530 pseT polynucleotide k 94.4 0.041 8.8E-07 56.1 4.1 32 83-115 4-35 (300)
433 PF10923 DUF2791: P-loop Domai 94.4 0.23 4.9E-06 53.0 9.8 76 58-133 25-111 (416)
434 PRK05541 adenylylsulfate kinas 94.4 0.052 1.1E-06 50.8 4.4 33 81-113 7-42 (176)
435 PRK14733 coaE dephospho-CoA ki 94.4 0.055 1.2E-06 52.3 4.7 50 83-134 8-61 (204)
436 PRK09270 nucleoside triphospha 94.4 0.074 1.6E-06 52.2 5.7 60 62-121 7-77 (229)
437 PF00406 ADK: Adenylate kinase 94.4 0.032 6.9E-07 50.9 2.9 27 86-114 1-27 (151)
438 PRK10078 ribose 1,5-bisphospho 94.3 0.041 8.8E-07 52.1 3.7 26 83-108 4-29 (186)
439 PRK14722 flhF flagellar biosyn 94.3 0.26 5.6E-06 52.0 9.9 37 81-117 137-178 (374)
440 COG4618 ArpD ABC-type protease 94.3 0.3 6.4E-06 52.8 10.2 45 186-234 488-532 (580)
441 cd02028 UMPK_like Uridine mono 94.3 0.053 1.2E-06 51.2 4.3 36 84-119 2-40 (179)
442 PRK00091 miaA tRNA delta(2)-is 94.3 0.045 9.8E-07 56.2 4.1 36 82-117 5-40 (307)
443 cd03243 ABC_MutS_homologs The 94.3 0.023 5E-07 54.6 1.9 22 82-103 30-51 (202)
444 PRK05703 flhF flagellar biosyn 94.2 0.6 1.3E-05 50.3 12.7 37 82-118 222-263 (424)
445 PF08477 Miro: Miro-like prote 94.2 0.04 8.6E-07 47.5 3.1 22 84-105 2-23 (119)
446 PRK13851 type IV secretion sys 94.2 0.038 8.2E-07 57.7 3.4 27 80-106 161-187 (344)
447 TIGR00750 lao LAO/AO transport 94.2 0.066 1.4E-06 54.9 5.1 50 67-116 20-72 (300)
448 PF01745 IPT: Isopentenyl tran 94.2 0.05 1.1E-06 52.5 3.9 36 84-119 4-39 (233)
449 PRK12339 2-phosphoglycerate ki 94.2 0.054 1.2E-06 52.0 4.2 27 83-109 5-31 (197)
450 PF00437 T2SE: Type II/IV secr 94.1 0.031 6.7E-07 56.1 2.6 26 81-106 127-152 (270)
451 TIGR03574 selen_PSTK L-seryl-t 94.1 0.054 1.2E-06 53.8 4.3 31 84-114 2-35 (249)
452 PRK13900 type IV secretion sys 94.1 0.045 9.7E-07 56.9 3.8 27 80-106 159-185 (332)
453 COG1122 CbiO ABC-type cobalt t 94.1 0.21 4.6E-06 49.3 8.3 44 188-234 156-199 (235)
454 cd00071 GMPK Guanosine monopho 94.1 0.055 1.2E-06 48.7 3.9 26 84-109 2-27 (137)
455 PRK05480 uridine/cytidine kina 94.1 0.073 1.6E-06 51.3 4.9 36 83-118 8-44 (209)
456 COG4178 ABC-type uncharacteriz 94.1 0.094 2E-06 58.1 6.3 27 79-105 417-443 (604)
457 COG2805 PilT Tfp pilus assembl 94.0 0.064 1.4E-06 54.2 4.5 27 80-106 124-150 (353)
458 TIGR02322 phosphon_PhnN phosph 94.0 0.046 1E-06 51.2 3.4 25 83-107 3-27 (179)
459 PHA02774 E1; Provisional 94.0 0.099 2.1E-06 57.6 6.3 33 82-114 435-468 (613)
460 KOG1808 AAA ATPase containing 94.0 0.12 2.7E-06 63.5 7.7 157 82-283 441-614 (1856)
461 PRK06761 hypothetical protein; 94.0 0.059 1.3E-06 54.6 4.2 32 83-114 5-36 (282)
462 PRK14526 adenylate kinase; Pro 94.0 0.056 1.2E-06 52.5 3.9 27 84-110 3-29 (211)
463 TIGR02868 CydC thiol reductant 94.0 0.26 5.6E-06 54.5 9.7 36 79-114 359-396 (529)
464 COG0194 Gmk Guanylate kinase [ 94.0 0.06 1.3E-06 50.8 3.9 24 83-106 6-29 (191)
465 cd00268 DEADc DEAD-box helicas 94.0 0.61 1.3E-05 44.2 11.1 39 62-105 22-61 (203)
466 PLN02199 shikimate kinase 94.0 0.11 2.5E-06 52.7 6.2 44 66-110 88-131 (303)
467 PF13555 AAA_29: P-loop contai 93.9 0.059 1.3E-06 41.6 3.2 23 83-105 25-47 (62)
468 PF04851 ResIII: Type III rest 93.9 0.07 1.5E-06 49.3 4.4 64 63-131 5-70 (184)
469 TIGR00174 miaA tRNA isopenteny 93.9 0.064 1.4E-06 54.5 4.3 35 84-118 2-36 (287)
470 PF01078 Mg_chelatase: Magnesi 93.8 0.11 2.5E-06 50.0 5.6 25 82-106 23-47 (206)
471 PF03205 MobB: Molybdopterin g 93.8 0.063 1.4E-06 48.6 3.7 32 83-114 2-37 (140)
472 COG1066 Sms Predicted ATP-depe 93.8 0.13 2.7E-06 54.2 6.2 52 67-118 79-132 (456)
473 cd03246 ABCC_Protease_Secretio 93.8 0.25 5.4E-06 46.1 7.8 27 80-106 27-53 (173)
474 KOG1803 DNA helicase [Replicat 93.8 0.051 1.1E-06 59.3 3.4 24 82-105 202-225 (649)
475 PRK09435 membrane ATPase/prote 93.7 0.17 3.6E-06 52.6 7.1 51 65-115 40-93 (332)
476 cd03223 ABCD_peroxisomal_ALDP 93.7 0.36 7.8E-06 44.8 8.7 27 80-106 26-52 (166)
477 PRK00889 adenylylsulfate kinas 93.7 0.083 1.8E-06 49.3 4.4 35 81-115 4-41 (175)
478 PTZ00424 helicase 45; Provisio 93.7 0.41 8.8E-06 50.8 10.2 38 63-105 52-90 (401)
479 COG0324 MiaA tRNA delta(2)-iso 93.6 0.12 2.5E-06 52.9 5.6 37 82-118 4-40 (308)
480 PRK13709 conjugal transfer nic 93.6 0.21 4.6E-06 62.0 8.8 39 64-105 970-1008(1747)
481 cd03282 ABC_MSH4_euk MutS4 hom 93.6 0.082 1.8E-06 51.1 4.4 21 82-102 30-50 (204)
482 TIGR01618 phage_P_loop phage n 93.6 0.043 9.4E-07 53.6 2.4 21 82-102 13-33 (220)
483 PRK11176 lipid transporter ATP 93.6 0.37 8E-06 53.9 10.2 36 79-114 367-404 (582)
484 COG4650 RtcR Sigma54-dependent 93.6 0.25 5.5E-06 49.7 7.7 85 52-141 178-269 (531)
485 PLN02748 tRNA dimethylallyltra 93.6 0.25 5.4E-06 53.6 8.3 32 82-115 23-54 (468)
486 PHA02542 41 41 helicase; Provi 93.5 0.49 1.1E-05 51.6 10.7 48 81-130 190-240 (473)
487 PF01443 Viral_helicase1: Vira 93.5 0.054 1.2E-06 52.7 2.9 22 84-105 1-22 (234)
488 PRK12727 flagellar biosynthesi 93.5 0.54 1.2E-05 51.6 10.7 38 81-118 350-392 (559)
489 cd03214 ABC_Iron-Siderophores_ 93.5 0.42 9.2E-06 44.8 8.9 36 80-115 24-61 (180)
490 PF12780 AAA_8: P-loop contain 93.5 0.27 5.9E-06 49.5 7.9 44 67-113 20-63 (268)
491 TIGR02533 type_II_gspE general 93.5 0.1 2.2E-06 57.2 5.2 42 62-106 226-267 (486)
492 COG2019 AdkA Archaeal adenylat 93.4 0.072 1.6E-06 49.4 3.3 30 83-113 6-35 (189)
493 TIGR02030 BchI-ChlI magnesium 93.4 0.13 2.7E-06 53.7 5.6 45 59-106 5-50 (337)
494 PRK11776 ATP-dependent RNA hel 93.4 0.4 8.6E-06 52.1 9.8 38 64-106 29-67 (460)
495 PF03029 ATP_bind_1: Conserved 93.4 0.07 1.5E-06 52.8 3.6 30 86-115 1-33 (238)
496 PRK12726 flagellar biosynthesi 93.4 0.68 1.5E-05 48.9 10.9 38 82-119 207-247 (407)
497 cd01131 PilT Pilus retraction 93.4 0.064 1.4E-06 51.4 3.2 24 83-106 3-26 (198)
498 cd01125 repA Hexameric Replica 93.4 0.4 8.7E-06 47.2 8.9 33 84-116 4-51 (239)
499 PRK14529 adenylate kinase; Pro 93.4 0.069 1.5E-06 52.3 3.4 28 83-110 2-29 (223)
500 KOG0920 ATP-dependent RNA heli 93.4 0.34 7.4E-06 56.2 9.3 144 67-236 178-331 (924)
No 1
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=100.00 E-value=4.4e-88 Score=674.02 Aligned_cols=430 Identities=34% Similarity=0.554 Sum_probs=349.7
Q ss_pred HHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 55 DLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
.+...+||||.||..|.+++++.....|+ ++|||..|||||.++++++++++.+++|+||.+|+|.+.++++|++++.-
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhcc
Confidence 45668999999999999999987665665 69999999999999999999999999999999999999999999999941
Q ss_pred ccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
. +..|......|+++++|+..+.+.=+. ++.+.+++||||++|.|++++ ..+|+.|
T Consensus 83 ~---d~dg~~~~~~~en~~d~i~~l~q~~~~-------------------t~~d~~~~liLDnad~lrD~~--a~ll~~l 138 (438)
T KOG2543|consen 83 A---DKDGDKVEGDAENFSDFIYLLVQWPAA-------------------TNRDQKVFLILDNADALRDMD--AILLQCL 138 (438)
T ss_pred C---CCchhhhhhHHHHHHHHHHHHHhhHHh-------------------hccCceEEEEEcCHHhhhccc--hHHHHHH
Confidence 1 123333233467888887766542211 123578999999999999877 8999999
Q ss_pred HccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCC---ChhhhhHHHHhhhhccccccc
Q 009415 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA---NQKLYSSFLDIVLRPFCRITK 290 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~---~~~l~~~f~~~vl~~~~~~~r 290 (535)
++|+|+.+.+.+.+|++....+..|..++|...|..+|||.|+.+|+++|+.+.+| ..++|.+|++.++.+|+.+||
T Consensus 139 ~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr 218 (438)
T KOG2543|consen 139 FRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR 218 (438)
T ss_pred HHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC
Confidence 99999998875555555555455556789988999999999999999999998887 467899999999999999999
Q ss_pred cHHHHHHHHHHhhhhhhhhhccCCCCCChHhHHHHhhhhhhhHHhhHhHhhhccCCCccccCCcccccccCCCcccCCCC
Q 009415 291 RVDELSTAFSLLFKRYCEPLSDLGVLPNGEMKRRLFSHLQPHIAPSLNEIFRVASQPCLECGVNQETRRKGGARKSVGSG 370 (535)
Q Consensus 291 dl~eL~~~~~~L~~~y~~Pv~~~~~~~~~~~~~~L~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (535)
|+.+|+.++...||+||+|+.+|++.|.+ +++||++++|++...++.+|.+...++ +.+ ..+...-++..++
T Consensus 219 d~~eL~~~~~~~wpky~epi~~~~i~~~d--~~~L~r~ik~~L~~~~~~~~~~e~~~s-~~e-----~~~~~~~~~~~r~ 290 (438)
T KOG2543|consen 219 DVNELRSLISLAWPKYCEPITKGKIDPTD--KARLWRHIKPFLGSDLNEIYRREIESS-EDE-----NRLAMEDKSLNRK 290 (438)
T ss_pred CHHHHHHHHHHHHHhhccccccCCCChhH--HHHHHHHhhHhhhhhhHHHHHhcCchh-hhh-----hhhhhhhhhhhhh
Confidence 99999999999999999999999999998 789999999999999999998744322 111 1110011112222
Q ss_pred CCCCcccCcchhhhHHhhHhhhhcCCCCCcccccc-cccCCCCccccccccchhhHHHHHHHHHHHHhcCCCcchHHHHH
Q 009415 371 DLDDIGFHMSTSAKYLLVSAFLASRNPATLDASLF-DTTGVSDSRKRKRKASEKSLEQKEAAEQELLMKGPGTFSLERLL 449 (535)
Q Consensus 371 ~~~~~~~~Lp~~sK~LLiAAYLAS~Np~~~D~~lF-~k~~~~~~~kRkr~~~~~~~~~~~~~~~~~~llgP~~F~LeRLL 449 (535)
.+...+++||++|||||||||||||||+|+|+++| .|.+| |+||| +++.+.+.++++.. .-+|||+|+|||||
T Consensus 291 ~~~~~~i~ls~ysKyLLIAAylASyNpar~DarfFs~K~hg---rqrk~--~~~~~~~~~t~~~~-s~LGPk~F~leRLL 364 (438)
T KOG2543|consen 291 LVALSEIELSYYSKYLLIAAYLASYNPARLDARFFSVKHHG---RQRKR--SEKLEKRLETNPRA-SDLGPKSFPLERLL 364 (438)
T ss_pred hhccccccchHHHHHHHHHHHHhccCchhccchhhhcccch---HHHHH--hHHHHhhhhcCccc-cccCCCcccHHHHH
Confidence 22445689999999999999999999999999999 55554 34443 33333333454432 12999999999999
Q ss_pred HHHHHHhccCccccCCCCcccccccchhhHHHHHHHHhhhhccccccc-CCCCCCCCccEEEecCHHHHHHHHHhcCccc
Q 009415 450 AIFQCITSVGEEEEGNDGLRVDEGSNALMSDILLQLTSLCNSNFIVNG-GSCPLEGSTRYRSTLSEDLAMKVARSIKFPL 528 (535)
Q Consensus 450 AIf~aI~~~~~~~~~~~~~~~e~~~~~l~~dv~~qiatL~sl~Ll~~~-~~d~l~~~~k~kcnv~~e~i~~iA~sv~f~l 528 (535)
||||||++.++ .+.+++|||+||+||++||||+.+ +.|.||+++||||||+||+|++||+||+|||
T Consensus 365 AIf~aI~~i~e-------------~~~lt~dlfsqIssL~sl~ll~~t~~~~~LdgspRykc~VslE~~lkIa~Sl~F~l 431 (438)
T KOG2543|consen 365 AIFYAILSINE-------------SVILTADLFSQISSLVSLKLLSVTSNRDNLDGSPRYKCNVSLEFALKIARSLNFNL 431 (438)
T ss_pred HHHHHHhChhh-------------hhcchhHHHHHHHHHHhhcchheecccccCCCCcceEEecCHHHHHHHHHHcCcCH
Confidence 99999998532 477889999999999999999987 6899999999999999999999999999999
Q ss_pred ccccccC
Q 009415 529 SKYLYRR 535 (535)
Q Consensus 529 ~~YL~~~ 535 (535)
++||+|.
T Consensus 432 ~~YL~d~ 438 (438)
T KOG2543|consen 432 SKYLYDF 438 (438)
T ss_pred HHHhccC
Confidence 9999973
No 2
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=100.00 E-value=3.5e-62 Score=490.95 Aligned_cols=259 Identities=29% Similarity=0.529 Sum_probs=208.1
Q ss_pred EecCCCCHHHHHHHHhhcCCC----------hhhhhHHHHhhhhcccccc-ccHHHHHHHHHHhhhhhhhhhccCCCCCC
Q 009415 250 VYFPECTEDDLRQIFMRNQAN----------QKLYSSFLDIVLRPFCRIT-KRVDELSTAFSLLFKRYCEPLSDLGVLPN 318 (535)
Q Consensus 250 I~FppYt~~el~~IL~~~~~~----------~~l~~~f~~~vl~~~~~~~-rdl~eL~~~~~~L~~~y~~Pv~~~~~~~~ 318 (535)
|+||+||++|+.+||...+++ .+||.+|+..++++|+.+| +|+.+|+++|..+||+||+||.+|++.++
T Consensus 1 I~Fp~Ys~~e~~~IL~~~~~~~~~~~~~~~~~~ly~~f~~~i~~~~~~~~~rdl~eL~~i~~~lwp~y~~Pi~~g~~~~~ 80 (271)
T PF14630_consen 1 IYFPPYSKDELLEILSLDQPSELPDLPDDIDRELYNQFVNLILDSFYSYTGRDLNELRHIAAKLWPKYVEPILEGEIDPS 80 (271)
T ss_pred CcCCCCCHHHHHHHHhhCCCcccccccchHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhcccCCChh
Confidence 799999999999999998865 5799999999999999999 89999999999999999999999999988
Q ss_pred hHhHHHHhhhhhhhHHhhHhHhhhccCCCccccCCcccccccCCCcccCCCCCCCCcccCcchhhhHHhhHhhhhcCCCC
Q 009415 319 GEMKRRLFSHLQPHIAPSLNEIFRVASQPCLECGVNQETRRKGGARKSVGSGDLDDIGFHMSTSAKYLLVSAFLASRNPA 398 (535)
Q Consensus 319 ~~~~~~L~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~sK~LLiAAYLAS~Np~ 398 (535)
++ .+||++++|+++..++.+|.+...+. +....+. ..... ...........++||++|||||||||||||||+
T Consensus 81 ~~--~~L~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~~~~~Lp~~sK~LLIAAYLAS~Np~ 153 (271)
T PF14630_consen 81 DF--SKLYRAIRPLFRSALESLYNRSISSS-QWESAQS--QENSP--SSSSQSNSSQSFELPYYSKYLLIAAYLASYNPP 153 (271)
T ss_pred HH--HHHHHHHHHHHHHHHHHHccCccccc-ccccccc--ccccc--cccccccccccccCcHHHHHHHHHHHHHhcCCh
Confidence 84 58999999999999999986544321 1111000 00000 011111134568899999999999999999999
Q ss_pred CcccccccccCCCCccccccccchhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhccCccccCCCCcccccccchhh
Q 009415 399 TLDASLFDTTGVSDSRKRKRKASEKSLEQKEAAEQELLMKGPGTFSLERLLAIFQCITSVGEEEEGNDGLRVDEGSNALM 478 (535)
Q Consensus 399 ~~D~~lF~k~~~~~~~kRkr~~~~~~~~~~~~~~~~~~llgP~~F~LeRLLAIf~aI~~~~~~~~~~~~~~~e~~~~~l~ 478 (535)
++|+++|+|.++ |||||+++. ..++++ ..++++||++|+||||||||+||+++.+. .....+
T Consensus 154 ~~D~r~F~k~~~---r~~kr~~~~--~~~~~~--~~~~llgP~~F~LeRLLAIf~aI~~~~~~-----------~~~~~~ 215 (271)
T PF14630_consen 154 RTDKRLFSKKKG---RKRKRKRGR--RRKKEK--ISQRLLGPKPFPLERLLAIFYAILPEEVA-----------EELNSS 215 (271)
T ss_pred hHHHHHHHhccc---cccccccch--hhhhhh--hhhhccCCCcccHHHHHHHHHHHHhhccc-----------cccccc
Confidence 999999999986 233333221 111222 44679999999999999999999986321 013457
Q ss_pred HHHHHHHHhhhhcccccc-cCCCCCCCCccEEEecCHHHHHHHHHhcCcccccccc
Q 009415 479 SDILLQLTSLCNSNFIVN-GGSCPLEGSTRYRSTLSEDLAMKVARSIKFPLSKYLY 533 (535)
Q Consensus 479 ~dv~~qiatL~sl~Ll~~-~~~d~l~~~~k~kcnv~~e~i~~iA~sv~f~l~~YL~ 533 (535)
+|||+||+||++||||++ ++.|.||+++||||||+||+|+.||++|||||++|||
T Consensus 216 ~dv~~qIatL~sL~Ll~~~s~~d~Ld~~~k~rcnvs~e~i~~iA~sv~f~l~~YL~ 271 (271)
T PF14630_consen 216 ADVFSQIATLVSLRLLSRASSGDPLDGSPKWRCNVSWEFIREIAKSVGFDLDEYLY 271 (271)
T ss_pred hHHHHHHHHHHhCCCeeecCCCCccCCCCceEEECCHHHHHHHHHHcCcCHHHhcC
Confidence 899999999999999999 4579999889999999999999999999999999996
No 3
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.2e-24 Score=221.72 Aligned_cols=190 Identities=22% Similarity=0.356 Sum_probs=145.4
Q ss_pred cccCCCC-CHHHHhhcCCChHHHHHHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHhcCCC-----eEEEeccc
Q 009415 45 VFGQEPI-SLDDLLSRFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHLSRP-----FVYTSCLS 116 (535)
Q Consensus 45 ~f~~~~~-~~~~l~~~~p~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~-----~~yVnc~~ 116 (535)
+|.+... ..+.+|+.+|+||.|+.+|..+|.+.. ..+.+++|||+||||||++++.+++++... ++||||.+
T Consensus 3 i~~n~~vl~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~ 82 (366)
T COG1474 3 IFKNKDVLLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE 82 (366)
T ss_pred ccccccccCCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee
Confidence 3444433 345688999999999999999998863 344569999999999999999999998633 89999999
Q ss_pred cCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeC
Q 009415 117 CYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDN 196 (535)
Q Consensus 117 ~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe 196 (535)
..|+..+|..|++++... +..+.+..++...+.+.+. ..+..+||||||
T Consensus 83 ~~t~~~i~~~i~~~~~~~----------p~~g~~~~~~~~~l~~~~~---------------------~~~~~~IvvLDE 131 (366)
T COG1474 83 LRTPYQVLSKILNKLGKV----------PLTGDSSLEILKRLYDNLS---------------------KKGKTVIVILDE 131 (366)
T ss_pred CCCHHHHHHHHHHHcCCC----------CCCCCchHHHHHHHHHHHH---------------------hcCCeEEEEEcc
Confidence 999999999999999621 2223344444444433332 145789999999
Q ss_pred CcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCc--cccccCCC-CCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 197 FELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTYHSNTG-YVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 197 ~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~--~~f~~~~g-~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+|.|.+.+ .++||.|+|+++.. ..++.+|+|+|+.+ +.+-++.. ...|.+|+||||+.+|+.+||..+.
T Consensus 132 id~L~~~~--~~~LY~L~r~~~~~-~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 132 VDALVDKD--GEVLYSLLRAPGEN-KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred hhhhcccc--chHHHHHHhhcccc-ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 99998744 48999999998876 35788999999873 22223332 4455689999999999999999765
No 4
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.89 E-value=6.8e-22 Score=216.96 Aligned_cols=184 Identities=20% Similarity=0.270 Sum_probs=133.5
Q ss_pred HHHhhcCCChHHHHHHHHHHHhccC-CCCC-C-eEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCCH
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTLN-SSMP-P-LFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYSP 120 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~~-~~~~-~-l~I~G~~GTGKTs~v~~vl~~l~----------~~~~yVnc~~~~s~ 120 (535)
+.+|+.+||||.|+++|..+|.+.. +..+ . +||||+||||||++|+.|+++|. +.++||||+...++
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 4678999999999999999998853 2233 3 68999999999999999998872 56899999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccc
Q 009415 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (535)
Q Consensus 121 r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L 200 (535)
..+|..|+++|.+..+ ..|. ...+ .|..++ ..+. ...+...||||||+|.|
T Consensus 831 ~sIYqvI~qqL~g~~P--~~Gl-------sS~e---vLerLF----~~L~-------------k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKP--PNAL-------NSFK---ILDRLF----NQNK-------------KDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHHHHcCCCC--Cccc-------cHHH---HHHHHH----hhhh-------------cccccceEEEeehHhhh
Confidence 9999999999965321 1111 1111 222222 2210 01335679999999999
Q ss_pred ccccCCCChHHHHHccccccCCCcEEEEEEeCCC--ccccccCCCC-CCCeeEecCCCCHHHHHHHHhhcCC
Q 009415 201 REWDKSSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGY-VAPIHVYFPECTEDDLRQIFMRNQA 269 (535)
Q Consensus 201 ~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~~~g~-~~p~~I~FppYt~~el~~IL~~~~~ 269 (535)
... .+++|+.|+++..... ..++||+|++.. ++.+.+++.+ +.+..|.|+||+.+|+.+||..+..
T Consensus 882 ~kK--~QDVLYnLFR~~~~s~-SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 882 ITK--TQKVLFTLFDWPTKIN-SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred Ccc--HHHHHHHHHHHhhccC-CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 752 4789999999877543 568899999864 4444443321 1224699999999999999987753
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.87 E-value=3.2e-21 Score=202.14 Aligned_cols=188 Identities=22% Similarity=0.294 Sum_probs=134.8
Q ss_pred CHHHHhhcCCChHHHHHHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHhcC---------CCeEEEeccccCCH
Q 009415 52 SLDDLLSRFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHLS---------RPFVYTSCLSCYSP 120 (535)
Q Consensus 52 ~~~~l~~~~p~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~l~---------~~~~yVnc~~~~s~ 120 (535)
..+.+|+.++|||+|+++|...+.+.. ..+++++|+||||||||++++.+++++. +.++||||..+.+.
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 456788999999999999999998742 3456799999999999999999998763 57899999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccc
Q 009415 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (535)
Q Consensus 121 r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L 200 (535)
..+|..|++++... |...+.++.+..+.... +. +.++ ..++++||||||+|.|
T Consensus 89 ~~~~~~i~~~l~~~------~~~~~~~~~~~~~~~~~---l~----~~l~--------------~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 89 YQVLVELANQLRGS------GEEVPTTGLSTSEVFRR---LY----KELN--------------ERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHHHhhc------CCCCCCCCCCHHHHHHH---HH----HHHH--------------hcCCeEEEEECchhhh
Confidence 99999999999530 11112233333332222 22 2111 1346789999999999
Q ss_pred ccccCCCChHHHHHccccc--cCCCcEEEEEEeCCCc--cccccCCC-CCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 201 REWDKSSSILPFLFGLSDI--LKMPEVGMIFISSTSP--DTYHSNTG-YVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 201 ~~~d~~~~lL~~L~rL~E~--~~~~~l~vI~Is~~~~--~~f~~~~g-~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.. ...++|+.|+++.+. ....++++|+|+|.+. +.+.++.. .+.+..|+|+||+.+|+.+||..+.
T Consensus 142 ~~--~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 142 VG--DDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred cc--CCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 63 236789999998433 2225689999998762 22322221 2234689999999999999998764
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.87 E-value=3.8e-21 Score=203.78 Aligned_cols=194 Identities=24% Similarity=0.331 Sum_probs=141.2
Q ss_pred cccCCCC-CHHHHhhcCCChHHHHHHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccc
Q 009415 45 VFGQEPI-SLDDLLSRFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLS 116 (535)
Q Consensus 45 ~f~~~~~-~~~~l~~~~p~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~ 116 (535)
+|..... ..+.+|+.++|||+|+++|...+.+.. ..+++++|||+||||||++++.+++++ ++.++||||..
T Consensus 16 ~~~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 16 IFKDEEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred eeCChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 5654332 456689999999999999999997642 345679999999999999999999887 47899999999
Q ss_pred cCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeC
Q 009415 117 CYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDN 196 (535)
Q Consensus 117 ~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe 196 (535)
+.+...+|..|+.++.+.. .+.++.+..++...+.+.+. ..++++||||||
T Consensus 96 ~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~~~~~~~~l~---------------------~~~~~~viviDE 146 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHP--------PPSSGLSFDELFDKIAEYLD---------------------ERDRVLIVALDD 146 (394)
T ss_pred CCCHHHHHHHHHHHhcCCC--------CCCCCCCHHHHHHHHHHHHH---------------------hcCCEEEEEECC
Confidence 9999999999999996531 11223344444333322221 134679999999
Q ss_pred CcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCc--cccccCC-CCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 197 FELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTYHSNT-GYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 197 ~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~--~~f~~~~-g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+|.+.+. ...++++.|+++.+.....++++|+|++... +.+-++. ..+.+..|+|+||+.+|+.+||..+.
T Consensus 147 ~d~l~~~-~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 147 INYLFEK-EGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred HhHhhcc-CCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 9999722 2467899999876554334789999998751 2221211 12334689999999999999998654
No 7
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.85 E-value=1.5e-20 Score=201.38 Aligned_cols=181 Identities=20% Similarity=0.306 Sum_probs=142.1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhccCC---CCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCC
Q 009415 53 LDDLLSRFPGRRVQILELLRLLGTLNS---SMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYS 119 (535)
Q Consensus 53 ~~~l~~~~p~Re~qi~~L~~ll~~~~~---~~~~l~I~G~~GTGKTs~v~~vl~~l~----------~~~~yVnc~~~~s 119 (535)
+..+++.+||||.|..+|..++..... .+.++||+|.||||||.+|+.|++.|. +.|+.||++...+
T Consensus 391 ls~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 391 LSAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 456889999999999999999987532 345899999999999999999999774 6788899999999
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcc
Q 009415 120 PRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFEL 199 (535)
Q Consensus 120 ~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~ 199 (535)
++.+|+.|+.+|.+....|. -.+ ++|+..+.. +.+...++||+|||.|.
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~---------~al--------~~L~~~f~~--------------~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWD---------AAL--------EALNFRFTV--------------PKPKRSTTVVLIDELDI 519 (767)
T ss_pred HHHHHHHHHHhcccCcccHH---------HHH--------HHHHHhhcc--------------CCCCCCCEEEEeccHHH
Confidence 99999999999987643221 111 122221111 23456789999999999
Q ss_pred cccccCCCChHHHHHccccccCCCcEEEEEEeCCC--cccccc-----CCCCCCCeeEecCCCCHHHHHHHHhhcCCC
Q 009415 200 VREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHS-----NTGYVAPIHVYFPECTEDDLRQIFMRNQAN 270 (535)
Q Consensus 200 L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~-----~~g~~~p~~I~FppYt~~el~~IL~~~~~~ 270 (535)
|.. ..+++||.||.|+.+-. ..+.||.|+|++ |++.+. ++|. ..|.|.|||++|+++|+..+...
T Consensus 520 Lvt--r~QdVlYn~fdWpt~~~-sKLvvi~IaNTmdlPEr~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 520 LVT--RSQDVLYNIFDWPTLKN-SKLVVIAIANTMDLPERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred Hhc--ccHHHHHHHhcCCcCCC-CceEEEEecccccCHHHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhhcc
Confidence 986 44899999999987753 568888899886 777764 4554 58999999999999999987643
No 8
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2e-19 Score=185.49 Aligned_cols=178 Identities=21% Similarity=0.330 Sum_probs=133.8
Q ss_pred hhcCCChHHHHHHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHHHHHHHH
Q 009415 57 LSRFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRILFESILN 129 (535)
Q Consensus 57 ~~~~p~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~l~-----~~~~yVnc~~~~s~r~l~~~Il~ 129 (535)
++.++|||.|...+..++..+. ..++++||+|.||||||..+..++..++ ...+||||.+..++..+|..|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 5789999999999999998764 3567899999999999999999998875 35699999999999999999999
Q ss_pred HHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCCh
Q 009415 130 QLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI 209 (535)
Q Consensus 130 ~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~l 209 (535)
.+....... + ...+ ++..|..+.+ ....++++|+||+|+|...+ +.+
T Consensus 229 ~~~q~~~s~---------~-~~~~-------~~~~~~~h~~--------------q~k~~~llVlDEmD~L~tr~--~~v 275 (529)
T KOG2227|consen 229 SLLQDLVSP---------G-TGMQ-------HLEKFEKHTK--------------QSKFMLLLVLDEMDHLITRS--QTV 275 (529)
T ss_pred HHHHHhcCC---------c-hhHH-------HHHHHHHHHh--------------cccceEEEEechhhHHhhcc--cce
Confidence 995432110 0 1122 2222222211 13369999999999998754 899
Q ss_pred HHHHHccccccCCCcEEEEEEeCC--CccccccCCC---CCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 210 LPFLFGLSDILKMPEVGMIFISST--SPDTYHSNTG---YVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 210 L~~L~rL~E~~~~~~l~vI~Is~~--~~~~f~~~~g---~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
||.||.|+.+.. .++.+|.|+|. ..++|+++.. ...|..++|+|||++||.+||..+-
T Consensus 276 Ly~lFewp~lp~-sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 276 LYTLFEWPKLPN-SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred eeeehhcccCCc-ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 999998888742 23444445554 3778887653 3567899999999999999998764
No 9
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=5.1e-11 Score=127.11 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=114.4
Q ss_pred ccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHH
Q 009415 46 FGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRI 122 (535)
Q Consensus 46 f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~ 122 (535)
-.-+|..++++. |-+..+..|...+... ..++ ++++||+|||||++++.+++.++... ....|..|.+.+.
T Consensus 10 ~KyRP~~f~dvV----GQe~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 10 RKYRPQFFRDVI----HQDLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred HHhCCCCHHHHh----ChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 345677788554 4588888888888763 3454 79999999999999999999987432 2346888877665
Q ss_pred HHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
+...+...+... ++. ....+. .++++.+.+... ...++..|+||||+|+|.
T Consensus 84 i~~g~~~dviEI-----daa----s~~gVd----~IReL~e~l~~~---------------p~~g~~KV~IIDEah~Ls- 134 (484)
T PRK14956 84 ITKGISSDVLEI-----DAA----SNRGIE----NIRELRDNVKFA---------------PMGGKYKVYIIDEVHMLT- 134 (484)
T ss_pred HHccCCccceee-----chh----hcccHH----HHHHHHHHHHhh---------------hhcCCCEEEEEechhhcC-
Confidence 554332222211 000 001122 233333332110 013356789999999995
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.+.+.+|++.-|..+ .++.+|++++.. ++.+.+|+ .+++|.+++.+++.+.|....
T Consensus 135 ----~~A~NALLKtLEEPp-~~viFILaTte~~kI~~TI~SRC-----q~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 135 ----DQSFNALLKTLEEPP-AHIVFILATTEFHKIPETILSRC-----QDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred ----HHHHHHHHHHhhcCC-CceEEEeecCChhhccHHHHhhh-----heeeecCCCHHHHHHHHHHHH
Confidence 345777777767643 467777777663 44555555 689999999999999987653
No 10
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.24 E-value=4.9e-11 Score=106.05 Aligned_cols=117 Identities=22% Similarity=0.401 Sum_probs=83.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc--------CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChh
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL--------SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPS 152 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l--------~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~ 152 (535)
...++|+|++|+|||++++.+++.+ ..++++++|....+.+.+++.|++++..... ...+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~ 73 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----------SRQTSD 73 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----------STS-HH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----------ccCCHH
Confidence 4579999999999999999999987 6788999999988999999999999975421 122344
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeC
Q 009415 153 DFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISS 232 (535)
Q Consensus 153 ~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~ 232 (535)
++...+.+.++ .....+|||||+|+|. + .+++..|..+.+ ..++++|+++.
T Consensus 74 ~l~~~~~~~l~----------------------~~~~~~lviDe~~~l~--~--~~~l~~l~~l~~---~~~~~vvl~G~ 124 (131)
T PF13401_consen 74 ELRSLLIDALD----------------------RRRVVLLVIDEADHLF--S--DEFLEFLRSLLN---ESNIKVVLVGT 124 (131)
T ss_dssp HHHHHHHHHHH----------------------HCTEEEEEEETTHHHH--T--HHHHHHHHHHTC---SCBEEEEEEES
T ss_pred HHHHHHHHHHH----------------------hcCCeEEEEeChHhcC--C--HHHHHHHHHHHh---CCCCeEEEEEC
Confidence 43333333332 1234899999999984 2 567777776666 35899999998
Q ss_pred CCcc
Q 009415 233 TSPD 236 (535)
Q Consensus 233 ~~~~ 236 (535)
...+
T Consensus 125 ~~l~ 128 (131)
T PF13401_consen 125 PELE 128 (131)
T ss_dssp STTT
T ss_pred hhhH
Confidence 7533
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.23 E-value=1.4e-10 Score=118.87 Aligned_cols=157 Identities=17% Similarity=0.293 Sum_probs=103.9
Q ss_pred CccccCCCCCHHHHhhc--CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCH
Q 009415 43 DLVFGQEPISLDDLLSR--FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSP 120 (535)
Q Consensus 43 ~~~f~~~~~~~~~l~~~--~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~ 120 (535)
-+.-+++|.+++++..+ +.|-+.-+ .+++.. +..+++++||||||||||+.+.+....+..|..+|+...
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~l---rr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--- 84 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPL---RRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--- 84 (436)
T ss_pred ChHHHhCCCCHHHhcChHhhhCCCchH---HHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc---
Confidence 45567889999987755 33333333 333332 356789999999999999999999999999999986332
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccc
Q 009415 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (535)
Q Consensus 121 r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L 200 (535)
++. .+++++++--.. ...++..||+|||++++
T Consensus 85 -----------------------------gvk----dlr~i~e~a~~~---------------~~~gr~tiLflDEIHRf 116 (436)
T COG2256 85 -----------------------------GVK----DLREIIEEARKN---------------RLLGRRTILFLDEIHRF 116 (436)
T ss_pred -----------------------------cHH----HHHHHHHHHHHH---------------HhcCCceEEEEehhhhc
Confidence 122 245555432111 12467899999999999
Q ss_pred ccccCCCChH-HHHHccccccCCCcEEEEEEeCCCcccccc-CCC-CCCCeeEecCCCCHHHHHHHHhh
Q 009415 201 REWDKSSSIL-PFLFGLSDILKMPEVGMIFISSTSPDTYHS-NTG-YVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 201 ~~~d~~~~lL-~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~-~~g-~~~p~~I~FppYt~~el~~IL~~ 266 (535)
-.. .++.| +.+ .+-.+|||+.++..+++. +.. ......+.|.|.+.++|.++|.+
T Consensus 117 nK~--QQD~lLp~v---------E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 117 NKA--QQDALLPHV---------ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred Chh--hhhhhhhhh---------cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 642 23433 322 356788888776444432 111 11126889999999999999987
No 12
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=6.6e-11 Score=130.92 Aligned_cols=177 Identities=13% Similarity=0.171 Sum_probs=111.9
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l 123 (535)
+-+|.++++ +.|.++-++.|.+.+... ..++ ++++|++|||||++++.+.+.+.... .-..|..|.+.+.+
T Consensus 9 KYRPqtFdE----VIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 9 KWRPKDFAS----LVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred HhCCCcHHH----HcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 346777774 456688899999988752 4455 57999999999999999999987432 12357777665543
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-+.-...+.. -+.. ....+. .++++++..... ...++.-|+||||+|.|..
T Consensus 83 ~~G~h~DviE-----IDAa----s~rgVD----dIReLIe~a~~~---------------P~~gr~KVIIIDEah~LT~- 133 (830)
T PRK07003 83 DEGRFVDYVE-----MDAA----SNRGVD----EMAALLERAVYA---------------PVDARFKVYMIDEVHMLTN- 133 (830)
T ss_pred hcCCCceEEE-----eccc----ccccHH----HHHHHHHHHHhc---------------cccCCceEEEEeChhhCCH-
Confidence 3211100000 0100 011222 234444332110 1123456888999999953
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.-+..|++.-|... .++.+||+++.. +..+++|+ ..|.|.+++.+|+.++|....
T Consensus 134 ----~A~NALLKtLEEPP-~~v~FILaTtd~~KIp~TIrSRC-----q~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 134 ----HAFNAMLKTLEEPP-PHVKFILATTDPQKIPVTVLSRC-----LQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred ----HHHHHHHHHHHhcC-CCeEEEEEECChhhccchhhhhe-----EEEecCCcCHHHHHHHHHHHH
Confidence 34677788766643 478999999875 33455555 799999999999999887543
No 13
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.20 E-value=9.5e-11 Score=112.79 Aligned_cols=159 Identities=23% Similarity=0.276 Sum_probs=87.3
Q ss_pred ccccCCCCCHHHHhhcCCChHHHHHHHHHHHhcc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCH
Q 009415 44 LVFGQEPISLDDLLSRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSP 120 (535)
Q Consensus 44 ~~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~ 120 (535)
+....+|..++ .|.|-++-+..+.-++... .+..+++++|||||+||||+++-+.++++..+.+++.....
T Consensus 14 l~~~lRP~~L~----efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~-- 87 (233)
T PF05496_consen 14 LAERLRPKSLD----EFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE-- 87 (233)
T ss_dssp HHHHTS-SSCC----CS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC----
T ss_pred hHHhcCCCCHH----HccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh--
Confidence 34455676666 6677788888877766542 24567899999999999999999999999888877752211
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccc
Q 009415 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (535)
Q Consensus 121 r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L 200 (535)
...| +..++.. + ++..||++||++++
T Consensus 88 -----------------------------k~~d----l~~il~~----l-----------------~~~~ILFIDEIHRl 113 (233)
T PF05496_consen 88 -----------------------------KAGD----LAAILTN----L-----------------KEGDILFIDEIHRL 113 (233)
T ss_dssp -----------------------------SCHH----HHHHHHT-----------------------TT-EEEECTCCC-
T ss_pred -----------------------------hHHH----HHHHHHh----c-----------------CCCcEEEEechhhc
Confidence 1222 2222221 1 12358999999999
Q ss_pred ccccCCCChHHHHHccccc---c-----------CCCcEEEEEEeCC---CccccccCCCCCCCeeEecCCCCHHHHHHH
Q 009415 201 REWDKSSSILPFLFGLSDI---L-----------KMPEVGMIFISST---SPDTYHSNTGYVAPIHVYFPECTEDDLRQI 263 (535)
Q Consensus 201 ~~~d~~~~lL~~L~rL~E~---~-----------~~~~l~vI~Is~~---~~~~f~~~~g~~~p~~I~FppYt~~el~~I 263 (535)
... .+++|+..+.=..+ . +++..++|..++. ....+..|.| ...++.-|+.+|+.+|
T Consensus 114 nk~--~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFg----i~~~l~~Y~~~el~~I 187 (233)
T PF05496_consen 114 NKA--QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFG----IVLRLEFYSEEELAKI 187 (233)
T ss_dssp -HH--HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSS----EEEE----THHHHHHH
T ss_pred cHH--HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcc----eecchhcCCHHHHHHH
Confidence 642 24555544321111 0 1334555554433 2334455555 5668889999999999
Q ss_pred HhhcC
Q 009415 264 FMRNQ 268 (535)
Q Consensus 264 L~~~~ 268 (535)
+.+..
T Consensus 188 v~r~a 192 (233)
T PF05496_consen 188 VKRSA 192 (233)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98764
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.19 E-value=2.7e-10 Score=118.04 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=97.4
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhcc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~ 125 (535)
.|..++ .|.||++++..|..++... ..+.++++||||||||||++++.+++.++..+.++++.....
T Consensus 20 rP~~~~----~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------ 89 (328)
T PRK00080 20 RPKSLD----EFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------ 89 (328)
T ss_pred CcCCHH----HhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------
Confidence 455555 7899999999998888642 234567999999999999999999999997776665432111
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
..+ +...+.. .+...||+|||+|.+...
T Consensus 90 -------------------------~~~----l~~~l~~---------------------l~~~~vl~IDEi~~l~~~-- 117 (328)
T PRK00080 90 -------------------------PGD----LAAILTN---------------------LEEGDVLFIDEIHRLSPV-- 117 (328)
T ss_pred -------------------------hHH----HHHHHHh---------------------cccCCEEEEecHhhcchH--
Confidence 111 1112211 112458889999998531
Q ss_pred CCChHHHHHccccc--------------cCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 SSSILPFLFGLSDI--------------LKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 ~~~lL~~L~rL~E~--------------~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
..+.|..++.-... ..++.+++|++++.. ...+.+|.+ ..+.|++|+.+|+.+||.+.
T Consensus 118 ~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~----~~~~l~~~~~~e~~~il~~~ 192 (328)
T PRK00080 118 VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFG----IVQRLEFYTVEELEKIVKRS 192 (328)
T ss_pred HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcC----eeeecCCCCHHHHHHHHHHH
Confidence 13333332211100 012456777766553 233444543 57899999999999999865
No 15
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.18 E-value=2.2e-10 Score=121.32 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=100.0
Q ss_pred hcCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
+.+.|++.|+.+|...+..+ ..++..+++|||||||||++++++++.++.+++.++|.+..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~-------- 202 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV-------- 202 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh--------
Confidence 47899999999999876431 12344699999999999999999999999999998875432
Q ss_pred HHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--
Q 009415 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-- 204 (535)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d-- 204 (535)
....+. . ...++.+++. .+ ...+.||+|||+|.|....
T Consensus 203 --~~~~g~---------------~----~~~i~~~f~~----a~---------------~~~p~IlfiDEiD~l~~~r~~ 242 (389)
T PRK03992 203 --QKFIGE---------------G----ARLVRELFEL----AR---------------EKAPSIIFIDEIDAIAAKRTD 242 (389)
T ss_pred --Hhhccc---------------h----HHHHHHHHHH----HH---------------hcCCeEEEEechhhhhccccc
Confidence 111110 0 1112223321 11 2246789999999984210
Q ss_pred C----CCCh---HHHHHc-cccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 205 K----SSSI---LPFLFG-LSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 205 ~----~~~l---L~~L~r-L~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
. ..++ +..|+. +.......++.||.++|.+ .+.++ +.|-+. ..|+|++++.++-.+||....
T Consensus 243 ~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~all-RpgRfd-~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 243 SGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAIL-RPGRFD-RIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred CCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHc-CCccCc-eEEEECCCCHHHHHHHHHHHh
Confidence 0 0112 223332 2222122468888888875 22222 333222 479999999999999998643
No 16
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.18 E-value=1.5e-10 Score=114.72 Aligned_cols=173 Identities=18% Similarity=0.207 Sum_probs=109.1
Q ss_pred cccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009415 45 VFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 45 ~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~ 124 (535)
.-.-.|.+++++..+ +..+.-|.+.+.. ...|++++|||||||||++++++.++|..+... .|.-|
T Consensus 27 teKYrPkt~de~~gQ----e~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~-~~rvl------- 92 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQ----EHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLF-PCRVL------- 92 (346)
T ss_pred HHHhCCCcHHhhcch----HHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCcccc-ccchh-------
Confidence 334567777755544 7888888887766 346889999999999999999999998531110 11111
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
+.- .+.+.|.+. -.++...|.... .... ...+.+....-||||||+|.|.
T Consensus 93 ----~ln----aSderGisv--vr~Kik~fakl~-~~~~----------------~~~~~~~~~fKiiIlDEcdsmt--- 142 (346)
T KOG0989|consen 93 ----ELN----ASDERGISV--VREKIKNFAKLT-VLLK----------------RSDGYPCPPFKIIILDECDSMT--- 142 (346)
T ss_pred ----hhc----ccccccccc--hhhhhcCHHHHh-hccc----------------cccCCCCCcceEEEEechhhhh---
Confidence 000 111233321 111222222210 0000 0112334455799999999995
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCC
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA 269 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~ 269 (535)
++-..+|.|..|-.. .+..+|||+|.. ++.+.+|+ ..++|++...+.+++.|..-+.
T Consensus 143 --sdaq~aLrr~mE~~s-~~trFiLIcnylsrii~pi~SRC-----~KfrFk~L~d~~iv~rL~~Ia~ 202 (346)
T KOG0989|consen 143 --SDAQAALRRTMEDFS-RTTRFILICNYLSRIIRPLVSRC-----QKFRFKKLKDEDIVDRLEKIAS 202 (346)
T ss_pred --HHHHHHHHHHHhccc-cceEEEEEcCChhhCChHHHhhH-----HHhcCCCcchHHHHHHHHHHHH
Confidence 355678888777643 478899999985 55666666 6899999999999999976543
No 17
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.17 E-value=3.8e-10 Score=116.92 Aligned_cols=213 Identities=14% Similarity=0.167 Sum_probs=113.2
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRIL 123 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~-----~~~~yVnc~~~~s~r~l 123 (535)
.|..++ .+.|++..+..|..++... ..|+++||||||||||++++.+++.+. .+++++||.+....
T Consensus 10 ~P~~~~----~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~--- 80 (337)
T PRK12402 10 RPALLE----DILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ--- 80 (337)
T ss_pred CCCcHH----HhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc---
Confidence 566666 4558899999999988653 346799999999999999999999873 35688888653211
Q ss_pred HHHHHHHHhhccccccCCCCCC-cCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSA-KRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~-~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
....+..+ +....-+... ...... ...++.++...... .......-+|||||+|.+.+
T Consensus 81 ---~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------~~~~~~~~vlilDe~~~l~~ 139 (337)
T PRK12402 81 ---GKKYLVED-PRFAHFLGTDKRIRSSK---IDNFKHVLKEYASY--------------RPLSADYKTILLDNAEALRE 139 (337)
T ss_pred ---chhhhhcC-cchhhhhhhhhhhccch---HHHHHHHHHHHHhc--------------CCCCCCCcEEEEeCcccCCH
Confidence 00011000 0000000000 000000 11222222221110 00112345899999998853
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhh
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVL 282 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl 282 (535)
.....|.++-|..+ .+..+|++++.+ ..+...... ....+.|+|++.+++.++|.......++ .+-..++
T Consensus 140 -----~~~~~L~~~le~~~-~~~~~Il~~~~~-~~~~~~L~s-r~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al 209 (337)
T PRK12402 140 -----DAQQALRRIMEQYS-RTCRFIIATRQP-SKLIPPIRS-RCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGL 209 (337)
T ss_pred -----HHHHHHHHHHHhcc-CCCeEEEEeCCh-hhCchhhcC-CceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 33455665545432 346677776653 233222111 1258999999999999999864322111 1112233
Q ss_pred hccccc-cccHHHHHHHHHH
Q 009415 283 RPFCRI-TKRVDELSTAFSL 301 (535)
Q Consensus 283 ~~~~~~-~rdl~eL~~~~~~ 301 (535)
..+... ..|+.++...+..
T Consensus 210 ~~l~~~~~gdlr~l~~~l~~ 229 (337)
T PRK12402 210 ELIAYYAGGDLRKAILTLQT 229 (337)
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 333332 3466666555543
No 18
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.16 E-value=2.1e-10 Score=117.40 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=45.2
Q ss_pred hcCCChHHHHHHHHHHHhcc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 58 SRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
+.|.||++++.+|...+... ...+++++||||||||||++++.+.+.++..+.+++
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 36899999999998888642 123457999999999999999999999986655444
No 19
>PLN03025 replication factor C subunit; Provisional
Probab=99.15 E-value=5.2e-10 Score=115.50 Aligned_cols=188 Identities=16% Similarity=0.213 Sum_probs=108.8
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-----CeEEEeccccCCHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-----PFVYTSCLSCYSPRI 122 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~-----~~~yVnc~~~~s~r~ 122 (535)
-+|..++++. |.++.+..|..++.. ...|++++|||||||||++++.+++++.. .+..+|+....+
T Consensus 7 yrP~~l~~~~----g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~--- 77 (319)
T PLN03025 7 YRPTKLDDIV----GNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG--- 77 (319)
T ss_pred cCCCCHHHhc----CcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc---
Confidence 4677777554 557788888877654 34578999999999999999999998731 122223211111
Q ss_pred HHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
.. .++..+..+.... . ....+..-||+|||+|.+..
T Consensus 78 ----------------------------~~----~vr~~i~~~~~~~-------~-----~~~~~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 78 ----------------------------ID----VVRNKIKMFAQKK-------V-----TLPPGRHKIVILDEADSMTS 113 (319)
T ss_pred ----------------------------HH----HHHHHHHHHHhcc-------c-----cCCCCCeEEEEEechhhcCH
Confidence 11 1222222211100 0 00123467889999999953
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhh--hhHH
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKL--YSSF 277 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l--~~~f 277 (535)
.--.+|.+..|..+ ....+|++++... +.+.+|+ ..+.|++++.+++.++|......+++ -+..
T Consensus 114 -----~aq~aL~~~lE~~~-~~t~~il~~n~~~~i~~~L~SRc-----~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~ 182 (319)
T PLN03025 114 -----GAQQALRRTMEIYS-NTTRFALACNTSSKIIEPIQSRC-----AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEG 182 (319)
T ss_pred -----HHHHHHHHHHhccc-CCceEEEEeCCccccchhHHHhh-----hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 22455666666643 3566888887642 2233443 58999999999999999865432221 1222
Q ss_pred HHhhhhccccccccHHHHHHHHHHh
Q 009415 278 LDIVLRPFCRITKRVDELSTAFSLL 302 (535)
Q Consensus 278 ~~~vl~~~~~~~rdl~eL~~~~~~L 302 (535)
+..++.. ..+|+..+...++..
T Consensus 183 l~~i~~~---~~gDlR~aln~Lq~~ 204 (319)
T PLN03025 183 LEAIIFT---ADGDMRQALNNLQAT 204 (319)
T ss_pred HHHHHHH---cCCCHHHHHHHHHHH
Confidence 2222222 234666655555533
No 20
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2.1e-10 Score=123.75 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=120.2
Q ss_pred ccccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCH
Q 009415 44 LVFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSP 120 (535)
Q Consensus 44 ~~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~ 120 (535)
+....+|..+++ +.|.++....|...+... ..++ +++||||||||||+++.+++.+... ..+..|..|.+.
T Consensus 4 l~~kyRP~~~~d----ivGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 4 LYRKYRPKTFSE----VVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred hHHHHCCCCHHH----ccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 444567888884 555577777777777652 3454 7899999999999999999998642 224456666654
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccc
Q 009415 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (535)
Q Consensus 121 r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L 200 (535)
..+-..-...+.. .++ .......+ ++++.+.. .. ....++..||||||+|.|
T Consensus 78 ~~i~~g~~~dv~e-----l~a----a~~~gid~----iR~i~~~~-~~--------------~p~~~~~kVvIIDE~h~L 129 (472)
T PRK14962 78 RSIDEGTFMDVIE-----LDA----ASNRGIDE----IRKIRDAV-GY--------------RPMEGKYKVYIIDEVHML 129 (472)
T ss_pred HHHhcCCCCccEE-----EeC----cccCCHHH----HHHHHHHH-hh--------------ChhcCCeEEEEEEChHHh
Confidence 4321110000000 000 01112322 33333221 10 011335678999999999
Q ss_pred ccccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHH
Q 009415 201 REWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSF 277 (535)
Q Consensus 201 ~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f 277 (535)
.. +.+..|++.-|..+ .++.+|++++.+ +..+.+|+ ..+.|.+++.+++..+|.......++ .+
T Consensus 130 t~-----~a~~~LLk~LE~p~-~~vv~Ilattn~~kl~~~L~SR~-----~vv~f~~l~~~el~~~L~~i~~~egi--~i 196 (472)
T PRK14962 130 TK-----EAFNALLKTLEEPP-SHVVFVLATTNLEKVPPTIISRC-----QVIEFRNISDELIIKRLQEVAEAEGI--EI 196 (472)
T ss_pred HH-----HHHHHHHHHHHhCC-CcEEEEEEeCChHhhhHHHhcCc-----EEEEECCccHHHHHHHHHHHHHHcCC--CC
Confidence 53 23455555545432 457777776642 22333443 68999999999999999865321111 11
Q ss_pred HHhhhhcccc-ccccHHHHHHHHHHhhh
Q 009415 278 LDIVLRPFCR-ITKRVDELSTAFSLLFK 304 (535)
Q Consensus 278 ~~~vl~~~~~-~~rdl~eL~~~~~~L~~ 304 (535)
-..+++.+.. ...|+..+...+..++.
T Consensus 197 ~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 197 DREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1233333343 33466666666666553
No 21
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.14 E-value=1.6e-10 Score=112.43 Aligned_cols=183 Identities=18% Similarity=0.306 Sum_probs=97.0
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC---CeEEEeccccCCHHHHHHHH---------
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR---PFVYTSCLSCYSPRILFESI--------- 127 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~---~~~yVnc~~~~s~r~l~~~I--------- 127 (535)
|.||++|+++|.+++... +...++|+||.|+|||++++.+++.+.- ..+|+++.+..+... +..+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESS-LRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHH-HHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhH-HHHHHHHHHHHHH
Confidence 689999999999988762 3457999999999999999999998853 456666654432221 2222
Q ss_pred -HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccc-cccC
Q 009415 128 -LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR-EWDK 205 (535)
Q Consensus 128 -l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~-~~d~ 205 (535)
...+....+. .+...... +........+..+++.+-. .+..+||||||+|.+. ..+.
T Consensus 78 l~~~~~~~~~~--~~~~~~~~-~~~~~~~~~l~~~~~~l~~------------------~~~~~iiviDe~~~~~~~~~~ 136 (234)
T PF01637_consen 78 LSEALGISIPS--ITLEKISK-DLSEDSFSALERLLEKLKK------------------KGKKVIIVIDEFQYLAIASEE 136 (234)
T ss_dssp CHHHHHHHCCT--STTEEEEC-TS-GG-G--HHHHHHHHHH------------------CHCCEEEEEETGGGGGBCTTT
T ss_pred HHHHHhhhccc--ccchhhhh-cchhhHHHHHHHHHHHHHh------------------cCCcEEEEEecHHHHhhcccc
Confidence 2222221110 00000000 1111112223333333211 1233999999999998 2222
Q ss_pred CCChHHHHHccccc-cCCCcEEEEEEeCCC--ccccccCCC--CCCCeeEecCCCCHHHHHHHHhh
Q 009415 206 SSSILPFLFGLSDI-LKMPEVGMIFISSTS--PDTYHSNTG--YVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 206 ~~~lL~~L~rL~E~-~~~~~l~vI~Is~~~--~~~f~~~~g--~~~p~~I~FppYt~~el~~IL~~ 266 (535)
...++..|..+-+. ....++++|++++.. ...+....+ ......++.+|++++|..+++..
T Consensus 137 ~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~ 202 (234)
T PF01637_consen 137 DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKE 202 (234)
T ss_dssp THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHH
Confidence 35677777665443 223578888877652 222221111 11114699999999999999986
No 22
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=3.4e-10 Score=118.91 Aligned_cols=212 Identities=11% Similarity=0.134 Sum_probs=120.7
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEE--EeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVY--TSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~y--Vnc~~~~s~r~l~ 124 (535)
-+|..+++ +.|-++-+..|.+.+... ..++ ++++||+|+|||++++.+++.+.....+ -.|..|.+.+.+.
T Consensus 10 yrP~~~~~----iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 10 WRPQYFRD----IIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred hCCCchhh----ccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 35667774 456688888888888652 4555 6899999999999999999998643222 2477777665444
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
....-.+... ++ .....+.+ ++++++.+.. ....++.-|+||||+|.+.+
T Consensus 84 ~~~~~d~~~~-----~~----~~~~~v~~----ir~i~~~~~~---------------~p~~~~~kviIIDEa~~l~~-- 133 (363)
T PRK14961 84 KGLCLDLIEI-----DA----ASRTKVEE----MREILDNIYY---------------SPSKSRFKVYLIDEVHMLSR-- 133 (363)
T ss_pred cCCCCceEEe-----cc----cccCCHHH----HHHHHHHHhc---------------CcccCCceEEEEEChhhcCH--
Confidence 3222111110 00 00112322 3333332211 01123556888999999953
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhc
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRP 284 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~ 284 (535)
..+.+|++.-|..+ +++.+|++++.. +.+.....+ ....+.|+|++.+|+.++|.......+. .+-...++.
T Consensus 134 ---~a~naLLk~lEe~~-~~~~fIl~t~~~-~~l~~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ 205 (363)
T PRK14961 134 ---HSFNALLKTLEEPP-QHIKFILATTDV-EKIPKTILS-RCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKL 205 (363)
T ss_pred ---HHHHHHHHHHhcCC-CCeEEEEEcCCh-HhhhHHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 34556776656543 468888888664 233322111 1168999999999999999864321111 011122222
Q ss_pred ccccc-ccHHHHHHHHHHhh
Q 009415 285 FCRIT-KRVDELSTAFSLLF 303 (535)
Q Consensus 285 ~~~~~-rdl~eL~~~~~~L~ 303 (535)
+...+ .|+......+..++
T Consensus 206 ia~~s~G~~R~al~~l~~~~ 225 (363)
T PRK14961 206 IAYHAHGSMRDALNLLEHAI 225 (363)
T ss_pred HHHHcCCCHHHHHHHHHHHH
Confidence 23322 35666555665554
No 23
>PRK04195 replication factor C large subunit; Provisional
Probab=99.14 E-value=7.3e-10 Score=120.70 Aligned_cols=162 Identities=12% Similarity=0.154 Sum_probs=105.3
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
.|..++ .+.|++..+.+|..++.... .+.++++||||||||||+++++++++++..++.+|+....+... +..
T Consensus 9 rP~~l~----dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~-i~~ 83 (482)
T PRK04195 9 RPKTLS----DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADV-IER 83 (482)
T ss_pred CCCCHH----HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHH-HHH
Confidence 466666 46677999999988886532 23457999999999999999999999999999999866544321 111
Q ss_pred HHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCC
Q 009415 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS 206 (535)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~ 206 (535)
++...... .. .......+|||||+|.|.... .
T Consensus 84 ~i~~~~~~----------------------------~s-------------------l~~~~~kvIiIDEaD~L~~~~-d 115 (482)
T PRK04195 84 VAGEAATS----------------------------GS-------------------LFGARRKLILLDEVDGIHGNE-D 115 (482)
T ss_pred HHHHhhcc----------------------------Cc-------------------ccCCCCeEEEEecCccccccc-c
Confidence 11111000 00 001145688999999995311 1
Q ss_pred CChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 207 SSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 207 ~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
...+..|+++.+. .+..+|+|+|.....-..... .....|.|++++.+++..+|...
T Consensus 116 ~~~~~aL~~~l~~---~~~~iIli~n~~~~~~~k~Lr-sr~~~I~f~~~~~~~i~~~L~~i 172 (482)
T PRK04195 116 RGGARAILELIKK---AKQPIILTANDPYDPSLRELR-NACLMIEFKRLSTRSIVPVLKRI 172 (482)
T ss_pred hhHHHHHHHHHHc---CCCCEEEeccCccccchhhHh-ccceEEEecCCCHHHHHHHHHHH
Confidence 2445667766554 346788899876322110010 11268999999999999999764
No 24
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.2e-09 Score=110.51 Aligned_cols=161 Identities=16% Similarity=0.233 Sum_probs=109.8
Q ss_pred hcCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
+.+-|=++||++|...+.-+ ..++.-+++|||||||||.++++|+++.+..|+.|...+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE---------- 220 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE---------- 220 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH----------
Confidence 46778899999999887542 123445999999999999999999999999999888644
Q ss_pred HHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc--cc
Q 009415 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE--WD 204 (535)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~--~d 204 (535)
+++...|. | . ++...++...+ ...+.||++||+|.+.. .|
T Consensus 221 lVqKYiGE------G---------a--------RlVRelF~lAr---------------ekaPsIIFiDEIDAIg~kR~d 262 (406)
T COG1222 221 LVQKYIGE------G---------A--------RLVRELFELAR---------------EKAPSIIFIDEIDAIGAKRFD 262 (406)
T ss_pred HHHHHhcc------c---------h--------HHHHHHHHHHh---------------hcCCeEEEEechhhhhccccc
Confidence 23333332 1 1 12233334332 23578999999999941 11
Q ss_pred --------CCCChHHHHHccccccCCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 --------KSSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 --------~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
-..+++..|..|--+-+..|++||+.+|.+ .++-+-|.|-+. ..|.||..+.+.=.+||.-+
T Consensus 263 ~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~D-RkIEfplPd~~gR~~Il~IH 334 (406)
T COG1222 263 SGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFD-RKIEFPLPDEEGRAEILKIH 334 (406)
T ss_pred CCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCccc-ceeecCCCCHHHHHHHHHHH
Confidence 113566667666555445689999999985 333333555333 58999999999888888644
No 25
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.12 E-value=1.8e-09 Score=118.28 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=101.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (535)
..++||||++|+|||++++++...+ +..+.|++|.+ +...+...+... ...+|.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee------f~~el~~al~~~---------------~~~~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE------FTNEFINSIRDG---------------KGDSFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHhc---------------cHHHHH
Confidence 3459999999999999999999875 46778888644 233333333210 111221
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-CCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-SSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
.. ....-+||||+++.+...+. ...+|..|..+++. +..+|+.|+..
T Consensus 373 ~~----------------------------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~----gk~IIITSd~~ 420 (617)
T PRK14086 373 RR----------------------------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA----NKQIVLSSDRP 420 (617)
T ss_pred HH----------------------------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc----CCCEEEecCCC
Confidence 11 11345889999999953211 13455555455543 34577777765
Q ss_pred cc-------ccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhcc-ccccccHHHHHHHHHHhh
Q 009415 235 PD-------TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPF-CRITKRVDELSTAFSLLF 303 (535)
Q Consensus 235 ~~-------~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~-~~~~rdl~eL~~~~~~L~ 303 (535)
|. ++.+|..+. ..+.+.+++.+...+||........+- .=..++.-+ .+..+++.+|..++..|.
T Consensus 421 P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~aIL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~LegaL~rL~ 493 (617)
T PRK14086 421 PKQLVTLEDRLRNRFEWG--LITDVQPPELETRIAILRKKAVQEQLN--APPEVLEFIASRISRNIRELEGALIRVT 493 (617)
T ss_pred hHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 33 344555443 689999999999999998764322110 001222222 356779999999998873
No 26
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.11 E-value=9.2e-11 Score=110.39 Aligned_cols=75 Identities=27% Similarity=0.411 Sum_probs=46.7
Q ss_pred cCCChHHHHHHHHHHHhccC-CCCCCeEEECCCCCCHHHHHHHHHHhcCCC---eEEEeccccC-----CHHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLN-SSMPPLFVYGSASTGKTSIIIQVFRHLSRP---FVYTSCLSCY-----SPRILFESILN 129 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~-~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~---~~yVnc~~~~-----s~r~l~~~Il~ 129 (535)
+|+||++|+++|..++.... ..+++++|+|++|+|||++++.+++.+... +++++|.... +.+.+++.++.
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSERNPYSPFRSALRQLID 80 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTTS-HHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccccchhhHHHHHHHHHHH
Confidence 48999999999999996322 345679999999999999999999887533 7888887762 12455555555
Q ss_pred HHhh
Q 009415 130 QLLL 133 (535)
Q Consensus 130 ~L~~ 133 (535)
++..
T Consensus 81 ~~~~ 84 (185)
T PF13191_consen 81 QLLD 84 (185)
T ss_dssp ----
T ss_pred Hhhc
Confidence 5443
No 27
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.11 E-value=1.5e-09 Score=111.43 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=99.4
Q ss_pred CCCcccc--CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEe
Q 009415 41 LGDLVFG--QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTS 113 (535)
Q Consensus 41 ~~~~~f~--~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~-----~~~~yVn 113 (535)
+++..|- -+|..++ .+.|+++.+..|..++.. ...|+++|||++|||||++++.+++.+. ..++.+|
T Consensus 2 ~~~~~w~~kyrP~~~~----~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 2 MMEEIWVEKYRPRTLD----EIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred CccCccchhhCCCcHH----HhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3444443 3566666 456889999999998865 2346799999999999999999999873 2233333
Q ss_pred ccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEE
Q 009415 114 CLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLI 193 (535)
Q Consensus 114 c~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlV 193 (535)
+........ +++.+..+.... +......-+|+
T Consensus 76 ~~~~~~~~~-----------------------------------~~~~i~~~~~~~-------------~~~~~~~~vvi 107 (319)
T PRK00440 76 ASDERGIDV-----------------------------------IRNKIKEFARTA-------------PVGGAPFKIIF 107 (319)
T ss_pred cccccchHH-----------------------------------HHHHHHHHHhcC-------------CCCCCCceEEE
Confidence 322211110 111111111100 00112356888
Q ss_pred EeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 194 FDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 194 LDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
|||+|.+.. +....|.++.+... ++..+|++++... +.+.++. ..+.|++++.+|+.++|....
T Consensus 108 iDe~~~l~~-----~~~~~L~~~le~~~-~~~~lIl~~~~~~~l~~~l~sr~-----~~~~~~~l~~~ei~~~l~~~~ 174 (319)
T PRK00440 108 LDEADNLTS-----DAQQALRRTMEMYS-QNTRFILSCNYSSKIIDPIQSRC-----AVFRFSPLKKEAVAERLRYIA 174 (319)
T ss_pred EeCcccCCH-----HHHHHHHHHHhcCC-CCCeEEEEeCCccccchhHHHHh-----heeeeCCCCHHHHHHHHHHHH
Confidence 999999953 23455555555433 4577888876542 2222332 479999999999999998643
No 28
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.09 E-value=1.1e-09 Score=106.89 Aligned_cols=166 Identities=19% Similarity=0.333 Sum_probs=96.3
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (535)
...++||||++|+|||++++++++++ +.+++|+++.+ +...+...+... .+.+|
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~------f~~~~~~~~~~~---------------~~~~~ 91 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE------FIREFADALRDG---------------EIEEF 91 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH------HHHHHHHHHHTT---------------SHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH------HHHHHHHHHHcc---------------cchhh
Confidence 34569999999999999999998764 46788888643 445555555321 23332
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCC-CChHHHHHccccccCCCcEEEEEEeCC
Q 009415 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS-SSILPFLFGLSDILKMPEVGMIFISST 233 (535)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~-~~lL~~L~rL~E~~~~~~l~vI~Is~~ 233 (535)
.+.+ ...-+|+||++|.+...... ..++..+-++.+. +-.+|+.|+.
T Consensus 92 ~~~~----------------------------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~----~k~li~ts~~ 139 (219)
T PF00308_consen 92 KDRL----------------------------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES----GKQLILTSDR 139 (219)
T ss_dssp HHHH----------------------------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT----TSEEEEEESS
T ss_pred hhhh----------------------------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh----CCeEEEEeCC
Confidence 2211 12458889999999642111 2333333333333 4477888877
Q ss_pred Ccccc-------ccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccc-cccccHHHHHHHHHHh
Q 009415 234 SPDTY-------HSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC-RITKRVDELSTAFSLL 302 (535)
Q Consensus 234 ~~~~f-------~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~-~~~rdl~eL~~~~~~L 302 (535)
+|..+ .+|.++. ..+...+++.++..+||.......++ .+=..+++-+. +..+|+.+|..++..|
T Consensus 140 ~P~~l~~~~~~L~SRl~~G--l~~~l~~pd~~~r~~il~~~a~~~~~--~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 140 PPSELSGLLPDLRSRLSWG--LVVELQPPDDEDRRRILQKKAKERGI--ELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp -TTTTTTS-HHHHHHHHCS--EEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CCccccccChhhhhhHhhc--chhhcCCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 65543 3444433 68889999999999999865421111 01122222222 3567899999888877
No 29
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.09 E-value=1.4e-09 Score=117.48 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=102.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (535)
...+++|||++|||||++++++.+++ +..++|++|.+. ...+...+... ...+|
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~------~~~~~~~~~~~---------------~~~~~ 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF------TNDFVNALRNN---------------TMEEF 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH------HHHHHHHHHcC---------------cHHHH
Confidence 34579999999999999999999886 456888887543 23333333210 12222
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-CCChHHHHHccccccCCCcEEEEEEeCC
Q 009415 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-SSSILPFLFGLSDILKMPEVGMIFISST 233 (535)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~~~~~~l~vI~Is~~ 233 (535)
... + ...-+|||||+|.+...+. ..++++.|-.+.+. +..+|+.++.
T Consensus 206 ~~~----~------------------------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~----~~~iiits~~ 253 (450)
T PRK00149 206 KEK----Y------------------------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA----GKQIVLTSDR 253 (450)
T ss_pred HHH----H------------------------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC----CCcEEEECCC
Confidence 211 1 1245899999999853111 13455555556554 2346666666
Q ss_pred Cccc-------cccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccc-cccccHHHHHHHHHHhh
Q 009415 234 SPDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC-RITKRVDELSTAFSLLF 303 (535)
Q Consensus 234 ~~~~-------f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~-~~~rdl~eL~~~~~~L~ 303 (535)
+|.. +.+|.... ..+.|.+|+.++..+||.......++ .+=+.+++.+. +..+|+.+|..++..|.
T Consensus 254 ~p~~l~~l~~~l~SRl~~g--l~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R~l~~~l~~l~ 327 (450)
T PRK00149 254 PPKELPGLEERLRSRFEWG--LTVDIEPPDLETRIAILKKKAEEEGI--DLPDEVLEFIAKNITSNVRELEGALNRLI 327 (450)
T ss_pred CHHHHHHHHHHHHhHhcCC--eeEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHcCcCCCHHHHHHHHHHHH
Confidence 5433 34555432 58999999999999999876432111 11123344333 35668888888888773
No 30
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.09 E-value=3.3e-10 Score=100.45 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=68.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHH
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALI 163 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~ 163 (535)
|+|+||||||||++++.+++.++.++++++|.+..+. ...+....+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~-----------------------------~~~~~~~~i~~~~~ 51 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISS-----------------------------YAGDSEQKIRDFFK 51 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTS-----------------------------STTHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccc-----------------------------cccccccccccccc
Confidence 6899999999999999999999999999999765421 11122223333443
Q ss_pred HHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc------CCCChHHHHHccccccCC--CcEEEEEEeCCC
Q 009415 164 NVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD------KSSSILPFLFGLSDILKM--PEVGMIFISSTS 234 (535)
Q Consensus 164 ~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d------~~~~lL~~L~rL~E~~~~--~~l~vI~Is~~~ 234 (535)
.... ...+.||+|||+|.+.... ....++..|+..-+.... .++.+|+.++..
T Consensus 52 ~~~~------------------~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 52 KAKK------------------SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp HHHH------------------TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred cccc------------------cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 3111 1136899999999996421 012445556554443321 358999999884
No 31
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.08 E-value=2.8e-09 Score=113.71 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=100.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (535)
..+++|||++|||||++++++.+++ +..++|++|.+ +...+...+... ...+|.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~------~~~~~~~~~~~~---------------~~~~~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK------FTNDFVNALRNN---------------KMEEFK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH------HHHHHHHHHHcC---------------CHHHHH
Confidence 4569999999999999999999876 46788988643 233344444210 222222
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-CCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-SSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
.. +. ..-+|+|||+|.+...+. ...+++.|-++.+. +..+|+.++..
T Consensus 195 ~~----~~------------------------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~----~~~iiits~~~ 242 (405)
T TIGR00362 195 EK----YR------------------------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN----GKQIVLTSDRP 242 (405)
T ss_pred HH----HH------------------------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC----CCCEEEecCCC
Confidence 21 11 234888999999853211 12355555555553 33466666654
Q ss_pred cc-------ccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccc-cccccHHHHHHHHHHhh
Q 009415 235 PD-------TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC-RITKRVDELSTAFSLLF 303 (535)
Q Consensus 235 ~~-------~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~-~~~rdl~eL~~~~~~L~ 303 (535)
|. ++.+|.... ..+.|++|+.++..+||........+ ..=..+++.+. +..+|+.+|..++..|.
T Consensus 243 p~~l~~l~~~l~SRl~~g--~~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~~~l~~l~ 315 (405)
T TIGR00362 243 PKELPGLEERLRSRFEWG--LVVDIEPPDLETRLAILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELEGALNRLL 315 (405)
T ss_pred HHHHhhhhhhhhhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 33 234455332 58999999999999999876432111 01122333333 35668888888888774
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.07 E-value=1.6e-09 Score=115.65 Aligned_cols=161 Identities=20% Similarity=0.226 Sum_probs=99.7
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|.+.|+.+|...+.-. ..++..+++|||||||||++++++...++..++.|++.+..+
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~-------- 255 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ-------- 255 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh--------
Confidence 4588999999998887531 123345999999999999999999999998888887543211
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--- 204 (535)
...+. .. ..++.++.. .+ .+.+.||+|||+|.+....
T Consensus 256 --k~~Ge---------------~~----~~vr~lF~~----A~---------------~~~P~ILfIDEID~l~~kR~~~ 295 (438)
T PTZ00361 256 --KYLGD---------------GP----KLVRELFRV----AE---------------ENAPSIVFIDEIDAIGTKRYDA 295 (438)
T ss_pred --hhcch---------------HH----HHHHHHHHH----HH---------------hCCCcEEeHHHHHHHhccCCCC
Confidence 11110 00 112222221 10 2356799999999985210
Q ss_pred --CC-----CChHHHHHccccccCCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 205 --KS-----SSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 205 --~~-----~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
++ ..++..|..+.......++.||+++|.+ .+.-+.+.|.+ ...|+|++|+.++..+||....
T Consensus 296 ~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRf-d~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 296 TSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRI-DRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCee-EEEEEeCCCCHHHHHHHHHHHH
Confidence 00 1234444444333223468888888864 11212233322 2589999999999999998553
No 33
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=7.2e-10 Score=124.96 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=109.0
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCe-EEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPL-FVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l-~I~G~~GTGKTs~v~~vl~~l~~~~~--yVnc~~~~s~r~l 123 (535)
+-+|..++++. |-+.-+..|.+.+.. +..++. +++||+|||||++++.+++.+..... -..|..|.+...+
T Consensus 9 KyRP~tFddII----GQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 9 KWRPATFEQMV----GQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred HhCCCCHHHhc----CcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 45677777544 668888888888865 356775 79999999999999999999875311 1235555433221
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-......+.. .++. .-..+.+ ++++++.+... ...++..|+||||+|+|.
T Consensus 83 ~~g~~~DviE-----idAa----s~~kVDd----IReLie~v~~~---------------P~~gk~KViIIDEAh~LT-- 132 (944)
T PRK14949 83 AQGRFVDLIE-----VDAA----SRTKVDD----TRELLDNVQYR---------------PSRGRFKVYLIDEVHMLS-- 132 (944)
T ss_pred hcCCCceEEE-----eccc----cccCHHH----HHHHHHHHHhh---------------hhcCCcEEEEEechHhcC--
Confidence 1100000000 0110 0012322 33344332111 013456788899999995
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
...+.+|++.-|-.+ .++.+|++++.. +..+++|+ ..+.|.+++.+++.+.|...
T Consensus 133 ---~eAqNALLKtLEEPP-~~vrFILaTTe~~kLl~TIlSRC-----q~f~fkpLs~eEI~~~L~~i 190 (944)
T PRK14949 133 ---RSSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTVLSRC-----LQFNLKSLTQDEIGTQLNHI 190 (944)
T ss_pred ---HHHHHHHHHHHhccC-CCeEEEEECCCchhchHHHHHhh-----eEEeCCCCCHHHHHHHHHHH
Confidence 456788888877754 468888886654 22334444 79999999999999998763
No 34
>PRK08727 hypothetical protein; Validated
Probab=99.06 E-value=2.5e-09 Score=105.52 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=94.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFV 158 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L 158 (535)
..++|||++|||||+++++++..+ +.+.+|+++.+. ...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~-------------------------------------~~~~ 84 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA-------------------------------------AGRL 84 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh-------------------------------------hhhH
Confidence 459999999999999999997654 467778874220 0011
Q ss_pred HHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCcccc
Q 009415 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY 238 (535)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f 238 (535)
.+.++.+ ...-+|||||+|.+.... .--..|+++.+.....+..+|++++.+|..+
T Consensus 85 ~~~~~~l---------------------~~~dlLiIDDi~~l~~~~---~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 85 RDALEAL---------------------EGRSLVALDGLESIAGQR---EDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HHHHHHH---------------------hcCCEEEEeCcccccCCh---HHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 1222221 123488999999986422 1122333433221112467999998875543
Q ss_pred -------ccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhcccc-ccccHHHHHHHHHHhhh
Q 009415 239 -------HSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCR-ITKRVDELSTAFSLLFK 304 (535)
Q Consensus 239 -------~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~~-~~rdl~eL~~~~~~L~~ 304 (535)
.+|..+. ..+.|++|+.+++.+||.++.....+ ..=..+++.+.. ..||+..+..+++.+..
T Consensus 141 ~~~~~dL~SRl~~~--~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~l~~L~~l~~ 210 (233)
T PRK08727 141 ALVLPDLRSRLAQC--IRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGLVALLDRLDR 210 (233)
T ss_pred hhhhHHHHHHHhcC--ceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3454332 68999999999999999964321111 000122222223 44688888877777653
No 35
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.06 E-value=1.6e-09 Score=115.82 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=107.2
Q ss_pred ccCCCCCHHHHhhcCCChHHHHHH---HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHH
Q 009415 46 FGQEPISLDDLLSRFPGRRVQILE---LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRI 122 (535)
Q Consensus 46 f~~~~~~~~~l~~~~p~Re~qi~~---L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~ 122 (535)
.+.+|..++ .+.|+++.+.. |...+.. ...++++|+||||||||++++.+.+.++..++.++|....
T Consensus 4 ~~~RP~~l~----d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---- 73 (413)
T PRK13342 4 ERMRPKTLD----EVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---- 73 (413)
T ss_pred hhhCCCCHH----HhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc----
Confidence 455777777 45566776655 6666654 2456799999999999999999999999999888874321
Q ss_pred HHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
..+ +++.++...... ..++..||+|||+|++..
T Consensus 74 ----------------------------~~~----ir~ii~~~~~~~---------------~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 74 ----------------------------VKD----LREVIEEARQRR---------------SAGRRTILFIDEIHRFNK 106 (413)
T ss_pred ----------------------------HHH----HHHHHHHHHHhh---------------hcCCceEEEEechhhhCH
Confidence 011 112222211100 123567899999999853
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCCc-----cccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCCh--hhhh
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTSP-----DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQ--KLYS 275 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~-----~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~--~l~~ 275 (535)
. ....|+...|. ..+.+|..++..+ +.+.+|+ ..+.|++++.+++.++|....... ++ -
T Consensus 107 ~-----~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~-----~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i 172 (413)
T PRK13342 107 A-----QQDALLPHVED---GTITLIGATTENPSFEVNPALLSRA-----QVFELKPLSEEDIEQLLKRALEDKERGL-V 172 (413)
T ss_pred H-----HHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccc-----eeeEeCCCCHHHHHHHHHHHHHHhhcCC-C
Confidence 1 22333333332 2333333332221 1233333 589999999999999998632110 11 0
Q ss_pred HHHHhhhhcccccc-ccHHHHHHHHHHhh
Q 009415 276 SFLDIVLRPFCRIT-KRVDELSTAFSLLF 303 (535)
Q Consensus 276 ~f~~~vl~~~~~~~-rdl~eL~~~~~~L~ 303 (535)
.+-..++..+.+.+ .|+..+..+++..+
T Consensus 173 ~i~~~al~~l~~~s~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 173 ELDDEALDALARLANGDARRALNLLELAA 201 (413)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11122333333333 36666666665543
No 36
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.06 E-value=3.2e-09 Score=106.47 Aligned_cols=191 Identities=12% Similarity=0.127 Sum_probs=103.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC-CeEEEec-cccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSC-LSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFV 158 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~-~~~yVnc-~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L 158 (535)
.+.++|+|++|+|||++++.+++.+.. .+..+.+ ....+...++..|+..++... ......+....+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~-----------~~~~~~~~~~~l 111 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLET-----------EGRDKAALLREL 111 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCC-----------CCCCHHHHHHHH
Confidence 446889999999999999999998862 2222111 122466777878877763210 111122222223
Q ss_pred HHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcccccc--CCCcEEEEEEeCCCcc
Q 009415 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDIL--KMPEVGMIFISSTSPD 236 (535)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~--~~~~l~vI~Is~~~~~ 236 (535)
...+.... ..+++.+|||||+|.+.. ..+..|..+.+.. ....+.||+++.....
T Consensus 112 ~~~l~~~~------------------~~~~~~vliiDe~~~l~~-----~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~ 168 (269)
T TIGR03015 112 EDFLIEQF------------------AAGKRALLVVDEAQNLTP-----ELLEELRMLSNFQTDNAKLLQIFLVGQPEFR 168 (269)
T ss_pred HHHHHHHH------------------hCCCCeEEEEECcccCCH-----HHHHHHHHHhCcccCCCCeEEEEEcCCHHHH
Confidence 32222111 134568999999999853 2344443333321 1223556666654221
Q ss_pred cccc-----CCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhh--hHHHHhhhhccccccc-cHHHHHHHHHHhhhh
Q 009415 237 TYHS-----NTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLY--SSFLDIVLRPFCRITK-RVDELSTAFSLLFKR 305 (535)
Q Consensus 237 ~f~~-----~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~--~~f~~~vl~~~~~~~r-dl~eL~~~~~~L~~~ 305 (535)
+.+. ....+....+++++++.+|+.+++..+....+.. ..|-...++.+++.+. +...+..+|..+|..
T Consensus 169 ~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 169 ETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLS 245 (269)
T ss_pred HHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 1111 0111122578999999999999997543211110 1233344455555444 555666777776665
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.06 E-value=8.8e-10 Score=115.89 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=96.8
Q ss_pred hcCCChHHHHHHHHHHHhccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
+.+.|++.|+.+|...+.... .++..++||||||||||++++++++.++..++.+.+.+. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l------~-- 193 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL------V-- 193 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH------H--
Confidence 478999999999998874321 123459999999999999999999999988777654321 1
Q ss_pred HHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-
Q 009415 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK- 205 (535)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~- 205 (535)
....+ +....++..+. ..+ ...+.||+|||+|.+.....
T Consensus 194 --~~~~g-------------------~~~~~i~~~f~----~a~---------------~~~p~il~iDEiD~l~~~~~~ 233 (364)
T TIGR01242 194 --RKYIG-------------------EGARLVREIFE----LAK---------------EKAPSIIFIDEIDAIAAKRTD 233 (364)
T ss_pred --HHhhh-------------------HHHHHHHHHHH----HHH---------------hcCCcEEEhhhhhhhcccccc
Confidence 11100 00111222222 111 22467999999999842100
Q ss_pred -----CCC---hHHHHH-ccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 -----SSS---ILPFLF-GLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 -----~~~---lL~~L~-rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
... .+..++ .+.......++.||+++|.+ ++.++ +.|-+. ..|+|+.|+.++-.+|+...
T Consensus 234 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~-r~grfd-~~i~v~~P~~~~r~~Il~~~ 305 (364)
T TIGR01242 234 SGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALL-RPGRFD-RIIEVPLPDFEGRLEILKIH 305 (364)
T ss_pred CCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhc-CcccCc-eEEEeCCcCHHHHHHHHHHH
Confidence 011 222222 22222223478888888865 22232 223222 47999999999999999754
No 38
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.06 E-value=2e-09 Score=107.98 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=46.2
Q ss_pred EEEEEeCCccccccc---CCCChHHHHHccccccCCCcEEEEEEeCCC-cccccc---CCCCCCCeeEecCCCCHHHHHH
Q 009415 190 IYLIFDNFELVREWD---KSSSILPFLFGLSDILKMPEVGMIFISSTS-PDTYHS---NTGYVAPIHVYFPECTEDDLRQ 262 (535)
Q Consensus 190 ~vlVLDe~d~L~~~d---~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~-~~~f~~---~~g~~~p~~I~FppYt~~el~~ 262 (535)
-||+|||+|.|..-. .+.+.+..|++..|-.. .++.+|+++... .+.++. ....+-+..|+||+|+.+|+.+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccC-CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 388999999986310 01345667776655432 346666655432 112211 1112224689999999999999
Q ss_pred HHhhc
Q 009415 263 IFMRN 267 (535)
Q Consensus 263 IL~~~ 267 (535)
|+...
T Consensus 186 Il~~~ 190 (261)
T TIGR02881 186 IAERM 190 (261)
T ss_pred HHHHH
Confidence 99853
No 39
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=5.8e-10 Score=123.32 Aligned_cols=176 Identities=17% Similarity=0.185 Sum_probs=109.8
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l 123 (535)
+-+|..++ .+.|.+..++.|.+.+... ..++ ++++||+|+|||++++.+.+.+.... ....|..|.+.+.+
T Consensus 9 KYRP~tFd----dIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 9 KWRPKTFA----DLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred HhCCCCHH----HHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 34677777 5566689999999988762 4455 78999999999999999999987532 22357666655433
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-..-.-.+... ++ ..... ++.++++++..... ...++.-||||||+|.|..
T Consensus 83 ~~g~~~DvlEi-----da----As~~g----Vd~IRelle~a~~~---------------P~~gk~KVIIIDEad~Ls~- 133 (709)
T PRK08691 83 DAGRYVDLLEI-----DA----ASNTG----IDNIREVLENAQYA---------------PTAGKYKVYIIDEVHMLSK- 133 (709)
T ss_pred hccCccceEEE-----ec----cccCC----HHHHHHHHHHHHhh---------------hhhCCcEEEEEECccccCH-
Confidence 22111011000 00 00111 22344444432110 0123556888999998852
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
..+..|++.-|..+ .++++||+++.. +..+++|+ ..+.|.+++.+++.++|...
T Consensus 134 ----~A~NALLKtLEEPp-~~v~fILaTtd~~kL~~TIrSRC-----~~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 134 ----SAFNAMLKTLEEPP-EHVKFILATTDPHKVPVTVLSRC-----LQFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred ----HHHHHHHHHHHhCC-CCcEEEEEeCCccccchHHHHHH-----hhhhcCCCCHHHHHHHHHHH
Confidence 44667777766543 478899998774 22334444 68899999999999988754
No 40
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.05 E-value=3.2e-09 Score=104.91 Aligned_cols=156 Identities=12% Similarity=0.193 Sum_probs=98.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (535)
.++++||||+|||||++++++.+.+ +..+.|+++....+ ...+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~------------------------------~~~~---- 90 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW------------------------------FVPE---- 90 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh------------------------------hhHH----
Confidence 4679999999999999999998765 35577777632100 0011
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc---ccCCCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE---WDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~---~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
.++.+ . ..-+|+|||++.+.. |+ ..++..|.++.|. .+..+|+.|+.+
T Consensus 91 ---~~~~~-~--------------------~~dlliiDdi~~~~~~~~~~--~~lf~l~n~~~e~---g~~~li~ts~~~ 141 (235)
T PRK08084 91 ---VLEGM-E--------------------QLSLVCIDNIECIAGDELWE--MAIFDLYNRILES---GRTRLLITGDRP 141 (235)
T ss_pred ---HHHHh-h--------------------hCCEEEEeChhhhcCCHHHH--HHHHHHHHHHHHc---CCCeEEEeCCCC
Confidence 11111 1 124788999999842 22 3456666666663 235788877765
Q ss_pred cc-------ccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccc-cccccHHHHHHHHHHhh
Q 009415 235 PD-------TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC-RITKRVDELSTAFSLLF 303 (535)
Q Consensus 235 ~~-------~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~-~~~rdl~eL~~~~~~L~ 303 (535)
|. ++.+|.++. ..+.+.+.+.+++.+||.+.....++ ..=..+++-+. +..+|+..|..++..|.
T Consensus 142 p~~l~~~~~~L~SRl~~g--~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWG--QIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred hHHcCcccHHHHHHHhCC--ceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 33 334555443 68999999999999999764322111 01133333333 46679999998888874
No 41
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.05 E-value=2.8e-09 Score=115.36 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=96.9
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCC--------eEEEeccccCC
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRP--------FVYTSCLSCYS 119 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~--------~~yVnc~~~~s 119 (535)
.+.|.+.|+.+|...+.-. ..++..+++|||||||||++++++++.++.+ ..+++|...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 5668899999988876321 1234469999999999999999999998643 344454321
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcc
Q 009415 120 PRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFEL 199 (535)
Q Consensus 120 ~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~ 199 (535)
.+++...+ +....++.+++.. +... ..+.++||+|||+|.
T Consensus 261 ------eLl~kyvG-------------------ete~~ir~iF~~A----r~~a-----------~~g~p~IIfIDEiD~ 300 (512)
T TIGR03689 261 ------ELLNKYVG-------------------ETERQIRLIFQRA----REKA-----------SDGRPVIVFFDEMDS 300 (512)
T ss_pred ------hhcccccc-------------------hHHHHHHHHHHHH----HHHh-----------hcCCCceEEEehhhh
Confidence 01111100 1111222233221 1110 134678999999999
Q ss_pred cccccC---C----CChHHHHHcccc-ccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 200 VREWDK---S----SSILPFLFGLSD-ILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 200 L~~~d~---~----~~lL~~L~rL~E-~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+..... . ..++..|+..-+ .....++.||..+|.+ .+.++ |.|-+ ...|+|++++.++..+|+...
T Consensus 301 L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALl-RpGRf-D~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 301 IFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAIL-RPGRL-DVKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred hhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhc-Ccccc-ceEEEeCCCCHHHHHHHHHHH
Confidence 953111 0 134556655432 2222467777777764 11222 33322 258999999999999999854
No 42
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=5.8e-10 Score=122.07 Aligned_cols=175 Identities=11% Similarity=0.153 Sum_probs=109.8
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe-------EEEeccccC
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF-------VYTSCLSCY 118 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~-------~yVnc~~~~ 118 (535)
+-+|.++++|. |-++-++.|.+.+... ..++ ++++|++|||||++++.+.+.+...- ..-.|..|.
T Consensus 9 KYRPqtFddVI----GQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 9 KWRPRDFTTLV----GQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred HhCCCcHHHHc----CcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 34677777555 4488888888888763 4566 68999999999999999999986421 111366665
Q ss_pred CHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCc
Q 009415 119 SPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFE 198 (535)
Q Consensus 119 s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d 198 (535)
+.+.+-..-.-.+.. -++ ..-..+ +.++++++.+... ...++.-|+||||+|
T Consensus 83 sC~~I~aG~hpDviE-----IdA----as~~gV----DdIReLie~~~~~---------------P~~gr~KViIIDEah 134 (700)
T PRK12323 83 ACTEIDAGRFVDYIE-----MDA----ASNRGV----DEMAQLLDKAVYA---------------PTAGRFKVYMIDEVH 134 (700)
T ss_pred HHHHHHcCCCCcceE-----ecc----cccCCH----HHHHHHHHHHHhc---------------hhcCCceEEEEEChH
Confidence 443322100000000 000 001122 2344444432211 113456688899999
Q ss_pred ccccccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 199 LVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 199 ~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+|.. .-+..|++.-|..+ .++.+||+++.+ +..+++|+ ..+.|.+++.+++.+.|..
T Consensus 135 ~Ls~-----~AaNALLKTLEEPP-~~v~FILaTtep~kLlpTIrSRC-----q~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 135 MLTN-----HAFNAMLKTLEEPP-EHVKFILATTDPQKIPVTVLSRC-----LQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred hcCH-----HHHHHHHHhhccCC-CCceEEEEeCChHhhhhHHHHHH-----HhcccCCCChHHHHHHHHH
Confidence 9953 45678888777643 578999999874 34455565 6899999999999998874
No 43
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=8.2e-10 Score=120.43 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=108.9
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l 123 (535)
+-+|..++++. |-+.-+..|.+.+... ..++ ++++||+|||||++++.+++.+... ...-.|.+|.+.+.+
T Consensus 9 kyRP~~f~div----Gq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 9 KWRPRCFQEVI----GQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred HHCCCCHHHhc----CCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 34677777554 5588888898888652 4566 6799999999999999999998642 122357777654432
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-..-.-.+.. -++ ..-..+. .++++++.+... + ..++.-|+||||+|.|..
T Consensus 83 ~~g~~~d~~e-----ida----as~~~v~----~iR~l~~~~~~~--------------p-~~~~~kV~iIDE~~~ls~- 133 (509)
T PRK14958 83 DEGRFPDLFE-----VDA----ASRTKVE----DTRELLDNIPYA--------------P-TKGRFKVYLIDEVHMLSG- 133 (509)
T ss_pred hcCCCceEEE-----Ecc----cccCCHH----HHHHHHHHHhhc--------------c-ccCCcEEEEEEChHhcCH-
Confidence 2100000000 000 0111232 244444432110 1 134556888999999953
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+-+.+|++.-|..+ +++++||+++++ +..+.+|+ ..+.|.+++.+++.+.|...
T Consensus 134 ----~a~naLLk~LEepp-~~~~fIlattd~~kl~~tI~SRc-----~~~~f~~l~~~~i~~~l~~i 190 (509)
T PRK14958 134 ----HSFNALLKTLEEPP-SHVKFILATTDHHKLPVTVLSRC-----LQFHLAQLPPLQIAAHCQHL 190 (509)
T ss_pred ----HHHHHHHHHHhccC-CCeEEEEEECChHhchHHHHHHh-----hhhhcCCCCHHHHHHHHHHH
Confidence 45678888767654 578899988764 33344554 68899999999998876543
No 44
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1e-09 Score=120.40 Aligned_cols=177 Identities=17% Similarity=0.182 Sum_probs=109.9
Q ss_pred ccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHH
Q 009415 46 FGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRI 122 (535)
Q Consensus 46 f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~ 122 (535)
.+-+|..++ .+.|.+...+.|.+.+... ..++ ++++||+|+|||++++.+++.++... .-..|..|.+.+.
T Consensus 7 rKyRPktFd----dVIGQe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~ 80 (702)
T PRK14960 7 RKYRPRNFN----ELVGQNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80 (702)
T ss_pred HHhCCCCHH----HhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHH
Confidence 345677777 5566788899999988753 3444 68999999999999999999987532 1224666655442
Q ss_pred HHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
+-..-.-.+.. .++. .-..+ +.++++++..-.. . ..++.-|+||||+|+|..
T Consensus 81 I~~g~hpDviE-----IDAA----s~~~V----ddIReli~~~~y~--------------P-~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 81 VNEGRFIDLIE-----IDAA----SRTKV----EDTRELLDNVPYA--------------P-TQGRFKVYLIDEVHMLST 132 (702)
T ss_pred HhcCCCCceEE-----eccc----ccCCH----HHHHHHHHHHhhh--------------h-hcCCcEEEEEechHhcCH
Confidence 22100000000 0110 00122 2344444432110 0 123456888999999953
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
..+.+|++.-|..+ .++.+|++++.+ +..+++|+ ..+.|.+++.+++.+.|...
T Consensus 133 -----~A~NALLKtLEEPP-~~v~FILaTtd~~kIp~TIlSRC-----q~feFkpLs~eEI~k~L~~I 189 (702)
T PRK14960 133 -----HSFNALLKTLEEPP-EHVKFLFATTDPQKLPITVISRC-----LQFTLRPLAVDEITKHLGAI 189 (702)
T ss_pred -----HHHHHHHHHHhcCC-CCcEEEEEECChHhhhHHHHHhh-----heeeccCCCHHHHHHHHHHH
Confidence 35667777766643 468899988774 33344444 68999999999999988753
No 45
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=8.6e-10 Score=122.26 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=110.5
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~--yVnc~~~~s~r~l 123 (535)
+-+|..++++ .|-+.-+..|.+.+... ..++ ++++|++|+|||++++.+++.+..... .-.|..|.+.+.+
T Consensus 9 KyRP~~f~di----vGQe~vv~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 9 KWRPQTFAEV----VGQEHVLTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred HhCCCCHHHh----cCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 3467777754 45688888898888763 4566 579999999999999999999875322 2257777544332
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-+.-.-.+.. .++. .-..+. .++++++.+... ...++.-|+||||+|+|.
T Consensus 83 ~~g~~~D~ie-----idaa----s~~~Vd----diR~li~~~~~~---------------p~~g~~KV~IIDEah~Ls-- 132 (647)
T PRK07994 83 EQGRFVDLIE-----IDAA----SRTKVE----DTRELLDNVQYA---------------PARGRFKVYLIDEVHMLS-- 132 (647)
T ss_pred HcCCCCCcee-----eccc----ccCCHH----HHHHHHHHHHhh---------------hhcCCCEEEEEechHhCC--
Confidence 2100000000 0110 001232 334444432111 113456788899999995
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
..-+.+|++.-|-.+ .++.+|++++.+ +..+++|+ ..++|.+++.+++.+.|..
T Consensus 133 ---~~a~NALLKtLEEPp-~~v~FIL~Tt~~~kLl~TI~SRC-----~~~~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 133 ---RHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRC-----LQFHLKALDVEQIRQQLEH 189 (647)
T ss_pred ---HHHHHHHHHHHHcCC-CCeEEEEecCCccccchHHHhhh-----eEeeCCCCCHHHHHHHHHH
Confidence 345788888877754 578889887764 23344444 7999999999999988874
No 46
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=2.1e-09 Score=116.71 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=107.0
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe------EEEeccccCCH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF------VYTSCLSCYSP 120 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~------~yVnc~~~~s~ 120 (535)
+-+|..++++. |-+.-+..|.+.+... ..+..++++||+|||||++++.+++.++... .+..|..|.+.
T Consensus 14 kyRP~~f~dli----Gq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 14 KYRPSNFAELQ----GQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred hhCCCCHHHhc----CcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 34677888665 4477788887766552 1234588999999999999999999987532 23456666554
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccc
Q 009415 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (535)
Q Consensus 121 r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L 200 (535)
+.+.....-.+.. -++ ..-... +.++.+++..... ...++..|+||||+|.|
T Consensus 89 ~~i~~~~h~Dv~e-----ida----as~~~v----d~Ir~iie~a~~~---------------P~~~~~KVvIIDEa~~L 140 (507)
T PRK06645 89 ISFNNHNHPDIIE-----IDA----ASKTSV----DDIRRIIESAEYK---------------PLQGKHKIFIIDEVHML 140 (507)
T ss_pred HHHhcCCCCcEEE-----eec----cCCCCH----HHHHHHHHHHHhc---------------cccCCcEEEEEEChhhc
Confidence 4332110000000 000 001122 2344444432110 11335668889999999
Q ss_pred ccccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 201 REWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 201 ~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.. .-+..|++.-|..+ +++.+||+++.. +..+.+|+ ..+.|.+++.+|+.++|....
T Consensus 141 s~-----~a~naLLk~LEepp-~~~vfI~aTte~~kI~~tI~SRc-----~~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 141 SK-----GAFNALLKTLEEPP-PHIIFIFATTEVQKIPATIISRC-----QRYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred CH-----HHHHHHHHHHhhcC-CCEEEEEEeCChHHhhHHHHhcc-----eEEEccCCCHHHHHHHHHHHH
Confidence 53 34666766656533 567778877553 22233333 689999999999999997554
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=2e-09 Score=119.09 Aligned_cols=176 Identities=13% Similarity=0.176 Sum_probs=109.0
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe-------EEEeccccC
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF-------VYTSCLSCY 118 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~-------~yVnc~~~~ 118 (535)
+-+|..++++. |-+.-+..|.+.+... ..++ ++++||+|||||++++.+.+.+.... ..-.|..|.
T Consensus 9 KyRP~~f~dvi----GQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 9 KYRPRSFSEMV----GQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred HHCCCCHHHhc----CcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 34677777554 5578888888888763 4566 58999999999999999999986421 112466775
Q ss_pred CHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCc
Q 009415 119 SPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFE 198 (535)
Q Consensus 119 s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d 198 (535)
+.+.+-..-.-.+.. -++. .-..+ +.++++++..... . ..++.-|+||||+|
T Consensus 83 ~C~~i~~g~h~D~~e-----ldaa----s~~~V----d~iReli~~~~~~--------------p-~~g~~KV~IIDEvh 134 (618)
T PRK14951 83 ACRDIDSGRFVDYTE-----LDAA----SNRGV----DEVQQLLEQAVYK--------------P-VQGRFKVFMIDEVH 134 (618)
T ss_pred HHHHHHcCCCCceee-----cCcc----cccCH----HHHHHHHHHHHhC--------------c-ccCCceEEEEEChh
Confidence 554331100000000 0110 00122 2344444432110 1 13456688899999
Q ss_pred ccccccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 199 LVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 199 ~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+|.. +-+..|++.-|..+ .++.+||+++++ +..+++|+ ..+.|.+++.+++.+.|...
T Consensus 135 ~Ls~-----~a~NaLLKtLEEPP-~~~~fIL~Ttd~~kil~TIlSRc-----~~~~f~~Ls~eei~~~L~~i 195 (618)
T PRK14951 135 MLTN-----TAFNAMLKTLEEPP-EYLKFVLATTDPQKVPVTVLSRC-----LQFNLRPMAPETVLEHLTQV 195 (618)
T ss_pred hCCH-----HHHHHHHHhcccCC-CCeEEEEEECCchhhhHHHHHhc-----eeeecCCCCHHHHHHHHHHH
Confidence 9953 44777888766643 468899988764 33455554 79999999999999998753
No 48
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.98 E-value=7e-09 Score=117.12 Aligned_cols=188 Identities=18% Similarity=0.231 Sum_probs=107.6
Q ss_pred ccccCCCCCHHHHhhcCCChHHHHH---HHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCH
Q 009415 44 LVFGQEPISLDDLLSRFPGRRVQIL---ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSP 120 (535)
Q Consensus 44 ~~f~~~~~~~~~l~~~~p~Re~qi~---~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~ 120 (535)
+..+.+|.+++ .+.|+++.+. .|..++.. ...++++|||||||||||+++.+.+..+..++.+||....
T Consensus 18 Laek~RP~tld----d~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~-- 89 (725)
T PRK13341 18 LADRLRPRTLE----EFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG-- 89 (725)
T ss_pred hHHhcCCCcHH----HhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh--
Confidence 34456677777 4567787774 46565554 3557899999999999999999999998888888863210
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccc
Q 009415 121 RILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELV 200 (535)
Q Consensus 121 r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L 200 (535)
+.+ ++..++...+.+. ..+...+|+|||+|++
T Consensus 90 ------------------------------i~d----ir~~i~~a~~~l~--------------~~~~~~IL~IDEIh~L 121 (725)
T PRK13341 90 ------------------------------VKD----LRAEVDRAKERLE--------------RHGKRTILFIDEVHRF 121 (725)
T ss_pred ------------------------------hHH----HHHHHHHHHHHhh--------------hcCCceEEEEeChhhC
Confidence 000 1111111111100 1224568999999998
Q ss_pred ccccCCCChHHHHHccccccCCCcEEEEEEeCCCcc-------ccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCC--h
Q 009415 201 REWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPD-------TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQAN--Q 271 (535)
Q Consensus 201 ~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~-------~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~--~ 271 (535)
.. .....|+...|. -.+++|+.+... .+.+|. ..+.|+|++.+++..||...... .
T Consensus 122 n~-----~qQdaLL~~lE~-----g~IiLI~aTTenp~~~l~~aL~SR~-----~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 122 NK-----AQQDALLPWVEN-----GTITLIGATTENPYFEVNKALVSRS-----RLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred CH-----HHHHHHHHHhcC-----ceEEEEEecCCChHhhhhhHhhccc-----cceecCCCCHHHHHHHHHHHHHHHHh
Confidence 53 122344443332 345555543322 233332 57999999999999999854320 0
Q ss_pred hhh---hHHHHhhhhcccccc-ccHHHHHHHHHHh
Q 009415 272 KLY---SSFLDIVLRPFCRIT-KRVDELSTAFSLL 302 (535)
Q Consensus 272 ~l~---~~f~~~vl~~~~~~~-rdl~eL~~~~~~L 302 (535)
.+. -.+-..+++.+...+ .|+.++..+++.+
T Consensus 187 ~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a 221 (725)
T PRK13341 187 GYGDRKVDLEPEAEKHLVDVANGDARSLLNALELA 221 (725)
T ss_pred hcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000 011133334444333 3676666666554
No 49
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.98 E-value=8.9e-09 Score=110.73 Aligned_cols=167 Identities=16% Similarity=0.225 Sum_probs=101.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (535)
..++||||++|+|||++++++.+++ +..++|++|. .+...+...+... ...+|.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~---------------~~~~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG---------------KLNEFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc---------------cHHHHH
Confidence 4569999999999999999999875 3567888863 3444555544211 222332
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-CCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-SSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
..++ ..+-+|+|||++.+...+. ..+++..|..+.+. +..+|++++..
T Consensus 189 ~~~~---------------------------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~----~k~iIitsd~~ 237 (440)
T PRK14088 189 EKYR---------------------------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS----GKQIVICSDRE 237 (440)
T ss_pred HHHH---------------------------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc----CCeEEEECCCC
Confidence 2110 1245889999998853211 12455555445543 23566666554
Q ss_pred ccc-------cccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccc-cccccHHHHHHHHHHhh
Q 009415 235 PDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC-RITKRVDELSTAFSLLF 303 (535)
Q Consensus 235 ~~~-------f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~-~~~rdl~eL~~~~~~L~ 303 (535)
|.. +.+|..+. ..+.|.|++.++..+||........+ .+=+.+++-+. +..+|+.+|..++..|.
T Consensus 238 p~~l~~l~~rL~SR~~~g--l~v~i~~pd~e~r~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 238 PQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKKIARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGAIIKLL 310 (440)
T ss_pred HHHHHHHHHHHhhHHhcC--ceEeeCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 332 33455433 58899999999999999865421111 01122333333 34568999998888873
No 50
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.97 E-value=1.4e-08 Score=107.61 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=95.7
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|-+.|+.+|...+.-+ ..++..+++|||||||||+++++++..++..++.+.+.+.
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l---------- 215 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF---------- 215 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH----------
Confidence 5778889998888766421 1233459999999999999999999999988888876322
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc--cC
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW--DK 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~--d~ 205 (535)
.....+. .. ..+++++.. .+ ...+.||+|||+|.+... +.
T Consensus 216 ~~k~~ge---------------~~----~~lr~lf~~----A~---------------~~~P~ILfIDEID~i~~~r~~~ 257 (398)
T PTZ00454 216 VQKYLGE---------------GP----RMVRDVFRL----AR---------------ENAPSIIFIDEVDSIATKRFDA 257 (398)
T ss_pred HHHhcch---------------hH----HHHHHHHHH----HH---------------hcCCeEEEEECHhhhccccccc
Confidence 1111110 00 112223321 11 225679999999998421 10
Q ss_pred C-------CChHHHHHc-cccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 S-------SSILPFLFG-LSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 ~-------~~lL~~L~r-L~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
. ..++..|++ +.......++.||+++|.+ .+.++ +.|-+ ...|+|+.++.++-.+|+...
T Consensus 258 ~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAll-R~GRf-d~~I~~~~P~~~~R~~Il~~~ 328 (398)
T PTZ00454 258 QTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALL-RPGRL-DRKIEFPLPDRRQKRLIFQTI 328 (398)
T ss_pred cCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHc-CCCcc-cEEEEeCCcCHHHHHHHHHHH
Confidence 0 113334433 2222222467888888764 22233 33322 258999999999987777643
No 51
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=4e-09 Score=116.78 Aligned_cols=181 Identities=18% Similarity=0.158 Sum_probs=111.1
Q ss_pred CCccccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE-------EEe
Q 009415 42 GDLVFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV-------YTS 113 (535)
Q Consensus 42 ~~~~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~-------yVn 113 (535)
.-+...-+|.+++ .+.|.+..++.|.+.+... ..++ ++++||+|+|||++++.+++.+..... +-.
T Consensus 12 ~~la~KyRP~~f~----dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 12 RVLARKYRPQTFD----DLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhHHhhhCCCCHH----HhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 3344455777777 5567799999999988752 4454 889999999999999999999864321 124
Q ss_pred ccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEE
Q 009415 114 CLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLI 193 (535)
Q Consensus 114 c~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlV 193 (535)
|..|.+.+.+.+...-.+..- + +.....+ +.++++++.+... ...++.-|||
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~-----~----a~s~~gv----d~IReIie~~~~~---------------P~~a~~KVvI 137 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEM-----D----AASHTGV----DDIREIIESVRYR---------------PVSARYKVYI 137 (598)
T ss_pred CcccHHHHHHhcCCCCceEEe-----c----ccccCCH----HHHHHHHHHHHhc---------------hhcCCcEEEE
Confidence 666654433222110000000 0 0011122 2344444432110 1123456788
Q ss_pred EeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 194 FDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 194 LDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
|||+|.|.. .-+..|++.-|..+ +++++||+++.. +..+.+|+ ..+.|.+++.+++.++|...
T Consensus 138 IDEad~Ls~-----~a~naLLKtLEePp-~~~~fIl~tte~~kll~tI~SRc-----q~~~f~~l~~~el~~~L~~i 203 (598)
T PRK09111 138 IDEVHMLST-----AAFNALLKTLEEPP-PHVKFIFATTEIRKVPVTVLSRC-----QRFDLRRIEADVLAAHLSRI 203 (598)
T ss_pred EEChHhCCH-----HHHHHHHHHHHhCC-CCeEEEEEeCChhhhhHHHHhhe-----eEEEecCCCHHHHHHHHHHH
Confidence 999999953 34667776656543 578899988654 22233443 68999999999999998764
No 52
>PRK06893 DNA replication initiation factor; Validated
Probab=98.96 E-value=6.8e-09 Score=102.12 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=92.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (535)
.|.+|||||||||||++++++++++ +....|+++.... .+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~----------------------------------~~--- 81 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ----------------------------------YF--- 81 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh----------------------------------hh---
Confidence 3568999999999999999999875 3566777752100 00
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCC-CChHHHHHccccccCCCcEEEEEE-eCCCc
Q 009415 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS-SSILPFLFGLSDILKMPEVGMIFI-SSTSP 235 (535)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~-~~lL~~L~rL~E~~~~~~l~vI~I-s~~~~ 235 (535)
..+.++.+ ...-+|||||++.+...+.. ..++..+-++.+. +..+|++ ++..|
T Consensus 82 ~~~~~~~~---------------------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~----~~~illits~~~p 136 (229)
T PRK06893 82 SPAVLENL---------------------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ----GKTLLLISADCSP 136 (229)
T ss_pred hHHHHhhc---------------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc----CCcEEEEeCCCCh
Confidence 00112111 12358999999988421111 2344444444442 3345444 45543
Q ss_pred c-------ccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhcc-ccccccHHHHHHHHHHhh
Q 009415 236 D-------TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPF-CRITKRVDELSTAFSLLF 303 (535)
Q Consensus 236 ~-------~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~-~~~~rdl~eL~~~~~~L~ 303 (535)
. ++.+|.++. ..+.+++++.++..+||.+......+ ..=+.+++-+ .+..+|+..|..++..|.
T Consensus 137 ~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 137 HALSIKLPDLASRLTWG--EIYQLNDLTDEQKIIVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred HHccccchhHHHHHhcC--CeeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3 344454432 57889999999999999865421111 0012223322 345679999999998885
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.95 E-value=7.6e-09 Score=92.17 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s 119 (535)
++|+.++..+...+... ...+++|+|++|||||++++.+++.+ +..+++++|.+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 57889999998887552 34579999999999999999999998 78899999866543
No 54
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.95 E-value=8.2e-09 Score=104.40 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh--cCC---CeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--LSR---PFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~--l~~---~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~ 137 (535)
||.++++|...|.........+.|+|++|+|||+++..+++. ..- .+++|++....+...+++.|+.+|......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999875444556999999999999999999987 432 356888888878889999999999754211
Q ss_pred ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccc
Q 009415 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLS 217 (535)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~ 217 (535)
. ....+..+....+.+.+ .+++++||||+++....++ .+...+ .
T Consensus 81 ~-------~~~~~~~~~~~~l~~~L-----------------------~~~~~LlVlDdv~~~~~~~---~l~~~~---~ 124 (287)
T PF00931_consen 81 I-------SDPKDIEELQDQLRELL-----------------------KDKRCLLVLDDVWDEEDLE---ELREPL---P 124 (287)
T ss_dssp S-------SCCSSHHHHHHHHHHHH-----------------------CCTSEEEEEEEE-SHHHH-------------H
T ss_pred c-------ccccccccccccchhhh-----------------------ccccceeeeeeeccccccc---cccccc---c
Confidence 1 01223333222222222 2247899999999776543 233222 1
Q ss_pred cccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 218 DILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 218 E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.. ..+..+|++|... ......+. ....+...+.+.+|..+++....
T Consensus 125 ~~--~~~~kilvTTR~~--~v~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~ 170 (287)
T PF00931_consen 125 SF--SSGSKILVTTRDR--SVAGSLGG-TDKVIELEPLSEEEALELFKKRA 170 (287)
T ss_dssp CH--HSS-EEEEEESCG--GGGTTHHS-CEEEEECSS--HHHHHHHHHHHH
T ss_pred cc--ccccccccccccc--cccccccc-ccccccccccccccccccccccc
Confidence 22 1256777777663 22222211 12589999999999999998653
No 55
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=5e-09 Score=115.48 Aligned_cols=174 Identities=18% Similarity=0.150 Sum_probs=107.7
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~ 124 (535)
-+|..++++ .|-+..++.|.+.+.. +..++ ++++||+||||||+++.+++.+.... .--.|.+|.+.+.+-
T Consensus 7 yRP~~f~ei----vGq~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 80 (584)
T PRK14952 7 YRPATFAEV----VGQEHVTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80 (584)
T ss_pred hCCCcHHHh----cCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhh
Confidence 357777744 4668888999998876 35667 57999999999999999999987432 123577776544321
Q ss_pred HHHHHHHhhcccc--ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 125 ESILNQLLLHKKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 125 ~~Il~~L~~~~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
. .-.++ .+ ..++. ..-.+ +.++++.+..... ...++.-|+||||+|.|..
T Consensus 81 ~----~~~~~-~dvieidaa----s~~gv----d~iRel~~~~~~~---------------P~~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 81 P----NGPGS-IDVVELDAA----SHGGV----DDTRELRDRAFYA---------------PAQSRYRIFIVDEAHMVTT 132 (584)
T ss_pred c----ccCCC-ceEEEeccc----cccCH----HHHHHHHHHHHhh---------------hhcCCceEEEEECCCcCCH
Confidence 1 00000 00 00110 00122 2233333332110 0123456888999999963
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.-+.+|++.-|..+ .++++||+++.+ +..+.+|+ .++.|.+++.+++.+.|..
T Consensus 133 -----~A~NALLK~LEEpp-~~~~fIL~tte~~kll~TI~SRc-----~~~~F~~l~~~~i~~~L~~ 188 (584)
T PRK14952 133 -----AGFNALLKIVEEPP-EHLIFIFATTEPEKVLPTIRSRT-----HHYPFRLLPPRTMRALIAR 188 (584)
T ss_pred -----HHHHHHHHHHhcCC-CCeEEEEEeCChHhhHHHHHHhc-----eEEEeeCCCHHHHHHHHHH
Confidence 45677777767653 578889888654 22333443 6999999999999988875
No 56
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=4.4e-09 Score=114.95 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=106.6
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l 123 (535)
+-+|..++++ .|-+..+..|.+.+... ..++ ++++||+|+|||++++.+++.+.... .--.|..|.+.+.+
T Consensus 9 KyRP~~f~di----iGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 9 KYRPQSFAEV----AGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred HHCcCcHHHh----cCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3467777744 46688888898888652 4455 67999999999999999999886321 11236666544432
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-..-.-.+.. .++. ....+. .++++++.+... ...++..|+||||+|++..
T Consensus 83 ~~~~~~dlie-----idaa----s~~gvd----~ir~ii~~~~~~---------------p~~g~~kViIIDEa~~ls~- 133 (546)
T PRK14957 83 NNNSFIDLIE-----IDAA----SRTGVE----ETKEILDNIQYM---------------PSQGRYKVYLIDEVHMLSK- 133 (546)
T ss_pred hcCCCCceEE-----eecc----cccCHH----HHHHHHHHHHhh---------------hhcCCcEEEEEechhhccH-
Confidence 2100000000 0000 011222 233344332110 0133556889999999953
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.-+..|++.-|-.+ ..+.+||++++. +..+.+|+ ..+.|.+++.+++.+.|..
T Consensus 134 ----~a~naLLK~LEepp-~~v~fIL~Ttd~~kil~tI~SRc-----~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 134 ----QSFNALLKTLEEPP-EYVKFILATTDYHKIPVTILSRC-----IQLHLKHISQADIKDQLKI 189 (546)
T ss_pred ----HHHHHHHHHHhcCC-CCceEEEEECChhhhhhhHHHhe-----eeEEeCCCCHHHHHHHHHH
Confidence 45667777767643 468889888763 22344444 7999999999999988875
No 57
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=4.4e-09 Score=113.47 Aligned_cols=176 Identities=18% Similarity=0.221 Sum_probs=107.8
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~~~--yVnc~~~~s~r~l 123 (535)
+-+|.+++++. |-+..++.|.+.+... ..+ .++++||+|+||||+++.+.+.+....- .-.|..|.+.+.+
T Consensus 6 KyRP~~f~dli----GQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 6 KYRPSSFKDLV----GQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred HhCCCCHHHhc----CcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 44677888555 4488888888877652 445 4889999999999999999998853221 1246666544432
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-+...-.+.. -++. .-.++.+ ++.+++..... ...++.-|+||||+|.|..
T Consensus 80 ~~~~~~Dv~e-----idaa----s~~~vdd----IR~Iie~~~~~---------------P~~~~~KVvIIDEah~Ls~- 130 (491)
T PRK14964 80 KNSNHPDVIE-----IDAA----SNTSVDD----IKVILENSCYL---------------PISSKFKVYIIDEVHMLSN- 130 (491)
T ss_pred hccCCCCEEE-----Eecc----cCCCHHH----HHHHHHHHHhc---------------cccCCceEEEEeChHhCCH-
Confidence 2110000000 0111 1112333 34444432110 1133566888999999953
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.-+.+|++.-|..+ +++.+||+++.. +..+.+|+ ..+.|.+++.+++.++|...
T Consensus 131 ----~A~NaLLK~LEePp-~~v~fIlatte~~Kl~~tI~SRc-----~~~~f~~l~~~el~~~L~~i 187 (491)
T PRK14964 131 ----SAFNALLKTLEEPA-PHVKFILATTEVKKIPVTIISRC-----QRFDLQKIPTDKLVEHLVDI 187 (491)
T ss_pred ----HHHHHHHHHHhCCC-CCeEEEEEeCChHHHHHHHHHhh-----eeeecccccHHHHHHHHHHH
Confidence 34677777666654 578889888654 22334444 68999999999999999864
No 58
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=3.8e-09 Score=116.30 Aligned_cols=178 Identities=15% Similarity=0.200 Sum_probs=107.9
Q ss_pred cccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHH
Q 009415 45 VFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRI 122 (535)
Q Consensus 45 ~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~ 122 (535)
..+-+|..++++. |-+..+..|.+.+... .-.+.++++||+|||||++++.+.+.+.... .--.|.+|.+.+.
T Consensus 7 a~KyRP~sf~dIi----GQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 7 TARYRPQTFAEVA----GQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred HHHhCCCCHHHhc----CCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 3445777888665 5577778888887652 1134577899999999999999999986431 1225777766654
Q ss_pred HHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
++....-.+.. .++. ....++ .++.+.+.+ ... ...++..||||||+|.|..
T Consensus 82 i~~g~hpDv~e-----Id~a----~~~~Id----~iR~L~~~~-~~~--------------p~~g~~kVIIIDEad~Lt~ 133 (624)
T PRK14959 82 VTQGMHVDVVE-----IDGA----SNRGID----DAKRLKEAI-GYA--------------PMEGRYKVFIIDEAHMLTR 133 (624)
T ss_pred HhcCCCCceEE-----Eecc----cccCHH----HHHHHHHHH-Hhh--------------hhcCCceEEEEEChHhCCH
Confidence 43321100000 0110 001222 233322211 110 0123456888999999952
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+.+..|++.-|... +++.+|++++.. +..+.+|+ ..|.|++|+.+|+.++|..
T Consensus 134 -----~a~naLLk~LEEP~-~~~ifILaTt~~~kll~TI~SRc-----q~i~F~pLs~~eL~~~L~~ 189 (624)
T PRK14959 134 -----EAFNALLKTLEEPP-ARVTFVLATTEPHKFPVTIVSRC-----QHFTFTRLSEAGLEAHLTK 189 (624)
T ss_pred -----HHHHHHHHHhhccC-CCEEEEEecCChhhhhHHHHhhh-----hccccCCCCHHHHHHHHHH
Confidence 34677777666532 478888888764 22344444 5899999999999999975
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=7.3e-09 Score=112.82 Aligned_cols=211 Identities=16% Similarity=0.138 Sum_probs=114.7
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe-EEEeccccCCHHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF-VYTSCLSCYSPRILFE 125 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~-~yVnc~~~~s~r~l~~ 125 (535)
-+|..++++. |-+.-...|.+.+... ..++ +++||||||||||+++.+++.+.... ....|..|.+.+.+-.
T Consensus 8 yRP~~~~dvv----Gq~~v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 8 ARPITFDEVV----GQEHVKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred hCCCCHHHhc----ChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 3677777554 4477777888877662 4566 48999999999999999999986321 1235666665442221
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
.....+.. -++. ....+. .++++.+.+ ... ...++.-||||||+|.+.
T Consensus 82 ~~h~dv~e-----l~~~----~~~~vd----~iR~l~~~~-~~~--------------p~~~~~kVVIIDEad~ls---- 129 (504)
T PRK14963 82 GAHPDVLE-----IDAA----SNNSVE----DVRDLREKV-LLA--------------PLRGGRKVYILDEAHMMS---- 129 (504)
T ss_pred CCCCceEE-----eccc----ccCCHH----HHHHHHHHH-hhc--------------cccCCCeEEEEECccccC----
Confidence 10000000 0100 001121 223322221 100 012345688899999884
Q ss_pred CCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhcc
Q 009415 206 SSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPF 285 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~ 285 (535)
...+..|++.-|... +++.+|++++.+ ..+.....+ ....+.|.+++.+++.+.|.......++ .+=...++.+
T Consensus 130 -~~a~naLLk~LEep~-~~t~~Il~t~~~-~kl~~~I~S-Rc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~i 203 (504)
T PRK14963 130 -KSAFNALLKTLEEPP-EHVIFILATTEP-EKMPPTILS-RTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLV 203 (504)
T ss_pred -HHHHHHHHHHHHhCC-CCEEEEEEcCCh-hhCChHHhc-ceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHH
Confidence 234666766555532 467788887654 233221111 1268999999999999998754321111 0111223333
Q ss_pred cccc-ccHHHHHHHHHHh
Q 009415 286 CRIT-KRVDELSTAFSLL 302 (535)
Q Consensus 286 ~~~~-rdl~eL~~~~~~L 302 (535)
...+ .|+..+...++.+
T Consensus 204 a~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 204 ARLADGAMRDAESLLERL 221 (504)
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 3333 3666666666655
No 60
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=6.2e-09 Score=114.97 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=105.4
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFE 125 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~~ 125 (535)
+|.+++ .+.|.++.+..|.+.+... ..++ +++|||+|||||++++.+.+.+.... .-..|..|.+.+.+-.
T Consensus 11 rP~~f~----~viGq~~v~~~L~~~i~~~--~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 11 RPQTFE----DVVGQEHITKTLKNAIKQG--KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred CCCcHH----hccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 566666 5667789889998888762 4556 56799999999999999999986432 1235777765443322
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
...-.+.. -++ .....+ +.++++.+..... ...++.-|+||||+|.|..
T Consensus 85 g~~~dv~e-----ida----as~~~v----d~ir~i~~~v~~~---------------p~~~~~kViIIDE~~~Lt~--- 133 (559)
T PRK05563 85 GSLMDVIE-----IDA----ASNNGV----DEIRDIRDKVKYA---------------PSEAKYKVYIIDEVHMLST--- 133 (559)
T ss_pred CCCCCeEE-----eec----cccCCH----HHHHHHHHHHhhC---------------cccCCeEEEEEECcccCCH---
Confidence 10000000 011 001122 2344444332110 1134567888999999953
Q ss_pred CCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 206 SSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.-+.+|++.-|..+ +++.+|++++.+ +..+.+|+ ..+.|++++.+++.++|..
T Consensus 134 --~a~naLLKtLEepp-~~~ifIlatt~~~ki~~tI~SRc-----~~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 134 --GAFNALLKTLEEPP-AHVIFILATTEPHKIPATILSRC-----QRFDFKRISVEDIVERLKY 189 (559)
T ss_pred --HHHHHHHHHhcCCC-CCeEEEEEeCChhhCcHHHHhHh-----eEEecCCCCHHHHHHHHHH
Confidence 34677777666643 456777766543 22233344 6899999999999999875
No 61
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.92 E-value=1.6e-08 Score=103.99 Aligned_cols=151 Identities=14% Similarity=0.210 Sum_probs=95.3
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+|..++ .+.|.++....|...+.. +..|+ ++++||+|+|||++++++++.++..+.++||.. .....
T Consensus 16 rP~~~~----~~~~~~~~~~~l~~~~~~--~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~----- 83 (316)
T PHA02544 16 RPSTID----ECILPAADKETFKSIVKK--GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDF----- 83 (316)
T ss_pred CCCcHH----HhcCcHHHHHHHHHHHhc--CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHH-----
Confidence 466666 556678888888888765 33455 556999999999999999999988889999865 11110
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCC
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS 207 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~ 207 (535)
++..+..+.... ...+..-||||||+|.+.. .
T Consensus 84 ------------------------------i~~~l~~~~~~~--------------~~~~~~~vliiDe~d~l~~----~ 115 (316)
T PHA02544 84 ------------------------------VRNRLTRFASTV--------------SLTGGGKVIIIDEFDRLGL----A 115 (316)
T ss_pred ------------------------------HHHHHHHHHHhh--------------cccCCCeEEEEECcccccC----H
Confidence 011111111100 0012345888999999832 2
Q ss_pred ChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 208 SILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 208 ~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
+....|.++.|... .+..+|++++.. .+.+.++. ..+.|+.++.++..+|+.
T Consensus 116 ~~~~~L~~~le~~~-~~~~~Ilt~n~~~~l~~~l~sR~-----~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 116 DAQRHLRSFMEAYS-KNCSFIITANNKNGIIEPLRSRC-----RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred HHHHHHHHHHHhcC-CCceEEEEcCChhhchHHHHhhc-----eEEEeCCCCHHHHHHHHH
Confidence 23344444444432 467788888754 22333444 478999999999887765
No 62
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.92 E-value=2.2e-08 Score=101.72 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=78.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC-------CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS-------RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~-------~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (535)
.+++++||||||||++++.+.+.+. -++++++|.+ ++..+.++ ...
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~----------l~~~~~g~---------------~~~-- 111 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD----------LVGQYIGH---------------TAP-- 111 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH----------HhHhhccc---------------chH--
Confidence 3699999999999999988877652 2577777622 22222221 111
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc----cCCCChHHHHHccccccCCCcEEEEEE
Q 009415 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW----DKSSSILPFLFGLSDILKMPEVGMIFI 230 (535)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~----d~~~~lL~~L~rL~E~~~~~~l~vI~I 230 (535)
...+.++.. . .-+|+|||++.|... +.+.++...|+++.|... .++.||+.
T Consensus 112 --~~~~~~~~a--------------------~--~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-~~~~vI~a 166 (284)
T TIGR02880 112 --KTKEILKRA--------------------M--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-DDLVVILA 166 (284)
T ss_pred --HHHHHHHHc--------------------c--CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 122233210 1 148889999988310 112445566666555432 46777766
Q ss_pred eCCC-cccccc-CCC--CCCCeeEecCCCCHHHHHHHHhh
Q 009415 231 SSTS-PDTYHS-NTG--YVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 231 s~~~-~~~f~~-~~g--~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+... .+.|+. +.+ .+-+..|+||+|+.+|+.+|+..
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~ 206 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGL 206 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHH
Confidence 6543 333331 111 23346899999999999999874
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=7.7e-09 Score=118.14 Aligned_cols=215 Identities=17% Similarity=0.122 Sum_probs=122.4
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~--yVnc~~~~s~r~l 123 (535)
+-+|.++++| .|.+..++.|.+.+.. +..++ +++|||+|||||++++.+.+.|.+... .-.|.+|.+.+.+
T Consensus 8 KyRP~~f~ei----iGqe~v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~ 81 (824)
T PRK07764 8 RYRPATFAEV----IGQEHVTEPLSTALDS--GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAL 81 (824)
T ss_pred HhCCCCHHHh----cCcHHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHH
Confidence 3467777744 4668888889888875 34566 679999999999999999999974321 1147777665433
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-..--..+- . ...++.+ .-.+ +.++++.+.+... ...++.-|+||||+|+|..
T Consensus 82 ~~g~~~~~d--v-~eidaas----~~~V----d~iR~l~~~~~~~---------------p~~~~~KV~IIDEad~lt~- 134 (824)
T PRK07764 82 APGGPGSLD--V-TEIDAAS----HGGV----DDARELRERAFFA---------------PAESRYKIFIIDEAHMVTP- 134 (824)
T ss_pred HcCCCCCCc--E-EEecccc----cCCH----HHHHHHHHHHHhc---------------hhcCCceEEEEechhhcCH-
Confidence 211000000 0 0001100 0022 2333333322110 1123556788999999953
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhh
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLR 283 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~ 283 (535)
.-...|+++-|... .++++||+++.. ++++..+.+ ...+|.|.+.+.+++.++|......+++ .+=...+.
T Consensus 135 ----~a~NaLLK~LEEpP-~~~~fIl~tt~~-~kLl~TIrS-Rc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~ 205 (824)
T PRK07764 135 ----QGFNALLKIVEEPP-EHLKFIFATTEP-DKVIGTIRS-RTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLP 205 (824)
T ss_pred ----HHHHHHHHHHhCCC-CCeEEEEEeCCh-hhhhHHHHh-heeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHH
Confidence 45677777767654 578999988654 344322211 1268999999999999998763321111 00111222
Q ss_pred cccccc-ccHHHHHHHHHHhh
Q 009415 284 PFCRIT-KRVDELSTAFSLLF 303 (535)
Q Consensus 284 ~~~~~~-rdl~eL~~~~~~L~ 303 (535)
.+...+ .|+..+...+.+|.
T Consensus 206 lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 206 LVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHcCCCHHHHHHHHHHHH
Confidence 223322 36777777777765
No 64
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.89 E-value=6.8e-09 Score=108.48 Aligned_cols=208 Identities=17% Similarity=0.190 Sum_probs=115.6
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFE 125 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~~ 125 (535)
+|..++ .+.|.++.+..|...+... ..++ +++|||+|+|||++++.+++.+...- ..-.|..|.+.+.+..
T Consensus 9 rp~~~~----~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 9 RPQTFE----DVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred CCCcHh----hccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 344555 5568899999999888652 3444 77999999999999999999985331 1235777766544332
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
...-.+.. .+| .......+ ++++++.... ....+..-||||||+|.+..
T Consensus 83 ~~~~~~~~-----~~~----~~~~~~~~----~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~--- 131 (355)
T TIGR02397 83 GSSLDVIE-----IDA----ASNNGVDD----IREILDNVKY---------------APSSGKYKVYIIDEVHMLSK--- 131 (355)
T ss_pred CCCCCEEE-----eec----cccCCHHH----HHHHHHHHhc---------------CcccCCceEEEEeChhhcCH---
Confidence 10000000 011 01112222 2333332111 01123456888999999953
Q ss_pred CCChHHHHHccccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhh
Q 009415 206 SSSILPFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVL 282 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl 282 (535)
..+..|++.-|..+ +++.+|++++.+. ..+.++. ..+.|++|+.+|+.++|.......++ .+-...+
T Consensus 132 --~~~~~Ll~~le~~~-~~~~lIl~~~~~~~l~~~l~sr~-----~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~ 201 (355)
T TIGR02397 132 --SAFNALLKTLEEPP-EHVVFILATTEPHKIPATILSRC-----QRFDFKRIPLEDIVERLKKILDKEGI--KIEDEAL 201 (355)
T ss_pred --HHHHHHHHHHhCCc-cceeEEEEeCCHHHHHHHHHhhe-----eEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 23455555445432 4677788876541 1233333 58999999999999999863321111 0011222
Q ss_pred hccccc-cccHHHHHHHHHHhh
Q 009415 283 RPFCRI-TKRVDELSTAFSLLF 303 (535)
Q Consensus 283 ~~~~~~-~rdl~eL~~~~~~L~ 303 (535)
..+... ..|+..+...+.++.
T Consensus 202 ~~l~~~~~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 202 ELIARAADGSLRDALSLLDQLI 223 (355)
T ss_pred HHHHHHcCCChHHHHHHHHHHH
Confidence 222222 246766666666654
No 65
>CHL00181 cbbX CbbX; Provisional
Probab=98.89 E-value=3.6e-09 Score=107.45 Aligned_cols=134 Identities=22% Similarity=0.253 Sum_probs=79.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---C----CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---S----RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSD 153 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~----~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~ 153 (535)
+.+++++||||||||++++.+.+.+ + -+++++++.+ ++..+.++ ...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~----------l~~~~~g~---------------~~~- 112 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD----------LVGQYIGH---------------TAP- 112 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH----------HHHHHhcc---------------chH-
Confidence 3458999999999999999998764 2 1355666322 22222221 100
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc----cCCCChHHHHHccccccCCCcEEEEE
Q 009415 154 FVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW----DKSSSILPFLFGLSDILKMPEVGMIF 229 (535)
Q Consensus 154 f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~----d~~~~lL~~L~rL~E~~~~~~l~vI~ 229 (535)
...+.++. ..+ -||+|||++.|..- +.+.+....|+++.|-.. .++.||+
T Consensus 113 ---~~~~~l~~--------------------a~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-~~~~vI~ 166 (287)
T CHL00181 113 ---KTKEVLKK--------------------AMG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-DDLVVIF 166 (287)
T ss_pred ---HHHHHHHH--------------------ccC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 11222321 012 38999999998321 112566777777655432 4677777
Q ss_pred EeCCC-cccccc-C--CCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 230 ISSTS-PDTYHS-N--TGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 230 Is~~~-~~~f~~-~--~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.+... .+.|+. + ...+-+..|+|++|+.+|+.+|+..
T Consensus 167 ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~ 207 (287)
T CHL00181 167 AGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKI 207 (287)
T ss_pred eCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHH
Confidence 76542 223331 1 1123346999999999999999874
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.89 E-value=1.3e-08 Score=109.53 Aligned_cols=171 Identities=15% Similarity=0.220 Sum_probs=104.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (535)
...++||||++|+|||++++++.+.+ +..++|+++. .++..+...+....
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~------~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD------EFARKAVDILQKTH------------------- 194 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHHhh-------------------
Confidence 34579999999999999999999865 3567777753 35556665553210
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCC-CChHHHHHccccccCCCcEEEEEEeCC
Q 009415 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS-SSILPFLFGLSDILKMPEVGMIFISST 233 (535)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~-~~lL~~L~rL~E~~~~~~l~vI~Is~~ 233 (535)
+.++.+.+. ....-+|||||++.+...+.. ..++..|..+.+. +-.+|+.|+.
T Consensus 195 -----~~~~~~~~~-----------------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~----~k~iIltsd~ 248 (450)
T PRK14087 195 -----KEIEQFKNE-----------------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN----DKQLFFSSDK 248 (450)
T ss_pred -----hHHHHHHHH-----------------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc----CCcEEEECCC
Confidence 011112111 123458999999988521111 2344444344443 2356777766
Q ss_pred Ccc-------ccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhcccc-ccccHHHHHHHHHHhh
Q 009415 234 SPD-------TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCR-ITKRVDELSTAFSLLF 303 (535)
Q Consensus 234 ~~~-------~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~~-~~rdl~eL~~~~~~L~ 303 (535)
+|. ++.+|..+. ..+.+.+++.++..+||.+.....++.-.+-..+++.+.. ..+|+..|..++..|.
T Consensus 249 ~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 249 SPELLNGFDNRLITRFNMG--LSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred CHHHHhhccHHHHHHHhCC--ceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 543 333455433 6889999999999999987653322200233445554444 4458999998888874
No 67
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.88 E-value=9.2e-09 Score=110.81 Aligned_cols=174 Identities=18% Similarity=0.212 Sum_probs=116.2
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFE 125 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l~~ 125 (535)
+|..++++ .|=|.-...|.+.+... ...+ -+++||.||||||+.|-+++.|++. ...-.|.+|.+.+.+-.
T Consensus 11 RP~~F~ev----vGQe~v~~~L~nal~~~--ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 11 RPKTFDDV----VGQEHVVKTLSNALENG--RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred CcccHHHh----cccHHHHHHHHHHHHhC--cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 57777766 55588888898888663 4455 4589999999999999999999865 33446777776543322
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
.-.-.+..... . .-.. ++.++++.++... .+. .++.-|.+|||++.|.
T Consensus 85 g~~~DviEiDa-----A----Sn~g----VddiR~i~e~v~y--------------~P~-~~ryKVyiIDEvHMLS---- 132 (515)
T COG2812 85 GSLIDVIEIDA-----A----SNTG----VDDIREIIEKVNY--------------APS-EGRYKVYIIDEVHMLS---- 132 (515)
T ss_pred CCcccchhhhh-----h----hccC----hHHHHHHHHHhcc--------------CCc-cccceEEEEecHHhhh----
Confidence 21111111100 0 0012 2234455554321 122 3455677799999996
Q ss_pred CCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 SSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
...+.+|++.-|-.+ ++|.+||.+.++ |...++|+ .+++|...+.++|+.-|..-
T Consensus 133 -~~afNALLKTLEEPP-~hV~FIlATTe~~Kip~TIlSRc-----q~f~fkri~~~~I~~~L~~i 190 (515)
T COG2812 133 -KQAFNALLKTLEEPP-SHVKFILATTEPQKIPNTILSRC-----QRFDFKRLDLEEIAKHLAAI 190 (515)
T ss_pred -HHHHHHHhcccccCc-cCeEEEEecCCcCcCchhhhhcc-----ccccccCCCHHHHHHHHHHH
Confidence 467889998777755 689999988774 77778877 79999999999999888753
No 68
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.88 E-value=1.6e-08 Score=98.66 Aligned_cols=137 Identities=9% Similarity=0.213 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccC
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFN 140 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~ 140 (535)
+.-+..|..++.. ....+++|+|++|||||++++.+.+.. +.+++|++|......
T Consensus 23 ~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~-------------------- 80 (226)
T TIGR03420 23 AELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA-------------------- 80 (226)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--------------------
Confidence 3445555555432 235679999999999999999999876 367889998543210
Q ss_pred CCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-CCChHHHHHccccc
Q 009415 141 GYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-SSSILPFLFGLSDI 219 (535)
Q Consensus 141 g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~ 219 (535)
. ...++.+ . ..-+|||||+|.+..... ...++..+-++.+.
T Consensus 81 ----------~-------~~~~~~~-~--------------------~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~ 122 (226)
T TIGR03420 81 ----------D-------PEVLEGL-E--------------------QADLVCLDDVEAIAGQPEWQEALFHLYNRVREA 122 (226)
T ss_pred ----------H-------HHHHhhc-c--------------------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc
Confidence 0 0111110 1 123788999999853100 01222222222221
Q ss_pred cCCCcEEEEEEeCCCcc-------ccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 220 LKMPEVGMIFISSTSPD-------TYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 220 ~~~~~l~vI~Is~~~~~-------~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+..+|+.++..+. .+.++... ...|.+||++.+|+..+|..
T Consensus 123 ----~~~iIits~~~~~~~~~~~~~L~~r~~~--~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 123 ----GGRLLIAGRAAPAQLPLRLPDLRTRLAW--GLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred ----CCeEEEECCCChHHCCcccHHHHHHHhc--CeeEecCCCCHHHHHHHHHH
Confidence 2467766665432 22233321 25899999999999999975
No 69
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=1.5e-08 Score=110.26 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=106.5
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l 123 (535)
.-+|..++++..+ +.-...|...+... ..++ +++|||+|+|||++++.+++.+... .-.-.|..|.+.+.+
T Consensus 7 KyRP~~fdeiiGq----e~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 7 KYRPKHFDELIGQ----ESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred HHCCCCHHHccCc----HHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4467778855544 77778888887653 4566 4799999999999999999987421 112245555544433
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
.+..--.+.. .++.+ . ..+. .+++.++.. .. . ...++.-|+||||+|.|.
T Consensus 81 ~~~~h~dv~e-----ldaas--~--~gId----~IRelie~~-~~------~--------P~~~~~KVvIIDEad~Lt-- 130 (535)
T PRK08451 81 LENRHIDIIE-----MDAAS--N--RGID----DIRELIEQT-KY------K--------PSMARFKIFIIDEVHMLT-- 130 (535)
T ss_pred hhcCCCeEEE-----ecccc--c--cCHH----HHHHHHHHH-hh------C--------cccCCeEEEEEECcccCC--
Confidence 2110000000 01100 0 0122 233333321 10 0 112356788899999995
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.+.+.+|++.-|..+ +++++||+++.+ ++.+.+|+ .+++|.+.+.+++.+.|...
T Consensus 131 ---~~A~NALLK~LEEpp-~~t~FIL~ttd~~kL~~tI~SRc-----~~~~F~~Ls~~ei~~~L~~I 188 (535)
T PRK08451 131 ---KEAFNALLKTLEEPP-SYVKFILATTDPLKLPATILSRT-----QHFRFKQIPQNSIISHLKTI 188 (535)
T ss_pred ---HHHHHHHHHHHhhcC-CceEEEEEECChhhCchHHHhhc-----eeEEcCCCCHHHHHHHHHHH
Confidence 345677888777654 578899998774 22344443 69999999999999988743
No 70
>PTZ00202 tuzin; Provisional
Probab=98.87 E-value=2.8e-07 Score=96.57 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=117.4
Q ss_pred hhcCCChHHHHHHHHHHHhccCCC-CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 57 LSRFPGRRVQILELLRLLGTLNSS-MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 57 ~~~~p~Re~qi~~L~~ll~~~~~~-~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
+..|.||+.|+.+|...|...... +..+.|.|++|+|||++++.++..++....|+|.. ++..++..|+.+|+...
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr---g~eElLr~LL~ALGV~p 337 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR---GTEDTLRSVVKALGVPN 337 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC---CHHHHHHHHHHHcCCCC
Confidence 348999999999999999764333 33578999999999999999999998776677764 77899999999997420
Q ss_pred ccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEe--CCcccccccCCCChHHHH
Q 009415 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFD--NFELVREWDKSSSILPFL 213 (535)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLD--e~d~L~~~d~~~~lL~~L 213 (535)
...-.++...+++.+..... .+++..||||- |-+.|. .+....
T Consensus 338 ------------~~~k~dLLrqIqeaLl~~~~-----------------e~GrtPVLII~lreg~~l~------rvyne~ 382 (550)
T PTZ00202 338 ------------VEACGDLLDFISEACRRAKK-----------------MNGETPLLVLKLREGSSLQ------RVYNEV 382 (550)
T ss_pred ------------cccHHHHHHHHHHHHHHHHH-----------------hCCCCEEEEEEecCCCcHH------HHHHHH
Confidence 01112444445444433211 12455555552 333331 122211
Q ss_pred HccccccCCCcEEEEEEeCC-----CccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccccc
Q 009415 214 FGLSDILKMPEVGMIFISST-----SPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCRI 288 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~-----~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~~~ 288 (535)
.-|.. ..++|.|.+--. +....+++. -....|+++.+|..+..+..- ++.-..+|++ +.-..
T Consensus 383 v~la~---drr~ch~v~evpleslt~~~~~lprl-----df~~vp~fsr~qaf~y~~h~~-dal~l~~fve----~vgtn 449 (550)
T PTZ00202 383 VALAC---DRRLCHVVIEVPLESLTIANTLLPRL-----DFYLVPNFSRSQAFAYTQHAI-DALSLEHFVD----VVGTN 449 (550)
T ss_pred HHHHc---cchhheeeeeehHhhcchhcccCccc-----eeEecCCCCHHHHHHHHhhcc-chHHhhHHHH----hhcCC
Confidence 11211 245676654211 111222333 245669999999999887443 3222335555 33445
Q ss_pred cccHHHHHHHHHH
Q 009415 289 TKRVDELSTAFSL 301 (535)
Q Consensus 289 ~rdl~eL~~~~~~ 301 (535)
..|+.||.....+
T Consensus 450 s~d~del~aav~q 462 (550)
T PTZ00202 450 SNDLDELLAAVRQ 462 (550)
T ss_pred cccHHHHHHHHHh
Confidence 5689988776644
No 71
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.2e-08 Score=107.04 Aligned_cols=156 Identities=20% Similarity=0.253 Sum_probs=95.3
Q ss_pred cCCChHHHHHHHHHHHhcc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+-|=+.++.+|..++..- ..++.-+++|||||||||.+++++..++++++..|++.+..+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS--------- 261 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS--------- 261 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc---------
Confidence 5677788998888877541 123345999999999999999999999999999999877543
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccc-------
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR------- 201 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~------- 201 (535)
|++ +++- ..+++++++. + ...++||+|||+|.+.
T Consensus 262 ------------GvS----GESE----kkiRelF~~A----~---------------~~aPcivFiDeIDAI~pkRe~aq 302 (802)
T KOG0733|consen 262 ------------GVS----GESE----KKIRELFDQA----K---------------SNAPCIVFIDEIDAITPKREEAQ 302 (802)
T ss_pred ------------ccC----cccH----HHHHHHHHHH----h---------------ccCCeEEEeecccccccchhhHH
Confidence 221 2221 2344455432 1 3368899999999994
Q ss_pred -cccCCCChHHHHHcc-ccccCC--CcEEEEEEeCCC-ccc---cccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 202 -EWDKSSSILPFLFGL-SDILKM--PEVGMIFISSTS-PDT---YHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 202 -~~d~~~~lL~~L~rL-~E~~~~--~~l~vI~Is~~~-~~~---f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
+|+ ..+...|+.. .++... .+-.|++|+.+. |+. -+.|.|-+. ..|-..-.++.+=.+||.
T Consensus 303 reME--rRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFd-rEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 303 REME--RRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFD-REICLGVPSETAREEILR 371 (802)
T ss_pred HHHH--HHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhcccccc-ceeeecCCchHHHHHHHH
Confidence 233 4456666554 343321 012355555443 333 345666443 244444455555444443
No 72
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=9.6e-09 Score=113.96 Aligned_cols=185 Identities=12% Similarity=0.066 Sum_probs=102.3
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCC---CCCCeEEECCCCCCHHHHHHHHHHhcCCCeE----EEeccccCC
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNS---SMPPLFVYGSASTGKTSIIIQVFRHLSRPFV----YTSCLSCYS 119 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~---~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~----yVnc~~~~s 119 (535)
...|..++ .+.+-++.+.+|..++....- +...++|+||+|||||++++.+++.++..+. .++|....+
T Consensus 77 KyrP~~ld----el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 77 KYKPETQH----ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred HhCCCCHH----HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 44566666 566668999999999877431 2223999999999999999999999875432 334433222
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcc
Q 009415 120 PRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFEL 199 (535)
Q Consensus 120 ~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~ 199 (535)
...+...+..++... ......|-..+...- ..++-. | ....++..||+|||++.
T Consensus 153 ~~~~~~s~~~~~~~~-------------~s~~~~F~~fl~~a~----~~~~~~------g---~~~~~~~~IILIDEiPn 206 (637)
T TIGR00602 153 DHKVTLSLESCFSNF-------------QSQIEVFSEFLLRAT----NKLQML------G---DDLMTDKKIILVEDLPN 206 (637)
T ss_pred ccccchhhhhccccc-------------cchHHHHHHHHHHHH----hhhccc------c---cccCCceeEEEeecchh
Confidence 221122222222110 112222222221110 000000 0 00124567999999998
Q ss_pred cccccCCCChHHHHHc-cccccCCCcEEEEEEeCCCcc------cc-cc--C-CC--C---CCCeeEecCCCCHHHHHHH
Q 009415 200 VREWDKSSSILPFLFG-LSDILKMPEVGMIFISSTSPD------TY-HS--N-TG--Y---VAPIHVYFPECTEDDLRQI 263 (535)
Q Consensus 200 L~~~d~~~~lL~~L~r-L~E~~~~~~l~vI~Is~~~~~------~f-~~--~-~g--~---~~p~~I~FppYt~~el~~I 263 (535)
+...+ ...++.+++ +..- ...+.+|+|+++.+. +. +. + ++ . ....+|.|+||+..++.+.
T Consensus 207 ~~~r~--~~~lq~lLr~~~~e--~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~ 282 (637)
T TIGR00602 207 QFYRD--TRALHEILRWKYVS--IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKF 282 (637)
T ss_pred hchhh--HHHHHHHHHHHhhc--CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHH
Confidence 86533 557888877 4322 246889998886432 10 11 0 00 1 1114799999999995554
Q ss_pred Hh
Q 009415 264 FM 265 (535)
Q Consensus 264 L~ 265 (535)
|.
T Consensus 283 L~ 284 (637)
T TIGR00602 283 LN 284 (637)
T ss_pred HH
Confidence 44
No 73
>CHL00176 ftsH cell division protein; Validated
Probab=98.87 E-value=1.5e-08 Score=113.11 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=94.9
Q ss_pred cCCChHHHHHHHHHHH---hccC-------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLL---GTLN-------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll---~~~~-------~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.|.++...+|..++ .... ..+..++++||||||||+++++++.+.++++++++|.+....
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~-------- 255 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-------- 255 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH--------
Confidence 3556566555554443 3221 123459999999999999999999999999999998653211
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc----
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---- 204 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d---- 204 (535)
..+ . ... .++.++... ....+.||+|||+|.+....
T Consensus 256 --~~g--------~-------~~~----~vr~lF~~A-------------------~~~~P~ILfIDEID~l~~~r~~~~ 295 (638)
T CHL00176 256 --FVG--------V-------GAA----RVRDLFKKA-------------------KENSPCIVFIDEIDAVGRQRGAGI 295 (638)
T ss_pred --hhh--------h-------hHH----HHHHHHHHH-------------------hcCCCcEEEEecchhhhhcccCCC
Confidence 100 0 011 123333221 12356899999999994210
Q ss_pred -----CCCChHHHHHccc-cccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 205 -----KSSSILPFLFGLS-DILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 205 -----~~~~lL~~L~rL~-E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.....+..|++.. ......++.||.++|.+ .+.++ +.|-+. ..|+|++++.++-.+||....
T Consensus 296 ~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALl-RpGRFd-~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 296 GGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALL-RPGRFD-RQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred CCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhh-ccccCc-eEEEECCCCHHHHHHHHHHHH
Confidence 0113455555432 22222456677777664 12222 233222 589999999999999998654
No 74
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.86 E-value=6.5e-09 Score=118.71 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=93.9
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.||++++.++...|... ..++++++||||||||++++.+.+.+ +..+..++|....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~--------- 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL--------- 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh---------
Confidence 36899999999999888653 34579999999999999999999886 2334444432111
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc---c
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW---D 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~---d 204 (535)
.+. ....+|...++++++.+. .....||+|||+|.|..- .
T Consensus 251 ----a~~--------------~~~g~~e~~l~~i~~~~~-------------------~~~~~ILfiDEih~l~~~g~~~ 293 (731)
T TIGR02639 251 ----AGT--------------KYRGDFEERLKAVVSEIE-------------------KEPNAILFIDEIHTIVGAGATS 293 (731)
T ss_pred ----hhc--------------cccchHHHHHHHHHHHHh-------------------ccCCeEEEEecHHHHhccCCCC
Confidence 000 012244455666665431 113679999999999631 0
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCC-ccc-------cccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS-PDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~-~~~-------f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.+..-...+++ +.+.. ..+.+|..++.. +.+ +.+|. ..|.+++++.+|+.+||...
T Consensus 294 ~~~~~~~~~L~-~~l~~-g~i~~IgaTt~~e~~~~~~~d~al~rRf-----~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 294 GGSMDASNLLK-PALSS-GKLRCIGSTTYEEYKNHFEKDRALSRRF-----QKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred CccHHHHHHHH-HHHhC-CCeEEEEecCHHHHHHHhhhhHHHHHhC-----ceEEeCCCCHHHHHHHHHHH
Confidence 11111222322 12221 246666665541 112 22222 47899999999999999853
No 75
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.86 E-value=3.3e-08 Score=99.28 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=38.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~ 124 (535)
..++++.|+||||||++++++.+.++.++..++|.+..+...++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLV 64 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHh
Confidence 56899999999999999999999999999999998866555443
No 76
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=9e-09 Score=112.94 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=105.8
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~ 124 (535)
-+|..++++ .|-+..++.|.+.+.. +..++ ++++||+|+|||++++.+++.+.... ..-.|..|.+.+.+-
T Consensus 10 ~rP~~f~di----vGq~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 10 WRPKSFSEL----VGQEHVVRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred hCCCcHHHh----cCcHHHHHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 456677754 4668888888888865 24556 57999999999999999999986432 112576665444221
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
..-.-.+.. .++ ..... ++.++++++..... ...++.-|+||||+|.|..
T Consensus 84 ~~~~~d~~e-----i~~----~~~~~----vd~ir~l~~~~~~~---------------p~~~~~kVvIIDEad~ls~-- 133 (527)
T PRK14969 84 SGRFVDLIE-----VDA----ASNTQ----VDAMRELLDNAQYA---------------PTRGRFKVYIIDEVHMLSK-- 133 (527)
T ss_pred cCCCCceeE-----eec----cccCC----HHHHHHHHHHHhhC---------------cccCCceEEEEcCcccCCH--
Confidence 100000000 000 00112 22344444432110 1134567888999999953
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.-+.+|++.-|..+ .++.+||+++.+ +..+.+|+ ..+.|.+++.+++.+.|..
T Consensus 134 ---~a~naLLK~LEepp-~~~~fIL~t~d~~kil~tI~SRc-----~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 134 ---SAFNAMLKTLEEPP-EHVKFILATTDPQKIPVTVLSRC-----LQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred ---HHHHHHHHHHhCCC-CCEEEEEEeCChhhCchhHHHHH-----HHHhcCCCCHHHHHHHHHH
Confidence 34566777656543 478899988764 22233333 6899999999999988765
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=1.3e-08 Score=111.69 Aligned_cols=174 Identities=16% Similarity=0.130 Sum_probs=103.6
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~ 124 (535)
-+|..++ .+.|++..+..|.+.+... ..++ ++++||+|+|||++++.+.+.+.... .--.|..|.+.+.+-
T Consensus 10 yRP~~F~----dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 10 YRPHNFK----QIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hCCCCHH----HhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 3676777 4558899999999988652 3454 78999999999999999999986321 112466665443222
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
... ..+. -.-++. ..-.+. .++.+.+.+... + ..++.-|+||||+|.|..
T Consensus 84 ~~~----h~Di-ieIdaa----s~igVd----~IReIi~~~~~~--------------P-~~~~~KVIIIDEad~Lt~-- 133 (605)
T PRK05896 84 TNQ----SVDI-VELDAA----SNNGVD----EIRNIIDNINYL--------------P-TTFKYKVYIIDEAHMLST-- 133 (605)
T ss_pred cCC----CCce-EEeccc----cccCHH----HHHHHHHHHHhc--------------h-hhCCcEEEEEechHhCCH--
Confidence 110 0000 000110 001222 233333322110 0 112345788999999852
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.-..+|++.-|-.+ +++.+|++++.+ +..+.+|+ ..+.|++++.+++..+|..
T Consensus 134 ---~A~NaLLKtLEEPp-~~tvfIL~Tt~~~KLl~TI~SRc-----q~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 134 ---SAWNALLKTLEEPP-KHVVFIFATTEFQKIPLTIISRC-----QRYNFKKLNNSELQELLKS 189 (605)
T ss_pred ---HHHHHHHHHHHhCC-CcEEEEEECCChHhhhHHHHhhh-----hhcccCCCCHHHHHHHHHH
Confidence 33566777656543 467778877653 22334444 6899999999999998885
No 78
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.83 E-value=4.7e-08 Score=112.35 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=101.5
Q ss_pred HhhcCCChHHHHHHHHHHHhcc----CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 56 LLSRFPGRRVQILELLRLLGTL----NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 56 l~~~~p~Re~qi~~L~~ll~~~----~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
+.+.++|-+...+.+..++... ...++.++++||||||||++++++++.++.+++.++|....... .+
T Consensus 318 l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~--------~i 389 (775)
T TIGR00763 318 LDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEA--------EI 389 (775)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHH--------HH
Confidence 4456888888888888766432 12345799999999999999999999999999999985543322 22
Q ss_pred hhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHH
Q 009415 132 LLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (535)
Q Consensus 132 ~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~ 211 (535)
.++.. ...|. .... +.+.+.. . ....+ ||+|||+|.+.. +...+...
T Consensus 390 ~g~~~-~~~g~-------~~g~----i~~~l~~---~----------------~~~~~-villDEidk~~~-~~~~~~~~ 436 (775)
T TIGR00763 390 RGHRR-TYVGA-------MPGR----IIQGLKK---A----------------KTKNP-LFLLDEIDKIGS-SFRGDPAS 436 (775)
T ss_pred cCCCC-ceeCC-------CCch----HHHHHHH---h----------------CcCCC-EEEEechhhcCC-ccCCCHHH
Confidence 22210 01111 1111 1122211 0 01123 788999999963 11233344
Q ss_pred HHHcccc------c--------cCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 212 FLFGLSD------I--------LKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 212 ~L~rL~E------~--------~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+|+.+-+ + ....++.+|+.+|.. ++.+++|. ..|.|++|+.++..+|+.+.
T Consensus 437 aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~-----~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 437 ALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRM-----EVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred HHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCe-----eEEecCCCCHHHHHHHHHHH
Confidence 4443322 1 112356667677764 45566665 47999999999999999753
No 79
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=3.3e-08 Score=103.09 Aligned_cols=174 Identities=13% Similarity=0.093 Sum_probs=99.2
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCC-------CeEE-EeccccCCHHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSR-------PFVY-TSCLSCYSPRILFESILN 129 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~-------~~~y-Vnc~~~~s~r~l~~~Il~ 129 (535)
.+.|-++....|...+... ..++ ++|+||+|+|||++++.+++.+.. +... ..|..|.+. ..|..
T Consensus 24 ~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c----~~i~~ 97 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVW----RQIAQ 97 (351)
T ss_pred hccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHH----HHHHc
Confidence 5567788888898888763 4565 889999999999999999998753 1111 134344432 22221
Q ss_pred HHhhc-----cc-cccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 130 QLLLH-----KK-NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 130 ~L~~~-----~~-~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
.-..+ .+ +...| ..++.-.+. .++++.+. +.. ....++..||||||+|.|..
T Consensus 98 ~~hPdl~~l~~~~~~~~~--~~~~~I~vd----~iR~l~~~-l~~--------------~~~~g~~rVviIDeAd~l~~- 155 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTG--KFKTAITVD----EIRRVGHF-LSQ--------------TSGDGNWRIVIIDPADDMNR- 155 (351)
T ss_pred CCCCCEEEeecccccccc--cccccCCHH----HHHHHHHH-hhh--------------ccccCCceEEEEEchhhcCH-
Confidence 10000 00 00000 000111222 23333222 221 01234567899999999953
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.-..+|++.-|..+ .+..+|++++.+ .++++..-+ ....++|+||+.+++.++|...
T Consensus 156 ----~aanaLLk~LEEpp-~~~~fiLit~~~-~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 156 ----NAANAILKTLEEPP-ARALFILISHSS-GRLLPTIRS-RCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ----HHHHHHHHHHhcCC-CCceEEEEECCh-hhccHHHHh-hccEEEecCCCHHHHHHHHHHh
Confidence 33455666556543 467778888664 333322211 1169999999999999999864
No 80
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.81 E-value=6.9e-08 Score=103.81 Aligned_cols=165 Identities=16% Similarity=0.260 Sum_probs=99.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (535)
..++||||++|+|||++++++...+ +.+++|+++.. +...+...+... ....|.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~------f~~~~~~~l~~~---------------~~~~f~-- 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL------FTEHLVSAIRSG---------------EMQRFR-- 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH------HHHHHHHHHhcc---------------hHHHHH--
Confidence 3569999999999999999999876 47788887532 233333333210 111111
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-CCChHHHHHccccccCCCcEEEEEEeCCCcc
Q 009415 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-SSSILPFLFGLSDILKMPEVGMIFISSTSPD 236 (535)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~ 236 (535)
.. ....-+|+|||++.+...+. ..+++..|-.+.+. +..+|+.|+.+|.
T Consensus 198 --~~------------------------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~----~k~IIlts~~~p~ 247 (445)
T PRK12422 198 --QF------------------------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE----GKLIVISSTCAPQ 247 (445)
T ss_pred --HH------------------------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC----CCcEEEecCCCHH
Confidence 11 12345889999999864221 12344444334432 3467777776543
Q ss_pred -------ccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhcc-ccccccHHHHHHHHHHh
Q 009415 237 -------TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPF-CRITKRVDELSTAFSLL 302 (535)
Q Consensus 237 -------~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~-~~~~rdl~eL~~~~~~L 302 (535)
++.+|..+. ..+.+++++.++..+||.......++ .+=..+++-+ .+..+|+.+|..++..|
T Consensus 248 ~l~~l~~rL~SR~~~G--l~~~l~~pd~e~r~~iL~~k~~~~~~--~l~~evl~~la~~~~~dir~L~g~l~~l 317 (445)
T PRK12422 248 DLKAMEERLISRFEWG--IAIPLHPLTKEGLRSFLERKAEALSI--RIEETALDFLIEALSSNVKSLLHALTLL 317 (445)
T ss_pred HHhhhHHHHHhhhcCC--eEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344555433 68999999999999999875432111 1113333322 34667888888888777
No 81
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.80 E-value=4.6e-08 Score=107.08 Aligned_cols=137 Identities=16% Similarity=0.100 Sum_probs=81.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (535)
+..+++|||||||||+++++++..++.++++++|.+..+ ...+. ... .+++
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~----------~~~g~---------------~~~----~l~~ 138 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE----------MFVGV---------------GAS----RVRD 138 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH----------HHhcc---------------cHH----HHHH
Confidence 346999999999999999999999999999988754321 11110 111 1233
Q ss_pred HHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc-C--------CCChHHHHHcc-ccccCCCcEEEEEE
Q 009415 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-K--------SSSILPFLFGL-SDILKMPEVGMIFI 230 (535)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d-~--------~~~lL~~L~rL-~E~~~~~~l~vI~I 230 (535)
+++.. + ...+.||+|||+|.+.... . ...++..|+.. .......++.||..
T Consensus 139 ~f~~a----~---------------~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a 199 (495)
T TIGR01241 139 LFEQA----K---------------KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 199 (495)
T ss_pred HHHHH----H---------------hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence 33321 1 1245799999999984211 0 01233334332 22222234566666
Q ss_pred eCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 231 SSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 231 s~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+|.+ .+.++ +.|-+. ..|+|+.++.++-.+||...
T Consensus 200 Tn~~~~ld~al~-r~gRfd-~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 200 TNRPDVLDPALL-RPGRFD-RQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred cCChhhcCHHHh-cCCcce-EEEEcCCCCHHHHHHHHHHH
Confidence 6654 12233 333222 58999999999999988754
No 82
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.79 E-value=1.4e-07 Score=97.12 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=94.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcc-----CCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTL-----NSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~-----~~~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+++...++-=...++++..-+... .-..| -+.||||||||||.++++++.++++.++.+++.+..+..
T Consensus 115 ~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~------ 188 (413)
T PLN00020 115 DNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN------ 188 (413)
T ss_pred hhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc------
Confidence 444444444444455544333221 12334 488999999999999999999999999999976654321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc-c-C
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-D-K 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~-d-~ 205 (535)
-+|+- ..+++.+...-+.. ...+.++||+|||+|.+... + .
T Consensus 189 -------------------vGEsE----k~IR~~F~~A~~~a--------------~~~~aPcVLFIDEIDA~~g~r~~~ 231 (413)
T PLN00020 189 -------------------AGEPG----KLIRQRYREAADII--------------KKKGKMSCLFINDLDAGAGRFGTT 231 (413)
T ss_pred -------------------CCcHH----HHHHHHHHHHHHHh--------------hccCCCeEEEEehhhhcCCCCCCC
Confidence 11111 12344443221110 12457899999999988531 1 1
Q ss_pred CC----ChH-HHHHccccc-------------cCCCcEEEEEEeCCCc--cccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 206 SS----SIL-PFLFGLSDI-------------LKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 206 ~~----~lL-~~L~rL~E~-------------~~~~~l~vI~Is~~~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
.. .++ ..|+.+.+- .....+-||..+|.+. +.=+.|.|-+. .. |...+.++-.+||.
T Consensus 232 ~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfD-k~--i~lPd~e~R~eIL~ 308 (413)
T PLN00020 232 QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRME-KF--YWAPTREDRIGVVH 308 (413)
T ss_pred CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCC-ce--eCCCCHHHHHHHHH
Confidence 11 122 445543221 1134677888888762 12223444322 12 34678999999987
Q ss_pred hc
Q 009415 266 RN 267 (535)
Q Consensus 266 ~~ 267 (535)
..
T Consensus 309 ~~ 310 (413)
T PLN00020 309 GI 310 (413)
T ss_pred HH
Confidence 54
No 83
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.6e-08 Score=107.57 Aligned_cols=213 Identities=12% Similarity=0.091 Sum_probs=117.5
Q ss_pred ccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe----------EEEec
Q 009415 46 FGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF----------VYTSC 114 (535)
Q Consensus 46 f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~----------~yVnc 114 (535)
..-+|..++ ++.|-+..+..|.+.+... ..++ +++|||+|+|||++++.+++.+.... .--.|
T Consensus 8 ~k~RP~~~~----eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 8 RKYRPKKFA----DITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred HhcCCCcHh----hccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 345677777 4556688888888888763 4566 78999999999999999999986421 11257
Q ss_pred cccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEE
Q 009415 115 LSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIF 194 (535)
Q Consensus 115 ~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVL 194 (535)
.+|.+.+.+....--.+. ..+|. ....++ .++++.+.+... ...++..||||
T Consensus 82 ~~c~~c~~~~~~~~~n~~-----~~~~~----~~~~id----~Ir~l~~~~~~~---------------p~~~~~kvvII 133 (397)
T PRK14955 82 GECESCRDFDAGTSLNIS-----EFDAA----SNNSVD----DIRLLRENVRYG---------------PQKGRYRVYII 133 (397)
T ss_pred CCCHHHHHHhcCCCCCeE-----eeccc----ccCCHH----HHHHHHHHHhhc---------------hhcCCeEEEEE
Confidence 777665533321000000 00110 111122 233333322110 11235568889
Q ss_pred eCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhh
Q 009415 195 DNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLY 274 (535)
Q Consensus 195 De~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~ 274 (535)
||+|.+.. .-...|++.-|..+ +...+|++++.. ..+...... ....+.|++++.+++.+.|.......+.
T Consensus 134 dea~~l~~-----~~~~~LLk~LEep~-~~t~~Il~t~~~-~kl~~tl~s-R~~~v~f~~l~~~ei~~~l~~~~~~~g~- 204 (397)
T PRK14955 134 DEVHMLSI-----AAFNAFLKTLEEPP-PHAIFIFATTEL-HKIPATIAS-RCQRFNFKRIPLEEIQQQLQGICEAEGI- 204 (397)
T ss_pred eChhhCCH-----HHHHHHHHHHhcCC-CCeEEEEEeCCh-HHhHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 99999963 12344555444432 467778877553 333321110 1157899999999999988754321110
Q ss_pred hHHHHhhhhccccccc-cHHHHHHHHHHh
Q 009415 275 SSFLDIVLRPFCRITK-RVDELSTAFSLL 302 (535)
Q Consensus 275 ~~f~~~vl~~~~~~~r-dl~eL~~~~~~L 302 (535)
.+-...++.+...+. |+..+...+.++
T Consensus 205 -~i~~~al~~l~~~s~g~lr~a~~~L~kl 232 (397)
T PRK14955 205 -SVDADALQLIGRKAQGSMRDAQSILDQV 232 (397)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111223333334333 676666666654
No 84
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=5.9e-08 Score=108.49 Aligned_cols=169 Identities=19% Similarity=0.233 Sum_probs=102.2
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEE---EeccccCCHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVY---TSCLSCYSPRILF 124 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~y---Vnc~~~~s~r~l~ 124 (535)
+|..++++ .|-+..+..|...+... ..++ .++|||+|+|||++++.+++.+...... -.|..|.+.
T Consensus 13 RP~~f~dI----iGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~---- 82 (725)
T PRK07133 13 RPKTFDDI----VGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN---- 82 (725)
T ss_pred CCCCHHHh----cCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh----
Confidence 56666644 46688888898888652 4556 5699999999999999999998654321 234444321
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
.+..++...+- +..-.... .++++++.+... ...++.-|+||||+|.|..
T Consensus 83 -------~~~~~Dvieid--aasn~~vd----~IReLie~~~~~---------------P~~g~~KV~IIDEa~~LT~-- 132 (725)
T PRK07133 83 -------VNNSLDIIEMD--AASNNGVD----EIRELIENVKNL---------------PTQSKYKIYIIDEVHMLSK-- 132 (725)
T ss_pred -------hcCCCcEEEEe--ccccCCHH----HHHHHHHHHHhc---------------hhcCCCEEEEEEChhhCCH--
Confidence 11111100000 00001222 233444332110 1134556888999999953
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.-+.+|++.-|..+ +.+.+|++++.+ +..+.+|+ ..+.|.+++.+++.++|..
T Consensus 133 ---~A~NALLKtLEEPP-~~tifILaTte~~KLl~TI~SRc-----q~ieF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 133 ---SAFNALLKTLEEPP-KHVIFILATTEVHKIPLTILSRV-----QRFNFRRISEDEIVSRLEF 188 (725)
T ss_pred ---HHHHHHHHHhhcCC-CceEEEEEcCChhhhhHHHHhhc-----eeEEccCCCHHHHHHHHHH
Confidence 34667777666643 467788887653 22334444 6899999999999999975
No 85
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.78 E-value=4.4e-08 Score=93.84 Aligned_cols=160 Identities=19% Similarity=0.282 Sum_probs=98.7
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l-~~~~~yVnc~~~~s~r~l~~ 125 (535)
.-+|+.++ .++|-|+-+..|.-+... +..|+++|.|||||||||.+..+.+.| |-.+ -+
T Consensus 20 KYrP~~l~----dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~--------------ke 79 (333)
T KOG0991|consen 20 KYRPSVLQ----DIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLGDSY--------------KE 79 (333)
T ss_pred hhCchHHH----HhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhChhh--------------hh
Confidence 34565555 455558888777665544 468999999999999999999999876 3111 01
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
.++ .| ..+.+.|+ | ..+.-+..|-+. | -..+.+++-+|||||+|.+.+
T Consensus 80 ~vL-EL---NASdeRGI----------D---vVRn~IK~FAQ~-k-----------v~lp~grhKIiILDEADSMT~--- 127 (333)
T KOG0991|consen 80 AVL-EL---NASDERGI----------D---VVRNKIKMFAQK-K-----------VTLPPGRHKIIILDEADSMTA--- 127 (333)
T ss_pred Hhh-hc---cCcccccc----------H---HHHHHHHHHHHh-h-----------ccCCCCceeEEEeeccchhhh---
Confidence 111 11 11112222 1 223333333221 0 013678899999999999953
Q ss_pred CCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 206 SSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.--.+|.|-.|... ....+.+++|.. .+++.+|+ ..+.|...++.|+.+-|..
T Consensus 128 --gAQQAlRRtMEiyS-~ttRFalaCN~s~KIiEPIQSRC-----AiLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 128 --GAQQALRRTMEIYS-NTTRFALACNQSEKIIEPIQSRC-----AILRYSKLSDQQILKRLLE 183 (333)
T ss_pred --HHHHHHHHHHHHHc-ccchhhhhhcchhhhhhhHHhhh-----HhhhhcccCHHHHHHHHHH
Confidence 23467788888864 345677777764 44555665 4667888888887766653
No 86
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=2.2e-08 Score=111.03 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=106.5
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~ 124 (535)
-+|..++ .+.|-++.+..|.+.+... ..++ +++|||+|+|||++++.+++.+.... ..-.|..|.+.+.+-
T Consensus 10 ~RP~~f~----~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 10 YRPQTFS----DLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred hCCCCHH----HccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 3566677 5556688888898888662 4566 56999999999999999999986432 122577775544322
Q ss_pred HHHHHHHhhccccc--cCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 125 ESILNQLLLHKKNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 125 ~~Il~~L~~~~~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
. +...+. .+|.+ ...+ +.++++++.+.. .+ ..++.-|+||||+|.|..
T Consensus 84 ~-------g~~~d~~eid~~s----~~~v----~~ir~l~~~~~~--------------~p-~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 84 E-------GRSVDVFEIDGAS----NTGV----DDIRELRENVKY--------------LP-SRSRYKIFIIDEVHMLST 133 (576)
T ss_pred c-------CCCCCeeeeeccC----ccCH----HHHHHHHHHHHh--------------cc-ccCCceEEEEEChhhCCH
Confidence 1 110000 01110 1122 223334433211 01 123456788999999953
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.-+.+|++.-|..+ +++.+||+++.+ +..+.+|+ ..+.|.+++.+++.+.|..
T Consensus 134 -----~a~naLLk~LEepp-~~~~fIl~t~~~~kl~~tI~SRc-----~~~~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 134 -----NAFNALLKTLEEPP-PHVKFIFATTEPHKVPITILSRC-----QRFDFRRIPLQKIVDRLRY 189 (576)
T ss_pred -----HHHHHHHHHHHcCC-CCeEEEEEeCChhhhhHHHHHhh-----hhhhcCCCCHHHHHHHHHH
Confidence 34567777666643 578899988764 23344444 6899999999999988864
No 87
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.77 E-value=1.6e-07 Score=107.64 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=84.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
..+++|||||||||++++++...++.+++.+++.+..+. .. | ++ ...++++
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~----------~v--------G-------es----e~~i~~~ 538 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK----------WV--------G-------ES----EKAIREI 538 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc----------cc--------C-------cH----HHHHHHH
Confidence 359999999999999999999999999999887543211 11 1 01 0123333
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-------CCChHHHHHcc-ccccCCCcEEEEEEeCC
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-------SSSILPFLFGL-SDILKMPEVGMIFISST 233 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-------~~~lL~~L~rL-~E~~~~~~l~vI~Is~~ 233 (535)
++.. + ...+.||+|||+|.|....+ ...++..|+.. .......++.||..+|.
T Consensus 539 f~~A----~---------------~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~ 599 (733)
T TIGR01243 539 FRKA----R---------------QAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNR 599 (733)
T ss_pred HHHH----H---------------hcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Confidence 3321 1 22568999999999852111 01344444432 22222346777777777
Q ss_pred Cc--cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 234 SP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 234 ~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
++ +.-+.|.|-+. ..|+||.++.++-.+|+...
T Consensus 600 ~~~ld~allRpgRfd-~~i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 600 PDILDPALLRPGRFD-RLILVPPPDEEARKEIFKIH 634 (733)
T ss_pred hhhCCHhhcCCCccc-eEEEeCCcCHHHHHHHHHHH
Confidence 51 12222333222 58999999999999998643
No 88
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=4.4e-08 Score=106.34 Aligned_cols=209 Identities=14% Similarity=0.172 Sum_probs=112.2
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~--yVnc~~~~s~r~l~ 124 (535)
-+|..+++ +.|-+.-+..|.+.+... ..++ +++|||+|+|||++++.+.+.+..... .-.|..|.+...+-
T Consensus 10 yRP~~f~d----iiGq~~i~~~L~~~i~~~--~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 10 YRPKFFKE----VIGQEIVVRILKNAVKLQ--RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hCCCcHHH----ccChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 35666664 446688888888888662 4556 458999999999999999998863210 01355553322111
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
..-...+.. -++. ...... .++.+.+.+ .. ....++.-|+||||+|.|..
T Consensus 84 ~g~~~d~~e-----idaa----s~~gvd----~ir~I~~~~-~~--------------~P~~~~~KVvIIDEad~Lt~-- 133 (486)
T PRK14953 84 KGSFPDLIE-----IDAA----SNRGID----DIRALRDAV-SY--------------TPIKGKYKVYIIDEAHMLTK-- 133 (486)
T ss_pred cCCCCcEEE-----EeCc----cCCCHH----HHHHHHHHH-Hh--------------CcccCCeeEEEEEChhhcCH--
Confidence 000000000 0000 001122 122222221 11 01134567889999999852
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhh
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIV 281 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~v 281 (535)
..+.+|++.-|..+ +++.+|++++.. ++.+.+++ ..|.|++++.+|+.++|.......++ .+=...
T Consensus 134 ---~a~naLLk~LEepp-~~~v~Il~tt~~~kl~~tI~SRc-----~~i~f~~ls~~el~~~L~~i~k~egi--~id~~a 202 (486)
T PRK14953 134 ---EAFNALLKTLEEPP-PRTIFILCTTEYDKIPPTILSRC-----QRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKA 202 (486)
T ss_pred ---HHHHHHHHHHhcCC-CCeEEEEEECCHHHHHHHHHHhc-----eEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHH
Confidence 33556666555532 466777776543 22333443 58999999999999999864322111 111122
Q ss_pred hhcccccc-ccHHHHHHHHHHhh
Q 009415 282 LRPFCRIT-KRVDELSTAFSLLF 303 (535)
Q Consensus 282 l~~~~~~~-rdl~eL~~~~~~L~ 303 (535)
+..+...+ .++..+...+.++.
T Consensus 203 l~~La~~s~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 203 LDLLAQASEGGMRDAASLLDQAS 225 (486)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 22333323 35666666666553
No 89
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.76 E-value=3e-08 Score=96.34 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=89.1
Q ss_pred HHHHHHHhccC---C-CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCC
Q 009415 68 LELLRLLGTLN---S-SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYS 143 (535)
Q Consensus 68 ~~L~~ll~~~~---~-~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~ 143 (535)
+-|..+|..+. + .+.++++|||||||||.+++++..+.++++..|++.+.. +.
T Consensus 134 rli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li-------------Ge---------- 190 (368)
T COG1223 134 RLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI-------------GE---------- 190 (368)
T ss_pred HHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH-------------HH----------
Confidence 34566665542 2 345899999999999999999999999999999864432 11
Q ss_pred CCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccc-c-----cc-CCCChHHHHHc-
Q 009415 144 SAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR-E-----WD-KSSSILPFLFG- 215 (535)
Q Consensus 144 ~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~-~-----~d-~~~~lL~~L~r- 215 (535)
.+.|-..+++++.+.. + ..-++|++|||+|.+. + .. .-+++..+|+.
T Consensus 191 ------hVGdgar~Ihely~rA----~---------------~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe 245 (368)
T COG1223 191 ------HVGDGARRIHELYERA----R---------------KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE 245 (368)
T ss_pred ------HhhhHHHHHHHHHHHH----H---------------hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh
Confidence 1111122344444321 1 2257899999999883 1 00 01344444432
Q ss_pred cccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 216 LSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 216 L~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
|.-......+|.|..+|.+ .....+|.. ..|.|.-.+++|...||...
T Consensus 246 lDgi~eneGVvtIaaTN~p~~LD~aiRsRFE----eEIEF~LP~~eEr~~ile~y 296 (368)
T COG1223 246 LDGIKENEGVVTIAATNRPELLDPAIRSRFE----EEIEFKLPNDEERLEILEYY 296 (368)
T ss_pred ccCcccCCceEEEeecCChhhcCHHHHhhhh----heeeeeCCChHHHHHHHHHH
Confidence 2111111345666555654 112223332 58899999999999999854
No 90
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.75 E-value=5.7e-08 Score=112.16 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=92.1
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
.+.||+++++++...|... ..++++++||||||||++++.+++.+. ++....|+. .+ .-=+..+.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~-i~------~l~l~~l~--- 255 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVR-LL------SLDLGLLQ--- 255 (852)
T ss_pred cccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCe-EE------Eeehhhhh---
Confidence 7899999999999877552 346789999999999999999998873 111111110 00 00000110
Q ss_pred ccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---CCCChHHH
Q 009415 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---KSSSILPF 212 (535)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d---~~~~lL~~ 212 (535)
.| .....+|...|+++++.... .+..+||+|||++.|..-. +..+. ..
T Consensus 256 ----ag------~~~~ge~e~~lk~ii~e~~~------------------~~~~~ILfIDEih~l~~~g~~~~~~d~-~n 306 (852)
T TIGR03345 256 ----AG------ASVKGEFENRLKSVIDEVKA------------------SPQPIILFIDEAHTLIGAGGQAGQGDA-AN 306 (852)
T ss_pred ----cc------cccchHHHHHHHHHHHHHHh------------------cCCCeEEEEeChHHhccCCCccccccH-HH
Confidence 00 11234666677777765421 2356899999999996311 12231 11
Q ss_pred HHccccccCCCcEEEEEEeCCC-ccc-------cccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 213 LFGLSDILKMPEVGMIFISSTS-PDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 213 L~rL~E~~~~~~l~vI~Is~~~-~~~-------f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
++. +-+. ...+.+|..++.. ..+ |.+|. ..|.+++++.++..+||.
T Consensus 307 ~Lk-p~l~-~G~l~~IgaTT~~e~~~~~~~d~AL~rRf-----~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 307 LLK-PALA-RGELRTIAATTWAEYKKYFEKDPALTRRF-----QVVKVEEPDEETAIRMLR 360 (852)
T ss_pred Hhh-HHhh-CCCeEEEEecCHHHHhhhhhccHHHHHhC-----eEEEeCCCCHHHHHHHHH
Confidence 111 1111 1245555544431 112 22222 589999999999999975
No 91
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.75 E-value=7.2e-08 Score=101.15 Aligned_cols=193 Identities=16% Similarity=0.234 Sum_probs=121.2
Q ss_pred CCCCCCCCCCCccccCCCCCHHHHhhcCCChHHHHHHHHHHHhc-cCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----
Q 009415 33 PNDSYIPTLGDLVFGQEPISLDDLLSRFPGRRVQILELLRLLGT-LNSSMPPLFVYGSASTGKTSIIIQVFRHLS----- 106 (535)
Q Consensus 33 ~~~~~~~~~~~~~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~-~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~----- 106 (535)
....+..|+++++-+......-++. ..+.. +....+++||||+.|.|||++++++.....
T Consensus 78 ~~l~~~ytFdnFv~g~~N~~A~aa~--------------~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~ 143 (408)
T COG0593 78 SGLNPKYTFDNFVVGPSNRLAYAAA--------------KAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPN 143 (408)
T ss_pred ccCCCCCchhheeeCCchHHHHHHH--------------HHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCC
Confidence 4566777888888886653222221 22222 122467899999999999999999998753
Q ss_pred CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccC
Q 009415 107 RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVN 186 (535)
Q Consensus 107 ~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~ 186 (535)
.+++|+ +...++...+..+... .+.+|.+ .+
T Consensus 144 a~v~y~------~se~f~~~~v~a~~~~---------------~~~~Fk~----------------------------~y 174 (408)
T COG0593 144 ARVVYL------TSEDFTNDFVKALRDN---------------EMEKFKE----------------------------KY 174 (408)
T ss_pred ceEEec------cHHHHHHHHHHHHHhh---------------hHHHHHH----------------------------hh
Confidence 345554 3445555555555421 2222221 12
Q ss_pred CcEEEEEEeCCcccccccC-CCChHHHHHccccccCCCcEEEEEEeCCCcc-------ccccCCCCCCCeeEecCCCCHH
Q 009415 187 GKMIYLIFDNFELVREWDK-SSSILPFLFGLSDILKMPEVGMIFISSTSPD-------TYHSNTGYVAPIHVYFPECTED 258 (535)
Q Consensus 187 ~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~-------~f~~~~g~~~p~~I~FppYt~~ 258 (535)
..-+++||+++.+...+. ..++|+.|.++.+.- -.+|+.|..+|. ++.+|..+. ..+...|++.+
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~----kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~Pd~e 247 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG----KQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEPPDDE 247 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC----CEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCCCCHH
Confidence 345888999999964311 256777777777652 256666654433 455666655 68999999999
Q ss_pred HHHHHHhhcCC------ChhhhhHHHHhhhhccccccccHHHHHHHHHHh
Q 009415 259 DLRQIFMRNQA------NQKLYSSFLDIVLRPFCRITKRVDELSTAFSLL 302 (535)
Q Consensus 259 el~~IL~~~~~------~~~l~~~f~~~vl~~~~~~~rdl~eL~~~~~~L 302 (535)
....||..... +++.. .|+. .+..+|+.+|..++..+
T Consensus 248 ~r~aiL~kka~~~~~~i~~ev~-~~la------~~~~~nvReLegaL~~l 290 (408)
T COG0593 248 TRLAILRKKAEDRGIEIPDEVL-EFLA------KRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHHHHHHHHHhcCCCCCHHHH-HHHH------HHhhccHHHHHHHHHHH
Confidence 99999997542 12222 2332 45778899999888776
No 92
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.74 E-value=1.5e-07 Score=94.63 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcc-CCCCCCeEEECCCCCCHHHHHHHHHHhcC---------CCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 66 QILELLRLLGTL-NSSMPPLFVYGSASTGKTSIIIQVFRHLS---------RPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 66 qi~~L~~ll~~~-~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---------~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
-+..|..++..+ ...+||++|+|+++.|||++++.+.+... +++++|.+....+.+.||..|+++|+...
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 345566666554 45789999999999999999999997653 68899999999999999999999996432
Q ss_pred ccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc--cCCCChHHHH
Q 009415 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW--DKSSSILPFL 213 (535)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~--d~~~~lL~~L 213 (535)
. ..++... +....-.++.. -+.-+|||||++.+... ....+++..|
T Consensus 125 ~----------~~~~~~~----~~~~~~~llr~------------------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L 172 (302)
T PF05621_consen 125 R----------PRDRVAK----LEQQVLRLLRR------------------LGVRMLIIDEFHNLLAGSYRKQREFLNAL 172 (302)
T ss_pred C----------CCCCHHH----HHHHHHHHHHH------------------cCCcEEEeechHHHhcccHHHHHHHHHHH
Confidence 1 1123332 11111122221 14568889999998521 1124667777
Q ss_pred HccccccCCCcEEEEEEeCCCc-------cccccCCCCCCCeeEecCCCCHHH
Q 009415 214 FGLSDILKMPEVGMIFISSTSP-------DTYHSNTGYVAPIHVYFPECTEDD 259 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~~~-------~~f~~~~g~~~p~~I~FppYt~~e 259 (535)
-.|.... ++.+|.++...- +.+-+|. ..+..|++..++
T Consensus 173 K~L~NeL---~ipiV~vGt~~A~~al~~D~QLa~RF-----~~~~Lp~W~~d~ 217 (302)
T PF05621_consen 173 KFLGNEL---QIPIVGVGTREAYRALRTDPQLASRF-----EPFELPRWELDE 217 (302)
T ss_pred HHHhhcc---CCCeEEeccHHHHHHhccCHHHHhcc-----CCccCCCCCCCc
Confidence 6676553 577888875421 1222232 356667777653
No 93
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.73 E-value=9e-08 Score=109.60 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=97.0
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|.+.++.+|..++... ..++..++||||||||||++++++.+.++.++++|+|.+..+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~------- 251 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK------- 251 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc-------
Confidence 4678999998888776421 1233469999999999999999999999999999998553221
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-C
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-S 206 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~ 206 (535)
.. | +. ...++.+++... ...+.||+|||+|.+..... .
T Consensus 252 ---~~--------g-------~~----~~~l~~lf~~a~-------------------~~~p~il~iDEid~l~~~r~~~ 290 (733)
T TIGR01243 252 ---YY--------G-------ES----EERLREIFKEAE-------------------ENAPSIIFIDEIDAIAPKREEV 290 (733)
T ss_pred ---cc--------c-------HH----HHHHHHHHHHHH-------------------hcCCcEEEeehhhhhcccccCC
Confidence 00 0 00 112233332211 12457899999999853110 0
Q ss_pred -----CChHHHHHccccccC-CCcEEEEEEeCCCc--cccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 207 -----SSILPFLFGLSDILK-MPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 207 -----~~lL~~L~rL~E~~~-~~~l~vI~Is~~~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
..+...|+.+.+... ...+.||..+|.+. +.-+.+.+-+. ..|.|+.++.++-.+||....
T Consensus 291 ~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd-~~i~i~~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 291 TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFD-REIVIRVPDKRARKEILKVHT 359 (733)
T ss_pred cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhcc-EEEEeCCcCHHHHHHHHHHHh
Confidence 124455655543322 12345555555531 11122233222 588999999999999998543
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3e-08 Score=104.78 Aligned_cols=171 Identities=13% Similarity=0.163 Sum_probs=102.1
Q ss_pred cCCChHHHHHHHHHHHhccCC-------CCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE-EEeccccCCHHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLNS-------SMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV-YTSCLSCYSPRILFESILN 129 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~-------~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~-yVnc~~~~s~r~l~~~Il~ 129 (535)
.+.|-+..+..|.+.+..... ..++ ++++||+|+|||++++.+.+.+..... --.|.+|.+.+.+...
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~--- 82 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG--- 82 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC---
Confidence 566778888889988876421 1344 889999999999999999998753211 1357777666544321
Q ss_pred HHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCCh
Q 009415 130 QLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI 209 (535)
Q Consensus 130 ~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~l 209 (535)
.-++ ..-+......-. ++.++++++.+... ...++.-|++|||+|++.. .-
T Consensus 83 ----~hpD-~~~i~~~~~~i~----i~~iR~l~~~~~~~---------------p~~~~~kViiIDead~m~~-----~a 133 (394)
T PRK07940 83 ----THPD-VRVVAPEGLSIG----VDEVRELVTIAARR---------------PSTGRWRIVVIEDADRLTE-----RA 133 (394)
T ss_pred ----CCCC-EEEeccccccCC----HHHHHHHHHHHHhC---------------cccCCcEEEEEechhhcCH-----HH
Confidence 1010 000000000012 23344444332110 1123456888999999953 22
Q ss_pred HHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 210 LPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 210 L~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
...|++.-|..+ ++..+|++++.+ .+.+.+|+ ..|+|++.+.+++.++|...
T Consensus 134 anaLLk~LEep~-~~~~fIL~a~~~~~llpTIrSRc-----~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 134 ANALLKAVEEPP-PRTVWLLCAPSPEDVLPTIRSRC-----RHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred HHHHHHHhhcCC-CCCeEEEEECChHHChHHHHhhC-----eEEECCCCCHHHHHHHHHHh
Confidence 355666556543 456677777663 22344444 79999999999999999743
No 95
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.2e-07 Score=91.61 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=103.6
Q ss_pred hhcCCChHHHHHHHHHHHhccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009415 57 LSRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 57 ~~~~p~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~ 125 (535)
.+.+-|=+.||.++...+.-+. ..+..+++|||||||||.+++++..+-.+.++.|+..+.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel-------- 217 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL-------- 217 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH--------
Confidence 3456778999999888775431 123359999999999999999999999888888775332
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc--
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-- 203 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~-- 203 (535)
++...+. | +. +..+++-..+++ -+-+|+.||+|.+...
T Consensus 218 --vqk~ige------g----------sr-------mvrelfvmareh---------------apsiifmdeidsigs~r~ 257 (404)
T KOG0728|consen 218 --VQKYIGE------G----------SR-------MVRELFVMAREH---------------APSIIFMDEIDSIGSSRV 257 (404)
T ss_pred --HHHHhhh------h----------HH-------HHHHHHHHHHhc---------------CCceEeeecccccccccc
Confidence 2233221 1 11 122222222322 3568899999999421
Q ss_pred cC--------CCChHHHHHccccccCCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 204 DK--------SSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 204 d~--------~~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+. ..++|..|..|.-+-...|+.||..+|.. .+.-+-+.| +....|.|||.+.+.-.+||.-+
T Consensus 258 e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpg-ridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 258 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPG-RIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred cCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCC-cccccccCCCCCHHHHHHHHHHh
Confidence 11 12455666666332223589999999875 333333454 23358999999999888888643
No 96
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=8.3e-08 Score=105.88 Aligned_cols=207 Identities=17% Similarity=0.233 Sum_probs=118.6
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l~ 124 (535)
-+|..++++. |=+.-+..|...+... ..++ +++|||+|+|||++++.+++.+... .....|.+|.+.+.+-
T Consensus 10 yRP~~f~dii----Gqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 10 RRPRDFNSLE----GQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred hCCCCHHHcc----CcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 3577777555 4488888888888662 4555 7799999999999999999998642 1122477776654322
Q ss_pred HHHHHHHhhcccc--ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 125 ESILNQLLLHKKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 125 ~~Il~~L~~~~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
.. ...+ ..+|. ....+.+ ++++.+.+... ...++.-|+||||+|.|..
T Consensus 84 ~~-------~~~dv~~idga----s~~~vdd----Ir~l~e~~~~~---------------p~~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 84 ND-------NSLDVIEIDGA----SNTSVQD----VRQIKEEIMFP---------------PASSRYRVYIIDEVHMLSN 133 (563)
T ss_pred cC-------CCCCeEEecCc----ccCCHHH----HHHHHHHHHhc---------------hhcCCCEEEEEEChhhcCH
Confidence 10 0000 00111 1112333 33333322110 1133556888999999953
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHH
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLD 279 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~ 279 (535)
..+.+|++.-|..+ +++.+||+++.+ +..+.+|+ ..+.|.+++.+++.++|.......++ .+=.
T Consensus 134 -----~a~naLLK~LEepp-~~~vfI~~tte~~kL~~tI~SRc-----~~~~f~~l~~~el~~~L~~i~~~egi--~id~ 200 (563)
T PRK06647 134 -----SAFNALLKTIEEPP-PYIVFIFATTEVHKLPATIKSRC-----QHFNFRLLSLEKIYNMLKKVCLEDQI--KYED 200 (563)
T ss_pred -----HHHHHHHHhhccCC-CCEEEEEecCChHHhHHHHHHhc-----eEEEecCCCHHHHHHHHHHHHHHcCC--CCCH
Confidence 34677777766543 567888877553 22233343 57999999999999999754321111 0111
Q ss_pred hhhhcccc-ccccHHHHHHHHHHhh
Q 009415 280 IVLRPFCR-ITKRVDELSTAFSLLF 303 (535)
Q Consensus 280 ~vl~~~~~-~~rdl~eL~~~~~~L~ 303 (535)
..+..+.. ...|+..+...+.++.
T Consensus 201 eAl~lLa~~s~GdlR~alslLdkli 225 (563)
T PRK06647 201 EALKWIAYKSTGSVRDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22222222 2346666666666653
No 97
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.72 E-value=1.3e-07 Score=95.81 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=78.3
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHH
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (535)
+..|++++|||||||||++++.+...-. +.++.+++....+ .|
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t--------------------------------~d-- 205 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT--------------------------------ND-- 205 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch--------------------------------HH--
Confidence 4678999999999999999999997764 3355555432221 12
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC-
Q 009415 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS- 234 (535)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~- 234 (535)
++++++.-.+.. .-.++..||+|||+++.-... +++|- +- ..+-.++||+.+.
T Consensus 206 --vR~ife~aq~~~--------------~l~krkTilFiDEiHRFNksQ--QD~fL-----P~---VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 206 --VRDIFEQAQNEK--------------SLTKRKTILFIDEIHRFNKSQ--QDTFL-----PH---VENGDITLIGATTE 259 (554)
T ss_pred --HHHHHHHHHHHH--------------hhhcceeEEEeHHhhhhhhhh--hhccc-----ce---eccCceEEEecccC
Confidence 233333211100 114477899999999996422 34331 11 1234566776554
Q ss_pred ccccccCCC-CCCCeeEecCCCCHHHHHHHHhh
Q 009415 235 PDTYHSNTG-YVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 235 ~~~f~~~~g-~~~p~~I~FppYt~~el~~IL~~ 266 (535)
-+.|.-+.. ...+.++.+.+.+.+++..||.+
T Consensus 260 NPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 260 NPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred CCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 224432222 12226889999999999999987
No 98
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.2e-07 Score=101.61 Aligned_cols=211 Identities=17% Similarity=0.206 Sum_probs=124.6
Q ss_pred hcCCChHHHHHHHHHHHhcc----CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 58 SRFPGRRVQILELLRLLGTL----NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~----~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
..++|=++-=+.+..+|.-. .-.+|-+.+.||||+||||+.+.+++.++.+|+.+..-..... ..+.|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE--------AEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE--------AEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH--------HHhcc
Confidence 45666666666666666432 1245678899999999999999999999999999986444322 23444
Q ss_pred ccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc-c--cCCCChH
Q 009415 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE-W--DKSSSIL 210 (535)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~-~--d~~~~lL 210 (535)
|+.. .-| .+. .++++. ++.. .... .|++|||+|++.. + |..+.+|
T Consensus 395 HRRT-YIG--------amP------GrIiQ~----mkka------------~~~N-Pv~LLDEIDKm~ss~rGDPaSALL 442 (782)
T COG0466 395 HRRT-YIG--------AMP------GKIIQG----MKKA------------GVKN-PVFLLDEIDKMGSSFRGDPASALL 442 (782)
T ss_pred cccc-ccc--------cCC------hHHHHH----HHHh------------CCcC-CeEEeechhhccCCCCCChHHHHH
Confidence 4321 001 010 012322 2211 1223 4666999999952 1 1122333
Q ss_pred HHHHccccc------------cCCCcEEEEEEeCC---CccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChh---
Q 009415 211 PFLFGLSDI------------LKMPEVGMIFISST---SPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQK--- 272 (535)
Q Consensus 211 ~~L~rL~E~------------~~~~~l~vI~Is~~---~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~--- 272 (535)
..|- +|. ..+.+|-+|..+|. .|..++.|+ ..|.++-||.+|-.+|-.+...+..
T Consensus 443 EVLD--PEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM-----EiI~lsgYt~~EKl~IAk~~LiPk~~~~ 515 (782)
T COG0466 443 EVLD--PEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM-----EVIRLSGYTEDEKLEIAKRHLIPKQLKE 515 (782)
T ss_pred hhcC--HhhcCchhhccccCccchhheEEEeecCccccCChHHhcce-----eeeeecCCChHHHHHHHHHhcchHHHHH
Confidence 3221 111 11344555555655 377788877 6899999999999999887654322
Q ss_pred --hhh---HHHHh-hhhcccccccc--HHHHHHHHHHhhhhhhhhhccCCC
Q 009415 273 --LYS---SFLDI-VLRPFCRITKR--VDELSTAFSLLFKRYCEPLSDLGV 315 (535)
Q Consensus 273 --l~~---~f~~~-vl~~~~~~~rd--l~eL~~~~~~L~~~y~~Pv~~~~~ 315 (535)
+-. .|-+. +.+.+..|||. +..|...+.++..++..-+..+..
T Consensus 516 ~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~ 566 (782)
T COG0466 516 HGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKE 566 (782)
T ss_pred cCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 211 12222 33444567874 677887777777777766655443
No 99
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=8.2e-08 Score=106.65 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=105.3
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE----------EEecc
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV----------YTSCL 115 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~----------yVnc~ 115 (535)
+.+|..++++ .|-+.-+..|.+.+.. +..++ ++++||+|+|||++++.+.+.+..... .-.|.
T Consensus 9 kyRP~~f~ei----vGQe~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 9 KYRPSKFADI----TAQEHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred HHCCCCHHHh----cCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 3467777744 4668888888888765 34566 779999999999999999999875321 12577
Q ss_pred ccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEe
Q 009415 116 SCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFD 195 (535)
Q Consensus 116 ~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLD 195 (535)
.|.+.+.+-...--.+. ..+| .....++ .++.+++.+... .-.++.-|+|||
T Consensus 83 ~C~sC~~~~~g~~~n~~-----~~d~----~s~~~vd----~Ir~l~e~~~~~---------------P~~~~~KVvIId 134 (620)
T PRK14954 83 ECESCRDFDAGTSLNIS-----EFDA----ASNNSVD----DIRQLRENVRYG---------------PQKGRYRVYIID 134 (620)
T ss_pred cCHHHHHHhccCCCCeE-----Eecc----cccCCHH----HHHHHHHHHHhh---------------hhcCCCEEEEEe
Confidence 77665543221000000 0011 0111222 333344332110 012345578899
Q ss_pred CCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 196 NFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 196 e~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
|+|.|.. .-...|++.-|..+ +..++||+++.. .+++..+.. ....|.|.+++.+++...|..
T Consensus 135 Ead~Lt~-----~a~naLLK~LEePp-~~tv~IL~t~~~-~kLl~TI~S-Rc~~vef~~l~~~ei~~~L~~ 197 (620)
T PRK14954 135 EVHMLST-----AAFNAFLKTLEEPP-PHAIFIFATTEL-HKIPATIAS-RCQRFNFKRIPLDEIQSQLQM 197 (620)
T ss_pred ChhhcCH-----HHHHHHHHHHhCCC-CCeEEEEEeCCh-hhhhHHHHh-hceEEecCCCCHHHHHHHHHH
Confidence 9999953 23456666556543 467788888553 333321111 116899999999999988875
No 100
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=6.3e-08 Score=107.86 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=102.6
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE---EEeccccCCHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV---YTSCLSCYSPRI 122 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~---yVnc~~~~s~r~ 122 (535)
.-+|..+++ +.|-+.-+..|.+.+... ..++ +++|||+|+|||++++.+++.+..... --.|..|.+.+.
T Consensus 9 kyRP~~~~e----iiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 9 KWRSQTFAE----LVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred HhCCCCHHH----hcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 346777774 446688888888877652 3455 689999999999999999999864221 124555554332
Q ss_pred HHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
+ .+....+.- ..++ .......+ ++++++.+... ...+..-||||||+|.|..
T Consensus 83 i----~~~~~~d~~-~i~~----~~~~~vd~----ir~ii~~~~~~---------------p~~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 83 I----AEGSAVDVI-EMDA----ASHTSVDD----AREIIERVQFR---------------PALARYKVYIIDEVHMLST 134 (585)
T ss_pred H----hcCCCCeEE-EEec----cccCCHHH----HHHHHHHHhhC---------------cccCCeEEEEEeChHhCCH
Confidence 2 211110000 0000 01112222 33333321110 0123567888999999853
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+-+..|++.-|..+ ++..+|++++.. +.++....+ ....+.|++++.+++.++|...
T Consensus 135 -----~a~naLLk~LEepp-~~tv~Il~t~~~-~kll~tI~S-R~~~i~f~~l~~~el~~~L~~~ 191 (585)
T PRK14950 135 -----AAFNALLKTLEEPP-PHAIFILATTEV-HKVPATILS-RCQRFDFHRHSVADMAAHLRKI 191 (585)
T ss_pred -----HHHHHHHHHHhcCC-CCeEEEEEeCCh-hhhhHHHHh-ccceeeCCCCCHHHHHHHHHHH
Confidence 34566666656543 467777777553 233221111 1158999999999999998754
No 101
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.70 E-value=2.3e-07 Score=88.22 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=87.1
Q ss_pred HHHHHHhccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCC
Q 009415 69 ELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSA 145 (535)
Q Consensus 69 ~L~~ll~~~~~~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~ 145 (535)
.|.+.+.. ...+ .+++|||+|+|||++++.+.+.+... .--..|..|.+.+.+-. +.-++ ...+...
T Consensus 3 ~l~~~i~~--~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~-------~~~~d-~~~~~~~ 72 (188)
T TIGR00678 3 QLKRALEK--GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEA-------GNHPD-LHRLEPE 72 (188)
T ss_pred HHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-------CCCCc-EEEeccc
Confidence 34444443 2344 48899999999999999999987422 11112434433221110 00000 0000000
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcE
Q 009415 146 KRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEV 225 (535)
Q Consensus 146 ~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l 225 (535)
...... +.++.+++.+... ...+...||||||+|++.. +....|+..-|..+ ++.
T Consensus 73 ~~~~~~----~~i~~i~~~~~~~---------------~~~~~~kviiide~~~l~~-----~~~~~Ll~~le~~~-~~~ 127 (188)
T TIGR00678 73 GQSIKV----DQVRELVEFLSRT---------------PQESGRRVVIIEDAERMNE-----AAANALLKTLEEPP-PNT 127 (188)
T ss_pred cCcCCH----HHHHHHHHHHccC---------------cccCCeEEEEEechhhhCH-----HHHHHHHHHhcCCC-CCe
Confidence 000112 2233333322110 1134567888999999953 22344555445543 578
Q ss_pred EEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 226 GMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 226 ~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.+||+++.. ..+.....+ ....+.|+|++.+|+.++|...
T Consensus 128 ~~il~~~~~-~~l~~~i~s-r~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 128 LFILITPSP-EKLLPTIRS-RCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EEEEEECCh-HhChHHHHh-hcEEeeCCCCCHHHHHHHHHHc
Confidence 888888754 333322211 1168999999999999999875
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.70 E-value=2.4e-07 Score=90.84 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~ 116 (535)
...+++|+|++|||||++++++.+++ +..+.|++|.+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 45679999999999999999999875 46788888744
No 103
>PRK09087 hypothetical protein; Validated
Probab=98.70 E-value=1.1e-07 Score=93.40 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=62.3
Q ss_pred EEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCcc-------ccccCCCCCCCeeEecCCCCHHHHHHH
Q 009415 191 YLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPD-------TYHSNTGYVAPIHVYFPECTEDDLRQI 263 (535)
Q Consensus 191 vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~-------~f~~~~g~~~p~~I~FppYt~~el~~I 263 (535)
+|+||++|.+.. + ...++..+..+.+. +..+|+.++..|. ++.+|..+. ..+.+.+++.+++.+|
T Consensus 90 ~l~iDDi~~~~~-~-~~~lf~l~n~~~~~----g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~i 161 (226)
T PRK09087 90 PVLIEDIDAGGF-D-ETGLFHLINSVRQA----GTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQV 161 (226)
T ss_pred eEEEECCCCCCC-C-HHHHHHHHHHHHhC----CCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHH
Confidence 677899998742 1 24555555555554 3456666665433 344455433 6899999999999999
Q ss_pred HhhcCCChhhhhHHHHhhhhcc-ccccccHHHHHHHHHHhh
Q 009415 264 FMRNQANQKLYSSFLDIVLRPF-CRITKRVDELSTAFSLLF 303 (535)
Q Consensus 264 L~~~~~~~~l~~~f~~~vl~~~-~~~~rdl~eL~~~~~~L~ 303 (535)
|.+.....++ ..=..+++.+ .+..+++..+..++..|.
T Consensus 162 L~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 162 IFKLFADRQL--YVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9865422111 0012233322 245678888888887774
No 104
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.6e-08 Score=104.19 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=91.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVR 159 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~ 159 (535)
++.-|++|||||||||++++++.++-+..|++|.+.+..|.. .|- + ...++
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~------------------vGe-------S----Er~ir 517 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY------------------VGE-------S----ERAIR 517 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh------------------cCc-------h----HHHHH
Confidence 344599999999999999999999999999999998765542 111 1 12234
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc-C-----CCChHHHHHcccc-ccCCCcEEEEEEeC
Q 009415 160 EALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-K-----SSSILPFLFGLSD-ILKMPEVGMIFISS 232 (535)
Q Consensus 160 ~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d-~-----~~~lL~~L~rL~E-~~~~~~l~vI~Is~ 232 (535)
+++++ .+ ...+.||+|||+|.+.... + ...+|..|++-.+ +-...+|-||.-+|
T Consensus 518 ~iF~k----AR---------------~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATN 578 (693)
T KOG0730|consen 518 EVFRK----AR---------------QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATN 578 (693)
T ss_pred HHHHH----Hh---------------hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccC
Confidence 44432 21 2246899999999995211 1 2346666654222 11123566666666
Q ss_pred CC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCC
Q 009415 233 TS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA 269 (535)
Q Consensus 233 ~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~ 269 (535)
.+ .+.-+-+.|-+. ..||+|+.+.+-=.+||.....
T Consensus 579 Rpd~ID~ALlRPGRlD-~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 579 RPDMIDPALLRPGRLD-RIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred ChhhcCHHHcCCcccc-eeEeecCccHHHHHHHHHHHHh
Confidence 64 222233444222 6999999999999999986643
No 105
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.7e-08 Score=98.40 Aligned_cols=132 Identities=20% Similarity=0.299 Sum_probs=78.7
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCC---------eEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHH
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRP---------FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~---------~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (535)
+++|||||||||++.++++++|.++ .+.|||-. ||.+ . +++-
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs------LFSK----W-------------------FsES 230 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS------LFSK----W-------------------FSES 230 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH------HHHH----H-------------------Hhhh
Confidence 7899999999999999999999743 23344422 2221 1 1111
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc-----------ccC---CCChHHHHHcccccc
Q 009415 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE-----------WDK---SSSILPFLFGLSDIL 220 (535)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~-----------~d~---~~~lL~~L~rL~E~~ 220 (535)
-....++++++.+ .. ...+..+.|.|||++.|.- .|+ -+++|..+-||...
T Consensus 231 gKlV~kmF~kI~E----Lv----------~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~- 295 (423)
T KOG0744|consen 231 GKLVAKMFQKIQE----LV----------EDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY- 295 (423)
T ss_pred hhHHHHHHHHHHH----HH----------hCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-
Confidence 1112222222211 11 1255678888999999831 011 02455555555543
Q ss_pred CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 221 KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 221 ~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
+|+-+...||.. ...|..|.. +..+.-|.+..-+.+|+.
T Consensus 296 --~NvliL~TSNl~~siD~AfVDRAD----i~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 296 --PNVLILATSNLTDSIDVAFVDRAD----IVFYVGPPTAEAIYEILK 337 (423)
T ss_pred --CCEEEEeccchHHHHHHHhhhHhh----heeecCCccHHHHHHHHH
Confidence 677666667653 335666654 577788889999999987
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=98.68 E-value=3e-07 Score=90.77 Aligned_cols=157 Identities=15% Similarity=0.227 Sum_probs=92.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (535)
.++++|||++|+|||+++++++.++ +..++|+++.+... .
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~------~------------------------------- 87 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD------R------------------------------- 87 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh------h-------------------------------
Confidence 3579999999999999999998654 56788888643210 0
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-CCChHHHHHccccccCCCcEEEEEEeCCCcc
Q 009415 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-SSSILPFLFGLSDILKMPEVGMIFISSTSPD 236 (535)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~ 236 (535)
....++.+ . ..-+||||+++.+..... ...++..+-++.+. +..+|+.++.+|.
T Consensus 88 ~~~~~~~~-~--------------------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~----g~~ilits~~~p~ 142 (234)
T PRK05642 88 GPELLDNL-E--------------------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDS----GRRLLLAASKSPR 142 (234)
T ss_pred hHHHHHhh-h--------------------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhc----CCEEEEeCCCCHH
Confidence 00112111 0 123788999998842111 12344444444443 3345555555443
Q ss_pred c-------cccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccc-cccccHHHHHHHHHHhh
Q 009415 237 T-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC-RITKRVDELSTAFSLLF 303 (535)
Q Consensus 237 ~-------f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~-~~~rdl~eL~~~~~~L~ 303 (535)
. +.+|.++. ..+.+.+.+.++..+||..+.....+ ..=+.+++-+. +..||+..|..++..|.
T Consensus 143 ~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 143 ELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLRALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred HcCccCccHHHHHhcC--eeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3 23344332 57889999999999999854321111 00133444333 46678999998888874
No 107
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.67 E-value=1.2e-07 Score=104.41 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=47.3
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccc
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLS 116 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~ 116 (535)
.+|..++ .+.|.+..+..|...+.. ....+++|+||||||||++++.+.+.. +.+++.+||..
T Consensus 59 ~rp~~f~----~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 59 TRPKSFD----EIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred hCcCCHH----HeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 3555666 567788888888876533 235679999999999999999998642 25688899864
No 108
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.67 E-value=2e-07 Score=101.02 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=83.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
..+++|||||||||.+++++..+++.++..++|....+ ... +++- ..++++
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~----------~~v---------------Gese----~~l~~~ 310 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG----------GIV---------------GESE----SRMRQM 310 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc----------ccc---------------ChHH----HHHHHH
Confidence 45999999999999999999999999999999743221 111 1111 123333
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc-cC------CCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-DK------SSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~-d~------~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
+... + ...+.||+|||+|.+... +. ...++..|+.+.+.. ...+-||..+|.+
T Consensus 311 f~~A----~---------------~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-~~~V~vIaTTN~~ 370 (489)
T CHL00195 311 IRIA----E---------------ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-KSPVFVVATANNI 370 (489)
T ss_pred HHHH----H---------------hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-CCceEEEEecCCh
Confidence 3321 1 225789999999988431 10 122454554432221 2346666677765
Q ss_pred ---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 235 ---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 235 ---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
++.++ |.|-+. ..|+|+.++.++-.+|+...
T Consensus 371 ~~Ld~all-R~GRFD-~~i~v~lP~~~eR~~Il~~~ 404 (489)
T CHL00195 371 DLLPLEIL-RKGRFD-EIFFLDLPSLEEREKIFKIH 404 (489)
T ss_pred hhCCHHHh-CCCcCC-eEEEeCCcCHHHHHHHHHHH
Confidence 33443 333222 58899999999999998744
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=4.4e-07 Score=95.53 Aligned_cols=200 Identities=14% Similarity=0.140 Sum_probs=106.0
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
+|..++ .+.|.+..+..|.+.+... ..++++++|||+|+|||++++.+.+.+........|..+. . .++
T Consensus 12 rP~~~~----~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~-~-~~~---- 80 (367)
T PRK14970 12 RPQTFD----DVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS-F-NIF---- 80 (367)
T ss_pred CCCcHH----hcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-c-ceE----
Confidence 566666 4567788999998888652 2233588999999999999999998875321111111000 0 000
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCC
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS 208 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~ 208 (535)
.+ ++. ......+ ++++++.... ....+..-||+|||+|.+.. .
T Consensus 81 -~l--------~~~----~~~~~~~----i~~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~-----~ 123 (367)
T PRK14970 81 -EL--------DAA----SNNSVDD----IRNLIDQVRI---------------PPQTGKYKIYIIDEVHMLSS-----A 123 (367)
T ss_pred -Ee--------ccc----cCCCHHH----HHHHHHHHhh---------------ccccCCcEEEEEeChhhcCH-----H
Confidence 00 000 0011222 2223322100 00123456888999998853 2
Q ss_pred hHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChh--hhhHHHHhhhhccc
Q 009415 209 ILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQK--LYSSFLDIVLRPFC 286 (535)
Q Consensus 209 lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~--l~~~f~~~vl~~~~ 286 (535)
.+..|++.-|..+ .+..+|++++.. ..+...... ....+.|++++.+++..+|.......+ +-+. +++.+.
T Consensus 124 ~~~~ll~~le~~~-~~~~~Il~~~~~-~kl~~~l~s-r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~----al~~l~ 196 (367)
T PRK14970 124 AFNAFLKTLEEPP-AHAIFILATTEK-HKIIPTILS-RCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDD----ALHIIA 196 (367)
T ss_pred HHHHHHHHHhCCC-CceEEEEEeCCc-ccCCHHHHh-cceeEecCCccHHHHHHHHHHHHHHcCCCCCHH----HHHHHH
Confidence 3455555334322 345666666542 333321111 114789999999999999985332212 1222 222222
Q ss_pred ccc-ccHHHHHHHHHHhh
Q 009415 287 RIT-KRVDELSTAFSLLF 303 (535)
Q Consensus 287 ~~~-rdl~eL~~~~~~L~ 303 (535)
..+ .|+..+...+.++.
T Consensus 197 ~~~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 197 QKADGALRDALSIFDRVV 214 (367)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 223 47777777777664
No 110
>PRK06620 hypothetical protein; Validated
Probab=98.66 E-value=2e-07 Score=90.78 Aligned_cols=102 Identities=8% Similarity=0.167 Sum_probs=60.9
Q ss_pred EEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccc-----cccCCCCCCCeeEecCCCCHHHHHHHH
Q 009415 190 IYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDT-----YHSNTGYVAPIHVYFPECTEDDLRQIF 264 (535)
Q Consensus 190 ~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~-----f~~~~g~~~p~~I~FppYt~~el~~IL 264 (535)
.+|+|||+|.+.+ ..+++.+.++.|. .-.+|+.+..+|.. +.+|..+. ..+.+.+++.+++..|+
T Consensus 87 d~lliDdi~~~~~----~~lf~l~N~~~e~----g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l 156 (214)
T PRK06620 87 NAFIIEDIENWQE----PALLHIFNIINEK----QKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILI 156 (214)
T ss_pred CEEEEeccccchH----HHHHHHHHHHHhc----CCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHH
Confidence 4788999996632 3566666666665 22344445444433 33455433 58999999999999998
Q ss_pred hhcCCChhhhhHHHHhhhhccc-cccccHHHHHHHHHHhh
Q 009415 265 MRNQANQKLYSSFLDIVLRPFC-RITKRVDELSTAFSLLF 303 (535)
Q Consensus 265 ~~~~~~~~l~~~f~~~vl~~~~-~~~rdl~eL~~~~~~L~ 303 (535)
.+.....++ ..=..+++-+. +..+|+..+..++..|.
T Consensus 157 ~k~~~~~~l--~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 157 FKHFSISSV--TISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 765321111 00122333333 35678888888887764
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.66 E-value=1.2e-07 Score=109.78 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=95.3
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~----------~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.||++||+++...|... ..++++++||||||||++++.++..+. ..+..+|+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l---------- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL---------- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH----------
Confidence 46899999999999998663 345789999999999999999998752 23334443111
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC--
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-- 205 (535)
+.+ . ....+|...++.+++.+. ....+||+|||+|.|..-..
T Consensus 247 ---~ag--------~------~~~ge~e~rl~~i~~~~~-------------------~~~~~ILfiDEih~l~~~g~~~ 290 (821)
T CHL00095 247 ---LAG--------T------KYRGEFEERLKRIFDEIQ-------------------ENNNIILVIDEVHTLIGAGAAE 290 (821)
T ss_pred ---hcc--------C------CCccHHHHHHHHHHHHHH-------------------hcCCeEEEEecHHHHhcCCCCC
Confidence 111 0 122356666777776532 12468999999999963210
Q ss_pred CCChHHHHHccccccCCCcEEEEEEeCCC-ccccccCCC--CCCCeeEecCCCCHHHHHHHHhh
Q 009415 206 SSSILPFLFGLSDILKMPEVGMIFISSTS-PDTYHSNTG--YVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~~~~~l~vI~Is~~~-~~~f~~~~g--~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+..-...+++ +.+.. ..+.+|..++.. +..+...-+ ...-..|.+++++.+|+..||..
T Consensus 291 g~~~~a~lLk-p~l~r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 291 GAIDAANILK-PALAR-GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred CcccHHHHhH-HHHhC-CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 1111223332 22221 357777766543 111111100 01114678899999999999874
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=1.3e-07 Score=101.89 Aligned_cols=210 Identities=12% Similarity=0.123 Sum_probs=113.9
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEE---EeccccCCHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVY---TSCLSCYSPRIL 123 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~y---Vnc~~~~s~r~l 123 (535)
-+|..++ .+.|.+.-+..|.+.+... ..++ +++|||+|+|||++++.+++.+...... -.|..|.+.+.+
T Consensus 11 yRP~~~~----diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 11 YRPQTFS----EILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred hCCCCHH----HhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 3566676 4556688888888888652 3455 7799999999999999999988532111 124444322211
Q ss_pred HHHHHHHHhhcccc--ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccc
Q 009415 124 FESILNQLLLHKKN--AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR 201 (535)
Q Consensus 124 ~~~Il~~L~~~~~~--~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~ 201 (535)
=. +...+ ..+|. ....+.+ ++.+.+.+ ... ...+..-||||||+|.+.
T Consensus 85 ~~-------~~~~d~~~i~g~----~~~gid~----ir~i~~~l-~~~--------------~~~~~~kvvIIdead~lt 134 (451)
T PRK06305 85 SS-------GTSLDVLEIDGA----SHRGIED----IRQINETV-LFT--------------PSKSRYKIYIIDEVHMLT 134 (451)
T ss_pred hc-------CCCCceEEeecc----ccCCHHH----HHHHHHHH-Hhh--------------hhcCCCEEEEEecHHhhC
Confidence 00 00000 00111 0011222 22222211 100 012345688899999995
Q ss_pred cccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhh
Q 009415 202 EWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIV 281 (535)
Q Consensus 202 ~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~v 281 (535)
. +....|++.-|..+ +++++|++++.. ..+....-+ ....+.|++++.+|+.++|.......+. .+=...
T Consensus 135 ~-----~~~n~LLk~lEep~-~~~~~Il~t~~~-~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~a 204 (451)
T PRK06305 135 K-----EAFNSLLKTLEEPP-QHVKFFLATTEI-HKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREA 204 (451)
T ss_pred H-----HHHHHHHHHhhcCC-CCceEEEEeCCh-HhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHH
Confidence 3 34667777766643 467888888653 233321111 1168999999999999998753211110 011112
Q ss_pred hhcccccc-ccHHHHHHHHHHhh
Q 009415 282 LRPFCRIT-KRVDELSTAFSLLF 303 (535)
Q Consensus 282 l~~~~~~~-rdl~eL~~~~~~L~ 303 (535)
+..+...+ .|+..+...+..++
T Consensus 205 l~~L~~~s~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 205 LLPIARAAQGSLRDAESLYDYVV 227 (451)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 22233333 46777666666654
No 113
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.4e-07 Score=105.12 Aligned_cols=174 Identities=17% Similarity=0.162 Sum_probs=104.1
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeE----EEeccccCCHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFV----YTSCLSCYSPRIL 123 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~----yVnc~~~~s~r~l 123 (535)
-+|..++ .+.|.+.-...|...+... .-.+.++++||+|||||++++.+++.+..... .-.|..|...+.
T Consensus 10 yRP~~f~----~liGq~~i~~~L~~~l~~~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~- 83 (620)
T PRK14948 10 YRPQRFD----ELVGQEAIATTLKNALISN-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA- 83 (620)
T ss_pred hCCCcHh----hccChHHHHHHHHHHHHcC-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH-
Confidence 3565666 5556688888888888753 12346889999999999999999999864321 124665543332
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
+......+.- ..+ ...... ++.++++++..... ...++.-||||||+|.|..
T Consensus 84 ---i~~g~h~D~~-ei~----~~~~~~----vd~IReii~~a~~~---------------p~~~~~KViIIDEad~Lt~- 135 (620)
T PRK14948 84 ---IAAGNALDVI-EID----AASNTG----VDNIRELIERAQFA---------------PVQARWKVYVIDECHMLST- 135 (620)
T ss_pred ---HhcCCCccEE-EEe----ccccCC----HHHHHHHHHHHhhC---------------hhcCCceEEEEECccccCH-
Confidence 2211110000 000 001112 23344444332110 0123556888999999953
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCCcccc----ccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY----HSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f----~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+-..+|++.-|..+ .++.+|++++.+ .++ .+|+ ..+.|++.+.+++.+.|..
T Consensus 136 ----~a~naLLK~LEePp-~~tvfIL~t~~~-~~llpTIrSRc-----~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 136 ----AAFNALLKTLEEPP-PRVVFVLATTDP-QRVLPTIISRC-----QRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred ----HHHHHHHHHHhcCC-cCeEEEEEeCCh-hhhhHHHHhhe-----eEEEecCCCHHHHHHHHHH
Confidence 34667777667643 467778888763 333 3344 6899999999999988764
No 114
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.64 E-value=2.7e-07 Score=105.50 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=101.3
Q ss_pred hcCCChHHHHHHHHHHHhcc----CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 58 SRFPGRRVQILELLRLLGTL----NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~----~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
+.++|-+..-+.+..++... ...++.++++||||+|||++++.+.+.++.+++.+++....... .+.+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~--------~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEA--------EIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHH--------Hhcc
Confidence 45899888888888777532 12456799999999999999999999999999888865543332 2222
Q ss_pred ccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
+... ..| ..... +.+.+.. . ....+ ||+|||+|++... ...+...+|
T Consensus 394 ~~~~-~~g-------~~~G~----~~~~l~~---~----------------~~~~~-villDEidk~~~~-~~g~~~~aL 440 (784)
T PRK10787 394 HRRT-YIG-------SMPGK----LIQKMAK---V----------------GVKNP-LFLLDEIDKMSSD-MRGDPASAL 440 (784)
T ss_pred chhc-cCC-------CCCcH----HHHHHHh---c----------------CCCCC-EEEEEChhhcccc-cCCCHHHHH
Confidence 2110 000 01111 1111211 0 11123 6789999999642 123345555
Q ss_pred Hccccc--------------cCCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 214 FGLSDI--------------LKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 214 ~rL~E~--------------~~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+.+.+- ....++.+|..+|.. ++.|+.|+ ..|.|.+|+.+|+.+|..+..
T Consensus 441 levld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~-----~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 441 LEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRM-----EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcce-----eeeecCCCCHHHHHHHHHHhh
Confidence 554321 012455555555543 56677766 478999999999999987654
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.63 E-value=2.9e-07 Score=105.30 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=51.3
Q ss_pred HHhhcCCChHHHHHHHHHHHhcc---C-C---CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009415 55 DLLSRFPGRRVQILELLRLLGTL---N-S---SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~---~-~---~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~ 118 (535)
.+.+++.|-+..++.|...+... . . +..+++++||+|||||.+++.+.+.++.+++.++|.++.
T Consensus 451 ~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 451 NLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred HHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 45677888899999988887642 1 1 223578999999999999999999999999999986643
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.61 E-value=2.8e-07 Score=104.78 Aligned_cols=167 Identities=14% Similarity=0.222 Sum_probs=102.6
Q ss_pred HhhcCCChHHHHHHHHHHHhcc-------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 56 LLSRFPGRRVQILELLRLLGTL-------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 56 l~~~~p~Re~qi~~L~~ll~~~-------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
|..++.|-++.+..|...+... ..+..+++++||+|||||.+++.+.+.++.+++.+||.+..... ..
T Consensus 456 L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~-----~~ 530 (758)
T PRK11034 456 LKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH-----TV 530 (758)
T ss_pred hcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccc-----cH
Confidence 4556788899999998888642 11234689999999999999999999999999999997754322 12
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCC
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS 208 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~ 208 (535)
..|.+.. .||... +... .|.+.+ . ..+.-||+|||+|++. ++
T Consensus 531 ~~LiG~~----~gyvg~---~~~g----~L~~~v----~------------------~~p~sVlllDEieka~-----~~ 572 (758)
T PRK11034 531 SRLIGAP----PGYVGF---DQGG----LLTDAV----I------------------KHPHAVLLLDEIEKAH-----PD 572 (758)
T ss_pred HHHcCCC----CCcccc---cccc----hHHHHH----H------------------hCCCcEEEeccHhhhh-----HH
Confidence 3444421 122100 0000 111111 1 1234688999999995 45
Q ss_pred hHHHHHccccc---c-------CCCcEEEEEEeCCCccc------------------------cccCCCCCCCeeEecCC
Q 009415 209 ILPFLFGLSDI---L-------KMPEVGMIFISSTSPDT------------------------YHSNTGYVAPIHVYFPE 254 (535)
Q Consensus 209 lL~~L~rL~E~---~-------~~~~l~vI~Is~~~~~~------------------------f~~~~g~~~p~~I~Fpp 254 (535)
++..|+++-+- . ...|..+|+.||...+. |.+-.-.+.+..|.|+|
T Consensus 573 v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~ 652 (758)
T PRK11034 573 VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDH 652 (758)
T ss_pred HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCC
Confidence 66666655331 1 12355577777743111 10100123346899999
Q ss_pred CCHHHHHHHHh
Q 009415 255 CTEDDLRQIFM 265 (535)
Q Consensus 255 Yt~~el~~IL~ 265 (535)
++++++.+|+.
T Consensus 653 L~~~~l~~I~~ 663 (758)
T PRK11034 653 LSTDVIHQVVD 663 (758)
T ss_pred CCHHHHHHHHH
Confidence 99999999986
No 117
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.59 E-value=4.1e-07 Score=105.61 Aligned_cols=156 Identities=16% Similarity=0.185 Sum_probs=91.8
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~----------~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.||+++++++...|... ..++++++||||||||++++.++..+. .++..++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------------- 237 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------------- 237 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH-------------
Confidence 35899999999999988652 346789999999999999999998762 22333332
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc---c
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW---D 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~---d 204 (535)
..+.. |. ....+|...+..+++.+.. .+.+.||+|||+|.|..- +
T Consensus 238 -~~l~a-------~~------~~~g~~e~~l~~~l~~~~~------------------~~~~~ILfIDEih~l~~~g~~~ 285 (852)
T TIGR03346 238 -GALIA-------GA------KYRGEFEERLKAVLNEVTK------------------SEGQIILFIDELHTLVGAGKAE 285 (852)
T ss_pred -HHHhh-------cc------hhhhhHHHHHHHHHHHHHh------------------cCCCeEEEeccHHHhhcCCCCc
Confidence 11110 00 0112445555556554311 235789999999999631 1
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCCcccc---cc-CC---CCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY---HS-NT---GYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f---~~-~~---g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+..+.. .+++- .+. ...+.+|..++.. .| +. .. .-+ ..|.+++.+.++..+||...
T Consensus 286 ~~~d~~-~~Lk~-~l~-~g~i~~IgaTt~~--e~r~~~~~d~al~rRf--~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 286 GAMDAG-NMLKP-ALA-RGELHCIGATTLD--EYRKYIEKDAALERRF--QPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred chhHHH-HHhch-hhh-cCceEEEEeCcHH--HHHHHhhcCHHHHhcC--CEEEeCCCCHHHHHHHHHHH
Confidence 111222 22221 111 1245555555443 33 21 00 012 46888888999999999753
No 118
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.59 E-value=3.5e-07 Score=105.91 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=91.8
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.||+++++++...|... ..++++++||||||||++++.++..+ +.++..+++....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~--------- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV--------- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh---------
Confidence 36899999999999988652 34678999999999999999999887 2334444432110
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--- 204 (535)
. | .....+|..+++.+++.+.. .+.++||+|||+|.|..-.
T Consensus 247 ----a--------g------~~~~g~~e~~lk~~~~~~~~------------------~~~~~ILfIDEih~l~~~~~~~ 290 (857)
T PRK10865 247 ----A--------G------AKYRGEFEERLKGVLNDLAK------------------QEGNVILFIDELHTMVGAGKAD 290 (857)
T ss_pred ----h--------c------cchhhhhHHHHHHHHHHHHH------------------cCCCeEEEEecHHHhccCCCCc
Confidence 0 0 00123455556666654311 2357899999999996311
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCCcccc---cc-CCC-CCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY---HS-NTG-YVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f---~~-~~g-~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+..+ ...+++ +.+. +-.+.+|+.+.++.| +. ..+ ...-..|.++..+.++...||..-
T Consensus 291 ~~~d-~~~~lk-p~l~---~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 291 GAMD-AGNMLK-PALA---RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred cchh-HHHHhc-chhh---cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 1111 122221 1121 223444454444443 21 111 001136777777999999999643
No 119
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=4.3e-07 Score=95.28 Aligned_cols=187 Identities=12% Similarity=0.074 Sum_probs=104.1
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe------------EEEecc
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF------------VYTSCL 115 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~------------~yVnc~ 115 (535)
.|..++ .+.|-+.....|.+.+.. +..++ ++++||+|+||++++..+.+.+-..- ....|.
T Consensus 14 ~P~~~~----~iiGq~~~~~~L~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~ 87 (365)
T PRK07471 14 HPRETT----ALFGHAAAEAALLDAYRS--GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDP 87 (365)
T ss_pred CCCchh----hccChHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCC
Confidence 344555 556778888889888876 35666 88999999999999999999873211 011244
Q ss_pred ccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEe
Q 009415 116 SCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFD 195 (535)
Q Consensus 116 ~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLD 195 (535)
.|.+.+.+-....-.+..-.+.. ++.. .+....+. ++.++++.+.+ .. ....+.+.|||||
T Consensus 88 ~c~~c~~i~~~~HPDl~~i~~~~-~~~~-~~~~~~I~--VdqiR~l~~~~-~~--------------~~~~~~~kVviID 148 (365)
T PRK07471 88 DHPVARRIAAGAHGGLLTLERSW-NEKG-KRLRTVIT--VDEVRELISFF-GL--------------TAAEGGWRVVIVD 148 (365)
T ss_pred CChHHHHHHccCCCCeEEEeccc-cccc-cccccccc--HHHHHHHHHHh-Cc--------------CcccCCCEEEEEe
Confidence 45433322110000000000000 0000 00001111 33344443322 10 0124467789999
Q ss_pred CCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 196 NFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 196 e~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
++|.+. ..-..+|++.-|..+ ++..+|++++.+ +.+++...+ ....|.|++++.+++.++|....
T Consensus 149 ead~m~-----~~aanaLLK~LEepp-~~~~~IL~t~~~-~~llpti~S-Rc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 149 TADEMN-----ANAANALLKVLEEPP-ARSLFLLVSHAP-ARLLPTIRS-RCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred chHhcC-----HHHHHHHHHHHhcCC-CCeEEEEEECCc-hhchHHhhc-cceEEECCCCCHHHHHHHHHHhc
Confidence 999884 345567777666543 356777787765 223221111 12799999999999999998754
No 120
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.9e-07 Score=99.81 Aligned_cols=138 Identities=18% Similarity=0.172 Sum_probs=86.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
..+++|||||||||.+++++...++.+++.|.+.+..+. . +.+....++++
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk----------~-------------------vGesek~ir~~ 327 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK----------W-------------------VGESEKNIREL 327 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc----------c-------------------cchHHHHHHHH
Confidence 359999999999999999999999999999887532211 1 11111223333
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCC------ChHHHHHcccc-ccCCCcEEEEEEeCCC
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS------SILPFLFGLSD-ILKMPEVGMIFISSTS 234 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~------~lL~~L~rL~E-~~~~~~l~vI~Is~~~ 234 (535)
+ ...+ ...+.||+|||+|.+..+.... .++..|+...+ .-...++-||..+|.+
T Consensus 328 F----~~A~---------------~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p 388 (494)
T COG0464 328 F----EKAR---------------KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRP 388 (494)
T ss_pred H----HHHH---------------cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCc
Confidence 3 2211 2357899999999997543221 35555544332 2223455566666665
Q ss_pred c--cccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 235 P--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 235 ~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+ +.-+.+.|-+. ..|+||+++.++-.+|+....
T Consensus 389 ~~ld~a~lR~gRfd-~~i~v~~pd~~~r~~i~~~~~ 423 (494)
T COG0464 389 DDLDPALLRPGRFD-RLIYVPLPDLEERLEIFKIHL 423 (494)
T ss_pred cccCHhhcccCccc-eEeecCCCCHHHHHHHHHHHh
Confidence 2 11122334222 699999999999999998654
No 121
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.55 E-value=8.1e-07 Score=87.76 Aligned_cols=156 Identities=21% Similarity=0.303 Sum_probs=92.3
Q ss_pred cCCCCCHHHHhhcCCChHHHHHHHHHHHhcc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHH
Q 009415 47 GQEPISLDDLLSRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRIL 123 (535)
Q Consensus 47 ~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l 123 (535)
..+|..++ .|.|-++-..+|.-++... .....++++|||||.||||++.-+.+++++.+-.... +
T Consensus 19 ~lRP~~l~----efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsG-----p--- 86 (332)
T COG2255 19 SLRPKTLD----EFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSG-----P--- 86 (332)
T ss_pred ccCcccHH----HhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccc-----c---
Confidence 34576776 5556566666776666543 2355689999999999999999999999954433221 1
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
--+...|+.. ++.. ++ ..-|+++||+++|..
T Consensus 87 -----------------------~leK~gDlaa----iLt~----Le-----------------~~DVLFIDEIHrl~~- 117 (332)
T COG2255 87 -----------------------ALEKPGDLAA----ILTN----LE-----------------EGDVLFIDEIHRLSP- 117 (332)
T ss_pred -----------------------cccChhhHHH----HHhc----CC-----------------cCCeEEEehhhhcCh-
Confidence 1123344333 2322 11 345899999999964
Q ss_pred cCCCChHHHHHcccc---cc-----------CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 204 DKSSSILPFLFGLSD---IL-----------KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 204 d~~~~lL~~L~rL~E---~~-----------~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.-.++||.-+.=.. .. ++|..++|..+... ..++..|.| ...++.=|+.+|+.+|+.+
T Consensus 118 -~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFG----i~~rlefY~~~eL~~Iv~r 192 (332)
T COG2255 118 -AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFG----IIQRLEFYTVEELEEIVKR 192 (332)
T ss_pred -hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcC----CeeeeecCCHHHHHHHHHH
Confidence 22566654321111 00 12334444433221 233444555 3445555999999999987
Q ss_pred cC
Q 009415 267 NQ 268 (535)
Q Consensus 267 ~~ 268 (535)
..
T Consensus 193 ~a 194 (332)
T COG2255 193 SA 194 (332)
T ss_pred HH
Confidence 54
No 122
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.54 E-value=4.3e-07 Score=103.27 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=95.5
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLH 134 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~ 134 (535)
+.+.||+.+++++...|... ...+++++||||||||++++.+.... +++..+.+|.-.... +.++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~-------~~~lla- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD-------IGSLLA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc-------HHHHhc-
Confidence 46999999999999988763 34678999999999999999999764 456666666533110 111110
Q ss_pred cccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC----CCChH
Q 009415 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK----SSSIL 210 (535)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~----~~~lL 210 (535)
|. ....+|...++.+++.+. .....||+|||+|.|..-.. ..++.
T Consensus 256 ------G~------~~~Ge~e~rl~~l~~~l~-------------------~~~~~ILfIDEIh~L~g~g~~~~g~~d~~ 304 (758)
T PRK11034 256 ------GT------KYRGDFEKRFKALLKQLE-------------------QDTNSILFIDEIHTIIGAGAASGGQVDAA 304 (758)
T ss_pred ------cc------chhhhHHHHHHHHHHHHH-------------------hcCCCEEEeccHHHHhccCCCCCcHHHHH
Confidence 00 012244445555554331 11356999999999953111 11222
Q ss_pred HHHHccccccCCCcEEEEEEeCCC-ccc-------cccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 211 PFLFGLSDILKMPEVGMIFISSTS-PDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 211 ~~L~rL~E~~~~~~l~vI~Is~~~-~~~-------f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
..|.. +....++.+|..++.. +.. +.+|. ..|.+++++.+|..+||...
T Consensus 305 nlLkp---~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRF-----q~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 305 NLIKP---LLSSGKIRVIGSTTYQEFSNIFEKDRALARRF-----QKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHH---HHhCCCeEEEecCChHHHHHHhhccHHHHhhC-----cEEEeCCCCHHHHHHHHHHH
Confidence 22221 2111345555544432 111 22222 47999999999999999854
No 123
>PF05729 NACHT: NACHT domain
Probab=98.54 E-value=6.3e-07 Score=82.36 Aligned_cols=144 Identities=20% Similarity=0.305 Sum_probs=80.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC--------CC-eEEEeccccCCHH---HHHHHHHHHHhhccccccCCCCCCcCCCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS--------RP-FVYTSCLSCYSPR---ILFESILNQLLLHKKNAFNGYSSAKRCEK 150 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~--------~~-~~yVnc~~~~s~r---~l~~~Il~~L~~~~~~~~~g~~~~~r~~~ 150 (535)
.++|+|++|+|||++++.++..+. .. .+|+++.+..... .+.+.|..++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---------------- 65 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES---------------- 65 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----------------
Confidence 478999999999999999998763 12 2355555543222 3333333333211
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCC---CChHHHHHccccccCCCcEEE
Q 009415 151 PSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS---SSILPFLFGLSDILKMPEVGM 227 (535)
Q Consensus 151 ~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~---~~lL~~L~rL~E~~~~~~l~v 227 (535)
... ....+..+.. ....++||||.+|.+.+.+.. ..+...|..+-.....+++++
T Consensus 66 ~~~----~~~~~~~~~~------------------~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 123 (166)
T PF05729_consen 66 IAP----IEELLQELLE------------------KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKL 123 (166)
T ss_pred hhh----hHHHHHHHHH------------------cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeE
Confidence 000 1111211111 336789999999999752210 112223333322211357888
Q ss_pred EEEeCCC-ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 228 IFISSTS-PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 228 I~Is~~~-~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
|++++.. ...+..... ....+..++++++|+.+++.+
T Consensus 124 iit~r~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~ 161 (166)
T PF05729_consen 124 IITSRPRAFPDLRRRLK--QAQILELEPFSEEDIKQYLRK 161 (166)
T ss_pred EEEEcCChHHHHHHhcC--CCcEEEECCCCHHHHHHHHHH
Confidence 8877654 222222222 115788999999999999874
No 124
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-06 Score=94.32 Aligned_cols=136 Identities=16% Similarity=0.177 Sum_probs=78.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
.-+++|||||||||.++++++++-+..|+.|...+. ++...|.. ...++++
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL----------lNkYVGES-------------------ErAVR~v 596 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL----------LNKYVGES-------------------ERAVRQV 596 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH----------HHHHhhhH-------------------HHHHHHH
Confidence 349999999999999999999999999988876543 23332220 1123333
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc------CCCChHHHHHc-cccccCCCcEEEEEEeCCC
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD------KSSSILPFLFG-LSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d------~~~~lL~~L~r-L~E~~~~~~l~vI~Is~~~ 234 (535)
+ .+.+ ...++||+|||+|.|.... ....++..|+- |.-+-.-.+|-||..+|.+
T Consensus 597 F----qRAR---------------~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRP 657 (802)
T KOG0733|consen 597 F----QRAR---------------ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRP 657 (802)
T ss_pred H----HHhh---------------cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCC
Confidence 3 3322 3468999999999995321 11234444332 2111112346666666665
Q ss_pred --ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 235 --PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 235 --~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.+.-+-|.|-+. ..++....+.+|=.+||..
T Consensus 658 DiIDpAiLRPGRlD-k~LyV~lPn~~eR~~ILK~ 690 (802)
T KOG0733|consen 658 DIIDPAILRPGRLD-KLLYVGLPNAEERVAILKT 690 (802)
T ss_pred cccchhhcCCCccC-ceeeecCCCHHHHHHHHHH
Confidence 222222444222 3556666677777777753
No 125
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.51 E-value=6.7e-07 Score=91.56 Aligned_cols=61 Identities=21% Similarity=0.123 Sum_probs=47.1
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRIL 123 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l 123 (535)
.+..+...+..+...+.. ..+++|.|+||||||++++.+.+.++.+++.|+|....++..+
T Consensus 46 ~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhc
Confidence 344444555555555543 4579999999999999999999999999999999888766433
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=6.7e-07 Score=99.83 Aligned_cols=177 Identities=12% Similarity=0.116 Sum_probs=103.8
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE---EEeccccCCHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV---YTSCLSCYSPRIL 123 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~---yVnc~~~~s~r~l 123 (535)
-+|..++ .+.|-+..+..|.+.+.. +..++ +++|||+|+|||++++.+.+.+..... .-.|..|.+.+.+
T Consensus 11 yRP~~f~----~viGq~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 11 YRPSTFE----SVVGQEALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HCCCCHH----HhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 3566677 445668888889888865 24566 779999999999999999998864321 1246677655432
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
-+.---.+ . ..++. ..... +.++.+++.+... ...+..-|+||||+|.|..
T Consensus 85 ~~~~~~n~--~---~ld~~----~~~~v----d~Ir~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~- 135 (614)
T PRK14971 85 NEQRSYNI--H---ELDAA----SNNSV----DDIRNLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQ- 135 (614)
T ss_pred hcCCCCce--E---Eeccc----ccCCH----HHHHHHHHHHhhC---------------cccCCcEEEEEECcccCCH-
Confidence 21000000 0 00110 01112 2234444322110 1123455788999999953
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+-..+|++.-|..+ .+..+||+++.. ..++..+-+ ....+.|.+++.+++.++|..
T Consensus 136 ----~a~naLLK~LEepp-~~tifIL~tt~~-~kIl~tI~S-Rc~iv~f~~ls~~ei~~~L~~ 191 (614)
T PRK14971 136 ----AAFNAFLKTLEEPP-SYAIFILATTEK-HKILPTILS-RCQIFDFNRIQVADIVNHLQY 191 (614)
T ss_pred ----HHHHHHHHHHhCCC-CCeEEEEEeCCc-hhchHHHHh-hhheeecCCCCHHHHHHHHHH
Confidence 34667777667643 457778877643 233321111 116899999999999988874
No 127
>PF14516 AAA_35: AAA-like domain
Probab=98.51 E-value=2.2e-06 Score=88.96 Aligned_cols=184 Identities=14% Similarity=0.156 Sum_probs=106.1
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC-----CHHHHHHHHHHHH
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY-----SPRILFESILNQL 131 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~-----s~r~l~~~Il~~L 131 (535)
...|..--.++...|.. ++..++|+||..+||||++..+++.+ ++.++||||.... +...++..++..+
T Consensus 13 Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred ccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 34566444555555543 35579999999999999999999776 5889999998642 3556777777777
Q ss_pred hhcccccc--CCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc-CCCC
Q 009415 132 LLHKKNAF--NGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-KSSS 208 (535)
Q Consensus 132 ~~~~~~~~--~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d-~~~~ 208 (535)
.....-.. +.+- .........+...+.+.+ +. ...+++||+|||+|.+.+.. -..+
T Consensus 90 ~~~L~l~~~l~~~w-~~~~~~~~~~~~~~~~~l---l~-----------------~~~~~lVL~iDEiD~l~~~~~~~~d 148 (331)
T PF14516_consen 90 SRQLKLDEKLDEYW-DEEIGSKISCTEYFEEYL---LK-----------------QIDKPLVLFIDEIDRLFEYPQIADD 148 (331)
T ss_pred HHHcCCChhHHHHH-HHhcCChhhHHHHHHHHH---Hh-----------------cCCCCEEEEEechhhhccCcchHHH
Confidence 65432110 0000 000001112222222211 11 12478999999999997521 1124
Q ss_pred hHHHHHccccccC----CCcEEEEEEeCCCccccccC--CCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 209 ILPFLFGLSDILK----MPEVGMIFISSTSPDTYHSN--TGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 209 lL~~L~rL~E~~~----~~~l~vI~Is~~~~~~f~~~--~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
++..|..+++... -.++++|++..+........ .-......|..+++|.+|+.+.+...
T Consensus 149 F~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 149 FFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred HHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence 5555555666432 13577888776542211110 00111247889999999999877643
No 128
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.50 E-value=8.6e-06 Score=83.94 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHhccCCCCC-CeEEECCCCCCHHHHHHHHHHhcC------CCeEEEeccccCCH----HHHHHHHHHHH
Q 009415 63 RRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLS------RPFVYTSCLSCYSP----RILFESILNQL 131 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GTGKTs~v~~vl~~l~------~~~~yVnc~~~~s~----r~l~~~Il~~L 131 (535)
|+.....|++++.......| .+-|+|+=|+|||++++.+.+.++ ..+++.|+..+... ..++..|.++|
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 55677788888876532333 478999999999999999998875 34778888877653 44566666666
Q ss_pred hhc
Q 009415 132 LLH 134 (535)
Q Consensus 132 ~~~ 134 (535)
...
T Consensus 81 ~~~ 83 (325)
T PF07693_consen 81 EKH 83 (325)
T ss_pred HHh
Confidence 544
No 129
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.48 E-value=2.7e-06 Score=93.16 Aligned_cols=131 Identities=14% Similarity=0.174 Sum_probs=88.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHH
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALI 163 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~ 163 (535)
++++||||-||||+++-++++-|+.++.||+..-.|+..+-++|.+.+..+. .++
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s-------------------------~l~ 383 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHS-------------------------VLD 383 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhcc-------------------------ccc
Confidence 8899999999999999999999999999999998998888888877774331 111
Q ss_pred HHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcccc-----ccCCCc-------------E
Q 009415 164 NVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSD-----ILKMPE-------------V 225 (535)
Q Consensus 164 ~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E-----~~~~~~-------------l 225 (535)
..+++..||+||||--. ...+..++.+-+ .++.+. +
T Consensus 384 ---------------------adsrP~CLViDEIDGa~-----~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L 437 (877)
T KOG1969|consen 384 ---------------------ADSRPVCLVIDEIDGAP-----RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLL 437 (877)
T ss_pred ---------------------cCCCcceEEEecccCCc-----HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccc
Confidence 24578899999999321 122222222221 111111 2
Q ss_pred --EEEEEeCCCcc-ccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 226 --GMIFISSTSPD-TYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 226 --~vI~Is~~~~~-~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
-+|.|+|+... .+..--+. ...|+|+|.+..-+++-|..-
T Consensus 438 ~RPIICICNdLYaPaLR~Lr~~--A~ii~f~~p~~s~Lv~RL~~I 480 (877)
T KOG1969|consen 438 TRPIICICNDLYAPALRPLRPF--AEIIAFVPPSQSRLVERLNEI 480 (877)
T ss_pred cCCEEEEecCccchhhhhcccc--eEEEEecCCChhHHHHHHHHH
Confidence 37889998622 22211111 158999999999888777643
No 130
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.3e-07 Score=86.79 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=99.5
Q ss_pred hcCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
+.+-|=|+||.+|...+--+ ..++..++.|||||||||.+++++...-+..|..+-..+
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ---------- 240 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ---------- 240 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH----------
Confidence 46788899999998877432 123335999999999999999999987654332222111
Q ss_pred HHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc--cc
Q 009415 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE--WD 204 (535)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~--~d 204 (535)
+++-..+ +| . ...++.+. -. ....+.+|+|||+|.+.. +|
T Consensus 241 LVQMfIG------dG---------A----kLVRDAFa----LA---------------KEkaP~IIFIDElDAIGtKRfD 282 (424)
T KOG0652|consen 241 LVQMFIG------DG---------A----KLVRDAFA----LA---------------KEKAPTIIFIDELDAIGTKRFD 282 (424)
T ss_pred HHhhhhc------ch---------H----HHHHHHHH----Hh---------------hccCCeEEEEechhhhcccccc
Confidence 1111111 11 1 11222221 11 133578999999999942 11
Q ss_pred --------CCCChHHHHHccccccCCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 --------KSSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 --------~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
...++|..|..|.-++....+.||..+|.. .+.-+-|.|-.. ..|.||-.+.+--..||+-+
T Consensus 283 Sek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLD-RKIEfP~Pne~aRarIlQIH 354 (424)
T KOG0652|consen 283 SEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLD-RKIEFPHPNEEARARILQIH 354 (424)
T ss_pred ccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhccccc-ccccCCCCChHHHHHHHHHh
Confidence 113566777777666655679999988864 233333455322 58999999999888887643
No 131
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.46 E-value=2.2e-06 Score=91.26 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=49.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcc-------------C-CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTL-------------N-SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~-------------~-~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
+.|-+.+.|-+...+.|...+... . -+.++++++||||||||++++.+.+.++.+++.++|.+
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 345566889999888886665210 0 12357999999999999999999999999999999865
No 132
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2e-06 Score=93.96 Aligned_cols=202 Identities=17% Similarity=0.195 Sum_probs=112.8
Q ss_pred hcCCChHHHHHHHHHHHhcc--C--CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 58 SRFPGRRVQILELLRLLGTL--N--SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~--~--~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
+.++|=+.--+.+..++.-+ . ..++.+-++||||.|||++.+.+++.|+..|..++.-..... ..+.|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv--------AeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV--------AEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH--------Hhhcc
Confidence 45677777667777777442 1 234557799999999999999999999999998875332221 12333
Q ss_pred ccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
|+.. .-| .+-.++++.||.. ....+ ++.|||+|++.. ....+-=.+|
T Consensus 483 HRRT-YVG------------------AMPGkiIq~LK~v------------~t~NP-liLiDEvDKlG~-g~qGDPasAL 529 (906)
T KOG2004|consen 483 HRRT-YVG------------------AMPGKIIQCLKKV------------KTENP-LILIDEVDKLGS-GHQGDPASAL 529 (906)
T ss_pred ccee-eec------------------cCChHHHHHHHhh------------CCCCc-eEEeehhhhhCC-CCCCChHHHH
Confidence 3211 000 0111122333211 12244 555999999962 1112222333
Q ss_pred Hcc--ccc--------c--CCCcEEEEEEe--CC---CccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCC-----h
Q 009415 214 FGL--SDI--------L--KMPEVGMIFIS--ST---SPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQAN-----Q 271 (535)
Q Consensus 214 ~rL--~E~--------~--~~~~l~vI~Is--~~---~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~-----~ 271 (535)
+.+ +|. + +..=..|+||+ |. .|+.++.|+ ..|..+-|+.+|-.+|-.+...+ -
T Consensus 530 LElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRM-----EvIelsGYv~eEKv~IA~~yLip~a~~~~ 604 (906)
T KOG2004|consen 530 LELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRM-----EVIELSGYVAEEKVKIAERYLIPQALKDC 604 (906)
T ss_pred HHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhh-----heeeccCccHHHHHHHHHHhhhhHHHHHc
Confidence 322 111 0 11112455554 44 377777777 68999999999999998765432 2
Q ss_pred hhhhHHH----Hhhhhcccccccc--HHHHHHHHHHhhhh
Q 009415 272 KLYSSFL----DIVLRPFCRITKR--VDELSTAFSLLFKR 305 (535)
Q Consensus 272 ~l~~~f~----~~vl~~~~~~~rd--l~eL~~~~~~L~~~ 305 (535)
++-+.++ ++++..+.+|||. +..|...+.+.|.+
T Consensus 605 gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk 644 (906)
T KOG2004|consen 605 GLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRK 644 (906)
T ss_pred CCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333444 2233444456663 55555555554444
No 133
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.44 E-value=2.2e-06 Score=84.29 Aligned_cols=177 Identities=13% Similarity=0.219 Sum_probs=102.9
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
.+.+++++-..|.++... +..|++++|||+|+||-|.+..+++++ |+.-..|.-++..|+.. ..|....
T Consensus 14 ~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~------kklEist 85 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSK------KKLEIST 85 (351)
T ss_pred hcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCC------ceEEEEE
Confidence 477888888888776553 357999999999999999999999986 33323333222222100 0000000
Q ss_pred ccccCCC---CCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHH
Q 009415 136 KNAFNGY---SSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (535)
Q Consensus 136 ~~~~~g~---~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~ 212 (535)
- .+.| -++....+.+. ..+++++.++-+. ....++ .+...-||||-|+|.|.. +--++
T Consensus 86 v--sS~yHlEitPSDaG~~DR--vViQellKevAQt----~qie~~------~qr~fKvvvi~ead~LT~-----dAQ~a 146 (351)
T KOG2035|consen 86 V--SSNYHLEITPSDAGNYDR--VVIQELLKEVAQT----QQIETQ------GQRPFKVVVINEADELTR-----DAQHA 146 (351)
T ss_pred e--cccceEEeChhhcCcccH--HHHHHHHHHHHhh----cchhhc------cccceEEEEEechHhhhH-----HHHHH
Confidence 0 0000 00111111111 1123333322110 000111 133566899999999952 34578
Q ss_pred HHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 213 LFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 213 L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
|-|-.|-+. .++.+|+++|.. .+.+.+|+ ..|..|.++++|+..+|..-.
T Consensus 147 LRRTMEkYs-~~~RlIl~cns~SriIepIrSRC-----l~iRvpaps~eeI~~vl~~v~ 199 (351)
T KOG2035|consen 147 LRRTMEKYS-SNCRLILVCNSTSRIIEPIRSRC-----LFIRVPAPSDEEITSVLSKVL 199 (351)
T ss_pred HHHHHHHHh-cCceEEEEecCcccchhHHhhhe-----eEEeCCCCCHHHHHHHHHHHH
Confidence 888888764 578999998875 44555555 688999999999999997643
No 134
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.43 E-value=1.2e-06 Score=93.76 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=53.1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCHHHHH
Q 009415 53 LDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSPRILF 124 (535)
Q Consensus 53 ~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~--~~~yVnc~~~~s~r~l~ 124 (535)
.+++.+.+.||++.|+.+...+-. ..+++|+||||||||++++.+....+. ++.+++|.-. ++..+|
T Consensus 15 ~~~l~~~i~gre~vI~lll~aala----g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft-tp~DLf 83 (498)
T PRK13531 15 SSALEKGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVF 83 (498)
T ss_pred HHHHhhhccCcHHHHHHHHHHHcc----CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec-CcHHhc
Confidence 466788999999999999888765 579999999999999999999987653 5677777532 443333
No 135
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.6e-06 Score=89.68 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=91.0
Q ss_pred CCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHH
Q 009415 80 SMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVI 156 (535)
Q Consensus 80 ~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~ 156 (535)
..++ ++++||+|+|||++++.+.+.+... ..--.|.+|.+.+.+-. +.-++- .-+........+. ++
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~-------g~HPD~-~~i~~~~~~~~i~--id 89 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRA-------GSHPDN-FVLEPEEADKTIK--VD 89 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc-------CCCCCE-EEEeccCCCCCCC--HH
Confidence 4555 7799999999999999999988532 11225777776654321 110110 0000000001111 23
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC--
Q 009415 157 FVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS-- 234 (535)
Q Consensus 157 ~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~-- 234 (535)
.++++.+.+... ...+..-|+|||++|+|.. +--.+|++.-|..+ ++..+|++++.+
T Consensus 90 ~iR~l~~~~~~~---------------~~~~~~kv~iI~~a~~m~~-----~aaNaLLK~LEEPp-~~~~fiL~t~~~~~ 148 (328)
T PRK05707 90 QVRELVSFVVQT---------------AQLGGRKVVLIEPAEAMNR-----NAANALLKSLEEPS-GDTVLLLISHQPSR 148 (328)
T ss_pred HHHHHHHHHhhc---------------cccCCCeEEEECChhhCCH-----HHHHHHHHHHhCCC-CCeEEEEEECChhh
Confidence 444444332111 1123445667899999953 34566777667654 578888888774
Q ss_pred -ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 235 -PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 235 -~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
++.+.+|+ ..+.|++.+.+++.+.|...
T Consensus 149 ll~TI~SRc-----~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 149 LLPTIKSRC-----QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred CcHHHHhhc-----eeeeCCCcCHHHHHHHHHHh
Confidence 34455555 68999999999999999864
No 136
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.9e-06 Score=89.96 Aligned_cols=152 Identities=20% Similarity=0.290 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhccC------CCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009415 64 RVQILELLRLLGTLN------SSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (535)
Q Consensus 64 e~qi~~L~~ll~~~~------~~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~ 136 (535)
..|++++..+|..+. +..| -+++.||||||||.++|+++-+-+++|.|....+.- ..+
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd-------Em~-------- 377 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD-------EMF-------- 377 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh-------hhh--------
Confidence 367888999997752 2334 499999999999999999999999999998765532 111
Q ss_pred cccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCCh-------
Q 009415 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI------- 209 (535)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~l------- 209 (535)
-|++ ..++++++.. .| .+-++||+|||+|.+.....+.+.
T Consensus 378 ---VGvG-----------ArRVRdLF~a----Ak---------------~~APcIIFIDEiDavG~kR~~~~~~y~kqTl 424 (752)
T KOG0734|consen 378 ---VGVG-----------ARRVRDLFAA----AK---------------ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTL 424 (752)
T ss_pred ---hccc-----------HHHHHHHHHH----HH---------------hcCCeEEEEechhhhcccCCccHHHHHHHHH
Confidence 1111 1134444432 11 346899999999999532222222
Q ss_pred HHHHHccccccCCCcEEEEEEeCCC-ccc---cccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 210 LPFLFGLSDILKMPEVGMIFISSTS-PDT---YHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 210 L~~L~rL~E~~~~~~l~vI~Is~~~-~~~---f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
-+.|..+.-. .+|-+||+|+.+- |+. -+.|.|-+. .+|+.|..+-.-=.+||..
T Consensus 425 NQLLvEmDGF--~qNeGiIvigATNfpe~LD~AL~RPGRFD-~~v~Vp~PDv~GR~eIL~~ 482 (752)
T KOG0734|consen 425 NQLLVEMDGF--KQNEGIIVIGATNFPEALDKALTRPGRFD-RHVTVPLPDVRGRTEILKL 482 (752)
T ss_pred HHHHHHhcCc--CcCCceEEEeccCChhhhhHHhcCCCccc-eeEecCCCCcccHHHHHHH
Confidence 2223333333 3466777777553 333 344666444 5888888887766777753
No 137
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.40 E-value=5.9e-06 Score=83.45 Aligned_cols=180 Identities=18% Similarity=0.248 Sum_probs=112.5
Q ss_pred cCCChHHHHHHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccc-cCCHHHHHHHHHHHHh
Q 009415 59 RFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLS-CYSPRILFESILNQLL 132 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~-~~s~r~l~~~Il~~L~ 132 (535)
.+.|-..|...|..++.... +.+.++++-||.|+|||.++...+.. .+..+..|.... ..+-+.....|..++.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 35666777777887776632 23456999999999999998888865 445555554433 3456778888888887
Q ss_pred hccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHH
Q 009415 133 LHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPF 212 (535)
Q Consensus 133 ~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~ 212 (535)
...... +. .+..|.+.|..++.. ++. ++...+.++|.|+||+|-.... ..+.+||.
T Consensus 105 ~e~~~~--~k-------~~gsfte~l~~lL~~----L~~----------~~~~t~~~ViFIldEfDlf~~h-~rQtllYn 160 (408)
T KOG2228|consen 105 LELNRI--VK-------SFGSFTENLSKLLEA----LKK----------GDETTSGKVIFILDEFDLFAPH-SRQTLLYN 160 (408)
T ss_pred HHHhhh--he-------eecccchhHHHHHHH----Hhc----------CCCCCCceEEEEeehhhccccc-hhhHHHHH
Confidence 653211 11 122233333333432 221 1223446789999999988653 34899999
Q ss_pred HHccccccCCCcEEEEEEeCCC--cc----ccccCCCCCCCeeEec-CCCCHHHHHHHHhh
Q 009415 213 LFGLSDILKMPEVGMIFISSTS--PD----TYHSNTGYVAPIHVYF-PECTEDDLRQIFMR 266 (535)
Q Consensus 213 L~rL~E~~~~~~l~vI~Is~~~--~~----~f~~~~g~~~p~~I~F-ppYt~~el~~IL~~ 266 (535)
||.+.+....| +|+|.++... .+ +.-+|... ..|+| |+..-++..+|+..
T Consensus 161 lfDisqs~r~P-iciig~Ttrld~lE~LEKRVKSRFsh---r~I~m~~~~~l~~yv~l~r~ 217 (408)
T KOG2228|consen 161 LFDISQSARAP-ICIIGVTTRLDILELLEKRVKSRFSH---RVIFMLPSLPLGDYVDLYRK 217 (408)
T ss_pred HHHHHhhcCCC-eEEEEeeccccHHHHHHHHHHhhccc---ceeeccCCCChHHHHHHHHH
Confidence 99998876666 8999988653 11 22344433 23444 45555777777654
No 138
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1e-06 Score=91.39 Aligned_cols=166 Identities=13% Similarity=0.088 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhcccccc
Q 009415 63 RRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLHKKNAF 139 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~ 139 (535)
-+..+..|...+.. +..++ +++|||+|+|||++++.+++.+-... .--.|..|.+.+.+... .-++ .
T Consensus 11 q~~~~~~L~~~~~~--~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~-------~hpD-~ 80 (329)
T PRK08058 11 QPVVVKMLQNSIAK--NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG-------NHPD-V 80 (329)
T ss_pred HHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC-------CCCC-E
Confidence 45666777777754 34566 58999999999999999998874221 11246677655533221 1010 0
Q ss_pred CCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccc
Q 009415 140 NGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDI 219 (535)
Q Consensus 140 ~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~ 219 (535)
.-+. + ....+. ++.++++++.+-. ....+..-|+|||++|++.. +-..+|++.-|.
T Consensus 81 ~~i~-~-~~~~i~--id~ir~l~~~~~~---------------~~~~~~~kvviI~~a~~~~~-----~a~NaLLK~LEE 136 (329)
T PRK08058 81 HLVA-P-DGQSIK--KDQIRYLKEEFSK---------------SGVESNKKVYIIEHADKMTA-----SAANSLLKFLEE 136 (329)
T ss_pred EEec-c-ccccCC--HHHHHHHHHHHhh---------------CCcccCceEEEeehHhhhCH-----HHHHHHHHHhcC
Confidence 0000 0 011111 2234444433211 01133456888999999953 345677776676
Q ss_pred cCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 220 LKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 220 ~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.+ +++.+|++++.+ .+.+.+|+ ..|.|++.+.+++.++|....
T Consensus 137 Pp-~~~~~Il~t~~~~~ll~TIrSRc-----~~i~~~~~~~~~~~~~L~~~g 182 (329)
T PRK08058 137 PS-GGTTAILLTENKHQILPTILSRC-----QVVEFRPLPPESLIQRLQEEG 182 (329)
T ss_pred CC-CCceEEEEeCChHhCcHHHHhhc-----eeeeCCCCCHHHHHHHHHHcC
Confidence 54 578888888753 23344444 799999999999999998654
No 139
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.40 E-value=3.7e-06 Score=94.10 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=47.1
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEecccc
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSC 117 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~~ 117 (535)
+|..++ .+.|++..+..+...+.. ....+++|+||+|||||++++.+.+.. +.+++.+||...
T Consensus 149 rp~~~~----~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 149 RPRAFS----EIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CcCcHH----hceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 455555 456888888887776643 234569999999999999999998655 246888998764
No 140
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.40 E-value=2.6e-06 Score=95.98 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=81.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
..++|+||||||||++++.++.+++++++.++|.+..+. ..+ .... .++..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~----------~~g---------------~~~~----~~~~~ 236 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM----------FVG---------------VGAS----RVRDM 236 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh----------hhc---------------ccHH----HHHHH
Confidence 459999999999999999999999999999987653211 111 0111 12233
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-----C----CChHHHHHc-cccccCCCcEEEEEEe
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-----S----SSILPFLFG-LSDILKMPEVGMIFIS 231 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-----~----~~lL~~L~r-L~E~~~~~~l~vI~Is 231 (535)
++.. + ...+.||+|||+|.+..... . ..++..|+. +........+.||..+
T Consensus 237 f~~a----~---------------~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaT 297 (644)
T PRK10733 237 FEQA----K---------------KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 297 (644)
T ss_pred HHHH----H---------------hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEec
Confidence 3221 0 22568999999999942110 0 124444432 2223222334455555
Q ss_pred CCCc--cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 232 STSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 232 ~~~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
|.+. +.-+.+.|-+. .+|+|+.++.++-.+||...
T Consensus 298 N~p~~lD~Al~RpgRfd-r~i~v~~Pd~~~R~~Il~~~ 334 (644)
T PRK10733 298 NRPDVLDPALLRPGRFD-RQVVVGLPDVRGREQILKVH 334 (644)
T ss_pred CChhhcCHHHhCCcccc-eEEEcCCCCHHHHHHHHHHH
Confidence 5541 22223334222 58999999999999998754
No 141
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.40 E-value=1.8e-05 Score=83.31 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=51.9
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcc-----------CC-CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 53 LDDLLSRFPGRRVQILELLRLLGTL-----------NS-SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 53 ~~~l~~~~p~Re~qi~~L~~ll~~~-----------~~-~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.+.|-+.+.|.++..+.|...+... .. .+.+++++||||||||++++++.+.++.+++.+++.++
T Consensus 7 ~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 7 VAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred HHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 4556678888888888887666541 01 23569999999999999999999999999999997644
No 142
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.39 E-value=3.7e-06 Score=97.72 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=51.9
Q ss_pred HHhhcCCChHHHHHHHHHHHhccC----C---CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009415 55 DLLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s 119 (535)
.+.+.+.|.+..+..+...+.... . +...+++.||+|||||++++.+.+.+ +.+++++||.+...
T Consensus 562 ~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 562 VLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred HhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 456789999999999999987531 1 22357899999999999999999987 36789999877543
No 143
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4e-06 Score=92.28 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
.-|++|||||||||.++++|+.+.+..|.-|...|
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE 740 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 740 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH
Confidence 34999999999999999999999998888777654
No 144
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-06 Score=89.41 Aligned_cols=151 Identities=16% Similarity=0.190 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccC
Q 009415 64 RVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFN 140 (535)
Q Consensus 64 e~qi~~L~~ll~~~---~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~ 140 (535)
+.-|+.|+..-.+. ..+..+|++|||||||||-.++.+.++.|..|+.+-.-..-
T Consensus 364 e~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA---------------------- 421 (630)
T KOG0742|consen 364 EKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA---------------------- 421 (630)
T ss_pred HHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc----------------------
Confidence 45677777655442 23556899999999999999999999999888765432110
Q ss_pred CCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc--------cCCCChHHH
Q 009415 141 GYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW--------DKSSSILPF 212 (535)
Q Consensus 141 g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~--------d~~~~lL~~ 212 (535)
+-.. +-+..+.+++ ++.+ ..++-++|+|||+|...-- +....|-..
T Consensus 422 ----PlG~----qaVTkiH~lF----DWak--------------kS~rGLllFIDEADAFLceRnktymSEaqRsaLNAl 475 (630)
T KOG0742|consen 422 ----PLGA----QAVTKIHKLF----DWAK--------------KSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNAL 475 (630)
T ss_pred ----ccch----HHHHHHHHHH----HHHh--------------hcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHH
Confidence 0000 1122233333 3321 2345689999999987411 011344456
Q ss_pred HHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 213 LFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 213 L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
|||-.+.+. .+.+|+.+|.+ .+|-+.+.-+....|.||-.-.+|-..+|.
T Consensus 476 LfRTGdqSr--divLvlAtNrp-gdlDsAV~DRide~veFpLPGeEERfkll~ 525 (630)
T KOG0742|consen 476 LFRTGDQSR--DIVLVLATNRP-GDLDSAVNDRIDEVVEFPLPGEEERFKLLN 525 (630)
T ss_pred HHHhccccc--ceEEEeccCCc-cchhHHHHhhhhheeecCCCChHHHHHHHH
Confidence 788888863 56777777764 455443332333689999999999888886
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.35 E-value=6.4e-06 Score=87.59 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 53 LDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 53 ~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+....+.+...+..+..+...+.. ..+++++||||||||++++.+...+.
T Consensus 170 ~~~~l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 170 LEDALNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred HHHHhhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 344456778888999999888875 56899999999999999999998875
No 146
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.35 E-value=2.7e-05 Score=82.11 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=52.9
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcc---------C--C-CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 53 LDDLLSRFPGRRVQILELLRLLGTL---------N--S-SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 53 ~~~l~~~~p~Re~qi~~L~~ll~~~---------~--~-~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.+.|.+.+.|.+...+.+...+... . . .+.+++++||||+|||++++.+.+.++.+++.++|.+.
T Consensus 10 ~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 10 VSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred HHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 4556778999999999988877431 0 1 13579999999999999999999999999999998644
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=3.8e-06 Score=86.48 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=99.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCC-CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSM-PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~-~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~ 137 (535)
.+.|-+.....|...+... .. +..+++||+|+||++++.++++.+-... .|..|.+.+ + .... + |+
T Consensus 5 ~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~---~c~~c~~~~--~----~~~~-h-PD 71 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQG---SPSKNIRRR--L----EEGN-H-PD 71 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCC---CCCCcHhcc--c----ccCC-C-CC
Confidence 5677788888898888663 34 4588999999999999999999874332 344443322 0 0000 0 00
Q ss_pred -----c---cCCCCC-----------CcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCc
Q 009415 138 -----A---FNGYSS-----------AKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFE 198 (535)
Q Consensus 138 -----~---~~g~~~-----------~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d 198 (535)
+ ..|... .+....+. ++.++++.+.+ .. ....+..-|+|||++|
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~--id~ir~i~~~l-~~--------------~p~~~~~kVvII~~ae 134 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR--LEQIREIKRFL-SR--------------PPLEAPRKVVVIEDAE 134 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCc--HHHHHHHHHHH-cc--------------CcccCCceEEEEEchh
Confidence 0 001000 00000010 12233332221 10 0113456688899999
Q ss_pred ccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 199 LVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 199 ~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.+.. +--.+|++.-|-.+ +..+|++++.+ +++++.+-+ ....|.|++++.+++.++|....
T Consensus 135 ~m~~-----~aaNaLLK~LEEPp--~~~fILi~~~~-~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 135 TMNE-----AAANALLKTLEEPG--NGTLILIAPSP-ESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred hcCH-----HHHHHHHHHHhCCC--CCeEEEEECCh-HhCcHHHHh-hceEEecCCCCHHHHHHHHHHhh
Confidence 9953 34566777767753 56788888754 444432221 12799999999999999999754
No 148
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=3.7e-06 Score=74.94 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEecccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSC 117 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~ 117 (535)
+.++|+||.|+|||++++++++.+. ..++|+||...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 4689999999999999999999876 78899998654
No 149
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=3.9e-06 Score=86.47 Aligned_cols=165 Identities=13% Similarity=0.049 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhccccccC
Q 009415 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLHKKNAFN 140 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~ 140 (535)
......|.+.+.. +..++ ++++||+|+||+++++.+.+.+-... .--.|..|.+.+.+-. +.-|+-.
T Consensus 8 ~~~~~~l~~~~~~--~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~-------g~HPD~~- 77 (325)
T PRK06871 8 QPTYQQITQAFQQ--GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQA-------GNHPDFH- 77 (325)
T ss_pred HHHHHHHHHHHHc--CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc-------CCCCCEE-
Confidence 3455666666655 24566 66999999999999999999885321 1225777766553321 1101100
Q ss_pred CCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcccccc
Q 009415 141 GYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDIL 220 (535)
Q Consensus 141 g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~ 220 (535)
-. .+.....+. ++.++++.+.+... ...+..-|+|||++|+|.. .--.+|++.-|-.
T Consensus 78 ~i-~p~~~~~I~--id~iR~l~~~~~~~---------------~~~g~~KV~iI~~a~~m~~-----~AaNaLLKtLEEP 134 (325)
T PRK06871 78 IL-EPIDNKDIG--VDQVREINEKVSQH---------------AQQGGNKVVYIQGAERLTE-----AAANALLKTLEEP 134 (325)
T ss_pred EE-ccccCCCCC--HHHHHHHHHHHhhc---------------cccCCceEEEEechhhhCH-----HHHHHHHHHhcCC
Confidence 00 000011111 33444444332110 1234566888999999963 3456777776775
Q ss_pred CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 221 KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 221 ~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+ +++.+|++++.+ ++.+.+|+ ..+.|+|.+.+++.+.|...
T Consensus 135 p-~~~~fiL~t~~~~~llpTI~SRC-----~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 135 R-PNTYFLLQADLSAALLPTIYSRC-----QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred C-CCeEEEEEECChHhCchHHHhhc-----eEEeCCCCCHHHHHHHHHHH
Confidence 4 577788887663 33455555 79999999999999999864
No 150
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.29 E-value=1.3e-05 Score=85.14 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHhc----------cCC------CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 54 DDLLSRFPGRRVQILELLRLLGT----------LNS------SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~----------~~~------~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
+.+.+.+.|-++-++.|...+.. ... ...+++++||||||||++++++.+.++.+++.++|..
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~ 151 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATT 151 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhh
Confidence 34556778888888888766521 000 1246999999999999999999999999999888744
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.29 E-value=4.6e-06 Score=96.77 Aligned_cols=64 Identities=13% Similarity=0.213 Sum_probs=49.8
Q ss_pred HHhhcCCChHHHHHHHHHHHhccC----C---CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 55 DLLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.+.+++.|-+.-+..|...+.... . +..+++++||+|||||++++.+.+.+ +.++++++|.+..
T Consensus 565 ~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 565 ELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred HhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 355678899999999998886531 1 12358899999999999999999887 3568889987653
No 152
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.28 E-value=1e-05 Score=83.22 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhccccc
Q 009415 62 GRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHKKNA 138 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~ 138 (535)
+-+....++....... ...++ ++++||||||||+++.++.+.+... .....|..|...+.+ . .++.++-
T Consensus 5 ~~~~~~~~l~~~~~~~-~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~----~---~~~~~d~ 76 (325)
T COG0470 5 PWQEAVKRLLVQALES-GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLI----P---AGNHPDF 76 (325)
T ss_pred cchhHHHHHHHHHHhc-CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHH----h---hcCCCce
Confidence 3344455555544421 24566 9999999999999999999998522 122223223111100 0 0110000
Q ss_pred cCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcccc
Q 009415 139 FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSD 218 (535)
Q Consensus 139 ~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E 218 (535)
. -. ++..-...+-.++.++++.+.+.. ....+..-||+|||+|.|.. +--.+|.+..|
T Consensus 77 l-el-~~s~~~~~~i~~~~vr~~~~~~~~---------------~~~~~~~kviiidead~mt~-----~A~nallk~lE 134 (325)
T COG0470 77 L-EL-NPSDLRKIDIIVEQVRELAEFLSE---------------SPLEGGYKVVIIDEADKLTE-----DAANALLKTLE 134 (325)
T ss_pred E-Ee-cccccCCCcchHHHHHHHHHHhcc---------------CCCCCCceEEEeCcHHHHhH-----HHHHHHHHHhc
Confidence 0 00 000000110112223333322110 01134667888999999963 44567777777
Q ss_pred ccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 219 ILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 219 ~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
..+ .+..+|++++.+ .+.+.+|+ ..+.|+|.+..+....+.
T Consensus 135 ep~-~~~~~il~~n~~~~il~tI~SRc-----~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 EPP-KNTRFILITNDPSKILPTIRSRC-----QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred cCC-CCeEEEEEcCChhhccchhhhcc-----eeeecCCchHHHHHHHhh
Confidence 754 578888898854 22333444 799999844444433333
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.28 E-value=8.9e-06 Score=94.30 Aligned_cols=64 Identities=11% Similarity=0.225 Sum_probs=48.9
Q ss_pred HHhhcCCChHHHHHHHHHHHhccC----C---CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 55 DLLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.|.+++.|-+.-+..|...+.... . +...++++||+|+|||++++.+.+.+ +..++.+++.++.
T Consensus 506 ~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~ 579 (821)
T CHL00095 506 TLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYM 579 (821)
T ss_pred HhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcc
Confidence 466789999999999988886421 1 12246799999999999999999987 3567788876543
No 154
>PRK04132 replication factor C small subunit; Provisional
Probab=98.27 E-value=6.8e-06 Score=93.92 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=86.7
Q ss_pred CeEEEC--CCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHH
Q 009415 83 PLFVYG--SASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (535)
Q Consensus 83 ~l~I~G--~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (535)
.-|+.| |++.||||+++++++++ +..++.+|+.+..+..
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid---------------------------------- 611 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGIN---------------------------------- 611 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH----------------------------------
Confidence 356789 99999999999999997 4678999986543321
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC-
Q 009415 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS- 234 (535)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~- 234 (535)
.+++.+..+... . +....+.-||||||+|+|.. .-..+|+++.|..+ .++.+|+++|.+
T Consensus 612 -~IR~iIk~~a~~-------~------~~~~~~~KVvIIDEaD~Lt~-----~AQnALLk~lEep~-~~~~FILi~N~~~ 671 (846)
T PRK04132 612 -VIREKVKEFART-------K------PIGGASFKIIFLDEADALTQ-----DAQQALRRTMEMFS-SNVRFILSCNYSS 671 (846)
T ss_pred -HHHHHHHHHHhc-------C------CcCCCCCEEEEEECcccCCH-----HHHHHHHHHhhCCC-CCeEEEEEeCChh
Confidence 122233222110 0 00011346888999999953 34677888878753 578999999875
Q ss_pred --ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 235 --PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 235 --~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.+.+.+|+ ..+.|++++.+++.++|..-
T Consensus 672 kIi~tIrSRC-----~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 672 KIIEPIQSRC-----AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred hCchHHhhhc-----eEEeCCCCCHHHHHHHHHHH
Confidence 33444554 79999999999999988753
No 155
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=4.4e-06 Score=86.70 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=93.2
Q ss_pred CCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE---EEeccccCCHHHHHHHHHHHHhhcccccc---CCC----------
Q 009415 80 SMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV---YTSCLSCYSPRILFESILNQLLLHKKNAF---NGY---------- 142 (535)
Q Consensus 80 ~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~---yVnc~~~~s~r~l~~~Il~~L~~~~~~~~---~g~---------- 142 (535)
..++ ++++||+|+||+++++.+.+.+..... .-.|..|.+.+.+-....-.+....+... .|.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4555 779999999999999999999864321 23577776555332211000000000000 000
Q ss_pred -CCCcCCCChh--HHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccc
Q 009415 143 -SSAKRCEKPS--DFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDI 219 (535)
Q Consensus 143 -~~~~r~~~~~--~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~ 219 (535)
...++....+ =.++.++.+.+.+ .. ....++.-|+|||++|+|.. +--.+|++.-|-
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~-~~--------------~~~~~~~kV~iI~~ae~m~~-----~AaNaLLKtLEE 158 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFC-GV--------------GTHRGGARVVVLYPAEALNV-----AAANALLKTLEE 158 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHh-cc--------------CCccCCceEEEEechhhcCH-----HHHHHHHHHhcC
Confidence 0000000010 1234455444332 10 01134556888999999953 345666776676
Q ss_pred cCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 220 LKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 220 ~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.+ +++.+|++++.+ ++.+.+|+ ..|+|++.+.+++.+.|....
T Consensus 159 Pp-~~t~fiL~t~~~~~LLpTI~SRc-----q~i~~~~~~~~~~~~~L~~~~ 204 (342)
T PRK06964 159 PP-PGTVFLLVSARIDRLLPTILSRC-----RQFPMTVPAPEAAAAWLAAQG 204 (342)
T ss_pred CC-cCcEEEEEECChhhCcHHHHhcC-----EEEEecCCCHHHHHHHHHHcC
Confidence 54 578888888774 33455555 799999999999999998653
No 156
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.1e-06 Score=81.32 Aligned_cols=138 Identities=20% Similarity=0.305 Sum_probs=82.7
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHH
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFV 158 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L 158 (535)
+++..+++|||||||||-+++++.++-...|+.|+..+.. ++..+. ... ..
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefv----------qkylge---------------gpr----mv 237 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV----------QKYLGE---------------GPR----MV 237 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH----------HHHhcc---------------CcH----HH
Confidence 4555699999999999999999999998888888865432 222221 111 11
Q ss_pred HHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc--ccCC-------CChH-HHHHccccccCCCcEEEE
Q 009415 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE--WDKS-------SSIL-PFLFGLSDILKMPEVGMI 228 (535)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~--~d~~-------~~lL-~~L~rL~E~~~~~~l~vI 228 (535)
++++ .-.+ .+.+-+|+|||+|.+.. +|+. +.+| ..|..+.-.-...|++||
T Consensus 238 rdvf----rlak---------------enapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvi 298 (408)
T KOG0727|consen 238 RDVF----RLAK---------------ENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVI 298 (408)
T ss_pred HHHH----HHHh---------------ccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEE
Confidence 2222 1111 23567899999999842 2211 1233 333334333224589999
Q ss_pred EEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 229 FISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 229 ~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
..+|.. .+.-+-+.|-.. ..|.||-.++-|-+-++.
T Consensus 299 matnradtldpallrpgrld-rkiefplpdrrqkrlvf~ 336 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLD-RKIEFPLPDRRQKRLVFS 336 (408)
T ss_pred EecCcccccCHhhcCCcccc-ccccCCCCchhhhhhhHH
Confidence 988763 333333455222 588999777766555543
No 157
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.24 E-value=1.4e-05 Score=93.71 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=103.4
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc-CCHHHHHHHHHHHHhhccc
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC-YSPRILFESILNQLLLHKK 136 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~-~s~r~l~~~Il~~L~~~~~ 136 (535)
..+..|..-+..|... ...+.++|+||+|.||||++...++..+ +++++++... .++..|+..++..|....+
T Consensus 14 ~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~ 87 (903)
T PRK04841 14 HNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATN 87 (903)
T ss_pred cccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcC
Confidence 3556666555555321 2356799999999999999999998887 8889988754 5777888999999864321
Q ss_pred cccCCCC---CCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 137 NAFNGYS---SAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 137 ~~~~g~~---~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
....... .......... .+..++..+. ..+.+++||||+++.+.+ +.+...|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~--------------~~~~~~~lvlDD~h~~~~----~~~~~~l 142 (903)
T PRK04841 88 GHCSKSEALAQKRQYASLSS-------LFAQLFIELA--------------DWHQPLYLVIDDYHLITN----PEIHEAM 142 (903)
T ss_pred cccchhhhhhccCCcCCHHH-------HHHHHHHHHh--------------cCCCCEEEEEeCcCcCCC----hHHHHHH
Confidence 1000000 0000112221 2222222211 124689999999999842 3444444
Q ss_pred HccccccCCCcEEEEEEeCCCccccccCCC-CCCCeeEecC--CCCHHHHHHHHhhc
Q 009415 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTG-YVAPIHVYFP--ECTEDDLRQIFMRN 267 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g-~~~p~~I~Fp--pYt~~el~~IL~~~ 267 (535)
..+-+..+ +++.+|++|...++--..+.- ...-..|.-. ++|.+|+.+.+...
T Consensus 143 ~~l~~~~~-~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~ 198 (903)
T PRK04841 143 RFFLRHQP-ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR 198 (903)
T ss_pred HHHHHhCC-CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc
Confidence 44434433 578888888764321111110 0001244444 89999999998653
No 158
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.24 E-value=8e-06 Score=94.61 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=49.9
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcc----CC---CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTL----NS---SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~----~~---~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
+.|.+++.|-+.-+..+...+... .. +.+.+++.||+|+|||.+++++.+.+ +..++.+||.++.
T Consensus 562 ~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 562 DRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ 636 (852)
T ss_pred HHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence 345678999999999998888542 11 22347899999999999999999988 3567788877654
No 159
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.7e-05 Score=81.74 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=93.1
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~ 137 (535)
.+.|-+..++.|...+.. +..++ .+++||+|+|||++++.+.+.+-.... ..++.. ++ ...
T Consensus 5 ~i~g~~~~~~~l~~~~~~--~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~---~~~h~D---~~--------~~~-- 66 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIK--NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQ---QREYVD---II--------EFK-- 66 (313)
T ss_pred hccCcHHHHHHHHHHHHc--CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCC---CCCCCC---eE--------Eec--
Confidence 445667888888888765 34566 569999999999999999998732110 000000 00 000
Q ss_pred ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccc
Q 009415 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLS 217 (535)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~ 217 (535)
..+| ..-++ +.++++++.+... ...++.-|+|||++|.+.. +-..+|++.-
T Consensus 67 ~~~~-----~~i~v----~~ir~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~-----~a~naLLK~L 117 (313)
T PRK05564 67 PINK-----KSIGV----DDIRNIIEEVNKK---------------PYEGDKKVIIIYNSEKMTE-----QAQNAFLKTI 117 (313)
T ss_pred cccC-----CCCCH----HHHHHHHHHHhcC---------------cccCCceEEEEechhhcCH-----HHHHHHHHHh
Confidence 0001 00122 2344444332110 1133556888999999953 2345666655
Q ss_pred cccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 218 DILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 218 E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
|-.+ +++.+|++++. ++.+++..-+ ....+.|++.+.+++.+.|...
T Consensus 118 Eepp-~~t~~il~~~~-~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 118 EEPP-KGVFIILLCEN-LEQILDTIKS-RCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred cCCC-CCeEEEEEeCC-hHhCcHHHHh-hceeeeCCCcCHHHHHHHHHHH
Confidence 6543 57888888855 3455432221 1179999999999999999754
No 160
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.23 E-value=3.4e-06 Score=78.52 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEE-EeccccCCHHHHHHHHHHHHhhccccccCC
Q 009415 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVY-TSCLSCYSPRILFESILNQLLLHKKNAFNG 141 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~y-Vnc~~~~s~r~l~~~Il~~L~~~~~~~~~g 141 (535)
++.++.|.+.+.. +..|+ ++++||+|+||++++..+++.+-..... ..|..|.+.+.+-. +.-++ ...
T Consensus 3 ~~~~~~L~~~~~~--~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~-------~~~~d-~~~ 72 (162)
T PF13177_consen 3 EEIIELLKNLIKS--GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEE-------GNHPD-FII 72 (162)
T ss_dssp HHHHHHHHHHHHC--TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHT-------T-CTT-EEE
T ss_pred HHHHHHHHHHHHc--CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHh-------ccCcc-eEE
Confidence 4556677777755 35566 7899999999999999999987311110 15666654442221 10010 000
Q ss_pred CCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccC
Q 009415 142 YSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK 221 (535)
Q Consensus 142 ~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~ 221 (535)
+........+. ++.++++.+.+.. ....+..-|+|||++|.|. .+...+|++.-|..+
T Consensus 73 ~~~~~~~~~i~--i~~ir~i~~~~~~---------------~~~~~~~KviiI~~ad~l~-----~~a~NaLLK~LEepp 130 (162)
T PF13177_consen 73 IKPDKKKKSIK--IDQIREIIEFLSL---------------SPSEGKYKVIIIDEADKLT-----EEAQNALLKTLEEPP 130 (162)
T ss_dssp EETTTSSSSBS--HHHHHHHHHHCTS---------------S-TTSSSEEEEEETGGGS------HHHHHHHHHHHHSTT
T ss_pred Eecccccchhh--HHHHHHHHHHHHH---------------HHhcCCceEEEeehHhhhh-----HHHHHHHHHHhcCCC
Confidence 00000000111 2233333332210 0112345688899999995 355678888878764
Q ss_pred CCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCC
Q 009415 222 MPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECT 256 (535)
Q Consensus 222 ~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt 256 (535)
.++.+|++++.+ .+.+.+|+ ..|+|+|.+
T Consensus 131 -~~~~fiL~t~~~~~il~TI~SRc-----~~i~~~~ls 162 (162)
T PF13177_consen 131 -ENTYFILITNNPSKILPTIRSRC-----QVIRFRPLS 162 (162)
T ss_dssp -TTEEEEEEES-GGGS-HHHHTTS-----EEEEE----
T ss_pred -CCEEEEEEECChHHChHHHHhhc-----eEEecCCCC
Confidence 578889888774 44556666 788888753
No 161
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.2e-05 Score=89.73 Aligned_cols=153 Identities=14% Similarity=0.196 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhccC------CCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009415 65 VQILELLRLLGTLN------SSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (535)
Q Consensus 65 ~qi~~L~~ll~~~~------~~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~ 137 (535)
.||.++..+|.++. ..+| -+++.||||||||.++++++.+-++||+.++..+.... +.+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~----------~~g---- 386 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM----------FVG---- 386 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH----------hcc----
Confidence 57888899997742 2344 49999999999999999999999999998887553211 111
Q ss_pred ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-----------C
Q 009415 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-----------S 206 (535)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-----------~ 206 (535)
. ..+ +.++++. ..| ..-|++|.+||+|.+..... .
T Consensus 387 ----~-------~as----rvr~lf~----~ar---------------~~aP~iifideida~~~~r~G~~~~~~~~e~e 432 (774)
T KOG0731|consen 387 ----V-------GAS----RVRDLFP----LAR---------------KNAPSIIFIDEIDAVGRKRGGKGTGGGQDERE 432 (774)
T ss_pred ----c-------chH----HHHHHHH----Hhh---------------ccCCeEEEecccccccccccccccCCCChHHH
Confidence 0 000 1223332 111 34578999999999853210 0
Q ss_pred CChHHHHHccccccCCCcEEEEEEeCCCcccc----ccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 207 SSILPFLFGLSDILKMPEVGMIFISSTSPDTY----HSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 207 ~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f----~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+.+-+.|..+--... .-.||++..+...+. +.|.|-+. .+|+.+..+..+=.+|+.-+.
T Consensus 433 ~tlnQll~emDgf~~--~~~vi~~a~tnr~d~ld~allrpGRfd-r~i~i~~p~~~~r~~i~~~h~ 495 (774)
T KOG0731|consen 433 QTLNQLLVEMDGFET--SKGVIVLAATNRPDILDPALLRPGRFD-RQIQIDLPDVKGRASILKVHL 495 (774)
T ss_pred HHHHHHHHHhcCCcC--CCcEEEEeccCCccccCHHhcCCCccc-cceeccCCchhhhHHHHHHHh
Confidence 223334444433322 234666655432232 23555333 588888899998888887654
No 162
>PRK12377 putative replication protein; Provisional
Probab=98.21 E-value=4.4e-06 Score=82.99 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=28.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
..+++|+|+||||||+++.++++.+ +..++|++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 4579999999999999999999887 456666664
No 163
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.21 E-value=2.5e-05 Score=76.62 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=42.9
Q ss_pred hcCCChHHHHHHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009415 58 SRFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVn 113 (535)
+.+.|-|.|...|..-..... .+..++++||+.|||||++|++++.++. .+.+.|.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC
Confidence 367788999988877654432 2455799999999999999999998764 5555554
No 164
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=5.6e-06 Score=85.91 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhccccccC
Q 009415 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHKKNAFN 140 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~ 140 (535)
+....+|...+.. +..++ ++++||+|+||++++.++.+.+-.. -.--.|..|.+-+.+-. +.-|+-.
T Consensus 8 ~~~~~~l~~~~~~--~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~-------g~HPD~~- 77 (334)
T PRK07993 8 RPDYEQLVGSYQA--GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQA-------GTHPDYY- 77 (334)
T ss_pred hHHHHHHHHHHHc--CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-------CCCCCEE-
Confidence 3556667776655 35566 6799999999999999999987431 11125777766653321 1111100
Q ss_pred CCCCCcCC-CChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccc
Q 009415 141 GYSSAKRC-EKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDI 219 (535)
Q Consensus 141 g~~~~~r~-~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~ 219 (535)
-+ .+... ..+. ++.++++.+.+... ...+..-|+|||++|+|.. +--.+|++.-|.
T Consensus 78 ~i-~p~~~~~~I~--idqiR~l~~~~~~~---------------~~~g~~kV~iI~~ae~m~~-----~AaNaLLKtLEE 134 (334)
T PRK07993 78 TL-TPEKGKSSLG--VDAVREVTEKLYEH---------------ARLGGAKVVWLPDAALLTD-----AAANALLKTLEE 134 (334)
T ss_pred EE-ecccccccCC--HHHHHHHHHHHhhc---------------cccCCceEEEEcchHhhCH-----HHHHHHHHHhcC
Confidence 00 00000 1111 33444444432111 1234567888999999953 334667777677
Q ss_pred cCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 220 LKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 220 ~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.+ ++..+|++++.+ ++.+.||+ ..+.|++.+.+++.+.|..+
T Consensus 135 Pp-~~t~fiL~t~~~~~lLpTIrSRC-----q~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 135 PP-ENTWFFLACREPARLLATLRSRC-----RLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred CC-CCeEEEEEECChhhChHHHHhcc-----ccccCCCCCHHHHHHHHHHc
Confidence 54 577888888764 34455555 68999999999999999754
No 165
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.20 E-value=1.3e-05 Score=96.29 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
..++++||||||||.+|++++.+.+++++.|++.+.
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~f 1666 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKF 1666 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHH
Confidence 359999999999999999999999999999997664
No 166
>PHA02244 ATPase-like protein
Probab=98.19 E-value=1.1e-05 Score=83.87 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=44.4
Q ss_pred HHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
+.+-..+.++...+..+...+........+++|+||+|||||++++++...++.+++.+|+
T Consensus 92 ~~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 92 SGIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred hhCCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3344455565555554444443333335689999999999999999999999999999985
No 167
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2e-05 Score=77.10 Aligned_cols=159 Identities=16% Similarity=0.231 Sum_probs=91.9
Q ss_pred hhcCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHH
Q 009415 57 LSRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 57 ~~~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~ 125 (535)
...+-|=.+||..|.....-+ .+++.-+++|||||||||.+++++.+.-+..|+.|-..+
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse--------- 246 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE--------- 246 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH---------
Confidence 345667788998888766442 234445999999999999999999998876665543222
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccc--cc
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR--EW 203 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~--~~ 203 (535)
+++...+. | .++..++++..+ ..+-++|++||+|.+. .+
T Consensus 247 -lvqkyvge------g-----------------armvrelf~mar---------------tkkaciiffdeidaiggarf 287 (435)
T KOG0729|consen 247 -LVQKYVGE------G-----------------ARMVRELFEMAR---------------TKKACIIFFDEIDAIGGARF 287 (435)
T ss_pred -HHHHHhhh------h-----------------HHHHHHHHHHhc---------------ccceEEEEeeccccccCccc
Confidence 22232221 1 112223333321 3467899999999984 11
Q ss_pred cC--------CCChHHHHHccccccCCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHH
Q 009415 204 DK--------SSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (535)
Q Consensus 204 d~--------~~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL 264 (535)
|. ..++|..+..|.-.-+..|+.|++.+|.+ .+.-+.+.|-.. ..|.|--.+-+--..|+
T Consensus 288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrld-rkvef~lpdlegrt~i~ 357 (435)
T KOG0729|consen 288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLD-RKVEFGLPDLEGRTHIF 357 (435)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccc-cceeccCCcccccceeE
Confidence 11 12445555555544334589999999875 222233444211 35555544444333444
No 168
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.16 E-value=1e-05 Score=75.76 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
.|.+..+.++...+........+|+|+|++||||+.+++.+-+... -+++.|||... +.. .+-..|.++.
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~-~~~----~~e~~LFG~~ 74 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL-PEE----LLESELFGHE 74 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS--HH----HHHHHHHEBC
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh-hcc----hhhhhhhccc
Confidence 4566677777777766545557899999999999999999988653 68999999865 222 2345565653
No 169
>PRK08181 transposase; Validated
Probab=98.16 E-value=6.4e-06 Score=82.80 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=43.5
Q ss_pred CCCCCCCccccCCCCCHHHHhhcCCChHHHHHHHHH---HHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeE
Q 009415 37 YIPTLGDLVFGQEPISLDDLLSRFPGRRVQILELLR---LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFV 110 (535)
Q Consensus 37 ~~~~~~~~~f~~~~~~~~~l~~~~p~Re~qi~~L~~---ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~ 110 (535)
...+++++-|...+..- ..++..|.. ++. ...+++|+||+|||||+++.++..++ +..+.
T Consensus 73 ~~~tle~fd~~~~~~~~----------~~~~~~L~~~~~~~~----~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~ 138 (269)
T PRK08181 73 PGKTLDSFDFEAVPMVS----------KAQVMAIAAGDSWLA----KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVL 138 (269)
T ss_pred CCCCHhhCCccCCCCCC----------HHHHHHHHHHHHHHh----cCceEEEEecCCCcHHHHHHHHHHHHHHcCCcee
Confidence 35688888888665321 134444432 332 24679999999999999999998654 56677
Q ss_pred EEec
Q 009415 111 YTSC 114 (535)
Q Consensus 111 yVnc 114 (535)
|+++
T Consensus 139 f~~~ 142 (269)
T PRK08181 139 FTRT 142 (269)
T ss_pred eeeH
Confidence 7664
No 170
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.15 E-value=1.6e-05 Score=82.00 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=45.9
Q ss_pred EEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC---------------ccccccCCCCCCCeeEecC
Q 009415 189 MIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---------------PDTYHSNTGYVAPIHVYFP 253 (535)
Q Consensus 189 ~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---------------~~~f~~~~g~~~p~~I~Fp 253 (535)
+=||++||++.|- -+-|..|.|+.|..- .-.+|+.+|.. |-+|+.|+ ..|.-.
T Consensus 279 pGVLFIDEvHmLD-----iEcFsfLnralEs~~--sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-----lII~t~ 346 (398)
T PF06068_consen 279 PGVLFIDEVHMLD-----IECFSFLNRALESEL--SPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-----LIIRTK 346 (398)
T ss_dssp E-EEEEESGGGSB-----HHHHHHHHHHHTSTT----EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-----EEEEE-
T ss_pred cceEEecchhhcc-----HHHHHHHHHHhcCCC--CcEEEEecCceeeeccCccCcCCCCCCcchHhhc-----EEEECC
Confidence 4599999999883 467888889887632 23677777742 34566555 688999
Q ss_pred CCCHHHHHHHHhhcCC
Q 009415 254 ECTEDDLRQIFMRNQA 269 (535)
Q Consensus 254 pYt~~el~~IL~~~~~ 269 (535)
||+.+|+.+||.-++.
T Consensus 347 py~~~ei~~Il~iR~~ 362 (398)
T PF06068_consen 347 PYSEEEIKQILKIRAK 362 (398)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhh
Confidence 9999999999987764
No 171
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=2.4e-05 Score=80.50 Aligned_cols=167 Identities=12% Similarity=0.059 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCe-EEEeccccCCHHHHHHHHHHHHhhccccccCC
Q 009415 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPF-VYTSCLSCYSPRILFESILNQLLLHKKNAFNG 141 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~-~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g 141 (535)
.....+|...+.. +..++ ++++||.|+||+++++.+.+.+-... .--.|..|.+.+.+-. +.-++- .-
T Consensus 9 ~~~~~~l~~~~~~--~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~-------g~HPD~-~~ 78 (319)
T PRK06090 9 VPVWQNWKAGLDA--GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQS-------GNHPDL-HV 78 (319)
T ss_pred HHHHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHc-------CCCCCE-EE
Confidence 3455666666644 34565 88999999999999999999874321 1135777765543321 110110 00
Q ss_pred CCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccC
Q 009415 142 YSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK 221 (535)
Q Consensus 142 ~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~ 221 (535)
+...+....+. ++.++.+.+.+ .. ....+..-|+|||++|++.. +--.+|++.-|..+
T Consensus 79 i~p~~~~~~I~--vdqiR~l~~~~-~~--------------~~~~~~~kV~iI~~ae~m~~-----~AaNaLLKtLEEPp 136 (319)
T PRK06090 79 IKPEKEGKSIT--VEQIRQCNRLA-QE--------------SSQLNGYRLFVIEPADAMNE-----SASNALLKTLEEPA 136 (319)
T ss_pred EecCcCCCcCC--HHHHHHHHHHH-hh--------------CcccCCceEEEecchhhhCH-----HHHHHHHHHhcCCC
Confidence 00000011121 23344333221 10 01234556888999999953 34566777667754
Q ss_pred CCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 222 MPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 222 ~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
++..+|++++.+ .+.+.+|+ ..+.|++.+.+++.+.|....
T Consensus 137 -~~t~fiL~t~~~~~lLpTI~SRC-----q~~~~~~~~~~~~~~~L~~~~ 180 (319)
T PRK06090 137 -PNCLFLLVTHNQKRLLPTIVSRC-----QQWVVTPPSTAQAMQWLKGQG 180 (319)
T ss_pred -CCeEEEEEECChhhChHHHHhcc-----eeEeCCCCCHHHHHHHHHHcC
Confidence 578888888764 34455665 799999999999999998653
No 172
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=1.2e-05 Score=82.79 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCC
Q 009415 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGY 142 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~ 142 (535)
+....+|...+.. +..|+ ++++||+|+||++++..+++.+-..-. ..|..|.+.+. + . .+.-++- .-+
T Consensus 10 ~~~~~~l~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~-~~~~~c~~c~~-~----~--~g~HPD~-~~i 78 (319)
T PRK08769 10 QRAYDQTVAALDA--GRLGHGLLICGPEGLGKRAVALALAEHVLASGP-DPAAAQRTRQL-I----A--AGTHPDL-QLV 78 (319)
T ss_pred HHHHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC-CCCCcchHHHH-H----h--cCCCCCE-EEE
Confidence 3445666666654 35666 889999999999999999998743211 12333333221 1 0 0100100 000
Q ss_pred C-CCc-CCCC--hhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcccc
Q 009415 143 S-SAK-RCEK--PSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSD 218 (535)
Q Consensus 143 ~-~~~-r~~~--~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E 218 (535)
. .+. ..+. ..--++.++++.+.+.. ....+..-|+|||++|.|.. .--.+|++.-|
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~---------------~p~~g~~kV~iI~~ae~m~~-----~AaNaLLKtLE 138 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLAL---------------TPQYGIAQVVIVDPADAINR-----AACNALLKTLE 138 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhh---------------CcccCCcEEEEeccHhhhCH-----HHHHHHHHHhh
Confidence 0 000 0000 00113344444433211 01234566888999999953 34567777767
Q ss_pred ccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 219 ILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 219 ~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
..+ ++..+|++++.+ .+.+.+|+ ..|.|++.+.+++.+.|...
T Consensus 139 EPp-~~~~fiL~~~~~~~lLpTIrSRC-----q~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 139 EPS-PGRYLWLISAQPARLPATIRSRC-----QRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred CCC-CCCeEEEEECChhhCchHHHhhh-----eEeeCCCcCHHHHHHHHHHc
Confidence 754 577888888764 33455555 79999999999999999864
No 173
>PRK06526 transposase; Provisional
Probab=98.14 E-value=6e-06 Score=82.47 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=37.3
Q ss_pred CCCCCCCCccccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 36 SYIPTLGDLVFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 36 ~~~~~~~~~~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+...+++++-|...+..- ..++..|..+ .-.....+++|+||+|||||+++.++...+
T Consensus 65 p~~~~le~fd~~~~~~~~----------~~~~~~l~~~--~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 65 PARKSLEEFDFDHQRSLK----------RDTIAHLGTL--DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CCCCChhhccCccCCCcc----------hHHHHHHhcC--chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 444788888787554211 1234443321 111235689999999999999999998664
No 174
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.13 E-value=1.2e-05 Score=79.81 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=27.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
.+++++|++|||||+++.+++..+ +..++|++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 479999999999999999999987 45666764
No 175
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.09 E-value=0.00016 Score=73.80 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=65.0
Q ss_pred EEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC---------------ccccccCCCCCCCeeEecC
Q 009415 189 MIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---------------PDTYHSNTGYVAPIHVYFP 253 (535)
Q Consensus 189 ~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---------------~~~f~~~~g~~~p~~I~Fp 253 (535)
+=||++||++.|- -+.|..|.|..|.-- .-.+|+.+|.. |.+++.|. ..|.-.
T Consensus 292 pGVLFIDEvHmLD-----IE~FsFlnrAlEse~--aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-----lII~t~ 359 (450)
T COG1224 292 PGVLFIDEVHMLD-----IECFSFLNRALESEL--APIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-----LIISTR 359 (450)
T ss_pred cceEEEechhhhh-----HHHHHHHHHHhhccc--CcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-----eEEecC
Confidence 4589999999882 467888888766421 12455556542 33344443 578889
Q ss_pred CCCHHHHHHHHhhcCCChh--hhhHHHHhhhhccccccccHHHHHHHHHHhhhhhhhh
Q 009415 254 ECTEDDLRQIFMRNQANQK--LYSSFLDIVLRPFCRITKRVDELSTAFSLLFKRYCEP 309 (535)
Q Consensus 254 pYt~~el~~IL~~~~~~~~--l~~~f~~~vl~~~~~~~rdl~eL~~~~~~L~~~y~~P 309 (535)
||+++|+.+||.-+..-++ +-+.-++ -+. ....-..|+|..+.|=|.++-.
T Consensus 360 py~~~EireIi~iRa~ee~i~l~~~Ale----~L~-~ig~etSLRYa~qLL~pa~iiA 412 (450)
T COG1224 360 PYSREEIREIIRIRAKEEDIELSDDALE----YLT-DIGEETSLRYAVQLLTPASIIA 412 (450)
T ss_pred CCCHHHHHHHHHHhhhhhccccCHHHHH----HHH-hhchhhhHHHHHHhccHHHHHH
Confidence 9999999999997764222 2222222 111 1123456888888887777644
No 176
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.1e-05 Score=79.90 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=96.4
Q ss_pred hcCCChHHHHHHHHHHHhccC-----------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLN-----------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~-----------~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
..+-|=|.||.++.....-+. .++--+++||+||||||.+++++++.-...|..|-. ..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvG----------se 254 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVG----------SE 254 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhh----------HH
Confidence 357788999999988765421 123349999999999999999999876544433221 12
Q ss_pred HHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc--cc
Q 009415 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE--WD 204 (535)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~--~d 204 (535)
+++...++ .. .++.++ + ...+ ..-+-++++||+|.+.. .|
T Consensus 255 LiQkylGd---------------Gp-klvRql---F----~vA~---------------e~apSIvFiDEIdAiGtKRyd 296 (440)
T KOG0726|consen 255 LIQKYLGD---------------GP-KLVREL---F----RVAE---------------EHAPSIVFIDEIDAIGTKRYD 296 (440)
T ss_pred HHHHHhcc---------------ch-HHHHHH---H----HHHH---------------hcCCceEEeehhhhhcccccc
Confidence 22222221 11 122222 2 2111 12356888999999952 12
Q ss_pred C--------CCChHHHHHccccccCCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 205 K--------SSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 205 ~--------~~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
. ..++|..|..|.-+-.-..+.||+.+|.. .+.-+-|.|. ....|.||-.+...-..|+.-
T Consensus 297 s~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGr-IDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 297 SNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGR-IDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred CCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCc-cccccccCCCchhhhceeEEE
Confidence 1 13456556555433223469999988864 3344445552 335899998888877777653
No 177
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.08 E-value=3.2e-05 Score=80.23 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~ 118 (535)
.|+...+.++...+........+|+|+|++||||+++++.+-.... .+++.|||....
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 4556666666666665544567899999999999999998876543 689999998643
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.06 E-value=2.4e-05 Score=68.59 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC---eEEEeccccC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRP---FVYTSCLSCY 118 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~---~~yVnc~~~~ 118 (535)
..++|+||+|||||++++.++..+... +++++|....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 568999999999999999999998754 7888876543
No 179
>PRK08116 hypothetical protein; Validated
Probab=98.05 E-value=2.1e-05 Score=79.20 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=28.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
..++|||++|||||+++.++++.+ +.+++|++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 359999999999999999999876 577788874
No 180
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.03 E-value=0.00014 Score=87.58 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=93.9
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCC---eEEEecccc-CC--------------
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRP---FVYTSCLSC-YS-------------- 119 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~---~~yVnc~~~-~s-------------- 119 (535)
+.+.||+.++++|..++.........+-|+|++|+||||+++++...+... .++++.... .+
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~ 263 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNM 263 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccch
Confidence 468999999999999986543444568899999999999999999887532 244432100 00
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcc
Q 009415 120 PRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFEL 199 (535)
Q Consensus 120 ~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~ 199 (535)
.-.+-+.++.++.... +. +..... .+++.+ .+++++||||+++.
T Consensus 264 ~~~l~~~~l~~il~~~-----~~----~~~~~~----~~~~~L-----------------------~~krvLLVLDdv~~ 307 (1153)
T PLN03210 264 KLHLQRAFLSEILDKK-----DI----KIYHLG----AMEERL-----------------------KHRKVLIFIDDLDD 307 (1153)
T ss_pred hHHHHHHHHHHHhCCC-----Cc----ccCCHH----HHHHHH-----------------------hCCeEEEEEeCCCC
Confidence 0112223333332210 00 000110 111111 34689999999875
Q ss_pred cccccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 200 VREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 200 L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.. .+..|....++.+ +..+||+++.+. ......+.. ..+..+..+.+|..+++...
T Consensus 308 ~~-------~l~~L~~~~~~~~-~GsrIIiTTrd~--~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~ 363 (1153)
T PLN03210 308 QD-------VLDALAGQTQWFG-SGSRIIVITKDK--HFLRAHGID--HIYEVCLPSNELALEMFCRS 363 (1153)
T ss_pred HH-------HHHHHHhhCccCC-CCcEEEEEeCcH--HHHHhcCCC--eEEEecCCCHHHHHHHHHHH
Confidence 43 3455544445432 456778777764 333222221 35667778889999988754
No 181
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.1e-05 Score=82.54 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=79.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREAL 162 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l 162 (535)
.+++|||||||||.++.++....+..++-|...| ++++..|.. -++ .+.++
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE----------lL~KyIGaS------------Eq~-------vR~lF 753 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPE----------LLSKYIGAS------------EQN-------VRDLF 753 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH----------HHHHHhccc------------HHH-------HHHHH
Confidence 5999999999999999999999998888777544 334443321 001 22333
Q ss_pred HHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC------CCChHHHHH-ccccccCCCcEEEEEEeCCC-
Q 009415 163 INVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK------SSSILPFLF-GLSDILKMPEVGMIFISSTS- 234 (535)
Q Consensus 163 ~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~------~~~lL~~L~-rL~E~~~~~~l~vI~Is~~~- 234 (535)
++.+ ..+++|+++||+|.+....+ ...+...|+ .|.-.-++..+.|+..++.+
T Consensus 754 ----~rA~---------------~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 754 ----ERAQ---------------SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPD 814 (952)
T ss_pred ----HHhh---------------ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcc
Confidence 3221 33789999999999953211 123444333 33222123344454444443
Q ss_pred -ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 235 -PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 235 -~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.++-+-|.|-.. ..|+-+..++.|=.+||..
T Consensus 815 liDpALLRpGRlD-~~v~C~~P~~~eRl~il~~ 846 (952)
T KOG0735|consen 815 LIDPALLRPGRLD-KLVYCPLPDEPERLEILQV 846 (952)
T ss_pred ccCHhhcCCCccc-eeeeCCCCCcHHHHHHHHH
Confidence 222233555322 4777788888888888763
No 182
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.01 E-value=4.5e-05 Score=84.42 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=48.6
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
.+.|+...+.++...+........+|+|+|++||||+++++.+-... +.+++.|||...
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 56678888888888776654556789999999999999999998775 368999999875
No 183
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.00 E-value=0.00025 Score=74.73 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHH-HHHHHhcCCCeEEEeccccC---CHHHHHHHHHHHHhhcccc-
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHLSRPFVYTSCLSCY---SPRILFESILNQLLLHKKN- 137 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v-~~vl~~l~~~~~yVnc~~~~---s~r~l~~~Il~~L~~~~~~- 137 (535)
|.+.+.+|...|... +-..|+|+||.|+||+.+| ..+++.-. .+.||+|.... +-..+..++.++++-. |.
T Consensus 1 R~e~~~~L~~wL~e~--~~TFIvV~GPrGSGK~elV~d~~L~~r~-~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~-PvF 76 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN--PNTFIVVQGPRGSGKRELVMDHVLKDRK-NVLVIDCDQIVKARGDAAFIKNLASQVGYF-PVF 76 (431)
T ss_pred CchHHHHHHHHHhcC--CCeEEEEECCCCCCccHHHHHHHHhCCC-CEEEEEChHhhhccChHHHHHHHHHhcCCC-cch
Confidence 667788898888763 2235999999999999888 88887754 48899999764 4445777777766432 10
Q ss_pred -cc-----------CCCCCCcCC--CChhHHHHHHHHHHHHHHHhhhhhhhh--ccccc--------cccccCCcEEEEE
Q 009415 138 -AF-----------NGYSSAKRC--EKPSDFVIFVREALINVIDSLKENAEK--TSTSK--------LKGQVNGKMIYLI 193 (535)
Q Consensus 138 -~~-----------~g~~~~~r~--~~~~~f~~~L~~~l~~~~~~l~~~~~~--~s~~k--------~~~~~~~~~~vlV 193 (535)
|. .|....+.+ ++.. .+|+++|+.....|+..+-. ...++ |.+.......|||
T Consensus 77 sw~nSiss~IDLa~qGltGqKaGfSes~e---~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 77 SWMNSISSFIDLAVQGLTGQKAGFSESLE---TQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCChH---HHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 00 111111222 2332 24555555433344432211 00111 1111122346888
Q ss_pred EeCCcccccccCCCChHHHHHccccccCCCcE-EEEEEeCCC-ccccccCC-CCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 194 FDNFELVREWDKSSSILPFLFGLSDILKMPEV-GMIFISSTS-PDTYHSNT-GYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 194 LDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l-~vI~Is~~~-~~~f~~~~-g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
||++..-.+ ...-+...|..|.-.+-..|+ .|||++++. ..+-++.. ....-..|.+..-+.+--.+.+..+.
T Consensus 154 IdnF~~k~~--~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAE--ENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCc--ccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 999987643 323444556555433222243 688888774 11111111 11111477888888887777776543
No 184
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.00 E-value=3.6e-05 Score=79.01 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=29.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
..++||||++|||||+++.+++.++ +..+.|+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 4579999999999999999999887 567777765
No 185
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=2.3e-05 Score=81.07 Aligned_cols=169 Identities=16% Similarity=0.160 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE---EEeccccCCHHHHHHHHHHHHhhccccc-
Q 009415 64 RVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV---YTSCLSCYSPRILFESILNQLLLHKKNA- 138 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~---yVnc~~~~s~r~l~~~Il~~L~~~~~~~- 138 (535)
+....+|.... +..++ ++++||+|+|||++++.+.+.+....- ...|.+|.+.+.+-..-.-.+..-.+..
T Consensus 7 ~~~w~~l~~~~----~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~ 82 (325)
T PRK08699 7 QEQWRQIAEHW----ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD 82 (325)
T ss_pred HHHHHHHHHhc----CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc
Confidence 34445555442 24565 889999999999999999998853211 2357777665533211000000000000
Q ss_pred --cCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcc
Q 009415 139 --FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (535)
Q Consensus 139 --~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL 216 (535)
..| ++...+. ++.++++.+.+... ...+..-|+|+|+++.|.. ..-..|+++
T Consensus 83 ~~~~g----~~~~~I~--id~iR~l~~~~~~~---------------p~~~~~kV~iiEp~~~Ld~-----~a~naLLk~ 136 (325)
T PRK08699 83 EPENG----RKLLQIK--IDAVREIIDNVYLT---------------SVRGGLRVILIHPAESMNL-----QAANSLLKV 136 (325)
T ss_pred ccccc----ccCCCcC--HHHHHHHHHHHhhC---------------cccCCceEEEEechhhCCH-----HHHHHHHHH
Confidence 000 0000111 33444444332110 1123455667899999942 334555555
Q ss_pred ccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 217 SDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 217 ~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
-|..+ .+..+|++++.+ ++.+.+|+ ..+.|++.+.+++.+.|..+.
T Consensus 137 LEep~-~~~~~Ilvth~~~~ll~ti~SRc-----~~~~~~~~~~~~~~~~L~~~~ 185 (325)
T PRK08699 137 LEEPP-PQVVFLLVSHAADKVLPTIKSRC-----RKMVLPAPSHEEALAYLRERG 185 (325)
T ss_pred HHhCc-CCCEEEEEeCChHhChHHHHHHh-----hhhcCCCCCHHHHHHHHHhcC
Confidence 45433 467788888774 22333444 689999999999999997653
No 186
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.96 E-value=6.2e-05 Score=78.12 Aligned_cols=64 Identities=25% Similarity=0.237 Sum_probs=53.0
Q ss_pred hhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009415 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 57 ~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~ 124 (535)
...+.|++..+..+...+.. ..++++-|+||||||.+++.+.+.++.++..|+|....++..++
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~----~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 23 EKVVVGDEEVIELALLALLA----GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLL 86 (329)
T ss_pred CCeeeccHHHHHHHHHHHHc----CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhc
Confidence 34567788888777665554 57899999999999999999999999999999999887776443
No 187
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.95 E-value=2e-05 Score=79.21 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=93.8
Q ss_pred cccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009415 45 VFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 45 ~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~ 124 (535)
+-+.+|..+++++.+ ++-+..+.++.+. ...|+++.|||||||||+++.++.+.+-.++- ++
T Consensus 32 vekyrP~~l~dv~~~----~ei~st~~~~~~~--~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~-------~~----- 93 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQ----EPIWSTENRYSGM--PGLPHLLFYGPPGTGKTSTILANARDFYSPHP-------TT----- 93 (360)
T ss_pred ccCCCCchhhhHhcC----CchhhHHHHhccC--CCCCcccccCCCCCCCCCchhhhhhhhcCCCC-------ch-----
Confidence 345566666665544 4445555555332 35679999999999999999999998853321 11
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
..+.+|. .++..|.. -+. -+...-........ + ......-.|||||+|.+.. +
T Consensus 94 -~m~leln---aSd~rgid------~vr-----~qi~~fast~~~~~---------f--st~~~fKlvILDEADaMT~-~ 146 (360)
T KOG0990|consen 94 -SMLLELN---ASDDRGID------PVR-----QQIHLFASTQQPTT---------Y--STHAAFKLVILDEADAMTR-D 146 (360)
T ss_pred -hHHHHhh---ccCccCCc------chH-----HHHHHHHhhcccee---------c--cccCceeEEEecchhHhhH-H
Confidence 1122221 11122221 110 01011111010000 0 0012456778999999853 2
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
--.+|-|.-|-.. .|.++.+|++.+ -+...+|+ ..+.|.|.+..++..++...+
T Consensus 147 ----AQnALRRviek~t-~n~rF~ii~n~~~ki~pa~qsRc-----trfrf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 147 ----AQNALRRVIEKYT-ANTRFATISNPPQKIHPAQQSRC-----TRFRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred ----HHHHHHHHHHHhc-cceEEEEeccChhhcCchhhccc-----ccCCCCCCChhhhhhHHHHHH
Confidence 2345556555443 478888888775 22333444 578899999999888887544
No 188
>PRK06921 hypothetical protein; Provisional
Probab=97.90 E-value=3.5e-05 Score=77.53 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=28.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc 114 (535)
..+++++|++|||||+++.+++.++ +..++|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4679999999999999999999875 456677774
No 189
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.90 E-value=0.00014 Score=79.96 Aligned_cols=60 Identities=17% Similarity=0.347 Sum_probs=50.2
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.+.|+...++++...+........+|+|+|++||||+.+++.+-... +.+++.|||....
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 47788888888888887765566789999999999999999998775 3689999998764
No 190
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.1e-05 Score=78.71 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
..|++.||||||||.++++|..+-+..|..|...
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 3599999999999999999999988777766643
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=3.6e-05 Score=81.76 Aligned_cols=138 Identities=16% Similarity=0.264 Sum_probs=88.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
-+++++||||+|||+++-.+...-+.||+.|-..+. --|++...+|- ++.+.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~---------------------miG~sEsaKc~-------~i~k~ 590 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED---------------------MIGLSESAKCA-------HIKKI 590 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH---------------------ccCccHHHHHH-------HHHHH
Confidence 359999999999999999999999999987642221 12232222332 23333
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc-----CCCChHHHHHccccccCCCcEEEEEEeCCCcc
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-----KSSSILPFLFGLSDILKMPEVGMIFISSTSPD 236 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d-----~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~ 236 (535)
++. . .....-+||+|++++|.+|- ....+|++|.-+-.-.+-..-.+..++.+...
T Consensus 591 F~D---A----------------YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~ 651 (744)
T KOG0741|consen 591 FED---A----------------YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR 651 (744)
T ss_pred HHH---h----------------hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH
Confidence 332 1 13356789999999998772 12566777765433322122345555555555
Q ss_pred ccccCCC---CCCCeeEecCCCCH-HHHHHHHhhc
Q 009415 237 TYHSNTG---YVAPIHVYFPECTE-DDLRQIFMRN 267 (535)
Q Consensus 237 ~f~~~~g---~~~p~~I~FppYt~-~el~~IL~~~ 267 (535)
.++..++ ++. ..|+.|..+. +|+.+||...
T Consensus 652 ~vL~~m~i~~~F~-~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 652 EVLQEMGILDCFS-STIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred HHHHHcCHHHhhh-heeecCccCchHHHHHHHHHc
Confidence 6776665 332 4899999998 8999999854
No 192
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.89 E-value=2.4e-05 Score=73.90 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=26.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
...+++++|++|||||+++.+++.++ +..+.|++.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 45679999999999999999998765 677888874
No 193
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.86 E-value=0.00016 Score=74.96 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=47.9
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecccc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSC 117 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~ 117 (535)
.+.|+...+.++...+........+|+|.|.+||||+++++.+-.... .+++.|||...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~ 68 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCC
Confidence 567788888888887776555567899999999999999998876543 58999999874
No 194
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=7.6e-05 Score=81.83 Aligned_cols=137 Identities=14% Similarity=0.208 Sum_probs=78.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC----CeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSR----PFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVI 156 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~----~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~ 156 (535)
.++++|+||+|+|||.+++++++.+.- -+-+++|.+....+ +++|-.-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~-------------------------- 482 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKF-------------------------- 482 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHH--------------------------
Confidence 457999999999999999999999862 23477886543222 2222211
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc---cCC-----CChHHHHH-ccc-cccCC-CcE
Q 009415 157 FVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW---DKS-----SSILPFLF-GLS-DILKM-PEV 225 (535)
Q Consensus 157 ~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~---d~~-----~~lL~~L~-rL~-E~~~~-~~l 225 (535)
|+.++..-.. + .+-|||||++|.|..- +++ .+.+..++ .+. +..+. ..+
T Consensus 483 -l~~vfse~~~------------------~-~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~i 542 (952)
T KOG0735|consen 483 -LNNVFSEALW------------------Y-APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKI 542 (952)
T ss_pred -HHHHHHHHHh------------------h-CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEE
Confidence 2222222111 1 4678899999999531 111 22333333 222 22222 234
Q ss_pred EEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 226 GMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 226 ~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.||+.++.. ....+...+.++ .+++.|+....+=.+||..
T Consensus 543 a~Iat~qe~qtl~~~L~s~~~Fq-~~~~L~ap~~~~R~~IL~~ 584 (952)
T KOG0735|consen 543 AVIATGQELQTLNPLLVSPLLFQ-IVIALPAPAVTRRKEILTT 584 (952)
T ss_pred EEEEechhhhhcChhhcCccceE-EEEecCCcchhHHHHHHHH
Confidence 566655542 222222222333 5899999999998888874
No 195
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.85 E-value=0.00012 Score=82.08 Aligned_cols=178 Identities=12% Similarity=0.150 Sum_probs=112.8
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc--CCCeEEEecccc-CCHHHHHHHHHHHHhhc
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL--SRPFVYTSCLSC-YSPRILFESILNQLLLH 134 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l--~~~~~yVnc~~~-~s~r~l~~~Il~~L~~~ 134 (535)
.+..-|..-++.|.+.. ...-++|+-|.|.||||++-+..+.. +..+++++|.+. ..+..|++.++..|...
T Consensus 19 ~~~v~R~rL~~~L~~~~-----~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~ 93 (894)
T COG2909 19 DNYVVRPRLLDRLRRAN-----DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQA 93 (894)
T ss_pred ccccccHHHHHHHhcCC-----CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHh
Confidence 35555666665554421 23569999999999999999998643 467889999986 67888999999999865
Q ss_pred cccccCCCCCCcCCCChhHH-----HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCCh
Q 009415 135 KKNAFNGYSSAKRCEKPSDF-----VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSI 209 (535)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f-----~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~l 209 (535)
.+. .|++...+ ..-+..+++.++..+. ...+++++|||+.+++.+ +.+
T Consensus 94 ~p~---------~~~~a~~l~q~~~~~~l~~l~~~L~~Ela--------------~~~~pl~LVlDDyHli~~----~~l 146 (894)
T COG2909 94 TPT---------LGDEAQTLLQKHQYVSLESLLSSLLNELA--------------SYEGPLYLVLDDYHLISD----PAL 146 (894)
T ss_pred Ccc---------ccHHHHHHHHhcccccHHHHHHHHHHHHH--------------hhcCceEEEeccccccCc----ccH
Confidence 432 12221100 0012234444444332 234679999999999964 678
Q ss_pred HHHHHccccccCCCcEEEEEEeCCCccccccCC--C-CCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 210 LPFLFGLSDILKMPEVGMIFISSTSPDTYHSNT--G-YVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 210 L~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~--g-~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
-.+|-++-+..+ +|+++|++|...|.=.+.+. . ..--+--.--.++.+|..+.|..+.
T Consensus 147 ~~~l~fLl~~~P-~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 147 HEALRFLLKHAP-ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred HHHHHHHHHhCC-CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 888888888776 69999999987654322211 0 0000001112357788887776553
No 196
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.84 E-value=0.00027 Score=77.80 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=48.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh-----------cCCCeEEEeccccC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-----------LSRPFVYTSCLSCY 118 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~-----------l~~~~~yVnc~~~~ 118 (535)
.+.|....+.++...+........+|+|+|++||||+.+++.+-+. -+.+++.|||....
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 4777788888888877665445668999999999999999999876 23689999998754
No 197
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.84 E-value=7.9e-06 Score=76.71 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=34.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC----CeEEEeccccCC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSR----PFVYTSCLSCYS 119 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~----~~~yVnc~~~~s 119 (535)
..++++.||+|+|||.+++.+.+.+.. +++.+||.+...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 346899999999999999999999986 899999988765
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00017 Score=81.34 Aligned_cols=137 Identities=14% Similarity=0.248 Sum_probs=87.6
Q ss_pred HHhhcCCChHHHHHHHHHHHhcc-------CCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHH
Q 009415 55 DLLSRFPGRRVQILELLRLLGTL-------NSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~-------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~ 124 (535)
.+.+++.|=++-+..+.+.+... ..|.++.++.||+|+|||-+++++.+.|- ...+.+|..|+.-.
T Consensus 488 ~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 488 RLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK---- 563 (786)
T ss_pred HHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH----
Confidence 46678999999999999988663 12334577899999999999999999985 67788887664321
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
.-++.|.|.- +..-||.. +- .|. +.++ .++..||.|||+++--
T Consensus 564 -HsVSrLIGaP-PGYVGyee---GG-----------~LT---EaVR---------------r~PySViLlDEIEKAH--- 606 (786)
T COG0542 564 -HSVSRLIGAP-PGYVGYEE---GG-----------QLT---EAVR---------------RKPYSVILLDEIEKAH--- 606 (786)
T ss_pred -HHHHHHhCCC-CCCceecc---cc-----------chh---Hhhh---------------cCCCeEEEechhhhcC---
Confidence 2445565542 22233321 10 111 1111 2345688899999763
Q ss_pred CCCChHHHHHccccc---cC-------CCcEEEEEEeCCC
Q 009415 205 KSSSILPFLFGLSDI---LK-------MPEVGMIFISSTS 234 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~---~~-------~~~l~vI~Is~~~ 234 (535)
++++..|++.-+- +. -.|.-+|+.||..
T Consensus 607 --pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~G 644 (786)
T COG0542 607 --PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAG 644 (786)
T ss_pred --HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccc
Confidence 7888888766442 21 2345566677663
No 199
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.81 E-value=0.00026 Score=70.43 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=47.8
Q ss_pred EEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC------ccccccCCCCC-----CCeeEecCCCCH
Q 009415 189 MIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS------PDTYHSNTGYV-----APIHVYFPECTE 257 (535)
Q Consensus 189 ~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~------~~~f~~~~g~~-----~p~~I~FppYt~ 257 (535)
+=|+++||++.|. -+-|..|-+.-|.. + .-.|||.||.. .++..+..|.. .-..|.-.+|++
T Consensus 297 PGVLFIDEVhMLD-----iEcFTyL~kalES~-i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~ 369 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD-----IECFTYLHKALESP-I-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDE 369 (456)
T ss_pred CcceEeeehhhhh-----hHHHHHHHHHhcCC-C-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCH
Confidence 5589999999883 35666676666653 2 23678887752 12222222210 014788899999
Q ss_pred HHHHHHHhhcCC
Q 009415 258 DDLRQIFMRNQA 269 (535)
Q Consensus 258 ~el~~IL~~~~~ 269 (535)
+++.+|+..+..
T Consensus 370 ~e~r~Ii~~Ra~ 381 (456)
T KOG1942|consen 370 EEIRQIIKIRAQ 381 (456)
T ss_pred HHHHHHHHHHHh
Confidence 999999997764
No 200
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=4.6e-05 Score=76.32 Aligned_cols=59 Identities=25% Similarity=0.282 Sum_probs=44.4
Q ss_pred cCCChHHHHHHHHHHHhccC---------C-CCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 59 RFPGRRVQILELLRLLGTLN---------S-SMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~---------~-~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.+-|=-.|+.+|..-+.-+. + .+| -+.||||||||||.++++++..+++.++.+...+.
T Consensus 133 ~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred HhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 45556788888877664320 1 233 38899999999999999999999999988875443
No 201
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.00084 Score=65.93 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=93.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (535)
...+.|.|+-|||||.+.|+++..+. +..+||+. ...+...+.+.|...|.... +. ++......
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~-~~~s~~~~~~ai~~~l~~~p-----------~~-~~~~~~e~ 117 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDK-PTLSDATLLEAIVADLESQP-----------KV-NVNAVLEQ 117 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecC-cchhHHHHHHHHHHHhccCc-----------cc-hhHHHHHH
Confidence 45788999999999999997777764 33345553 23456678888888886421 11 22222222
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccC--CCcEEEEEEeCCCc
Q 009415 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK--MPEVGMIFISSTSP 235 (535)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~--~~~l~vI~Is~~~~ 235 (535)
....+..... ...+++++++||++.|. .+.+..|.++-+... ...+++++|+....
T Consensus 118 ~~~~L~al~~-----------------~g~r~v~l~vdEah~L~-----~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L 175 (269)
T COG3267 118 IDRELAALVK-----------------KGKRPVVLMVDEAHDLN-----DSALEALRLLTNLEEDSSKLLSIVLIGQPKL 175 (269)
T ss_pred HHHHHHHHHH-----------------hCCCCeEEeehhHhhhC-----hhHHHHHHHHHhhcccccCceeeeecCCccc
Confidence 2223322221 13356999999999985 355666666554432 12388999997642
Q ss_pred cc-cc----cCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 236 DT-YH----SNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 236 ~~-f~----~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.. .. ...+.+....|..+|||.++....|..+.
T Consensus 176 ~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~L 213 (269)
T COG3267 176 RPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRL 213 (269)
T ss_pred chhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHH
Confidence 21 11 11222222458899999999999887553
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0002 Score=80.82 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=97.0
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLH 134 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~ 134 (535)
+-+.|||+||+++...|... .-.|.++.|.||+|||++|.-++...- +|-.--++ +.++-. +..-+.+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR--~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~-~i~sLD-----~g~LvAGa 241 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRR--TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDK-RIYSLD-----LGSLVAGA 241 (786)
T ss_pred CCCcChHHHHHHHHHHHhcc--CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCC-EEEEec-----HHHHhccc
Confidence 45899999999999998663 234568899999999999999998752 32211111 000000 01111110
Q ss_pred cccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc--------ccCC
Q 009415 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE--------WDKS 206 (535)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~--------~d~~ 206 (535)
.-|+ +|.++|+.+++.+.+ .+ .+||+|||++.|.- +|+.
T Consensus 242 ----------kyRG----eFEeRlk~vl~ev~~------------------~~-~vILFIDEiHtiVGAG~~~G~a~DAa 288 (786)
T COG0542 242 ----------KYRG----EFEERLKAVLKEVEK------------------SK-NVILFIDEIHTIVGAGATEGGAMDAA 288 (786)
T ss_pred ----------cccC----cHHHHHHHHHHHHhc------------------CC-CeEEEEechhhhcCCCcccccccchh
Confidence 1122 678888888876522 23 79999999999963 2222
Q ss_pred CChHHHHHccccccCCCcEEEEEEeCCCccccc---cCC--CCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 207 SSILPFLFGLSDILKMPEVGMIFISSTSPDTYH---SNT--GYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 207 ~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~---~~~--g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+-+-++|.| ..+.+| +.+.++.|. ..- -.+..+.|....+|.++...||.--+
T Consensus 289 NiLKPaLAR-------GeL~~I--GATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 289 NLLKPALAR-------GELRCI--GATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhhHHHHhc-------CCeEEE--EeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 222244432 234444 444444443 111 12333689999999999999997543
No 203
>PRK09183 transposase/IS protein; Provisional
Probab=97.76 E-value=0.00012 Score=73.38 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCCCCCCCCccccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEE
Q 009415 35 DSYIPTLGDLVFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVY 111 (535)
Q Consensus 35 ~~~~~~~~~~~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~y 111 (535)
-+...+++++-|.-.+..-. .++..|..+- -.....+++|+||+|||||+++.++...+ +..+.|
T Consensus 68 ~p~~~~l~~fd~~~~~~~~~----------~~i~~L~~~~--~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 68 FPAVKTFEEYDFTFATGAPQ----------KQLQSLRSLS--FIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred CCCCCcHhhcccccCCCCCH----------HHHHHHhcCC--chhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34457788887775543211 2444443310 01235689999999999999999997553 566677
Q ss_pred Eec
Q 009415 112 TSC 114 (535)
Q Consensus 112 Vnc 114 (535)
+++
T Consensus 136 ~~~ 138 (259)
T PRK09183 136 TTA 138 (259)
T ss_pred EeH
Confidence 764
No 204
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.76 E-value=0.0001 Score=67.08 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=29.6
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
+.|+|++|+|||+++..++..+ +.+.+|+++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 5799999999999999999876 4678899886553
No 205
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00013 Score=74.91 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
+..|++|||||||||-+++++.++.+..++-|.....
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 4569999999999999999999999988887775443
No 206
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00015 Score=80.29 Aligned_cols=154 Identities=18% Similarity=0.284 Sum_probs=95.8
Q ss_pred cCCChHHHHHHHHHHHhccCCC-------CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLNSS-------MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~-------~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
.-++++.-+.++...+.+...+ .+.++++|+||||||++|++++++++..+.-|+|.+..+. -
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~----------s 471 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE----------S 471 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc----------c
Confidence 3577888888888988875322 2458899999999999999999999999999999664211 0
Q ss_pred hhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccc-cccCCCChH
Q 009415 132 LLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR-EWDKSSSIL 210 (535)
Q Consensus 132 ~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~-~~d~~~~lL 210 (535)
.. .. ...+..++.+.+ ...+.||+|-++|-+. +.|+ .+.+
T Consensus 472 ~~----------------~~-------etkl~~~f~~a~---------------~~~pavifl~~~dvl~id~dg-ged~ 512 (953)
T KOG0736|consen 472 AS----------------HT-------ETKLQAIFSRAR---------------RCSPAVLFLRNLDVLGIDQDG-GEDA 512 (953)
T ss_pred cc----------------hh-------HHHHHHHHHHHh---------------hcCceEEEEeccceeeecCCC-chhH
Confidence 00 11 112222222211 3368899999999885 2232 2222
Q ss_pred HHHHccc-----cccCCCcEEEEEEeCCC-----ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 211 PFLFGLS-----DILKMPEVGMIFISSTS-----PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 211 ~~L~rL~-----E~~~~~~l~vI~Is~~~-----~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
..+--++ |..+-+.-.+|+|++.. |..+.+- -+..|.++-.+++|=.+||+
T Consensus 513 rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~----f~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 513 RLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSL----FLHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred HHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHh----hhhhccCCCCCHHHHHHHHH
Confidence 2222121 22222345666666543 3333321 12588999999999888886
No 207
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.71 E-value=3.7e-05 Score=69.39 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
|+...++++..-+........+|+|+|++||||+++++.+-...+
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 444556666666555434456899999999999999998887655
No 208
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00036 Score=76.72 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=91.1
Q ss_pred CCChHHHHH---HHHHHHhccC------CCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHH
Q 009415 60 FPGRRVQIL---ELLRLLGTLN------SSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILN 129 (535)
Q Consensus 60 ~p~Re~qi~---~L~~ll~~~~------~~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~ 129 (535)
..|.|+... ++..+|..+. ...| -+.+.||||||||.++++++-+.++|+.+++..+....
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem--------- 222 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM--------- 222 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh---------
Confidence 455555544 4555555432 2344 49999999999999999999999999999885443211
Q ss_pred HHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC----
Q 009415 130 QLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK---- 205 (535)
Q Consensus 130 ~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~---- 205 (535)
. -|+. .+ +.++++.+ . ...-+++|+|||+|.+....+
T Consensus 223 -f--------VGvG-------As----RVRdLF~q---A----------------kk~aP~IIFIDEiDAvGr~Rg~g~G 263 (596)
T COG0465 223 -F--------VGVG-------AS----RVRDLFEQ---A----------------KKNAPCIIFIDEIDAVGRQRGAGLG 263 (596)
T ss_pred -h--------cCCC-------cH----HHHHHHHH---h----------------hccCCCeEEEehhhhcccccCCCCC
Confidence 1 1211 11 22333332 1 123468999999999954221
Q ss_pred -CC----ChHHHHHccccccC-CCcEEEEEEeCCCccccc----cCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 206 -SS----SILPFLFGLSDILK-MPEVGMIFISSTSPDTYH----SNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 206 -~~----~lL~~L~rL~E~~~-~~~l~vI~Is~~~~~~f~----~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+. ..|..|+ .|+=+ ..|-.||+|..+.+++.+ .|.|-+. .+|..+.++-..-.+||.-
T Consensus 264 ggnderEQTLNQlL--vEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFD-RqI~V~~PDi~gRe~Ilkv 331 (596)
T COG0465 264 GGNDEREQTLNQLL--VEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFD-RQILVELPDIKGREQILKV 331 (596)
T ss_pred CCchHHHHHHHHHH--hhhccCCCCCceEEEecCCCcccchHhhcCCCCcc-eeeecCCcchhhHHHHHHH
Confidence 01 1233322 23211 134567777776644443 3555333 5888888887777777763
No 209
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00027 Score=70.64 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=44.1
Q ss_pred CCCCCccccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 39 PTLGDLVFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 39 ~~~~~~~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
.+++.+-|...+.. +...+..+..+..... .+.+++++|+||||||+++-++..++ ++.+.|+++
T Consensus 74 k~~~~~d~~~~~~~----------~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 74 KTFEEFDFEFQPGI----------DKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCcccccccCCcch----------hHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 66777777666542 2344444554443322 45689999999999999999998876 466666664
No 210
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.68 E-value=0.00018 Score=74.42 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=28.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
..++++||++|||||+++.+++..+ +..++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 4689999999999999999999876 566777764
No 211
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.68 E-value=0.00017 Score=75.54 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=73.5
Q ss_pred HHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCC
Q 009415 68 LELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSA 145 (535)
Q Consensus 68 ~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~ 145 (535)
..+..+++... ..+..+||||+.|+|||.++..+.+.+.+.. ..+-++ -.+...+...|.....
T Consensus 47 ~~~~~~~~~~~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~---k~R~HF--h~Fm~~vh~~l~~~~~--------- 112 (362)
T PF03969_consen 47 SRLRKLFGRKPPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR---KRRVHF--HEFMLDVHSRLHQLRG--------- 112 (362)
T ss_pred HHHHHHhcCCccCCCCceEEEECCCCCchhHHHHHHHHhCCccc---cccccc--cHHHHHHHHHHHHHhC---------
Confidence 44555565321 2344599999999999999999999886421 011111 1344555555544320
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcE
Q 009415 146 KRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEV 225 (535)
Q Consensus 146 ~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l 225 (535)
..+.+ ..+.+.+.+ ..-+|+|||++-----| ..+|..|++. +. ..++
T Consensus 113 -~~~~l-------~~va~~l~~--------------------~~~lLcfDEF~V~DiaD--Amil~rLf~~--l~-~~gv 159 (362)
T PF03969_consen 113 -QDDPL-------PQVADELAK--------------------ESRLLCFDEFQVTDIAD--AMILKRLFEA--LF-KRGV 159 (362)
T ss_pred -CCccH-------HHHHHHHHh--------------------cCCEEEEeeeeccchhH--HHHHHHHHHH--HH-HCCC
Confidence 01122 223333221 34599999998542112 4555555542 11 2468
Q ss_pred EEEEEeCCCccccccC
Q 009415 226 GMIFISSTSPDTYHSN 241 (535)
Q Consensus 226 ~vI~Is~~~~~~f~~~ 241 (535)
.+|..||.+|++++.+
T Consensus 160 vlVaTSN~~P~~Ly~~ 175 (362)
T PF03969_consen 160 VLVATSNRPPEDLYKN 175 (362)
T ss_pred EEEecCCCChHHHcCC
Confidence 8999999999998853
No 212
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.67 E-value=0.00038 Score=74.57 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=61.6
Q ss_pred hhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 57 ~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
...+.|+...+.+|...+.....+.-+|+|+|.+||||-.+++++=+.-. -+|+.|||..+. ..+++ +.|.|
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip--~~l~E---SELFG 214 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP--ENLLE---SELFG 214 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC--HHHHH---HHhhc
Confidence 34789999999999999988666667899999999999999999887754 599999998764 22333 33667
Q ss_pred ccccccCC
Q 009415 134 HKKNAFNG 141 (535)
Q Consensus 134 ~~~~~~~g 141 (535)
+.+....|
T Consensus 215 hekGAFTG 222 (464)
T COG2204 215 HEKGAFTG 222 (464)
T ss_pred ccccCcCC
Confidence 76554444
No 213
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00041 Score=73.06 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccC-----C-CC-CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 65 VQILELLRLLGTLN-----S-SM-PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 65 ~qi~~L~~ll~~~~-----~-~~-~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
.-++.|..++.... + +- ..-++||||||||||.|.++++.|+..++-++..+
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~ 270 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE 270 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc
Confidence 34455666665421 1 11 24679999999999999999999998887777544
No 214
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00014 Score=77.41 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=63.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC-eEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRP-FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~-~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (535)
.-+++|||||||||.++|++=..|+.+ .-.||..+ ||++..+.. -++ +++
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe----------IL~KYVGeS------------E~N-------vR~ 307 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE----------ILNKYVGES------------EEN-------VRK 307 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH----------HHHHhhccc------------HHH-------HHH
Confidence 348999999999999999999998633 22356543 455554431 112 222
Q ss_pred HHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC--------CCChHHHHH-ccccccCCCcEEEEEEe
Q 009415 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK--------SSSILPFLF-GLSDILKMPEVGMIFIS 231 (535)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~--------~~~lL~~L~-rL~E~~~~~~l~vI~Is 231 (535)
++....+.-+.. ......+|||+||+|.+....+ +.++...|+ ++.-.-.+.|+-||..+
T Consensus 308 LFaDAEeE~r~~-----------g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMT 376 (744)
T KOG0741|consen 308 LFADAEEEQRRL-----------GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMT 376 (744)
T ss_pred HHHhHHHHHHhh-----------CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEecc
Confidence 222111110000 1233578899999999953211 234555544 44322124578888888
Q ss_pred CCC
Q 009415 232 STS 234 (535)
Q Consensus 232 ~~~ 234 (535)
|..
T Consensus 377 NR~ 379 (744)
T KOG0741|consen 377 NRK 379 (744)
T ss_pred Cch
Confidence 763
No 215
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.64 E-value=0.00038 Score=67.14 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=34.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~ 125 (535)
+..+.|+|+||+|||+++.+++.+. +.+.+||++.+ .++..+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHH
Confidence 3458899999999999999888643 57899999976 55554444
No 216
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.63 E-value=6.7e-05 Score=67.43 Aligned_cols=42 Identities=29% Similarity=0.492 Sum_probs=37.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~ 124 (535)
+|+|+||||||||++++.+++.++.++..++|....+...|+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccce
Confidence 479999999999999999999999999999999888876555
No 217
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.62 E-value=0.00048 Score=73.91 Aligned_cols=53 Identities=15% Similarity=0.326 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcc---CCCC--CCeEEECCCCCCHHHHHHHHHHhcCCCeE-EEecccc
Q 009415 65 VQILELLRLLGTL---NSSM--PPLFVYGSASTGKTSIIIQVFRHLSRPFV-YTSCLSC 117 (535)
Q Consensus 65 ~qi~~L~~ll~~~---~~~~--~~l~I~G~~GTGKTs~v~~vl~~l~~~~~-yVnc~~~ 117 (535)
+-|.++...|... .... ..++|+||+|+||||+|+-+.+.+++.+. ++|-+.+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~ 147 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINL 147 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccc
Confidence 3445555555521 1222 35899999999999999999999998766 5554444
No 218
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.61 E-value=0.00056 Score=78.10 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=46.6
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.+.|+...+..+...+........+|+|.|++|||||.+++.+-... +.+++.|||....
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 439 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC
Confidence 46677777777766665544455689999999999999999998754 3689999998753
No 219
>PTZ00494 tuzin-like protein; Provisional
Probab=97.61 E-value=0.003 Score=66.65 Aligned_cols=196 Identities=12% Similarity=0.072 Sum_probs=115.2
Q ss_pred HhhcCCChHHHHHHHHHHHhccC-CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhc
Q 009415 56 LLSRFPGRRVQILELLRLLGTLN-SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLH 134 (535)
Q Consensus 56 l~~~~p~Re~qi~~L~~ll~~~~-~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~ 134 (535)
..+.+..|+.|-..+...|.... ..+..+++.|..|+||+++.+..++.-+.+.++|+.... ..-+..|+..|+-
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~---EDtLrsVVKALgV- 444 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGT---EDTLRSVVRALGV- 444 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCC---cchHHHHHHHhCC-
Confidence 34678899999888888887653 345568899999999999999999999999999986543 2235667777743
Q ss_pred cccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCC--cEEEEEEeCCcccccccCCCChHHH
Q 009415 135 KKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNG--KMIYLIFDNFELVREWDKSSSILPF 212 (535)
Q Consensus 135 ~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~--~~~vlVLDe~d~L~~~d~~~~lL~~ 212 (535)
.+...|-..-+|+. +.+... + ....+ +.+|+=|-|-..|. .+...
T Consensus 445 --------~nve~CGDlLdFI~---ea~~~A----~------------~~~~g~~P~lVlkLREGssL~------RVYnE 491 (664)
T PTZ00494 445 --------SNVEVCGDLLGFVE---EAMRGA----T------------VKASDGVPFLVMRLREGSDLG------RVYGE 491 (664)
T ss_pred --------CChhhhccHHHHHH---HHHHHH----H------------HhcCCCCCEEEEEeccCCcHH------HHHHH
Confidence 23445666655554 233221 0 00122 33444344444442 12221
Q ss_pred HHccccccCCCcEEEEEEeCC-----CccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhcccc
Q 009415 213 LFGLSDILKMPEVGMIFISST-----SPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCR 287 (535)
Q Consensus 213 L~rL~E~~~~~~l~vI~Is~~-----~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~~ 287 (535)
..-|.. ..++|.|.+--. +....+++. -....|+++..|..+..+..- ++.-..+|++. .-.
T Consensus 492 ~vaLac---DrRlCHvv~EVplESLT~~n~~LPRL-----DFy~VPnFSr~QAf~YtqH~l-Dal~l~~Fvev----vGT 558 (664)
T PTZ00494 492 VVSLVS---DCQACHIVLAVPMKALTPLNVSSRRL-----DFYCIPPFSRRQAFAYAEHTL-DALDLVCFVEV----VGT 558 (664)
T ss_pred HHHHHc---cchhheeeeechHhhhchhhccCccc-----eeEecCCcCHHHHHHHHhccc-chhhhhhhhhh----hcC
Confidence 111111 235666654211 111122233 245679999999999987443 32223356553 334
Q ss_pred ccccHHHHHHHHHH
Q 009415 288 ITKRVDELSTAFSL 301 (535)
Q Consensus 288 ~~rdl~eL~~~~~~ 301 (535)
...|+.||..+..+
T Consensus 559 nSnDlDEL~AAv~q 572 (664)
T PTZ00494 559 RSSDVDELCAALRQ 572 (664)
T ss_pred CcccHHHHHHHHHH
Confidence 55689888877654
No 220
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.60 E-value=0.00067 Score=66.77 Aligned_cols=38 Identities=32% Similarity=0.289 Sum_probs=31.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSP 120 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~ 120 (535)
.-.++||+|||||.+++.+.+.+|..++..||.+..+.
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~ 71 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY 71 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH
Confidence 34689999999999999999999999999999876543
No 221
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.59 E-value=5.5e-05 Score=76.36 Aligned_cols=137 Identities=18% Similarity=0.297 Sum_probs=69.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC-C--eEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSR-P--FVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~-~--~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (535)
..++++.||+|||||++++.+++.+.- . ...++|....++..+ +.++++-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~-q~~ie~~-------------------------- 85 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQL-QKIIESK-------------------------- 85 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHH-HHCCCTT--------------------------
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHH-HHHHhhc--------------------------
Confidence 457999999999999999999988752 3 334565443333321 1111100
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc-CCCChHHHHHccccc---c--------CCCcE
Q 009415 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-KSSSILPFLFGLSDI---L--------KMPEV 225 (535)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d-~~~~lL~~L~rL~E~---~--------~~~~l 225 (535)
.++.+++.+ +.+.++.+|++||++..-..-. +.+..+..|-.+-+. . .+.++
T Consensus 86 ---------------l~k~~~~~~-gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i 149 (272)
T PF12775_consen 86 ---------------LEKRRGRVY-GPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDI 149 (272)
T ss_dssp ---------------ECECTTEEE-EEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSE
T ss_pred ---------------EEcCCCCCC-CCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeee
Confidence 000111111 1245678999999999774211 223333333222221 1 13345
Q ss_pred EEEEEeCCC------ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 226 GMIFISSTS------PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 226 ~vI~Is~~~------~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
.+|...+.. +.+|++.. ..++++.++.+++..|..
T Consensus 150 ~~vaa~~p~~Gr~~is~R~~r~f-----~i~~~~~p~~~sl~~If~ 190 (272)
T PF12775_consen 150 QFVAAMNPTGGRNPISPRFLRHF-----NILNIPYPSDESLNTIFS 190 (272)
T ss_dssp EEEEEESSTTT--SHHHHHHTTE-----EEEE----TCCHHHHHHH
T ss_pred EEEEecCCCCCCCCCChHHhhhe-----EEEEecCCChHHHHHHHH
Confidence 555544321 22444333 578899999999999876
No 222
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.57 E-value=0.00086 Score=74.00 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=46.8
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.+.|....+.++...+........+|+|+|.+||||+.+++++-... .-+++.|||....
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 67788888877777766544456689999999999999999975443 2589999998754
No 223
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00015 Score=72.27 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.-+++|||||||||.++++|..+-+..|..|+.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSS 199 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 199 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeeh
Confidence 359999999999999999999998877766653
No 224
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.51 E-value=0.001 Score=75.40 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=48.7
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~ 118 (535)
.+.|+...+.++...+........+|+|+|++||||+++++++-+... .+++.|||....
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~ 388 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP 388 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence 466788888888777766545566799999999999999999987653 689999998764
No 225
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.00053 Score=69.63 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHHHHHHHHHHhhccccccCC
Q 009415 65 VQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRILFESILNQLLLHKKNAFNG 141 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~--yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g 141 (535)
..+..|...+.. +..++ .+++|+ +||+++++.+.+.+-.... --.|..|.+.+.+.. +.-++ ...
T Consensus 9 ~~~~~L~~~~~~--~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~-------~~HPD-~~~ 76 (290)
T PRK07276 9 KVFQRFQTILEQ--DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQ-------GEFSD-VTV 76 (290)
T ss_pred HHHHHHHHHHHc--CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc-------CCCCC-eee
Confidence 345566666654 34555 678995 7899999999988743221 124666765543332 11011 000
Q ss_pred CCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccC
Q 009415 142 YSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK 221 (535)
Q Consensus 142 ~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~ 221 (535)
+. + .+..+. ++.++++...+.. ....+..-|+|||++|++.. .--.+|++.-|-.+
T Consensus 77 i~-p-~~~~I~--idqIR~l~~~~~~---------------~p~~~~~kV~II~~ad~m~~-----~AaNaLLKtLEEPp 132 (290)
T PRK07276 77 IE-P-QGQVIK--TDTIRELVKNFSQ---------------SGYEGKQQVFIIKDADKMHV-----NAANSLLKVIEEPQ 132 (290)
T ss_pred ec-C-CCCcCC--HHHHHHHHHHHhh---------------CcccCCcEEEEeehhhhcCH-----HHHHHHHHHhcCCC
Confidence 00 0 011111 2334444433211 01134456888999999963 33466777667754
Q ss_pred CCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 222 MPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 222 ~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
++..+|++++.+ .+.+.+|+ ..|+|++ +.+++.++|....
T Consensus 133 -~~t~~iL~t~~~~~lLpTI~SRc-----q~i~f~~-~~~~~~~~L~~~g 175 (290)
T PRK07276 133 -SEIYIFLLTNDENKVLPTIKSRT-----QIFHFPK-NEAYLIQLLEQKG 175 (290)
T ss_pred -CCeEEEEEECChhhCchHHHHcc-----eeeeCCC-cHHHHHHHHHHcC
Confidence 567788888663 33455555 7999988 8999999998654
No 226
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00057 Score=78.82 Aligned_cols=138 Identities=21% Similarity=0.240 Sum_probs=78.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCC--CChhHHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRC--EKPSDFVIFVRE 160 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~--~~~~~f~~~L~~ 160 (535)
-+++|||||||||.+++++..+... ....-.+|. .. | ..| .++.+--+.|+.
T Consensus 301 gvL~~GppGTGkTl~araLa~~~s~---------~~~kisffm------rk-------g----aD~lskwvgEaERqlrl 354 (1080)
T KOG0732|consen 301 GVLFHGPPGTGKTLMARALAAACSR---------GNRKISFFM------RK-------G----ADCLSKWVGEAERQLRL 354 (1080)
T ss_pred ceeecCCCCCchhHHHHhhhhhhcc---------cccccchhh------hc-------C----chhhccccCcHHHHHHH
Confidence 3999999999999999999976531 111101111 00 0 011 122222334444
Q ss_pred HHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc-----cc-CCCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE-----WD-KSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~-----~d-~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
+++.. ....+.||.+||||=|.. ++ -...+...|+-|..-++ ..-.||+|+.+.
T Consensus 355 lFeeA-------------------~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-sRgqVvvigATn 414 (1080)
T KOG0732|consen 355 LFEEA-------------------QKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-SRGQVVVIGATN 414 (1080)
T ss_pred HHHHH-------------------hccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-CCCceEEEcccC
Confidence 44321 144789999999995521 11 12456666666655443 234566666553
Q ss_pred -ccc---cccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 235 -PDT---YHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 235 -~~~---f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
++. -+.|.|-+. ..++||-.+.+.=.+||.-+
T Consensus 415 Rpda~dpaLRRPgrfd-ref~f~lp~~~ar~~Il~Ih 450 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFD-REFYFPLPDVDARAKILDIH 450 (1080)
T ss_pred CccccchhhcCCcccc-eeEeeeCCchHHHHHHHHHh
Confidence 222 234555333 58999999999888888754
No 227
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0004 Score=75.94 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=81.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVR 159 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~ 159 (535)
++..+++|||||||||-++++++++.+..+.+|||.+.. ..+.+. +- ..|+
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli----------~k~~gE---------------te----~~LR 267 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELI----------SKFPGE---------------TE----SNLR 267 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHH----------Hhcccc---------------hH----HHHH
Confidence 344699999999999999999999999888899986543 223221 11 1355
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc-cC----CCChHHHHHccccccC-CCcEEEEEEeCC
Q 009415 160 EALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-DK----SSSILPFLFGLSDILK-MPEVGMIFISST 233 (535)
Q Consensus 160 ~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~-d~----~~~lL~~L~rL~E~~~-~~~l~vI~Is~~ 233 (535)
++++.-.. ...+.+|.+||+|.|... ++ ...+...|+.|.+..+ ..++.||..++.
T Consensus 268 ~~f~~a~k------------------~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnr 329 (693)
T KOG0730|consen 268 KAFAEALK------------------FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNR 329 (693)
T ss_pred HHHHHHhc------------------cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCC
Confidence 55543211 122788999999999521 11 1345566777766654 234555555554
Q ss_pred C--ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 234 S--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 234 ~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
+ .+.=+.| |- -+..+..--.+.++-.+||.
T Consensus 330 p~sld~alRR-gR-fd~ev~IgiP~~~~RldIl~ 361 (693)
T KOG0730|consen 330 PDSLDPALRR-GR-FDREVEIGIPGSDGRLDILR 361 (693)
T ss_pred ccccChhhhc-CC-CcceeeecCCCchhHHHHHH
Confidence 3 1122233 42 22455555566665555554
No 228
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.45 E-value=0.0011 Score=72.71 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=42.3
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccC-C--CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLN-S--SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~-~--~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
.|..+++|.=. .+-+.++...|.... . ....++++||+||||||+|+.++++++..+..
T Consensus 14 ~P~~~~eLavh----kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 14 APKTLDELAVH----KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCCCHHHhhcc----HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 45566654322 456677777776532 1 23358899999999999999999999987764
No 229
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.00036 Score=69.35 Aligned_cols=148 Identities=11% Similarity=0.060 Sum_probs=85.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREAL 162 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l 162 (535)
.++++|+.|+||..++.++++.+-..-..-.|..|.+.+.+-.... ++-. -.......-. ++..+++.
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~H-------PDl~-~i~p~~~~I~----id~ir~l~ 76 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKY-------NDFY-LIFDQKNPIK----KEDALSII 76 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCC-------CCEE-EecCCcccCC----HHHHHHHH
Confidence 3889999999999999999988743221124777776653322110 1000 0000001112 22333333
Q ss_pred HHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccc
Q 009415 163 INVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYH 239 (535)
Q Consensus 163 ~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~ 239 (535)
+.+ .. +....++.-|+|||++|++.. +--.+|++.-|-.+ ++..+|++++.+ ++.+.
T Consensus 77 ~~l-~~-------------~s~e~~~~KV~II~~ae~m~~-----~AaNaLLK~LEEPp-~~t~fiLit~~~~~lLpTI~ 136 (261)
T PRK05818 77 NKL-NR-------------PSVESNGKKIYIIYGIEKLNK-----QSANSLLKLIEEPP-KNTYGIFTTRNENNILNTIL 136 (261)
T ss_pred HHH-cc-------------CchhcCCCEEEEeccHhhhCH-----HHHHHHHHhhcCCC-CCeEEEEEECChHhCchHhh
Confidence 332 10 001123456778999999953 45677788777754 678888888764 44555
Q ss_pred cCCCCCCCeeEecCCC----------CHHHHHHHHhhc
Q 009415 240 SNTGYVAPIHVYFPEC----------TEDDLRQIFMRN 267 (535)
Q Consensus 240 ~~~g~~~p~~I~FppY----------t~~el~~IL~~~ 267 (535)
+|+ ..++|++. ++.++.++|...
T Consensus 137 SRC-----q~~~~~~~~~~~~~~~~~~~~~i~~~L~~~ 169 (261)
T PRK05818 137 SRC-----VQYVVLSKEKKVPFKVESNDRYFQYILLSF 169 (261)
T ss_pred hhe-----eeeecCChhhhcccccccChHHHHHHHHHc
Confidence 665 67888888 666667666644
No 230
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.41 E-value=0.0017 Score=64.13 Aligned_cols=148 Identities=18% Similarity=0.302 Sum_probs=77.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccCCHHHHHHHHHHH-HhhccccccCCCCCCcCCCChhHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCYSPRILFESILNQ-LLLHKKNAFNGYSSAKRCEKPSDFVIFVR 159 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~~s~r~l~~~Il~~-L~~~~~~~~~g~~~~~r~~~~~~f~~~L~ 159 (535)
.++|-|++|||||+++..++..+. ..++++-|.+.. ...+.-|... +... ....+ +.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n--~~~~~~i~p~~i~~~--------------~~~e~----le 74 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYN--NEYYKYIWPDHIFKV--------------FDKEE----LE 74 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCc--hhhhhhcchhhcccc--------------ccHHH----HH
Confidence 589999999999999999999876 456666554221 1122222111 1000 01111 11
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC---cc
Q 009415 160 EALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PD 236 (535)
Q Consensus 160 ~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~ 236 (535)
..+....+.++.... ++.......+++||||++-.- .. ....+..++.-..+ -++.+|++++.. |.
T Consensus 75 ~~l~~~k~~I~k~~~-----k~~~~k~~~~~LiIlDD~~~~-~~--k~~~l~~~~~~gRH---~~is~i~l~Q~~~~lp~ 143 (241)
T PF04665_consen 75 YILIRQKEKIEKYIK-----KSPQKKNNPRFLIILDDLGDK-KL--KSKILRQFFNNGRH---YNISIIFLSQSYFHLPP 143 (241)
T ss_pred HHHHHHHHHHHHHhh-----hhcccCCCCCeEEEEeCCCCc-hh--hhHHHHHHHhcccc---cceEEEEEeeecccCCH
Confidence 112111111110000 000111345789999998641 11 13455555543333 479999999774 44
Q ss_pred ccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 237 TYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 237 ~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
....+.. ..+.| +.+..++..|+..
T Consensus 144 ~iR~n~~----y~i~~-~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 144 NIRSNID----YFIIF-NNSKRDLENIYRN 168 (241)
T ss_pred HHhhcce----EEEEe-cCcHHHHHHHHHh
Confidence 4443332 34556 4788888877764
No 231
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.37 E-value=0.0015 Score=63.72 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=34.6
Q ss_pred HHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---C------CCeEEEeccccCCHH
Q 009415 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---S------RPFVYTSCLSCYSPR 121 (535)
Q Consensus 73 ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~------~~~~yVnc~~~~s~r 121 (535)
+|+.+...+..+.|+|+||+|||+++..++... + ..++||++.....+.
T Consensus 11 ~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~ 68 (226)
T cd01393 11 LLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPE 68 (226)
T ss_pred HhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHH
Confidence 343333334458899999999999999988653 2 677899987655543
No 232
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.36 E-value=0.001 Score=64.63 Aligned_cols=47 Identities=30% Similarity=0.309 Sum_probs=34.1
Q ss_pred HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.+++.+...+..+.|+|+||+|||+++.+++.+. +.+++|+++.+..
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred HHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 3444333334458899999999999999988664 5688999876544
No 233
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.36 E-value=0.00056 Score=72.03 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=89.2
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh----cCCCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH----LSRPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~----l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
+.|=.....++..-+.......-+++|.|++||||+.+++.+-.. .+-+++.+||......-...+ |.|+.
T Consensus 80 LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~e-----LFG~~ 154 (403)
T COG1221 80 LIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAE-----LFGHE 154 (403)
T ss_pred hhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHH-----Hhccc
Confidence 333344444444444332223557999999999999888777632 356899999998764433222 66665
Q ss_pred ccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHc
Q 009415 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (535)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~r 215 (535)
+....|... .+.. .+ +. ..+. .|.|||+..|. ..+...|++
T Consensus 155 kGaftGa~~----~k~G--------lf----e~----------------A~GG--tLfLDEI~~LP-----~~~Q~kLl~ 195 (403)
T COG1221 155 KGAFTGAQG----GKAG--------LF----EQ----------------ANGG--TLFLDEIHRLP-----PEGQEKLLR 195 (403)
T ss_pred cceeecccC----CcCc--------hh----ee----------------cCCC--EEehhhhhhCC-----HhHHHHHHH
Confidence 544444211 1110 12 11 1222 57799999985 455566666
Q ss_pred cccc---c------C-CCcEEEEEEeCCCccc-ccc--CCCC-CCCeeEecCCCCHHHHHHHH
Q 009415 216 LSDI---L------K-MPEVGMIFISSTSPDT-YHS--NTGY-VAPIHVYFPECTEDDLRQIF 264 (535)
Q Consensus 216 L~E~---~------~-~~~l~vI~Is~~~~~~-f~~--~~g~-~~p~~I~FppYt~~el~~IL 264 (535)
..|. . + ..++.+|+.++..+++ ++. ..-. ..+..|+.||...= ..+|+
T Consensus 196 ~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER-~~Di~ 257 (403)
T COG1221 196 VLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRER-KEDIL 257 (403)
T ss_pred HHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhc-hhhHH
Confidence 5443 1 1 2356677766654332 222 1111 34578999997764 44444
No 234
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.36 E-value=0.0011 Score=73.05 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=47.8
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.+.|....+.++...+........+|+|.|.+||||+.+++.+-... +.+++.|||....
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 46677788888877776544455689999999999999999998654 3689999998754
No 235
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.35 E-value=0.00036 Score=80.16 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=99.6
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHH
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALI 163 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~ 163 (535)
+.++|+||.|||+.+..++..++..++-.|.-.+.|.+.+++.+.+.+..+. +..+.. ..
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~s---------------i~~~~~----~~- 419 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHS---------------IKGSKK----KK- 419 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccc---------------hhhhhc----cc-
Confidence 5799999999999999999999999999999999999999988887664331 111000 00
Q ss_pred HHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC---cccccc
Q 009415 164 NVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHS 240 (535)
Q Consensus 164 ~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~ 240 (535)
..- ....+..+||++||+|-+..-| ...+..+..+.+-+ ..-+|+++|+. .-+-+.
T Consensus 420 ---~~~-------------~~~~~~~~vil~devD~~~~~d--Rg~v~~l~~l~~ks---~~Piv~~cndr~~p~sr~~~ 478 (871)
T KOG1968|consen 420 ---GNR-------------QSLNSDHFLILMDEVDGMFGED--RGGVSKLSSLCKKS---SRPLVCTCNDRNLPKSRALS 478 (871)
T ss_pred ---ccc-------------cccccceeEEEEeccccccchh--hhhHHHHHHHHHhc---cCCeEEEecCCCCccccchh
Confidence 000 0113467899999999997634 56777777766642 45688888874 212222
Q ss_pred CCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 241 NTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 241 ~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+.+ ..++|+..+.+++..-|+.-.
T Consensus 479 ~~~----~~l~f~kP~~~~i~~ri~si~ 502 (871)
T KOG1968|consen 479 RAC----SDLRFSKPSSELIRSRIMSIC 502 (871)
T ss_pred hhc----ceeeecCCcHHHHHhhhhhhh
Confidence 332 589999999999988887543
No 236
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34 E-value=0.0012 Score=62.10 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=30.7
Q ss_pred eEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHH
Q 009415 84 LFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
++|+|+||||||+++..++.. -+.+++|+...+ ++..+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC--CHHHHHHH
Confidence 689999999999999888764 357888998644 44444443
No 237
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00046 Score=69.52 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=33.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
-+++++.||+|+|||.+++.+++.|++||+..+|.+.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 3689999999999999999999999999999887553
No 238
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.31 E-value=0.002 Score=63.73 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=39.2
Q ss_pred HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHH
Q 009415 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
|=.+|+.+..++..++|+|+||+|||+++.+++.+ -+.+.+||...+ ++..+.+.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHH
Confidence 33445554445556999999999999988887754 267899999755 56555554
No 239
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.28 E-value=0.00059 Score=66.73 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=67.5
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhhcccc-ccCCC----C-CCc-C-
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLLHKKN-AFNGY----S-SAK-R- 147 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~-~~~g~----~-~~~-r- 147 (535)
.+..++|.|+||||||+++.+++.+- +.+++||...+ +++.+.+..- ++.-.... ..+|. . ... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee--~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE--PPEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC--CHHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 44569999999999999988877432 78999998644 3344444322 22110000 00110 0 001 1
Q ss_pred --CCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcE
Q 009415 148 --CEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEV 225 (535)
Q Consensus 148 --~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l 225 (535)
..++.++...+.+.++.. +.-+||||.+..+.....+..+...+..+.......++
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~----------------------~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~ 152 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEEL----------------------KPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGV 152 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHH----------------------TSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTE
T ss_pred ccccCHHHHHHHHHHHHHhc----------------------CCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 345566655555544321 22588899999983222223333334444444333467
Q ss_pred EEEEEeCC
Q 009415 226 GMIFISST 233 (535)
Q Consensus 226 ~vI~Is~~ 233 (535)
++|+++..
T Consensus 153 t~llt~~~ 160 (226)
T PF06745_consen 153 TTLLTSEM 160 (226)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcc
Confidence 78887763
No 240
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.27 E-value=0.00077 Score=67.13 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=36.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCC------eEEEeccccCCHHHHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRP------FVYTSCLSCYSPRILFESILN 129 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~------~~yVnc~~~~s~r~l~~~Il~ 129 (535)
.+..+.|.|++|+|||++++.+++.+... ++++-.....+...+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~ 70 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKG 70 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhcc
Confidence 34568999999999999999999887642 233333334678888888743
No 241
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.26 E-value=0.0021 Score=76.14 Aligned_cols=167 Identities=21% Similarity=0.347 Sum_probs=98.8
Q ss_pred HHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCC
Q 009415 71 LRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEK 150 (535)
Q Consensus 71 ~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~ 150 (535)
.+....+....-+++|.||.++|||+.+..+.+..+.+++.||--++..... .| |.-....+|.- +
T Consensus 878 ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqe---Yi-----GTyvTdd~G~l------s 943 (4600)
T COG5271 878 LNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQE---YI-----GTYVTDDDGSL------S 943 (4600)
T ss_pred HHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHH---Hh-----hceeecCCCce------e
Confidence 3333333223446999999999999999999999999999999777654321 11 11111123310 1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccc----c------
Q 009415 151 PSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDI----L------ 220 (535)
Q Consensus 151 ~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~----~------ 220 (535)
+.+ .++ ++.++ +-..|||||... ++.++|.+|.||-+- .
T Consensus 944 FkE------GvL---VeAlR-----------------~GyWIVLDELNL-----ApTDVLEaLNRLLDDNRelfIPETqe 992 (4600)
T COG5271 944 FKE------GVL---VEALR-----------------RGYWIVLDELNL-----APTDVLEALNRLLDDNRELFIPETQE 992 (4600)
T ss_pred eeh------hHH---HHHHh-----------------cCcEEEeecccc-----CcHHHHHHHHHhhccccceecCCcce
Confidence 111 111 12221 336888999974 357899999987532 1
Q ss_pred ---CCCcEEEEEEeCCCccccccCCC----CC-CCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccc
Q 009415 221 ---KMPEVGMIFISSTSPDTYHSNTG----YV-APIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFC 286 (535)
Q Consensus 221 ---~~~~l~vI~Is~~~~~~f~~~~g----~~-~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~ 286 (535)
++|+.. +|.++.||--|--|-+ .+ .-..+||..-.++|+..||..++ .+.++|+..++.++.
T Consensus 993 vV~PHp~F~-lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh~rc---~iapSyakKiVeVyr 1062 (4600)
T COG5271 993 VVVPHPNFR-LFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILHGRC---EIAPSYAKKIVEVYR 1062 (4600)
T ss_pred eeccCCCee-EEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHhccC---ccCHHHHHHHHHHHH
Confidence 133322 3344444332211111 00 01589999999999999999887 444566666666554
No 242
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.26 E-value=0.002 Score=63.13 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=35.9
Q ss_pred HHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHH
Q 009415 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRIL 123 (535)
Q Consensus 73 ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r~l 123 (535)
+|+.+...+..+.|+|+||+|||+++.+++... +..++||++.+..+++.+
T Consensus 11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 11 LLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred hccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 344433344457899999999999999997542 257899998775555433
No 243
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00099 Score=70.48 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
++..+++.||||||||.++++++.+.+..+..|.+.+
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcceEeeccHHH
Confidence 4456999999999999999999999998888877543
No 244
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.23 E-value=0.0016 Score=63.58 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=29.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~ 115 (535)
.+..+.|+|+||+|||+++.+++.+. +.+++||.+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33458899999999999999998643 6789999987
No 245
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0065 Score=62.14 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=52.6
Q ss_pred CcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 187 GKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 187 ~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+..-|+|||++|.+.+ .-..+|++.-|-.+ ++..+|++++.+ ..+++...+ ....+.|.|.+.+++.+.|..
T Consensus 89 ~~~KvvII~~~e~m~~-----~a~NaLLK~LEEPp-~~t~~il~~~~~-~kll~TI~S-Rc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 89 SQKKILIIKNIEKTSN-----SLLNALLKTIEEPP-KDTYFLLTTKNI-NKVLPTIVS-RCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred CCceEEEEecccccCH-----HHHHHHHHHhhCCC-CCeEEEEEeCCh-HhChHHHHh-CeEEEECCCCCHHHHHHHHHH
Confidence 4667888999999853 34456777667654 578888888753 555542221 127999999999999999986
Q ss_pred cC
Q 009415 267 NQ 268 (535)
Q Consensus 267 ~~ 268 (535)
..
T Consensus 161 ~~ 162 (299)
T PRK07132 161 KN 162 (299)
T ss_pred cC
Confidence 53
No 246
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.22 E-value=0.00054 Score=66.29 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.|...+..++... ...+|+||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 46777777776652 248899999999998888888776
No 247
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.20 E-value=0.0015 Score=68.28 Aligned_cols=62 Identities=10% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccc-cCCHHHHHHHHHHHHh
Q 009415 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLS-CYSPRILFESILNQLL 132 (535)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~-----~~~~yVnc~~-~~s~r~l~~~Il~~L~ 132 (535)
+..++.+. ..+.-..|.|++|||||++++.+++.+. +.++++-+.+ ..+...+++.+...+.
T Consensus 123 vID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vv 190 (380)
T PRK12608 123 VVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVY 190 (380)
T ss_pred hhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEE
Confidence 44444432 3345689999999999999999998763 2234444443 4577889988887554
No 248
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.17 E-value=0.00033 Score=61.16 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=25.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
++|.|+||+||||+++.+.+.++++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999986665443
No 249
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.16 E-value=0.0025 Score=65.67 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh---------cCCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH---------LSRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~---------l~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
.+|+.+...+..+-|+|+||+|||+++.+++-. .+-+.+||+.-+..++..+.+ +...+
T Consensus 87 ~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 87 GILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERF 154 (313)
T ss_pred HHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHc
Confidence 344543333444779999999999999887632 246889999887777766544 34444
No 250
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00067 Score=70.86 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=33.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.++++-||+|+|||.+++.+++-|++|++..+|.+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtL 262 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTL 262 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccch
Confidence 579999999999999999999999999999999664
No 251
>PRK10536 hypothetical protein; Provisional
Probab=97.16 E-value=0.0033 Score=62.51 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh-c-C--CCeEEE
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L-S--RPFVYT 112 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~-l-~--~~~~yV 112 (535)
+..|......+...+.. ...+++.|++|||||+++.++..+ + + +..++|
T Consensus 57 i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 57 ILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34455555555555544 358999999999999999988763 3 2 444554
No 252
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.16 E-value=0.0035 Score=67.95 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
+.|....+.++...+........+++|.|.+||||+++++.+-... +.+++.|||...
T Consensus 136 lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~ 196 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAI 196 (463)
T ss_pred eeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCC
Confidence 4444455555555554433334569999999999999988887664 368999999876
No 253
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.14 E-value=0.0036 Score=68.08 Aligned_cols=59 Identities=22% Similarity=0.435 Sum_probs=45.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecccc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSC 117 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~ 117 (535)
.+.|+...+..+...+........+++|.|.+|||||++++.+-.... .+++.|||...
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~ 200 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI 200 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC
Confidence 466677777777776655434456799999999999999998887653 68999999765
No 254
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.13 E-value=0.0018 Score=66.64 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~ 120 (535)
..+..+.|+||||||||+++.+++.+. +-+++||++-+..++
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH
Confidence 344458899999999999988877553 578899998765544
No 255
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.09 E-value=0.0012 Score=69.18 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.++|.|.||||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37899999999999999999988
No 256
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.08 E-value=0.0033 Score=61.93 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=38.4
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLL 132 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~Il~~L~ 132 (535)
.++..++|.|+||+|||+++.+++.+. +.+++|+++-+ ++..+..+++....
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~~~~~~ 66 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRLLASES 66 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHHHHHhc
Confidence 344468899999999999988887653 67899999755 45566666655443
No 257
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.06 E-value=0.004 Score=64.81 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=39.3
Q ss_pred HhccCCCCCCeEEECCCCCCHHHHHHHHHHh---------cCCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 74 LGTLNSSMPPLFVYGSASTGKTSIIIQVFRH---------LSRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 74 l~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~---------l~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
|+.+...+...-|+|+||||||+++.+++-. ++-.++||+.-+..++..|.+ +...+
T Consensus 119 LgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 119 LGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERF 184 (344)
T ss_pred cCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHc
Confidence 4443333334669999999999999888632 235789999888778876655 34444
No 258
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.06 E-value=0.0026 Score=63.86 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=33.8
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhc
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+..-++.-+..+...+......-|- +-+||.+||||..+.+.+++++
T Consensus 86 GQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 86 GQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred chHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 34444556666666666665433233 5589999999999999999886
No 259
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.03 E-value=0.0054 Score=63.36 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=39.2
Q ss_pred HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHH
Q 009415 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r~l~~ 125 (535)
|-.+|+.+...+..+.|+|+||+|||+++.+++-.. +.+.+||++.+..++..+.+
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 334444432333347799999999999999988652 34799999988777765544
No 260
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.02 E-value=0.0033 Score=64.83 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=32.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSP 120 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~ 120 (535)
.+..+.||||||+|||+++..++.+ .+-.++||++-+...+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHH
Confidence 3445789999999999999988854 4678999998765554
No 261
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.013 Score=59.40 Aligned_cols=146 Identities=10% Similarity=0.067 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCC
Q 009415 65 VQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYS 143 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~ 143 (535)
....+|.+.+.. +..++ .+++||.|+||++++..+.+.+- |...... ...+.+ +.-|+-. -+
T Consensus 4 ~~~~~L~~~i~~--~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll-------C~~~~~~---c~~~~~---~~HPD~~-~i- 66 (290)
T PRK05917 4 AAWEALIQRVRD--QKVPSAIILHGQDLSNLSARAYELASLIL-------KETSPEA---AYKISQ---KIHPDIH-EF- 66 (290)
T ss_pred HHHHHHHHHHHc--CCcCeeEeeECCCCCcHHHHHHHHHHHHh-------CCCCccH---HHHHhc---CCCCCEE-EE-
Confidence 345566666655 34566 56999999999999999998773 3210000 011111 1001100 00
Q ss_pred CCcC-CCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCC
Q 009415 144 SAKR-CEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKM 222 (535)
Q Consensus 144 ~~~r-~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~ 222 (535)
.+.. ...+. ++..+++...+-. ....+..-|+|||++|++.. +--.+|++.-|..+
T Consensus 67 ~p~~~~~~I~--idqiR~l~~~~~~---------------~p~e~~~kv~ii~~ad~mt~-----~AaNaLLK~LEEPp- 123 (290)
T PRK05917 67 SPQGKGRLHS--IETPRAIKKQIWI---------------HPYESPYKIYIIHEADRMTL-----DAISAFLKVLEDPP- 123 (290)
T ss_pred ecCCCCCcCc--HHHHHHHHHHHhh---------------CccCCCceEEEEechhhcCH-----HHHHHHHHHhhcCC-
Confidence 0000 00111 2334433333211 01234566888999999963 34567777777754
Q ss_pred CcEEEEEEeCCC---ccccccCCCCCCCeeEecCCC
Q 009415 223 PEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPEC 255 (535)
Q Consensus 223 ~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppY 255 (535)
+++.+|++++.+ ++.+.+|+ ..++|++.
T Consensus 124 ~~~~fiL~~~~~~~ll~TI~SRc-----q~~~~~~~ 154 (290)
T PRK05917 124 QHGVIILTSAKPQRLPPTIRSRS-----LSIHIPME 154 (290)
T ss_pred CCeEEEEEeCChhhCcHHHHhcc-----eEEEccch
Confidence 578888888774 34455555 68888865
No 262
>PRK05973 replicative DNA helicase; Provisional
Probab=96.99 E-value=0.0044 Score=61.20 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=34.3
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~I 127 (535)
++..++|.|+||+|||+++.+++.+. +.+.+|+.+-+ ++..+.++.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC--CHHHHHHHH
Confidence 34458899999999999988887643 67888997644 355566554
No 263
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.98 E-value=0.0025 Score=67.10 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=36.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCC-----eEEEeccc-cCCHHHHHHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRP-----FVYTSCLS-CYSPRILFESILNQL 131 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~-----~~yVnc~~-~~s~r~l~~~Il~~L 131 (535)
.+..+.|.||+|+|||++++.+.+.+... .+++...+ ..+...+++.|+..+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~V 224 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEV 224 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceE
Confidence 34568999999999999999999986533 22222222 357778888876543
No 264
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.97 E-value=0.0075 Score=65.07 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=45.0
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~ 118 (535)
.+.++...+.++...+........+++|.|++||||+++++.+-.... .+++.|||....
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~ 202 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP 202 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC
Confidence 356666777777766654333456799999999999999999876543 579999998763
No 265
>PTZ00035 Rad51 protein; Provisional
Probab=96.97 E-value=0.0061 Score=63.49 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHH
Q 009415 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRI 122 (535)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r~ 122 (535)
|=.+|+.+...+..+.|+|++|+|||+++..++-.. +-..+||+.....++..
T Consensus 107 LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er 168 (337)
T PTZ00035 107 LDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER 168 (337)
T ss_pred HHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH
Confidence 334455433344457799999999999999887432 34678999876656554
No 266
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.96 E-value=0.017 Score=56.51 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=38.3
Q ss_pred cCCChHHHHHHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009415 59 RFPGRRVQILELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVn 113 (535)
.+.|-|.|-+.|..-...-. .+..++++||..|||||++|++++.++. .+.+.|+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~ 120 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD 120 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 45566777766665433321 2445799999999999999999998874 4444444
No 267
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.92 E-value=0.0073 Score=59.40 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=36.8
Q ss_pred HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHH
Q 009415 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
.+|+.+...+..++|+|+||||||+++.+++.. -+.+++|+...+ +++.+.+.
T Consensus 16 ~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~--~~~~~~~~ 71 (234)
T PRK06067 16 RKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN--TSKSYLKQ 71 (234)
T ss_pred HhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC--CHHHHHHH
Confidence 344443334456889999999999999999754 257889998754 44444443
No 268
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.92 E-value=0.0013 Score=71.07 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=35.2
Q ss_pred HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009415 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (535)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~ 116 (535)
|=.+|+.+..++..++|+|+||+|||+++.+++... +.+++|+...+
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 334455443444568899999999999999998765 56889998754
No 269
>PRK06696 uridine kinase; Validated
Probab=96.92 E-value=0.0019 Score=63.22 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009415 62 GRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~ 120 (535)
.|++.+.+|+..+.......+. |.|.|++|+||||+++.+.+.| +.+++.+.+...+-+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 4788889999888653223343 7799999999999999999998 566777777766543
No 270
>PRK04328 hypothetical protein; Provisional
Probab=96.91 E-value=0.0086 Score=59.67 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHH
Q 009415 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~r~l~~ 125 (535)
.+|+.+...+..++|+|+||||||++..+++.+ -+.+.+||+..+ ++..+.+
T Consensus 14 ~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~ 68 (249)
T PRK04328 14 EILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRR 68 (249)
T ss_pred HHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHH
Confidence 444443334456899999999999998887754 257889999765 4544433
No 271
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.91 E-value=0.0061 Score=61.14 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=33.3
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+..++|+|+||||||+++.+++.+ .+.+.+|+...+ +...+++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee--~~~~~~~~l 83 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES--PANFVYTSL 83 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC--CchHHHHHH
Confidence 3445889999999999999988754 357899998753 334444444
No 272
>PRK04296 thymidine kinase; Provisional
Probab=96.88 E-value=0.0012 Score=62.90 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=23.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
..+|+|++|+|||+.+..++..+ +.++++++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46899999999998888888765 34555553
No 273
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.87 E-value=0.0085 Score=61.63 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=38.7
Q ss_pred HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHH
Q 009415 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r~l~~ 125 (535)
.+|+.+...+..+.|+|+||+|||+++.+++-.. +-+.+||++-+..++..+.+
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 4445433333447799999999999999988652 24789999887777765544
No 274
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.86 E-value=0.0077 Score=55.93 Aligned_cols=66 Identities=18% Similarity=0.109 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHH-HHHHHHHhcCC---CeEEEeccccCCHHHHHHHHHHHH
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTS-IIIQVFRHLSR---PFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs-~v~~vl~~l~~---~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
-|+.|..-+..++... ..++|.|++|||||. ++..+++.+.. ..+.+-|........++..+...+
T Consensus 9 ~~~~Q~~~~~~~~~~~----~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 9 LRPYQKEAIEALLSGL----RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred CCHHHHHHHHHHHcCC----CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 3567776666665431 579999999999998 55555555542 233333433333334455544444
No 275
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.85 E-value=0.0028 Score=55.24 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.++|+|++|+|||.++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 57999999999998888887665
No 276
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.82 E-value=0.0082 Score=64.55 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=29.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.++++|++|+||||++..++..+ +.+++.|.|....
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 48899999999999999998766 4678888886653
No 277
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.81 E-value=0.005 Score=61.79 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=37.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
++..++|.|+||+|||+++.+++..+ +.+++|+.+-+ +...+..+++..+.+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~~ 84 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLLGQYAG 84 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHHHHHhC
Confidence 34568899999999999999887653 67888998755 445566666555443
No 278
>PRK09354 recA recombinase A; Provisional
Probab=96.81 E-value=0.0076 Score=62.71 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=35.2
Q ss_pred HHh-ccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCH
Q 009415 73 LLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSP 120 (535)
Q Consensus 73 ll~-~~~~~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~ 120 (535)
+|+ .+...+..+.|+||+|||||+++..++.+ .+-.++||++-+...+
T Consensus 51 ~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 51 ALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred HhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH
Confidence 344 33333445779999999999999988854 4678999998765554
No 279
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.81 E-value=0.0032 Score=70.46 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=32.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC----C--CeEEEeccccCCHHHHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS----R--PFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~----~--~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
+..+|.|+||||||++++.++..+. . ..+++-+.+..-+..|-+++-..+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 4689999999999999999987751 1 234444444444444555554433
No 280
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.80 E-value=0.014 Score=56.97 Aligned_cols=47 Identities=26% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh-c--CCCeEEEeccc
Q 009415 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L--SRPFVYTSCLS 116 (535)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~-l--~~~~~yVnc~~ 116 (535)
|=.+++.....+..+.|.|+||+|||+++.+++.+ + +.+.+|+++.+
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 33444443345557999999999999998877643 2 46788998743
No 281
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.80 E-value=0.013 Score=63.47 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=42.0
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
+.+....+..+...+........+++|+|++||||+++++.+-... +.+++.|||....
T Consensus 145 ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~ 206 (457)
T PRK11361 145 ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP 206 (457)
T ss_pred eecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence 3444455555555544433345679999999999999999987654 3689999998753
No 282
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0012 Score=59.75 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=27.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
.|+|+|.|.|||||||+..++.+.++++++-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~ 37 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIE 37 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEe
Confidence 5799999999999999999999999877643
No 283
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.79 E-value=0.0022 Score=57.52 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
++++.++...|.....+...+++.|+.|+|||++++.+++.++.
T Consensus 5 ~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35677777777765444556889999999999999999999984
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.78 E-value=0.0065 Score=59.82 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=36.2
Q ss_pred HHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009415 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 73 ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.++.....+..+.|.|++|||||+++.+++..+ +.+.+|+.+.+ ++..+.+..
T Consensus 16 ~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 16 RLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred hhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC--CHHHHHHHH
Confidence 333333344568999999999999976666543 57888998544 555666655
No 285
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.77 E-value=0.0035 Score=58.81 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=35.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQ 130 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~ 130 (535)
.++|.|+||+|||+.+..++..++.+++|+...... ....-++|-..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~-~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF-DDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC-hHHHHHHHHHH
Confidence 479999999999999999999988888888765533 22344455433
No 286
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.74 E-value=0.0042 Score=69.29 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
...+|.|+||||||+++..++..+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998765
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=96.73 E-value=0.0027 Score=59.33 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=29.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
-|+|.|++|+||||+++.+.+.++++++.+++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999998887753
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.69 E-value=0.0017 Score=68.50 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=34.3
Q ss_pred HHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009415 71 LRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (535)
Q Consensus 71 ~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~ 116 (535)
=+.|+.+..++..++|+|+||+|||+++.+++..+ +.+++||+..+
T Consensus 72 D~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 72 DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred HHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 34455443445568999999999999999998765 35788998754
No 289
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.69 E-value=0.019 Score=61.20 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=36.2
Q ss_pred cCCChHHHHHHHHHHHhccCCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
...-|..-+.++...+.. .| .++|+||-.+||||+++.+.+.+.-..+|+|-
T Consensus 18 ~~~~~~~~~~~l~~~~~~----~~~i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~ 70 (398)
T COG1373 18 WEIERRKLLPRLIKKLDL----RPFIILILGPRQVGKTTLLKLLIKGLLEEIIYINF 70 (398)
T ss_pred HhhhHHhhhHHHHhhccc----CCcEEEEECCccccHHHHHHHHHhhCCcceEEEEe
Confidence 344444444555554433 34 78999999999999998888877544788873
No 290
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.69 E-value=0.072 Score=54.86 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=24.5
Q ss_pred HHHHHHHhccC--CCCCCeEEECCCCCCHHHHHHHHHHh
Q 009415 68 LELLRLLGTLN--SSMPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 68 ~~L~~ll~~~~--~~~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+|.+.|.... .+...++|+|++|||||+++.+++..
T Consensus 8 ~el~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 46 (309)
T PF10236_consen 8 LELINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHY 46 (309)
T ss_pred HHHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34445454432 23345999999999999777777643
No 291
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.68 E-value=0.0083 Score=62.51 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=38.8
Q ss_pred HhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 74 LGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 74 l~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
|+.+...+..+.|+|+||+|||+++..++-.. +-+++||++-+..++..+. .|.+.+
T Consensus 116 L~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~ 181 (342)
T PLN03186 116 LEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERF 181 (342)
T ss_pred hcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHc
Confidence 34433344457799999999999998777431 2378999998877776553 344444
No 292
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.66 E-value=0.0089 Score=65.45 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHH
Q 009415 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~ 126 (535)
..|=.+|+....++..++|.|+||||||++..+++... +.+.+|+...| ++..+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC--CHHHHHHH
Confidence 34445566654555669999999999999999999754 57889998655 44444444
No 293
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.66 E-value=0.0019 Score=57.31 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=23.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
+++|+|+||+|||++++++.+.++..+..|.|.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence 478999999999999999999999999888874
No 294
>PRK15115 response regulator GlrR; Provisional
Probab=96.63 E-value=0.02 Score=61.74 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
+.++...+.++...........++++|+|++|||||++++.+-+.. +.+++.|||...
T Consensus 136 lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~ 196 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGAL 196 (444)
T ss_pred ccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCC
Confidence 4455555555555444333345679999999999999999887764 368999999875
No 295
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.62 E-value=0.0044 Score=63.63 Aligned_cols=111 Identities=19% Similarity=0.262 Sum_probs=63.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHH-HHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR-ILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r-~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (535)
..+|+||+-|.|||.++..+.+.+...- .-.... .+...+-+.+.... |. .+.+ ..
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~------k~R~HFh~FM~~vH~~l~~l~-----g~-----~dpl-------~~ 122 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGER------KRRLHFHRFMARVHQRLHTLQ-----GQ-----TDPL-------PP 122 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCccc------cccccHHHHHHHHHHHHHHHc-----CC-----CCcc-------HH
Confidence 3599999999999999999999886322 001111 23344444444332 11 1111 11
Q ss_pred HHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCcccccc
Q 009415 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHS 240 (535)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~ 240 (535)
+.+++. +..-||+|||++-= +. +...||.-|+. ++.. .+|.+|..||..|+.++.
T Consensus 123 iA~~~~--------------------~~~~vLCfDEF~Vt-DI-~DAMiL~rL~~--~Lf~-~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 123 IADELA--------------------AETRVLCFDEFEVT-DI-ADAMILGRLLE--ALFA-RGVVLVATSNTAPDNLYK 177 (367)
T ss_pred HHHHHH--------------------hcCCEEEeeeeeec-Ch-HHHHHHHHHHH--HHHH-CCcEEEEeCCCChHHhcc
Confidence 222221 24569999999832 11 11344444432 3332 478899999999998875
No 296
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.59 E-value=0.008 Score=62.08 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=35.7
Q ss_pred HHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHH
Q 009415 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRI 122 (535)
Q Consensus 73 ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r~ 122 (535)
+|+.+..++..+.|+|+||+|||+++..++... +...+||++.+..++..
T Consensus 88 ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 88 LLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER 146 (316)
T ss_pred HhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH
Confidence 344433344457899999999999999887531 13679999888766654
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=96.58 E-value=0.024 Score=58.89 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=28.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
.+.+.|++|+||||++..++..+ +.++++++|...
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 37799999999999999888765 466777887654
No 298
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0024 Score=58.61 Aligned_cols=40 Identities=23% Similarity=0.411 Sum_probs=33.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
+-|.|+|||||||+.+.+.++++.+++ +...+|..+....
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~v--------saG~iFR~~A~e~ 42 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLV--------SAGTIFREMARER 42 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCcee--------eccHHHHHHHHHc
Confidence 569999999999999999999997774 4556777777665
No 299
>PRK13695 putative NTPase; Provisional
Probab=96.58 E-value=0.0023 Score=59.89 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=42.0
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC-----ccccccCCCCCCCeeEecCCCCHHHHHH
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS-----PDTYHSNTGYVAPIHVYFPECTEDDLRQ 262 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~-----~~~f~~~~g~~~p~~I~FppYt~~el~~ 262 (535)
.+-+|+|||+..+...+ ..+...+..+.+. +.++|++++.. .+++..+.+. ..+++.+=+++++..
T Consensus 96 ~~~~lllDE~~~~e~~~--~~~~~~l~~~~~~----~~~~i~v~h~~~~~~~~~~i~~~~~~---~i~~~~~~~r~~~~~ 166 (174)
T PRK13695 96 EADVIIIDEIGKMELKS--PKFVKAVEEVLDS----EKPVIATLHRRSVHPFVQEIKSRPGG---RVYELTPENRDSLPF 166 (174)
T ss_pred CCCEEEEECCCcchhhh--HHHHHHHHHHHhC----CCeEEEEECchhhHHHHHHHhccCCc---EEEEEcchhhhhHHH
Confidence 34568999976553222 3444555444432 46888888863 2233333332 578888888888877
Q ss_pred HHhh
Q 009415 263 IFMR 266 (535)
Q Consensus 263 IL~~ 266 (535)
.+..
T Consensus 167 ~~~~ 170 (174)
T PRK13695 167 EILN 170 (174)
T ss_pred HHHH
Confidence 6653
No 300
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.57 E-value=0.01 Score=55.37 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=29.3
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
+.+.|++|+|||+++..++..+ +.++++|+|....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 5789999999999999988765 5788899987643
No 301
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.51 E-value=0.015 Score=67.77 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-C-----CeEEEeccccCCHHHHHHHHHHHHhhc
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-R-----PFVYTSCLSCYSPRILFESILNQLLLH 134 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~-~-----~~~yVnc~~~~s~r~l~~~Il~~L~~~ 134 (535)
.|.|.-++.+.+.|-... ...+-|||.-|.||||+++.+.++.. + .+++|....-.+.+.+.+.|+..++..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 889999999999887632 24678999999999999999999875 2 234444445678899999999999753
No 302
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.49 E-value=0.022 Score=60.53 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
....++..|.+++.= .+..-|+++.||+|||||++..++...
T Consensus 191 ~~r~k~~~L~rl~~f-ve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 191 EARQKLLLLARLLPL-VEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred ChHHHHHHHHhhHHH-HhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 456777777776322 123468999999999999999876643
No 303
>PF13479 AAA_24: AAA domain
Probab=96.49 E-value=0.006 Score=59.30 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=25.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.++|||+||+|||+++..+ -+.++|+|..-
T Consensus 5 ~~lIyG~~G~GKTt~a~~~-----~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL-----PKPLFIDTENG 34 (213)
T ss_pred EEEEECCCCCCHHHHHHhC-----CCeEEEEeCCC
Confidence 5899999999999998888 56778887543
No 304
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.48 E-value=0.015 Score=56.67 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh-c--CCCeEEEeccccCCHHHHHHH
Q 009415 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L--SRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~-l--~~~~~yVnc~~~~s~r~l~~~ 126 (535)
.+++.+..++..+.|.|+||+|||+++..++.. + +.+.+|++..+ ++..+.+.
T Consensus 7 ~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 7 EMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE--REERILGY 62 (224)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHH
Confidence 344433333445889999999999998888754 2 67889998765 44444443
No 305
>PF13245 AAA_19: Part of AAA domain
Probab=96.48 E-value=0.0025 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=17.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.++|.||||||||+++...+..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 346679999999996655555443
No 306
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.44 E-value=0.022 Score=57.25 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=33.3
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccCC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCYS 119 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~~s 119 (535)
.+..++|-|+||||||+++-.+.+.|+ .+|.-|...+.+|
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S 106 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS 106 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee
Confidence 456799999999999999999999997 5777777766664
No 307
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.025 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=22.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.++|.|+||+||||++..+.+.|.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHH
Confidence 489999999999999999998875
No 308
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=96.43 E-value=0.01 Score=61.73 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=35.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccCCHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~~s~r~l~~~ 126 (535)
.+..++|-|.||||||+....+++.+. .+..||.-+ .++..+|+.
T Consensus 9 ~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~v~YISTR--Vd~d~vy~~ 55 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTTFALELLNSLKDHGNVMYISTR--VDQDTVYEM 55 (484)
T ss_pred CCcEEEEecCCCCCceeeehhhHHHHhccCCeEEEEec--cCHHHHHHh
Confidence 455799999999999999999999986 456798866 455555543
No 309
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.41 E-value=0.0035 Score=58.08 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
+..++|.|++|||||++.+.+.+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4579999999999999999999999876663
No 310
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.37 E-value=0.012 Score=66.02 Aligned_cols=75 Identities=8% Similarity=0.038 Sum_probs=54.9
Q ss_pred HHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC----CeEEEeccccCCHHHHHHHHHH
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR----PFVYTSCLSCYSPRILFESILN 129 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~----~~~yVnc~~~~s~r~l~~~Il~ 129 (535)
+.+.+++.|.++-+..|...+.. ..+++++|+||||||++++.+++.+.. .++|+.= ..-++..++..+..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n-~~~~~~~~~~~v~~ 88 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN-PEDPNMPRIVEVPA 88 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC-CCCCchHHHHHHHH
Confidence 35667888999888888877765 358999999999999999999999863 3344431 22356666777776
Q ss_pred HHhh
Q 009415 130 QLLL 133 (535)
Q Consensus 130 ~L~~ 133 (535)
+++.
T Consensus 89 ~~g~ 92 (608)
T TIGR00764 89 GEGR 92 (608)
T ss_pred hhch
Confidence 6654
No 311
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.31 E-value=0.017 Score=54.04 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=30.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~ 118 (535)
++|.|++|+|||+.+..++...+.+.+|+...+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~ 36 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF 36 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC
Confidence 68999999999999999998877889999765544
No 312
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.31 E-value=0.0045 Score=55.47 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=24.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
+++.|+||+||||+++.+.+.++ +..|+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEe
Confidence 68999999999999999999998 44455
No 313
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.30 E-value=0.0029 Score=54.46 Aligned_cols=23 Identities=22% Similarity=0.628 Sum_probs=20.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
|+|||+||+|||++++.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999887763
No 314
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.29 E-value=0.018 Score=63.41 Aligned_cols=55 Identities=20% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHH
Q 009415 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~ 126 (535)
|=.+++.+...+..++|+|+||+|||+++.+++.+. +.+.+||...+ ++..+.+.
T Consensus 262 lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~--~~~~i~~~ 319 (509)
T PRK09302 262 LDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE--SRAQLIRN 319 (509)
T ss_pred HHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC--CHHHHHHH
Confidence 334444433344568899999999999999988643 67899998654 45555444
No 315
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.29 E-value=0.061 Score=49.79 Aligned_cols=52 Identities=10% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCcEEEEEEeCCccccccc--CCCChHHHHHccccccCCCcEEEEEEeCCCccccccCC
Q 009415 186 NGKMIYLIFDNFELVREWD--KSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNT 242 (535)
Q Consensus 186 ~~~~~vlVLDe~d~L~~~d--~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~ 242 (535)
.+..-+|||||+-....++ ...+++..| +.-+ +++.||+.+...|+.++...
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll----~~rp-~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLL----KAKP-EDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHH----HcCC-CCCEEEEECCCCCHHHHHhC
Confidence 3456789999999885432 012333333 3322 46899999999888877544
No 316
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.28 E-value=0.021 Score=57.53 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=75.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (535)
+....|||.+|.|||..++..+.... ...++-...+++...+...+........ -..+.++...+..
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~p-~~~l~~~~p~~~a~~~i~~i~~~~~~~~------------~~~~~d~~~~~~~ 160 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSNP-NALLIEADPSYTALVLILIICAAAFGAT------------DGTINDLTERLMI 160 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccCc-cceeecCChhhHHHHHHHHHHHHHhccc------------chhHHHHHHHHHH
Confidence 34688999999999999999998765 2335567778888888887777665431 1133343333222
Q ss_pred HHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
.+ .+..-.|++||+|+|. ..-|..|-++++.. .+.++++++.-
T Consensus 161 ~l-----------------------~~~~~~iivDEA~~L~-----~~ale~lr~i~d~~---Gi~~vLvG~pr 203 (297)
T COG2842 161 RL-----------------------RDTVRLIIVDEADRLP-----YRALEELRRIHDKT---GIGVVLVGMPR 203 (297)
T ss_pred HH-----------------------ccCcceeeeehhhccC-----hHHHHHHHHHHHhh---CceEEEecChH
Confidence 21 1234567799999995 34578888888875 47888888774
No 317
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.25 E-value=0.014 Score=66.83 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.--+.|...+...+. .+.++|.|+||||||++++.+++.+.
T Consensus 323 ~l~~~Q~~Ai~~~~~-----~~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 323 GLSEEQKQALDTAIQ-----HKVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CCCHHHHHHHHHHHh-----CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344566666655432 24789999999999999999988764
No 318
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.19 E-value=0.013 Score=63.54 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=35.2
Q ss_pred HHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009415 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (535)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~ 116 (535)
.|=.+|+.+..++..++|+|+||+|||+++.+++..+ +.+++||...+
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 3444555444445568899999999999999998765 35788998654
No 319
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.18 E-value=0.0052 Score=59.77 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFR 103 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~ 103 (535)
..++|.||.|+|||++++.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4589999999999999999883
No 320
>PRK03839 putative kinase; Provisional
Probab=96.13 E-value=0.0051 Score=57.85 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
.|+|.|+||+||||+.+.+.+.++++++-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id 30 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVD 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 37899999999999999999999877643
No 321
>PRK13947 shikimate kinase; Provisional
Probab=96.11 E-value=0.0059 Score=56.70 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=27.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
.+|+|.|+||+|||++.+.+.+.|+.+++-
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999988753
No 322
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.10 E-value=0.018 Score=60.61 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=32.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC-----CeEEEecccc-CCHHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSR-----PFVYTSCLSC-YSPRILFESIL 128 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~-----~~~yVnc~~~-~s~r~l~~~Il 128 (535)
+.-..|.||+|+|||++++.+.+.... ..+++.+.+. .....+.+.|.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 445889999999999999999987643 2233444443 23445555555
No 323
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.08 E-value=0.015 Score=66.86 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+.--+.|...+..++.+ ....+|.|++|||||++++.+.+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s----~~~~il~G~aGTGKTtll~~i~~~~~ 393 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS----GDIAVVVGRAGTGKSTMLKAAREAWE 393 (744)
T ss_pred CCCCHHHHHHHHHHhcC----CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 33456777777666543 24688999999999999999987653
No 324
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.043 Score=63.22 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHhhcCCChHHHHHHHHHHHhccC----CC-C-CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 55 DLLSRFPGRRVQILELLRLLGTLN----SS-M-PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~~----~~-~-~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
.|.++++|=++-+..+...+..+. .+ + ..+++.||.|+|||-+++++...+ +-.++.|++.+.
T Consensus 559 ~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~ 630 (898)
T KOG1051|consen 559 RLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEF 630 (898)
T ss_pred HHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhh
Confidence 456789999999999999987642 12 2 238899999999999999999886 245677776553
No 325
>PHA02624 large T antigen; Provisional
Probab=96.03 E-value=0.015 Score=64.15 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
.++++|||+|||||+++.++++.|+-..+-|||..
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 36999999999999999999999965555577644
No 326
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.00 E-value=0.008 Score=62.64 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=36.4
Q ss_pred cCCChHHHHHHHHHHHhccC---CCC-CCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 59 RFPGRRVQILELLRLLGTLN---SSM-PPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~---~~~-~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
.+.|=++.+.+|...+.... ... ..+++.||||+||||+++++++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45555666777777775532 112 34889999999999999999999863
No 327
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.99 E-value=0.014 Score=61.51 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
.+.++||.|+.|||||.+++++.+.+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4557999999999999999999988853
No 328
>PRK07261 topology modulation protein; Provisional
Probab=95.98 E-value=0.007 Score=56.73 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=27.3
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
++|.|++|+||||+++.+.+.++.+++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999888766554
No 329
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.96 E-value=0.043 Score=54.92 Aligned_cols=97 Identities=15% Similarity=0.262 Sum_probs=54.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHH
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (535)
.=|+|+||+|||.++.+++-.. +..++||++....++..+.+ |++.........-+.+ ...+|-+..++
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l~~I-~v~~~~~~~~l 118 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEILDNI-FVIRVFDLEEL 118 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHHHTE-EEEE-SSHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccccccchhhhce-eeeecCCHHHH
Confidence 3499999999998888776432 35699999888777765543 4443211000000000 02345566665
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccc
Q 009415 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR 201 (535)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~ 201 (535)
...|..+... +. ..+.-+||||.+-.+.
T Consensus 119 ~~~L~~l~~~-l~------------------~~~ikLIVIDSIaalf 146 (256)
T PF08423_consen 119 LELLEQLPKL-LS------------------ESKIKLIVIDSIAALF 146 (256)
T ss_dssp HHHHHHHHHH-HH------------------HSCEEEEEEETSSHHH
T ss_pred HHHHHHHHhh-cc------------------ccceEEEEecchHHHH
Confidence 5554432222 11 1246789999999884
No 330
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.96 E-value=0.0069 Score=56.91 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=24.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
++|.|+||+||||+.+.+.++++..++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i 28 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 689999999999999999999985443
No 331
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.95 E-value=0.038 Score=60.92 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=37.3
Q ss_pred HHhccCCCCCCeEEECCCCCCHHHHHHHHHHh-c---CCCeEEEeccccCCHHHHHHHH
Q 009415 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH-L---SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 73 ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~-l---~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+++.....+..++|+|+||||||+++.+++.+ + +.+.+||++.+ ++..+.+..
T Consensus 23 ~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee--~~~~i~~~~ 79 (509)
T PRK09302 23 ITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE--SPEDIIRNV 79 (509)
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC--CHHHHHHHH
Confidence 34433334456899999999999999887743 2 57899998766 455555554
No 332
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.94 E-value=0.059 Score=64.80 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=44.0
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-CeEEEecccc--CCHHHHHHHHHHHHhh
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSCLSC--YSPRILFESILNQLLL 133 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~-~~~yVnc~~~--~s~r~l~~~Il~~L~~ 133 (535)
.+|-.+. ..+|...|.. ...++|.|++|+||||.+=.++-..+. ....|-|.+- ...+.+.+++...++.
T Consensus 65 ~LPi~~~-~~~Il~~l~~----~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 65 NLPVSAK-REDIAEAIAE----NQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred CCCHHHH-HHHHHHHHHh----CceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCC
Confidence 3444332 2555666654 347899999999999998888876652 2335555443 2445566677776643
No 333
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.084 Score=56.00 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=27.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC-------CCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS-------RPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~-------~~~~yVnc~~~ 117 (535)
.+++.||+|+||||++..++..+. .++..|.|...
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 588999999999999999987652 45666766543
No 334
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.91 E-value=0.043 Score=62.08 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=31.9
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.|-+.....|....-. ...+.++|+|++|||||++++.+.+.+
T Consensus 5 ~ivGq~~~~~al~~~av~--~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVD--PRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred hhcChHHHHHHHHHHhhC--CCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 345555555555444332 133569999999999999999999887
No 335
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.006 Score=56.68 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=25.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
.+.|.|.|||||||+.+.+- .++..++++|
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999888 8987776654
No 336
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.88 E-value=0.015 Score=58.69 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=22.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVn 113 (535)
|-|+|+|.||+|||++++.+.+.+. ..+.+|+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 5689999999999999999998763 5566666
No 337
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.87 E-value=0.0061 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=21.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhc
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l 105 (535)
|+|.|++|+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 338
>PRK14530 adenylate kinase; Provisional
Probab=95.86 E-value=0.0083 Score=58.26 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=26.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
+.++|.|+||+||||+++.+.+.++++|+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 469999999999999999999999866553
No 339
>PRK06217 hypothetical protein; Validated
Probab=95.84 E-value=0.0091 Score=56.44 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
.|+|.|.+|+||||+.+.+.+.++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3899999999999999999999998765443
No 340
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.82 E-value=0.037 Score=63.29 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHh-ccCCCCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCH
Q 009415 72 RLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSP 120 (535)
Q Consensus 72 ~ll~-~~~~~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~ 120 (535)
.+|+ .....+..+.|+|++|||||+++..++.. .+-+++||+.-+...+
T Consensus 50 ~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~ 102 (790)
T PRK09519 50 VALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP 102 (790)
T ss_pred HhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhH
Confidence 3454 33334455889999999999999887653 4678899997665443
No 341
>PRK06762 hypothetical protein; Provisional
Probab=95.82 E-value=0.0099 Score=55.02 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.+.|.|++|+||||+++.+.+.++..+++++.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 47899999999999999999999766667764
No 342
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.82 E-value=0.075 Score=57.68 Aligned_cols=68 Identities=24% Similarity=0.429 Sum_probs=51.9
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.|...++.++............+|+|.|.+||||-.+++++=+.-. -||+-|||... |..|+|+-|
T Consensus 246 ~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi--Pe~LlESEL 316 (560)
T COG3829 246 DIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI--PETLLESEL 316 (560)
T ss_pred hhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC--CHHHHHHHH
Confidence 566777888888777766555566799999999999999988876653 58999999765 455666533
No 343
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.79 E-value=0.018 Score=65.04 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.|...+...+.. .+.++|+||||||||+++..++.++
T Consensus 160 ~~Q~~Av~~~l~~----~~~~lI~GpPGTGKT~t~~~ii~~~ 197 (637)
T TIGR00376 160 ESQKEAVSFALSS----KDLFLIHGPPGTGKTRTLVELIRQL 197 (637)
T ss_pred HHHHHHHHHHhcC----CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4555566555433 3568899999999999888888764
No 344
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.78 E-value=0.0082 Score=56.28 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
..+++.|+||+||||+++.+.+.++..++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 45899999999999999999999876665444
No 345
>PRK00625 shikimate kinase; Provisional
Probab=95.78 E-value=0.0092 Score=56.12 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=27.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
+|+|.|+||+||||+.+.+.++++.+++-++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999997775444
No 346
>PRK10646 ADP-binding protein; Provisional
Probab=95.77 E-value=0.042 Score=50.47 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
+++..+|...|.....++..+++.|.=|+|||+.++.+++.+++
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46777788887765444556889999999999999999999984
No 347
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.77 E-value=0.01 Score=55.79 Aligned_cols=30 Identities=13% Similarity=0.291 Sum_probs=25.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.+.++|.|+||+||||+++.+.+.++..++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 467899999999999999999999875543
No 348
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=95.76 E-value=0.027 Score=51.64 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=27.3
Q ss_pred EEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCc
Q 009415 189 MIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP 235 (535)
Q Consensus 189 ~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~ 235 (535)
.-+||+||+|.+..+. ....+..+.+.... ..+..+|++|.+++
T Consensus 120 ~~~iViDE~h~l~~~~-~~~~~~~i~~~~~~--~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDET-FRAMLKSILRRLKR--FKNIQIILLSATLP 163 (169)
T ss_dssp ESEEEEETHHHHHHTT-HHHHHHHHHHHSHT--TTTSEEEEEESSST
T ss_pred ceeeccCccccccccc-HHHHHHHHHHHhcC--CCCCcEEEEeeCCC
Confidence 5688899999997632 12234444433222 23578888888875
No 349
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.76 E-value=0.088 Score=49.71 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=27.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-------------CCCeEEEecccc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-------------SRPFVYTSCLSC 117 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-------------~~~~~yVnc~~~ 117 (535)
+...+|.|++|+|||+++.+++.++ +.++.||++...
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3458899999999999999988654 246789987544
No 350
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.76 E-value=0.028 Score=66.12 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
-++|...+..++.. ....+|.|.+|||||++++.+.+.+
T Consensus 348 s~eQr~Av~~il~s----~~v~vv~G~AGTGKTT~l~~~~~~~ 386 (988)
T PRK13889 348 SGEQADALAHVTDG----RDLGVVVGYAGTGKSAMLGVAREAW 386 (988)
T ss_pred CHHHHHHHHHHhcC----CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 45666666655543 2357899999999999998877655
No 351
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.75 E-value=0.011 Score=53.67 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=25.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+++|.|++|+|||++.+.+.+.++.+++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4789999999999999999999987654
No 352
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.73 E-value=0.025 Score=58.42 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=36.5
Q ss_pred CHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 52 SLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 52 ~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.++++.+.-..-..+...|..++.. ..+++|.|++|+||||++++++..+
T Consensus 119 tl~~lv~~g~~~~~~~~~L~~~v~~----~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 119 PLDDYVTSKIMTEAQASVIRSAIDS----RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CHHHHHHcCCCCHHHHHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4555555433445566666666554 4589999999999999999999876
No 353
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.71 E-value=0.05 Score=65.37 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=39.1
Q ss_pred HHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009415 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (535)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~ 118 (535)
+..+.+.++- ..++++-|.||.|||+++.++++..|-+.+.||..+-.
T Consensus 1533 l~rVlRAmqv----~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT 1580 (4600)
T COG5271 1533 LRRVLRAMQV----GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT 1580 (4600)
T ss_pred HHHHHHHHhc----CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc
Confidence 3444555543 46899999999999999999999999999999976643
No 354
>PRK14532 adenylate kinase; Provisional
Probab=95.69 E-value=0.0098 Score=56.28 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+++|.|+||+||||+.+.+.+.++..++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4799999999999999999999986554
No 355
>PRK04040 adenylate kinase; Provisional
Probab=95.69 E-value=0.0099 Score=56.66 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=25.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.++|+|+||+||||+++.+.+.+...+.+++.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 48899999999999999999999422333443
No 356
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.64 E-value=0.038 Score=56.62 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 51 ISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 51 ~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+++++.+.=..-+.+...|..++.. ..+++|.|++|+||||+++++++.+
T Consensus 106 ~tl~~l~~~g~~~~~~~~~L~~~v~~----~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 106 FTLDDYVEAGIMTAAQRDVLREAVLA----RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCHHHHHhcCCCCHHHHHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35555543322223455555555543 4589999999999999999999886
No 357
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.64 E-value=0.044 Score=65.06 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=48.4
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCcccccc-CCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHS-NTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~-~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
..+||||||+..|... .+.++-..|.+|...-.-..+.+|+.++.+.-+.+. .+....|..|-|.==++.+...||..
T Consensus 1140 P~IVVIIDE~AdLm~~-~~kevE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrtILd~ 1218 (1355)
T PRK10263 1140 PYIVVLVDEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 1218 (1355)
T ss_pred CeEEEEEcChHHHHhh-hhHHHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHHhcCC
Confidence 4589999999777531 223444445555433222357778877776333332 11112336888888889999999975
Q ss_pred cC
Q 009415 267 NQ 268 (535)
Q Consensus 267 ~~ 268 (535)
..
T Consensus 1219 ~G 1220 (1355)
T PRK10263 1219 AG 1220 (1355)
T ss_pred cc
Confidence 43
No 358
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.64 E-value=0.012 Score=52.79 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=26.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
+.|.|++|+|||++.+.+.+.++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999987765443
No 359
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.63 E-value=0.028 Score=63.26 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=53.8
Q ss_pred HhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC----CeEEEeccccCCHHHHHHHHHHHH
Q 009415 56 LLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR----PFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 56 l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~----~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
+.+++.|.++.+..|...+.. ..+++|+|+||||||++++.+.+.+.. ...|+.. ...+.+.+++.+..++
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~----~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQ----RRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 445788888888888877765 357999999999999999999988752 2333332 3346777888887665
Q ss_pred hh
Q 009415 132 LL 133 (535)
Q Consensus 132 ~~ 133 (535)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 360
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.61 E-value=0.21 Score=58.42 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHHhccCC-CCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 60 FPGRRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
+.||+.|+..|...+..... ..--+.|-|.+|.|||.+|+.|.+...-
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~ 50 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQ 50 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhc
Confidence 68999999999999987533 2335889999999999999999988753
No 361
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.58 E-value=0.0097 Score=55.69 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+++|.|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37999999999999999999998
No 362
>PRK14531 adenylate kinase; Provisional
Probab=95.58 E-value=0.012 Score=55.54 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=25.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|.|+||+||||+.+.+.+.+++.++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i 31 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL 31 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 4899999999999999999999986654
No 363
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.57 E-value=0.012 Score=55.72 Aligned_cols=27 Identities=15% Similarity=0.417 Sum_probs=24.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
|+|.|+||+||||+.+.+.+.++..++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 789999999999999999999876553
No 364
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.57 E-value=0.017 Score=51.14 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHhhcCCChHHHHHHHHHHHhccC---CCCCC--eEEECCCCCCHHHHHHHHHHhc
Q 009415 55 DLLSRFPGRRVQILELLRLLGTLN---SSMPP--LFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~~---~~~~~--l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+|..++.|-.--.+.+...+.... .+..+ +-++|++|||||.+.+.+++++
T Consensus 22 ~L~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 22 DLQRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 455566665555555554444321 22223 4489999999999999999885
No 365
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.54 E-value=0.018 Score=55.24 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++|...+..++.+. ....+|.|++|||||++++.+.+.+.
T Consensus 4 ~~Q~~a~~~~l~~~---~~~~~l~G~aGtGKT~~l~~~~~~~~ 43 (196)
T PF13604_consen 4 EEQREAVRAILTSG---DRVSVLQGPAGTGKTTLLKALAEALE 43 (196)
T ss_dssp HHHHHHHHHHHHCT---CSEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---CeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 46777777776551 24588999999999999999887663
No 366
>PRK13949 shikimate kinase; Provisional
Probab=95.54 E-value=0.013 Score=54.82 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yV 112 (535)
.|+|.|++|+||||+.+.+.+.++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 589999999999999999999998766543
No 367
>PRK06547 hypothetical protein; Provisional
Probab=95.53 E-value=0.013 Score=55.08 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
..+.|.|++|+||||+++.+.+.++++++
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 34779999999999999999999876654
No 368
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.48 E-value=0.017 Score=63.53 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=41.7
Q ss_pred cCCChHHHHHHHHHHHhcc----CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 59 RFPGRRVQILELLRLLGTL----NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~----~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
.+.|=++.+.++..+|... ....+.+++.||||+|||++++.+.+.++.--+|
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y 133 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIY 133 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcce
Confidence 5778899999999988442 2344569999999999999999999988733344
No 369
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.48 E-value=0.041 Score=65.18 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
=-+.|...+..+... ....+|.|++|||||++++.+.+.+.
T Consensus 382 Ls~eQ~~Av~~i~~~----~r~~~v~G~AGTGKTt~l~~~~~~~e 422 (1102)
T PRK13826 382 LSDEQKTAIEHVAGP----ARIAAVVGRAGAGKTTMMKAAREAWE 422 (1102)
T ss_pred CCHHHHHHHHHHhcc----CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345666665554322 34689999999999999999987653
No 370
>PRK14528 adenylate kinase; Provisional
Probab=95.45 E-value=0.015 Score=55.34 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
..++|.|+||+||||+++.+.+.++++++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 45899999999999999999999986654
No 371
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.45 E-value=0.12 Score=48.50 Aligned_cols=135 Identities=12% Similarity=0.130 Sum_probs=67.8
Q ss_pred CCeEEECCCCCCHHHHHHHHH-Hhc--CCCeEEEe---ccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVF-RHL--SRPFVYTS---CLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl-~~l--~~~~~yVn---c~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (535)
+-+.||+++|.||||.+-.+. +.. +.+++.|. ....+....+++.+ .+.-... ..|+.. .. .+..+-.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~--g~g~~~-~~-~~~~~~~ 79 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVM--GTGFTW-ET-QNREADT 79 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEEC--CCCCee-cC-CCcHHHH
Confidence 568999999999997766655 443 45665443 22223444455443 1111110 011110 01 1111111
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--CCCChHHHHHccccccCCCcEEEEEEeCC
Q 009415 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--KSSSILPFLFGLSDILKMPEVGMIFISST 233 (535)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~~~~lL~~L~rL~E~~~~~~l~vI~Is~~ 233 (535)
...++.++...+.+ ..+..-+|||||+-....+. ...+++..| +.-+ +++.||+.+..
T Consensus 80 ~~~~~~~~~a~~~l---------------~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL----~~rp-~~~evVlTGR~ 139 (173)
T TIGR00708 80 AIAKAAWQHAKEML---------------ADPELDLVLLDELTYALKYGYLDVEEVVEAL----QERP-GHQHVIITGRG 139 (173)
T ss_pred HHHHHHHHHHHHHH---------------hcCCCCEEEehhhHHHHHCCCcCHHHHHHHH----HhCC-CCCEEEEECCC
Confidence 22223332221211 13456789999999665421 012343333 3322 57899999999
Q ss_pred CccccccCC
Q 009415 234 SPDTYHSNT 242 (535)
Q Consensus 234 ~~~~f~~~~ 242 (535)
.|+.+....
T Consensus 140 ~p~~l~e~A 148 (173)
T TIGR00708 140 CPQDLLELA 148 (173)
T ss_pred CCHHHHHhC
Confidence 888876544
No 372
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.40 E-value=0.011 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=19.4
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
|.|.|++||||||+++.+.+. +.++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~ 26 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPV 26 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeE
Confidence 689999999999999999988 5443
No 373
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.39 E-value=0.093 Score=57.51 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh----cCCCeEEEeccccCCHHHHHHH
Q 009415 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH----LSRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~----l~~~~~yVnc~~~~s~r~l~~~ 126 (535)
.+|+.....+..++|.|+||||||++..+++.+ .+.+.+||...+ ++..+.+.
T Consensus 12 ~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 12 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CHHHHHHH
Confidence 334443334556899999999999999998754 257999999753 45555443
No 374
>PRK02496 adk adenylate kinase; Provisional
Probab=95.34 E-value=0.017 Score=54.50 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.4
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yV 112 (535)
++|.|+||+||||+++.+.+.++.+++.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999998666543
No 375
>PLN02200 adenylate kinase family protein
Probab=95.33 E-value=0.019 Score=56.71 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=25.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.++|.|+||+||||+.+.+.+++++.+ |++
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~~h--is~ 74 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGFKH--LSA 74 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EEc
Confidence 478999999999999999999998654 554
No 376
>PHA00729 NTP-binding motif containing protein
Probab=95.33 E-value=0.011 Score=57.69 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..+++|+|+||||||+++..+++.++
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999999875
No 377
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.32 E-value=0.064 Score=51.47 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=31.6
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC-HHHHHHHHHHHH
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS-PRILFESILNQL 131 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s-~r~l~~~Il~~L 131 (535)
+.+.||+|+||||++-.+...+ +.++..|.+....- +..=++...+.+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l 55 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL 55 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh
Confidence 7799999999999988888654 56777888776643 223333444444
No 378
>PLN02674 adenylate kinase
Probab=95.31 E-value=0.03 Score=55.52 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=26.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.+.++|.||||+||||+.+.+.+++++.|+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 456999999999999999999999986554
No 379
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.099 Score=60.36 Aligned_cols=165 Identities=21% Similarity=0.260 Sum_probs=87.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-CeEEEecccc--CCHHHHHHHHHHHHhhccccccCCC
Q 009415 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-PFVYTSCLSC--YSPRILFESILNQLLLHKKNAFNGY 142 (535)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~-~~~yVnc~~~--~s~r~l~~~Il~~L~~~~~~~~~g~ 142 (535)
...+|...+.. -+.++|.|++|+||||-+-.+|-+.+. ..--|-|.+- ..++.+=+++.+++..... ..-||
T Consensus 54 ~~~~i~~ai~~----~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G-~~VGY 128 (845)
T COG1643 54 VRDEILKAIEQ----NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLG-ETVGY 128 (845)
T ss_pred HHHHHHHHHHh----CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcC-ceeeE
Confidence 34556666655 356999999999999988888766553 2224455443 2455666677777755322 23455
Q ss_pred CC--------CcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHH
Q 009415 143 SS--------AKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (535)
Q Consensus 143 ~~--------~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~ 214 (535)
+. ..+-.-+.| -..++.+... ..-.+.-+|||||++.=. .+ .+++-.|+
T Consensus 129 ~iRfe~~~s~~Trik~mTd-GiLlrei~~D-------------------~~Ls~ys~vIiDEaHERS-l~--tDilLgll 185 (845)
T COG1643 129 SIRFESKVSPRTRIKVMTD-GILLREIQND-------------------PLLSGYSVVIIDEAHERS-LN--TDILLGLL 185 (845)
T ss_pred EEEeeccCCCCceeEEecc-HHHHHHHhhC-------------------cccccCCEEEEcchhhhh-HH--HHHHHHHH
Confidence 31 111111111 0112222210 112244578899998532 12 45555444
Q ss_pred -ccccccCCCcEEEEEEeCCC-cccc---ccC------CCCCCCeeEec-CCCCHHH
Q 009415 215 -GLSDILKMPEVGMIFISSTS-PDTY---HSN------TGYVAPIHVYF-PECTEDD 259 (535)
Q Consensus 215 -rL~E~~~~~~l~vI~Is~~~-~~~f---~~~------~g~~~p~~I~F-ppYt~~e 259 (535)
++..... +.+++|+.|.+. .++| +.+ -|-.-|..|+| ++-..++
T Consensus 186 k~~~~~rr-~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~ 241 (845)
T COG1643 186 KDLLARRR-DDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADY 241 (845)
T ss_pred HHHHhhcC-CCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcch
Confidence 3333322 249999998775 3333 322 23344678888 4444444
No 380
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.29 E-value=0.029 Score=44.13 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=23.3
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC-CCeEEE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLS-RPFVYT 112 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~-~~~~yV 112 (535)
+.|.|++|+|||++.+.+.+.++ ..+.++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 67899999999999999999862 344444
No 381
>COG1672 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.25 E-value=0.031 Score=58.59 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=46.2
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
..|.+||.|+.+|...+... +...++|||+..+|||++++.+++.....+.++.+.
T Consensus 2 ~~f~dRE~El~~L~~~~~~~--~~~~~~i~G~rrvGKTsLl~~~~~~~~~~~~~~~~~ 57 (359)
T COG1672 2 MKFFDREKELEELLKIIESE--PPSIVFIYGRRRVGKTSLLKEFIKEKLGIYILVDFY 57 (359)
T ss_pred cchhhHHHHHHHHHHHHhcC--CCeEEEEEcccccCHHHHHHHHHhcCCCcceEEEee
Confidence 36889999999999998762 122499999999999999999999988777776654
No 382
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.19 E-value=0.14 Score=61.63 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=37.7
Q ss_pred HHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCC-eEEEecccc--CCHHHHHHHHHHHHh
Q 009415 68 LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRP-FVYTSCLSC--YSPRILFESILNQLL 132 (535)
Q Consensus 68 ~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~-~~yVnc~~~--~s~r~l~~~Il~~L~ 132 (535)
.+|...+.. ...++|.|++||||||.+=.++-.++.. ...|-|.+- ...+.+-++|...+.
T Consensus 80 ~~Il~ai~~----~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 80 QDILEAIRD----HQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred HHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHh
Confidence 445555544 2468999999999999888777766532 123444322 234556666666654
No 383
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.18 E-value=0.019 Score=52.04 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=27.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~ 118 (535)
++|.|+||+||||+.+.+.+.++. .++++....
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~--~~i~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA--PFIDGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC--EEEeCcccc
Confidence 689999999999999999998764 456765554
No 384
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.16 E-value=0.03 Score=58.15 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=34.8
Q ss_pred cCCChHHHHHHHHHH-HhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 59 RFPGRRVQILELLRL-LGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 59 ~~p~Re~qi~~L~~l-l~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+.|.+..++.|.-. +.+ ...+++++|+||||||++++.+...+.
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~---~~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDP---GIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred HhCCHHHHHHHHHHHHhcc---CCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 456778887776643 323 236799999999999999999999884
No 385
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.15 E-value=0.021 Score=55.27 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=24.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
++|.|+||+||||+.+.+.+.+++.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999866643
No 386
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.12 E-value=0.02 Score=52.78 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=26.0
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
++|.|++|+||||+.+.+.+.++ ..+|+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccc
Confidence 57899999999999999999997 445565444
No 387
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.11 E-value=0.021 Score=55.37 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=24.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
|+|.|+||+||||+.+.+.+.+++.++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~i 29 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 789999999999999999999985554
No 388
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.10 E-value=0.02 Score=56.28 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=26.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yV 112 (535)
.++|.||||+||||+.+.+.+.++++++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999998766544
No 389
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.08 E-value=0.15 Score=59.25 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=25.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHH-HHHhc
Q 009415 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQ-VFRHL 105 (535)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~-vl~~l 105 (535)
...+|...|.. ...++|.|++|||||+.+-. +++..
T Consensus 6 ~~~~i~~~l~~----~~~vIi~a~TGSGKTT~vpl~lL~~~ 42 (819)
T TIGR01970 6 VLPALRDALAA----HPQVVLEAPPGAGKSTAVPLALLDAP 42 (819)
T ss_pred HHHHHHHHHHc----CCcEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556666654 35799999999999966555 45543
No 390
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.07 E-value=0.11 Score=51.89 Aligned_cols=126 Identities=15% Similarity=0.063 Sum_probs=69.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEecccc--CCHHHHHHHHHHHHhhccccc--cCCCCCCcCCCChhH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSC--YSPRILFESILNQLLLHKKNA--FNGYSSAKRCEKPSD 153 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~--~~~yVnc~~~--~s~r~l~~~Il~~L~~~~~~~--~~g~~~~~r~~~~~~ 153 (535)
.+-.+-|-|.+|+||||+.+.++...+. --++.+.... .+....-+.+.+-|....... .+.| +.-++.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSG 112 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRY-----PHELSG 112 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCc
Confidence 3557889999999999999999988763 2445554332 122222333333332211110 0111 011110
Q ss_pred HHHHHHHH-HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeC
Q 009415 154 FVIFVREA-LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISS 232 (535)
Q Consensus 154 f~~~L~~~-l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~ 232 (535)
-+.+++ +...+ .-++-+||.||.....+.--...++..|..+.+.. +++.+||+.
T Consensus 113 --GQrQRi~IARAL-------------------al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~---~lt~lFIsH 168 (268)
T COG4608 113 --GQRQRIGIARAL-------------------ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL---GLTYLFISH 168 (268)
T ss_pred --hhhhhHHHHHHH-------------------hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh---CCeEEEEEE
Confidence 001111 11100 12567889999998875422356777777787763 689999998
Q ss_pred CC
Q 009415 233 TS 234 (535)
Q Consensus 233 ~~ 234 (535)
+.
T Consensus 169 DL 170 (268)
T COG4608 169 DL 170 (268)
T ss_pred EH
Confidence 85
No 391
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.07 E-value=0.088 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=20.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
-+||||.-|||||.++..+...+
T Consensus 116 GlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 116 GLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred eEEEecccCcchhHHHHHHhhcC
Confidence 39999999999999999888665
No 392
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.06 E-value=0.097 Score=47.65 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
..+++..+|...|+.....+..|++.|.=|.||||++|.+++.+++
T Consensus 6 ~~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 6 PDEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 3467888888888876555667999999999999999999999983
No 393
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.06 E-value=0.15 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFR 103 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~ 103 (535)
+..+.|.||.|+||||+++.++-
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 44578999999999999998863
No 394
>PRK08233 hypothetical protein; Provisional
Probab=95.04 E-value=0.028 Score=52.49 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=26.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC-CCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS-RPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~-~~~~yVnc~ 115 (535)
-|.|.|+||+||||+++.+.++++ ...++.++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 477899999999999999999986 445555544
No 395
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.04 E-value=0.23 Score=47.28 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHH-Hhc--CCCeEEEeccc---cCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVF-RHL--SRPFVYTSCLS---CYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl-~~l--~~~~~yVnc~~---~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (535)
...+.|||++|.|||+.+-.+. +.. +.++..|.-.. .+....+++.+- .+.-. .. ..++... . +...+-
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~-~~-g~~~~~~-~-~~~~e~ 96 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFH-VM-GTGFTWE-T-QDRERD 96 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEE-EC-CCCCccc-C-CCcHHH
Confidence 4689999999999997766655 444 45666554322 234444443321 11100 00 0111100 1 111121
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--CCCChHHHHHccccccCCCcEEEEEEeC
Q 009415 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--KSSSILPFLFGLSDILKMPEVGMIFISS 232 (535)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~~~~lL~~L~rL~E~~~~~~l~vI~Is~ 232 (535)
....++.++...+.+ ..+..-+|||||+-....+. ...+++..| +.-+ +++.||+.+.
T Consensus 97 ~~~~~~~~~~a~~~l---------------~~~~ydlvVLDEi~~Al~~gli~~eevi~~L----~~rp-~~~evVlTGR 156 (191)
T PRK05986 97 IAAAREGWEEAKRML---------------ADESYDLVVLDELTYALKYGYLDVEEVLEAL----NARP-GMQHVVITGR 156 (191)
T ss_pred HHHHHHHHHHHHHHH---------------hCCCCCEEEEehhhHHHHCCCccHHHHHHHH----HcCC-CCCEEEEECC
Confidence 222223333221211 13456789999998876432 012333333 3322 4689999999
Q ss_pred CCccccccCC
Q 009415 233 TSPDTYHSNT 242 (535)
Q Consensus 233 ~~~~~f~~~~ 242 (535)
..|+.+....
T Consensus 157 ~~p~~Lie~A 166 (191)
T PRK05986 157 GAPRELIEAA 166 (191)
T ss_pred CCCHHHHHhC
Confidence 9888776543
No 396
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.03 E-value=0.057 Score=55.82 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=34.0
Q ss_pred CCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 51 ISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 51 ~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+++++.+.=..-..+...|..++.. ..+++|.|++|+||||++++++..+
T Consensus 122 ~tl~~l~~~g~~~~~~~~~L~~~v~~----~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 122 FTLDQYVERGIMTAAQREAIIAAVRA----HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCHHHHHhcCCCCHHHHHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 35565543322223444455444443 4689999999999999999999864
No 397
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.02 E-value=0.047 Score=51.76 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+...|...+.. ...+.|.|++|+||||++++++..+.
T Consensus 13 ~~~~~l~~~v~~----g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 13 LQAAYLWLAVEA----RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHhC----CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344444444433 56799999999999999999998764
No 398
>PLN02840 tRNA dimethylallyltransferase
Probab=94.94 E-value=0.09 Score=56.07 Aligned_cols=36 Identities=11% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
..++|.||+|+|||+++..+.++++..++.++...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 358899999999999999999999877665554433
No 399
>PLN02165 adenylate isopentenyltransferase
Probab=94.94 E-value=0.051 Score=56.15 Aligned_cols=29 Identities=10% Similarity=0.316 Sum_probs=25.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~ 108 (535)
.+..++|.||+|+|||+++..+...++..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~e 70 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSE 70 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCc
Confidence 34569999999999999999999998754
No 400
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=94.89 E-value=0.072 Score=57.20 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=59.5
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
.+.|+...+.++...+.-...+-.+|+|.|.+||||-.+++++=+.-. -+++++||.... ..|.+ +.|.|+.
T Consensus 224 ~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP--esLlE---SELFGHe 298 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP--ESLLE---SELFGHE 298 (550)
T ss_pred cceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc--hHHHH---HHHhccc
Confidence 577888888888888776555666799999999999999998876653 689999997753 22333 3567776
Q ss_pred ccccCCC
Q 009415 136 KNAFNGY 142 (535)
Q Consensus 136 ~~~~~g~ 142 (535)
+.+..|.
T Consensus 299 KGAFTGA 305 (550)
T COG3604 299 KGAFTGA 305 (550)
T ss_pred ccccccc
Confidence 6666554
No 401
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.028 Score=53.14 Aligned_cols=28 Identities=18% Similarity=0.522 Sum_probs=24.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|-|+||+||||.++.+.+.++++|+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3789999999999999999999877664
No 402
>PRK07667 uridine kinase; Provisional
Probab=94.86 E-value=0.058 Score=51.52 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=34.0
Q ss_pred HHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009415 69 ELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (535)
Q Consensus 69 ~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~ 118 (535)
.++..+.........|-|.|++|+||||+++.+.+.++ .+...+.....+
T Consensus 5 ~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 5 ELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 34444544322222367999999999999999998874 566677766544
No 403
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.80 E-value=0.035 Score=50.68 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
++|.|+||+|||++++.+.+.+ +...++++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 6899999999999999999988 556677763
No 404
>PRK14527 adenylate kinase; Provisional
Probab=94.80 E-value=0.024 Score=53.85 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=25.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+..++|.|+||+||||+++.+.+.++..++
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 345889999999999999999999986554
No 405
>PRK13946 shikimate kinase; Provisional
Probab=94.78 E-value=0.031 Score=52.91 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
.+|+|.|++|+|||++.+.+.+.|+.+++-
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id 40 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLD 40 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeEC
Confidence 469999999999999999999999988643
No 406
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=94.77 E-value=0.43 Score=51.31 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=31.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
...+++|+|.+||||+++.+.+-... +.+++.|||....
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~ 202 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN 202 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC
Confidence 34569999999999999999987654 3689999998653
No 407
>PRK01184 hypothetical protein; Provisional
Probab=94.71 E-value=0.031 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|.|+||+||||+.+ ++++++++++
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i 29 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVV 29 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEE
Confidence 47899999999999876 7888886654
No 408
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=94.71 E-value=0.029 Score=52.73 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=28.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
-|++.|++++||||+++.+.+.+..++.++...
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D 35 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVD 35 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecC
Confidence 488999999999999999999999998888754
No 409
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.70 E-value=0.028 Score=53.52 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+..++|.||+|+|||++++.+++...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34588999999999999999999863
No 410
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=94.70 E-value=0.19 Score=58.44 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHH-HHHHh
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII-QVFRH 104 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~-~vl~~ 104 (535)
+...+|...+.. ...++|.|++|||||+.+- .+++.
T Consensus 8 ~~~~~i~~~l~~----~~~vvv~A~TGSGKTt~~pl~lL~~ 44 (812)
T PRK11664 8 AVLPELLTALKT----APQVLLKAPTGAGKSTWLPLQLLQH 44 (812)
T ss_pred HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHc
Confidence 344556666654 3579999999999997665 45544
No 411
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.68 E-value=0.32 Score=52.15 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=36.6
Q ss_pred HHHHHHHhccCC------CCC-CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 68 LELLRLLGTLNS------SMP-PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 68 ~~L~~ll~~~~~------~~~-~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
++|..++++... ..| .+.+.|++|+||||++..++..+ +.+++.|+|+...
T Consensus 80 ~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 80 KELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred HHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 456666654211 123 37799999999999999988665 5778888887655
No 412
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.66 E-value=0.25 Score=45.83 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=20.3
Q ss_pred ECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 87 YGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 87 ~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
-+.+||||||+..++.+.++- +..|.
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQ 30 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQ 30 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccc
Confidence 578999999999999988862 44443
No 413
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=94.63 E-value=0.028 Score=65.79 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=55.4
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
..+|||+||+.-|... .+.++...+.||...-.-..+.+|+.++.+..+....+....|..|-|.-.++.+-+.|+...
T Consensus 639 P~iviiiDe~adlm~~-~~k~ve~~i~rLa~~ara~GIHlilatqRps~dVit~ikanipsrIaf~v~s~~dsr~il~~~ 717 (858)
T COG1674 639 PYIVIIIDEYADLMMV-AGKELEELIARLAQKGRAAGIHLILATQRPSVDVITGIKANIPTRIALRLSSKIDSRLILGQD 717 (858)
T ss_pred CeEEEEEcchHHHhhh-hhHHHHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHhCCcceEEEEEcCccceeeecccc
Confidence 6799999999999753 335577777777554333467888888776444443222334568999999999999998844
Q ss_pred C
Q 009415 268 Q 268 (535)
Q Consensus 268 ~ 268 (535)
.
T Consensus 718 g 718 (858)
T COG1674 718 G 718 (858)
T ss_pred c
Confidence 3
No 414
>PRK13948 shikimate kinase; Provisional
Probab=94.63 E-value=0.04 Score=52.28 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=28.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
+.+|++.|.+|+||||+.+.+.+.++.+++ +++
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~i--D~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFI--DTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEE--ECC
Confidence 356999999999999999999999987775 544
No 415
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.63 E-value=0.037 Score=51.39 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=26.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.+++|.|++|+|||++.+.+.+.++.+++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 36899999999999999999999987764
No 416
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.62 E-value=0.22 Score=53.59 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=38.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
++..++|.|.||+|||+++..++.+. +.+++|+++- -+...+..+++....+
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE--m~~~~l~~Rl~~~~~~ 248 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE--MSAEQLGERLLASKSG 248 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC--CCHHHHHHHHHHHHcC
Confidence 44458899999999999999988543 5678888743 3667777777766543
No 417
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.61 E-value=0.036 Score=51.83 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
.+|++.|++|+||||+-+.+.+.|+.+|+-++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999998886443
No 418
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.61 E-value=0.036 Score=51.18 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
|.|+|++|+|||++++.+.+.+++++
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~ 28 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKL 28 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCce
Confidence 67999999999999999999998664
No 419
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.59 E-value=0.036 Score=51.98 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=26.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
.+|+|.|++|+||||+.+.+.+.++.+++-
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd 34 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEE
Confidence 469999999999999999999999876643
No 420
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.58 E-value=0.053 Score=56.23 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=48.6
Q ss_pred hcCCChHHHHHHHHHHHhccCC----CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEE--EeccccCCHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNS----SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVY--TSCLSCYSPRIL 123 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~----~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y--Vnc~~~~s~r~l 123 (535)
+.|+|=++.+.+|.+++..... .-..+++.||.|+|||++++.+.+.++.-.+| .-|.-.-.|=+|
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L 132 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHL 132 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhh
Confidence 4788889999999999987532 22358999999999999999999988743333 356554454333
No 421
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.19 Score=49.44 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=33.0
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
++-+||+||.-...|.-....+|..|..+.+. .++++||||.+.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~---~~lt~l~IsHdl 202 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKE---RGLTYLFISHDL 202 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHh---cCceEEEEeCcH
Confidence 56789999998776543335677777777765 479999999985
No 422
>PRK04182 cytidylate kinase; Provisional
Probab=94.54 E-value=0.039 Score=51.38 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
|.|.|++|+|||++.+.+.+.+++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~ 28 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKH 28 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 68999999999999999999998654
No 423
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.51 E-value=0.06 Score=53.82 Aligned_cols=47 Identities=28% Similarity=0.408 Sum_probs=34.5
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.....++|+|+||||||+.+.+++... +.+++||...+ ++..|.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHH
Confidence 344569999999999999988888653 67899998655 344444443
No 424
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.49 E-value=0.18 Score=51.22 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=29.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc----C-CCeEEEeccccC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL----S-RPFVYTSCLSCY 118 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l----~-~~~~yVnc~~~~ 118 (535)
.+.|.||+|+||||++..++..+ + .++++|.+....
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 47799999999999999988765 3 678888887644
No 425
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.46 E-value=0.38 Score=51.72 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=29.3
Q ss_pred eEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYS 119 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s 119 (535)
+++.|++|+||||++..++..+ +.+++.|+|.....
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 7799999999999988887653 46788999987543
No 426
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.46 E-value=0.035 Score=49.09 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
+..++++|+=|+|||+.++.+++.+++
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 456889999999999999999999974
No 427
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.46 E-value=0.25 Score=53.94 Aligned_cols=48 Identities=15% Similarity=0.385 Sum_probs=30.2
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccC-CCcEEEEEEeCCCccc
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILK-MPEVGMIFISSTSPDT 237 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~-~~~l~vI~Is~~~~~~ 237 (535)
..-+|||||+|.+.+|. .++-+.+.++..+.. .+++.++++|.+++..
T Consensus 127 ~i~~iViDEaH~i~~~g--~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~ 175 (470)
T TIGR00614 127 GITLIAVDEAHCISQWG--HDFRPDYKALGSLKQKFPNVPIMALTATASPS 175 (470)
T ss_pred CcCEEEEeCCcccCccc--cccHHHHHHHHHHHHHcCCCceEEEecCCCHH
Confidence 56689999999998875 444444333322211 2567788888776543
No 428
>PRK10867 signal recognition particle protein; Provisional
Probab=94.44 E-value=0.41 Score=51.52 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHHHhccC------CCCCC-eEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCC
Q 009415 68 LELLRLLGTLN------SSMPP-LFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYS 119 (535)
Q Consensus 68 ~~L~~ll~~~~------~~~~~-l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s 119 (535)
++|..++++.. ...|. +++.|++|+||||++..++..+ +.+++.|+|+....
T Consensus 80 ~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 80 DELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred HHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 35666665421 12233 7799999999999888887654 56788899877543
No 429
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.43 E-value=0.074 Score=54.78 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+..+|+|.|++|+|||++.+.+.+.++.+++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4557999999999999999999999998876
No 430
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.43 E-value=0.042 Score=52.67 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=33.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFESILN 129 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l-~~~~~yVnc~~~~s~r~l~~~Il~ 129 (535)
.+++.|+||+|||+++..++..+ .-.+++||.++....---|..+..
T Consensus 17 ~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~ 64 (199)
T PF06414_consen 17 LIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLK 64 (199)
T ss_dssp EEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhh
Confidence 47889999999999999999998 678899998776433223444443
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.42 E-value=0.063 Score=53.99 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
--+.++..|..++.. ....++|.|++|+||||+++++++.+.
T Consensus 64 ~~~~~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 64 LKPENLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 345677777776654 245689999999999999999998874
No 432
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.41 E-value=0.041 Score=56.09 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=26.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
.+++.|+||+||||+++.+.+.+. .+.+++..
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D 35 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP-KAVNVNRD 35 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC-CCEEEecc
Confidence 478899999999999999999984 45666653
No 433
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=94.41 E-value=0.23 Score=53.03 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=56.2
Q ss_pred hcCCChHHHHHHHHHHHhccCC-CCCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEecccc---C----CHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSC---Y----SPRILFES 126 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~---~----s~r~l~~~ 126 (535)
.--.||+.++..|..-|..... .+..-+|.|.-|+|||.+++.+.+. -+..+++|++... + -...+|.+
T Consensus 25 ~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~fvvs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 25 HIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGFVVSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred ceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCCEEEEEecCCCcccccccccHHHHHHH
Confidence 3468999999999988865433 3335889999999999888877754 3567778876651 2 34568999
Q ss_pred HHHHHhh
Q 009415 127 ILNQLLL 133 (535)
Q Consensus 127 Il~~L~~ 133 (535)
|+..|.-
T Consensus 105 l~~nL~t 111 (416)
T PF10923_consen 105 LMRNLST 111 (416)
T ss_pred HHHhcCC
Confidence 9888864
No 434
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.36 E-value=0.052 Score=50.77 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=26.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVn 113 (535)
+..+++.|++|+||||+++.+.+.+. ...++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34688999999999999999999885 3355654
No 435
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=94.36 E-value=0.055 Score=52.26 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=37.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc----cCCHHHHHHHHHHHHhhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS----CYSPRILFESILNQLLLH 134 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~----~~s~r~l~~~Il~~L~~~ 134 (535)
.+-|+|..|+||||+.+.+.+.++.++ ++|.. .+.+..++..|.+.++..
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg~~v--idaD~i~~~l~~~~~~~~~i~~~fG~~ 61 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLNLNV--VCADTISREITKKPSVIKKIAEKFGDE 61 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeccHHHHHHHCchHHHHHHHHHhCHH
Confidence 377999999999999999998888775 45443 234445777888777654
No 436
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.36 E-value=0.074 Score=52.16 Aligned_cols=60 Identities=13% Similarity=0.008 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHhc----c-CCCC-C-CeEEECCCCCCHHHHHHHHHHhcCC---CeEE-EeccccCCHH
Q 009415 62 GRRVQILELLRLLGT----L-NSSM-P-PLFVYGSASTGKTSIIIQVFRHLSR---PFVY-TSCLSCYSPR 121 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~----~-~~~~-~-~l~I~G~~GTGKTs~v~~vl~~l~~---~~~y-Vnc~~~~s~r 121 (535)
.|++++..++..|.. . .... + .+-|.|++|+||||+++.+...+.. .... |.+...+.+.
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~ 77 (229)
T PRK09270 7 YRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDN 77 (229)
T ss_pred cChHhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCH
Confidence 466776665555533 1 1222 2 3669999999999999999988752 2222 6666655443
No 437
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.35 E-value=0.032 Score=50.87 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=22.9
Q ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 86 VYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 86 I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
|.||||+||||+.+.+.+.+++. +|++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eech
Confidence 68999999999999999999754 4553
No 438
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.32 E-value=0.041 Score=52.12 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=23.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~ 108 (535)
.++|.||+|+||||+++.+...++..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCe
Confidence 58899999999999999998887654
No 439
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.29 E-value=0.26 Score=51.98 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=28.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc----C-CCeEEEecccc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL----S-RPFVYTSCLSC 117 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l----~-~~~~yVnc~~~ 117 (535)
...+.+.||+|+||||++..++..+ + .++.+|.+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3468899999999999999998753 3 35667776654
No 440
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.28 E-value=0.3 Score=52.76 Aligned_cols=45 Identities=7% Similarity=0.136 Sum_probs=31.4
Q ss_pred CCcEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 186 NGKMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 186 ~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
++.+++|||||=..=.|-++...+..++..+.. ....+|+|++.+
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~----rG~~vvviaHRP 532 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA----RGGTVVVIAHRP 532 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH----cCCEEEEEecCH
Confidence 678999999998865554433455566655443 367888898875
No 441
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.27 E-value=0.053 Score=51.16 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=29.4
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYS 119 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s 119 (535)
|.|.|++|+||||+++.+...++ .....|++...+-
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 67999999999999999999874 5677777666553
No 442
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.27 E-value=0.045 Score=56.21 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=28.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
..++|.||+|+|||+++..+.++++..++..+++++
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 358899999999999999999999866554444444
No 443
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.26 E-value=0.023 Score=54.56 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFR 103 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~ 103 (535)
..++|.||.|+||||+++.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3589999999999999999984
No 444
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.23 E-value=0.6 Score=50.30 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=28.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCY 118 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~ 118 (535)
..+.|.||+|+||||++..++..+ +.++++|+|....
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 357899999999999988877543 3578888886643
No 445
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.22 E-value=0.04 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhc
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l 105 (535)
++|.|++|+||||+++.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999999754
No 446
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.22 E-value=0.038 Score=57.70 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=24.3
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
...+++|.|++|+||||++++++..+.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 356899999999999999999998875
No 447
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.19 E-value=0.066 Score=54.87 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009415 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (535)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~ 116 (535)
...+..-+......+..+.|.|++|+||||++..+...+ +.++..|.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 344444443333345568899999999999999998765 56677777653
No 448
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.18 E-value=0.05 Score=52.49 Aligned_cols=36 Identities=25% Similarity=0.578 Sum_probs=28.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s 119 (535)
.+|+||+|||||.+.-.+.+..+.+++..+-++|+.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 579999999999999999999999999999888874
No 449
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.15 E-value=0.054 Score=52.02 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=24.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.++|.|.||+||||+++.+.+.++..+
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 478999999999999999999987644
No 450
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.14 E-value=0.031 Score=56.15 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=23.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..+++|.|++|+||||+++++++.+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ceEEEEECCCccccchHHHHHhhhcc
Confidence 46899999999999999999999875
No 451
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.14 E-value=0.054 Score=53.82 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=25.9
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC---CCeEEEec
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLS---RPFVYTSC 114 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc 114 (535)
|++.|+||+||||+++.+.+.++ ..+++++-
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 68999999999999999998873 56666653
No 452
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.14 E-value=0.045 Score=56.93 Aligned_cols=27 Identities=30% Similarity=0.472 Sum_probs=24.5
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
...+++|.|++|+||||++++++..+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999999875
No 453
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.13 E-value=0.21 Score=49.34 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=32.1
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
++-+|||||--.-.+..+...++..+.+|.+. .+.++|+++.+.
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~---~~~tii~~tHd~ 199 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEE---GGKTIIIVTHDL 199 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc---CCCeEEEEeCcH
Confidence 46799999998887655555666666666554 247899999886
No 454
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.11 E-value=0.055 Score=48.75 Aligned_cols=26 Identities=15% Similarity=0.531 Sum_probs=22.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
++|.||+|+|||++++.+++.+...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 68999999999999999999875443
No 455
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.08 E-value=0.073 Score=51.29 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=28.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC-CCeEEEeccccC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS-RPFVYTSCLSCY 118 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~-~~~~yVnc~~~~ 118 (535)
.+.|.|++|+||||+++.+.+.++ ..+.+++....+
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 478999999999999999999985 345566665543
No 456
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.07 E-value=0.094 Score=58.13 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.++..++|.|++|+|||+++|++..-.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356679999999999999999999764
No 457
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.05 E-value=0.064 Score=54.19 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=24.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+.+-|+|.||.|+||||++-++++.++
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 345699999999999999999999886
No 458
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.03 E-value=0.046 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
.++|.|++|+||||+++.++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999988753
No 459
>PHA02774 E1; Provisional
Probab=94.03 E-value=0.099 Score=57.61 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=28.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCC-eEEEec
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRP-FVYTSC 114 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~-~~yVnc 114 (535)
.+++||||||||||.+.-++++.++-. +.+||.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 369999999999999999999998644 457885
No 460
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.02 E-value=0.12 Score=63.45 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=94.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
-++.|-||.|+|||+++..+.+..+..++.||--+..+.+.+..+-. .. .+|-. .+.+ -.+
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~---~~-----~~g~l------~fre-----g~L 501 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYV---AD-----DNGDL------VFRE-----GVL 501 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhh---cC-----CCCCe------eeeh-----hHH
Confidence 37999999999999999999999999999999777766554433111 11 11110 1111 011
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcccccc---CCCcEEEEEEeCC-----
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLSDIL---KMPEVGMIFISST----- 233 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~---~~~~l~vI~Is~~----- 233 (535)
.. .++ +-..+||||+..-. .++|.+|.|+.+.- -+|+-+.++-...
T Consensus 502 V~----Alr-----------------~G~~~vlD~lnla~-----~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lf 555 (1856)
T KOG1808|consen 502 VQ----ALR-----------------NGDWIVLDELNLAP-----HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLF 555 (1856)
T ss_pred HH----HHH-----------------hCCEEEeccccccc-----hHHHHHHHhhhhhhccccccccceeeccCcchhhh
Confidence 21 111 23688899998653 68899999986651 1333332222111
Q ss_pred ---Cccccc------cCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhh
Q 009415 234 ---SPDTYH------SNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLR 283 (535)
Q Consensus 234 ---~~~~f~------~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~ 283 (535)
-+..++ +|.-...+..++|..-.++++..|+..+..-+.+|......++.
T Consensus 556 atqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~~i~~~~~~k~~~~~~ 614 (1856)
T KOG1808|consen 556 ATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEELEEILEHRCGIPPSYEKKMVQVMR 614 (1856)
T ss_pred hhccCccccchhhhhhhcccccchhhhhhhcCchhhhhhhcccccCCchHHHHHHHHhh
Confidence 112222 12212233689999999999999998877655666655544443
No 461
>PRK06761 hypothetical protein; Provisional
Probab=93.98 E-value=0.059 Score=54.58 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=26.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.++|.|++|+||||+++.+.+.+......+.+
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 48899999999999999999999765555544
No 462
>PRK14526 adenylate kinase; Provisional
Probab=93.98 E-value=0.056 Score=52.51 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
++|.|+||+||||+.+.+.+.++..++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 789999999999999999999876553
No 463
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.98 E-value=0.26 Score=54.53 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=27.5
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEec
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSC 114 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l~~--~~~yVnc 114 (535)
.++..+.|.|++|+||||+++.++..+.. -.+.+|.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 35567999999999999999999987652 2344543
No 464
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.97 E-value=0.06 Score=50.80 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=22.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.++|+||+|+||||+++.+++..+
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999999884
No 465
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=93.97 E-value=0.61 Score=44.23 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
-++.|...+-.++. +.+++|.+|+|+|||.+ +..+++.+
T Consensus 22 ~~~~Q~~~~~~~~~-----~~~~li~~~TG~GKT~~~~~~~l~~~ 61 (203)
T cd00268 22 PTPIQARAIPPLLS-----GRDVIGQAQTGSGKTAAFLIPILEKL 61 (203)
T ss_pred CCHHHHHHHHHHhc-----CCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 46677666666554 35799999999999965 44444443
No 466
>PLN02199 shikimate kinase
Probab=93.96 E-value=0.11 Score=52.70 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+++....-+.+. ....+|+|.|.+|+|||++.+.+.+.++.+++
T Consensus 88 ~Lk~~a~~i~~~-l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fI 131 (303)
T PLN02199 88 ILKRKAEEVKPY-LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFF 131 (303)
T ss_pred HHHHHHHHHHHH-cCCCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 344444444331 12458999999999999999999999987764
No 467
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.94 E-value=0.059 Score=41.64 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
..+|+|+.|+||||++.++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988655
No 468
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=93.93 E-value=0.07 Score=49.33 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHhccCCC--CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 63 RRVQILELLRLLGTLNSS--MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~--~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
|+.|...+..++...... .+.++|.+|+|+|||-++-.++..+..+++++ | .+ ..|.+...+.+
T Consensus 5 r~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~-~---p~-~~l~~Q~~~~~ 70 (184)
T PF04851_consen 5 RPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIV-A---PN-ISLLEQWYDEF 70 (184)
T ss_dssp -HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEE-E---SS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEe-c---CH-HHHHHHHHHHH
Confidence 566666666666432222 46799999999999988887666654444443 3 22 24566555555
No 469
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=93.89 E-value=0.064 Score=54.52 Aligned_cols=35 Identities=23% Similarity=0.579 Sum_probs=28.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~ 118 (535)
++|.||+|+|||+++..+.+.++..++.++.+++|
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY 36 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIY 36 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhee
Confidence 68999999999999999999998766555544444
No 470
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.82 E-value=0.11 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=19.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
-+++++||||||||.+++.+-.-|.
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCC
Confidence 4799999999999999999998764
No 471
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.80 E-value=0.063 Score=48.63 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeE-EEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFV-YTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~-yVnc 114 (535)
-+.|.|+.++||||+++.+++.| +.+.+ +.++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 47899999999999999999886 45666 4444
No 472
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.13 Score=54.22 Aligned_cols=52 Identities=27% Similarity=0.353 Sum_probs=40.2
Q ss_pred HHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccC
Q 009415 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCY 118 (535)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~~ 118 (535)
+.+|-+.|+...-++..++|-|.||.||||++.+++..+. -++.||..-|..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~ 132 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESL 132 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCH
Confidence 4455566666544566799999999999999999998873 479999977653
No 473
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.77 E-value=0.25 Score=46.08 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.|+.|+||||+++.++..+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 445688999999999999999997764
No 474
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=93.76 E-value=0.051 Score=59.34 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=18.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
....|+||||||||.++..++..+
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~ql 225 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEIISQL 225 (649)
T ss_pred CceEeeCCCCCCceeeHHHHHHHH
Confidence 568899999999996666666543
No 475
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.72 E-value=0.17 Score=52.60 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~ 115 (535)
.....|...+.+.......+-|.|+||+||||++..+...+ +.+++.|+..
T Consensus 40 ~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D 93 (332)
T PRK09435 40 ALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD 93 (332)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34455555554422223347799999999999999977665 4566666654
No 476
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.70 E-value=0.36 Score=44.78 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.|+.|+||||+++.++..+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445688999999999999999998764
No 477
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.68 E-value=0.083 Score=49.31 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=28.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCL 115 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~ 115 (535)
+..++|.|++|+||||+.+.+...+. ..+.+++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 34588999999999999999998873 456677764
No 478
>PTZ00424 helicase 45; Provisional
Probab=93.66 E-value=0.41 Score=50.75 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHH-HHHHHhc
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL 105 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v-~~vl~~l 105 (535)
+.-|...+..++.. .++++.+|+|+|||.+. ..+++.+
T Consensus 52 ~~~Q~~ai~~i~~~-----~d~ii~apTGsGKT~~~~l~~l~~~ 90 (401)
T PTZ00424 52 SAIQQRGIKPILDG-----YDTIGQAQSGTGKTATFVIAALQLI 90 (401)
T ss_pred CHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHh
Confidence 56777777776644 46889999999999653 3455554
No 479
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.64 E-value=0.12 Score=52.95 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=32.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~ 118 (535)
+-++|.||+++|||.+.-.+++.++..++-++-+++|
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvY 40 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVY 40 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhc
Confidence 4589999999999999999999999888888766654
No 480
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.64 E-value=0.21 Score=61.97 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.|...+..++.. +-..++|.|.+|||||++++.+++.+
T Consensus 970 ~~Q~~Av~~il~s---~dr~~~I~G~AGTGKTT~l~~v~~~~ 1008 (1747)
T PRK13709 970 SGQRAATRMILES---TDRFTVVQGYAGVGKTTQFRAVMSAV 1008 (1747)
T ss_pred HHHHHHHHHHHhC---CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5566666666654 13478999999999999999998775
No 481
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.63 E-value=0.082 Score=51.06 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.7
Q ss_pred CCeEEECCCCCCHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVF 102 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl 102 (535)
..++|.||.|+|||++++.+.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999875
No 482
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.63 E-value=0.043 Score=53.56 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=18.3
Q ss_pred CCeEEECCCCCCHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVF 102 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl 102 (535)
..++|||+||+|||++++.+-
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 348999999999999998873
No 483
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.60 E-value=0.37 Score=53.93 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=27.7
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEec
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSC 114 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l~~--~~~yVnc 114 (535)
.++..+.|.|++|+||||+++.++..+.. -.+++|-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 34567999999999999999999988752 2345543
No 484
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=93.59 E-value=0.25 Score=49.65 Aligned_cols=85 Identities=24% Similarity=0.426 Sum_probs=50.5
Q ss_pred CHHHHhhcCCChHHHHHHHHHHHhccC-CCCCCeEEECCCCCCHHHHHHHHHHh------cCCCeEEEeccccCCHHHHH
Q 009415 52 SLDDLLSRFPGRRVQILELLRLLGTLN-SSMPPLFVYGSASTGKTSIIIQVFRH------LSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 52 ~~~~l~~~~p~Re~qi~~L~~ll~~~~-~~~~~l~I~G~~GTGKTs~v~~vl~~------l~~~~~yVnc~~~~s~r~l~ 124 (535)
+++-+..-+..|..-......-+.... .+-.++++.||.|.|||.+.+.+-+. +.-+++.|||.....-
T Consensus 178 tl~~lksgiatrnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd---- 253 (531)
T COG4650 178 TLDFLKSGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD---- 253 (531)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc----
Confidence 344444444444443333333222211 23457999999999999999998753 4568999999876432
Q ss_pred HHHHHHHhhccccccCC
Q 009415 125 ESILNQLLLHKKNAFNG 141 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g 141 (535)
...+.|.++.+....|
T Consensus 254 -~amsalfghvkgaftg 269 (531)
T COG4650 254 -TAMSALFGHVKGAFTG 269 (531)
T ss_pred -hHHHHHHhhhcccccc
Confidence 2344555554443333
No 485
>PLN02748 tRNA dimethylallyltransferase
Probab=93.56 E-value=0.25 Score=53.60 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=26.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
+.++|.||+|+|||++...+...++.. .|||+
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~~~e--ii~~D 54 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHFPVE--IINAD 54 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCee--EEcCc
Confidence 358999999999999999999998744 45554
No 486
>PHA02542 41 41 helicase; Provisional
Probab=93.55 E-value=0.49 Score=51.61 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=32.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQ 130 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~ 130 (535)
+..++|.|.||+|||+++..++... +.+++|+++-. +...+..+++..
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM--~~~ql~~Rl~a~ 240 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEM--AEEVIAKRIDAN 240 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 3458899999999999999888664 56788887532 233344444433
No 487
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.48 E-value=0.054 Score=52.73 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhc
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l 105 (535)
++|+|+||+|||+.++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999886
No 488
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.48 E-value=0.54 Score=51.62 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=28.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCY 118 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~ 118 (535)
+..+.|.|++|+||||++..+...+ +.++.+|++....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 4468899999999999998888653 2467788876543
No 489
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.47 E-value=0.42 Score=44.84 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=27.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEecc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCL 115 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~ 115 (535)
++..+.|.|++|+||||+++.+...+. .--++++..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~ 61 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 455688999999999999999987654 224556543
No 490
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.47 E-value=0.27 Score=49.54 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=32.3
Q ss_pred HHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
+..+.+.|.. +.+++++.|..|+||.++++-+.--.+..+..+.
T Consensus 20 i~ri~RvL~~---~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~ 63 (268)
T PF12780_consen 20 IARISRVLSQ---PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIE 63 (268)
T ss_dssp HHHHHHHHCS---TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TT
T ss_pred HHHHHHHHcC---CCCCeEEecCCCccHHHHHHHHHHHhccceEEEE
Confidence 5556666655 4578999999999999999988766665554443
No 491
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.46 E-value=0.1 Score=57.17 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
--++++..|..++.. +.+.++|.||+|+||||++.++++.+.
T Consensus 226 ~~~~~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 226 MSPELLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 346677777777654 244688999999999999999998875
No 492
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.072 Score=49.36 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=26.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
-++|.|-||+||||+++.+.+.+ +.+-+||
T Consensus 6 vvvitGVpGvGKTTVl~~~~~~l-~~~~ivN 35 (189)
T COG2019 6 VVVITGVPGVGKTTVLKIALKEL-VKHKIVN 35 (189)
T ss_pred EEEEEcCCCCChHHHHHHHHHHH-hhceeee
Confidence 47899999999999999999999 6666777
No 493
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.42 E-value=0.13 Score=53.68 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=33.1
Q ss_pred cCCChHHHHHHHH-HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 59 RFPGRRVQILELL-RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 59 ~~p~Re~qi~~L~-~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+.|-++....|. .++.+ ....++|.|++|||||++++.+...+.
T Consensus 5 ~ivgq~~~~~al~~~~~~~---~~g~vli~G~~G~gKttl~r~~~~~~~ 50 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDP---KIGGVMVMGDRGTGKSTAVRALAALLP 50 (337)
T ss_pred ccccHHHHHHHHHHHhcCC---CCCeEEEEcCCCCCHHHHHHHHHHhhc
Confidence 3455666666653 33333 346799999999999999999998874
No 494
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=93.42 E-value=0.4 Score=52.10 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhcC
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHLS 106 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l~ 106 (535)
.-|...+-.++. +..+++.+|+|||||.+ +..+++.+.
T Consensus 29 ~iQ~~ai~~~l~-----g~dvi~~a~TGsGKT~a~~lpil~~l~ 67 (460)
T PRK11776 29 PIQAQSLPAILA-----GKDVIAQAKTGSGKTAAFGLGLLQKLD 67 (460)
T ss_pred HHHHHHHHHHhc-----CCCEEEECCCCCcHHHHHHHHHHHHhh
Confidence 445555554443 34799999999999954 555666653
No 495
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.41 E-value=0.07 Score=52.81 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=22.5
Q ss_pred EECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009415 86 VYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (535)
Q Consensus 86 I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~ 115 (535)
|.||+|+||||.++.+-+.+ +.+++.||.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 67999999999999998876 4678888854
No 496
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.41 E-value=0.68 Score=48.88 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=30.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s 119 (535)
..+.|.||+|+||||++..+...+ +.++.+|+|+...+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 357899999999999999988655 46788888876654
No 497
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.40 E-value=0.064 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.++|.||+|+||||++..++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998875
No 498
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.38 E-value=0.4 Score=47.22 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.8
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---------------CCCeEEEeccc
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---------------SRPFVYTSCLS 116 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---------------~~~~~yVnc~~ 116 (535)
-+|.|++|+|||+++..++-.. +.+++|+++-+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 4799999999999999988542 24578888654
No 499
>PRK14529 adenylate kinase; Provisional
Probab=93.38 E-value=0.069 Score=52.31 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=25.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|.||||+||||+.+.+.+.+++.++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 3789999999999999999999987764
No 500
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=93.35 E-value=0.34 Score=56.19 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=74.2
Q ss_pred HHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHH-HHhc--CCCeEEEecccc--CCHHHHHHHHHHHHhhccccccCC
Q 009415 67 ILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQV-FRHL--SRPFVYTSCLSC--YSPRILFESILNQLLLHKKNAFNG 141 (535)
Q Consensus 67 i~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~v-l~~l--~~~~~yVnc~~~--~s~r~l~~~Il~~L~~~~~~~~~g 141 (535)
.+++...+.. -+.++|.|.+||||||-|=++ ++.. +-+.+-|=|.+- .++-.+.+++.... ++.....-|
T Consensus 178 r~~Il~~i~~----~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER-~~~~g~~VG 252 (924)
T KOG0920|consen 178 RDTILDAIEE----NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKER-GESLGEEVG 252 (924)
T ss_pred HHHHHHHHHh----CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHh-ccccCCeee
Confidence 3455555554 357999999999999766554 4442 125666667654 35666777777776 222222334
Q ss_pred CCC---CcCCCChh-HHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHc-c
Q 009415 142 YSS---AKRCEKPS-DFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG-L 216 (535)
Q Consensus 142 ~~~---~~r~~~~~-~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~r-L 216 (535)
|.. .++..... -|.- -.-.|..+.. +..-.....||+||++.= +.+ .++|-.+++ +
T Consensus 253 Yqvrl~~~~s~~t~L~fcT-tGvLLr~L~~---------------~~~l~~vthiivDEVHER-~i~--~DflLi~lk~l 313 (924)
T KOG0920|consen 253 YQVRLESKRSRETRLLFCT-TGVLLRRLQS---------------DPTLSGVTHIIVDEVHER-SIN--TDFLLILLKDL 313 (924)
T ss_pred EEEeeecccCCceeEEEec-HHHHHHHhcc---------------CcccccCceeeeeeEEEc-cCC--cccHHHHHHHH
Confidence 421 11111100 0100 0011111111 011223456779999843 223 455544333 3
Q ss_pred ccccCCCcEEEEEEeCCCcc
Q 009415 217 SDILKMPEVGMIFISSTSPD 236 (535)
Q Consensus 217 ~E~~~~~~l~vI~Is~~~~~ 236 (535)
-.. .|.+.||+.|.+...
T Consensus 314 L~~--~p~LkvILMSAT~da 331 (924)
T KOG0920|consen 314 LPR--NPDLKVILMSATLDA 331 (924)
T ss_pred hhh--CCCceEEEeeeecch
Confidence 333 378999999988633
Done!