Query 009415
Match_columns 535
No_of_seqs 247 out of 1307
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3te6_A Regulatory protein SIR3 99.9 4.9E-23 1.7E-27 209.7 10.3 176 58-268 20-211 (318)
2 2v1u_A Cell division control p 99.8 3.6E-18 1.2E-22 177.2 14.5 230 42-304 2-254 (387)
3 2qby_B CDC6 homolog 3, cell di 99.7 1.3E-16 4.5E-21 165.8 19.7 225 43-304 4-250 (384)
4 1fnn_A CDC6P, cell division co 99.7 4E-16 1.4E-20 162.1 16.6 175 55-267 14-205 (389)
5 2qby_A CDC6 homolog 1, cell di 99.7 4E-16 1.4E-20 161.4 15.3 180 54-267 16-209 (386)
6 1w5s_A Origin recognition comp 99.6 5.9E-15 2E-19 154.6 17.2 180 54-267 18-227 (412)
7 1jbk_A CLPB protein; beta barr 99.4 6.4E-13 2.2E-17 122.9 10.6 152 58-264 22-194 (195)
8 2chg_A Replication factor C sm 99.4 7.1E-12 2.4E-16 118.6 15.4 180 59-303 18-208 (226)
9 2qen_A Walker-type ATPase; unk 99.3 1.5E-11 5E-16 125.4 16.1 180 57-266 11-214 (350)
10 1ofh_A ATP-dependent HSL prote 99.3 1.8E-11 6.1E-16 123.0 14.8 67 53-119 10-88 (310)
11 3h4m_A Proteasome-activating n 99.3 1.2E-11 4E-16 123.4 12.9 159 59-267 18-200 (285)
12 2fna_A Conserved hypothetical 99.3 4.4E-11 1.5E-15 122.0 17.4 178 56-266 11-220 (357)
13 3syl_A Protein CBBX; photosynt 99.3 9.6E-12 3.3E-16 125.3 11.6 157 55-267 28-216 (309)
14 1sxj_A Activator 1 95 kDa subu 99.3 4.8E-12 1.6E-16 137.5 9.1 173 49-267 34-221 (516)
15 4b4t_J 26S protease regulatory 99.3 3E-10 1E-14 118.4 21.0 159 59-267 149-331 (405)
16 3uk6_A RUVB-like 2; hexameric 99.3 5.1E-11 1.7E-15 123.0 15.1 184 58-267 44-271 (368)
17 3vfd_A Spastin; ATPase, microt 99.3 5.8E-11 2E-15 124.2 15.5 158 58-267 115-294 (389)
18 3eie_A Vacuolar protein sortin 99.2 8.7E-11 3E-15 119.7 15.3 157 59-267 19-196 (322)
19 2qz4_A Paraplegin; AAA+, SPG7, 99.2 1.6E-10 5.5E-15 113.3 16.3 159 59-267 7-189 (262)
20 3pfi_A Holliday junction ATP-d 99.2 1.7E-10 5.7E-15 117.9 16.6 151 48-267 23-196 (338)
21 1d2n_A N-ethylmaleimide-sensit 99.2 1.2E-10 4.1E-15 115.5 14.9 160 57-267 32-211 (272)
22 1l8q_A Chromosomal replication 99.2 1.1E-10 3.6E-15 118.9 14.6 196 36-304 5-213 (324)
23 3hu3_A Transitional endoplasmi 99.2 9.1E-11 3.1E-15 126.4 14.4 161 59-269 205-386 (489)
24 2qp9_X Vacuolar protein sortin 99.2 1.4E-10 4.9E-15 119.9 14.3 157 59-267 52-229 (355)
25 1njg_A DNA polymerase III subu 99.2 1.1E-11 3.7E-16 118.7 5.2 170 58-267 23-197 (250)
26 1iqp_A RFCS; clamp loader, ext 99.2 8.3E-11 2.8E-15 118.9 12.0 180 59-303 26-216 (327)
27 2chq_A Replication factor C sm 99.2 6.5E-11 2.2E-15 119.2 11.1 186 49-303 12-208 (319)
28 3u61_B DNA polymerase accessor 99.2 1.9E-10 6.7E-15 116.8 14.7 145 59-265 27-175 (324)
29 1sxj_B Activator 1 37 kDa subu 99.2 7.6E-11 2.6E-15 118.9 11.6 149 59-267 22-178 (323)
30 1hqc_A RUVB; extended AAA-ATPa 99.2 8.3E-11 2.8E-15 119.2 11.6 145 59-267 13-180 (324)
31 3b9p_A CG5977-PA, isoform A; A 99.2 5E-10 1.7E-14 112.3 17.0 157 59-267 22-201 (297)
32 3d8b_A Fidgetin-like protein 1 99.2 3.5E-10 1.2E-14 117.0 16.1 194 58-305 84-301 (357)
33 4b4t_L 26S protease subunit RP 99.2 9E-10 3.1E-14 116.4 18.5 163 51-266 178-363 (437)
34 4b4t_I 26S protease regulatory 99.2 1.4E-09 4.7E-14 114.0 19.5 160 59-267 183-365 (437)
35 3hws_A ATP-dependent CLP prote 99.1 3.9E-10 1.3E-14 116.7 14.2 64 54-117 11-87 (363)
36 3pvs_A Replication-associated 99.1 6.3E-10 2.2E-14 118.6 15.6 150 48-267 20-177 (447)
37 4fcw_A Chaperone protein CLPB; 99.1 9.2E-10 3.1E-14 110.8 15.7 166 54-266 13-227 (311)
38 4b4t_M 26S protease regulatory 99.1 1.7E-09 5.6E-14 114.3 17.6 159 59-266 182-363 (434)
39 4b4t_H 26S protease regulatory 99.1 2.1E-09 7.2E-14 113.6 18.3 159 59-266 210-391 (467)
40 1xwi_A SKD1 protein; VPS4B, AA 99.1 1.1E-09 3.7E-14 111.8 15.6 157 59-267 13-191 (322)
41 3cf0_A Transitional endoplasmi 99.1 2.3E-09 7.9E-14 108.1 16.9 159 59-267 16-198 (301)
42 1um8_A ATP-dependent CLP prote 99.1 1.1E-09 3.8E-14 113.8 15.0 65 54-118 17-109 (376)
43 4b4t_K 26S protease regulatory 99.1 3E-09 1E-13 112.2 18.1 158 59-266 173-355 (428)
44 2p65_A Hypothetical protein PF 99.1 4.5E-10 1.5E-14 103.4 10.4 55 58-114 22-86 (187)
45 1jr3_A DNA polymerase III subu 99.1 1.8E-10 6.2E-15 118.8 8.1 200 59-303 17-225 (373)
46 2z4s_A Chromosomal replication 99.1 6E-10 2.1E-14 118.6 12.3 165 81-302 130-309 (440)
47 1sxj_D Activator 1 41 kDa subu 99.0 1.4E-09 4.9E-14 111.1 14.2 164 49-267 32-204 (353)
48 2zan_A Vacuolar protein sortin 99.0 1.6E-09 5.4E-14 115.5 13.9 157 59-267 135-313 (444)
49 1sxj_E Activator 1 40 kDa subu 99.0 6.8E-09 2.3E-13 106.4 17.8 220 49-304 9-242 (354)
50 1ojl_A Transcriptional regulat 99.0 2.4E-09 8.4E-14 108.3 13.7 160 59-265 3-187 (304)
51 1lv7_A FTSH; alpha/beta domain 99.0 4.1E-09 1.4E-13 103.4 14.8 159 59-267 13-194 (257)
52 2bjv_A PSP operon transcriptio 99.0 3.1E-09 1.1E-13 104.7 12.5 160 59-265 7-191 (265)
53 2c9o_A RUVB-like 1; hexameric 99.0 6.6E-09 2.3E-13 111.0 15.6 61 58-118 37-102 (456)
54 2ce7_A Cell division protein F 99.0 1.3E-08 4.3E-13 109.1 17.7 160 59-267 17-198 (476)
55 1a5t_A Delta prime, HOLB; zinc 98.9 1.5E-09 5.1E-14 111.2 9.3 169 60-268 4-180 (334)
56 1r6b_X CLPA protein; AAA+, N-t 98.9 3.9E-09 1.3E-13 119.7 13.2 165 55-266 455-664 (758)
57 3t15_A Ribulose bisphosphate c 98.9 1.8E-09 6E-14 108.7 9.2 35 83-117 38-72 (293)
58 1qvr_A CLPB protein; coiled co 98.9 3.2E-09 1.1E-13 122.0 12.4 154 58-266 170-343 (854)
59 3pxi_A Negative regulator of g 98.9 3.2E-09 1.1E-13 120.5 11.8 152 54-266 487-673 (758)
60 3cf2_A TER ATPase, transitiona 98.9 9.4E-09 3.2E-13 116.1 13.8 138 82-268 239-385 (806)
61 1sxj_C Activator 1 40 kDa subu 98.9 2.5E-08 8.6E-13 102.1 15.6 155 48-267 19-181 (340)
62 2r62_A Cell division protease 98.9 3.5E-09 1.2E-13 104.4 8.6 138 81-268 44-196 (268)
63 3co5_A Putative two-component 98.9 6.1E-10 2.1E-14 99.8 2.6 57 59-116 5-61 (143)
64 3bos_A Putative DNA replicatio 98.8 1E-09 3.6E-14 105.4 3.5 169 65-302 38-220 (242)
65 1qvr_A CLPB protein; coiled co 98.8 8.4E-09 2.9E-13 118.5 10.3 164 56-266 556-768 (854)
66 3n70_A Transport activator; si 98.8 7.9E-09 2.7E-13 92.7 7.5 59 59-118 2-63 (145)
67 2r44_A Uncharacterized protein 98.8 6.4E-09 2.2E-13 105.9 6.8 63 55-121 24-86 (331)
68 3pxg_A Negative regulator of g 98.7 2.5E-08 8.6E-13 106.8 10.1 140 59-268 181-338 (468)
69 1in4_A RUVB, holliday junction 98.7 2.2E-07 7.4E-12 95.0 16.2 63 48-114 19-84 (334)
70 1ixz_A ATP-dependent metallopr 98.7 1.3E-07 4.5E-12 92.4 13.2 33 83-115 51-83 (254)
71 1r6b_X CLPA protein; AAA+, N-t 98.7 1E-07 3.5E-12 108.0 14.2 153 58-266 186-360 (758)
72 1ypw_A Transitional endoplasmi 98.6 2E-07 6.9E-12 106.2 14.5 161 59-268 205-385 (806)
73 3m6a_A ATP-dependent protease 98.6 6.3E-08 2.1E-12 105.7 9.8 166 56-267 79-265 (543)
74 2dhr_A FTSH; AAA+ protein, hex 98.6 3.5E-07 1.2E-11 98.4 15.3 35 83-117 66-100 (499)
75 1iy2_A ATP-dependent metallopr 98.6 1.8E-07 6.1E-12 92.9 11.8 33 83-115 75-107 (278)
76 3pxi_A Negative regulator of g 98.6 1E-07 3.6E-12 108.0 10.1 139 59-267 181-337 (758)
77 2gno_A DNA polymerase III, gam 98.6 1.2E-07 4.2E-12 95.8 9.5 143 64-267 3-151 (305)
78 3nbx_X ATPase RAVA; AAA+ ATPas 98.6 1.7E-07 5.9E-12 100.9 11.0 161 53-267 17-195 (500)
79 3cf2_A TER ATPase, transitiona 98.5 1.4E-07 4.7E-12 106.6 8.7 137 82-268 512-661 (806)
80 2w58_A DNAI, primosome compone 98.5 2E-07 6.7E-12 87.7 7.8 51 65-115 36-91 (202)
81 2x8a_A Nuclear valosin-contain 98.4 3E-06 1E-10 84.2 14.8 136 83-267 46-190 (274)
82 3ec2_A DNA replication protein 98.4 5.5E-07 1.9E-11 83.2 8.7 53 63-115 19-76 (180)
83 1ypw_A Transitional endoplasmi 98.4 2.4E-08 8.4E-13 113.8 -0.7 137 80-268 510-661 (806)
84 2a5y_B CED-4; apoptosis; HET: 98.4 5.5E-06 1.9E-10 90.3 16.7 163 61-268 131-306 (549)
85 1z6t_A APAF-1, apoptotic prote 98.3 9.2E-06 3.1E-10 89.0 17.9 164 58-267 124-298 (591)
86 1g41_A Heat shock protein HSLU 98.3 1.4E-05 4.7E-10 84.5 18.2 64 54-117 11-86 (444)
87 1g8p_A Magnesium-chelatase 38 98.3 3.9E-06 1.3E-10 85.3 12.2 46 59-106 25-70 (350)
88 2qgz_A Helicase loader, putati 98.2 1E-06 3.5E-11 89.1 4.6 52 64-115 134-190 (308)
89 3sfz_A APAF-1, apoptotic pepti 98.1 2.3E-05 7.9E-10 92.6 16.6 165 58-267 124-298 (1249)
90 2kjq_A DNAA-related protein; s 98.1 2.1E-06 7.3E-11 77.3 5.2 38 80-117 35-75 (149)
91 1vt4_I APAF-1 related killer D 98.1 1.2E-05 4.3E-10 92.3 12.4 171 60-267 130-310 (1221)
92 4akg_A Glutathione S-transfera 97.8 0.00011 3.8E-09 92.5 13.3 140 81-266 1267-1429(2695)
93 3dzd_A Transcriptional regulat 97.7 0.00016 5.4E-09 74.8 12.0 160 59-265 130-313 (368)
94 1ny5_A Transcriptional regulat 97.6 0.00053 1.8E-08 71.3 13.2 159 60-265 139-322 (387)
95 2cvh_A DNA repair and recombin 97.6 0.00024 8.1E-09 66.9 9.3 46 79-124 18-63 (220)
96 4akg_A Glutathione S-transfera 97.4 0.00078 2.7E-08 84.9 13.7 53 65-121 633-685 (2695)
97 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00012 4.2E-09 73.9 5.4 33 82-114 124-156 (331)
98 3vkg_A Dynein heavy chain, cyt 97.4 0.0015 5E-08 83.2 15.5 140 81-265 1304-1466(3245)
99 1n0w_A DNA repair protein RAD5 97.3 0.00074 2.5E-08 64.5 9.8 51 73-123 16-75 (243)
100 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.0014 4.7E-08 61.9 10.9 45 80-126 22-69 (235)
101 1v5w_A DMC1, meiotic recombina 97.2 0.00088 3E-08 68.4 9.8 56 70-125 111-175 (343)
102 2r2a_A Uncharacterized protein 97.2 0.00054 1.8E-08 64.6 7.4 35 83-117 7-50 (199)
103 3lda_A DNA repair protein RAD5 97.2 0.00081 2.8E-08 70.2 9.3 42 80-121 177-227 (400)
104 2z43_A DNA repair and recombin 97.2 0.00053 1.8E-08 69.5 7.0 46 80-125 106-160 (324)
105 3f9v_A Minichromosome maintena 97.1 7.2E-05 2.5E-09 82.3 0.2 54 54-107 291-353 (595)
106 2dr3_A UPF0273 protein PH0284; 97.0 0.0015 5.1E-08 62.4 8.4 47 79-127 21-70 (247)
107 3hr8_A Protein RECA; alpha and 97.0 0.002 6.9E-08 66.1 9.4 41 80-120 60-103 (356)
108 3io5_A Recombination and repai 96.9 0.0014 4.8E-08 66.0 6.8 38 83-120 30-72 (333)
109 1xp8_A RECA protein, recombina 96.8 0.0042 1.4E-07 64.0 10.4 40 80-119 73-115 (366)
110 2zr9_A Protein RECA, recombina 96.8 0.0018 6.2E-08 66.3 7.4 41 80-120 60-103 (349)
111 4a74_A DNA repair and recombin 96.8 0.004 1.4E-07 58.7 9.0 41 80-120 24-73 (231)
112 1vec_A ATP-dependent RNA helic 96.8 0.0081 2.8E-07 55.7 10.9 39 62-105 26-65 (206)
113 3e1s_A Exodeoxyribonuclease V, 96.8 0.004 1.4E-07 68.1 10.0 37 64-105 192-228 (574)
114 2b8t_A Thymidine kinase; deoxy 96.8 0.00039 1.3E-08 66.8 1.7 34 81-114 12-48 (223)
115 1qde_A EIF4A, translation init 96.7 0.0044 1.5E-07 58.4 9.0 40 61-105 36-76 (224)
116 2i1q_A DNA repair and recombin 96.7 0.0023 7.9E-08 64.4 7.2 47 80-126 97-162 (322)
117 3vkg_A Dynein heavy chain, cyt 96.7 0.0098 3.4E-07 75.8 13.7 53 65-121 592-644 (3245)
118 1u94_A RECA protein, recombina 96.7 0.0025 8.6E-08 65.4 7.0 41 80-120 62-105 (356)
119 1tue_A Replication protein E1; 96.6 0.0013 4.3E-08 62.2 3.9 41 65-106 43-83 (212)
120 3cmu_A Protein RECA, recombina 96.6 0.0043 1.5E-07 76.1 9.4 52 70-121 1415-1470(2050)
121 2fz4_A DNA repair protein RAD2 96.5 0.018 6.1E-07 55.3 11.7 50 59-113 91-140 (237)
122 2gxq_A Heat resistant RNA depe 96.5 0.02 6.9E-07 52.9 11.7 40 61-105 23-63 (207)
123 1qhx_A CPT, protein (chloramph 96.5 0.0023 7.8E-08 58.1 4.8 32 83-114 5-36 (178)
124 1gvn_B Zeta; postsegregational 96.4 0.0031 1.1E-07 62.7 6.0 35 83-117 35-69 (287)
125 3b6e_A Interferon-induced heli 96.4 0.0057 2E-07 56.9 7.2 41 59-104 31-71 (216)
126 4b3f_X DNA-binding protein smu 96.4 0.0039 1.3E-07 69.1 6.9 38 64-105 192-229 (646)
127 2r6a_A DNAB helicase, replicat 96.3 0.013 4.5E-07 62.0 10.5 51 79-131 201-255 (454)
128 3bh0_A DNAB-like replicative h 96.3 0.013 4.6E-07 58.8 9.9 52 79-132 66-120 (315)
129 1jr3_D DNA polymerase III, del 96.3 0.012 4.1E-07 59.5 9.6 106 188-302 76-188 (343)
130 2oxc_A Probable ATP-dependent 96.3 0.017 5.8E-07 54.8 10.1 60 39-105 24-86 (230)
131 1pzn_A RAD51, DNA repair and r 96.3 0.024 8.2E-07 57.9 11.7 41 80-120 130-179 (349)
132 3trf_A Shikimate kinase, SK; a 96.2 0.0032 1.1E-07 57.5 4.1 30 81-110 5-34 (185)
133 1g5t_A COB(I)alamin adenosyltr 96.2 0.012 3.9E-07 55.2 7.7 135 81-241 28-170 (196)
134 2q6t_A DNAB replication FORK h 96.1 0.01 3.5E-07 62.6 8.3 53 79-133 198-254 (444)
135 3bor_A Human initiation factor 96.1 0.0073 2.5E-07 57.7 6.5 39 62-105 53-92 (237)
136 2iut_A DNA translocase FTSK; n 96.1 0.014 5E-07 63.2 9.3 75 188-267 343-422 (574)
137 3kb2_A SPBC2 prophage-derived 96.1 0.0035 1.2E-07 56.3 3.9 28 83-110 3-30 (173)
138 4a1f_A DNAB helicase, replicat 96.1 0.028 9.7E-07 57.1 10.9 52 79-132 44-98 (338)
139 1hv8_A Putative ATP-dependent 96.1 0.06 2.1E-06 53.9 13.3 41 61-105 28-69 (367)
140 1rz3_A Hypothetical protein rb 96.0 0.013 4.4E-07 54.7 7.5 57 61-117 1-61 (201)
141 3iij_A Coilin-interacting nucl 96.0 0.0045 1.5E-07 56.4 4.2 30 81-110 11-40 (180)
142 3vaa_A Shikimate kinase, SK; s 96.0 0.0046 1.6E-07 57.6 4.2 30 81-110 25-54 (199)
143 1nlf_A Regulatory protein REPA 95.9 0.016 5.3E-07 57.0 7.9 36 81-116 30-78 (279)
144 2j0s_A ATP-dependent RNA helic 95.9 0.041 1.4E-06 56.5 11.4 39 62-105 60-99 (410)
145 3fe2_A Probable ATP-dependent 95.9 0.057 2E-06 51.5 11.7 37 62-103 52-89 (242)
146 1q57_A DNA primase/helicase; d 95.8 0.017 6E-07 61.8 8.5 51 80-132 241-295 (503)
147 1zuh_A Shikimate kinase; alpha 95.8 0.0056 1.9E-07 55.1 4.0 31 80-110 6-36 (168)
148 2iyv_A Shikimate kinase, SK; t 95.8 0.0065 2.2E-07 55.5 4.4 29 82-110 3-31 (184)
149 2zts_A Putative uncharacterize 95.8 0.0084 2.9E-07 57.1 5.4 46 80-127 29-78 (251)
150 3lw7_A Adenylate kinase relate 95.8 0.0051 1.8E-07 54.9 3.7 27 83-110 3-29 (179)
151 1via_A Shikimate kinase; struc 95.8 0.0059 2E-07 55.4 3.9 28 82-109 5-32 (175)
152 2pl3_A Probable ATP-dependent 95.8 0.078 2.7E-06 50.1 12.0 31 62-97 48-78 (236)
153 1t6n_A Probable ATP-dependent 95.8 0.05 1.7E-06 50.9 10.5 59 40-105 15-76 (220)
154 3ber_A Probable ATP-dependent 95.7 0.029 1E-06 54.1 8.8 39 61-104 65-104 (249)
155 3tlx_A Adenylate kinase 2; str 95.7 0.01 3.5E-07 57.3 5.5 30 82-111 30-59 (243)
156 1kag_A SKI, shikimate kinase I 95.6 0.0083 2.9E-07 54.0 4.3 31 82-114 5-35 (173)
157 3ly5_A ATP-dependent RNA helic 95.6 0.11 3.7E-06 50.4 12.6 31 62-97 77-107 (262)
158 1u0j_A DNA replication protein 95.6 0.012 4.1E-07 57.8 5.4 26 82-107 105-130 (267)
159 3dkp_A Probable ATP-dependent 95.6 0.026 8.8E-07 53.9 7.8 54 47-105 35-91 (245)
160 1q0u_A Bstdead; DEAD protein, 95.6 0.035 1.2E-06 52.0 8.5 39 62-105 27-66 (219)
161 1zp6_A Hypothetical protein AT 95.5 0.0077 2.6E-07 55.2 3.7 35 81-115 9-43 (191)
162 2c95_A Adenylate kinase 1; tra 95.5 0.0075 2.6E-07 55.4 3.5 29 81-109 9-37 (196)
163 3eiq_A Eukaryotic initiation f 95.5 0.057 2E-06 55.3 10.6 40 61-105 62-102 (414)
164 1y63_A LMAJ004144AAA protein; 95.5 0.0072 2.5E-07 55.5 3.4 33 81-115 10-43 (184)
165 3cmw_A Protein RECA, recombina 95.5 0.016 5.6E-07 70.1 7.3 41 80-120 731-774 (1706)
166 1e6c_A Shikimate kinase; phosp 95.5 0.0095 3.3E-07 53.5 4.1 28 82-109 3-30 (173)
167 2rhm_A Putative kinase; P-loop 95.5 0.0082 2.8E-07 54.9 3.7 28 83-110 7-34 (193)
168 2ius_A DNA translocase FTSK; n 95.4 0.062 2.1E-06 57.6 10.8 75 188-267 297-376 (512)
169 1wrb_A DJVLGB; RNA helicase, D 95.4 0.19 6.6E-06 48.0 13.5 38 62-104 46-84 (253)
170 3dl0_A Adenylate kinase; phosp 95.4 0.01 3.6E-07 55.6 4.2 28 84-111 3-30 (216)
171 2z0m_A 337AA long hypothetical 95.4 0.12 4E-06 51.2 12.1 46 62-112 17-62 (337)
172 3cmu_A Protein RECA, recombina 95.4 0.027 9.3E-07 69.2 8.6 41 80-120 382-425 (2050)
173 1ex7_A Guanylate kinase; subst 95.4 0.01 3.5E-07 55.1 3.9 28 82-109 2-29 (186)
174 2p5t_B PEZT; postsegregational 95.4 0.016 5.4E-07 56.2 5.4 35 83-117 34-68 (253)
175 3cm0_A Adenylate kinase; ATP-b 95.3 0.0096 3.3E-07 54.3 3.6 27 83-109 6-32 (186)
176 3fb4_A Adenylate kinase; psych 95.3 0.011 3.7E-07 55.5 4.0 28 84-111 3-30 (216)
177 3t61_A Gluconokinase; PSI-biol 95.3 0.012 4.1E-07 54.6 4.3 36 82-119 19-54 (202)
178 1kht_A Adenylate kinase; phosp 95.3 0.0079 2.7E-07 54.9 2.9 24 83-106 5-28 (192)
179 3exa_A TRNA delta(2)-isopenten 95.3 0.027 9.1E-07 56.6 7.0 32 83-116 5-36 (322)
180 3k1j_A LON protease, ATP-depen 95.3 0.024 8.3E-07 62.2 7.3 45 58-106 41-85 (604)
181 2z0h_A DTMP kinase, thymidylat 95.3 0.023 7.9E-07 52.0 6.1 30 84-113 3-35 (197)
182 1tev_A UMP-CMP kinase; ploop, 95.3 0.01 3.6E-07 54.2 3.7 27 83-109 5-31 (196)
183 3iuy_A Probable ATP-dependent 95.3 0.15 5E-06 47.9 11.9 54 46-104 25-81 (228)
184 1ly1_A Polynucleotide kinase; 95.3 0.0089 3.1E-07 53.9 3.2 30 83-114 4-34 (181)
185 2vli_A Antibiotic resistance p 95.3 0.0085 2.9E-07 54.4 3.0 29 82-110 6-34 (183)
186 2v1x_A ATP-dependent DNA helic 95.3 0.043 1.5E-06 60.1 9.1 32 63-99 46-77 (591)
187 1aky_A Adenylate kinase; ATP:A 95.3 0.011 3.8E-07 55.7 3.9 29 81-109 4-32 (220)
188 2cdn_A Adenylate kinase; phosp 95.3 0.012 4.1E-07 54.6 4.0 28 83-110 22-49 (201)
189 2pt5_A Shikimate kinase, SK; a 95.2 0.013 4.5E-07 52.4 4.0 28 83-110 2-29 (168)
190 3fmo_B ATP-dependent RNA helic 95.2 0.017 5.7E-07 57.6 5.2 47 188-238 235-281 (300)
191 2pbr_A DTMP kinase, thymidylat 95.2 0.029 9.9E-07 51.1 6.4 30 84-113 3-35 (195)
192 3dm5_A SRP54, signal recogniti 95.2 0.14 4.9E-06 53.8 12.3 37 83-119 102-141 (443)
193 2gk6_A Regulator of nonsense t 95.1 0.023 7.9E-07 62.6 6.6 38 63-105 182-219 (624)
194 2bwj_A Adenylate kinase 5; pho 95.1 0.011 3.8E-07 54.3 3.4 31 82-114 13-43 (199)
195 1fuu_A Yeast initiation factor 95.1 0.067 2.3E-06 54.3 9.6 40 61-105 43-83 (394)
196 2ze6_A Isopentenyl transferase 95.1 0.013 4.5E-07 56.9 4.0 31 83-113 3-33 (253)
197 1zd8_A GTP:AMP phosphotransfer 95.1 0.012 4.2E-07 55.8 3.5 30 81-110 7-36 (227)
198 3foz_A TRNA delta(2)-isopenten 95.0 0.072 2.5E-06 53.4 9.2 31 83-115 12-42 (316)
199 1ukz_A Uridylate kinase; trans 95.0 0.014 4.7E-07 54.1 3.8 30 83-114 17-46 (203)
200 1zak_A Adenylate kinase; ATP:A 95.0 0.012 4.2E-07 55.5 3.4 28 81-108 5-32 (222)
201 1ak2_A Adenylate kinase isoenz 95.0 0.015 5.1E-07 55.5 4.0 28 82-109 17-44 (233)
202 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.017 5.7E-07 56.3 4.4 34 81-114 4-40 (260)
203 3be4_A Adenylate kinase; malar 95.0 0.012 4E-07 55.6 3.1 30 81-110 5-34 (217)
204 3sr0_A Adenylate kinase; phosp 95.0 0.014 4.8E-07 55.0 3.6 27 84-110 3-29 (206)
205 1qf9_A UMP/CMP kinase, protein 95.0 0.013 4.5E-07 53.4 3.4 27 83-109 8-34 (194)
206 3upu_A ATP-dependent DNA helic 95.0 0.016 5.4E-07 61.4 4.4 24 82-105 46-69 (459)
207 3kl4_A SRP54, signal recogniti 94.9 0.1 3.4E-06 54.8 10.3 35 83-117 99-136 (433)
208 2pez_A Bifunctional 3'-phospho 94.9 0.02 6.9E-07 52.0 4.4 33 82-114 6-41 (179)
209 3umf_A Adenylate kinase; rossm 94.9 0.016 5.4E-07 55.2 3.7 29 82-110 30-58 (217)
210 3uie_A Adenylyl-sulfate kinase 94.8 0.021 7.1E-07 53.0 4.4 34 81-114 25-61 (200)
211 1e4v_A Adenylate kinase; trans 94.8 0.017 5.7E-07 54.3 3.7 28 83-110 2-29 (214)
212 1nks_A Adenylate kinase; therm 94.8 0.01 3.5E-07 54.1 2.1 31 83-113 3-36 (194)
213 2jaq_A Deoxyguanosine kinase; 94.8 0.017 6E-07 53.1 3.7 28 83-110 2-29 (205)
214 4eun_A Thermoresistant glucoki 94.8 0.019 6.4E-07 53.3 3.9 37 81-119 29-65 (200)
215 2v54_A DTMP kinase, thymidylat 94.7 0.021 7.2E-07 52.7 4.2 33 82-114 5-38 (204)
216 1knq_A Gluconate kinase; ALFA/ 94.7 0.016 5.4E-07 52.3 3.2 36 82-119 9-44 (175)
217 3cmw_A Protein RECA, recombina 94.6 0.069 2.4E-06 64.8 9.2 120 81-233 1431-1567(1706)
218 2qor_A Guanylate kinase; phosp 94.6 0.023 7.9E-07 52.9 4.1 27 80-106 11-37 (204)
219 1w4r_A Thymidine kinase; type 94.6 0.035 1.2E-06 51.8 5.3 31 83-113 22-55 (195)
220 1svm_A Large T antigen; AAA+ f 94.5 0.038 1.3E-06 57.0 5.8 30 80-109 168-197 (377)
221 2xb4_A Adenylate kinase; ATP-b 94.5 0.022 7.5E-07 54.0 3.6 27 83-109 2-28 (223)
222 3crm_A TRNA delta(2)-isopenten 94.4 0.025 8.7E-07 57.0 4.2 32 83-114 7-38 (323)
223 2if2_A Dephospho-COA kinase; a 94.4 0.024 8.1E-07 52.6 3.7 29 83-112 3-31 (204)
224 3tau_A Guanylate kinase, GMP k 94.4 0.024 8.1E-07 53.2 3.7 26 81-106 8-33 (208)
225 3c8u_A Fructokinase; YP_612366 94.4 0.032 1.1E-06 52.2 4.4 53 65-117 6-61 (208)
226 1s2m_A Putative ATP-dependent 94.4 0.099 3.4E-06 53.3 8.6 60 39-105 21-83 (400)
227 1cke_A CK, MSSA, protein (cyti 94.3 0.027 9.3E-07 53.0 3.9 27 83-109 7-33 (227)
228 2plr_A DTMP kinase, probable t 94.3 0.023 7.9E-07 52.6 3.3 26 83-108 6-31 (213)
229 3pey_A ATP-dependent RNA helic 94.3 0.068 2.3E-06 54.1 7.2 42 61-105 27-69 (395)
230 2wjy_A Regulator of nonsense t 94.2 0.034 1.2E-06 63.0 5.0 38 63-105 358-395 (800)
231 2bbw_A Adenylate kinase 4, AK4 94.2 0.03 1E-06 53.7 4.0 29 81-109 27-55 (246)
232 2xzl_A ATP-dependent helicase 94.1 0.044 1.5E-06 62.1 5.8 37 64-105 363-399 (802)
233 3i5x_A ATP-dependent RNA helic 94.1 0.21 7.2E-06 53.7 10.9 33 62-97 95-127 (563)
234 3nwj_A ATSK2; P loop, shikimat 94.0 0.035 1.2E-06 54.0 4.1 30 81-110 48-77 (250)
235 1kgd_A CASK, peripheral plasma 94.0 0.032 1.1E-06 50.9 3.6 25 82-106 6-30 (180)
236 2db3_A ATP-dependent RNA helic 94.0 0.69 2.4E-05 48.1 14.4 46 188-237 203-249 (434)
237 3zvl_A Bifunctional polynucleo 94.0 0.057 1.9E-06 56.4 5.8 33 83-117 260-292 (416)
238 1uj2_A Uridine-cytidine kinase 93.9 0.044 1.5E-06 52.8 4.6 36 83-118 24-67 (252)
239 3ake_A Cytidylate kinase; CMP 93.9 0.038 1.3E-06 51.0 4.0 27 83-109 4-30 (208)
240 1sky_E F1-ATPase, F1-ATP synth 93.9 0.26 8.9E-06 52.1 10.7 48 81-128 151-203 (473)
241 1jjv_A Dephospho-COA kinase; P 93.8 0.038 1.3E-06 51.2 3.9 26 83-109 4-29 (206)
242 1xti_A Probable ATP-dependent 93.8 0.48 1.7E-05 47.8 12.4 51 50-105 17-70 (391)
243 4e22_A Cytidylate kinase; P-lo 93.7 0.043 1.5E-06 53.1 4.1 29 81-109 27-55 (252)
244 1m7g_A Adenylylsulfate kinase; 93.5 0.041 1.4E-06 51.4 3.5 33 81-113 25-61 (211)
245 1w36_D RECD, exodeoxyribonucle 93.5 0.046 1.6E-06 60.0 4.3 24 82-105 165-188 (608)
246 3ney_A 55 kDa erythrocyte memb 93.5 0.046 1.6E-06 51.1 3.7 25 82-106 20-44 (197)
247 3p32_A Probable GTPase RV1496/ 93.5 0.11 3.6E-06 53.1 6.7 53 64-116 62-117 (355)
248 4a4z_A Antiviral helicase SKI2 93.4 0.33 1.1E-05 56.4 11.6 37 61-102 39-75 (997)
249 3a00_A Guanylate kinase, GMP k 93.4 0.048 1.7E-06 49.9 3.7 24 83-106 3-26 (186)
250 2grj_A Dephospho-COA kinase; T 93.4 0.047 1.6E-06 50.8 3.6 33 83-117 14-46 (192)
251 3r20_A Cytidylate kinase; stru 93.4 0.046 1.6E-06 52.5 3.7 26 83-108 11-36 (233)
252 1uf9_A TT1252 protein; P-loop, 93.4 0.047 1.6E-06 50.2 3.6 30 83-115 10-39 (203)
253 1oyw_A RECQ helicase, ATP-depe 93.4 0.39 1.3E-05 51.6 11.4 48 187-236 138-186 (523)
254 3fht_A ATP-dependent RNA helic 93.4 0.058 2E-06 55.1 4.7 51 52-105 36-89 (412)
255 3a8t_A Adenylate isopentenyltr 93.4 0.04 1.4E-06 55.9 3.3 33 82-116 41-73 (339)
256 2wwf_A Thymidilate kinase, put 93.4 0.032 1.1E-06 51.8 2.4 26 82-107 11-36 (212)
257 2va8_A SSO2462, SKI2-type heli 93.4 0.069 2.4E-06 59.6 5.6 47 62-112 31-81 (715)
258 1nn5_A Similar to deoxythymidy 93.3 0.034 1.2E-06 51.7 2.5 25 82-106 10-34 (215)
259 2j41_A Guanylate kinase; GMP, 93.3 0.045 1.5E-06 50.5 3.3 25 81-105 6-30 (207)
260 3tr0_A Guanylate kinase, GMP k 93.3 0.053 1.8E-06 50.0 3.7 25 82-106 8-32 (205)
261 1ye8_A Protein THEP1, hypothet 93.3 0.045 1.6E-06 50.1 3.2 27 83-109 2-28 (178)
262 1xjc_A MOBB protein homolog; s 93.2 0.083 2.8E-06 48.1 4.8 35 81-115 4-41 (169)
263 1wp9_A ATP-dependent RNA helic 93.2 0.82 2.8E-05 47.0 13.2 41 59-105 7-47 (494)
264 2i4i_A ATP-dependent RNA helic 93.1 0.76 2.6E-05 46.8 12.7 38 61-103 37-75 (417)
265 3d3q_A TRNA delta(2)-isopenten 93.1 0.078 2.7E-06 53.8 4.9 33 83-117 9-41 (340)
266 2j9r_A Thymidine kinase; TK1, 93.1 0.17 5.9E-06 47.8 7.0 31 83-113 30-63 (214)
267 4a2p_A RIG-I, retinoic acid in 93.1 0.47 1.6E-05 50.4 11.4 38 60-102 6-43 (556)
268 1lvg_A Guanylate kinase, GMP k 93.1 0.054 1.9E-06 50.3 3.5 26 81-106 4-29 (198)
269 3eph_A TRNA isopentenyltransfe 93.1 0.04 1.4E-06 57.2 2.8 32 83-116 4-35 (409)
270 3sqw_A ATP-dependent RNA helic 93.0 0.63 2.1E-05 50.4 12.3 33 62-97 44-76 (579)
271 2yvu_A Probable adenylyl-sulfa 92.9 0.049 1.7E-06 49.7 2.9 32 82-113 14-48 (186)
272 2bdt_A BH3686; alpha-beta prot 92.8 0.061 2.1E-06 49.1 3.4 31 83-114 4-34 (189)
273 2qt1_A Nicotinamide riboside k 92.8 0.085 2.9E-06 48.9 4.4 35 83-118 23-57 (207)
274 2h92_A Cytidylate kinase; ross 92.8 0.081 2.8E-06 49.4 4.3 27 83-109 5-31 (219)
275 1vht_A Dephospho-COA kinase; s 92.7 0.072 2.5E-06 49.9 3.8 29 83-114 6-34 (218)
276 3asz_A Uridine kinase; cytidin 92.7 0.067 2.3E-06 49.7 3.5 34 83-116 8-41 (211)
277 1q3t_A Cytidylate kinase; nucl 92.6 0.078 2.7E-06 50.5 4.0 28 82-109 17-44 (236)
278 1s96_A Guanylate kinase, GMP k 92.5 0.074 2.5E-06 50.5 3.6 26 81-106 16-41 (219)
279 3fmp_B ATP-dependent RNA helic 92.4 0.094 3.2E-06 55.3 4.7 41 63-106 116-157 (479)
280 2xau_A PRE-mRNA-splicing facto 92.4 0.25 8.7E-06 55.7 8.4 35 66-104 98-132 (773)
281 2oap_1 GSPE-2, type II secreti 92.3 0.19 6.5E-06 53.9 7.0 64 46-113 229-294 (511)
282 3fdi_A Uncharacterized protein 92.3 0.093 3.2E-06 49.0 4.0 29 82-110 7-35 (201)
283 1a7j_A Phosphoribulokinase; tr 92.2 0.053 1.8E-06 53.8 2.3 36 83-118 7-45 (290)
284 1c9k_A COBU, adenosylcobinamid 92.2 0.097 3.3E-06 48.2 3.8 33 84-117 2-34 (180)
285 1ltq_A Polynucleotide kinase; 92.1 0.077 2.6E-06 52.3 3.4 31 83-114 4-34 (301)
286 1odf_A YGR205W, hypothetical 3 91.8 0.26 8.8E-06 48.8 6.8 43 83-125 33-81 (290)
287 1cr0_A DNA primase/helicase; R 91.8 0.29 9.9E-06 48.1 7.2 48 80-129 34-85 (296)
288 1z6g_A Guanylate kinase; struc 91.8 0.11 3.8E-06 48.9 3.9 25 81-105 23-47 (218)
289 2zj8_A DNA helicase, putative 91.8 0.12 4.1E-06 57.7 4.8 48 62-113 24-75 (720)
290 2p6r_A Afuhel308 helicase; pro 91.8 0.19 6.5E-06 55.9 6.4 45 188-235 138-183 (702)
291 1np6_A Molybdopterin-guanine d 91.7 0.098 3.3E-06 47.8 3.2 34 81-114 6-42 (174)
292 2ehv_A Hypothetical protein PH 91.6 0.074 2.5E-06 50.4 2.4 37 80-116 29-69 (251)
293 2xgj_A ATP-dependent RNA helic 91.3 0.62 2.1E-05 54.2 10.3 48 61-113 86-136 (1010)
294 2ga8_A Hypothetical 39.9 kDa p 91.3 0.21 7.1E-06 51.0 5.5 30 81-110 24-53 (359)
295 3fho_A ATP-dependent RNA helic 91.3 0.38 1.3E-05 51.3 7.9 45 188-236 259-303 (508)
296 1gtv_A TMK, thymidylate kinase 91.2 0.047 1.6E-06 50.7 0.6 23 84-106 3-25 (214)
297 2r8r_A Sensor protein; KDPD, P 91.2 0.28 9.4E-06 46.8 5.9 38 83-120 8-48 (228)
298 1znw_A Guanylate kinase, GMP k 91.2 0.13 4.4E-06 47.9 3.5 26 81-106 20-45 (207)
299 2f6r_A COA synthase, bifunctio 90.9 0.12 4E-06 50.9 3.2 31 83-116 77-107 (281)
300 4eaq_A DTMP kinase, thymidylat 90.9 0.13 4.3E-06 49.1 3.3 25 82-106 27-51 (229)
301 2ged_A SR-beta, signal recogni 90.9 0.18 6.3E-06 45.5 4.3 24 82-105 49-72 (193)
302 3l9o_A ATP-dependent RNA helic 90.9 1.3 4.5E-05 51.9 12.5 48 60-112 183-233 (1108)
303 1p9r_A General secretion pathw 90.8 0.24 8.1E-06 51.7 5.5 39 65-106 154-192 (418)
304 3gmt_A Adenylate kinase; ssgci 90.8 0.15 5.1E-06 48.8 3.6 27 84-110 11-37 (230)
305 1htw_A HI0065; nucleotide-bind 90.6 0.21 7.2E-06 44.7 4.3 26 80-105 32-57 (158)
306 2hf9_A Probable hydrogenase ni 90.4 0.22 7.4E-06 46.5 4.4 41 63-105 22-62 (226)
307 2eyu_A Twitching motility prot 90.4 0.13 4.5E-06 50.1 2.9 26 81-106 25-50 (261)
308 3kta_A Chromosome segregation 90.3 0.16 5.5E-06 45.8 3.3 24 83-106 28-51 (182)
309 3bgw_A DNAB-like replicative h 90.3 0.35 1.2E-05 50.9 6.3 51 79-131 195-248 (444)
310 1vma_A Cell division protein F 90.2 0.38 1.3E-05 48.0 6.3 53 65-117 82-143 (306)
311 3lnc_A Guanylate kinase, GMP k 90.2 0.11 3.6E-06 49.3 2.0 25 81-105 27-52 (231)
312 2wsm_A Hydrogenase expression/ 90.1 0.21 7.2E-06 46.4 4.1 50 64-115 15-66 (221)
313 1g8f_A Sulfate adenylyltransfe 90.0 0.2 6.7E-06 53.7 4.2 48 60-107 374-421 (511)
314 2v3c_C SRP54, signal recogniti 90.0 0.35 1.2E-05 50.7 6.0 50 68-117 79-138 (432)
315 3v9p_A DTMP kinase, thymidylat 89.9 0.41 1.4E-05 45.6 5.9 24 82-105 26-49 (227)
316 4gp7_A Metallophosphoesterase; 89.9 0.14 4.9E-06 46.1 2.6 22 81-102 9-30 (171)
317 2orw_A Thymidine kinase; TMTK, 89.9 0.17 5.6E-06 46.6 3.1 31 83-113 5-38 (184)
318 1x6v_B Bifunctional 3'-phospho 89.9 0.21 7.3E-06 54.8 4.4 31 83-113 54-87 (630)
319 2i3b_A HCR-ntpase, human cance 89.8 0.2 7E-06 46.2 3.6 23 83-105 3-25 (189)
320 3e70_C DPA, signal recognition 89.7 0.27 9.1E-06 49.6 4.7 34 83-116 131-167 (328)
321 2dyk_A GTP-binding protein; GT 89.7 0.16 5.4E-06 44.2 2.7 24 82-105 2-25 (161)
322 3hdt_A Putative kinase; struct 89.7 0.19 6.5E-06 47.8 3.4 27 83-109 16-42 (223)
323 2v9p_A Replication protein E1; 89.7 0.27 9.2E-06 49.1 4.6 27 79-105 124-150 (305)
324 3tqc_A Pantothenate kinase; bi 89.6 0.31 1E-05 49.1 5.0 35 84-118 95-134 (321)
325 1m8p_A Sulfate adenylyltransfe 89.5 0.25 8.6E-06 53.7 4.6 32 83-114 398-433 (573)
326 3e2i_A Thymidine kinase; Zn-bi 89.5 0.092 3.1E-06 49.8 0.9 38 188-234 101-138 (219)
327 3jvv_A Twitching mobility prot 89.4 0.16 5.3E-06 52.0 2.7 26 81-106 123-148 (356)
328 1nrj_B SR-beta, signal recogni 89.4 0.22 7.4E-06 46.2 3.5 25 81-105 12-36 (218)
329 2z83_A Helicase/nucleoside tri 89.4 0.63 2.2E-05 48.9 7.5 48 81-133 21-72 (459)
330 2qmh_A HPR kinase/phosphorylas 89.3 0.29 9.8E-06 45.8 4.2 24 83-106 36-59 (205)
331 1zu4_A FTSY; GTPase, signal re 89.3 0.58 2E-05 46.9 6.8 35 83-117 107-144 (320)
332 4a2q_A RIG-I, retinoic acid in 89.3 1.9 6.3E-05 48.7 11.7 39 59-102 246-284 (797)
333 1j8m_F SRP54, signal recogniti 89.1 0.46 1.6E-05 47.1 5.8 37 83-119 100-139 (297)
334 2jeo_A Uridine-cytidine kinase 88.9 0.22 7.7E-06 47.6 3.3 35 83-117 27-69 (245)
335 2j37_W Signal recognition part 88.8 0.6 2.1E-05 49.9 6.8 52 68-119 81-142 (504)
336 2v6i_A RNA helicase; membrane, 88.7 1.3 4.5E-05 46.1 9.3 32 82-113 3-38 (431)
337 1f2t_A RAD50 ABC-ATPase; DNA d 88.5 0.24 8.2E-06 43.8 3.0 23 83-105 25-47 (149)
338 2ocp_A DGK, deoxyguanosine kin 88.5 0.25 8.5E-06 47.0 3.2 24 83-106 4-27 (241)
339 1kao_A RAP2A; GTP-binding prot 88.3 0.28 9.6E-06 42.6 3.3 22 83-104 5-26 (167)
340 4edh_A DTMP kinase, thymidylat 88.3 0.26 8.8E-06 46.5 3.2 30 83-112 8-40 (213)
341 1z2a_A RAS-related protein RAB 88.2 0.28 9.6E-06 42.8 3.2 22 83-104 7-28 (168)
342 1ek0_A Protein (GTP-binding pr 88.0 0.29 9.9E-06 42.7 3.2 22 83-104 5-26 (170)
343 2ce2_X GTPase HRAS; signaling 87.9 0.26 8.9E-06 42.7 2.8 22 83-104 5-26 (166)
344 1wms_A RAB-9, RAB9, RAS-relate 87.9 0.3 1E-05 43.2 3.3 22 83-104 9-30 (177)
345 2gza_A Type IV secretion syste 87.9 0.27 9.4E-06 50.1 3.4 34 80-113 174-209 (361)
346 2ewv_A Twitching motility prot 87.9 0.23 7.9E-06 51.0 2.8 26 81-106 136-161 (372)
347 2p67_A LAO/AO transport system 87.9 0.63 2.2E-05 46.9 6.0 37 80-116 55-94 (341)
348 2lkc_A Translation initiation 87.8 0.32 1.1E-05 43.0 3.4 24 81-104 8-31 (178)
349 2eyq_A TRCF, transcription-rep 87.8 2 6.9E-05 50.6 11.1 46 54-99 594-642 (1151)
350 2px0_A Flagellar biosynthesis 87.8 0.44 1.5E-05 47.2 4.7 35 83-117 107-145 (296)
351 1u8z_A RAS-related protein RAL 87.8 0.3 1E-05 42.4 3.1 22 83-104 6-27 (168)
352 3tmk_A Thymidylate kinase; pho 87.7 0.29 1E-05 46.3 3.2 32 81-112 5-36 (216)
353 2nzj_A GTP-binding protein REM 87.7 0.3 1E-05 43.0 3.1 22 83-104 6-27 (175)
354 1z0j_A RAB-22, RAS-related pro 87.7 0.3 1E-05 42.6 3.2 23 83-105 8-30 (170)
355 2f9l_A RAB11B, member RAS onco 87.7 0.3 1E-05 44.6 3.2 22 83-104 7-28 (199)
356 3aez_A Pantothenate kinase; tr 87.7 0.44 1.5E-05 47.6 4.7 36 83-118 92-132 (312)
357 1ky3_A GTP-binding protein YPT 87.7 0.31 1.1E-05 43.1 3.3 22 83-104 10-31 (182)
358 1z08_A RAS-related protein RAB 87.7 0.3 1E-05 42.7 3.1 22 83-104 8-29 (170)
359 3tif_A Uncharacterized ABC tra 87.6 0.27 9.1E-06 47.0 2.8 27 80-106 30-56 (235)
360 2jlq_A Serine protease subunit 87.6 0.55 1.9E-05 49.3 5.5 47 82-133 20-70 (451)
361 1yrb_A ATP(GTP)binding protein 87.6 0.49 1.7E-05 45.1 4.8 35 82-116 15-51 (262)
362 1c1y_A RAS-related protein RAP 87.5 0.33 1.1E-05 42.3 3.2 22 83-104 5-26 (167)
363 1sq5_A Pantothenate kinase; P- 87.4 0.67 2.3E-05 46.0 5.8 36 83-118 82-122 (308)
364 1oix_A RAS-related protein RAB 87.4 0.3 1E-05 44.5 3.0 23 83-105 31-53 (191)
365 3b9q_A Chloroplast SRP recepto 87.4 0.51 1.7E-05 46.9 4.9 35 83-117 102-138 (302)
366 2erx_A GTP-binding protein DI- 87.4 0.32 1.1E-05 42.5 3.0 22 83-104 5-26 (172)
367 3cr8_A Sulfate adenylyltranfer 87.3 0.25 8.5E-06 53.5 2.7 46 61-106 349-394 (552)
368 1g16_A RAS-related protein SEC 87.3 0.31 1.1E-05 42.6 2.9 22 83-104 5-26 (170)
369 2wji_A Ferrous iron transport 87.3 0.33 1.1E-05 42.9 3.1 22 83-104 5-26 (165)
370 1r8s_A ADP-ribosylation factor 87.2 0.36 1.2E-05 42.0 3.3 21 84-104 3-23 (164)
371 2axn_A 6-phosphofructo-2-kinas 87.2 0.46 1.6E-05 51.0 4.7 33 83-115 37-72 (520)
372 2whx_A Serine protease/ntpase/ 87.2 0.77 2.6E-05 50.4 6.6 47 81-132 186-236 (618)
373 1r2q_A RAS-related protein RAB 87.2 0.35 1.2E-05 42.2 3.2 22 83-104 8-29 (170)
374 2hxs_A RAB-26, RAS-related pro 87.0 0.37 1.3E-05 42.6 3.3 22 83-104 8-29 (178)
375 3llm_A ATP-dependent RNA helic 87.0 0.54 1.9E-05 44.4 4.7 21 82-102 77-97 (235)
376 1p5z_B DCK, deoxycytidine kina 87.0 0.19 6.7E-06 48.5 1.5 25 82-106 25-49 (263)
377 2cbz_A Multidrug resistance-as 86.8 0.31 1.1E-05 46.6 2.8 26 80-105 30-55 (237)
378 3q85_A GTP-binding protein REM 86.8 0.36 1.2E-05 42.3 3.1 21 83-103 4-24 (169)
379 2wv9_A Flavivirin protease NS2 86.8 1.7 5.8E-05 48.1 9.1 47 81-132 241-291 (673)
380 2xxa_A Signal recognition part 86.7 1.1 3.7E-05 47.0 7.1 53 67-119 79-142 (433)
381 1svi_A GTP-binding protein YSX 86.7 0.31 1.1E-05 44.0 2.7 24 81-104 23-46 (195)
382 3clv_A RAB5 protein, putative; 86.7 0.38 1.3E-05 43.3 3.3 22 83-104 9-30 (208)
383 2zej_A Dardarin, leucine-rich 86.7 0.31 1.1E-05 43.9 2.6 22 83-104 4-25 (184)
384 2y8e_A RAB-protein 6, GH09086P 86.7 0.35 1.2E-05 42.7 2.9 22 83-104 16-37 (179)
385 1sgw_A Putative ABC transporte 86.6 0.36 1.2E-05 45.5 3.1 27 80-106 34-60 (214)
386 1z0f_A RAB14, member RAS oncog 86.6 0.39 1.3E-05 42.4 3.2 23 83-105 17-39 (179)
387 3bc1_A RAS-related protein RAB 86.6 0.39 1.3E-05 42.9 3.2 22 83-104 13-34 (195)
388 2pcj_A ABC transporter, lipopr 86.5 0.29 1E-05 46.3 2.4 27 80-106 29-55 (224)
389 3lv8_A DTMP kinase, thymidylat 86.5 0.36 1.2E-05 46.3 3.0 25 82-106 28-52 (236)
390 1upt_A ARL1, ADP-ribosylation 86.5 0.4 1.4E-05 42.0 3.2 23 82-104 8-30 (171)
391 2qm8_A GTPase/ATPase; G protei 86.4 0.54 1.9E-05 47.5 4.5 27 79-105 53-79 (337)
392 1jwy_B Dynamin A GTPase domain 86.4 0.35 1.2E-05 47.7 3.0 25 80-104 23-47 (315)
393 3lfu_A DNA helicase II; SF1 he 86.3 0.37 1.3E-05 52.7 3.5 22 81-102 22-43 (647)
394 2fn4_A P23, RAS-related protei 86.3 0.38 1.3E-05 42.5 3.0 22 83-104 11-32 (181)
395 2efe_B Small GTP-binding prote 86.3 0.42 1.4E-05 42.4 3.2 22 83-104 14-35 (181)
396 2f1r_A Molybdopterin-guanine d 86.2 0.18 6.3E-06 45.8 0.8 25 82-106 3-27 (171)
397 4tmk_A Protein (thymidylate ki 86.1 0.39 1.3E-05 45.2 3.1 25 82-106 4-28 (213)
398 4dsu_A GTPase KRAS, isoform 2B 86.1 0.43 1.5E-05 42.5 3.3 22 83-104 6-27 (189)
399 2wjg_A FEOB, ferrous iron tran 86.1 0.4 1.4E-05 42.9 3.1 22 83-104 9-30 (188)
400 2oil_A CATX-8, RAS-related pro 86.1 0.42 1.5E-05 43.1 3.2 22 83-104 27-48 (193)
401 2bme_A RAB4A, RAS-related prot 86.1 0.37 1.3E-05 43.0 2.8 22 83-104 12-33 (186)
402 1rj9_A FTSY, signal recognitio 86.1 0.41 1.4E-05 47.7 3.3 23 83-105 104-126 (304)
403 2pt7_A CAG-ALFA; ATPase, prote 86.0 0.58 2E-05 47.1 4.5 34 81-114 171-206 (330)
404 3b85_A Phosphate starvation-in 86.0 0.32 1.1E-05 45.6 2.4 24 81-104 22-45 (208)
405 1b0u_A Histidine permease; ABC 86.0 0.37 1.3E-05 46.9 2.9 35 80-114 31-67 (262)
406 4f4c_A Multidrug resistance pr 86.0 1.3 4.3E-05 53.1 8.0 28 80-107 443-470 (1321)
407 4ag6_A VIRB4 ATPase, type IV s 85.9 0.73 2.5E-05 47.2 5.3 33 81-113 35-70 (392)
408 3pqc_A Probable GTP-binding pr 85.9 0.37 1.3E-05 43.3 2.7 23 82-104 24-46 (195)
409 2onk_A Molybdate/tungstate ABC 85.9 0.41 1.4E-05 45.9 3.1 25 82-106 25-49 (240)
410 3q72_A GTP-binding protein RAD 85.8 0.37 1.3E-05 42.0 2.6 21 83-103 4-24 (166)
411 3ld9_A DTMP kinase, thymidylat 85.8 0.43 1.5E-05 45.4 3.2 25 83-107 23-47 (223)
412 1m7b_A RND3/RHOE small GTP-bin 85.7 0.41 1.4E-05 42.9 2.9 22 83-104 9-30 (184)
413 2a9k_A RAS-related protein RAL 85.7 0.46 1.6E-05 42.2 3.2 22 83-104 20-41 (187)
414 3kkq_A RAS-related protein M-R 85.6 0.45 1.5E-05 42.4 3.1 22 83-104 20-41 (183)
415 2zu0_C Probable ATP-dependent 85.6 0.46 1.6E-05 46.3 3.4 25 80-104 45-69 (267)
416 1zj6_A ADP-ribosylation factor 85.6 0.58 2E-05 42.0 3.9 24 81-104 16-39 (187)
417 3con_A GTPase NRAS; structural 85.5 0.47 1.6E-05 42.6 3.2 22 83-104 23-44 (190)
418 1g6h_A High-affinity branched- 85.5 0.38 1.3E-05 46.6 2.7 27 80-106 32-58 (257)
419 2pze_A Cystic fibrosis transme 85.5 0.39 1.3E-05 45.6 2.8 27 80-106 33-59 (229)
420 2d2e_A SUFC protein; ABC-ATPas 85.5 0.45 1.5E-05 45.9 3.2 25 80-104 28-52 (250)
421 2g6b_A RAS-related protein RAB 85.4 0.48 1.6E-05 41.9 3.2 22 83-104 12-33 (180)
422 2og2_A Putative signal recogni 85.4 0.73 2.5E-05 47.0 4.9 23 83-105 159-181 (359)
423 2bov_A RAla, RAS-related prote 85.4 0.46 1.6E-05 43.2 3.1 22 83-104 16-37 (206)
424 3c5c_A RAS-like protein 12; GD 85.4 0.49 1.7E-05 42.7 3.3 22 83-104 23-44 (187)
425 3qks_A DNA double-strand break 85.3 0.45 1.5E-05 44.2 3.0 23 83-105 25-47 (203)
426 1vg8_A RAS-related protein RAB 85.3 0.47 1.6E-05 43.2 3.2 23 83-105 10-32 (207)
427 2olj_A Amino acid ABC transpor 85.3 0.42 1.4E-05 46.6 2.9 27 80-106 49-75 (263)
428 1mh1_A RAC1; GTP-binding, GTPa 85.2 0.5 1.7E-05 42.0 3.2 22 83-104 7-28 (186)
429 3ihw_A Centg3; RAS, centaurin, 85.2 0.5 1.7E-05 42.7 3.2 21 84-104 23-43 (184)
430 3hjn_A DTMP kinase, thymidylat 85.2 1.4 4.8E-05 40.7 6.4 30 84-113 3-35 (197)
431 2ghi_A Transport protein; mult 85.2 0.42 1.4E-05 46.4 2.8 27 80-106 45-71 (260)
432 3tw8_B RAS-related protein RAB 85.1 0.46 1.6E-05 41.9 2.9 23 82-104 10-32 (181)
433 3fvq_A Fe(3+) IONS import ATP- 85.1 0.44 1.5E-05 48.6 3.1 27 80-106 29-55 (359)
434 3sop_A Neuronal-specific septi 85.1 0.39 1.3E-05 47.0 2.6 24 83-106 4-27 (270)
435 2yv5_A YJEQ protein; hydrolase 85.0 0.65 2.2E-05 46.1 4.2 23 83-106 167-189 (302)
436 1mv5_A LMRA, multidrug resista 85.0 0.37 1.3E-05 46.2 2.4 27 80-106 27-53 (243)
437 3bwd_D RAC-like GTP-binding pr 85.0 0.51 1.8E-05 41.8 3.2 22 83-104 10-31 (182)
438 1ji0_A ABC transporter; ATP bi 85.0 0.41 1.4E-05 45.8 2.7 27 80-106 31-57 (240)
439 2gf9_A RAS-related protein RAB 85.0 0.51 1.7E-05 42.5 3.2 22 83-104 24-45 (189)
440 1zd9_A ADP-ribosylation factor 85.0 0.51 1.8E-05 42.5 3.2 22 83-104 24-45 (188)
441 2cxx_A Probable GTP-binding pr 85.0 0.42 1.4E-05 42.8 2.6 22 83-104 3-24 (190)
442 2ff7_A Alpha-hemolysin translo 85.0 0.42 1.4E-05 46.1 2.7 27 80-106 34-60 (247)
443 4hlc_A DTMP kinase, thymidylat 85.0 1.3 4.4E-05 41.3 6.0 30 83-112 4-35 (205)
444 1h65_A Chloroplast outer envel 85.0 0.63 2.2E-05 45.0 4.1 40 65-104 23-62 (270)
445 3tkl_A RAS-related protein RAB 84.9 0.52 1.8E-05 42.4 3.2 22 83-104 18-39 (196)
446 2ixe_A Antigen peptide transpo 84.9 0.43 1.5E-05 46.6 2.8 27 80-106 44-70 (271)
447 1z06_A RAS-related protein RAB 84.9 0.53 1.8E-05 42.4 3.3 22 83-104 22-43 (189)
448 1vpl_A ABC transporter, ATP-bi 84.9 0.45 1.5E-05 46.1 2.9 27 80-106 40-66 (256)
449 3dz8_A RAS-related protein RAB 84.8 0.49 1.7E-05 42.7 3.0 23 83-105 25-47 (191)
450 2it1_A 362AA long hypothetical 84.7 0.53 1.8E-05 48.1 3.4 27 80-106 28-54 (362)
451 1zbd_A Rabphilin-3A; G protein 84.6 0.5 1.7E-05 43.0 3.0 22 83-104 10-31 (203)
452 2yz2_A Putative ABC transporte 84.6 0.46 1.6E-05 46.3 2.8 27 80-106 32-58 (266)
453 2qi9_C Vitamin B12 import ATP- 84.6 0.45 1.5E-05 45.9 2.8 28 80-107 25-52 (249)
454 1x3s_A RAS-related protein RAB 84.6 0.55 1.9E-05 42.1 3.2 22 83-104 17-38 (195)
455 2gks_A Bifunctional SAT/APS ki 84.5 0.67 2.3E-05 50.1 4.4 55 60-114 351-408 (546)
456 2yyz_A Sugar ABC transporter, 84.5 0.53 1.8E-05 48.1 3.4 27 80-106 28-54 (359)
457 2a5j_A RAS-related protein RAB 84.5 0.56 1.9E-05 42.3 3.2 22 83-104 23-44 (191)
458 2atv_A RERG, RAS-like estrogen 84.4 0.57 1.9E-05 42.5 3.3 22 83-104 30-51 (196)
459 2gj8_A MNME, tRNA modification 84.4 0.48 1.6E-05 42.3 2.7 22 83-104 6-27 (172)
460 1tq4_A IIGP1, interferon-induc 84.4 0.48 1.6E-05 49.3 3.0 25 81-105 69-93 (413)
461 1z47_A CYSA, putative ABC-tran 84.3 0.52 1.8E-05 48.0 3.2 27 80-106 40-66 (355)
462 2iwr_A Centaurin gamma 1; ANK 84.3 0.43 1.5E-05 42.3 2.3 22 83-104 9-30 (178)
463 2fg5_A RAB-22B, RAS-related pr 84.3 0.53 1.8E-05 42.6 3.0 22 83-104 25-46 (192)
464 3gfo_A Cobalt import ATP-bindi 84.2 0.46 1.6E-05 46.6 2.7 27 80-106 33-59 (275)
465 1v43_A Sugar-binding transport 84.2 0.56 1.9E-05 48.1 3.4 27 80-106 36-62 (372)
466 2p5s_A RAS and EF-hand domain 84.2 0.58 2E-05 42.6 3.2 23 82-104 29-51 (199)
467 3t5g_A GTP-binding protein RHE 84.2 0.51 1.7E-05 41.9 2.8 22 83-104 8-29 (181)
468 1m2o_B GTP-binding protein SAR 84.1 0.53 1.8E-05 42.7 2.9 23 82-104 24-46 (190)
469 3t1o_A Gliding protein MGLA; G 84.1 0.59 2E-05 41.9 3.2 23 83-105 16-38 (198)
470 3rlf_A Maltose/maltodextrin im 84.1 0.58 2E-05 48.2 3.4 27 80-106 28-54 (381)
471 3reg_A RHO-like small GTPase; 84.0 0.6 2E-05 42.2 3.2 22 83-104 25-46 (194)
472 4i1u_A Dephospho-COA kinase; s 84.0 0.71 2.4E-05 43.4 3.8 51 81-134 9-64 (210)
473 1ksh_A ARF-like protein 2; sma 83.9 0.48 1.6E-05 42.4 2.5 23 82-104 19-41 (186)
474 2nq2_C Hypothetical ABC transp 83.9 0.49 1.7E-05 45.7 2.7 27 80-106 30-56 (253)
475 2ihy_A ABC transporter, ATP-bi 83.9 0.5 1.7E-05 46.4 2.8 27 80-106 46-72 (279)
476 2bcg_Y Protein YP2, GTP-bindin 83.8 0.55 1.9E-05 42.9 2.9 22 83-104 10-31 (206)
477 1g29_1 MALK, maltose transport 83.7 0.57 1.9E-05 48.1 3.2 27 80-106 28-54 (372)
478 2yhs_A FTSY, cell division pro 83.7 1 3.5E-05 47.9 5.2 32 83-114 295-328 (503)
479 3cph_A RAS-related protein SEC 83.7 0.62 2.1E-05 42.6 3.2 22 83-104 22-43 (213)
480 4g1u_C Hemin import ATP-bindin 83.7 0.51 1.7E-05 46.0 2.7 35 80-114 36-72 (266)
481 3def_A T7I23.11 protein; chlor 83.6 0.8 2.7E-05 44.1 4.1 23 82-104 37-59 (262)
482 1tf7_A KAIC; homohexamer, hexa 83.6 0.5 1.7E-05 50.7 2.9 45 72-116 272-319 (525)
483 4f92_B U5 small nuclear ribonu 83.6 3 0.0001 51.2 9.8 45 65-113 930-979 (1724)
484 2fh5_B SR-beta, signal recogni 83.5 0.64 2.2E-05 42.7 3.2 24 82-105 8-31 (214)
485 2gf0_A GTP-binding protein DI- 83.4 0.61 2.1E-05 42.0 3.0 22 83-104 10-31 (199)
486 2h17_A ADP-ribosylation factor 83.2 0.49 1.7E-05 42.3 2.3 22 83-104 23-44 (181)
487 1bif_A 6-phosphofructo-2-kinas 83.1 0.6 2.1E-05 49.3 3.2 31 83-113 41-74 (469)
488 3oes_A GTPase rhebl1; small GT 83.1 0.62 2.1E-05 42.5 2.9 22 83-104 26-47 (201)
489 2o52_A RAS-related protein RAB 83.1 0.59 2E-05 42.7 2.8 22 83-104 27-48 (200)
490 1lw7_A Transcriptional regulat 83.0 0.58 2E-05 47.6 2.9 25 83-107 172-196 (365)
491 2ew1_A RAS-related protein RAB 82.9 0.63 2.2E-05 42.8 2.9 22 83-104 28-49 (201)
492 2www_A Methylmalonic aciduria 82.9 0.6 2.1E-05 47.3 3.0 25 81-105 74-98 (349)
493 1gwn_A RHO-related GTP-binding 82.9 0.64 2.2E-05 42.9 2.9 22 83-104 30-51 (205)
494 2fu5_C RAS-related protein RAB 82.9 0.41 1.4E-05 42.6 1.6 22 83-104 10-31 (183)
495 2q3h_A RAS homolog gene family 82.8 0.68 2.3E-05 42.0 3.1 22 83-104 22-43 (201)
496 3d31_A Sulfate/molybdate ABC t 82.7 0.48 1.6E-05 48.2 2.2 27 80-106 25-51 (348)
497 3lxx_A GTPase IMAP family memb 82.7 0.68 2.3E-05 43.7 3.1 24 82-105 30-53 (239)
498 1u0l_A Probable GTPase ENGC; p 82.6 0.91 3.1E-05 44.9 4.1 24 83-106 171-194 (301)
499 1fzq_A ADP-ribosylation factor 82.6 0.61 2.1E-05 41.9 2.6 22 83-104 18-39 (181)
500 3tqf_A HPR(Ser) kinase; transf 82.6 0.69 2.3E-05 42.3 2.9 23 82-104 17-39 (181)
No 1
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.9e-23 Score=209.72 Aligned_cols=176 Identities=9% Similarity=0.093 Sum_probs=129.5
Q ss_pred hcCCChHHHHHHHHHHHhcc--CCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTL--NSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~--~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~~~s~r~l~~ 125 (535)
+.+||||+|+.+|..+|.+. ...++++|||||||||||++++.+++++ .+.++||||..+.++..+|.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 34999999999999999885 3456789999999999999999999998 35689999999999999999
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
.|+++|.+.... ..+.. ..|+..++. +. ...+.++||+|||+|+|. +
T Consensus 100 ~I~~~L~g~~~~---------~~~~~----~~L~~~f~~----~~-------------~~~~~~~ii~lDE~d~l~--~- 146 (318)
T 3te6_A 100 KIWFAISKENLC---------GDISL----EALNFYITN----VP-------------KAKKRKTLILIQNPENLL--S- 146 (318)
T ss_dssp HHHHHHSCCC-----------CCCCH----HHHHHHHHH----SC-------------GGGSCEEEEEEECCSSSC--C-
T ss_pred HHHHHhcCCCCC---------chHHH----HHHHHHHHH----hh-------------hccCCceEEEEecHHHhh--c-
Confidence 999999764211 11121 123333322 10 013468999999999997 3
Q ss_pred CCChHHHHHccccccCCCcEEEEEEeCCC--cccccc-CCC-CCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 206 SSSILPFLFGLSDILKMPEVGMIFISSTS--PDTYHS-NTG-YVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~~~~~l~vI~Is~~~--~~~f~~-~~g-~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+++|+.|++|.+.. ..++++|+|+|+. ++..+. +.. .+.+..|+|+||+.+|+.+||..+.
T Consensus 147 -q~~L~~l~~~~~~~-~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 147 -EKILQYFEKWISSK-NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp -THHHHHHHHHHHCS-SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred -chHHHHHHhccccc-CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 78999999987653 3579999999886 333332 111 1123589999999999999998764
No 2
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.76 E-value=3.6e-18 Score=177.16 Aligned_cols=230 Identities=15% Similarity=0.173 Sum_probs=148.6
Q ss_pred CCccccCCCC-CHHHHhhcCCChHHHHHHHHHHHhcc--CCCCCCeEEECCCCCCHHHHHHHHHHhc---------CCCe
Q 009415 42 GDLVFGQEPI-SLDDLLSRFPGRRVQILELLRLLGTL--NSSMPPLFVYGSASTGKTSIIIQVFRHL---------SRPF 109 (535)
Q Consensus 42 ~~~~f~~~~~-~~~~l~~~~p~Re~qi~~L~~ll~~~--~~~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~ 109 (535)
++.+|..... .....++.++||+.++.+|...+... ...+.+++|+||+|||||++++.+++.+ +..+
T Consensus 2 ~~~~f~~~~~l~~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T 2v1u_A 2 ESKIFRKRWVLLPDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKP 81 (387)
T ss_dssp CCSSBSCHHHHSTTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CcchhhCHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 3456654322 23446689999999999999998664 2345689999999999999999999988 7889
Q ss_pred EEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcE
Q 009415 110 VYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKM 189 (535)
Q Consensus 110 ~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~ 189 (535)
+++||..+.+...++..++.++.... +..+.+..++...+. +.++ ..+++
T Consensus 82 ~~i~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~~~~~~~~l~-------~~l~--------------~~~~~ 131 (387)
T 2v1u_A 82 IYVNARHRETPYRVASAIAEAVGVRV---------PFTGLSVGEVYERLV-------KRLS--------------RLRGI 131 (387)
T ss_dssp EEEETTTSCSHHHHHHHHHHHHSCCC---------CSSCCCHHHHHHHHH-------HHHT--------------TSCSE
T ss_pred EEEECCcCCCHHHHHHHHHHHhCCCC---------CCCCCCHHHHHHHHH-------HHHh--------------ccCCe
Confidence 99999999999999999999995321 112223433222221 2111 13468
Q ss_pred EEEEEeCCcccccccCCCChHHHHHccccccC-CCcEEEEEEeCCCc--cc----cccCCCCCCCeeEecCCCCHHHHHH
Q 009415 190 IYLIFDNFELVREWDKSSSILPFLFGLSDILK-MPEVGMIFISSTSP--DT----YHSNTGYVAPIHVYFPECTEDDLRQ 262 (535)
Q Consensus 190 ~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~-~~~l~vI~Is~~~~--~~----f~~~~g~~~p~~I~FppYt~~el~~ 262 (535)
.+|||||+|.+.......++|..|+++.+... ..++++|++++..+ +. +.++.+ +..|+|+||+.+|+.+
T Consensus 132 ~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~---~~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 132 YIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG---EVELVFPPYTAPQLRD 208 (387)
T ss_dssp EEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT---SEECCBCCCCHHHHHH
T ss_pred EEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC---CeEEeeCCCCHHHHHH
Confidence 99999999999642002577888877765432 24688999988762 22 223332 2489999999999999
Q ss_pred HHhhcCC----ChhhhhHHHHhhhhccccccccHHHHHHHHHHhhh
Q 009415 263 IFMRNQA----NQKLYSSFLDIVLRPFCRITKRVDELSTAFSLLFK 304 (535)
Q Consensus 263 IL~~~~~----~~~l~~~f~~~vl~~~~~~~rdl~eL~~~~~~L~~ 304 (535)
||..... ...+-+..+..+.........++..+..++...+.
T Consensus 209 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 209 ILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp HHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9986421 11122222222222222222566666666666543
No 3
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=1.3e-16 Score=165.81 Aligned_cols=225 Identities=13% Similarity=0.161 Sum_probs=145.9
Q ss_pred CccccCCCC-CHHHHhhcCCChHHHHHHHHHHHhcc--CCCCCCeEEECCCCCCHHHHHHHHHHhc-----------CCC
Q 009415 43 DLVFGQEPI-SLDDLLSRFPGRRVQILELLRLLGTL--NSSMPPLFVYGSASTGKTSIIIQVFRHL-----------SRP 108 (535)
Q Consensus 43 ~~~f~~~~~-~~~~l~~~~p~Re~qi~~L~~ll~~~--~~~~~~l~I~G~~GTGKTs~v~~vl~~l-----------~~~ 108 (535)
+.+|..... .....++.++||++++.+|...+... ...+.+++|+||+|||||++++.+++.+ +..
T Consensus 4 ~~i~~~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 83 (384)
T 2qby_B 4 EVIKNPKVFIDPLSVFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVK 83 (384)
T ss_dssp ---CCTTTTTCHHHHCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCE
T ss_pred ccccccHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCce
Confidence 345665433 35667899999999999999888763 2334579999999999999999999987 889
Q ss_pred eEEEeccccC-CHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCC
Q 009415 109 FVYTSCLSCY-SPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNG 187 (535)
Q Consensus 109 ~~yVnc~~~~-s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~ 187 (535)
++++||..+. ++..++..++.++.+... +.......+....+. +.++ ..
T Consensus 84 ~~~i~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~~~~~l~-------~~l~---------------~~ 133 (384)
T 2qby_B 84 QAYVNCREVGGTPQAVLSSLAGKLTGFSV--------PKHGINLGEYIDKIK-------NGTR---------------NI 133 (384)
T ss_dssp EEEEEHHHHCSCHHHHHHHHHHHHHCSCC--------CSSSSCTHHHHHHHH-------HHHS---------------SS
T ss_pred EEEEECccCCCCHHHHHHHHHHHhcCCCC--------CCCCCCHHHHHHHHH-------HHhc---------------cC
Confidence 9999999998 999999999999965421 112223333222221 2111 22
Q ss_pred cEEEEEEeCCcccccccCCCCh-HHHHHccccccCCCcEEEEEEeCCCc--cccccCCCCCCCeeEecCCCCHHHHHHHH
Q 009415 188 KMIYLIFDNFELVREWDKSSSI-LPFLFGLSDILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~l-L~~L~rL~E~~~~~~l~vI~Is~~~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL 264 (535)
+. +|||||+|.+.... ..++ ++.|+++. .++.+|++++..+ +.+......+-...|+|+||+.+|+.+||
T Consensus 134 ~~-vlilDEi~~l~~~~-~~~~~l~~l~~~~-----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il 206 (384)
T 2qby_B 134 RA-IIYLDEVDTLVKRR-GGDIVLYQLLRSD-----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFIL 206 (384)
T ss_dssp CE-EEEEETTHHHHHST-TSHHHHHHHHTSS-----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHH
T ss_pred CC-EEEEECHHHhccCC-CCceeHHHHhcCC-----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHH
Confidence 33 99999999996421 2566 88887765 4799999998763 22221111111138999999999999999
Q ss_pred hhcCC----ChhhhhHHHHhhhhccccccccHHHHHHHHHHhhh
Q 009415 265 MRNQA----NQKLYSSFLDIVLRPFCRITKRVDELSTAFSLLFK 304 (535)
Q Consensus 265 ~~~~~----~~~l~~~f~~~vl~~~~~~~rdl~eL~~~~~~L~~ 304 (535)
..... ...+-+..+..+.........|+..+..++...+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 207 SKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp HHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 86421 11222233333333322233566666666665544
No 4
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.68 E-value=4e-16 Score=162.08 Aligned_cols=175 Identities=19% Similarity=0.316 Sum_probs=125.3
Q ss_pred HHhhcCCChHHHHHHHHHHHhcc--CCC--CCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHH
Q 009415 55 DLLSRFPGRRVQILELLRLLGTL--NSS--MPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~--~~~--~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~ 126 (535)
..++.++||+.++.+|...+... ... .++++|+||+|||||++++.+++.+ +..++++||..+.+...++..
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 34578999999999999998763 122 2379999999999999999999988 567899999999999999999
Q ss_pred HHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCC
Q 009415 127 ILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS 206 (535)
Q Consensus 127 Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~ 206 (535)
++..+.... +.......++...+...+. ..+.+.||||||+|.+.
T Consensus 94 l~~~l~~~~---------~~~~~~~~~~~~~l~~~l~---------------------~~~~~~vlilDE~~~l~----- 138 (389)
T 1fnn_A 94 IARSLNIPF---------PRRGLSRDEFLALLVEHLR---------------------ERDLYMFLVLDDAFNLA----- 138 (389)
T ss_dssp HHHHTTCCC---------CSSCCCHHHHHHHHHHHHH---------------------HTTCCEEEEEETGGGSC-----
T ss_pred HHHHhCccC---------CCCCCCHHHHHHHHHHHHh---------------------hcCCeEEEEEECccccc-----
Confidence 988874321 1112233343333322221 12357899999999992
Q ss_pred CChHHHHHccccccCC---CcEEEEEEeCCCc--ccc----ccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 207 SSILPFLFGLSDILKM---PEVGMIFISSTSP--DTY----HSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 207 ~~lL~~L~rL~E~~~~---~~l~vI~Is~~~~--~~f----~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
...+..|+++.+.... .++.+|++++.+. +.+ .++.. +..|+|+||+.+|+.+||...
T Consensus 139 ~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~---~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 139 PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG---KYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHT---TCEEECCCCBHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCC---CceEEeCCCCHHHHHHHHHHH
Confidence 4678888877654322 3789999998762 122 12222 247999999999999999764
No 5
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=4e-16 Score=161.40 Aligned_cols=180 Identities=19% Similarity=0.303 Sum_probs=126.5
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcc--CCCCCCeEEECCCCCCHHHHHHHHHHhc------CCCeEEEeccccCCHHHHHH
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTL--NSSMPPLFVYGSASTGKTSIIIQVFRHL------SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~--~~~~~~l~I~G~~GTGKTs~v~~vl~~l------~~~~~yVnc~~~~s~r~l~~ 125 (535)
+..++.|+||+.++..|...+... ...+.+++|+||+|||||++++.+++.+ +..++|++|..+.+...++.
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 345678999999999999988764 2345679999999999999999999988 78899999999888888888
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
.++.++.... +....+..+....+...+ . ..+.+.+|||||+|.+.+. .
T Consensus 96 ~i~~~l~~~~---------~~~~~~~~~~~~~l~~~l----~-----------------~~~~~~vlilDE~~~l~~~-~ 144 (386)
T 2qby_A 96 DLLESLDVKV---------PFTGLSIAELYRRLVKAV----R-----------------DYGSQVVIVLDEIDAFVKK-Y 144 (386)
T ss_dssp HHTTTTSCCC---------CSSSCCHHHHHHHHHHHH----H-----------------TCCSCEEEEEETHHHHHHS-S
T ss_pred HHHHHhCCCC---------CCCCCCHHHHHHHHHHHH----h-----------------ccCCeEEEEEcChhhhhcc-C
Confidence 8877763211 112223333222222221 1 1335789999999999752 1
Q ss_pred CCChHHHHHccccccCCCcEEEEEEeCCCc--cc----cccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 SSSILPFLFGLSDILKMPEVGMIFISSTSP--DT----YHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~--~~----f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
..+++..|+++.+.....++++|++++..+ .. +.++.. ...|+|+||+.+|+.+||...
T Consensus 145 ~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~---~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 145 NDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLS---EEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp CSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTT---TEEEEECCCCHHHHHHHHHHH
T ss_pred cCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCC---CeeEEeCCCCHHHHHHHHHHH
Confidence 267888888776432234789999998752 22 222322 248999999999999999863
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=5.9e-15 Score=154.61 Aligned_cols=180 Identities=16% Similarity=0.213 Sum_probs=125.2
Q ss_pred HHHhhcCCChHHHHHHHHHHH-hccC----CCCCCeEE--ECCCCCCHHHHHHHHHHhc---------CCCeEEEecccc
Q 009415 54 DDLLSRFPGRRVQILELLRLL-GTLN----SSMPPLFV--YGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSC 117 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll-~~~~----~~~~~l~I--~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~ 117 (535)
..++..|+||+.|+.+|...+ .... ..+.+++| +|++|+|||++++.+++.+ +..++|++|...
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 446689999999999999998 5421 13456899 9999999999999999876 457899999988
Q ss_pred CCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCC
Q 009415 118 YSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNF 197 (535)
Q Consensus 118 ~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~ 197 (535)
.+...++..++.++....+ ....+..++...+...+.. .+++++|||||+
T Consensus 98 ~~~~~~~~~l~~~l~~~~~---------~~~~~~~~~~~~l~~~l~~---------------------~~~~~llvlDe~ 147 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQ---------VRGAPALDILKALVDNLYV---------------------ENHYLLVILDEF 147 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCC---------CTTCCHHHHHHHHHHHHHH---------------------HTCEEEEEEEST
T ss_pred CCHHHHHHHHHHHhCCCCC---------CCCCCHHHHHHHHHHHHHh---------------------cCCeEEEEEeCH
Confidence 8999999999999853211 1122333433333333321 236899999999
Q ss_pred ccccccc-CCCChHHHHHccccccC--C--CcEEEEEEeCCCc---------cccccCCCCCCCeeEecCCCCHHHHHHH
Q 009415 198 ELVREWD-KSSSILPFLFGLSDILK--M--PEVGMIFISSTSP---------DTYHSNTGYVAPIHVYFPECTEDDLRQI 263 (535)
Q Consensus 198 d~L~~~d-~~~~lL~~L~rL~E~~~--~--~~l~vI~Is~~~~---------~~f~~~~g~~~p~~I~FppYt~~el~~I 263 (535)
|.+.... ...+.+..|+++.+... . .++.+|++++.+. ....++.+ ..+.|+||+.+|+.+|
T Consensus 148 ~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~----~~i~l~~l~~~e~~~l 223 (412)
T 1w5s_A 148 QSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG----FKLHLPAYKSRELYTI 223 (412)
T ss_dssp HHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS----EEEECCCCCHHHHHHH
T ss_pred HHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcC----CeeeeCCCCHHHHHHH
Confidence 9996410 02467887777654332 2 4688998887542 12222222 3499999999999999
Q ss_pred Hhhc
Q 009415 264 FMRN 267 (535)
Q Consensus 264 L~~~ 267 (535)
|..+
T Consensus 224 l~~~ 227 (412)
T 1w5s_A 224 LEQR 227 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9743
No 7
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.41 E-value=6.4e-13 Score=122.89 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=99.5
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.||++++.++...+.. ....+++|+|++|||||++++.+++.+ +.++++++|......
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 92 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG------- 92 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT-------
T ss_pred cccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc-------
Confidence 4689999999999998876 234579999999999999999999986 567788887432110
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--- 204 (535)
.....++...+...+..+.. .+.+.||+|||+|.+....
T Consensus 93 --------------------~~~~~~~~~~~~~~~~~~~~------------------~~~~~vl~iDe~~~l~~~~~~~ 134 (195)
T 1jbk_A 93 --------------------AKYRGEFEERLKGVLNDLAK------------------QEGNVILFIDELHTMVGAGKAD 134 (195)
T ss_dssp --------------------TCSHHHHHHHHHHHHHHHHH------------------STTTEEEEEETGGGGTT-----
T ss_pred --------------------CCccccHHHHHHHHHHHHhh------------------cCCCeEEEEeCHHHHhccCccc
Confidence 00112222233333332211 2346789999999995210
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCCc--------cccccCCCCCCCeeEecCCCCHHHHHHHH
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSP--------DTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~--------~~f~~~~g~~~p~~I~FppYt~~el~~IL 264 (535)
....+...|..+.+. .++.+|++++... +.+.++. ..|+|++++.+|..+||
T Consensus 135 ~~~~~~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~r~-----~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 135 GAMDAGNMLKPALAR---GELHCVGATTLDEYRQYIEKDAALERRF-----QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -CCCCHHHHHHHHHT---TSCCEEEEECHHHHHHHTTTCHHHHTTE-----EEEECCCCCHHHHHTTC
T ss_pred chHHHHHHHHHhhcc---CCeEEEEeCCHHHHHHHHhcCHHHHHHh-----ceeecCCCCHHHHHHHh
Confidence 114455555554443 4678888887642 3344433 37999999999999886
No 8
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.37 E-value=7.1e-12 Score=118.59 Aligned_cols=180 Identities=12% Similarity=0.140 Sum_probs=112.0
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
.+.||+.++..|...+... ..++++|+||+|||||++++.+.+.+ ...++.++|....+...+.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 87 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH-------- 87 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH--------
T ss_pred HHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHH--------
Confidence 6889999999999998763 34569999999999999999999876 35677888765443322111
Q ss_pred ccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
.+..+.... ....+.+.+|||||+|.+.. .....|
T Consensus 88 ---------------------------~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~-----~~~~~l 122 (226)
T 2chg_A 88 ---------------------------KIKEFARTA-------------PIGGAPFKIIFLDEADALTA-----DAQAAL 122 (226)
T ss_dssp ---------------------------HHHHHHTSC-------------CSTTCSCEEEEEETGGGSCH-----HHHHHH
T ss_pred ---------------------------HHHHHhccc-------------CCCccCceEEEEeChhhcCH-----HHHHHH
Confidence 111111100 00123568999999999853 334555
Q ss_pred HccccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCCh--hhhhHHHHhhhhcccc-
Q 009415 214 FGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQ--KLYSSFLDIVLRPFCR- 287 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~--~l~~~f~~~vl~~~~~- 287 (535)
.++.+... .++.+|++++... +.+.++. ..+.|++++.+|+.++|....... .+-+..+. .+..
T Consensus 123 ~~~l~~~~-~~~~~i~~~~~~~~~~~~l~~r~-----~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~l~~~ 192 (226)
T 2chg_A 123 RRTMEMYS-KSCRFILSCNYVSRIIEPIQSRC-----AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLE----ALIYI 192 (226)
T ss_dssp HHHHHHTT-TTEEEEEEESCGGGSCHHHHTTS-----EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHH----HHHHH
T ss_pred HHHHHhcC-CCCeEEEEeCChhhcCHHHHHhC-----ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH----HHHHH
Confidence 55544432 4678888887642 2233333 489999999999999998543111 11112222 2222
Q ss_pred ccccHHHHHHHHHHhh
Q 009415 288 ITKRVDELSTAFSLLF 303 (535)
Q Consensus 288 ~~rdl~eL~~~~~~L~ 303 (535)
...++..+...+..++
T Consensus 193 ~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 193 SGGDFRKAINALQGAA 208 (226)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 2346666666666554
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.33 E-value=1.5e-11 Score=125.37 Aligned_cols=180 Identities=14% Similarity=0.138 Sum_probs=114.6
Q ss_pred hhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC------CHHHHHHHHHHH
Q 009415 57 LSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY------SPRILFESILNQ 130 (535)
Q Consensus 57 ~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~------s~r~l~~~Il~~ 130 (535)
+..|.||+.++..|...+.. .+.++|+|++|+|||++++.+++..+ ++|++|..+. +...+++.+...
T Consensus 11 ~~~~~gR~~el~~L~~~l~~----~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN----YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQST 84 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhc----CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHH
Confidence 45899999999999999876 26799999999999999999999885 8999998764 677777777765
Q ss_pred Hhhc------cc--cccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 131 LLLH------KK--NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 131 L~~~------~~--~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
+... .. ....|.........+.++...+.... . .. .+++|||||+|.+.+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~-----------------~~-~~~vlvlDe~~~~~~ 142 (350)
T 2qen_A 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLG----E-----------------EL-GEFIVAFDEAQYLRF 142 (350)
T ss_dssp SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHH----H-----------------HH-SCEEEEEETGGGGGG
T ss_pred HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHH----h-----------------cc-CCEEEEEeCHHHHhc
Confidence 5321 00 00001000001223333333322211 1 01 278999999999964
Q ss_pred cc--CCCChHHHHHccccccCCCcEEEEEEeCCCc--ccc---ccC---CCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 203 WD--KSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTY---HSN---TGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 203 ~d--~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~--~~f---~~~---~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
++ ...+++..|-++.+.. +++.+|++++... ..+ ... ........+.++|++.+|+.+++..
T Consensus 143 ~~~~~~~~~~~~L~~~~~~~--~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 143 YGSRGGKELLALFAYAYDSL--PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp BTTTTTHHHHHHHHHHHHHC--TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHH
T ss_pred cCccchhhHHHHHHHHHHhc--CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHH
Confidence 21 1135566665555542 4789999886531 222 110 1011124899999999999999875
No 10
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.31 E-value=1.8e-11 Score=122.97 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcc------------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009415 53 LDDLLSRFPGRRVQILELLRLLGTL------------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (535)
Q Consensus 53 ~~~l~~~~p~Re~qi~~L~~ll~~~------------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s 119 (535)
.+.+.+.+.|++..+..|...+... ...+.+++|+||||||||++++.+.+.++.++++++|..+.+
T Consensus 10 ~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 10 VSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp HHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred HHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 3456678999999999998887541 123567999999999999999999999999999999987653
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=1.2e-11 Score=123.38 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=98.6
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|.+.++.+|...+... ...+.+++|+||||||||++++++.+.++.++++++|.+..+.
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~------- 90 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK------- 90 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC-------
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh-------
Confidence 6788999999998877442 1234569999999999999999999999999999998665321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--- 204 (535)
...+....+...+... + ...+.||+|||+|.+....
T Consensus 91 ----------------------~~~~~~~~~~~~~~~~----~---------------~~~~~vl~iDEid~l~~~~~~~ 129 (285)
T 3h4m_A 91 ----------------------FIGEGASLVKDIFKLA----K---------------EKAPSIIFIDEIDAIAAKRTDA 129 (285)
T ss_dssp ----------------------STTHHHHHHHHHHHHH----H---------------HTCSEEEEEETTHHHHBCCSSS
T ss_pred ----------------------ccchHHHHHHHHHHHH----H---------------HcCCeEEEEECHHHhcccCccc
Confidence 0111111222233221 1 1245789999999984210
Q ss_pred ---CCC---ChHHHHHcc-ccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 ---KSS---SILPFLFGL-SDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 ---~~~---~lL~~L~rL-~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
... ..+..++.. .......++.+|+.+|.+ .+.++. .+- -...++|++++.++..+||...
T Consensus 130 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~-~~R-f~~~i~~~~p~~~~r~~il~~~ 200 (285)
T 3h4m_A 130 LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILR-PGR-FDRIIEVPAPDEKGRLEILKIH 200 (285)
T ss_dssp CCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHS-TTS-EEEEEECCCCCHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcC-CCc-CCeEEEECCCCHHHHHHHHHHH
Confidence 011 223333322 111222457777777764 222332 111 1148999999999999999754
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=4.4e-11 Score=122.00 Aligned_cols=178 Identities=19% Similarity=0.176 Sum_probs=114.8
Q ss_pred HhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc-----CCHHHHHHHHHHH
Q 009415 56 LLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC-----YSPRILFESILNQ 130 (535)
Q Consensus 56 l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~-----~s~r~l~~~Il~~ 130 (535)
.+..|.||++|+..|.. +.. +.++|+|++|+|||++++.+++.++..++|++|... .+...++..+.+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHH
Confidence 45689999999999998 764 589999999999999999999998878899999864 4667788777776
Q ss_pred Hhhccc---------cccCCCCCCc----------CCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEE
Q 009415 131 LLLHKK---------NAFNGYSSAK----------RCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIY 191 (535)
Q Consensus 131 L~~~~~---------~~~~g~~~~~----------r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~v 191 (535)
+..... ....|...+. ....+.+ +++.+.+ ... ++++
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~l~~----------------~~~-~~~v 140 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN-------LLESFEQ----------------ASK-DNVI 140 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHH-------HHHHHHH----------------TCS-SCEE
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHH-------HHHHHHh----------------cCC-CCeE
Confidence 642100 0000100000 0112222 2222111 011 3789
Q ss_pred EEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCc--ccc---cc---CCCCCCCeeEecCCCCHHHHHHH
Q 009415 192 LIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP--DTY---HS---NTGYVAPIHVYFPECTEDDLRQI 263 (535)
Q Consensus 192 lVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~--~~f---~~---~~g~~~p~~I~FppYt~~el~~I 263 (535)
|||||+|.+.+. ...+++..|.++.+.. +++.+|++++... ..+ .. .........|.++|++.+|+.++
T Consensus 141 lvlDe~~~~~~~-~~~~~~~~l~~~~~~~--~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 141 IVLDEAQELVKL-RGVNLLPALAYAYDNL--KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp EEEETGGGGGGC-TTCCCHHHHHHHHHHC--TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred EEEECHHHhhcc-CchhHHHHHHHHHHcC--CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 999999999642 1256777776665542 4789999887642 222 11 01011125899999999999999
Q ss_pred Hhh
Q 009415 264 FMR 266 (535)
Q Consensus 264 L~~ 266 (535)
+..
T Consensus 218 l~~ 220 (357)
T 2fna_A 218 LRR 220 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 13
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.29 E-value=9.6e-12 Score=125.35 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=102.7
Q ss_pred HHhhcCCChHHHHHHHHHHHhcc-------------CCCCCCeEEECCCCCCHHHHHHHHHHhcC-------CCeEEEec
Q 009415 55 DLLSRFPGRRVQILELLRLLGTL-------------NSSMPPLFVYGSASTGKTSIIIQVFRHLS-------RPFVYTSC 114 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~-------------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~-------~~~~yVnc 114 (535)
.+.+.+.|.+.....|..++... ..+..+++|+||||||||++++.+.+.+. .++++++|
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 34457999999999888766431 12344699999999999999999998873 37888887
Q ss_pred cccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEE
Q 009415 115 LSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIF 194 (535)
Q Consensus 115 ~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVL 194 (535)
.+..+. ..| ... ..+...+... ...+|+|
T Consensus 108 ~~l~~~------------------~~g--------~~~---~~~~~~~~~~----------------------~~~vl~i 136 (309)
T 3syl_A 108 DDLVGQ------------------YIG--------HTA---PKTKEVLKRA----------------------MGGVLFI 136 (309)
T ss_dssp GGTCCS------------------STT--------CHH---HHHHHHHHHH----------------------TTSEEEE
T ss_pred HHhhhh------------------ccc--------ccH---HHHHHHHHhc----------------------CCCEEEE
Confidence 554311 000 011 1122222210 1238889
Q ss_pred eCCcccccc----cCCCChHHHHHccccccCCCcEEEEEEeCCCc--------cccccCCCCCCCeeEecCCCCHHHHHH
Q 009415 195 DNFELVREW----DKSSSILPFLFGLSDILKMPEVGMIFISSTSP--------DTYHSNTGYVAPIHVYFPECTEDDLRQ 262 (535)
Q Consensus 195 De~d~L~~~----d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~--------~~f~~~~g~~~p~~I~FppYt~~el~~ 262 (535)
||+|.|... +....++..|+++.+... .++.+|++++... +.+.+|.. ..|+|++|+.+++.+
T Consensus 137 DEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~R~~----~~i~~~~~~~~~~~~ 211 (309)
T 3syl_A 137 DEAYYLYRPDNERDYGQEAIEILLQVMENNR-DDLVVILAGYADRMENFFQSNPGFRSRIA----HHIEFPDYSDEELFE 211 (309)
T ss_dssp ETGGGSCCCC---CCTHHHHHHHHHHHHHCT-TTCEEEEEECHHHHHHHHHHSTTHHHHEE----EEEEECCCCHHHHHH
T ss_pred EChhhhccCCCcccccHHHHHHHHHHHhcCC-CCEEEEEeCChHHHHHHHhhCHHHHHhCC----eEEEcCCcCHHHHHH
Confidence 999999421 113567777877766543 4688888887542 23333432 699999999999999
Q ss_pred HHhhc
Q 009415 263 IFMRN 267 (535)
Q Consensus 263 IL~~~ 267 (535)
|+...
T Consensus 212 il~~~ 216 (309)
T 3syl_A 212 IAGHM 216 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99753
No 14
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=4.8e-12 Score=137.48 Aligned_cols=173 Identities=15% Similarity=0.180 Sum_probs=111.3
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccC---------------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLN---------------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~---------------~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
.|..++ .+.|++.++.+|...+.... ...++++|+||||||||++++.+++.++..++++|
T Consensus 34 rP~~~~----dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 34 APTNLQ----QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp CCSSGG----GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCHH----HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 455554 68899999999999886510 12356999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEE
Q 009415 114 CLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLI 193 (535)
Q Consensus 114 c~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlV 193 (535)
|....+...+ +..+...... ..+.++.... .+. ....+...||+
T Consensus 110 ~s~~~~~~~~-~~~i~~~~~~--------------~~~~~~~~~~---~~~------------------~~~~~~~~vli 153 (516)
T 1sxj_A 110 ASDVRSKTLL-NAGVKNALDN--------------MSVVGYFKHN---EEA------------------QNLNGKHFVII 153 (516)
T ss_dssp TTSCCCHHHH-HHTGGGGTTB--------------CCSTTTTTC-------------------------CCSSTTSEEEE
T ss_pred CCCcchHHHH-HHHHHHHhcc--------------ccHHHHHhhh---hhh------------------hhccCCCeEEE
Confidence 9888776432 2211111100 0111100000 000 00133567999
Q ss_pred EeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 194 FDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 194 LDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
|||+|.+...+ ...+..|.++.+.. +..+|+|+++.....+.... .....|.|++++.+++.++|...
T Consensus 154 IDEid~l~~~~--~~~l~~L~~~l~~~---~~~iIli~~~~~~~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 154 MDEVDGMSGGD--RGGVGQLAQFCRKT---STPLILICNERNLPKMRPFD-RVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp ECSGGGCCTTS--TTHHHHHHHHHHHC---SSCEEEEESCTTSSTTGGGT-TTSEEEECCCCCHHHHHHHHHHH
T ss_pred EECCCccchhh--HHHHHHHHHHHHhc---CCCEEEEEcCCCCccchhhH-hceEEEEeCCCCHHHHHHHHHHH
Confidence 99999997533 55667777765553 45688898875322222111 12268999999999999999653
No 15
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3e-10 Score=118.43 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=100.3
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|=++++.+|...+.-+ ..++..+++|||||||||.++++++.+++.+++.|++.+..+..
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~------ 222 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY------ 222 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS------
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc------
Confidence 4566688888887655321 12334599999999999999999999999999999987664321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--C
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--K 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~ 205 (535)
+.+-...++.+++. .+ ...+.||+|||+|.+.... .
T Consensus 223 -----------------------vGese~~vr~lF~~----Ar---------------~~aP~IIFiDEiDai~~~R~~~ 260 (405)
T 4b4t_J 223 -----------------------IGEGSRMVRELFVM----AR---------------EHAPSIIFMDEIDSIGSTRVEG 260 (405)
T ss_dssp -----------------------TTHHHHHHHHHHHH----HH---------------HTCSEEEEEESSSCCTTSCSCS
T ss_pred -----------------------cchHHHHHHHHHHH----HH---------------HhCCceEeeecchhhccCCCCC
Confidence 11112223334432 11 1246899999999995211 0
Q ss_pred C-------CChHHHHHc-cccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 S-------SSILPFLFG-LSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 ~-------~~lL~~L~r-L~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
. ..++..|+. +.......++.||..+|.++ +.++ |.|-+. ..|+|+..+.++-.+||...
T Consensus 261 ~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAll-RpGRfD-~~I~i~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 261 SGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALL-RPGRID-RKIEFPPPSVAARAEILRIH 331 (405)
T ss_dssp SSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHH-STTSSC-CEEECCCCCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHc-CCCcCc-eEEEcCCcCHHHHHHHHHHH
Confidence 0 113333333 32222234677888888762 2233 444322 59999999999988888643
No 16
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.26 E-value=5.1e-11 Score=123.03 Aligned_cols=184 Identities=17% Similarity=0.166 Sum_probs=101.9
Q ss_pred hcCCChHHHHHHHHHHH---hccCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccC----CHHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLL---GTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCY----SPRILFESIL 128 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll---~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~~----s~r~l~~~Il 128 (535)
+.+.|++.+...+..++ .....++.+++|+||||||||++++++.+.++ .+++.++|.++. +...++...+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAF 123 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHH
Confidence 36888899877755444 33222334799999999999999999999987 478889987643 3334444443
Q ss_pred HHHhhccc-----------------cccCC---CCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCc
Q 009415 129 NQLLLHKK-----------------NAFNG---YSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGK 188 (535)
Q Consensus 129 ~~L~~~~~-----------------~~~~g---~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~ 188 (535)
....+... ....| .-....+ ++...+++.++........ . +.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~------~----g~~~~~ 189 (368)
T 3uk6_A 124 RRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTG----EIKSEVREQINAKVAEWRE------E----GKAEII 189 (368)
T ss_dssp HHSBEECC------CEEHHHHHHHTC----CCSCC-----------CHHHHHHHHHHHHHHHH------H----TC---C
T ss_pred HHHHHHHhhhhccccccHhhhhhhhcccccchhhccCccc----ccHHHHHHHHHHHHHHhhh------h----cccccc
Confidence 33211100 00000 0000111 1222334444333221100 0 000112
Q ss_pred EEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCC---------------CccccccCCCCCCCeeEecC
Q 009415 189 MIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISST---------------SPDTYHSNTGYVAPIHVYFP 253 (535)
Q Consensus 189 ~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~---------------~~~~f~~~~g~~~p~~I~Fp 253 (535)
+.||+|||+|.+. .+.+..|.++.|.... .+ +|+.++. .++.+++|. ..|+|+
T Consensus 190 ~~vl~IDEi~~l~-----~~~~~~L~~~le~~~~-~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-----~~i~~~ 257 (368)
T 3uk6_A 190 PGVLFIDEVHMLD-----IESFSFLNRALESDMA-PV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRL-----LIVSTT 257 (368)
T ss_dssp BCEEEEESGGGSB-----HHHHHHHHHHTTCTTC-CE-EEEEESCSEEECBTSSCEEETTCCHHHHTTE-----EEEEEC
T ss_pred CceEEEhhccccC-----hHHHHHHHHHhhCcCC-Ce-eeeecccceeeeeccCCCCcccCCHHHHhhc-----cEEEec
Confidence 4589999999995 3566777776665332 22 3333331 123444554 468999
Q ss_pred CCCHHHHHHHHhhc
Q 009415 254 ECTEDDLRQIFMRN 267 (535)
Q Consensus 254 pYt~~el~~IL~~~ 267 (535)
||+.+|+.+||...
T Consensus 258 ~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 258 PYSEKDTKQILRIR 271 (368)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999854
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.25 E-value=5.8e-11 Score=124.23 Aligned_cols=158 Identities=14% Similarity=0.080 Sum_probs=97.5
Q ss_pred hcCCChHHHHHHHHHHHhcc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.|.+.++..|..++... ..+..+++||||||||||++++++++.++.++++++|.+..+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~------ 188 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY------ 188 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccc------
Confidence 36889999999998887321 12345799999999999999999999999999999997654321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--- 204 (535)
.+ +. . ..+..+++.. + ...+.||+|||+|.|....
T Consensus 189 ----~g---------------~~-~---~~~~~~~~~a----~---------------~~~~~il~iDEid~l~~~~~~~ 226 (389)
T 3vfd_A 189 ----VG---------------EG-E---KLVRALFAVA----R---------------ELQPSIIFIDQVDSLLCERREG 226 (389)
T ss_dssp ----------------------C-H---HHHHHHHHHH----H---------------HSSSEEEEEETGGGGC------
T ss_pred ----cc---------------hH-H---HHHHHHHHHH----H---------------hcCCeEEEEECchhhcccCCCc
Confidence 00 01 1 1122223221 1 1134688899999993210
Q ss_pred ---CCCChHHHHHccccccC---CCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 ---KSSSILPFLFGLSDILK---MPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 ---~~~~lL~~L~rL~E~~~---~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
....++..|+...+-.. ..++.||..+|.+ .+.+++|.. ..|+|+.++.++..+||...
T Consensus 227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~----~~i~i~~p~~~~r~~il~~~ 294 (389)
T 3vfd_A 227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFI----KRVYVSLPNEETRLLLLKNL 294 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCC----EEEECCCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcc----eEEEcCCcCHHHHHHHHHHH
Confidence 01223333433322111 1346677777763 233444442 57999999999999999754
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.23 E-value=8.7e-11 Score=119.74 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=98.0
Q ss_pred cCCChHHHHHHHHHHHhc----------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGT----------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~----------~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.|.+.....|...+.- ...+..+++||||||||||++++++++.++.++++|+|.+..+.
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-------- 90 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-------- 90 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT--------
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc--------
Confidence 577888998888887721 11233469999999999999999999999999999998543111
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc----
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---- 204 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d---- 204 (535)
...+....++.+++.. + ...+.||+|||+|.|....
T Consensus 91 ---------------------~~g~~~~~~~~~f~~a----~---------------~~~~~vl~iDEid~l~~~~~~~~ 130 (322)
T 3eie_A 91 ---------------------WMGESEKLVKQLFAMA----R---------------ENKPSIIFIDQVDALTGTRGEGE 130 (322)
T ss_dssp ---------------------TGGGHHHHHHHHHHHH----H---------------HTSSEEEEEECGGGGSCC-----
T ss_pred ---------------------ccchHHHHHHHHHHHH----H---------------hcCCeEEEechhhhhhccCCCCc
Confidence 0111112223333221 1 1245788999999995311
Q ss_pred --CCCChHHHHHcccccc--CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 --KSSSILPFLFGLSDIL--KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 --~~~~lL~~L~rL~E~~--~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
....+...|+...+.. ...++.||..+|.+ .+.+.+|.. ..|+|+.++.++..+||...
T Consensus 131 ~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~----~~i~~~~p~~~~r~~il~~~ 196 (322)
T 3eie_A 131 SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFE----RRIYIPLPDLAARTTMFEIN 196 (322)
T ss_dssp -CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCC----EEEECCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccC----eEEEeCCCCHHHHHHHHHHH
Confidence 0112334444332221 12356667677764 223444432 58999999999999999754
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.23 E-value=1.6e-10 Score=113.30 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=91.8
Q ss_pred cCCChHHHHHHHHHHHhc---cC-------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGT---LN-------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~---~~-------~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.|.+....+|..++.. .. ..+.+++||||||||||++++++.+.++.++++++|.+..+..
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~------- 79 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI------- 79 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS-------
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc-------
Confidence 466667776666555432 11 2344699999999999999999999999999999997653210
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc----
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---- 204 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d---- 204 (535)
.| .....++..+.... ...+.+|+|||+|.+....
T Consensus 80 -----------~~-----------~~~~~~~~~~~~a~-------------------~~~~~vl~iDeid~l~~~~~~~~ 118 (262)
T 2qz4_A 80 -----------GG-----------LGAARVRSLFKEAR-------------------ARAPCIVYIDEIDAVGKKRSTTM 118 (262)
T ss_dssp -----------TT-----------HHHHHHHHHHHHHH-------------------HTCSEEEEEECC-----------
T ss_pred -----------cC-----------hhHHHHHHHHHHHH-------------------hcCCeEEEEeCcchhhccccccc
Confidence 00 00112222332211 1235799999999994210
Q ss_pred ------CCCChHHHHHcc-ccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 ------KSSSILPFLFGL-SDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 ------~~~~lL~~L~rL-~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.....+..|+.. .......++.+|+.+|.+. +.+.+ .|- -...++|++++.+|..+|+...
T Consensus 119 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~-~~R-~~~~i~i~~p~~~~r~~il~~~ 189 (262)
T 2qz4_A 119 SGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMR-PGR-LDRHVFIDLPTLQERREIFEQH 189 (262)
T ss_dssp --------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGS-TTS-CCEEEECCSCCHHHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhc-CCc-CCeEEEeCCcCHHHHHHHHHHH
Confidence 112344444432 2221123567777777653 33433 121 1258999999999999998743
No 20
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.22 E-value=1.7e-10 Score=117.90 Aligned_cols=151 Identities=16% Similarity=0.231 Sum_probs=102.5
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhcc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~ 124 (535)
..|..++ .+.|++..+..|...+... ..+.++++|+||||||||++++++.+.++.+++.+||......
T Consensus 23 ~~p~~~~----~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~---- 94 (338)
T 3pfi_A 23 LRPSNFD----GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS---- 94 (338)
T ss_dssp CCCCSGG----GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH----
T ss_pred cCCCCHH----HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch----
Confidence 3454444 6889999999999888753 2345679999999999999999999999999999998654211
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
.+ +...+.. .....+|+|||+|.+..
T Consensus 95 ---------------------------~~----~~~~~~~---------------------~~~~~vl~lDEi~~l~~-- 120 (338)
T 3pfi_A 95 ---------------------------GD----LAAILTN---------------------LSEGDILFIDEIHRLSP-- 120 (338)
T ss_dssp ---------------------------HH----HHHHHHT---------------------CCTTCEEEEETGGGCCH--
T ss_pred ---------------------------hH----HHHHHHh---------------------ccCCCEEEEechhhcCH--
Confidence 11 1112211 11345888999999852
Q ss_pred CCCChHHHHHcccccc-----------------CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHH
Q 009415 205 KSSSILPFLFGLSDIL-----------------KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~-----------------~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL 264 (535)
.....|++..+.. ..+++.+|..+|.. .+.+++|.+ ..|+|++|+.+|+.+|+
T Consensus 121 ---~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~----~~i~l~~~~~~e~~~il 193 (338)
T 3pfi_A 121 ---AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFG----MQFRLEFYKDSELALIL 193 (338)
T ss_dssp ---HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCS----EEEECCCCCHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcC----EEeeCCCcCHHHHHHHH
Confidence 3344444432221 12346777777763 234445542 68999999999999999
Q ss_pred hhc
Q 009415 265 MRN 267 (535)
Q Consensus 265 ~~~ 267 (535)
...
T Consensus 194 ~~~ 196 (338)
T 3pfi_A 194 QKA 196 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 21
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.22 E-value=1.2e-10 Score=115.53 Aligned_cols=160 Identities=11% Similarity=0.146 Sum_probs=97.0
Q ss_pred hhcCCChHHHHHHHHH-------HHhcc-CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 57 LSRFPGRRVQILELLR-------LLGTL-NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 57 ~~~~p~Re~qi~~L~~-------ll~~~-~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
...+.+++.++.++.. .+... ..+..+++|+||||||||++++++.+.++.++++++|.+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~---------- 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM---------- 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGC----------
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHh----------
Confidence 3456666666655555 23221 22345699999999999999999999999999999986421
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc----
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---- 204 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d---- 204 (535)
.|. ........++..++... .....+|+|||+|.|....
T Consensus 102 -----------~g~-------~~~~~~~~~~~~~~~~~-------------------~~~~~vl~iDEid~l~~~~~~~~ 144 (272)
T 1d2n_A 102 -----------IGF-------SETAKCQAMKKIFDDAY-------------------KSQLSCVVVDDIERLLDYVPIGP 144 (272)
T ss_dssp -----------TTC-------CHHHHHHHHHHHHHHHH-------------------TSSEEEEEECCHHHHTTCBTTTT
T ss_pred -----------cCC-------chHHHHHHHHHHHHHHH-------------------hcCCcEEEEEChhhhhccCCCCh
Confidence 010 11122223333333211 2357899999999983211
Q ss_pred -CCCChHHHHHccccccC--CCcEEEEEEeCCC--ccc--cccCCCCCCCeeEecCCCCH-HHHHHHHhhc
Q 009415 205 -KSSSILPFLFGLSDILK--MPEVGMIFISSTS--PDT--YHSNTGYVAPIHVYFPECTE-DDLRQIFMRN 267 (535)
Q Consensus 205 -~~~~lL~~L~rL~E~~~--~~~l~vI~Is~~~--~~~--f~~~~g~~~p~~I~FppYt~-~el~~IL~~~ 267 (535)
....++..|..+.+... ..++.+|..++.+ .+. +..+. ...|+||+++. +++.+|+...
T Consensus 145 ~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf----~~~i~~p~l~~r~~i~~i~~~~ 211 (272)
T 1d2n_A 145 RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF----STTIHVPNIATGEQLLEALELL 211 (272)
T ss_dssp BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTS----SEEEECCCEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhccc----ceEEcCCCccHHHHHHHHHHhc
Confidence 12456666766544321 1234455556654 222 22222 36899999998 8999999764
No 22
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.21 E-value=1.1e-10 Score=118.90 Aligned_cols=196 Identities=19% Similarity=0.214 Sum_probs=109.6
Q ss_pred CCCCCCCCccccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEE
Q 009415 36 SYIPTLGDLVFGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYT 112 (535)
Q Consensus 36 ~~~~~~~~~~f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yV 112 (535)
....++++++.+.... .....+..++......+.+++||||||||||++++.+.+.+ +.+++|+
T Consensus 5 ~~~~~f~~fv~g~~~~-------------~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i 71 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNR-------------LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71 (324)
T ss_dssp CTTCCSSSCCCCTTTH-------------HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcccCCCCCcHH-------------HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3456788887664321 11222333333322245689999999999999999999988 7899999
Q ss_pred eccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEE
Q 009415 113 SCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYL 192 (535)
Q Consensus 113 nc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vl 192 (535)
+|.+. ...+...+... ....|.. .+ . .+.+|
T Consensus 72 ~~~~~------~~~~~~~~~~~---------------~~~~~~~----~~----~--------------------~~~vL 102 (324)
T 1l8q_A 72 SADDF------AQAMVEHLKKG---------------TINEFRN----MY----K--------------------SVDLL 102 (324)
T ss_dssp EHHHH------HHHHHHHHHHT---------------CHHHHHH----HH----H--------------------TCSEE
T ss_pred EHHHH------HHHHHHHHHcC---------------cHHHHHH----Hh----c--------------------CCCEE
Confidence 98543 33333333211 1111111 00 0 24588
Q ss_pred EEeCCcccccc-cCCCChHHHHHccccccCCCcEEEEEEeCCCcc-------ccccCCCCCCCeeEecCCCCHHHHHHHH
Q 009415 193 IFDNFELVREW-DKSSSILPFLFGLSDILKMPEVGMIFISSTSPD-------TYHSNTGYVAPIHVYFPECTEDDLRQIF 264 (535)
Q Consensus 193 VLDe~d~L~~~-d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~-------~f~~~~g~~~p~~I~FppYt~~el~~IL 264 (535)
+|||+|.+... .....++..+-.+.+. +..+|+.++.++. ++.++.... ..+.|+| +.+|..+||
T Consensus 103 ~iDEi~~l~~~~~~~~~l~~~l~~~~~~----~~~iii~~~~~~~~l~~l~~~L~sR~~~~--~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 103 LLDDVQFLSGKERTQIEFFHIFNTLYLL----EKQIILASDRHPQKLDGVSDRLVSRFEGG--ILVEIEL-DNKTRFKII 175 (324)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHT----TCEEEEEESSCGGGCTTSCHHHHHHHHTS--EEEECCC-CHHHHHHHH
T ss_pred EEcCcccccCChHHHHHHHHHHHHHHHC----CCeEEEEecCChHHHHHhhhHhhhcccCc--eEEEeCC-CHHHHHHHH
Confidence 99999998631 0112333333333332 3467777765543 233333211 5799999 999999999
Q ss_pred hhcCCC--hhhhhHHHHhhhhccccccccHHHHHHHHHHhhh
Q 009415 265 MRNQAN--QKLYSSFLDIVLRPFCRITKRVDELSTAFSLLFK 304 (535)
Q Consensus 265 ~~~~~~--~~l~~~f~~~vl~~~~~~~rdl~eL~~~~~~L~~ 304 (535)
...... ..+-+. +++.+...++|+.+|..++..+..
T Consensus 176 ~~~~~~~~~~l~~~----~l~~l~~~~g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 176 KEKLKEFNLELRKE----VIDYLLENTKNVREIEGKIKLIKL 213 (324)
T ss_dssp HHHHHHTTCCCCHH----HHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHH----HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 864311 111112 222222222677777777766543
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.21 E-value=9.1e-11 Score=126.37 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=104.9
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|.+.++.+|...+... ..++.+++||||||||||++++++.+.++.++++|||.+..+.
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~------- 277 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK------- 277 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS-------
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh-------
Confidence 5889999999998887642 2344569999999999999999999999999999998553211
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC--
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-- 205 (535)
.+.+....++..++... .+.+.+|+|||+|.|.....
T Consensus 278 ----------------------~~g~~~~~~~~~f~~A~-------------------~~~p~iLfLDEId~l~~~~~~~ 316 (489)
T 3hu3_A 278 ----------------------LAGESESNLRKAFEEAE-------------------KNAPAIIFIDELDAIAPKREKT 316 (489)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHH-------------------HTCSEEEEEESHHHHCBCTTSC
T ss_pred ----------------------hcchhHHHHHHHHHHHH-------------------hcCCcEEEecchhhhccccccc
Confidence 01111122333333211 22457899999999953110
Q ss_pred ----CCChHHHHHccccccC-CCcEEEEEEeCCC--cc-ccccCCCCCCCeeEecCCCCHHHHHHHHhhcCC
Q 009415 206 ----SSSILPFLFGLSDILK-MPEVGMIFISSTS--PD-TYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQA 269 (535)
Q Consensus 206 ----~~~lL~~L~rL~E~~~-~~~l~vI~Is~~~--~~-~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~ 269 (535)
...++..|+++.+... ..++.||..+|.+ .+ .+.+ .|-+. ..|+|+.++.++..+||.....
T Consensus 317 ~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r-~gRf~-~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR-FGRFD-REVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGS-TTSSC-EEEECCCCCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhC-CCcCc-eEEEeCCCCHHHHHHHHHHHHh
Confidence 0135566666544322 2356777777765 22 2332 22222 5899999999999999986543
No 24
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.19 E-value=1.4e-10 Score=119.92 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=97.0
Q ss_pred cCCChHHHHHHHHHHHhcc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.|.+..+..|...+..+ ..+..+++||||||||||++++++++.++.++++|+|.+..+.
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~-------- 123 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-------- 123 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC--------
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh--------
Confidence 5788899988888776321 1233469999999999999999999999999999998642110
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--CC
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--KS 206 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~~ 206 (535)
. .| +. . ..++.++... + ...+.||+|||+|.|.... ..
T Consensus 124 --~--------~g-------~~-~---~~~~~~f~~a----~---------------~~~~~vl~iDEid~l~~~r~~~~ 163 (355)
T 2qp9_X 124 --W--------MG-------ES-E---KLVKQLFAMA----R---------------ENKPSIIFIDQVDALTGTRGEGE 163 (355)
T ss_dssp --C------------------C-H---HHHHHHHHHH----H---------------HTSSEEEEEECGGGGTC------
T ss_pred --h--------cc-------hH-H---HHHHHHHHHH----H---------------HcCCeEEEEechHhhcccCCCCc
Confidence 0 00 01 1 1122223211 1 1246799999999985310 00
Q ss_pred ----CChHHHHHccccccC--CCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 207 ----SSILPFLFGLSDILK--MPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 207 ----~~lL~~L~rL~E~~~--~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
..+...|+...+... ..++.||..+|.+ .+.+++|.. ..|+|++++.++..+||...
T Consensus 164 ~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~----~~i~i~~P~~~~r~~il~~~ 229 (355)
T 2qp9_X 164 SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFE----RRIYIPLPDLAARTTMFEIN 229 (355)
T ss_dssp CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCC----EEEECCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccC----EEEEeCCcCHHHHHHHHHHH
Confidence 112344443322211 2356777777765 233444443 58899999999999999753
No 25
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=1.1e-11 Score=118.67 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=98.7
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCe--EEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPF--VYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~--~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
..+.||+.++..|...+... ..+..++|+||+|||||++++.+++.+.... ....|..|.+... +....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE--------IEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH--------HHTTC
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH--------HhccC
Confidence 36899999999999988763 1223589999999999999999998875322 2234444432211 11100
Q ss_pred ccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHc
Q 009415 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (535)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~r 215 (535)
.....+. .+.... -...+...++. +.. ....+++.+|||||+|.+.. ..+..|++
T Consensus 94 ~~~~~~~----~~~~~~-~~~~~~~~~~~----~~~-----------~~~~~~~~vlviDe~~~l~~-----~~~~~l~~ 148 (250)
T 1njg_A 94 FVDLIEI----DAASRT-KVEDTRDLLDN----VQY-----------APARGRFKVYLIDEVHMLSR-----HSFNALLK 148 (250)
T ss_dssp CSSEEEE----ETTCGG-GHHHHHHHHHS----CCC-----------SCSSSSSEEEEEETGGGSCH-----HHHHHHHH
T ss_pred CcceEEe----cCcccc-cHHHHHHHHHH----hhh-----------chhcCCceEEEEECcccccH-----HHHHHHHH
Confidence 0000000 000100 01122223321 110 01133568999999999842 34555555
Q ss_pred cccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 216 LSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 216 L~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+.+..+ .++.+|++++... +.+.++. ..|.|+|++.+|+.+++...
T Consensus 149 ~l~~~~-~~~~~i~~t~~~~~~~~~l~~r~-----~~i~l~~l~~~e~~~~l~~~ 197 (250)
T 1njg_A 149 TLEEPP-EHVKFLLATTDPQKLPVTILSRC-----LQFHLKALDVEQIRHQLEHI 197 (250)
T ss_dssp HHHSCC-TTEEEEEEESCGGGSCHHHHTTS-----EEEECCCCCHHHHHHHHHHH
T ss_pred HHhcCC-CceEEEEEeCChHhCCHHHHHHh-----hhccCCCCCHHHHHHHHHHH
Confidence 444332 4688888887642 2233332 68999999999999999753
No 26
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=8.3e-11 Score=118.87 Aligned_cols=180 Identities=16% Similarity=0.172 Sum_probs=110.6
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~-----~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
.+.|++..+..|...+... ..++++|+||+|||||++++.+.+.+. ..+++++|.......
T Consensus 26 ~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~------------ 91 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN------------ 91 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH------------
T ss_pred HhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH------------
Confidence 5889999999999988763 345699999999999999999998863 346677764321100
Q ss_pred ccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
.++..+..+.... ....++..+|||||+|.+.. +....|
T Consensus 92 -----------------------~~~~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~-----~~~~~L 130 (327)
T 1iqp_A 92 -----------------------VIREKVKEFARTK-------------PIGGASFKIIFLDEADALTQ-----DAQQAL 130 (327)
T ss_dssp -----------------------TTHHHHHHHHHSC-------------CGGGCSCEEEEEETGGGSCH-----HHHHHH
T ss_pred -----------------------HHHHHHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCH-----HHHHHH
Confidence 0111111111100 00113567889999999852 345666
Q ss_pred HccccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChh--hhhHHHHhhhhccccc
Q 009415 214 FGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQK--LYSSFLDIVLRPFCRI 288 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~--l~~~f~~~vl~~~~~~ 288 (535)
.++.|..+ .++.+|++++.+. +.+.++. ..+.|+|++.+|+.++|.......+ +-+..+. .+...
T Consensus 131 ~~~le~~~-~~~~~i~~~~~~~~l~~~l~sr~-----~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~----~l~~~ 200 (327)
T 1iqp_A 131 RRTMEMFS-SNVRFILSCNYSSKIIEPIQSRC-----AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQ----AILYI 200 (327)
T ss_dssp HHHHHHTT-TTEEEEEEESCGGGSCHHHHHTE-----EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHH----HHHHH
T ss_pred HHHHHhcC-CCCeEEEEeCCccccCHHHHhhC-----cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHH----HHHHH
Confidence 66655533 4688888887642 2233333 5899999999999999975421111 1112222 22222
Q ss_pred -cccHHHHHHHHHHhh
Q 009415 289 -TKRVDELSTAFSLLF 303 (535)
Q Consensus 289 -~rdl~eL~~~~~~L~ 303 (535)
..|+..+...+..++
T Consensus 201 ~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 201 AEGDMRRAINILQAAA 216 (327)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 346766666666554
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.18 E-value=6.5e-11 Score=119.23 Aligned_cols=186 Identities=14% Similarity=0.174 Sum_probs=114.7
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRIL 123 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l 123 (535)
.|..++ .+.|++..+..|...+.. +..++++||||+|||||++++.+.+.+ +..++++||....+.
T Consensus 12 ~p~~~~----~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--- 82 (319)
T 2chq_A 12 RPRTLD----EVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--- 82 (319)
T ss_dssp SCSSGG----GSCSCHHHHHHHHTTTTT--TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT---
T ss_pred CCCCHH----HHhCCHHHHHHHHHHHhC--CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh---
Confidence 454555 578999999999888765 244569999999999999999999986 245677887542110
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
+.+.+ .+..+.... ....++..+|||||+|.+..
T Consensus 83 -------------------------~~~~~-------~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~- 116 (319)
T 2chq_A 83 -------------------------DVVRH-------KIKEFARTA-------------PIGGAPFKIIFLDEADALTA- 116 (319)
T ss_dssp -------------------------TTSSH-------HHHHHHHSC-------------CSSSCCCEEEEEETGGGSCH-
T ss_pred -------------------------HHHHH-------HHHHHHhcC-------------CCCCCCceEEEEeCCCcCCH-
Confidence 01111 111111100 01124567899999999853
Q ss_pred cCCCChHHHHHccccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCCh--hhhhHHH
Q 009415 204 DKSSSILPFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQ--KLYSSFL 278 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~--~l~~~f~ 278 (535)
+....|.++-|..+ +++.+|++++... +.+.++. ..|.|+|++.+|+.++|....... .+-+..+
T Consensus 117 ----~~~~~L~~~le~~~-~~~~~i~~~~~~~~l~~~l~sr~-----~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l 186 (319)
T 2chq_A 117 ----DAQAALRRTMEMYS-KSCRFILSCNYVSRIIEPIQSRC-----AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGL 186 (319)
T ss_dssp ----HHHHTTGGGTSSSS-SSEEEEEEESCGGGSCHHHHTTC-----EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHH
T ss_pred ----HHHHHHHHHHHhcC-CCCeEEEEeCChhhcchHHHhhC-----eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 33455666655533 4688888887642 2233343 589999999999999997543211 1122222
Q ss_pred Hhhhhccccc-cccHHHHHHHHHHhh
Q 009415 279 DIVLRPFCRI-TKRVDELSTAFSLLF 303 (535)
Q Consensus 279 ~~vl~~~~~~-~rdl~eL~~~~~~L~ 303 (535)
. .+... ..|+..+...+..++
T Consensus 187 ~----~l~~~~~G~~r~~~~~l~~~~ 208 (319)
T 2chq_A 187 E----ALIYISGGDFRKAINALQGAA 208 (319)
T ss_dssp H----HHHHTTTTCHHHHHHHHHHHH
T ss_pred H----HHHHHcCCCHHHHHHHHHHHH
Confidence 2 22222 347777777666654
No 28
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.18 E-value=1.9e-10 Score=116.79 Aligned_cols=145 Identities=14% Similarity=0.227 Sum_probs=98.2
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~ 137 (535)
.+.|+++.+..|...+... ..++ ++++||||||||++++++.+.++.+++++||.... ..
T Consensus 27 ~ivg~~~~~~~l~~~l~~~--~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~---------------- 87 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKG--KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-ID---------------- 87 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTT--CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HH----------------
T ss_pred HHhCcHHHHHHHHHHHHcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HH----------------
Confidence 6778899999999988752 3445 67788899999999999999999999999975422 10
Q ss_pred ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccc
Q 009415 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLS 217 (535)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~ 217 (535)
.++..+..+... ....+...+|+|||+|.+.. .+....|+++.
T Consensus 88 -------------------~i~~~~~~~~~~--------------~~~~~~~~vliiDEi~~l~~----~~~~~~L~~~l 130 (324)
T 3u61_B 88 -------------------FVRGPLTNFASA--------------ASFDGRQKVIVIDEFDRSGL----AESQRHLRSFM 130 (324)
T ss_dssp -------------------HHHTHHHHHHHB--------------CCCSSCEEEEEEESCCCGGG----HHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHhh--------------cccCCCCeEEEEECCcccCc----HHHHHHHHHHH
Confidence 111122221111 01133678999999999951 13445566655
Q ss_pred cccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 218 DILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 218 E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
|... .++.+|++++.. .+.+.++. ..|.|++++.+|..+|+.
T Consensus 131 e~~~-~~~~iI~~~n~~~~l~~~l~sR~-----~~i~~~~~~~~e~~~il~ 175 (324)
T 3u61_B 131 EAYS-SNCSIIITANNIDGIIKPLQSRC-----RVITFGQPTDEDKIEMMK 175 (324)
T ss_dssp HHHG-GGCEEEEEESSGGGSCTTHHHHS-----EEEECCCCCHHHHHHHHH
T ss_pred HhCC-CCcEEEEEeCCccccCHHHHhhC-----cEEEeCCCCHHHHHHHHH
Confidence 5432 468889988875 22344444 589999999999766654
No 29
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=7.6e-11 Score=118.94 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=98.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~-----~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
.+.||+..+..|...+... ..++++|+||+|||||++++.+.+.+. ..++++||....+..
T Consensus 22 ~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~------------ 87 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID------------ 87 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH------------
T ss_pred HHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChH------------
Confidence 6889999999999988763 445699999999999999999998862 456677765432211
Q ss_pred ccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
.+++.++.+.... .....++..+|||||+|.+.. .....|
T Consensus 88 -----------------------~i~~~~~~~~~~~------------~~~~~~~~~viiiDe~~~l~~-----~~~~~L 127 (323)
T 1sxj_B 88 -----------------------VVRNQIKHFAQKK------------LHLPPGKHKIVILDEADSMTA-----GAQQAL 127 (323)
T ss_dssp -----------------------HHHTHHHHHHHBC------------CCCCTTCCEEEEEESGGGSCH-----HHHHTT
T ss_pred -----------------------HHHHHHHHHHhcc------------ccCCCCCceEEEEECcccCCH-----HHHHHH
Confidence 1222222221100 001123467899999999853 234445
Q ss_pred HccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 214 FGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.++-|..+ +++.+|++++.. .+.+.++. ..+.|++++.+|+.++|...
T Consensus 128 ~~~le~~~-~~~~~il~~~~~~~l~~~l~sr~-----~~i~~~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 128 RRTMELYS-NSTRFAFACNQSNKIIEPLQSQC-----AILRYSKLSDEDVLKRLLQI 178 (323)
T ss_dssp HHHHHHTT-TTEEEEEEESCGGGSCHHHHTTS-----EEEECCCCCHHHHHHHHHHH
T ss_pred HHHHhccC-CCceEEEEeCChhhchhHHHhhc-----eEEeecCCCHHHHHHHHHHH
Confidence 55545432 468888888764 12233333 58999999999999999854
No 30
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.17 E-value=8.3e-11 Score=119.15 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=96.2
Q ss_pred cCCChHHHHHHHHHHHhcc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 59 RFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
.+.|++..+..|...+... .....+++|+||+|||||++++++.+.++.++++++|........++
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~----------- 81 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLA----------- 81 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHH-----------
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHH-----------
Confidence 6889999999888887642 12446799999999999999999999999999999986543321111
Q ss_pred ccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHc
Q 009415 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (535)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~r 215 (535)
..+ .. ......+|+|||+|.+.. .....|++
T Consensus 82 ------------------------~~l----~~----------------~~~~~~~l~lDEi~~l~~-----~~~~~L~~ 112 (324)
T 1hqc_A 82 ------------------------AIL----AN----------------SLEEGDILFIDEIHRLSR-----QAEEHLYP 112 (324)
T ss_dssp ------------------------HHH----TT----------------TCCTTCEEEETTTTSCCH-----HHHHHHHH
T ss_pred ------------------------HHH----HH----------------hccCCCEEEEECCccccc-----chHHHHHH
Confidence 111 10 011235888999999853 22333333
Q ss_pred ccccc-----------------CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 216 LSDIL-----------------KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 216 L~E~~-----------------~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
+.+.. ..+++.+|+.++.. .+.++.+.+ ..+.|++++.+|+.+|+...
T Consensus 113 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~----~~i~l~~~~~~e~~~~l~~~ 180 (324)
T 1hqc_A 113 AMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG----IVEHLEYYTPEELAQGVMRD 180 (324)
T ss_dssp HHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCS----CEEECCCCCHHHHHHHHHHH
T ss_pred HHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhccc----EEEecCCCCHHHHHHHHHHH
Confidence 22211 01346777777764 223444442 58999999999999998754
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.17 E-value=5e-10 Score=112.26 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=97.3
Q ss_pred cCCChHHHHHHHHHHHhcc----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.|.+..+..|...+... ..++.+++|+||||||||++++++.+.++.++++++|.+..+..
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~------- 94 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY------- 94 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS-------
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc-------
Confidence 5788899999988876331 12345699999999999999999999999999999996543210
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc----
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---- 204 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d---- 204 (535)
. . .. ...++.++.... ...+.+|+|||+|.+....
T Consensus 95 -----------~-------~-~~---~~~~~~~~~~~~-------------------~~~~~vl~iDEid~l~~~~~~~~ 133 (297)
T 3b9p_A 95 -----------V-------G-DG---EKLVRALFAVAR-------------------HMQPSIIFIDEVDSLLSERSSSE 133 (297)
T ss_dssp -----------C-------S-CH---HHHHHHHHHHHH-------------------HTCSEEEEEETGGGTSBCC----
T ss_pred -----------c-------c-hH---HHHHHHHHHHHH-------------------HcCCcEEEeccHHHhccccccCc
Confidence 0 0 11 112222232211 1245788899999995311
Q ss_pred --CCCChHHHHHccccccC----CCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 --KSSSILPFLFGLSDILK----MPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 --~~~~lL~~L~rL~E~~~----~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
....+...|+...+... ..++.||.++|.+ .+.+.++.. ..++|+.++.++...|+...
T Consensus 134 ~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~----~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 134 HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT----KRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp -CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCC----EEEECCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCC----eEEEeCCcCHHHHHHHHHHH
Confidence 01123333443322211 1246677777764 223334332 58999999999999998643
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.17 E-value=3.5e-10 Score=117.00 Aligned_cols=194 Identities=12% Similarity=0.066 Sum_probs=112.5
Q ss_pred hcCCChHHHHHHHHHHHhc----------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGT----------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~----------~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.|.+..+.+|...+.. ......+++|+||||||||++++++++.++.++++|+|.+..+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~------- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK------- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS-------
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc-------
Confidence 3688999999999887743 11234469999999999999999999999999999999654321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC--
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-- 205 (535)
...+....++.++... + ...+.||+|||+|.|.....
T Consensus 157 ----------------------~~g~~~~~~~~~~~~a----~---------------~~~~~vl~iDEid~l~~~~~~~ 195 (357)
T 3d8b_A 157 ----------------------WVGEGEKMVRALFAVA----R---------------CQQPAVIFIDEIDSLLSQRGDG 195 (357)
T ss_dssp ----------------------STTHHHHHHHHHHHHH----H---------------HTCSEEEEEETHHHHTBC----
T ss_pred ----------------------ccchHHHHHHHHHHHH----H---------------hcCCeEEEEeCchhhhccCCCC
Confidence 0111112222233211 0 12457899999999953110
Q ss_pred ----CCChHHHHHcccc-cc--CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCC--hhh
Q 009415 206 ----SSSILPFLFGLSD-IL--KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQAN--QKL 273 (535)
Q Consensus 206 ----~~~lL~~L~rL~E-~~--~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~--~~l 273 (535)
...++..|+...+ .. ...++.||..+|.+ .+.+++|.. ..++|+.++.++..+||...... ..+
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~----~~i~i~~p~~~~r~~il~~~~~~~~~~l 271 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV----KRLYIPLPEASARKQIVINLMSKEQCCL 271 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCC----EEEECCCCCHHHHHHHHHHHHHTSCBCC
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCc----eEEEeCCcCHHHHHHHHHHHHhhcCCCc
Confidence 0122233332211 11 12357777777764 223444442 58899999999999998643211 111
Q ss_pred hhHHHHhhhhccccccccHHHHHHHHHHhhhh
Q 009415 274 YSSFLDIVLRPFCRITKRVDELSTAFSLLFKR 305 (535)
Q Consensus 274 ~~~f~~~vl~~~~~~~rdl~eL~~~~~~L~~~ 305 (535)
-+..+..+......+ .-.+|..+|...|+.
T Consensus 272 ~~~~l~~la~~t~G~--s~~dl~~l~~~a~~~ 301 (357)
T 3d8b_A 272 SEEEIEQIVQQSDAF--SGADMTQLCREASLG 301 (357)
T ss_dssp CHHHHHHHHHHTTTC--CHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 122222222222222 235666677776765
No 33
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=9e-10 Score=116.42 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=99.3
Q ss_pred CCHHHHhhcCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009415 51 ISLDDLLSRFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (535)
Q Consensus 51 ~~~~~l~~~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s 119 (535)
..+++ +.|=++++.+|...+.-+ ..++..+++|||||||||+++++++.+++.++++|+|.+..+
T Consensus 178 v~~~d----igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 178 ITFDG----IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSGG----GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CChhH----hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 35664 455578887776655321 122335999999999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcc
Q 009415 120 PRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFEL 199 (535)
Q Consensus 120 ~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~ 199 (535)
.. - +++ ...++.++. ..+ ...+.||+|||+|.
T Consensus 254 k~------------------~-------Ges----e~~ir~~F~----~A~---------------~~~P~IifiDEiDa 285 (437)
T 4b4t_L 254 KY------------------I-------GES----ARIIREMFA----YAK---------------EHEPCIIFMDEVDA 285 (437)
T ss_dssp SS------------------S-------SHH----HHHHHHHHH----HHH---------------HSCSEEEEEECCCS
T ss_pred cc------------------c-------hHH----HHHHHHHHH----HHH---------------hcCCceeeeecccc
Confidence 21 0 111 112233332 211 22578999999999
Q ss_pred ccccc---CC---C---ChHHHHH-ccccccCCCcEEEEEEeCCCc--cccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 200 VREWD---KS---S---SILPFLF-GLSDILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 200 L~~~d---~~---~---~lL~~L~-rL~E~~~~~~l~vI~Is~~~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+.... .. . ..+..|+ .+.......++.||+.+|.++ |.-+.|.|-+. ..|+|+..+.++-.+||..
T Consensus 286 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD-~~I~i~lPd~~~R~~Il~~ 363 (437)
T 4b4t_L 286 IGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLD-RKVEIPLPNEAGRLEIFKI 363 (437)
T ss_dssp SSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEE-EEECCCCCCHHHHHHHHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccc-eeeecCCcCHHHHHHHHHH
Confidence 95210 00 1 1233333 332222234678888888762 12122334222 5899999999998888864
No 34
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.4e-09 Score=113.99 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=98.4
Q ss_pred cCCChHHHHHHHHHHHhcc----------CCCCC-CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL----------NSSMP-PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~----------~~~~~-~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|=++++.+|...+.-+ .-++| .+++|||||||||+++++++.+++.+++.|++.+..+..
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~------ 256 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY------ 256 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS------
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc------
Confidence 5566688888877755321 11233 499999999999999999999999999999987654321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--C
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--K 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~ 205 (535)
+.+-...++.++.. .+ ...+.||+|||+|.+.... .
T Consensus 257 -----------------------vGesek~ir~lF~~----Ar---------------~~aP~IIfiDEiDai~~~R~~~ 294 (437)
T 4b4t_I 257 -----------------------LGDGPRLCRQIFKV----AG---------------ENAPSIVFIDEIDAIGTKRYDS 294 (437)
T ss_dssp -----------------------SSHHHHHHHHHHHH----HH---------------HTCSEEEEEEEESSSSCCCSCS
T ss_pred -----------------------CchHHHHHHHHHHH----HH---------------hcCCcEEEEehhhhhcccCCCC
Confidence 11111223333322 11 1246899999999985211 0
Q ss_pred ---C-C---ChHHHHHc-cccccCCCcEEEEEEeCCCc--cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 ---S-S---SILPFLFG-LSDILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 ---~-~---~lL~~L~r-L~E~~~~~~l~vI~Is~~~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
. . ..+..|+. +.......++-||+.+|.++ |.-+.|.|-+. ..|+|+..+.++-.+||...
T Consensus 295 ~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD-~~I~v~lPd~~~R~~Il~~~ 365 (437)
T 4b4t_I 295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRID-RKILFENPDLSTKKKILGIH 365 (437)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEE-EEECCCCCCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCcee-EEEEcCCcCHHHHHHHHHHH
Confidence 0 1 12333332 22222234677888888762 12222444222 58999999999988888643
No 35
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.13 E-value=3.9e-10 Score=116.71 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=51.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHhc-------------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 54 DDLLSRFPGRRVQILELLRLLGT-------------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~-------------~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
+.+.+.+.|.+..+..|...+.. ...+..+++++||||||||++++++.+.++.+++.+||.+.
T Consensus 11 ~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 11 NHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence 34556689999999998888731 11134579999999999999999999999999999999754
No 36
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.12 E-value=6.3e-10 Score=118.55 Aligned_cols=150 Identities=17% Similarity=0.280 Sum_probs=96.7
Q ss_pred CCCCCHHHHhhcCCChHHHH---HHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQI---LELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi---~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~ 124 (535)
..|..++ .+.|.++.+ ..|...+... ..++++||||||||||++++.+.+.++.++..++|..+.
T Consensus 20 ~rP~~l~----~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~------ 87 (447)
T 3pvs_A 20 MRPENLA----QYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG------ 87 (447)
T ss_dssp TCCCSTT----TCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC------
T ss_pred hCCCCHH----HhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC------
Confidence 4455554 677888888 6777777663 346799999999999999999999999999999974432
Q ss_pred HHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc
Q 009415 125 ESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD 204 (535)
Q Consensus 125 ~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d 204 (535)
..+ ++..++...... ..+...+|+|||+|.+...
T Consensus 88 --------------------------~~~----ir~~~~~a~~~~---------------~~~~~~iLfIDEI~~l~~~- 121 (447)
T 3pvs_A 88 --------------------------VKE----IREAIERARQNR---------------NAGRRTILFVDEVHRFNKS- 121 (447)
T ss_dssp --------------------------HHH----HHHHHHHHHHHH---------------HTTCCEEEEEETTTCC----
T ss_pred --------------------------HHH----HHHHHHHHHHhh---------------hcCCCcEEEEeChhhhCHH-
Confidence 111 111222111100 1234678999999999531
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCCc-----cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTSP-----DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~-----~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
....++..+ |. ..+.+|+.++..+ +.++++. ..+.|++++.+++.+||...
T Consensus 122 ~q~~LL~~l----e~---~~v~lI~att~n~~~~l~~aL~sR~-----~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 122 QQDAFLPHI----ED---GTITFIGATTENPSFELNSALLSRA-----RVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp ---CCHHHH----HT---TSCEEEEEESSCGGGSSCHHHHTTE-----EEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHH----hc---CceEEEecCCCCcccccCHHHhCce-----eEEeeCCcCHHHHHHHHHHH
Confidence 123344333 43 3577777765432 2333443 58889999999999999764
No 37
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.11 E-value=9.2e-10 Score=110.76 Aligned_cols=166 Identities=17% Similarity=0.268 Sum_probs=104.5
Q ss_pred HHHhhcCCChHHHHHHHHHHHhccC----C--C-CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHH
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTLN----S--S-MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRIL 123 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~~----~--~-~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l 123 (535)
+.+...+.|.+..+..|...+.... . . ..+++|+||||||||++++.+.+.+ +.++++++|..+.....
T Consensus 13 ~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~- 91 (311)
T 4fcw_A 13 EELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA- 91 (311)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH-
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc-
Confidence 4567789999999999988886631 1 1 2359999999999999999999987 45699999988754321
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
...+.+..+ ...|+ +.... +...+. ....-+|+|||+|.+.
T Consensus 92 ----~~~l~g~~~-~~~~~------~~~~~----~~~~~~----------------------~~~~~vl~lDEi~~l~-- 132 (311)
T 4fcw_A 92 ----VSRLIGAPP-GYVGY------EEGGQ----LTEAVR----------------------RRPYSVILFDAIEKAH-- 132 (311)
T ss_dssp ----HHHHHCCCT-TSTTT------TTCCH----HHHHHH----------------------HCSSEEEEEETGGGSC--
T ss_pred ----HHHhcCCCC-ccccc------cccch----HHHHHH----------------------hCCCeEEEEeChhhcC--
Confidence 222322211 01111 00011 111221 0123588899999985
Q ss_pred cCCCChHHHHHcccccc----------CCCcEEEEEEeCCC-----------------------------ccccccCCCC
Q 009415 204 DKSSSILPFLFGLSDIL----------KMPEVGMIFISSTS-----------------------------PDTYHSNTGY 244 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~----------~~~~l~vI~Is~~~-----------------------------~~~f~~~~g~ 244 (535)
..+...|+++-+.. ...++.+|+++|.. .+.|+.|.
T Consensus 133 ---~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~-- 207 (311)
T 4fcw_A 133 ---PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRL-- 207 (311)
T ss_dssp ---HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTC--
T ss_pred ---HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcC--
Confidence 34555555543321 11355588888872 11233343
Q ss_pred CCCeeEecCCCCHHHHHHHHhh
Q 009415 245 VAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 245 ~~p~~I~FppYt~~el~~IL~~ 266 (535)
+..+.|+|++++++.+|+..
T Consensus 208 --~~~~~~~p~~~~~~~~i~~~ 227 (311)
T 4fcw_A 208 --DEIVVFRPLTKEQIRQIVEI 227 (311)
T ss_dssp --SEEEECCCCCHHHHHHHHHH
T ss_pred --CeEEEeCCCCHHHHHHHHHH
Confidence 36899999999999999974
No 38
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.7e-09 Score=114.30 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=96.7
Q ss_pred cCCChHHHHHHHHHHHhc----c------CCCC-CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGT----L------NSSM-PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~----~------~~~~-~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|=+++..+|...+.- + .-++ ..+++|||||||||+++++++.+++.+++.|++.+..+..
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~------ 255 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY------ 255 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC------
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc------
Confidence 556668888887765322 1 1123 3599999999999999999999999999999987654320
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--C
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--K 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~ 205 (535)
+.+-...++.++.. .+ ...+.||+|||+|.+.... .
T Consensus 256 -----------------------vGese~~ir~lF~~----A~---------------~~aP~IifiDEiDal~~~R~~~ 293 (434)
T 4b4t_M 256 -----------------------IGEGAKLVRDAFAL----AK---------------EKAPTIIFIDELDAIGTKRFDS 293 (434)
T ss_dssp -----------------------SSHHHHHHHHHHHH----HH---------------HHCSEEEEEECTHHHHCCCSSG
T ss_pred -----------------------cchHHHHHHHHHHH----HH---------------hcCCeEEeecchhhhhhccCCC
Confidence 11111223333322 11 1146899999999984210 0
Q ss_pred ---C----CChHHHHHc-cccccCCCcEEEEEEeCCCc--cccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 206 ---S----SSILPFLFG-LSDILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 206 ---~----~~lL~~L~r-L~E~~~~~~l~vI~Is~~~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+ ...+..|+. +.......++-||..+|.++ |.=+.|.|-+ ...|+|+..+.++-.+||..
T Consensus 294 ~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRf-D~~I~i~lPd~~~R~~Il~~ 363 (434)
T 4b4t_M 294 EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRL-DRKIEFPLPSEDSRAQILQI 363 (434)
T ss_dssp GGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSE-EEEEECCCCCHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCce-eEEEEeCCcCHHHHHHHHHH
Confidence 0 012333332 32222234577777787752 1222233322 26999999999998888863
No 39
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2.1e-09 Score=113.57 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=98.5
Q ss_pred cCCChHHHHHHHHHHHhc-----------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGT-----------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~-----------~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|=+++..+|...+.- +..++..+++|||||||||+++++++.+++.+++.|+|.+..+..
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~------ 283 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY------ 283 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS------
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc------
Confidence 566778888888765422 112334599999999999999999999999999999987764321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--C
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--K 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~ 205 (535)
+.+-...++.++.. .+ ...+.||+|||+|.+.... .
T Consensus 284 -----------------------vGesek~ir~lF~~----Ar---------------~~aP~IIfiDEiDai~~~R~~~ 321 (467)
T 4b4t_H 284 -----------------------VGEGARMVRELFEM----AR---------------TKKACIIFFDEIDAVGGARFDD 321 (467)
T ss_dssp -----------------------SSHHHHHHHHHHHH----HH---------------HTCSEEEEEECCTTTSBCCSSS
T ss_pred -----------------------CCHHHHHHHHHHHH----HH---------------hcCCceEeecccccccccccCc
Confidence 11111223333332 11 2257899999999995211 0
Q ss_pred CC--------ChHHHHHccccccCCCcEEEEEEeCCCc--cccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 206 SS--------SILPFLFGLSDILKMPEVGMIFISSTSP--DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 206 ~~--------~lL~~L~rL~E~~~~~~l~vI~Is~~~~--~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.. .+...|..+.......++.||+.+|.++ +.-+.|.|-+. ..|+|+..+.++-.+||..
T Consensus 322 ~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD-~~I~i~lPd~~~R~~Ilk~ 391 (467)
T 4b4t_H 322 GAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRID-RKVEFSLPDLEGRANIFRI 391 (467)
T ss_dssp SCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCC-EEECCCCCCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcccccc-EEEEeCCcCHHHHHHHHHH
Confidence 00 1222232332222234677787888751 12122444222 6999999999998888864
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.1e-09 Score=111.79 Aligned_cols=157 Identities=12% Similarity=0.100 Sum_probs=95.8
Q ss_pred cCCChHHHHHHHHHHHhcc----------CCCCCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l-~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|-+.....|...+..+ ..++..++||||||||||++++++++.+ +.++++|+|.+..+.
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~------- 85 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK------- 85 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS-------
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh-------
Confidence 4566677777777665310 1123459999999999999999999999 788999998764321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC--
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-- 205 (535)
.. ++.- ..++.+++.. + ...+.||+|||+|.+.....
T Consensus 86 -----------~~-------g~~~----~~~~~lf~~a----~---------------~~~~~vl~iDEid~l~~~~~~~ 124 (322)
T 1xwi_A 86 -----------WL-------GESE----KLVKNLFQLA----R---------------ENKPSIIFIDEIDSLCGSRSEN 124 (322)
T ss_dssp -----------SC-------CSCH----HHHHHHHHHH----H---------------HTSSEEEEEETTTGGGCCSSSC
T ss_pred -----------hh-------hHHH----HHHHHHHHHH----H---------------hcCCcEEEeecHHHhccccccc
Confidence 00 1111 1222233221 1 12467899999999942110
Q ss_pred CC----ChHHHHHcccccc--CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 SS----SILPFLFGLSDIL--KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 ~~----~lL~~L~rL~E~~--~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.. .++..|+...+-. ...++.||..+|.+ .+.+++|.. ..|+|+.++.++..+||...
T Consensus 125 ~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~----~~i~i~~P~~~~r~~il~~~ 191 (322)
T 1xwi_A 125 ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE----KRIYIPLPEPHARAAMFKLH 191 (322)
T ss_dssp CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCC----EEEECCCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcC----eEEEeCCcCHHHHHHHHHHH
Confidence 01 2333343322211 12457777778775 223444442 58999999999999999753
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.08 E-value=2.3e-09 Score=108.15 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=98.4
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|-+..+.+|...+... ..++..++||||||||||++++++...++.++++|+|.+.
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l---------- 85 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL---------- 85 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH----------
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH----------
Confidence 4667777777777766431 1234469999999999999999999999999999998542
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--- 204 (535)
...+.+.. .. .++.+++... ...+.+|+|||+|.|....
T Consensus 86 ~~~~~g~~---------------~~----~~~~~f~~a~-------------------~~~p~il~iDEid~l~~~~~~~ 127 (301)
T 3cf0_A 86 LTMWFGES---------------EA----NVREIFDKAR-------------------QAAPCVLFFDELDSIAKARGGN 127 (301)
T ss_dssp HHHHHTTC---------------TT----HHHHHHHHHH-------------------HTCSEEEEECSTTHHHHHHTTT
T ss_pred HhhhcCch---------------HH----HHHHHHHHHH-------------------hcCCeEEEEEChHHHhhccCCC
Confidence 22222210 00 1222332211 1246799999999884210
Q ss_pred ------CCCChHHHHHcccc-ccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 205 ------KSSSILPFLFGLSD-ILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 205 ------~~~~lL~~L~rL~E-~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
....++..|++..+ .....++.||+.+|.+ .+.++. .|-+ ...|+|++++.++..+||...
T Consensus 128 ~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r-~gRf-~~~i~i~~p~~~~r~~il~~~ 198 (301)
T 3cf0_A 128 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR-PGRL-DQLIYIPLPDEKSRVAILKAN 198 (301)
T ss_dssp TCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGS-TTSS-CEEEECCCCCHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhc-CCcc-ceEEecCCcCHHHHHHHHHHH
Confidence 01224455554333 2222467888888875 122332 2211 258999999999999998643
No 42
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.08 E-value=1.1e-09 Score=113.76 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=51.5
Q ss_pred HHHhhcCCChHHHHHHHHHHHhc----------------------------cCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 54 DDLLSRFPGRRVQILELLRLLGT----------------------------LNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~----------------------------~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.+.+.+.|.+...+.|...+.. ...+..+++|+||||||||++++.+.+.+
T Consensus 17 ~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 17 AVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 34556688989888888877620 01134579999999999999999999999
Q ss_pred CCCeEEEeccccC
Q 009415 106 SRPFVYTSCLSCY 118 (535)
Q Consensus 106 ~~~~~yVnc~~~~ 118 (535)
+.++++++|....
T Consensus 97 ~~~~~~~~~~~~~ 109 (376)
T 1um8_A 97 DIPIAISDATSLT 109 (376)
T ss_dssp TCCEEEEEGGGCC
T ss_pred CCCEEEecchhhh
Confidence 9999999997653
No 43
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3e-09 Score=112.21 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=97.2
Q ss_pred cCCChHHHHHHHHHHHhcc-----------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL-----------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~-----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|=+.+..+|...+.-+ ..++..+++|||||||||+++++++.+++.+++.|+|.+..+..
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~------ 246 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY------ 246 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS------
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc------
Confidence 5666688888777655321 12233499999999999999999999999999999987754320
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--- 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--- 204 (535)
+.+-...++.++.. .+ ...+.||+|||+|.+....
T Consensus 247 -----------------------~Ge~e~~ir~lF~~----A~---------------~~aP~IifiDEiD~i~~~R~~~ 284 (428)
T 4b4t_K 247 -----------------------LGEGPRMVRDVFRL----AR---------------ENAPSIIFIDEVDSIATKRFDA 284 (428)
T ss_dssp -----------------------CSHHHHHHHHHHHH----HH---------------HTCSEEEEEECTHHHHCSCSSS
T ss_pred -----------------------cchhHHHHHHHHHH----HH---------------HcCCCeeechhhhhhhccccCC
Confidence 11111223333332 11 1246899999999985210
Q ss_pred --CCC----ChHHHHHc-cccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecC-CCCHHHHHHHHhh
Q 009415 205 --KSS----SILPFLFG-LSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFP-ECTEDDLRQIFMR 266 (535)
Q Consensus 205 --~~~----~lL~~L~r-L~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~Fp-pYt~~el~~IL~~ 266 (535)
... .++..|+. +.......++.||+.+|.++ +.++ |.|-+. ..|+|| ..+.++-.+||..
T Consensus 285 ~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~All-RpGRfd-~~I~~p~lPd~~~R~~Il~~ 355 (428)
T 4b4t_K 285 QTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALL-RPGRLD-RKIEFPSLRDRRERRLIFGT 355 (428)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHH-SSSSEE-EEEECCSSCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhh-cCCcce-EEEEcCCCCCHHHHHHHHHH
Confidence 011 23444443 33332335678888888752 2333 444222 589997 5688877777653
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.07 E-value=4.5e-10 Score=103.40 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=46.2
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEec
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSC 114 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc 114 (535)
+.+.||+.++..+...+.. ....+++|+||+|||||++++.+.+.+ +..+++++|
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred chhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 4689999999999998865 234579999999999999999999987 566777776
No 45
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.06 E-value=1.8e-10 Score=118.78 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=114.2
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCC--eEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRP--FVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
.+.||+.++..|...+... ..++ ++|+||+|||||++++.+.+.+... ....+|..|.+...+. .+..
T Consensus 17 ~~vg~~~~~~~L~~~l~~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~ 87 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE-------QGRF 87 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHT--CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH-------TSCC
T ss_pred hccCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh-------ccCC
Confidence 5889999999999988652 3344 7899999999999999999988632 2233565554322111 1000
Q ss_pred ccc--cCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 136 KNA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 136 ~~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
++- .++. .....+. ++.+++.+.. ....+++.||||||+|.+.. ..+..|
T Consensus 88 ~~~~~~~~~-~~~~~~~-------~~~l~~~~~~---------------~~~~~~~~vliiDe~~~l~~-----~~~~~L 139 (373)
T 1jr3_A 88 VDLIEIDAA-SRTKVED-------TRDLLDNVQY---------------APARGRFKVYLIDEVHMLSR-----HSFNAL 139 (373)
T ss_dssp SSCEEEETT-CSCCSSC-------HHHHHHHTTS---------------CCSSSSSEEEEEECGGGSCH-----HHHHHH
T ss_pred CceEEeccc-ccCCHHH-------HHHHHHHHhh---------------ccccCCeEEEEEECcchhcH-----HHHHHH
Confidence 000 0000 0011122 2223322110 01134567889999999853 345566
Q ss_pred HccccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChhhhhHHHHhhhhccccc-c
Q 009415 214 FGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQKLYSSFLDIVLRPFCRI-T 289 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~l~~~f~~~vl~~~~~~-~ 289 (535)
+++-|..+ .++.+|++++... ..+.++. ..+.|++++.+|+.++|.......++ .+-...++.+... .
T Consensus 140 l~~le~~~-~~~~~Il~~~~~~~l~~~l~sr~-----~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~ 211 (373)
T 1jr3_A 140 LKTLEEPP-EHVKFLLATTDPQKLPVTILSRC-----LQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAE 211 (373)
T ss_dssp HHHHHSCC-SSEEEEEEESCGGGSCHHHHTTS-----EEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSS
T ss_pred HHHHhcCC-CceEEEEEeCChHhCcHHHHhhe-----eEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCC
Confidence 66555432 4688888887642 2233333 68999999999999999754311111 0111122223333 3
Q ss_pred ccHHHHHHHHHHhh
Q 009415 290 KRVDELSTAFSLLF 303 (535)
Q Consensus 290 rdl~eL~~~~~~L~ 303 (535)
.++..+...+.+++
T Consensus 212 G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 212 GSLRDALSLTDQAI 225 (373)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 47777777777765
No 46
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.06 E-value=6e-10 Score=118.55 Aligned_cols=165 Identities=16% Similarity=0.257 Sum_probs=96.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFV 155 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~ 155 (535)
+++++||||+|||||++++++.+.+ +.+++|++|... ...+...+... ....|.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~------~~~~~~~~~~~---------------~~~~~~ 188 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF------LNDLVDSMKEG---------------KLNEFR 188 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH------HHHHHHHHHTT---------------CHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH------HHHHHHHHHcc---------------cHHHHH
Confidence 5679999999999999999999987 788999998652 23344443211 111111
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc-CCCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 156 IFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD-KSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 156 ~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d-~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
... ...+.+|+|||+|.+...+ ....++..|-.+.+ .+..+|++++.+
T Consensus 189 -----------~~~----------------~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~----~~~~iIitt~~~ 237 (440)
T 2z4s_A 189 -----------EKY----------------RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD----SGKQIVICSDRE 237 (440)
T ss_dssp -----------HHH----------------TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT----TTCEEEEEESSC
T ss_pred -----------HHh----------------cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH----CCCeEEEEECCC
Confidence 110 1134688999999996310 11234444433333 245677777765
Q ss_pred ccc-------cccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChh--hhhHHHHhhhhccccccccHHHHHHHHHHh
Q 009415 235 PDT-------YHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQK--LYSSFLDIVLRPFCRITKRVDELSTAFSLL 302 (535)
Q Consensus 235 ~~~-------f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~--l~~~f~~~vl~~~~~~~rdl~eL~~~~~~L 302 (535)
+.. +.+|.... ..+.|++++.++..+||........ +-+..+..+.. ...+|+.+|..++..+
T Consensus 238 ~~~l~~l~~~L~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~---~~~gn~R~l~~~L~~~ 309 (440)
T 2z4s_A 238 PQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAE---NVDDNLRRLRGAIIKL 309 (440)
T ss_dssp GGGCSSCCHHHHHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH---HCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---hcCCCHHHHHHHHHHH
Confidence 433 33333211 4789999999999999986432111 11111221111 2335777777777665
No 47
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=1.4e-09 Score=111.15 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=102.0
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC------CCeEEEeccccCCHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS------RPFVYTSCLSCYSPRI 122 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~------~~~~yVnc~~~~s~r~ 122 (535)
+|..++ .+.|+++.+..|...+... ..++++|+||||||||++++.+.+.+. ..++++||........
T Consensus 32 ~p~~~~----~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
T 1sxj_D 32 RPKNLD----EVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI 105 (353)
T ss_dssp CCSSTT----TCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH
T ss_pred CCCCHH----HhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH
Confidence 444444 5778888888888887652 335699999999999999999998863 4678888866433221
Q ss_pred HHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
+...+..+..... ...... .. . ..+.+...||+|||+|.+..
T Consensus 106 -~~~~~~~~~~~~~-----------~~~~~~-------~~----~---------------~~~~~~~~vliiDE~~~l~~ 147 (353)
T 1sxj_D 106 -VREKVKNFARLTV-----------SKPSKH-------DL----E---------------NYPCPPYKIIILDEADSMTA 147 (353)
T ss_dssp -HTTHHHHHHHSCC-----------CCCCTT-------HH----H---------------HSCCCSCEEEEETTGGGSCH
T ss_pred -HHHHHHHHhhhcc-----------cccchh-------hc----c---------------cCCCCCceEEEEECCCccCH
Confidence 2222222211100 000000 00 0 01123457889999999853
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.....|+++.|... .+..+|++++.+. +.+.++. ..+.|+|++.+++.++|...
T Consensus 148 -----~~~~~Ll~~le~~~-~~~~~il~~~~~~~l~~~l~sR~-----~~i~~~~~~~~~~~~~l~~~ 204 (353)
T 1sxj_D 148 -----DAQSALRRTMETYS-GVTRFCLICNYVTRIIDPLASQC-----SKFRFKALDASNAIDRLRFI 204 (353)
T ss_dssp -----HHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHHHS-----EEEECCCCCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcC-CCceEEEEeCchhhCcchhhccC-----ceEEeCCCCHHHHHHHHHHH
Confidence 33455666545432 4677888887642 2333333 58999999999999999864
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.03 E-value=1.6e-09 Score=115.46 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=97.0
Q ss_pred cCCChHHHHHHHHHHHhcc----------CCCCCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTL----------NSSMPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~----------~~~~~~l~I~G~~GTGKTs~v~~vl~~l-~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|.+.....|...+..+ ..++.+++||||||||||++++++++.+ +.++++|+|.+..+.
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~------- 207 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK------- 207 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------------
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh-------
Confidence 5778899988888776321 1233469999999999999999999999 788999998654321
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--C
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--K 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~ 205 (535)
..+. .... ++.++.... ...+.||+|||+|.|.... .
T Consensus 208 ---~~g~------------~~~~-------~~~~f~~a~-------------------~~~~~vl~iDEid~l~~~~~~~ 246 (444)
T 2zan_A 208 ---WLGE------------SEKL-------VKNLFQLAR-------------------ENKPSIIFIDEIDSLCGSRSEN 246 (444)
T ss_dssp -------------------CCCT-------HHHHHHHHH-------------------HSCSEEEEESCTTTTCCCSSCC
T ss_pred ---hcch------------HHHH-------HHHHHHHHH-------------------HcCCeEEEEechHhhccCCCCc
Confidence 1111 0011 222232210 1245788999999994211 0
Q ss_pred ----CCChHHHHHcccccc--CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 ----SSSILPFLFGLSDIL--KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 ----~~~lL~~L~rL~E~~--~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
...++..|+...+-. ...++.||+.+|.+ .+.+++|.. ..|+|+.++.++..+||...
T Consensus 247 ~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~----~~i~i~~P~~~~r~~il~~~ 313 (444)
T 2zan_A 247 ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE----KRIYIPLPEAHARAAMFRLH 313 (444)
T ss_dssp CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCC----EEEECCCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcc----eEEEeCCcCHHHHHHHHHHH
Confidence 113445555543321 12457777788775 233444442 58999999999999998754
No 49
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=6.8e-09 Score=106.40 Aligned_cols=220 Identities=12% Similarity=0.141 Sum_probs=108.7
Q ss_pred CCCCHHHHhhcCCChHHHHHHHHHHH-hccCCCCCCeEEECCCCCCHHHHHHHHHHhc-C--CCeEEEeccccCCHHHHH
Q 009415 49 EPISLDDLLSRFPGRRVQILELLRLL-GTLNSSMPPLFVYGSASTGKTSIIIQVFRHL-S--RPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 49 ~~~~~~~l~~~~p~Re~qi~~L~~ll-~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l-~--~~~~yVnc~~~~s~r~l~ 124 (535)
.|..++ .+.|++..+..|...+ .. +..++++|+||+||||||+++.+++.+ + ...++++......+..-
T Consensus 9 rP~~~~----~~vg~~~~~~~l~~~~~~~--~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~- 81 (354)
T 1sxj_E 9 RPKSLN----ALSHNEELTNFLKSLSDQP--RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR- 81 (354)
T ss_dssp CCCSGG----GCCSCHHHHHHHHTTTTCT--TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred CCCCHH----HhcCCHHHHHHHHHHHhhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc-
Confidence 455555 5678899988888877 43 234569999999999999999999965 2 11222221110000000
Q ss_pred HHHHHHHhhcccc---ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccc
Q 009415 125 ESILNQLLLHKKN---AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVR 201 (535)
Q Consensus 125 ~~Il~~L~~~~~~---~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~ 201 (535)
...+...... ..++. ...... . ..+++.++.+..... . ...-...+ -.+++-||+|||++.|.
T Consensus 82 ---~~~~~~~~~~~~~~~~~~--~~~~~~-~---~~~~~~i~~~~~~~~-~---~~~~~ls~-l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 82 ---KLELNVVSSPYHLEITPS--DMGNND-R---IVIQELLKEVAQMEQ-V---DFQDSKDG-LAHRYKCVIINEANSLT 147 (354)
T ss_dssp -------CCEECSSEEEECCC------CC-H---HHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSC
T ss_pred ---cceeeeecccceEEecHh--hcCCcc-h---HHHHHHHHHHHHhcc-c---cccccccc-cCCCCeEEEEeCccccC
Confidence 0000000000 00000 000000 0 012222322211000 0 00000000 01245688899999963
Q ss_pred cccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcCCChh--hh-h
Q 009415 202 EWDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQK--LY-S 275 (535)
Q Consensus 202 ~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~~--l~-~ 275 (535)
......|+++-|... .+..+|++++.+ .+.+.+|+ ..+.|+|++.+++.++|.......+ +- +
T Consensus 148 -----~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (354)
T 1sxj_E 148 -----KDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQC-----LLIRCPAPSDSEISTILSDVVTNERIQLETK 216 (354)
T ss_dssp -----HHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTS-----EEEECCCCCHHHHHHHHHHHHHHHTCEECCS
T ss_pred -----HHHHHHHHHHHHhhc-CCCEEEEEeCCHHHHHHHHHhhc-----eEEecCCcCHHHHHHHHHHHHHHcCCCCCcH
Confidence 233455555444432 468899999875 23344444 6899999999999999986432111 11 2
Q ss_pred HHHHhhhhccccc-cccHHHHHHHHHHhhh
Q 009415 276 SFLDIVLRPFCRI-TKRVDELSTAFSLLFK 304 (535)
Q Consensus 276 ~f~~~vl~~~~~~-~rdl~eL~~~~~~L~~ 304 (535)
..+. .+... ..|+..+...++.++.
T Consensus 217 ~~l~----~i~~~~~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 217 DILK----RIAQASNGNLRVSLLMLESMAL 242 (354)
T ss_dssp HHHH----HHHHHHTTCHHHHHHHHTHHHH
T ss_pred HHHH----HHHHHcCCCHHHHHHHHHHHHH
Confidence 2222 22232 3477777777777654
No 50
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.01 E-value=2.4e-09 Score=108.27 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=99.3
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
.+.|++.++.++...+........+++|+|+||||||++++++.+.. +.++++|||..... .+++ ..|.++.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~--~l~~---~~lfg~~ 77 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE--SLLE---SELFGHE 77 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH--HHHH---HHHTCCC
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh--HHHH---HHhcCcc
Confidence 57888999999888887654455689999999999999999999875 47899999987532 2332 2444443
Q ss_pred ccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHc
Q 009415 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (535)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~r 215 (535)
+....|.. ..... .++. ..+ -+|+|||+|.+.. ++...|++
T Consensus 78 ~g~~tg~~----~~~~g--------~~~~--------------------a~~--g~L~LDEi~~l~~-----~~q~~Ll~ 118 (304)
T 1ojl_A 78 KGAFTGAD----KRREG--------RFVE--------------------ADG--GTLFLDEIGDISP-----LMQVRLLR 118 (304)
T ss_dssp SSCCC-------CCCCC--------HHHH--------------------HTT--SEEEEESCTTCCH-----HHHHHHHH
T ss_pred ccccCchh----hhhcC--------HHHh--------------------cCC--CEEEEeccccCCH-----HHHHHHHH
Confidence 22111110 01111 1111 011 2688999999952 33444544
Q ss_pred cccccC----------CCcEEEEEEeCCCccc----------cccCCCCCCCeeEecCCCC--HHHHHHHHh
Q 009415 216 LSDILK----------MPEVGMIFISSTSPDT----------YHSNTGYVAPIHVYFPECT--EDDLRQIFM 265 (535)
Q Consensus 216 L~E~~~----------~~~l~vI~Is~~~~~~----------f~~~~g~~~p~~I~FppYt--~~el~~IL~ 265 (535)
+-+... ..++.+|+.+|..++. ++.+.. ...|++||+. .+++..++.
T Consensus 119 ~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~---~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 119 AIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLN---VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHS---SEEEECCCSGGGGGGHHHHHH
T ss_pred HHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcC---eeEEeccCHHHhHhhHHHHHH
Confidence 322210 1357899999876332 233332 3689999998 577776664
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.00 E-value=4.1e-09 Score=103.42 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=92.7
Q ss_pred cCCChHHHHHHHHHHHhc---c-------CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGT---L-------NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~---~-------~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.|-+....+|..++.. . ...+.+++|+||||||||++++++...++.++++++|......
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-------- 84 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-------- 84 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS--------
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH--------
Confidence 456667666666554432 1 1123469999999999999999999999999999998764321
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCC--
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKS-- 206 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~-- 206 (535)
..| +... .++.+++.. + ...+.+++|||+|.+......
T Consensus 85 ----------~~~-------~~~~----~~~~~~~~a----~---------------~~~~~il~iDeid~l~~~~~~~~ 124 (257)
T 1lv7_A 85 ----------FVG-------VGAS----RVRDMFEQA----K---------------KAAPCIIFIDEIDAVGRQRGAGL 124 (257)
T ss_dssp ----------CCC-------CCHH----HHHHHHHHH----H---------------TTCSEEEEETTHHHHTCCCSTTS
T ss_pred ----------hhh-------hhHH----HHHHHHHHH----H---------------HcCCeeehhhhhhhhccCCCCCc
Confidence 001 1111 122233221 0 224578999999988531100
Q ss_pred ---C----ChHHHHHc-cccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 207 ---S----SILPFLFG-LSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 207 ---~----~lL~~L~r-L~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
. .++..++. +.......++.||+.+|.+ .+.+.. .+-+ ...|+|+.++.++-.+|+...
T Consensus 125 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r-~~rf-~~~i~i~~P~~~~r~~il~~~ 194 (257)
T 1lv7_A 125 GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLR-PGRF-DRQVVVGLPDVRGREQILKVH 194 (257)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGS-TTSS-CEEEECCCCCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcC-CCcC-CeEEEeCCCCHHHHHHHHHHH
Confidence 0 23333332 2222222356777777765 122322 2211 248899999999998888643
No 52
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.97 E-value=3.1e-09 Score=104.74 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=93.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhcc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHK 135 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~~ 135 (535)
.+.|++..+..+...+........+++|+|++|||||++++.+.+.+. .++++|||.... .. +++ ..+.+..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~-~~-~~~---~~l~g~~ 81 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-EN-LLD---SELFGHE 81 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC-HH-HHH---HHHHCCC
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC-hh-HHH---HHhcCCc
Confidence 466888888888777665434456899999999999999999999875 689999998763 22 222 2333321
Q ss_pred ccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHc
Q 009415 136 KNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFG 215 (535)
Q Consensus 136 ~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~r 215 (535)
+....|.. . .. ...++. .. .-+|+|||+|.+.. +....|++
T Consensus 82 ~~~~~g~~----~-~~-------~~~l~~--------------------a~--~~~l~lDEi~~l~~-----~~q~~Ll~ 122 (265)
T 2bjv_A 82 AGAFTGAQ----K-RH-------PGRFER--------------------AD--GGTLFLDELATAPM-----MVQEKLLR 122 (265)
T ss_dssp --------------CC-------CCHHHH--------------------TT--TSEEEEESGGGSCH-----HHHHHHHH
T ss_pred cccccccc----c-cc-------cchhhh--------------------cC--CcEEEEechHhcCH-----HHHHHHHH
Confidence 11111100 0 00 001110 01 13788999999953 33444544
Q ss_pred ccccc----------CCCcEEEEEEeCCCccc----------cccCCCCCCCeeEecCCCCH--HHHHHHHh
Q 009415 216 LSDIL----------KMPEVGMIFISSTSPDT----------YHSNTGYVAPIHVYFPECTE--DDLRQIFM 265 (535)
Q Consensus 216 L~E~~----------~~~~l~vI~Is~~~~~~----------f~~~~g~~~p~~I~FppYt~--~el~~IL~ 265 (535)
+-+.. ...++.+|+.+|..+.. ++.+... ..|.+||++. +++..++.
T Consensus 123 ~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~---~~i~lp~L~~R~~di~~l~~ 191 (265)
T 2bjv_A 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF---DVVQLPPLRERESDIMLMAE 191 (265)
T ss_dssp HHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS---EEEECCCGGGCHHHHHHHHH
T ss_pred HHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC---cEEeCCChhhhhHHHHHHHH
Confidence 43320 01357889888876432 3334322 5899999986 67776654
No 53
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.96 E-value=6.6e-09 Score=110.99 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=47.1
Q ss_pred hcCCChHHHHHHHHHHHhc---cCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccC
Q 009415 58 SRFPGRRVQILELLRLLGT---LNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCY 118 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~---~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~~ 118 (535)
+.+.|.++....+..++.. ...++.++++|||||||||++++++.+.++ .++++++|.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 4667778887765555433 222334699999999999999999999998 899999987654
No 54
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.96 E-value=1.3e-08 Score=109.05 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=94.4
Q ss_pred cCCChHHHHHHHHHHHhc---c------C-CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGT---L------N-SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~---~------~-~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.|-++.+.+|..++.. . . ..+..++|+||||||||++++++...++.++++++|.+.....
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~------- 89 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF------- 89 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC-------
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH-------
Confidence 455666666555554422 1 1 1233599999999999999999999999999999997754210
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC---
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK--- 205 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~--- 205 (535)
.|. . ...++.++.... ...+.||+|||+|.|.....
T Consensus 90 -----------~g~-------~----~~~~r~lf~~A~-------------------~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 90 -----------VGV-------G----AARVRDLFAQAK-------------------AHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp -----------TTH-------H----HHHHHHHHHHHH-------------------HTCSEEEEEETGGGTCCC-----
T ss_pred -----------hcc-------c----HHHHHHHHHHHH-------------------hcCCCEEEEechhhhhhhccccc
Confidence 000 0 112233333211 12467999999999853110
Q ss_pred --C----CChHHHHHcccccc-CCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 206 --S----SSILPFLFGLSDIL-KMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 206 --~----~~lL~~L~rL~E~~-~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
. ..++..|+...+-. ...++.||..+|.+ .+.-+.+.|-+. ..|.|++++.++-.+||...
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd-~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFD-KKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcce-eEeecCCCCHHHHHHHHHHH
Confidence 0 12444454432211 11357777778775 122222333222 48999999999988888643
No 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.94 E-value=1.5e-09 Score=111.23 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHHHHhccCCCCCC-eEEECCCCCCHHHHHHHHHHhcCCCeE--EEeccccCCHHHHHHHHHHHHhhccc
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPP-LFVYGSASTGKTSIIIQVFRHLSRPFV--YTSCLSCYSPRILFESILNQLLLHKK 136 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~-l~I~G~~GTGKTs~v~~vl~~l~~~~~--yVnc~~~~s~r~l~~~Il~~L~~~~~ 136 (535)
+|..++.+..|...+.. +..++ ++++||+|||||++++.+++.+..... ...|..|.+.+.+.. +..+
T Consensus 4 ~pw~~~~~~~l~~~i~~--~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~-------~~~~ 74 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQA--GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQA-------GTHP 74 (334)
T ss_dssp CGGGHHHHHHHHHHHHT--TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHH-------TCCT
T ss_pred CCchHHHHHHHHHHHHc--CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc-------CCCC
Confidence 56667788888888765 24555 889999999999999999998863321 234666655432221 1100
Q ss_pred cc--cCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHH
Q 009415 137 NA--FNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLF 214 (535)
Q Consensus 137 ~~--~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~ 214 (535)
+- .++. .......+. .++++++.+.. ....++..|+||||+|.|.. +-..+|+
T Consensus 75 d~~~~~~~-~~~~~~~i~----~ir~l~~~~~~---------------~~~~~~~kvviIdead~l~~-----~a~naLL 129 (334)
T 1a5t_A 75 DYYTLAPE-KGKNTLGVD----AVREVTEKLNE---------------HARLGGAKVVWVTDAALLTD-----AAANALL 129 (334)
T ss_dssp TEEEECCC-TTCSSBCHH----HHHHHHHHTTS---------------CCTTSSCEEEEESCGGGBCH-----HHHHHHH
T ss_pred CEEEEecc-ccCCCCCHH----HHHHHHHHHhh---------------ccccCCcEEEEECchhhcCH-----HHHHHHH
Confidence 00 0000 000111222 23334432210 01134567888999999953 3345666
Q ss_pred ccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 215 GLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 215 rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
+.-|..+ +++.+|++++.+ ++.+.+|+ ..+.|++++.+|+.++|....
T Consensus 130 k~lEep~-~~~~~Il~t~~~~~l~~ti~SRc-----~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 130 KTLEEPP-AETWFFLATREPERLLATLRSRC-----RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp HHHTSCC-TTEEEEEEESCGGGSCHHHHTTS-----EEEECCCCCHHHHHHHHHHHC
T ss_pred HHhcCCC-CCeEEEEEeCChHhCcHHHhhcc-----eeeeCCCCCHHHHHHHHHHhc
Confidence 6656543 578889998874 23344454 689999999999999998764
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.93 E-value=3.9e-09 Score=119.72 Aligned_cols=165 Identities=15% Similarity=0.223 Sum_probs=104.8
Q ss_pred HHhhcCCChHHHHHHHHHHHhccC-------CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 55 DLLSRFPGRRVQILELLRLLGTLN-------SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~~-------~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+...+.|.+..+..|...+.... .+..+++++||||||||++++.+.+.++.+++++||.+..... .
T Consensus 455 ~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~-----~ 529 (758)
T 1r6b_X 455 RLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH-----T 529 (758)
T ss_dssp HHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSS-----C
T ss_pred HHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchh-----h
Confidence 356679999999998888775421 1223699999999999999999999999999999998764320 0
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCC
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS 207 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~ 207 (535)
+..+.+. ..|| .. +. -...+...+. .....||+|||+|++. +
T Consensus 530 ~~~l~g~----~~g~--------~g-~~--~~~~l~~~~~------------------~~~~~vl~lDEi~~~~-----~ 571 (758)
T 1r6b_X 530 VSRLIGA----PPGY--------VG-FD--QGGLLTDAVI------------------KHPHAVLLLDEIEKAH-----P 571 (758)
T ss_dssp CSSSCCC----CSCS--------HH-HH--HTTHHHHHHH------------------HCSSEEEEEETGGGSC-----H
T ss_pred HhhhcCC----CCCC--------cC-cc--ccchHHHHHH------------------hCCCcEEEEeCccccC-----H
Confidence 0001110 0011 10 00 0011111111 1134688899999884 4
Q ss_pred ChHHHHHccccccC----------CCcEEEEEEeCCCc----------------------------cccccCCCCCCCee
Q 009415 208 SILPFLFGLSDILK----------MPEVGMIFISSTSP----------------------------DTYHSNTGYVAPIH 249 (535)
Q Consensus 208 ~lL~~L~rL~E~~~----------~~~l~vI~Is~~~~----------------------------~~f~~~~g~~~p~~ 249 (535)
+++..|+++.|.-. ..++.+|+.+|... +.|+.|+. ..
T Consensus 572 ~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~----~~ 647 (758)
T 1r6b_X 572 DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD----NI 647 (758)
T ss_dssp HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS----EE
T ss_pred HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC----cc
Confidence 57777777655310 13566888888632 22334443 57
Q ss_pred EecCCCCHHHHHHHHhh
Q 009415 250 VYFPECTEDDLRQIFMR 266 (535)
Q Consensus 250 I~FppYt~~el~~IL~~ 266 (535)
|.|+|++.+++.+|+..
T Consensus 648 i~~~~l~~~~~~~i~~~ 664 (758)
T 1r6b_X 648 IWFDHLSTDVIHQVVDK 664 (758)
T ss_dssp EECCCCCHHHHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHH
Confidence 99999999999999974
No 57
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.93 E-value=1.8e-09 Score=108.71 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=32.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.+++|||||||||++++++++.++.++++++|.+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 48899999999999999999999999999998553
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.93 E-value=3.2e-09 Score=122.03 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=90.3
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.||+.++..+...+.. ...++++|+||||||||++++.+++.+ +.++++++|......
T Consensus 170 d~viGr~~~i~~l~~~l~~--~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g------- 240 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG------- 240 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCcHHHHHHHHHHHhc--CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc-------
Confidence 3589999999999998865 234579999999999999999999987 677888988443210
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc---c
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW---D 204 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~---d 204 (535)
. . ...+|...+..++..+.. .+.+.||+|||+|.|... +
T Consensus 241 ------~----------~----~~g~~~~~l~~~~~~~~~------------------~~~~~iL~IDEi~~l~~~~~~~ 282 (854)
T 1qvr_A 241 ------A----------K----YRGEFEERLKAVIQEVVQ------------------SQGEVILFIDELHTVVGAGKAE 282 (854)
T ss_dssp -------------------------CHHHHHHHHHHHHHT------------------TCSSEEEEECCC----------
T ss_pred ------C----------c----cchHHHHHHHHHHHHHHh------------------cCCCeEEEEecHHHHhccCCcc
Confidence 0 0 011233444445543211 234689999999999521 1
Q ss_pred CCCChHHHHHccccccCCCcEEEEEEeCCC-------ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 205 KSSSILPFLFGLSDILKMPEVGMIFISSTS-------PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 205 ~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~-------~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
+..++...|..+.+. .++.+|+.++.. .+.+.++. ..|.|++++.++..+||..
T Consensus 283 g~~~~~~~L~~~l~~---~~i~~I~at~~~~~~~~~~d~aL~rRf-----~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 283 GAVDAGNMLKPALAR---GELRLIGATTLDEYREIEKDPALERRF-----QPVYVDEPTVEETISILRG 343 (854)
T ss_dssp ---------HHHHHT---TCCCEEEEECHHHHHHHTTCTTTCSCC-----CCEEECCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhC---CCeEEEEecCchHHhhhccCHHHHhCC-----ceEEeCCCCHHHHHHHHHh
Confidence 112222233332232 346677766643 12233333 3599999999999999963
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.92 E-value=3.2e-09 Score=120.45 Aligned_cols=152 Identities=11% Similarity=0.195 Sum_probs=101.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHhccC----C---CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHH
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRIL 123 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l 123 (535)
+.+.+.+.|.+..+..|...+.... . +.++++++||||||||++++++.+.+ +.++++|||.++....
T Consensus 487 ~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~-- 564 (758)
T 3pxi_A 487 NILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH-- 564 (758)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC--
T ss_pred HHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccc--
Confidence 3466789999999999988886531 1 11259999999999999999999987 5789999997764221
Q ss_pred HHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc
Q 009415 124 FESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW 203 (535)
Q Consensus 124 ~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~ 203 (535)
. . .... +...+. . ...-||+|||+|.+.
T Consensus 565 ----------------~---~-----~~~~----l~~~~~---~-------------------~~~~vl~lDEi~~~~-- 592 (758)
T 3pxi_A 565 ----------------S---T-----SGGQ----LTEKVR---R-------------------KPYSVVLLDAIEKAH-- 592 (758)
T ss_dssp ----------------C---C-----C-------CHHHHH---H-------------------CSSSEEEEECGGGSC--
T ss_pred ----------------c---c-----ccch----hhHHHH---h-------------------CCCeEEEEeCccccC--
Confidence 0 0 0000 111111 0 122388899999884
Q ss_pred cCCCChHHHHHcccccc----------CCCcEEEEEEeCCCc---------------cccccCCCCCCCeeEecCCCCHH
Q 009415 204 DKSSSILPFLFGLSDIL----------KMPEVGMIFISSTSP---------------DTYHSNTGYVAPIHVYFPECTED 258 (535)
Q Consensus 204 d~~~~lL~~L~rL~E~~----------~~~~l~vI~Is~~~~---------------~~f~~~~g~~~p~~I~FppYt~~ 258 (535)
.+++..|+++-+.- ...++.+|+.+|.++ ++|+.|+. ..|.|+|++.+
T Consensus 593 ---~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~----~~i~~~~l~~~ 665 (758)
T 3pxi_A 593 ---PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRID----EIIVFHSLEKK 665 (758)
T ss_dssp ---HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSS----EEEECC--CHH
T ss_pred ---HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCC----eEEecCCCCHH
Confidence 46677777664431 124678888888532 33445553 69999999999
Q ss_pred HHHHHHhh
Q 009415 259 DLRQIFMR 266 (535)
Q Consensus 259 el~~IL~~ 266 (535)
++.+|+..
T Consensus 666 ~~~~i~~~ 673 (758)
T 3pxi_A 666 HLTEIVSL 673 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
No 60
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.88 E-value=9.4e-09 Score=116.08 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=87.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
..+++|||||||||+++++++.+++.++++|+|.+..+. ...+-...++.+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk-----------------------------~~gese~~lr~l 289 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-----------------------------LAGESESNLRKA 289 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS-----------------------------CTTHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc-----------------------------cchHHHHHHHHH
Confidence 359999999999999999999999999999998654221 111112233334
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccc-cC-C----CChHHHHHcccccc-CCCcEEEEEEeCCC
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREW-DK-S----SSILPFLFGLSDIL-KMPEVGMIFISSTS 234 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~-d~-~----~~lL~~L~rL~E~~-~~~~l~vI~Is~~~ 234 (535)
++. .+ ...+.||+|||+|.|... +. . ..++..|+.+.+-. ...++.||..+|.+
T Consensus 290 F~~----A~---------------~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~ 350 (806)
T 3cf2_A 290 FEE----AE---------------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHH----HT---------------TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred HHH----HH---------------HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence 432 11 235789999999999531 10 0 23455555443221 12357777777765
Q ss_pred --ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 235 --PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 235 --~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.+.-+.+.|-+. ..|+|+.++.++-.+||....
T Consensus 351 d~LD~ALrR~GRFd-~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 351 NSIDPALRRFGRFD-REVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTSCTTTTSTTSSC-EEEECCCCCHHHHHHHHHHTC
T ss_pred hhcCHHHhCCcccc-eEEecCCCCHHHHHHHHHHHh
Confidence 222233444332 589999999999999997654
No 61
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=2.5e-08 Score=102.07 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=98.3
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC-----CeEEEeccccCCHHH
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR-----PFVYTSCLSCYSPRI 122 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~-----~~~yVnc~~~~s~r~ 122 (535)
-+|..++ .+.|.+..+..|...+... ..++++++||+|||||++++.+++.+.. .+..+|+....
T Consensus 19 ~rp~~~~----~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~---- 88 (340)
T 1sxj_C 19 YRPETLD----EVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR---- 88 (340)
T ss_dssp TCCSSGG----GCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----
T ss_pred hCCCcHH----HhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----
Confidence 3555555 4567788888888887763 4466999999999999999999998631 23344432211
Q ss_pred HHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccc
Q 009415 123 LFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVRE 202 (535)
Q Consensus 123 l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~ 202 (535)
... .+++.+..+.+.. ....+..-|+||||+|.+..
T Consensus 89 ---------------------------~~~----~ir~~i~~~~~~~-------------~~~~~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 89 ---------------------------GID----VVRNQIKDFASTR-------------QIFSKGFKLIILDEADAMTN 124 (340)
T ss_dssp ---------------------------SHH----HHHTHHHHHHHBC-------------CSSSCSCEEEEETTGGGSCH
T ss_pred ---------------------------cHH----HHHHHHHHHHhhc-------------ccCCCCceEEEEeCCCCCCH
Confidence 111 1222232221100 00112357888999999853
Q ss_pred ccCCCChHHHHHccccccCCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 203 WDKSSSILPFLFGLSDILKMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 203 ~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
....+|+++.|..+ .+..+|++++.. .+.+.+|+ ..+.|++++.+++.++|...
T Consensus 125 -----~~~~~L~~~le~~~-~~~~~il~~n~~~~i~~~i~sR~-----~~~~~~~l~~~~~~~~l~~~ 181 (340)
T 1sxj_C 125 -----AAQNALRRVIERYT-KNTRFCVLANYAHKLTPALLSQC-----TRFRFQPLPQEAIERRIANV 181 (340)
T ss_dssp -----HHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHTTS-----EEEECCCCCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCC-CCeEEEEEecCccccchhHHhhc-----eeEeccCCCHHHHHHHHHHH
Confidence 34566777666643 467888888764 22233443 58999999999999998753
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.87 E-value=3.5e-09 Score=104.39 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=80.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVRE 160 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~ 160 (535)
+.+++|+||||||||++++++.+.++.++++++|....+. ..|.+ ...+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~------------------~~~~~----~~~~~~------- 94 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM------------------FVGLG----ASRVRD------- 94 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS------------------CSSSC----SSSSST-------
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh------------------hcchH----HHHHHH-------
Confidence 4469999999999999999999999999999998654321 01110 011111
Q ss_pred HHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc----------CCCChHHHHHccccccC--CCcEEEE
Q 009415 161 ALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD----------KSSSILPFLFGLSDILK--MPEVGMI 228 (535)
Q Consensus 161 ~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d----------~~~~lL~~L~rL~E~~~--~~~l~vI 228 (535)
.++... ...+.+|+|||+|.|.... ....++..|+...+... ..++.||
T Consensus 95 ~~~~a~-------------------~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 155 (268)
T 2r62_A 95 LFETAK-------------------KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVL 155 (268)
T ss_dssp THHHHH-------------------HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEE
T ss_pred HHHHHH-------------------hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEE
Confidence 121110 1134688999999985310 01123444443322211 1235566
Q ss_pred EEeCCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 229 FISSTSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 229 ~Is~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
..+|.+. +.+.. .+-+ ...|+|++++.++..+||....
T Consensus 156 ~ttn~~~~ld~~l~r-~~Rf-~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 156 AATNRPEILDPALMR-PGRF-DRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp ECBSCCTTSCGGGGS-SSSS-CCCCBCCCCCTTTHHHHHHHHT
T ss_pred EecCCchhcCHhHcC-CCCC-CeEEEecCcCHHHHHHHHHHHH
Confidence 6666541 23333 2211 2478999999999999997543
No 63
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.86 E-value=6.1e-10 Score=99.80 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=45.8
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
.+.|++.++.++...+........+++|+|+||||||++++++.+... +++++||..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~ 61 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVE 61 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhh
Confidence 467888888888888765434456899999999999999999998887 899999864
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.84 E-value=1e-09 Score=105.37 Aligned_cols=169 Identities=15% Similarity=0.143 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccccccCC
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNG 141 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g 141 (535)
..+..|..++... ...+++|+||+|||||++++.+.+.+. ..+.|++|.+....
T Consensus 38 ~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--------------------- 94 (242)
T 3bos_A 38 ELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--------------------- 94 (242)
T ss_dssp HHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS---------------------
T ss_pred HHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH---------------------
Confidence 4555666655432 356799999999999999999998764 77889998553210
Q ss_pred CCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-CCChHHHHHcccccc
Q 009415 142 YSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-SSSILPFLFGLSDIL 220 (535)
Q Consensus 142 ~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~~~lL~~L~rL~E~~ 220 (535)
+.+ .+. . ...+.+|||||+|.+..... ...++..+-.+.+.
T Consensus 95 ---------~~~-------~~~----~-----------------~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~- 136 (242)
T 3bos_A 95 ---------STA-------LLE----G-----------------LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ- 136 (242)
T ss_dssp ---------CGG-------GGT----T-----------------GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-
T ss_pred ---------HHH-------HHH----h-----------------ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-
Confidence 000 010 0 01345888999999853100 11223333222332
Q ss_pred CCCcEEEEEEeCCCcccc-------ccCCCCCCCeeEecCCCCHHHHHHHHhhcCCCh--hhhhHHHHhhhhcccc-ccc
Q 009415 221 KMPEVGMIFISSTSPDTY-------HSNTGYVAPIHVYFPECTEDDLRQIFMRNQANQ--KLYSSFLDIVLRPFCR-ITK 290 (535)
Q Consensus 221 ~~~~l~vI~Is~~~~~~f-------~~~~g~~~p~~I~FppYt~~el~~IL~~~~~~~--~l~~~f~~~vl~~~~~-~~r 290 (535)
..+.+|++++..+..+ .++.. ....|.|++++.+++.+|+....... .+-+..+ +.+.. ..+
T Consensus 137 --~~~~ii~~~~~~~~~~~~~~~~l~~r~~--~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~l~~~~~g 208 (242)
T 3bos_A 137 --KRGSLIVSASASPMEAGFVLPDLVSRMH--WGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVG----RFLLNRMAR 208 (242)
T ss_dssp --CSCEEEEEESSCTTTTTCCCHHHHHHHH--HSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHH----HHHHHHTTT
T ss_pred --CCCeEEEEcCCCHHHHHHhhhhhhhHhh--cCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHccC
Confidence 2235787887654322 22221 11589999999999999997543111 1111222 22222 234
Q ss_pred cHHHHHHHHHHh
Q 009415 291 RVDELSTAFSLL 302 (535)
Q Consensus 291 dl~eL~~~~~~L 302 (535)
|+.++..++..+
T Consensus 209 ~~r~l~~~l~~~ 220 (242)
T 3bos_A 209 DLRTLFDVLDRL 220 (242)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 677777666655
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.81 E-value=8.4e-09 Score=118.51 Aligned_cols=164 Identities=16% Similarity=0.264 Sum_probs=101.2
Q ss_pred HhhcCCChHHHHHHHHHHHhccC----C---CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHH
Q 009415 56 LLSRFPGRRVQILELLRLLGTLN----S---SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 56 l~~~~p~Re~qi~~L~~ll~~~~----~---~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~ 125 (535)
+.+.+.|.+..+..|...+.... . +..+++|+||+|||||++++++.+.+ +.++++|||.++.... .
T Consensus 556 l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~-~-- 632 (854)
T 1qvr_A 556 LHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH-A-- 632 (854)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSG-G--
T ss_pred HhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchh-H--
Confidence 45678999999999988886531 1 12369999999999999999999998 6789999998765431 0
Q ss_pred HHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC
Q 009415 126 SILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK 205 (535)
Q Consensus 126 ~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~ 205 (535)
...+.+..+ ...|+. . ... +...+ . ....-||+|||+|.+.
T Consensus 633 --~s~l~g~~~-~~~G~~---~---~g~----l~~~~----~------------------~~~~~vl~lDEi~~l~---- 673 (854)
T 1qvr_A 633 --VSRLIGAPP-GYVGYE---E---GGQ----LTEAV----R------------------RRPYSVILFDEIEKAH---- 673 (854)
T ss_dssp --GGGC---------------------C----HHHHH----H------------------HCSSEEEEESSGGGSC----
T ss_pred --HHHHcCCCC-CCcCcc---c---cch----HHHHH----H------------------hCCCeEEEEecccccC----
Confidence 011111100 001110 0 001 11111 1 0123588999999884
Q ss_pred CCChHHHHHcccccc----------CCCcEEEEEEeCCCc-----------------------------cccccCCCCCC
Q 009415 206 SSSILPFLFGLSDIL----------KMPEVGMIFISSTSP-----------------------------DTYHSNTGYVA 246 (535)
Q Consensus 206 ~~~lL~~L~rL~E~~----------~~~~l~vI~Is~~~~-----------------------------~~f~~~~g~~~ 246 (535)
.+++..|+++-+.- ...++.+|+.||..+ +.|+.|+.
T Consensus 674 -~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~--- 749 (854)
T 1qvr_A 674 -PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD--- 749 (854)
T ss_dssp -HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCS---
T ss_pred -HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcC---
Confidence 46677777665421 123566888888631 12333443
Q ss_pred CeeEecCCCCHHHHHHHHhh
Q 009415 247 PIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 247 p~~I~FppYt~~el~~IL~~ 266 (535)
..+.|+|++++++..|+..
T Consensus 750 -~~i~~~pl~~edi~~i~~~ 768 (854)
T 1qvr_A 750 -EIVVFRPLTKEQIRQIVEI 768 (854)
T ss_dssp -BCCBCCCCCHHHHHHHHHH
T ss_pred -eEEeCCCCCHHHHHHHHHH
Confidence 5788999999999999873
No 66
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.79 E-value=7.9e-09 Score=92.66 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=47.9
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCY 118 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~ 118 (535)
.+.|++.++.++...+........+++|+|+||||||++++++.+.. +.+++ +||....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 57789999999998886654456689999999999999999999876 56888 9997643
No 67
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.77 E-value=6.4e-09 Score=105.90 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=53.4
Q ss_pred HHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHH
Q 009415 55 DLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR 121 (535)
Q Consensus 55 ~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r 121 (535)
.+...+.|++..+..+...+.. ..+++++||||||||++++.+.+.++.++.+++|....++.
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~----~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT----GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH----TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHH
T ss_pred HhccceeCcHHHHHHHHHHHHc----CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChh
Confidence 4556899999999998888765 35899999999999999999999999999999986555443
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.73 E-value=2.5e-08 Score=106.85 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=85.6
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.||+.++..+...+.. ...++++|+||||||||++++.+.+.+ +.+++.++|..
T Consensus 181 ~iiGr~~~i~~l~~~l~r--~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------------ 246 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------ 246 (468)
T ss_dssp CCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CccCcHHHHHHHHHHHhc--cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc------------
Confidence 689999999999999865 234579999999999999999999986 56677777750
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCC
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS 208 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~ 208 (535)
...+ +|...++.+++.+. .....||+|| .. .+
T Consensus 247 -~~~g-------------------~~e~~~~~~~~~~~-------------------~~~~~iLfiD-----~~----~~ 278 (468)
T 3pxg_A 247 -KYRG-------------------EFEDRLKKVMDEIR-------------------QAGNIILFID-----AA----ID 278 (468)
T ss_dssp --------------------------CTTHHHHHHHHH-------------------TCCCCEEEEC-----C-------
T ss_pred -cccc-------------------hHHHHHHHHHHHHH-------------------hcCCeEEEEe-----Cc----hh
Confidence 0000 11112333443321 1245788899 22 22
Q ss_pred hHHHHHccccccCCCcEEEEEEeCCCc--------cccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 209 ILPFLFGLSDILKMPEVGMIFISSTSP--------DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 209 lL~~L~rL~E~~~~~~l~vI~Is~~~~--------~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
....|.+.-+- .++.+|..++... +.+.+|. ..|.|++++.+++.+||....
T Consensus 279 a~~~L~~~L~~---g~v~vI~at~~~e~~~~~~~~~al~~Rf-----~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 279 ASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALERRF-----QPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp -----CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHHHSE-----EEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHhhcC---CCEEEEecCCHHHHHHHhhcCHHHHHhC-----ccceeCCCCHHHHHHHHHHHH
Confidence 22333333232 3577777776542 1233333 479999999999999998543
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.71 E-value=2.2e-07 Score=95.02 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=47.6
Q ss_pred CCCCCHHHHhhcCCChHHHHHHHHHHHhcc---CCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 48 QEPISLDDLLSRFPGRRVQILELLRLLGTL---NSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 48 ~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~---~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.+|..++ .+.|++..+..|...+... ..+..+++|+|||||||||+++.++..++..+.++++
T Consensus 19 lr~~~l~----~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg 84 (334)
T 1in4_A 19 LRPKSLD----EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84 (334)
T ss_dssp TSCSSGG----GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred cCCccHH----HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEec
Confidence 3454444 5667788888887777543 2344679999999999999999999999877766654
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.69 E-value=1.3e-07 Score=92.39 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
.++|+||+|||||++++.++..++..+++++|.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 499999999999999999999999889998874
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.69 E-value=1e-07 Score=108.02 Aligned_cols=153 Identities=13% Similarity=0.101 Sum_probs=93.0
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC----------CCeEEEeccccCCHHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS----------RPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~----------~~~~yVnc~~~~s~r~l~~~I 127 (535)
+.+.||+.++..+...+... ...+++|+|+||||||++++.+.+.+. ..+..+++....
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~--------- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL--------- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh---------
Confidence 36899999999999988753 445799999999999999999998762 223333332211
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC--
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-- 205 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-- 205 (535)
.|. ....+|...++.+++.+ + .....+|+|||+|.|.....
T Consensus 255 ------------~~~------~~~g~~e~~l~~~~~~~----~---------------~~~~~iL~IDEi~~l~~~~~~~ 297 (758)
T 1r6b_X 255 ------------AGT------KYRGDFEKRFKALLKQL----E---------------QDTNSILFIDEIHTIIGAGAAS 297 (758)
T ss_dssp ------------CCC------CCSSCHHHHHHHHHHHH----S---------------SSSCEEEEETTTTTTTTSCCSS
T ss_pred ------------ccc------cccchHHHHHHHHHHHH----H---------------hcCCeEEEEechHHHhhcCCCC
Confidence 000 01123344444444432 1 12357899999999942111
Q ss_pred --CCChHHHHHccccccCCCcEEEEEEeCCCc--------cccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 206 --SSSILPFLFGLSDILKMPEVGMIFISSTSP--------DTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 206 --~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~--------~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
..++...|..+.+ ..++.+|+.++... +.+.++. ..|.|++++.++..+||..
T Consensus 298 ~~~~~~~~~L~~~l~---~~~~~~I~at~~~~~~~~~~~d~aL~~Rf-----~~i~v~~p~~~e~~~il~~ 360 (758)
T 1r6b_X 298 GGQVDAANLIKPLLS---SGKIRVIGSTTYQEFSNIFEKDRALARRF-----QKIDITEPSIEETVQIING 360 (758)
T ss_dssp SCHHHHHHHHSSCSS---SCCCEEEEEECHHHHHCCCCCTTSSGGGE-----EEEECCCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHh---CCCeEEEEEeCchHHhhhhhcCHHHHhCc-----eEEEcCCCCHHHHHHHHHH
Confidence 1122333333333 24577777776431 1232222 4799999999999999974
No 72
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.63 E-value=2e-07 Score=106.22 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=100.3
Q ss_pred cCCChHHHHHHHHHHHhc-----------cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGT-----------LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~-----------~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.+.|.+.++.+|...+.. ...++.+++|+||||||||++++++...++..+++|||.+..+.
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~------- 277 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK------- 277 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS-------
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh-------
Confidence 577888888888777653 11234469999999999999999999999999999998543210
Q ss_pred HHHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC-C
Q 009415 128 LNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK-S 206 (535)
Q Consensus 128 l~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~-~ 206 (535)
...++...+..+++.... ..+.++++||+|.+..... .
T Consensus 278 ----------------------~~g~~~~~l~~vf~~a~~-------------------~~p~il~iDEid~l~~~~~~~ 316 (806)
T 1ypw_A 278 ----------------------LAGESESNLRKAFEEAEK-------------------NAPAIIFIDELDAIAPKREKT 316 (806)
T ss_dssp ----------------------STTHHHHHHHHHHHHHHH-------------------HCSEEEEEESGGGTSCTTSCC
T ss_pred ----------------------hhhhHHHHHHHHHHHHHh-------------------cCCcEEEeccHHHhhhccccc
Confidence 111222233334433211 1457899999998863210 0
Q ss_pred -----CChHHHHHcccccc-CCCcEEEEEEeCCC--ccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 207 -----SSILPFLFGLSDIL-KMPEVGMIFISSTS--PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 207 -----~~lL~~L~rL~E~~-~~~~l~vI~Is~~~--~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
..++..|+.+.+-. ...++.+|+.++.+ .+..+.+.+-+ ...+.|+.++.++-.+||....
T Consensus 317 ~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf-~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF-DREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSS-CEEECCCCCCHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccccc-ccccccCCCCHHHHHHHHHHHH
Confidence 12444555543322 12356677677664 22222233322 2578999999999999997543
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.63 E-value=6.3e-08 Score=105.65 Aligned_cols=166 Identities=16% Similarity=0.118 Sum_probs=89.4
Q ss_pred HhhcCCChHHHHHHHHHHHhc----cCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 56 LLSRFPGRRVQILELLRLLGT----LNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 56 l~~~~p~Re~qi~~L~~ll~~----~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
+.+.+.|=++....+...+.- ...++++++|+||||||||++++.+...++.++..|+|........++...- .
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~-~- 156 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRR-T- 156 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHH-H-
Confidence 334566666655555443321 1124557999999999999999999999999999999876433221111100 0
Q ss_pred hhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHH
Q 009415 132 LLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILP 211 (535)
Q Consensus 132 ~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~ 211 (535)
++......+...+... ....+ +|+|||+|.+... ...+...
T Consensus 157 ----------------------~ig~~~~~~~~~~~~a---------------~~~~~-vl~lDEid~l~~~-~~~~~~~ 197 (543)
T 3m6a_A 157 ----------------------YVGAMPGRIIQGMKKA---------------GKLNP-VFLLDEIDKMSSD-FRGDPSS 197 (543)
T ss_dssp -----------------------------CHHHHHHTT---------------CSSSE-EEEEEESSSCC----------
T ss_pred ----------------------HhccCchHHHHHHHHh---------------hccCC-EEEEhhhhhhhhh-hccCHHH
Confidence 0000111111111110 11233 8889999999631 1112333
Q ss_pred HHHcccccc--------------CCCcEEEEEEeCCC---ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 212 FLFGLSDIL--------------KMPEVGMIFISSTS---PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 212 ~L~rL~E~~--------------~~~~l~vI~Is~~~---~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.|+++-+-. ...++.+|+.+|.. ++.+++|. ..|.|++|+.++..+|+...
T Consensus 198 ~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~-----~vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 198 AMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM-----EIINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE-----EEEECCCCCHHHHHHHHHHT
T ss_pred HHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhc-----ceeeeCCCCHHHHHHHHHHH
Confidence 333332210 01356677677664 44566655 47899999999999999864
No 74
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.63 E-value=3.5e-07 Score=98.44 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.++|+||||||||++++++...++.++++++|.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~ 100 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 100 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence 49999999999999999999999999999998654
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.61 E-value=1.8e-07 Score=92.91 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
.++|+||+|||||++++.+...++..+++++|.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~ 107 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGS 107 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecHH
Confidence 499999999999999999999999899999874
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.58 E-value=1e-07 Score=108.01 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=85.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc----------CCCeEEEeccccCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL----------SRPFVYTSCLSCYSPRILFESIL 128 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l----------~~~~~yVnc~~~~s~r~l~~~Il 128 (535)
.+.||+.+++++...+.. ...++++++||||||||++++.+.+.+ +..++.++| .+
T Consensus 181 ~iiG~~~~i~~l~~~l~~--~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~--------- 246 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GT--------- 246 (758)
T ss_dssp CCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CccCchHHHHHHHHHHhC--CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cc---------
Confidence 689999999999999865 234579999999999999999999987 455556665 00
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCC
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS 208 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~ 208 (535)
.. ++ +|...++.+++.+. ...+.||+|| .. .+
T Consensus 247 -~~---------------~G----~~e~~l~~~~~~~~-------------------~~~~~iLfiD-----~~----~~ 278 (758)
T 3pxi_A 247 -KY---------------RG----EFEDRLKKVMDEIR-------------------QAGNIILFID-----AA----ID 278 (758)
T ss_dssp --------------------------CTTHHHHHHHHH-------------------TCCCCEEEEC-----C-------
T ss_pred -cc---------------cc----hHHHHHHHHHHHHH-------------------hcCCEEEEEc-----Cc----hh
Confidence 00 00 11122344444321 1245788899 11 22
Q ss_pred hHHHHHccccccCCCcEEEEEEeCCCc--------cccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 209 ILPFLFGLSDILKMPEVGMIFISSTSP--------DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 209 lL~~L~rL~E~~~~~~l~vI~Is~~~~--------~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
....|.++-+- .++.+|+.++... +.+.+|. ..|.|++++.+++.+||...
T Consensus 279 ~~~~L~~~l~~---~~v~~I~at~~~~~~~~~~~d~al~rRf-----~~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 279 ASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALERRF-----QPIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp -----CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHHHSE-----EEEECCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---CCEEEEeCCChHHHHHHhhccHHHHhhC-----cEEEeCCCCHHHHHHHHHHH
Confidence 23333333332 3577887776543 1233333 47999999999999999854
No 77
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=1.2e-07 Score=95.82 Aligned_cols=143 Identities=6% Similarity=-0.016 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc------CCCeEEEeccccCCHHHHHHHHHHHHhhcccc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL------SRPFVYTSCLSCYSPRILFESILNQLLLHKKN 137 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l------~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~ 137 (535)
++.+..|...+.... .+.+++|||+|+|||++++.+++.. ...+.+++...
T Consensus 3 ~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------- 59 (305)
T 2gno_A 3 KDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------- 59 (305)
T ss_dssp -CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---------------------
T ss_pred HHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---------------------
Confidence 345667777776642 5578899999999999999998852 12233333210
Q ss_pred ccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHccc
Q 009415 138 AFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGLS 217 (535)
Q Consensus 138 ~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~ 217 (535)
....+. .++++++.+ .. ....++.-|+||||+|.+.. .-..+|++.-
T Consensus 60 ---------~~~~id----~ir~li~~~-~~--------------~p~~~~~kvviIdead~lt~-----~a~naLLk~L 106 (305)
T 2gno_A 60 ---------ENIGID----DIRTIKDFL-NY--------------SPELYTRKYVIVHDCERMTQ-----QAANAFLKAL 106 (305)
T ss_dssp ---------SCBCHH----HHHHHHHHH-TS--------------CCSSSSSEEEEETTGGGBCH-----HHHHHTHHHH
T ss_pred ---------CCCCHH----HHHHHHHHH-hh--------------ccccCCceEEEeccHHHhCH-----HHHHHHHHHH
Confidence 001222 233444322 10 01123456888999999953 3356677766
Q ss_pred cccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 218 DILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 218 E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
|..+ ++..+|++++.+ .++++...++ .+.|++.+.+|+.++|...
T Consensus 107 Eep~-~~t~fIl~t~~~-~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 107 EEPP-EYAVIVLNTRRW-HYLLPTIKSR---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp HSCC-TTEEEEEEESCG-GGSCHHHHTT---SEEEECCCCHHHHHHHHHH
T ss_pred hCCC-CCeEEEEEECCh-HhChHHHHce---eEeCCCCCHHHHHHHHHHH
Confidence 7643 578899988764 4554433333 7999999999999999865
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.57 E-value=1.7e-07 Score=100.91 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=97.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEeccccCCHHHHHHHHHHH
Q 009415 53 LDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSCYSPRILFESILNQ 130 (535)
Q Consensus 53 ~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~~s~r~l~~~Il~~ 130 (535)
.+.+...+.|++..++.+...+.. ..+++|+||||||||++++++...++ .++.+++|.- .++..++
T Consensus 17 ~~~l~~~ivGq~~~i~~l~~al~~----~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~------ 85 (500)
T 3nbx_X 17 SSSLEKGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVF------ 85 (500)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHHHH----TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHH------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc----CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhc------
Confidence 345677899999999998887765 46899999999999999999999885 4667888763 3553322
Q ss_pred HhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChH
Q 009415 131 LLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSIL 210 (535)
Q Consensus 131 L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL 210 (535)
+.. .+.. ... ...+ ... .. +. -...-||+|||++++. +.+.
T Consensus 86 --G~~----~~~~-------~~~-----~g~~----~~~-------~~----g~-l~~~~IL~IDEI~r~~-----~~~q 126 (500)
T 3nbx_X 86 --GPL----SIQA-------LKD-----EGRY----ERL-------TS----GY-LPEAEIVFLDEIWKAG-----PAIL 126 (500)
T ss_dssp --CCB----C--------------------------CBC-------CT----TS-GGGCSEEEEESGGGCC-----HHHH
T ss_pred --Ccc----cHHH-------Hhh-----chhH----Hhh-------hc----cC-CCcceeeeHHhHhhhc-----HHHH
Confidence 210 0000 000 0000 000 00 00 0023488999999874 3444
Q ss_pred HHHHccccc---------cCCCcEEEEEEeCCCcc------ccccCCCCCCCeeEecCCCCH-HHHHHHHhhc
Q 009415 211 PFLFGLSDI---------LKMPEVGMIFISSTSPD------TYHSNTGYVAPIHVYFPECTE-DDLRQIFMRN 267 (535)
Q Consensus 211 ~~L~rL~E~---------~~~~~l~vI~Is~~~~~------~f~~~~g~~~p~~I~FppYt~-~el~~IL~~~ 267 (535)
..|+.+.+. ...+.-.+|+.+|..++ .++.|.. ..|++++.+. ++...||...
T Consensus 127 ~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~----~~i~v~~p~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 127 NTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRML----IRLWLDKVQDKANFRSMLTSQ 195 (500)
T ss_dssp HHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCC----EEEECCSCCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHH----HHHHHHHhhhhhhHHHHHhcc
Confidence 445443321 11222234666776666 5666653 5788888886 6788898764
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.51 E-value=1.4e-07 Score=106.60 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=78.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREA 161 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~ 161 (535)
..+++|||||||||.++++++.+++.+++.|++.+..+. .- +++- ..++++
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~------------------~v-------Gese----~~vr~l 562 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM------------------WF-------GESE----ANVREI 562 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT------------------TC-------SSCH----HHHHHH
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc------------------cc-------chHH----HHHHHH
Confidence 359999999999999999999999999988876443211 01 1121 123334
Q ss_pred HHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc---------CCCChHHHHHcccc-ccCCCcEEEEEEe
Q 009415 162 LINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD---------KSSSILPFLFGLSD-ILKMPEVGMIFIS 231 (535)
Q Consensus 162 l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d---------~~~~lL~~L~rL~E-~~~~~~l~vI~Is 231 (535)
++ ..+ ...+.||+|||+|.|.... ....++..|+...+ +....++-||..+
T Consensus 563 F~----~Ar---------------~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT 623 (806)
T 3cf2_A 563 FD----KAR---------------QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623 (806)
T ss_dssp HH----HHH---------------TTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-
T ss_pred HH----HHH---------------HcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeC
Confidence 43 221 2357899999999995210 11235555554322 2222345555566
Q ss_pred CCCc---cccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 232 STSP---DTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 232 ~~~~---~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
|.++ +.++ |.|-+. ..|+|+.++.++-.+||....
T Consensus 624 N~p~~lD~All-RpgRfd-~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 624 NRPDIIDPAIL-RPGRLD-QLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CCSSSSCHHHH-STTTSC-CEEEC-----CHHHHTTTTTS
T ss_pred CCchhCCHhHc-CCCcce-EEEEECCcCHHHHHHHHHHHh
Confidence 6652 1232 444222 589999999999999987543
No 80
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.49 E-value=2e-07 Score=87.71 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhccCC--CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009415 65 VQILELLRLLGTLNS--SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~--~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~ 115 (535)
..+..+..++..... ...+++|+|++|||||+++++++..+ +.+++|++|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 344455555544221 12579999999999999999999887 5778888874
No 81
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.42 E-value=3e-06 Score=84.20 Aligned_cols=136 Identities=14% Similarity=0.119 Sum_probs=77.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREAL 162 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l 162 (535)
.+.|+||||||||++++.++..++..++++++.+..+. ...+....+..++
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~-----------------------------~~~~~~~~i~~vf 96 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-----------------------------YVGESERAVRQVF 96 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS-----------------------------TTHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh-----------------------------hhhHHHHHHHHHH
Confidence 49999999999999999999999988899987654321 0111111122222
Q ss_pred HHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc------CCCChHHHHHc-cccccCCCcEEEEEEeCCC-
Q 009415 163 INVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD------KSSSILPFLFG-LSDILKMPEVGMIFISSTS- 234 (535)
Q Consensus 163 ~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d------~~~~lL~~L~r-L~E~~~~~~l~vI~Is~~~- 234 (535)
+.. + ...+.++++||+|.+.... ....++..++. |........+-++..+|.+
T Consensus 97 ~~a----~---------------~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 97 QRA----K---------------NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPD 157 (274)
T ss_dssp HHH----H---------------HTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGG
T ss_pred HHH----H---------------hcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChh
Confidence 211 0 1135788999999874211 01223333322 1111111234444566664
Q ss_pred -ccccccCCCCCCCeeEecCCCCHHHHHHHHhhc
Q 009415 235 -PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRN 267 (535)
Q Consensus 235 -~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~ 267 (535)
.+.-+.+.|-+. ..|+|+..+.++-.+||...
T Consensus 158 ~LD~al~r~gRfd-~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 158 IIDPAILRPGRLD-KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp GSCHHHHSTTSSC-EEEECCSCCHHHHHHHHHHH
T ss_pred hCCHhhcCcccCC-eEEEeCCcCHHHHHHHHHHH
Confidence 122222333222 68999999999999998743
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.42 E-value=5.5e-07 Score=83.18 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhccC-CCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEecc
Q 009415 63 RRVQILELLRLLGTLN-SSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCL 115 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~-~~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~ 115 (535)
++..+..+..++.... ..+..++|+||+|||||++++.++..+ +..++|+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3445555555555432 234579999999999999999999876 5666777653
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.41 E-value=2.4e-08 Score=113.78 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVR 159 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~ 159 (535)
++..++++||||||||+++++++..++..+++|+|.+..+.. -| +... .++
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~------------------~g-------~~~~----~i~ 560 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW------------------FG-------ESEA----NVR 560 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC------------------TT-------TSSH----HHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh------------------cC-------ccHH----HHH
Confidence 345699999999999999999999999999999987654220 00 1111 122
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccC---------CCChHHHHHccccc-cCCCcEEEEE
Q 009415 160 EALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDK---------SSSILPFLFGLSDI-LKMPEVGMIF 229 (535)
Q Consensus 160 ~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~---------~~~lL~~L~rL~E~-~~~~~l~vI~ 229 (535)
.+++..-. ..+.||+|||+|.+..... ...++..|+...+- ....++.||+
T Consensus 561 ~~f~~a~~-------------------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~ 621 (806)
T 1ypw_A 561 EIFDKARQ-------------------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp HHHHHHHH-------------------HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCC
T ss_pred HHHHHHHh-------------------cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEE
Confidence 33332111 1346889999999842110 12355666554332 2223455566
Q ss_pred EeCCC---cccccc--CCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 230 ISSTS---PDTYHS--NTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 230 Is~~~---~~~f~~--~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.+|.+ ++.++. |.. ..|+|+.|+.++..+||....
T Consensus 622 tTN~~~~ld~allrpgRf~----~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 622 ATNRPDIIDPAILRPGRLD----QLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CCBSCGGGSCTTSSGGGTT----SCCCCCCCCCSHHHHHTTTTT
T ss_pred ecCCcccCCHHHhCccccC----ceeecCCCCHHHHHHHHHHHh
Confidence 66654 223333 332 589999999999999998654
No 84
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.37 E-value=5.5e-06 Score=90.30 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=101.1
Q ss_pred CChHHHHHHHHHHHhccCC-CCCCeEEECCCCCCHHHHHHHHHH----hcCC---CeEEEeccccC--CHHHHHHHHHHH
Q 009415 61 PGRRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFR----HLSR---PFVYTSCLSCY--SPRILFESILNQ 130 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GTGKTs~v~~vl~----~l~~---~~~yVnc~~~~--s~r~l~~~Il~~ 130 (535)
+||+.++.+|...|..... ....+.|+|+.|.|||++++.+.+ ...- ..++|+..+.. +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 3999999999999966422 234588999999999999999996 3331 34677665553 678899999999
Q ss_pred HhhccccccCCCCCCcCCC--ChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCc-EEEEEEeCCcccccccCCC
Q 009415 131 LLLHKKNAFNGYSSAKRCE--KPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGK-MIYLIFDNFELVREWDKSS 207 (535)
Q Consensus 131 L~~~~~~~~~g~~~~~r~~--~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~-~~vlVLDe~d~L~~~d~~~ 207 (535)
+...... .. ....+ ...+....|.+.+ .++ +++||||+++....+
T Consensus 211 l~~~~~~--~~---~~~~~~~~~~~l~~~l~~~L-----------------------~~~kr~LlVLDdv~~~~~~---- 258 (549)
T 2a5y_B 211 LKSEDDL--LN---FPSVEHVTSVVLKRMICNAL-----------------------IDRPNTLFVFDDVVQEETI---- 258 (549)
T ss_dssp HTTTSCC--TT---CCCCTTCCHHHHHHHHHHHH-----------------------TTSTTEEEEEEEECCHHHH----
T ss_pred HhcCccc--cc---ccccccccHHHHHHHHHHHH-----------------------cCCCcEEEEEECCCCchhh----
Confidence 9753110 00 00111 1222222222221 223 789999999875321
Q ss_pred ChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCCCCHHHHHHHHhhcC
Q 009415 208 SILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPECTEDDLRQIFMRNQ 268 (535)
Q Consensus 208 ~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~~~ 268 (535)
.+. .. ++.+||++|... ......+. ....+..++.+.+|..+++....
T Consensus 259 -~~~------~~---~gs~ilvTTR~~--~v~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 259 -RWA------QE---LRLRCLVTTRDV--EISNAASQ-TCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp -HHH------HH---TTCEEEEEESBG--GGGGGCCS-CEEEEECCCCCHHHHHHHHHHTS
T ss_pred -ccc------cc---CCCEEEEEcCCH--HHHHHcCC-CCeEEECCCCCHHHHHHHHHHHh
Confidence 121 11 356777777653 22222221 11468899999999999998764
No 85
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.35 E-value=9.2e-06 Score=88.96 Aligned_cols=164 Identities=13% Similarity=0.047 Sum_probs=95.3
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc-------CCCeEEEeccccCCHHHHHHHHHH-
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL-------SRPFVYTSCLSCYSPRILFESILN- 129 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l-------~~~~~yVnc~~~~s~r~l~~~Il~- 129 (535)
..|.||+.++.+|...+....+....+.|+|++|+|||+++..+++.. .-..+++++... ....++..+..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 469999999999999997532334468899999999999999997542 124677776554 34444554433
Q ss_pred --HHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCC
Q 009415 130 --QLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSS 207 (535)
Q Consensus 130 --~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~ 207 (535)
.+... +................|...+.. ..++++||||+++...
T Consensus 203 ~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~~---------------------~~~~~LLVLDdv~~~~------ 249 (591)
T 1z6t_A 203 CTRLDQD------ESFSQRLPLNIEEAKDRLRILMLR---------------------KHPRSLLILDDVWDSW------ 249 (591)
T ss_dssp HHHHCSS------CCSCSSCCCSHHHHHHHHHHHHHH---------------------TCTTCEEEEEEECCHH------
T ss_pred HHHhccc------cccccCCCCCHHHHHHHHHHHHcc---------------------CCCCeEEEEeCCCCHH------
Confidence 33210 000011223344433333333321 2246899999997532
Q ss_pred ChHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEec-CCCCHHHHHHHHhhc
Q 009415 208 SILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYF-PECTEDDLRQIFMRN 267 (535)
Q Consensus 208 ~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~F-ppYt~~el~~IL~~~ 267 (535)
.+.. + .++..||++|.... .....+ ..+..|.. .+.+.+|..+++...
T Consensus 250 -~l~~------l--~~~~~ilvTsR~~~--~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~ 298 (591)
T 1z6t_A 250 -VLKA------F--DSQCQILLTTRDKS--VTDSVM-GPKYVVPVESSLGKEKGLEILSLF 298 (591)
T ss_dssp -HHHT------T--CSSCEEEEEESCGG--GGTTCC-SCEEEEECCSSCCHHHHHHHHHHH
T ss_pred -HHHH------h--cCCCeEEEECCCcH--HHHhcC-CCceEeecCCCCCHHHHHHHHHHH
Confidence 1211 1 24677777776642 111111 11123332 489999999999754
No 86
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.34 E-value=1.4e-05 Score=84.54 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=49.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcc---------C---CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTL---------N---SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~---------~---~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
+.+-+.+.|-++..+.|...+... . .++.+++++||||||||++++++.+.++.+++.++|...
T Consensus 11 ~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~ 86 (444)
T 1g41_A 11 SELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (444)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhh
Confidence 445567788888877776666321 0 134579999999999999999999999999999998543
No 87
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.28 E-value=3.9e-06 Score=85.35 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=32.1
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+.|.+.....+...... ....+++|+||||||||++++.+.+.++
T Consensus 25 ~i~G~~~~~~~l~~~~~~--~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVD--PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GSCSCHHHHHHHHHHHHC--GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hccChHHHHHHHHHHhhC--CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 355666654443333221 1235699999999999999999999886
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.16 E-value=1e-06 Score=89.14 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhccCC-CCCCeEEECCCCCCHHHHHHHHHHhcC----CCeEEEecc
Q 009415 64 RVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHLS----RPFVYTSCL 115 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~-~~~~l~I~G~~GTGKTs~v~~vl~~l~----~~~~yVnc~ 115 (535)
...+..+..++..... ...+++||||+|||||+++.++...+. .++.|++|.
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 3444445555554211 246799999999999999999997654 778888874
No 89
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.15 E-value=2.3e-05 Score=92.60 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=98.4
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---C----CCeEEEeccccCCH--HHHHHHHH
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---S----RPFVYTSCLSCYSP--RILFESIL 128 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~----~~~~yVnc~~~~s~--r~l~~~Il 128 (535)
..|.||+.++.+|...|.........+.|+|+.|.|||++++.+++.. . -.+.+|+....... ...+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 469999999999999996543334458899999999999999998762 2 23457776553322 33466677
Q ss_pred HHHhhccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCC
Q 009415 129 NQLLLHKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS 208 (535)
Q Consensus 129 ~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~ 208 (535)
..|...... .........+....|+..+ . ..+++++||||+++....++
T Consensus 204 ~~l~~~~~~------~~~~~~~~~~~~~~l~~~l----~-----------------~~~~~~LlvlDd~~~~~~~~---- 252 (1249)
T 3sfz_A 204 MRLDQEESF------SQRLPLNIEEAKDRLRVLM----L-----------------RKHPRSLLILDDVWDPWVLK---- 252 (1249)
T ss_dssp HHHTTTCTT------CSSCCSSHHHHHHHHHHHT----S-----------------SSSCSCEEEEESCCCHHHHT----
T ss_pred HHhhhhccc------ccCCCCCHHHHHHHHHHHH----h-----------------ccCCCEEEEEecCCCHHHHH----
Confidence 776543110 0111223333222222221 1 12347899999998654322
Q ss_pred hHHHHHccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecCC-CCHHHHHHHHhhc
Q 009415 209 ILPFLFGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFPE-CTEDDLRQIFMRN 267 (535)
Q Consensus 209 lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~Fpp-Yt~~el~~IL~~~ 267 (535)
.+ .++.+||+.|... ........ ....+..++ .+.+|..+++...
T Consensus 253 ---------~~--~~~~~ilvTtR~~--~~~~~~~~-~~~~~~~~~~l~~~~a~~l~~~~ 298 (1249)
T 3sfz_A 253 ---------AF--DNQCQILLTTRDK--SVTDSVMG-PKHVVPVESGLGREKGLEILSLF 298 (1249)
T ss_dssp ---------TT--CSSCEEEEEESST--TTTTTCCS-CBCCEECCSSCCHHHHHHHHHHH
T ss_pred ---------hh--cCCCEEEEEcCCH--HHHHhhcC-CceEEEecCCCCHHHHHHHHHHh
Confidence 11 2466777777764 22211111 113566665 9999999998753
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.11 E-value=2.1e-06 Score=77.28 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=31.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
....++|+||+|+|||++++.++..+ +...+|+++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 34579999999999999999999877 566888887543
No 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.11 E-value=1.2e-05 Score=92.25 Aligned_cols=171 Identities=13% Similarity=0.158 Sum_probs=102.2
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc------CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL------SRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l------~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
..||+.++.+|...|... +..+.+.|+|+.|.|||++++.+.+.. ....+++++.+..+...++..|+..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 489999999999998752 234568899999999999999998542 3457888888777888888888877654
Q ss_pred ccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHH
Q 009415 134 HKKNAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFL 213 (535)
Q Consensus 134 ~~~~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L 213 (535)
..+...+.. ........-...+...+...+.. ..+++++||||+++.... +..|
T Consensus 209 i~~~~~~~~---d~~~~ip~~leeL~e~Lr~lL~~----------------l~~KRvLLVLDDVwd~eq-------Le~f 262 (1221)
T 1vt4_I 209 IDPNWTSRS---DHSSNIKLRIHSIQAELRRLLKS----------------KPYENCLLVLLNVQNAKA-------WNAF 262 (1221)
T ss_dssp HCSSSTTTS---CCCSSHHHHHHHHHHHHHHHHHH----------------STTSSCEEEEESCCCHHH-------HHHH
T ss_pred cCccccccc---ccccCCCCCHHHHHHHHHHHHHh----------------hcCCCEEEEEeCcChHHH-------HHhh
Confidence 321100000 00001111111122222222211 134678999999987432 2222
Q ss_pred HccccccCCCcEEEEEEeCCCccccccCCCCCCCeeEecC----CCCHHHHHHHHhhc
Q 009415 214 FGLSDILKMPEVGMIFISSTSPDTYHSNTGYVAPIHVYFP----ECTEDDLRQIFMRN 267 (535)
Q Consensus 214 ~rL~E~~~~~~l~vI~Is~~~~~~f~~~~g~~~p~~I~Fp----pYt~~el~~IL~~~ 267 (535)
. ++..||++|..... ....+...+..+.++ +.+.+|..+++...
T Consensus 263 ---~-----pGSRILVTTRd~~V--a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 263 ---N-----LSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp ---H-----SSCCEEEECSCSHH--HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred ---C-----CCeEEEEeccChHH--HHhcCCCeEEEecCccccCCcCHHHHHHHHHHH
Confidence 1 35677777766521 100110112355555 79999999999765
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.77 E-value=0.00011 Score=92.47 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIFVR 159 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~L~ 159 (535)
..+++++||||||||++++.++..+ +..+..|||....++..+... +.+......
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~-i~~~~~~~~----------------------- 1322 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSA-LHRHTNYVT----------------------- 1322 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHH-HHHHBCCEE-----------------------
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHH-HHHHhhhcc-----------------------
Confidence 4589999999999999998888776 567788898776666433222 222111000
Q ss_pred HHHHHHHHhhhhhhhhccccc-cccccCCcEEEEEEeCCccccccc--CCCChHHHHHccccc---cC--------CCcE
Q 009415 160 EALINVIDSLKENAEKTSTSK-LKGQVNGKMIYLIFDNFELVREWD--KSSSILPFLFGLSDI---LK--------MPEV 225 (535)
Q Consensus 160 ~~l~~~~~~l~~~~~~~s~~k-~~~~~~~~~~vlVLDe~d~L~~~d--~~~~lL~~L~rL~E~---~~--------~~~l 225 (535)
..+|. +.+.+.++..||+|||++... .| +.+..+..|..+-|. .. ..++
T Consensus 1323 ----------------~~~g~~~~P~~~gk~~VlFiDEinmp~-~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i 1385 (2695)
T 4akg_A 1323 ----------------TSKGLTLLPKSDIKNLVLFCDEINLPK-LDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERI 1385 (2695)
T ss_dssp ----------------ETTTEEEEEBSSSSCEEEEEETTTCSC-CCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESE
T ss_pred ----------------ccCCccccCCCCCceEEEEeccccccc-ccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCE
Confidence 00000 001124567899999998753 22 223345544444342 11 1235
Q ss_pred EEEEEeCCC--------ccccccCCCCCCCeeEecCCCCHHHHHHHHhh
Q 009415 226 GMIFISSTS--------PDTYHSNTGYVAPIHVYFPECTEDDLRQIFMR 266 (535)
Q Consensus 226 ~vI~Is~~~--------~~~f~~~~g~~~p~~I~FppYt~~el~~IL~~ 266 (535)
.+|..+|.+ +++|+++. ..|+++.++.+++.+|+..
T Consensus 1386 ~lIaA~Npp~~gGR~~l~~rllRrf-----~vi~i~~P~~~~l~~I~~~ 1429 (2695)
T 4akg_A 1386 HIVGACNPPTDPGRIPMSERFTRHA-----AILYLGYPSGKSLSQIYEI 1429 (2695)
T ss_dssp EEEEEECCTTSTTCCCCCHHHHTTE-----EEEECCCCTTTHHHHHHHH
T ss_pred EEEEecCCCccCCCccCChhhhhee-----eEEEeCCCCHHHHHHHHHH
Confidence 556555543 22444433 5799999999999999864
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.74 E-value=0.00016 Score=74.78 Aligned_cols=160 Identities=23% Similarity=0.342 Sum_probs=91.9
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSCLSCYSPRILFESILNQLLLHKK 136 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~--~~~yVnc~~~~s~r~l~~~Il~~L~~~~~ 136 (535)
.+.|....+.++...+........+++|+|++||||+.+.+.+-...+. .++.|||...... + +.+.|.++.+
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~--~---~~~~lfg~~~ 204 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE--L---AESELFGHEK 204 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT--T---HHHHHHEECS
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH--H---HHHHhcCccc
Confidence 3556666666666655443334557999999999999999988776543 3899999876422 2 2344556544
Q ss_pred cccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcc
Q 009415 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (535)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL 216 (535)
....|.... ... .++. ..+. .|+|||++.|. ..+...|++.
T Consensus 205 g~~tga~~~----~~g--------~~~~--------------------a~~g--tlfldei~~l~-----~~~Q~~Ll~~ 245 (368)
T 3dzd_A 205 GAFTGALTR----KKG--------KLEL--------------------ADQG--TLFLDEVGELD-----QRVQAKLLRV 245 (368)
T ss_dssp CSSSSCCCC----EEC--------HHHH--------------------TTTS--EEEEETGGGSC-----HHHHHHHHHH
T ss_pred cccCCcccc----cCC--------hHhh--------------------cCCC--eEEecChhhCC-----HHHHHHHHHH
Confidence 333332110 110 1111 1223 57899999995 2344444443
Q ss_pred ccc---cC-------CCcEEEEEEeCCCccc----------cccCCCCCCCeeEecCCCCH--HHHHHHHh
Q 009415 217 SDI---LK-------MPEVGMIFISSTSPDT----------YHSNTGYVAPIHVYFPECTE--DDLRQIFM 265 (535)
Q Consensus 217 ~E~---~~-------~~~l~vI~Is~~~~~~----------f~~~~g~~~p~~I~FppYt~--~el~~IL~ 265 (535)
-+. .. ..++.+|+.++..+.. ++.+.. ...|++||..+ +++..++.
T Consensus 246 l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~---~~~i~lPpLreR~~Di~~l~~ 313 (368)
T 3dzd_A 246 LETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLS---VFQIYLPPLRERGKDVILLAE 313 (368)
T ss_dssp HHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT---SEEEECCCGGGSTTHHHHHHH
T ss_pred HHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhC---CeEEeCCChhhchhhHHHHHH
Confidence 221 11 1256788888775332 333332 25788999877 66665543
No 94
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.58 E-value=0.00053 Score=71.31 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=92.1
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccCCHHHHHHHHHHHHhhccc
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCYSPRILFESILNQLLLHKK 136 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~ 136 (535)
+.|....+.++...+........+++|+|++|||||.+++.+-.... -+++.|||.... ..++ -..|.++.+
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~--~~~~---~~elfg~~~ 213 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP--RDIF---EAELFGYEK 213 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC--HHHH---HHHHHCBCT
T ss_pred hhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC--HHHH---HHHhcCCCC
Confidence 45556667777776655434445799999999999999988876653 589999998753 2233 345556544
Q ss_pred cccCCCCCCcCCCChhHHHHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCChHHHHHcc
Q 009415 137 NAFNGYSSAKRCEKPSDFVIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSSILPFLFGL 216 (535)
Q Consensus 137 ~~~~g~~~~~r~~~~~~f~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL 216 (535)
....|.... .. . .++. ..+. .|+|||++.|. .++...|++.
T Consensus 214 g~~tga~~~----~~-g-------~~~~--------------------a~~g--tlfldei~~l~-----~~~q~~Ll~~ 254 (387)
T 1ny5_A 214 GAFTGAVSS----KE-G-------FFEL--------------------ADGG--TLFLDEIGELS-----LEAQAKLLRV 254 (387)
T ss_dssp TSSTTCCSC----BC-C-------HHHH--------------------TTTS--EEEEESGGGCC-----HHHHHHHHHH
T ss_pred CCCCCcccc----cC-C-------ceee--------------------CCCc--EEEEcChhhCC-----HHHHHHHHHH
Confidence 333332110 11 0 1111 1222 67799999995 2344445543
Q ss_pred ccc---c--C-----CCcEEEEEEeCCCccc----------cccCCCCCCCeeEecCCCCH--HHHHHHHh
Q 009415 217 SDI---L--K-----MPEVGMIFISSTSPDT----------YHSNTGYVAPIHVYFPECTE--DDLRQIFM 265 (535)
Q Consensus 217 ~E~---~--~-----~~~l~vI~Is~~~~~~----------f~~~~g~~~p~~I~FppYt~--~el~~IL~ 265 (535)
-+. . + ..++.+|+.+|..... ++.+.. +..|++||... +++..+..
T Consensus 255 l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~---~~~i~lPpLreR~~Di~~l~~ 322 (387)
T 1ny5_A 255 IESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLG---VIEIEIPPLRERKEDIIPLAN 322 (387)
T ss_dssp HHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT---TEEEECCCGGGCHHHHHHHHH
T ss_pred HhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhc---CCeecCCcchhccccHHHHHH
Confidence 221 1 0 1257788888875332 222232 26788998764 56655543
No 95
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.55 E-value=0.00024 Score=66.91 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=35.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHHHHH
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPRILF 124 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r~l~ 124 (535)
.++..+.|.|++|+|||++++.++...+.+.+|+++....+...+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHH
Confidence 3445688999999999999999998556788999987655554443
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.41 E-value=0.00078 Score=84.93 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHH
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR 121 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r 121 (535)
.-+..|...+.. .-++.+.||+|||||++++++.+.++..++.+||.+..+..
T Consensus 633 r~~~tl~~Al~~----~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~ 685 (2695)
T 4akg_A 633 IGFATLTDSLHQ----KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQ 685 (2695)
T ss_dssp HHHHHHHHHHHT----TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHH
T ss_pred HHHHHHHHHHHh----CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChh
Confidence 344455555544 34578999999999999999999999999999998776543
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.40 E-value=0.00012 Score=73.92 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=27.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
..++|+||||||||+++.+++.+.+.+..|+++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 347899999999999999999876666677776
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.37 E-value=0.0015 Score=83.19 Aligned_cols=140 Identities=16% Similarity=0.270 Sum_probs=84.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEeccccCCHHHHHHHHHHHHhhccccccC-CCCCCcCCCChhHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFN-GYSSAKRCEKPSDFVIFV 158 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~-g~~~~~r~~~~~~f~~~L 158 (535)
.-++++.||+|||||+++..++..+ +..++.|||....++..+...+-..+ .... ..+ |. +
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~-e~~~-~~~~G~--------~------- 1366 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHC-EYKR-TPSGET--------V------- 1366 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHE-EEEE-CTTSCE--------E-------
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcc-eEEe-ccCCCc--------c-------
Confidence 4689999999999999999988877 45677899988777755444432221 1000 000 10 0
Q ss_pred HHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--CCCChHHHHHccccc-----------cCCCcE
Q 009415 159 REALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--KSSSILPFLFGLSDI-----------LKMPEV 225 (535)
Q Consensus 159 ~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~~~~lL~~L~rL~E~-----------~~~~~l 225 (535)
+.+...++.+|+++||++.-.. | +.+..+..|..+-|. ..+.++
T Consensus 1367 ----------------------~~p~~~Gk~~VlFiDDiNmp~~-D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~ 1423 (3245)
T 3vkg_A 1367 ----------------------LRPTQLGKWLVVFCDEINLPST-DKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKI 1423 (3245)
T ss_dssp ----------------------EEESSTTCEEEEEETTTTCCCC-CTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSE
T ss_pred ----------------------cCCCcCCceEEEEecccCCCCc-cccccccHHHHHHHHHHcCCeEECCCCeEEEecCe
Confidence 0011136789999999986531 2 223345444434332 113455
Q ss_pred EEEEEeCCC--------ccccccCCCCCCCeeEecCCCCHHHHHHHHh
Q 009415 226 GMIFISSTS--------PDTYHSNTGYVAPIHVYFPECTEDDLRQIFM 265 (535)
Q Consensus 226 ~vI~Is~~~--------~~~f~~~~g~~~p~~I~FppYt~~el~~IL~ 265 (535)
.+|...|.+ +++|.++. ..|+++.++.+++..|..
T Consensus 1424 ~~vaamnPp~~gGr~~l~~Rf~r~F-----~vi~i~~ps~esL~~If~ 1466 (3245)
T 3vkg_A 1424 QFVGACNPPTDAGRVQLTHRFLRHA-----PILLVDFPSTSSLTQIYG 1466 (3245)
T ss_dssp EEEEEECCTTSTTCCCCCHHHHTTC-----CEEECCCCCHHHHHHHHH
T ss_pred EEEEEcCCCCCCCCccCCHHHHhhc-----eEEEeCCCCHHHHHHHHH
Confidence 666655432 34555444 478999999999999953
No 99
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.33 E-value=0.00074 Score=64.48 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=36.0
Q ss_pred HHhccCCCCCCeEEECCCCCCHHHHHHHHHHh--c-------CCCeEEEeccccCCHHHH
Q 009415 73 LLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--L-------SRPFVYTSCLSCYSPRIL 123 (535)
Q Consensus 73 ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~--l-------~~~~~yVnc~~~~s~r~l 123 (535)
+|+.....+..+.|+||+|+|||++++.++.. + +...+|++.........+
T Consensus 16 ~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 16 LLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp HTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred hhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 34333334456889999999999999999984 3 356889998765444433
No 100
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.27 E-value=0.0014 Score=61.87 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=32.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~ 126 (535)
.+..+.|.|++|+|||++++.++..+ +..+.|+++.. +...+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc--CHHHHHHH
Confidence 34568899999999999999999654 46788888644 34444443
No 101
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.25 E-value=0.00088 Score=68.44 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=39.0
Q ss_pred HHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh--c-------CCCeEEEeccccCCHHHHHH
Q 009415 70 LLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH--L-------SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 70 L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~--l-------~~~~~yVnc~~~~s~r~l~~ 125 (535)
|=.+|+.....+..+.|+|+||+|||+++..++.. + +.+++||++.....+..+.+
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 33444433333445889999999999999999876 2 45788999877555655544
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.23 E-value=0.00054 Score=64.56 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=24.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHh--------cC-CCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH--------LS-RPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~--------l~-~~~~yVnc~~~ 117 (535)
..+|+|+||||||+.+...+.. .+ .++.+.||...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 3679999999999887775433 23 44556787654
No 103
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.22 E-value=0.00081 Score=70.20 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPR 121 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r 121 (535)
++..+.|+|++|+|||++++.++-.. +...+|++..+...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~ 227 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV 227 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHH
Confidence 44568899999999999999876332 2458899977655444
No 104
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.16 E-value=0.00053 Score=69.46 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=35.5
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---------CCCeEEEeccccCCHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---------SRPFVYTSCLSCYSPRILFE 125 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---------~~~~~yVnc~~~~s~r~l~~ 125 (535)
++..+.|+|+||+|||+++.+++... +.+++||++.....+..+.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~ 160 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN 160 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 34458899999999999999998764 45789999877655655543
No 105
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.13 E-value=7.2e-05 Score=82.28 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=39.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHhccC---------CCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 54 DDLLSRFPGRRVQILELLRLLGTLN---------SSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 54 ~~l~~~~p~Re~qi~~L~~ll~~~~---------~~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
+.+...+.|.+.-...|...+.... ....+++++||||||||++++++.+.++.
T Consensus 291 ~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 291 SSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp HHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred HhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC
Confidence 4456678899887666655444321 01127999999999999999999988863
No 106
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.02 E-value=0.0015 Score=62.38 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHH
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~I 127 (535)
.++..+.|.|+||+|||+++..++... +.+.+|++..+ +...+.+.+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS--CHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC--CHHHHHHHH
Confidence 344568899999999999988877543 56889998654 344444443
No 107
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.99 E-value=0.002 Score=66.10 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=32.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~ 120 (535)
++..+.|+||||+|||+++.+++..+ +.+++||+..+....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch
Confidence 44468899999999999999999764 467889987665544
No 108
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.86 E-value=0.0014 Score=65.98 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=31.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc-----CCCeEEEeccccCCH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL-----SRPFVYTSCLSCYSP 120 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l-----~~~~~yVnc~~~~s~ 120 (535)
.+.|+||||+|||+++.+++... +-.++||++-+...+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 57899999999999988887653 567899998776655
No 109
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.84 E-value=0.0042 Score=63.98 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=32.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s 119 (535)
++..+.|+|+||+|||+++.+++... +.+++||++.....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~ 115 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD 115 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh
Confidence 34458899999999999999988764 57899999865443
No 110
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.82 E-value=0.0018 Score=66.35 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=32.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~ 120 (535)
++..+.|+|+||+|||+++.+++... +.+++|++.......
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH
Confidence 44568899999999999999988654 568899997654443
No 111
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.77 E-value=0.004 Score=58.68 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC---------CCeEEEeccccCCH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS---------RPFVYTSCLSCYSP 120 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~---------~~~~yVnc~~~~s~ 120 (535)
++..+.|.||+|+||||+++.++..+. -..+|++.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 344688999999999999999987542 23788887654333
No 112
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.76 E-value=0.0081 Score=55.66 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHH-HHHHHhc
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL 105 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v-~~vl~~l 105 (535)
-|..|...+..++.. .++++.+|+|+|||.+. ..++..+
T Consensus 26 ~~~~Q~~~i~~~~~~-----~~~lv~apTGsGKT~~~~~~~~~~~ 65 (206)
T 1vec_A 26 PSPIQEESIPIALSG-----RDILARAKNGTGKSGAYLIPLLERL 65 (206)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEEECCSSSTTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHccC-----CCEEEECCCCCchHHHHHHHHHHHh
Confidence 478888777776643 57999999999999543 3455554
No 113
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.76 E-value=0.004 Score=68.09 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.|...+...+. .+.++|.|+||||||+++..++..+
T Consensus 192 ~~Q~~Av~~~~~-----~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 192 EEQASVLDQLAG-----HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHHHHHHHHHTT-----CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466666666543 2578999999999999999999765
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.00039 Score=66.79 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
+..++|+|++|+||||++..++..+ +.++.+++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~ 48 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 48 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 4458899999999999888888765 456777753
No 115
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.73 E-value=0.0044 Score=58.37 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
.-|..|...+..++.. .+++|.+|+|+|||.+ +..++..+
T Consensus 36 ~~~~~Q~~~i~~~~~~-----~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEG-----HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcC-----CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3588888877776643 4699999999999976 56666655
No 116
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.71 E-value=0.0023 Score=64.44 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=35.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---------------C----CCeEEEeccccCCHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---------------S----RPFVYTSCLSCYSPRILFES 126 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---------------~----~~~~yVnc~~~~s~r~l~~~ 126 (535)
++..+.|+|+||+|||+++.+++... + .+++||++.....+..+.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 34458899999999999999988652 2 57889998776556655543
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.66 E-value=0.0098 Score=75.83 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCCHH
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYSPR 121 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s~r 121 (535)
.=+..|...+... -...+.||+|||||.+++.+.+.+|..++.+||.+..+..
T Consensus 592 rcy~tl~~Al~~~----~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~ 644 (3245)
T 3vkg_A 592 RCYLTLTQALESR----MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQ 644 (3245)
T ss_dssp HHHHHHHHHHHTT----CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHH
T ss_pred HHHHHHHHHHHhc----CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 3445555555542 2346889999999999999999999999999998765543
No 118
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.65 E-value=0.0025 Score=65.42 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~ 120 (535)
++..+.|+|+||+|||+++.+++... +.+++||++.....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 105 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 34458899999999999999988764 578999998655443
No 119
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.58 E-value=0.0013 Score=62.21 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.-+..|..++... ....+++||||||||||+++.++++.+.
T Consensus 43 ~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455566666541 1112599999999999999999998874
No 120
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.58 E-value=0.0043 Score=76.10 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=38.4
Q ss_pred HHHHHh-ccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHH
Q 009415 70 LLRLLG-TLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPR 121 (535)
Q Consensus 70 L~~ll~-~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r 121 (535)
|-.+|+ ....++.++.|+||||||||+++.+++.+. +..++|+++.+...+-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l 1470 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 1470 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHH
Confidence 344455 333455679999999999999999987653 5789999987765553
No 121
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.51 E-value=0.018 Score=55.33 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=38.3
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
.+.-|+.|...+..++.. ..++|.||+|+|||.++..++..++.+.+++-
T Consensus 91 ~~~l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp CCCCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CCCcCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 345577888877776544 34899999999999999988888876666653
No 122
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.51 E-value=0.02 Score=52.89 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
.-|..|...+..++.. .+++|.+|+|+|||.+ +..++..+
T Consensus 23 ~~~~~Q~~~i~~~~~~-----~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 23 TPTPIQAAALPLALEG-----KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHcCC-----CCEEEECCCCChHHHHHHHHHHHHH
Confidence 3477887777766653 5799999999999966 55566654
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.47 E-value=0.0023 Score=58.09 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=28.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.++|.|++|+||||+.+.+.+.++.+++.++.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 58899999999999999999999887776654
No 124
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.44 E-value=0.0031 Score=62.69 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.++|.||||+||||+++.+++.++..+++|++...
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 48899999999999999999988656778887544
No 125
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.39 E-value=0.0057 Score=56.86 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=31.6
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.=|+.|...+..++.. .+++|.+|+|+|||.+....+..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~-----~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG-----KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT-----CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhcC-----CCEEEEcCCCCCHHHHHHHHHHH
Confidence 456688888888777643 47999999999999877666644
No 126
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.38 E-value=0.0039 Score=69.12 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.|...+...|.. .+..+|+||||||||+++-.++..+
T Consensus 192 ~~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 192 TSQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5777777777754 3467899999999997777766554
No 127
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.34 E-value=0.013 Score=61.98 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=37.2
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
.++..++|.|+||+|||+++..++..+ +.+++|++.-. +...+..+++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~--s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM--SAQQLVMRMLCAE 255 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHHHH
Confidence 344568899999999999999988754 46788887543 4566666665443
No 128
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.31 E-value=0.013 Score=58.78 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=38.9
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLL 132 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~ 132 (535)
.++..++|.|+||+|||+++.+++... +.+++|+++- -+...+..+++....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE--~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE--MGKKENIKRLIVTAG 120 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 445568999999999999999988654 3578888864 466777777766543
No 129
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.31 E-value=0.012 Score=59.53 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=60.9
Q ss_pred cEEEEEEeCCcc-cccccCCCChHHHHHccccccCCCcEEEEEEeCCCc-----cccccCCCCCCCeeEecCCCCHHHHH
Q 009415 188 KMIYLIFDNFEL-VREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSP-----DTYHSNTGYVAPIHVYFPECTEDDLR 261 (535)
Q Consensus 188 ~~~vlVLDe~d~-L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~-----~~f~~~~g~~~p~~I~FppYt~~el~ 261 (535)
+.-||||||++. +. .+...+|.+.-|..+ ++..+|++++... ..++..... ....+.|.+.+.+++.
T Consensus 76 ~~kvvii~~~~~kl~-----~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 76 SRQTLLLLLPENGPN-----AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQTPEQAQLP 148 (343)
T ss_dssp SCEEEEEECCSSCCC-----TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEECCCCTTHHH
T ss_pred CCeEEEEECCCCCCC-----hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEeeCCCHHHHH
Confidence 456778999998 74 345566666556543 5788888876531 123322111 1268999999999999
Q ss_pred HHHhhcCCChhhhhHHHHhhhhccccc-cccHHHHHHHHHHh
Q 009415 262 QIFMRNQANQKLYSSFLDIVLRPFCRI-TKRVDELSTAFSLL 302 (535)
Q Consensus 262 ~IL~~~~~~~~l~~~f~~~vl~~~~~~-~rdl~eL~~~~~~L 302 (535)
+.|.......++ .+=...+..+... ..|+..+...+++|
T Consensus 149 ~~l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~elekl 188 (343)
T 1jr3_D 149 RWVAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQALERL 188 (343)
T ss_dssp HHHHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 887654321110 0111223333333 34777777777666
No 130
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.30 E-value=0.017 Score=54.84 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=37.1
Q ss_pred CCCCCccccCCCCCHHHHhhc-CC-ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 39 PTLGDLVFGQEPISLDDLLSR-FP-GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 39 ~~~~~~~f~~~~~~~~~l~~~-~p-~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
.++.++ +..+...+.+.+. +. -|+.|...+..++.. .++++.+|+|+|||.+ +..++..+
T Consensus 24 ~~f~~l--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-----~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 24 ADFESL--LLSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-----LDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CCGGGG--TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCHhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 345554 2233344444332 22 478888777766543 5799999999999966 45555554
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.28 E-value=0.024 Score=57.86 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=31.3
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC---------CCeEEEeccccCCH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS---------RPFVYTSCLSCYSP 120 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~---------~~~~yVnc~~~~s~ 120 (535)
.+..+.|+|++|+|||++++.++.... -.++||+..+...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~ 179 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 179 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH
Confidence 344578999999999999999998762 24589987655333
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.17 E-value=0.0032 Score=57.52 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
++.++|.|++|+||||+.+.+.+.++.+++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999987654
No 133
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.15 E-value=0.012 Score=55.18 Aligned_cols=135 Identities=10% Similarity=0.080 Sum_probs=69.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHH-h--cCCCeEEEecccc---CCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFR-H--LSRPFVYTSCLSC---YSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDF 154 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~-~--l~~~~~yVnc~~~---~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f 154 (535)
-+.|+||+++|.||||++-.+.- . .+.++.++..... +....+++.+ .+ .+.... .|+.. +.....+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L--~v-~~~~~g-~gf~~--~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH--GV-EFQVMA-TGFTW--ETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG--TC-EEEECC-TTCCC--CGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC--Cc-EEEEcc-ccccc--CCCCcHHH
Confidence 46899999999999987776653 3 3678888854432 3334444443 11 111111 12210 00000110
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCccccccc--CCCChHHHHHccccccCCCcEEEEEEeC
Q 009415 155 VIFVREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWD--KSSSILPFLFGLSDILKMPEVGMIFISS 232 (535)
Q Consensus 155 ~~~L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d--~~~~lL~~L~rL~E~~~~~~l~vI~Is~ 232 (535)
.......++...+.+ ..+..-+|||||+-....++ ...+++..|.+-+ .+..||+.++
T Consensus 102 ~~~a~~~l~~a~~~l---------------~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp-----~~~~vIlTGr 161 (196)
T 1g5t_A 102 TAACMAVWQHGKRML---------------ADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP-----GHQTVIITGR 161 (196)
T ss_dssp HHHHHHHHHHHHHHT---------------TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC-----TTCEEEEECS
T ss_pred HHHHHHHHHHHHHHH---------------hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc-----CCCEEEEECC
Confidence 111222333222221 13456789999996543221 1134444443222 4689999999
Q ss_pred CCccccccC
Q 009415 233 TSPDTYHSN 241 (535)
Q Consensus 233 ~~~~~f~~~ 241 (535)
.+|+.+...
T Consensus 162 ~ap~~l~e~ 170 (196)
T 1g5t_A 162 GCHRDILDL 170 (196)
T ss_dssp SCCHHHHHH
T ss_pred CCcHHHHHh
Confidence 998877643
No 134
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.14 E-value=0.01 Score=62.63 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
.++..++|.|+||+|||+++..++... +.+++|+++- -+...+..+++....+
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCSEAR 254 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHHHcC
Confidence 344568899999999999999888653 4688898864 3566777777765544
No 135
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.13 E-value=0.0073 Score=57.73 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
-|..|...+..++.. .+++|.+|+|+|||.+ +..++..+
T Consensus 53 ~~~~Q~~ai~~i~~~-----~~~li~apTGsGKT~~~~l~~l~~l 92 (237)
T 3bor_A 53 PSAIQQRAIIPCIKG-----YDVIAQAQSGTGKTATFAISILQQL 92 (237)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 588888888776653 4699999999999965 55555554
No 136
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.11 E-value=0.014 Score=63.16 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=49.5
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCccc-----cccCCCCCCCeeEecCCCCHHHHHH
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDT-----YHSNTGYVAPIHVYFPECTEDDLRQ 262 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~-----f~~~~g~~~p~~I~FppYt~~el~~ 262 (535)
..+|||+||+..+... .+.++...|.++...-....+.+|+.++.+..+ +..+++ ..|.|.--+..+...
T Consensus 343 P~ivvVIDE~~~L~~~-~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~----~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 343 PTIVVVVDEFADMMMI-VGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIP----TRIAFQVSSKIDSRT 417 (574)
T ss_dssp CEEEEEESCCTTHHHH-TCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCC----EEEEECCSCHHHHHH
T ss_pred CcEEEEEeCHHHHhhh-hhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhc----cEEEEEcCCHHHHHH
Confidence 5689999999988531 123444445554433223468999998876322 233443 588899899999999
Q ss_pred HHhhc
Q 009415 263 IFMRN 267 (535)
Q Consensus 263 IL~~~ 267 (535)
||...
T Consensus 418 ILd~~ 422 (574)
T 2iut_A 418 ILDQG 422 (574)
T ss_dssp HHSSS
T ss_pred hcCcc
Confidence 99754
No 137
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.10 E-value=0.0035 Score=56.25 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=25.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|.|++|+||||+++.+.+.++..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 5789999999999999999999986654
No 138
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.08 E-value=0.028 Score=57.09 Aligned_cols=52 Identities=21% Similarity=0.171 Sum_probs=39.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLL 132 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~ 132 (535)
.++..++|.|+||+|||+++..++... +.+++|++.- -+...+..+++....
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE--ms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE--MSAEQLALRALSDLT 98 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS--SCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC--CCHHHHHHHHHHHhh
Confidence 445568999999999999999998764 5778888763 356677777766543
No 139
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.07 E-value=0.06 Score=53.91 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHH-HHHhc
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQ-VFRHL 105 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~-vl~~l 105 (535)
.-|..|...+..++.. ...+++.+|+|+|||.+... ++..+
T Consensus 28 ~~~~~Q~~~i~~~~~~----~~~~l~~~~TGsGKT~~~~~~~~~~~ 69 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLND----EYNIVAQARTGSGKTASFAIPLIELV 69 (367)
T ss_dssp SCCHHHHHHHHHHHHT----CSEEEEECCSSSSHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhCC----CCCEEEECCCCChHHHHHHHHHHHHh
Confidence 3578888888777654 24789999999999976544 44443
No 140
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.02 E-value=0.013 Score=54.66 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHHHhccCC-CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 61 PGRRVQILELLRLLGTLNS-SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~-~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
+.|+.++.+|+..+..... .+..+.|.|++|+||||+++.+...+ +..+.+++....
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 1 MELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CCHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 3578888888887765321 22347799999999999999999876 455666654443
No 141
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.02 E-value=0.0045 Score=56.39 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.+.|+|.|++|+||||+++.+.+.++..++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 457999999999999999999999975543
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.00 E-value=0.0046 Score=57.57 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=26.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+..++|.|++|+||||+.+.+.+.++.+++
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 457999999999999999999999987664
No 143
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.91 E-value=0.016 Score=56.95 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=27.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc-------------CCCeEEEeccc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL-------------SRPFVYTSCLS 116 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l-------------~~~~~yVnc~~ 116 (535)
+..+.|+|++|+||||+++.++..+ +.+++|++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 4468899999999999999988643 13567887654
No 144
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.90 E-value=0.041 Score=56.50 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
-|..|...+..++.. .++++.+|+|+|||.+ +..+++.+
T Consensus 60 ~~~~Q~~ai~~i~~~-----~~~lv~a~TGsGKT~~~~~~~~~~l 99 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKG-----RDVIAQSQSGTGKTATFSISVLQCL 99 (410)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCCCchHHHHHHHHHHH
Confidence 577887777776653 4699999999999954 44555554
No 145
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.89 E-value=0.057 Score=51.51 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHH
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFR 103 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~ 103 (535)
-|..|...+-.++.. .++++.+|+|+|||.+ +..++.
T Consensus 52 ~~~~Q~~~i~~~~~g-----~~~l~~apTGsGKT~~~~l~~l~ 89 (242)
T 3fe2_A 52 PTAIQAQGWPVALSG-----LDMVGVAQTGSGKTLSYLLPAIV 89 (242)
T ss_dssp CCHHHHHHHHHHHHT-----CCEEEEECTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCcCHHHHHHHHHHHH
Confidence 467787777666643 5799999999999965 333443
No 146
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.85 E-value=0.017 Score=61.78 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=37.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILNQLL 132 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~Il~~L~ 132 (535)
++..++|.|+||+|||+++.+++.+. +.+++|++.-+ ++..+..+++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 34458899999999999999988764 45788998643 56667776655443
No 147
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.84 E-value=0.0056 Score=55.09 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.+.+++|.|++|+||||+.+.+.+.++.+++
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4668999999999999999999999997664
No 148
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.83 E-value=0.0065 Score=55.45 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+.|+|.|+||+||||+.+.+.+.++.+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 46899999999999999999999987653
No 149
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.83 E-value=0.0084 Score=57.12 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=32.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh----cCCCeEEEeccccCCHHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRH----LSRPFVYTSCLSCYSPRILFESI 127 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~----l~~~~~yVnc~~~~s~r~l~~~I 127 (535)
++..++|+|+||+|||+++.+++.+ .+.+++|++..+ ++..+.+++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC--CHHHHHHHH
Confidence 3445889999999999999887643 356788887643 455555544
No 150
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.83 E-value=0.0051 Score=54.92 Aligned_cols=27 Identities=11% Similarity=0.306 Sum_probs=23.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|.|++|+||||+++.+ +.++.+++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 5789999999999999999 88886654
No 151
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.79 E-value=0.0059 Score=55.39 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
..++|.|++|+||||+.+.+.+.++.++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~ 32 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVF 32 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 4689999999999999999999998554
No 152
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.77 E-value=0.078 Score=50.15 Aligned_cols=31 Identities=16% Similarity=0.059 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~ 97 (535)
-|..|...+..++.. .+++|.+|+|+|||.+
T Consensus 48 ~~~~Q~~~i~~~~~~-----~~~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 48 VTEIQKQTIGLALQG-----KDVLGAAKTGSGKTLA 78 (236)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHH
T ss_pred CCHHHHHHHHHHhCC-----CCEEEEeCCCCcHHHH
Confidence 467777777666543 5799999999999975
No 153
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.76 E-value=0.05 Score=50.88 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=36.9
Q ss_pred CCCCccccCCCCCHHHHhhc-CC-ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHH-HHHHhc
Q 009415 40 TLGDLVFGQEPISLDDLLSR-FP-GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII-QVFRHL 105 (535)
Q Consensus 40 ~~~~~~f~~~~~~~~~l~~~-~p-~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~-~vl~~l 105 (535)
+++++ +..+..++.+.+. +. =|..|...+..++.. .+++|.+|+|+|||.+.. .++..+
T Consensus 15 ~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-----~~~li~~~TGsGKT~~~~~~~~~~~ 76 (220)
T 1t6n_A 15 GFRDF--LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-----MDVLCQAKSGMGKTAVFVLATLQQL 76 (220)
T ss_dssp CSTTS--CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CHhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-----CCEEEECCCCCchhhhhhHHHHHhh
Confidence 44554 2233345555442 32 588888888777654 469999999999996544 344443
No 154
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.72 E-value=0.029 Score=54.07 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHh
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRH 104 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~ 104 (535)
.-|..|...+..++.. ..+++.+|+|+|||.+ +..++..
T Consensus 65 ~~~~~Q~~~i~~i~~~-----~~~lv~a~TGsGKT~~~~~~il~~ 104 (249)
T 3ber_A 65 KPTKIQIEAIPLALQG-----RDIIGLAETGSGKTGAFALPILNA 104 (249)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-----CCEEEEcCCCCCchhHhHHHHHHH
Confidence 4578887777766643 5799999999999965 3344443
No 155
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.71 E-value=0.01 Score=57.28 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=25.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
..|+|.|+||+||||+++.+.+.++..++.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 358999999999999999999999865543
No 156
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.63 E-value=0.0083 Score=53.99 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=26.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
..+.|.|++|+||||+.+.+...++. .+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~--~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM--EFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC--EEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC--CEEec
Confidence 46899999999999999999999885 44553
No 157
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.63 E-value=0.11 Score=50.38 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~ 97 (535)
-|.-|...+-.++.. .++++.+|+|+|||.+
T Consensus 77 ~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEG-----RDLLAAAKTGSGKTLA 107 (262)
T ss_dssp CCHHHHHHHHHHHHT-----CCCEECCCTTSCHHHH
T ss_pred CCHHHHHHHHHHhCC-----CcEEEEccCCCCchHH
Confidence 467787777666654 4689999999999965
No 158
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.59 E-value=0.012 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
.++++|||||||||.++.+++..+..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 35999999999999999999987653
No 159
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.58 E-value=0.026 Score=53.94 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=34.4
Q ss_pred cCCCCCHHHHhhc-CC-ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 47 GQEPISLDDLLSR-FP-GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 47 ~~~~~~~~~l~~~-~p-~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
+..+..++.+.+. +. -|..|...+..++.. .++++.+|+|+|||.+ +..++..+
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-----~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHG-----RELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3444444444432 22 577887777666543 4699999999999965 44455544
No 160
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.55 E-value=0.035 Score=52.02 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
=|..|...+..++.. .++++.+|+|+|||.+ +..+++.+
T Consensus 27 ~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 27 PTEIQERIIPGALRG-----ESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp CCHHHHHHHHHHHHT-----CCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHH
Confidence 478888887776653 4789999999999966 55555554
No 161
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.53 E-value=0.0077 Score=55.19 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=29.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
+..+.|.|++|+||||+++.+...++...++++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 34588999999999999999999877777777743
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.51 E-value=0.0075 Score=55.36 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
+..++|.|++|+||||+++.+.+.++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 37 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTH 37 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45689999999999999999999998654
No 163
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.50 E-value=0.057 Score=55.29 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
.-|..|...+..++.. ..++|.+|+|+|||.+ +..+++.+
T Consensus 62 ~~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKG-----YDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHhHHHhCC-----CCEEEECCCCCcccHHHHHHHHHHH
Confidence 4577787777666653 4699999999999976 55555554
No 164
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.50 E-value=0.0072 Score=55.49 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=26.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh-cCCCeEEEecc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRH-LSRPFVYTSCL 115 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~-l~~~~~yVnc~ 115 (535)
+..++|.|++|+||||+.+.+.+. ++. .++++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~--~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGF--QHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTE--EEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC--EEeeHH
Confidence 345999999999999999999998 564 445543
No 165
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.49 E-value=0.016 Score=70.13 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=32.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~ 120 (535)
++..++|+|+||+|||+++.+++.+. +.+++|++..+....
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 774 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHH
Confidence 44568999999999999999998764 457899997765443
No 166
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.49 E-value=0.0095 Score=53.52 Aligned_cols=28 Identities=29% Similarity=0.524 Sum_probs=24.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
..++|.|++|+||||+.+.+.+.++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEF 30 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 3689999999999999999999998654
No 167
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.49 E-value=0.0082 Score=54.95 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|.|+||+||||+++.+.+.++..++
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i 34 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLL 34 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 5889999999999999999999986553
No 168
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.44 E-value=0.062 Score=57.64 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=46.9
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCcccc-----ccCCCCCCCeeEecCCCCHHHHHH
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY-----HSNTGYVAPIHVYFPECTEDDLRQ 262 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f-----~~~~g~~~p~~I~FppYt~~el~~ 262 (535)
..++||+||+..+... .+..+...|.+|...-....+.+|++++.+..+. ..++ +..|-|.--++.+...
T Consensus 297 P~ivlvIDE~~~ll~~-~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~----~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANI----PTRIAFTVSSKIDSRT 371 (512)
T ss_dssp CEEEEEEETHHHHHHH-HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHC----CEEEEECCSSHHHHHH
T ss_pred CcEEEEEeCHHHHHhh-hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhc----CCeEEEEcCCHHHHHH
Confidence 4579999999877531 1123333344443221112689998888874332 2233 2588898899999999
Q ss_pred HHhhc
Q 009415 263 IFMRN 267 (535)
Q Consensus 263 IL~~~ 267 (535)
||...
T Consensus 372 ilg~~ 376 (512)
T 2ius_A 372 ILDQA 376 (512)
T ss_dssp HHSSS
T ss_pred hcCCc
Confidence 99754
No 169
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.41 E-value=0.19 Score=47.97 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHh
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRH 104 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~ 104 (535)
-|..|...+..++.. .++++.+|+|+|||.+ +..++..
T Consensus 46 ~~~~Q~~~i~~i~~~-----~~~l~~a~TGsGKT~~~~~~~l~~ 84 (253)
T 1wrb_A 46 PTPIQKNAIPAILEH-----RDIMACAQTGSGKTAAFLIPIINH 84 (253)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHH
Confidence 477888777776653 4799999999999964 3334443
No 170
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.39 E-value=0.01 Score=55.60 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.7
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
|+|.|+||+||||+++.+.+.++..++-
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 7899999999999999999999866543
No 171
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.37 E-value=0.12 Score=51.17 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yV 112 (535)
=|..|...+..++.. .+++|.+|+|+|||.+....+-..+.+.++|
T Consensus 17 l~~~Q~~~i~~i~~~-----~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv 62 (337)
T 2z0m_A 17 FTEVQSKTIPLMLQG-----KNVVVRAKTGSGKTAAYAIPILELGMKSLVV 62 (337)
T ss_dssp CCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHhcC-----CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEE
Confidence 367777777666543 4799999999999976666555555555544
No 172
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.36 E-value=0.027 Score=69.15 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=32.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~ 120 (535)
++..+.|+|+||+|||+++.+++.+. +.+++|++.-+....
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~ 425 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 425 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH
Confidence 44558899999999999999998765 368999997765554
No 173
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.36 E-value=0.01 Score=55.12 Aligned_cols=28 Identities=25% Similarity=0.663 Sum_probs=23.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.+|+|.||+|+||||+++.+++...-.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3689999999999999999998875333
No 174
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.35 E-value=0.016 Score=56.17 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=30.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.++|.|+||+||||+++.+.+.++..+++++....
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 48899999999999999999999866777776554
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.34 E-value=0.0096 Score=54.26 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=24.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.++|.|++|+||||+.+.+.+.++.++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~ 32 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKK 32 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 588999999999999999999987543
No 176
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.32 E-value=0.011 Score=55.45 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=24.7
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVY 111 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~y 111 (535)
|+|.|+||+||||+++.+.+.++..++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 7899999999999999999999866543
No 177
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.32 E-value=0.012 Score=54.64 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s 119 (535)
..++|.|++|+||||+++.+.+.++.. ++++.....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~--~i~~d~~~~ 54 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYP--FIEGDALHP 54 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCC--EEEGGGGCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCE--EEeCCcCcc
Confidence 358999999999999999999999754 456655543
No 178
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.31 E-value=0.0079 Score=54.86 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=22.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.++|.|++|+||||+++.+.+.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999886
No 179
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.31 E-value=0.027 Score=56.63 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=26.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
.++|.||+|+|||+++..+++.++. ..|||..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~--~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG--EVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE--EEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc--ceeecCc
Confidence 5789999999999999999999864 4566543
No 180
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.30 E-value=0.024 Score=62.18 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=38.6
Q ss_pred hcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 58 SRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 58 ~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+.+.|.+..++.+...+.. ..+++|+||+|||||++++.+...+.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~----g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ----KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ceEECchhhHhhccccccC----CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4677888888888887766 46899999999999999999999885
No 181
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.30 E-value=0.023 Score=52.02 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=25.5
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
|.|.|++|+||||+++.+.+.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999988 88776554
No 182
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.29 E-value=0.01 Score=54.15 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=24.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.|+|.|++|+||||+.+.+.+.++.++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 488999999999999999999998644
No 183
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.28 E-value=0.15 Score=47.95 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=33.4
Q ss_pred ccCCCCCHHHHhhc--CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHh
Q 009415 46 FGQEPISLDDLLSR--FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRH 104 (535)
Q Consensus 46 f~~~~~~~~~l~~~--~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~ 104 (535)
|+..+..++.+.+. ..=|..|...+-.++.. .++++.+|+|+|||.+ +..++..
T Consensus 25 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-----~~~l~~apTGsGKT~~~~l~~~~~ 81 (228)
T 3iuy_A 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQG-----IDLIVVAQTGTGKTLSYLMPGFIH 81 (228)
T ss_dssp HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHH
Confidence 33444444444332 24577887777666543 5789999999999965 3333443
No 184
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.27 E-value=0.0089 Score=53.92 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHH-hcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFR-HLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~-~l~~~~~yVnc 114 (535)
.++|.|+||+||||+++.+.+ .++ +.+++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~ 34 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPG--FYNINR 34 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTT--EEEECH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCC--cEEecH
Confidence 478999999999999999998 454 555553
No 185
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.27 E-value=0.0085 Score=54.41 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=21.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
..++|.|++|+||||+.+.+.+.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35889999999999999999999998765
No 186
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=95.26 E-value=0.043 Score=60.09 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHH
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIII 99 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~ 99 (535)
|..|..-+..++.. ..+++.+|+|+|||.+..
T Consensus 46 rp~Q~~~i~~il~g-----~d~lv~~pTGsGKTl~~~ 77 (591)
T 2v1x_A 46 RPLQLETINVTMAG-----KEVFLVMPTGGGKSLCYQ 77 (591)
T ss_dssp CTTHHHHHHHHHTT-----CCEEEECCTTSCTTHHHH
T ss_pred CHHHHHHHHHHHcC-----CCEEEEECCCChHHHHHH
Confidence 66676666666653 469999999999997543
No 187
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.26 E-value=0.011 Score=55.71 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=25.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
+..++|.|+||+||||+++.+.+.++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 32 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAH 32 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceE
Confidence 34689999999999999999999998644
No 188
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.26 E-value=0.012 Score=54.60 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=25.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.|+|.|+||+||||+++.+.+.++.+++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4889999999999999999999987654
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.21 E-value=0.013 Score=52.39 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.|+|.|++|+||||+.+.+.+.++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3789999999999999999999986653
No 190
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.20 E-value=0.017 Score=57.61 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=29.9
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCcccc
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPDTY 238 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~~f 238 (535)
..-+|||||+|++.+.. .....+.++....+ ++..+|+.|.+.++..
T Consensus 235 ~l~~lVlDEad~l~~~~---~~~~~~~~i~~~~~-~~~q~i~~SAT~~~~v 281 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQ---GHQDQSIRIQRMLP-RNCQMLLFSATFEDSV 281 (300)
T ss_dssp GCSEEEETTHHHHHHST---THHHHHHHHHTTSC-TTCEEEEEESCCCHHH
T ss_pred hceEEEEeCHHHHhhcc---CcHHHHHHHHHhCC-CCCEEEEEeccCCHHH
Confidence 45588999999997521 23333444444433 4678899998876543
No 191
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.18 E-value=0.029 Score=51.11 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.7
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
+.|.|++|+||||+++.+.+.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999999999988 77766543
No 192
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.16 E-value=0.14 Score=53.78 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=30.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s 119 (535)
.+.|.|++|+||||++..++..+ +.+++.|.|.....
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 37899999999999999988765 57888899877654
No 193
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.15 E-value=0.023 Score=62.63 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
-+.|...+...+.. +..+|.||||||||+++..++..+
T Consensus 182 n~~Q~~av~~~l~~-----~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR-----PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CHHHHHHHHHHHTC-----SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC-----CCeEEECCCCCCHHHHHHHHHHHH
Confidence 46787777776643 468899999999999988887765
No 194
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.13 E-value=0.011 Score=54.33 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=26.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
..++|.|++|+||||+++.+.+.++.. ++++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~--~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFT--HLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCE--EEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe--EEcH
Confidence 458899999999999999999999844 4444
No 195
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.11 E-value=0.067 Score=54.28 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
.-|..|...+..++.. ..++|.+|+|+|||.+ +..++..+
T Consensus 43 ~~~~~Q~~~i~~i~~~-----~~~lv~~~TGsGKT~~~~~~~~~~l 83 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEG-----HDVLAQAQSGTGKTGTFSIAALQRI 83 (394)
T ss_dssp SCCHHHHHHHHHHHHT-----CCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHh
Confidence 4577888777776654 4689999999999966 55555554
No 196
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.11 E-value=0.013 Score=56.91 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=26.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVn 113 (535)
.++|.||+|+||||+.+.+++.++..++.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 4789999999999999999999987665444
No 197
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.07 E-value=0.012 Score=55.78 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+..++|.|++|+||||+++.+.+.++..++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 346899999999999999999999985543
No 198
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.04 E-value=0.072 Score=53.36 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=25.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
.++|.||+|+|||+++..+++.++..+ |||+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~i--is~D 42 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVEL--ISVD 42 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEE--EECC
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcE--Eecc
Confidence 478999999999999999999987544 4543
No 199
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.04 E-value=0.014 Score=54.12 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.|+|.|++|+||||+++.+.+.++.. ++++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~--~i~~ 46 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFV--HLSA 46 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCE--EEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCce--EEeH
Confidence 48899999999999999999999854 4443
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.03 E-value=0.012 Score=55.50 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=24.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRP 108 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~ 108 (535)
+..++|.|++|+||||+++.+.+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3469999999999999999999999853
No 201
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.00 E-value=0.015 Score=55.46 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
..|+|.|++|+||||+++.+.+.++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~ 44 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCH 44 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 4589999999999999999999998544
No 202
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.99 E-value=0.017 Score=56.28 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=28.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc 114 (535)
+..|+|.|+||+||||+++.+.+. ++..+++++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 346899999999999999999987 6777766654
No 203
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.98 E-value=0.012 Score=55.60 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=25.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+..|+|.|+||+||||+++.+.+.++.+++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 346899999999999999999999986554
No 204
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.98 E-value=0.014 Score=55.04 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=24.3
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
|+|.||||+||+|.++.+.++++++|+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 689999999999999999999986653
No 205
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.97 E-value=0.013 Score=53.38 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.++|.|++|+||||+++.+.+.++..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~ 34 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVH 34 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 488999999999999999999998543
No 206
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.95 E-value=0.016 Score=61.37 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
++++|.|++|||||+++..++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999877
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.92 E-value=0.1 Score=54.85 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=28.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
.+.+.|++|+||||++..++..+ +.++..+.|...
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 37789999999999999998665 577888887754
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.89 E-value=0.02 Score=51.96 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=28.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
..+.|.|++|+||||+++.+.+.+ +.++++++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 358899999999999999999987 888888774
No 209
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.87 E-value=0.016 Score=55.19 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=25.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
..|+|.||||+||+|.++.+.++++++++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 35889999999999999999999986553
No 210
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.85 E-value=0.021 Score=53.04 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=27.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
+..++|.|++|+||||+.+.+...+ +...++++.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 4468899999999999999999988 444456763
No 211
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.82 E-value=0.017 Score=54.25 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=24.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|.|+||+||||+++.+.+.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i 29 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3789999999999999999999986554
No 212
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.80 E-value=0.01 Score=54.09 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=25.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVn 113 (535)
.|+|.|++|+||||+++.+.+.++ ..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 478999999999999999999875 3466664
No 213
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.77 E-value=0.017 Score=53.09 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=24.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++|.|++|+||||+++.+.+.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999986543
No 214
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.76 E-value=0.019 Score=53.35 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=29.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s 119 (535)
+..+.|.|++|+||||+++.+...++ .++++......
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~~~ 65 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAFHS 65 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGGSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC--CeEEccccccc
Confidence 44688999999999999999999886 45677666543
No 215
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.75 E-value=0.021 Score=52.70 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=27.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc-CCCeEEEec
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL-SRPFVYTSC 114 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l-~~~~~yVnc 114 (535)
..|+|.|++|+||||+++.+.+.+ +.+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 458899999999999999999998 466666543
No 216
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.73 E-value=0.016 Score=52.34 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=29.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccCC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCYS 119 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~s 119 (535)
..+.|.|++|+||||+++.+...++ .++++......
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~ 44 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHP 44 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC--cEEEeCccccc
Confidence 3588999999999999999998886 45667665543
No 217
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.64 E-value=0.069 Score=64.81 Aligned_cols=120 Identities=16% Similarity=0.233 Sum_probs=73.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh---cCCCeEEEeccccCCHHHHHHHHHHHHhhccccccCCCCCCcCCCChhHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRH---LSRPFVYTSCLSCYSPRILFESILNQLLLHKKNAFNGYSSAKRCEKPSDFVIF 157 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~---l~~~~~yVnc~~~~s~r~l~~~Il~~L~~~~~~~~~g~~~~~r~~~~~~f~~~ 157 (535)
+..+-||||+|||||+++.+++.+ .+-.++||+.-+...+. | +.+++-+...- ...++++-.+.+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~--~---~~~~Gv~~~~l-----~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--Y---ARKLGVDIDNL-----LCSQPDTGEQALEI 1500 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH--H---HHHTTCCGGGC-----EEECCSSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHH--H---HHHcCCCHHHe-----EEeCCCcHHHHHHH
Confidence 345889999999999999999854 46889999987666553 2 55554332110 02234444443333
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccCCcEEEEEEeCCcccccccCCCC-------------hH-HHHHccccccCCC
Q 009415 158 VREALINVIDSLKENAEKTSTSKLKGQVNGKMIYLIFDNFELVREWDKSSS-------------IL-PFLFGLSDILKMP 223 (535)
Q Consensus 158 L~~~l~~~~~~l~~~~~~~s~~k~~~~~~~~~~vlVLDe~d~L~~~d~~~~-------------lL-~~L~rL~E~~~~~ 223 (535)
....+ . .+.+-+||+|.+..|...- .-+ ++ .+|.||.......
T Consensus 1501 ~~~~~----~------------------s~~~~~vvvDsv~al~~~~-e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~ 1557 (1706)
T 3cmw_A 1501 CDALA----R------------------SGAVDVIVVDSVAALTPKA-EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 1557 (1706)
T ss_dssp HHHHH----H------------------HTCCSEEEESCSTTCCCTT-TTC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----H------------------cCCCCEEEEccHHhCCccc-cccccccccchhHHHHHHHHHHHHHHHHHHhC
Confidence 22222 2 2346689999999996421 011 12 3566676555445
Q ss_pred cEEEEEEeCC
Q 009415 224 EVGMIFISST 233 (535)
Q Consensus 224 ~l~vI~Is~~ 233 (535)
++++|||...
T Consensus 1558 ~~~~i~~~~~ 1567 (1706)
T 3cmw_A 1558 NTLLIFINQI 1567 (1706)
T ss_dssp TCEEEEEECB
T ss_pred CcEEEEeecc
Confidence 7899998865
No 218
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.60 E-value=0.023 Score=52.89 Aligned_cols=27 Identities=33% Similarity=0.709 Sum_probs=23.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..++|.||+|+||||+++.+.+.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345689999999999999999999885
No 219
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.60 E-value=0.035 Score=51.79 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=22.6
Q ss_pred CeEEECCCCCCHH-HHHHHHHHhc--CCCeEEEe
Q 009415 83 PLFVYGSASTGKT-SIIIQVFRHL--SRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKT-s~v~~vl~~l--~~~~~yVn 113 (535)
-.||||+.|+||| .+++.+-+.. +.++.|+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 4889999999999 5555554432 46777776
No 220
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.51 E-value=0.038 Score=57.04 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.+..+.|+||+|+||||+++.+...++..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 445688999999999999999998776443
No 221
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.47 E-value=0.022 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.++|.|++|+||||+++.+.+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 28 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH 28 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 378999999999999999999998543
No 222
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.44 E-value=0.025 Score=57.03 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=26.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.++|.||+|+|||++.+.+.+.++..++-++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 58899999999999999999999855544443
No 223
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.44 E-value=0.024 Score=52.56 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=24.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yV 112 (535)
.+.|.|++|+||||+.+.+.+ +++++++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 87555443
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.40 E-value=0.024 Score=53.15 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+..++|.||+|+||||+++.++..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999875
No 225
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.36 E-value=0.032 Score=52.18 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecccc
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSC 117 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~ 117 (535)
+-+++|...+......+..+.|.||+|+||||+++.+...+. ....+|.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 334455555443212233577999999999999999998875 34667765443
No 226
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.36 E-value=0.099 Score=53.34 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCCCCccccCCCCCHHHHhhc-CC-ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHH-HHHHHhc
Q 009415 39 PTLGDLVFGQEPISLDDLLSR-FP-GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL 105 (535)
Q Consensus 39 ~~~~~~~f~~~~~~~~~l~~~-~p-~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v-~~vl~~l 105 (535)
.++.++- ..+...+.+... +. =|..|...+..++.. ..++|.+|+|+|||.+. ..++..+
T Consensus 21 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-----~~~li~a~TGsGKT~~~~~~~~~~~ 83 (400)
T 1s2m_A 21 NTFEDFY--LKRELLMGIFEAGFEKPSPIQEEAIPVAITG-----RDILARAKNGTGKTAAFVIPTLEKV 83 (400)
T ss_dssp CCGGGGC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-----CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-----CCEEEECCCCcHHHHHHHHHHHHHH
Confidence 3455542 233344455432 22 578888888777654 46999999999999654 4444444
No 227
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.32 E-value=0.027 Score=52.95 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=24.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.+.|.|++|+||||+++.+.+.+++++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 588999999999999999999988544
No 228
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.30 E-value=0.023 Score=52.60 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=23.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~ 108 (535)
.|+|.|++|+||||+++.+.+.++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 48899999999999999999998764
No 229
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.30 E-value=0.068 Score=54.11 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHH-HHHHHhc
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL 105 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v-~~vl~~l 105 (535)
.-|..|...+..++.. ...+++|.+|+|+|||.+. ..++..+
T Consensus 27 ~~~~~Q~~~i~~~~~~---~~~~~lv~a~TGsGKT~~~~~~~~~~~ 69 (395)
T 3pey_A 27 KPSKIQERALPLLLHN---PPRNMIAQSQSGTGKTAAFSLTMLTRV 69 (395)
T ss_dssp SCCHHHHHHHHHHHCS---SCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 4577887777776654 2357999999999999654 4455554
No 230
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.18 E-value=0.034 Score=63.02 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
-+.|...+...+.. +..+|.||||||||+++..++..+
T Consensus 358 n~~Q~~Av~~~l~~-----~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR-----PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CHHHHHHHHHHHTS-----SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccC-----CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 46777777776643 468899999999999988888765
No 231
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.18 E-value=0.03 Score=53.73 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
+..+.|.|++|+||||+++.+.+.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 34689999999999999999999998654
No 232
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.044 Score=62.15 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.|...+...+.. +..+|.||||||||+++..++..+
T Consensus 363 ~~Q~~Av~~~l~~-----~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 363 SSQSNAVSHVLQR-----PLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp HHHHHHHHHHTTC-----SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHH
Confidence 6777777766542 468999999999998888777654
No 233
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.10 E-value=0.21 Score=53.73 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~ 97 (535)
-|..|...+-.++.. ....+++.+|+|+|||.+
T Consensus 95 ~~~~Q~~~i~~~l~~---~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 95 LTPVQQKTIKPILSS---EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp CCHHHHHHHHHHHSS---SSEEEEEECCTTSCHHHH
T ss_pred CCHHHHHHHHHHhcC---CCCeEEEECCCCCCccHH
Confidence 577887777776632 234799999999999964
No 234
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.05 E-value=0.035 Score=53.96 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+..++|.|++|+||||+.+.+.+.++..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 467999999999999999999999986543
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.03 E-value=0.032 Score=50.95 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..+.|.||+|+||||+++.++..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998764
No 236
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.03 E-value=0.69 Score=48.11 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=28.3
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccC-CCcEEEEEEeCCCccc
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILK-MPEVGMIFISSTSPDT 237 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~-~~~l~vI~Is~~~~~~ 237 (535)
..-+|||||+|++.++. ....+.++.+... .++..+++.|.+.+..
T Consensus 203 ~~~~lVlDEah~~~~~g----f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~ 249 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMG----FSEDMRRIMTHVTMRPEHQTLMFSATFPEE 249 (434)
T ss_dssp TCCEEEEETHHHHTSTT----THHHHHHHHHCTTSCSSCEEEEEESCCCHH
T ss_pred cCCeEEEccHhhhhccC----cHHHHHHHHHhcCCCCCceEEEEeccCCHH
Confidence 45688999999997642 3333434333321 2457788888886543
No 237
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.96 E-value=0.057 Score=56.40 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=26.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.++|.|+||+||||+++.+++.++ +.+|+....
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~ 292 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL 292 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGT--CEECCGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--cEEEccchH
Confidence 378999999999999999999886 445565444
No 238
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.93 E-value=0.044 Score=52.83 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=30.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC--------eEEEeccccC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRP--------FVYTSCLSCY 118 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~--------~~yVnc~~~~ 118 (535)
.|.|.|++|+||||+.+.+.+.++.+ .+.+++...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 47899999999999999999988865 4467877765
No 239
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.92 E-value=0.038 Score=51.01 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.+.|.|++|+||||+.+.+.+.+++++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~ 30 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPY 30 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 578999999999999999999998544
No 240
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.87 E-value=0.26 Score=52.11 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=33.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccC-CHHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCY-SPRILFESIL 128 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~-s~r~l~~~Il 128 (535)
+..+.|+|++|+|||+++..++... +.-.+|+.+-+.. +.+.+++.+.
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 3468999999999999999888654 2445666666653 4455665554
No 241
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.85 E-value=0.038 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.+.|.|++|+||||+.+.+.. ++.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~ 29 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPL 29 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcc
Confidence 367999999999999999977 77554
No 242
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.78 E-value=0.48 Score=47.79 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=32.9
Q ss_pred CCCHHHHhh-cCC-ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHH-HHHHHhc
Q 009415 50 PISLDDLLS-RFP-GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL 105 (535)
Q Consensus 50 ~~~~~~l~~-~~p-~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v-~~vl~~l 105 (535)
+...+.+.+ .+. -|..|...+..++.. .+++|.+|+|+|||.+. ..++..+
T Consensus 17 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~~~~l 70 (391)
T 1xti_A 17 PELLRAIVDCGFEHPSEVQHECIPQAILG-----MDVLCQAKSGMGKTAVFVLATLQQL 70 (391)
T ss_dssp HHHHHHHHHHSCCSCCHHHHHHHHHHTTT-----CCEEEECSSCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC-----CcEEEECCCCCcHHHHHHHHHHHhh
Confidence 334444433 233 578888777666543 47999999999999654 4444444
No 243
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.74 E-value=0.043 Score=53.12 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
+..+.|.||+|+||||+++.+.+.|+..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 34688999999999999999999998644
No 244
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.52 E-value=0.041 Score=51.43 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC----CCeEEEe
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS----RPFVYTS 113 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~----~~~~yVn 113 (535)
+..++|.|++|+||||+++.+.+.++ .++++++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 34688999999999999999998774 5677776
No 245
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.49 E-value=0.046 Score=60.02 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.++|.|+||||||+++..++..+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999999888765
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.47 E-value=0.046 Score=51.13 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=22.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..++|.||+|+||||+++.+++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998764
No 247
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.47 E-value=0.11 Score=53.06 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~ 116 (535)
+.+..++...+.+.....+.+.|.|+||+||||++..++..+ +.+++.+++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 62 REQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp HHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred HHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 344555555554433344568899999999999999998765 67777787763
No 248
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.45 E-value=0.33 Score=56.38 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHH
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF 102 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl 102 (535)
.=+..|...+..++.. ..++|.||+|+|||.+....+
T Consensus 39 ~l~~~Q~~aI~~il~g-----~~vlv~apTGsGKTlv~~~~i 75 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-----DSVFVAAHTSAGKTVVAEYAI 75 (997)
T ss_dssp CCCHHHHHHHHHHHTT-----CEEEEECCTTSCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-----CCEEEEECCCCcHHHHHHHHH
Confidence 3467787777666543 479999999999997644444
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.44 E-value=0.048 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.688 Sum_probs=21.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+.|.||+|+||||+++.++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999998764
No 250
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.43 E-value=0.047 Score=50.78 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=26.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.+.|.|++|+||||+.+.+.+.++++ +|++...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~--vid~D~~ 46 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAH--VVNVDRI 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE--EEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE--EEECcHH
Confidence 47799999999999999999988754 4565543
No 251
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.42 E-value=0.046 Score=52.53 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=23.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRP 108 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~ 108 (535)
.+.|.||+|+||||+.+.+.+.++..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58899999999999999999999844
No 252
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.42 E-value=0.047 Score=50.17 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=24.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~ 115 (535)
.+.|.|++|+||||+.+.+.+. +.+ ++++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~--~id~d 39 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYP--VLDLD 39 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCC--EEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCE--EEccc
Confidence 4889999999999999999987 644 45544
No 253
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.42 E-value=0.39 Score=51.55 Aligned_cols=48 Identities=17% Similarity=0.379 Sum_probs=30.0
Q ss_pred CcEEEEEEeCCcccccccCCCChHHHHHccccccC-CCcEEEEEEeCCCcc
Q 009415 187 GKMIYLIFDNFELVREWDKSSSILPFLFGLSDILK-MPEVGMIFISSTSPD 236 (535)
Q Consensus 187 ~~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~-~~~l~vI~Is~~~~~ 236 (535)
...-+|||||+|.+.+|. .++-+.+.++..+.. .+++.+|+.|.+++.
T Consensus 138 ~~~~~vViDEaH~i~~~g--~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 186 (523)
T 1oyw_A 138 WNPVLLAVDEAHCISQWG--HDFRPEYAALGQLRQRFPTLPFMALTATADD 186 (523)
T ss_dssp SCEEEEEESSGGGGCTTS--SCCCHHHHGGGGHHHHCTTSCEEEEESCCCH
T ss_pred CCCCEEEEeCccccCcCC--CccHHHHHHHHHHHHhCCCCCEEEEeCCCCH
Confidence 356789999999998764 333333333332211 356778888888644
No 254
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.41 E-value=0.058 Score=55.12 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=34.0
Q ss_pred CHHHHhhc--CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhc
Q 009415 52 SLDDLLSR--FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHL 105 (535)
Q Consensus 52 ~~~~l~~~--~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l 105 (535)
.++.+.+. -.-|..|...+-.++.. ...+++|.+|+|+|||.+ +..+++.+
T Consensus 36 l~~~l~~~g~~~~~~~Q~~~i~~~~~~---~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 36 LLQGVYAMGFNRPSKIQENALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHSS---SCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcC---CCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 44444432 23477888777776654 235799999999999966 45556555
No 255
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.40 E-value=0.04 Score=55.86 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=27.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
+.++|.||+|+|||++...+++.++.. +||++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~e--iIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLE--VINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEE--EEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCc--EEcccc
Confidence 358999999999999999999998744 455544
No 256
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.39 E-value=0.032 Score=51.81 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
..|+|.|++|+||||+++.+.+.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35889999999999999999998763
No 257
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.38 E-value=0.069 Score=59.59 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHH-HHHHHhc---CCCeEEE
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL---SRPFVYT 112 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v-~~vl~~l---~~~~~yV 112 (535)
-+..|...+...+.. ..+++|.||+|+|||+++ ..+++.+ +.+.+|+
T Consensus 31 l~~~Q~~~i~~~~~~----~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i 81 (715)
T 2va8_A 31 LNPPQTEAVKKGLLE----GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYV 81 (715)
T ss_dssp CCHHHHHHHHTTTTT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEE
T ss_pred CCHHHHHHHHHHhcC----CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEE
Confidence 366676666542322 468999999999999877 4444433 3444444
No 258
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.31 E-value=0.034 Score=51.68 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..|+|.|++|+||||+++.+.+.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999875
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.30 E-value=0.045 Score=50.48 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+..+.|.|++|+||||+++.+...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999877
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.26 E-value=0.053 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..+.|.||+|+||||+++.++..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.25 E-value=0.045 Score=50.15 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=23.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.+.|.||+|+||||+++.++..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 367999999999999999999887443
No 262
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.21 E-value=0.083 Score=48.15 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=28.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCL 115 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~ 115 (535)
++.+.|.|++|+||||++..++..+ +.++..|.+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4568899999999999999999876 4677777654
No 263
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.15 E-value=0.82 Score=46.97 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=30.6
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.=|..|..-+..++.. .++|.+|+|+|||.++-.++...
T Consensus 7 ~~~l~~~Q~~~i~~~~~~------~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET------NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS------CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhC------CEEEEcCCCCCHHHHHHHHHHHH
Confidence 345577888777666543 78999999999998777776543
No 264
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.13 E-value=0.76 Score=46.83 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHH
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFR 103 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~ 103 (535)
.-+.-|...+-.++.. .+++|.+|+|+|||.+ +..++.
T Consensus 37 ~~~~~Q~~~i~~i~~~-----~~~lv~a~TGsGKT~~~~~~~l~ 75 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEK-----RDLMACAQTGSGKTAAFLLPILS 75 (417)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccC-----CCEEEEcCCCCHHHHHHHHHHHH
Confidence 4466777766655543 5799999999999964 333443
No 265
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.08 E-value=0.078 Score=53.81 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=28.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
.++|.||+|+|||+++..+.+.++ ...|+++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 478999999999999999999997 456676654
No 266
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.07 E-value=0.17 Score=47.81 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=22.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
-.+++|+.|+|||+.+...+... +.+++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36699999999997777766554 45666665
No 267
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.07 E-value=0.47 Score=50.42 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=26.3
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHH
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF 102 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl 102 (535)
+.=|.-|...+..++.. .+++|.+|+|+|||.+.-..+
T Consensus 6 ~~~~~~Q~~~i~~~~~~-----~~~l~~~~tGsGKT~~~~~~~ 43 (556)
T 4a2p_A 6 KKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILIC 43 (556)
T ss_dssp --CCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-----CCEEEEcCCCChHHHHHHHHH
Confidence 34466777777666643 479999999999996654444
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.06 E-value=0.054 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=22.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+..+.|.||+|+||||+++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34688999999999999999998764
No 269
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.05 E-value=0.04 Score=57.21 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
.++|.||+|+|||+++..+++.++.. .|++..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~--iis~Ds 35 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGE--VINSDS 35 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEE--EEECCT
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCe--EeecCc
Confidence 47899999999999999999998743 466543
No 270
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.96 E-value=0.63 Score=50.36 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI 97 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~ 97 (535)
-|..|...+-.++.. ....+++.+|+|+|||.+
T Consensus 44 ~~~~Q~~~i~~il~~---~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 44 LTPVQQKTIKPILSS---EDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp CCHHHHHHHHHHHCS---SSEEEEEECCTTSCHHHH
T ss_pred CCHHHHHHHHHHHcc---CCCeEEEEcCCCcHHHHH
Confidence 578888888777732 134799999999999964
No 271
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.90 E-value=0.049 Score=49.66 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVn 113 (535)
..++|.|++|+||||+++.+.+.++ .++.+++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3588999999999999999998874 4456665
No 272
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.84 E-value=0.061 Score=49.08 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.+.|.||+|+||||+++.+...++ ..++++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD-NSAYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-SEEEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccC-CeEEEcc
Confidence 467999999999999999987654 2355653
No 273
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.81 E-value=0.085 Score=48.93 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=28.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccccC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSCY 118 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~~ 118 (535)
.+.|.|++|+||||+++.+.+.+. .+.+|++....
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~-~~~~i~~D~~~ 57 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP-NCSVISQDDFF 57 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST-TEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-CcEEEeCCccc
Confidence 477999999999999999998773 35677766553
No 274
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.78 E-value=0.081 Score=49.44 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=24.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.+.|.|++|+||||+.+.+.+.+++++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~ 31 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIY 31 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 588999999999999999999998543
No 275
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.67 E-value=0.072 Score=49.87 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=23.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.+.|.|++|+||||+++.+.+ ++. .++++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~--~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGI--NVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTC--EEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCC--EEEEc
Confidence 478999999999999999877 764 44554
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.67 E-value=0.067 Score=49.69 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=27.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
.+-|.|++|+||||+++.+...++..+.||....
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~ 41 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGERVALLPMDH 41 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence 4779999999999999999998764466676544
No 277
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.61 E-value=0.078 Score=50.48 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
..+.|.|++|+||||+.+.+.+.+++++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~ 44 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTY 44 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCce
Confidence 3588999999999999999999998543
No 278
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.48 E-value=0.074 Score=50.48 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+..+.|.||+|+||||+++.++..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 44688999999999999999998764
No 279
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.40 E-value=0.094 Score=55.32 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHH-HHHHHHhcC
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSI-IIQVFRHLS 106 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~-v~~vl~~l~ 106 (535)
+.-|...+-.++.. ...++++.||+|+|||.+ +..++..+.
T Consensus 116 ~~~Q~~ai~~il~~---~~~~~l~~a~TGsGKT~~~~l~il~~l~ 157 (479)
T 3fmp_B 116 SKIQENALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (479)
T ss_dssp CHHHHHHHHHHTSB---SCCEEEEECCSSSSHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHcC---CCCcEEEEcCCCCchhHHHHHHHHHHHh
Confidence 44466666555543 235799999999999966 566666653
No 280
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.35 E-value=0.25 Score=55.69 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009415 66 QILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 66 qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
|...+...+.. ...++|.||+|+|||+++..++-.
T Consensus 98 q~~~i~~~l~~----~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 98 QRDEFLKLYQN----NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp GHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 33444444444 346999999999999977777543
No 281
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.35 E-value=0.19 Score=53.94 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=38.9
Q ss_pred ccCCCCCHHHHhhcCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEe
Q 009415 46 FGQEPISLDDLLSRFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTS 113 (535)
Q Consensus 46 f~~~~~~~~~l~~~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVn 113 (535)
|...+..+.++.+.=..-...+..|.-.+.. +.++.|.||+|+||||++++++..+. ...+.|.
T Consensus 229 ~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~----g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 229 FTIEPLTPIDLIEKGTVPSGVLAYLWLAIEH----KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CCCCCCCHHHHHHTTSSCHHHHHHHHHHHHT----TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred cCCCCCChhhHHhcCCCCHHHHHHHHHHHhC----CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 3334444555543211223444444443433 45699999999999999999998875 3344443
No 282
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.29 E-value=0.093 Score=49.01 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=25.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+.|.|.|++|+|||++.+.+.+.|+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 35889999999999999999999997764
No 283
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.21 E-value=0.053 Score=53.77 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=27.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccccC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLSCY 118 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~~~ 118 (535)
.|.|.|++|+||||+++.+.+.++ ..+.+|++...+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 477999999999999999998765 567888888876
No 284
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.15 E-value=0.097 Score=48.20 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC 117 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~ 117 (535)
++|+|++|+|||+.+..++.. +.+.+||.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888999986553
No 285
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.11 E-value=0.077 Score=52.26 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=24.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc 114 (535)
.++|.|+||+||||+++.+.+.+ ..+.+|+.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~-~~~~~i~~ 34 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN-PGFYNINR 34 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS-TTEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCcEEecc
Confidence 47899999999999999999864 13455554
No 286
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.81 E-value=0.26 Score=48.80 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=30.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC-----CeEEE-eccccCCHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSR-----PFVYT-SCLSCYSPRILFE 125 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~-----~~~yV-nc~~~~s~r~l~~ 125 (535)
.+.|.|++|+||||+++.+...++. ..+.+ .....+-.....+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~ 81 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQL 81 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHH
Confidence 3779999999999999999988752 34444 7666554443333
No 287
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.81 E-value=0.29 Score=48.07 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=33.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCCHHHHHHHHHH
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYSPRILFESILN 129 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s~r~l~~~Il~ 129 (535)
++..+.|.|++|+||||+++.++..+ +.+++|++... +...+..+++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC--CHHHHHHHHHH
Confidence 44568899999999999999998765 34677777532 34444444443
No 288
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.79 E-value=0.11 Score=48.94 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=22.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+..+.|.||+|+||||+++.++..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568899999999999999999876
No 289
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.79 E-value=0.12 Score=57.68 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHH-HHHHHhc---CCCeEEEe
Q 009415 62 GRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSII-IQVFRHL---SRPFVYTS 113 (535)
Q Consensus 62 ~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v-~~vl~~l---~~~~~yVn 113 (535)
-+..|...+...+.. ..+++|.||+|+|||.+. ..+++.+ +.+.+|+-
T Consensus 24 l~~~Q~~~i~~~~~~----~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 24 FYPPQAEALKSGILE----GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp CCHHHHHHHTTTGGG----TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCHHHHHHHHHHhcC----CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 356665555442222 357999999999999776 4444433 44555553
No 290
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.76 E-value=0.19 Score=55.93 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=28.0
Q ss_pred cEEEEEEeCCcccccccCCCChHHHH-HccccccCCCcEEEEEEeCCCc
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFL-FGLSDILKMPEVGMIFISSTSP 235 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L-~rL~E~~~~~~l~vI~Is~~~~ 235 (535)
..-+||+||+|.+.+++. ...+..+ .++... .+++.+|+.|.+.+
T Consensus 138 ~~~~vIiDE~H~l~~~~r-~~~~~~ll~~l~~~--~~~~~ii~lSATl~ 183 (702)
T 2p6r_A 138 AVSCLVVDEIHLLDSEKR-GATLEILVTKMRRM--NKALRVIGLSATAP 183 (702)
T ss_dssp GCCEEEETTGGGGGCTTT-HHHHHHHHHHHHHH--CTTCEEEEEECCCT
T ss_pred hcCEEEEeeeeecCCCCc-ccHHHHHHHHHHhc--CcCceEEEECCCcC
Confidence 345888999999976432 2233333 334333 24689999998864
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.66 E-value=0.098 Score=47.82 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=26.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc 114 (535)
.+.+.|.|++|+||||+++.++..+ +.+...|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 4568899999999999999999875 355666654
No 292
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.58 E-value=0.074 Score=50.44 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=27.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHH--h--cCCCeEEEeccc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFR--H--LSRPFVYTSCLS 116 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~--~--l~~~~~yVnc~~ 116 (535)
++..+.|.||+|+||||+++.++. . -+...+|++...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 445688999999999999998883 2 245667776543
No 293
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.62 Score=54.15 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHH-hc--CCCeEEEe
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFR-HL--SRPFVYTS 113 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~-~l--~~~~~yVn 113 (535)
.=+..|...+..++.. .+++|.+|+|+|||.+....+. .+ +.+.+|+-
T Consensus 86 ~L~~~Q~eai~~l~~g-----~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~ 136 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRG-----ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS 136 (1010)
T ss_dssp CCCHHHHHHHHHHHHT-----CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHcC-----CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEEC
Confidence 3567787777776543 4799999999999987544333 22 34455543
No 294
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.34 E-value=0.21 Score=50.97 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
.++++|.|++|+||||+.+.+...++.+++
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f~ 53 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKYH 53 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 356999999999999999999998875543
No 295
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.27 E-value=0.38 Score=51.29 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=27.9
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCCcc
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTSPD 236 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~~~ 236 (535)
..-+||+||+|.+.+. ......+.++....+ ++..+|+.|.++++
T Consensus 259 ~~~lIIiDEaH~~~~~---~~~~~~~~~i~~~~~-~~~~~i~lSAT~~~ 303 (508)
T 3fho_A 259 DIKVFVLDEADNMLDQ---QGLGDQSMRIKHLLP-RNTQIVLFSATFSE 303 (508)
T ss_dssp TCCEEEECCHHHHTTC-----CHHHHHHHHHHSC-TTCEEEEEESCCST
T ss_pred CCCEEEEechhhhccc---CCcHHHHHHHHHhCC-cCCeEEEEeCCCCH
Confidence 4558889999998641 123333334444432 46788999988754
No 296
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.20 E-value=0.047 Score=50.70 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=21.4
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+.|.|++|+||||+++.+.+.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999885
No 297
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.18 E-value=0.28 Score=46.84 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=29.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCH
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSP 120 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~ 120 (535)
++|+.|++|+|||+++..+...+ |.+++.+.+....+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 59999999999999988877664 677877887664443
No 298
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.15 E-value=0.13 Score=47.90 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+..+.|.||+|+||||+++.++..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44688999999999999999998774
No 299
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.93 E-value=0.12 Score=50.89 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=24.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCeEEEeccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLS 116 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~ 116 (535)
.|.|.|++|+||||+.+.+. .+++ .+|++..
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~--~~id~D~ 107 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGA--YIIDSDH 107 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTC--EEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCC--cEEehhH
Confidence 37899999999999999998 5765 4466543
No 300
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.89 E-value=0.13 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..++|.|++|+||||+++.+.+.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999886
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.87 E-value=0.18 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.3
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
..++|.|++|+||||++..++..-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999998754
No 302
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=90.87 E-value=1.3 Score=51.95 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHH-hc--CCCeEEE
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFR-HL--SRPFVYT 112 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~-~l--~~~~~yV 112 (535)
|.=+.-|...+..++. ...++|.||+|+|||.+....+- .+ +...+|+
T Consensus 183 f~ltp~Q~~AI~~i~~-----g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl 233 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR-----GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYT 233 (1108)
T ss_dssp SCCCHHHHHHHHHHTT-----TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHc-----CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEE
Confidence 3446777777766533 35799999999999977554443 32 3444444
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.78 E-value=0.24 Score=51.75 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+...|..++.. +...+.|.||+|+||||+++.++..+.
T Consensus 154 ~~~~~L~~l~~~---~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 154 HNHDNFRRLIKR---PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHHHHHHTS---SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 344444444422 345688999999999999999998875
No 304
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.77 E-value=0.15 Score=48.85 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.1
Q ss_pred eEEECCCCCCHHHHHHHHHHhcCCCeE
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLSRPFV 110 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~~~~~ 110 (535)
+-|.|+||+||||+.+.+.+.++++++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 568999999999999999999987664
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.63 E-value=0.21 Score=44.74 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
++..+.|.||.|+||||+++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468899999999999999999887
No 306
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.45 E-value=0.22 Score=46.51 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 63 RRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 63 Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.+...+...+.. ...+.+.|.|.+|+||||++..++..+
T Consensus 22 ~~~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 22 NKRLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35555566555543 234558889999999999999999875
No 307
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.36 E-value=0.13 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+..+.|.||+|+||||+++.++..+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 45688999999999999999998653
No 308
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.30 E-value=0.16 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
...|+|+.|+|||++++++.-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999987764
No 309
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.25 E-value=0.35 Score=50.87 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=37.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHH
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQL 131 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L 131 (535)
.++..++|.|+||+|||+++.+++.+. +.+++|+++-. +...+..+++...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm--s~~ql~~R~~~~~ 248 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM--GKKENIKRLIVTA 248 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS--CTTHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC--CHHHHHHHHHHHH
Confidence 445568999999999999999888664 56788888643 4455666666554
No 310
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.24 E-value=0.38 Score=48.00 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhccC-----CCCC-CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 65 VQILELLRLLGTLN-----SSMP-PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 65 ~qi~~L~~ll~~~~-----~~~~-~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
.-.++|..++++.. ...+ .+.|.|++|+||||++..++..+ +.++..++|...
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 34455666665532 1122 37799999999999999998765 456777777643
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.16 E-value=0.11 Score=49.29 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=15.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHH-Hhc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVF-RHL 105 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl-~~l 105 (535)
+..+.|.||+|+||||+++.++ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3457899999999999999999 765
No 312
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.11 E-value=0.21 Score=46.38 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEecc
Q 009415 64 RVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCL 115 (535)
Q Consensus 64 e~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~ 115 (535)
++....+...+... ..+.+.|.|.+|+||||++..++..+. .+...|.+.
T Consensus 15 ~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 15 KRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 44455555554331 345688999999999999999998764 345566544
No 313
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.02 E-value=0.2 Score=53.72 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
+..|.+-.+.|.....+....+..|+|.|.+|+||||+.+.+.+.|+.
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 445555566666654332233446999999999999999999999974
No 314
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.95 E-value=0.35 Score=50.65 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=36.6
Q ss_pred HHHHHHHhcc---C--C--CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 68 LELLRLLGTL---N--S--SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 68 ~~L~~ll~~~---~--~--~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
.+|..+++.. . . .+..+.|.|++|+||||++..++..+ +.++.+|+|...
T Consensus 79 ~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp HHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred HHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3456666543 1 1 12358899999999999999998766 478889998754
No 315
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.92 E-value=0.41 Score=45.62 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=18.8
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
..|+|.|++|+||||+++.+.+.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999887
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.91 E-value=0.14 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=18.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVF 102 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl 102 (535)
+..+.|.||+|+||||+++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3457899999999999999744
No 317
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.91 E-value=0.17 Score=46.55 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=22.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
..+|+|++|+||||++..++..+ +.++.++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999987766553 44555553
No 318
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.89 E-value=0.21 Score=54.78 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=28.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
.|+|.|.+|+||||+++.+.+.| +.+++.++
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 48899999999999999999998 88888775
No 319
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.81 E-value=0.2 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.|.|++|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999876
No 320
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.71 E-value=0.27 Score=49.64 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=25.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEeccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCLS 116 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~~ 116 (535)
.+.|.||+|+||||+++.++..+. -.+.++.+..
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 477999999999999999987653 3444555443
No 321
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.68 E-value=0.16 Score=44.16 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
+.+.|.|++|+||||++..++..-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998653
No 322
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.68 E-value=0.19 Score=47.80 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=24.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCCCe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSRPF 109 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~~~ 109 (535)
.|.|.|++|||||++.+.+.+.+++++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 477999999999999999999999665
No 323
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.68 E-value=0.27 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.6
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.++..+.|.||+|+||||+++.++..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345568899999999999999999887
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.63 E-value=0.31 Score=49.06 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=27.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccC
Q 009415 84 LFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCY 118 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l~-----~~~~yVnc~~~~ 118 (535)
+-|.||+|+||||+++.+...++ .....|.....+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 66999999999999999988775 245666665544
No 325
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.50 E-value=0.25 Score=53.73 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC----CCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS----RPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~----~~~~yVnc 114 (535)
.|+|.|++|+||||+.+.+.+.|+ .++.+++.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 488999999999999999999886 66777763
No 326
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.47 E-value=0.092 Score=49.77 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=25.5
Q ss_pred cEEEEEEeCCcccccccCCCChHHHHHccccccCCCcEEEEEEeCCC
Q 009415 188 KMIYLIFDNFELVREWDKSSSILPFLFGLSDILKMPEVGMIFISSTS 234 (535)
Q Consensus 188 ~~~vlVLDe~d~L~~~d~~~~lL~~L~rL~E~~~~~~l~vI~Is~~~ 234 (535)
+.-+|++||++-+. .+++..+.++.+. ++.||.-+-+.
T Consensus 101 ~~dvV~IDEaQFf~-----~~~v~~l~~la~~----gi~Vi~~GLd~ 138 (219)
T 3e2i_A 101 NVDVIGIDEVQFFD-----DEIVSIVEKLSAD----GHRVIVAGLDM 138 (219)
T ss_dssp TCSEEEECCGGGSC-----THHHHHHHHHHHT----TCEEEEEEESB
T ss_pred CCCEEEEechhcCC-----HHHHHHHHHHHHC----CCEEEEeeccc
Confidence 34588999999884 3567777666542 56677665544
No 327
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.43 E-value=0.16 Score=51.99 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
...+.|.||+|+||||+++.++..+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 34789999999999999999998763
No 328
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.36 E-value=0.22 Score=46.16 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.++|.|++|+|||+++..++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999999764
No 329
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=89.36 E-value=0.63 Score=48.94 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=30.1
Q ss_pred CCCeEEECCCCCCHHHH-HHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 81 MPPLFVYGSASTGKTSI-IIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~-v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
...++|.||+|+|||.+ +..+++.+ +...+++- . .+.|-..+...+.+
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~----P-tr~La~Q~~~~l~g 72 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLA----P-TRVVAAEMAEALRG 72 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEE----C-SHHHHHHHHHHTTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEC----c-hHHHHHHHHHHhcC
Confidence 45799999999999976 56666543 34444443 1 23355555655543
No 330
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.33 E-value=0.29 Score=45.85 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=21.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.++|.||+|+|||+++..+++...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 488999999999999999998865
No 331
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.32 E-value=0.58 Score=46.91 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=28.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~ 117 (535)
.+.|.|++|+||||++..++..+ +-++..++|...
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 37799999999999999988665 567778887653
No 332
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=89.29 E-value=1.9 Score=48.65 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHH
Q 009415 59 RFPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF 102 (535)
Q Consensus 59 ~~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl 102 (535)
.+.=|..|...+..++.. .+++|.+|+|+|||.+.-..+
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-----~~~ll~~~TGsGKTl~~~~~i 284 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILIC 284 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC-----CCEEEEeCCCChHHHHHHHHH
Confidence 455678888887776643 479999999999996655444
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.06 E-value=0.46 Score=47.10 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=30.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s 119 (535)
.+.+.|++|+||||++..++..+ +.++.+++|.....
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 46788999999999999998765 56788888876543
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.89 E-value=0.22 Score=47.55 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=27.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC--------CeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSR--------PFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~--------~~~yVnc~~~ 117 (535)
.+-|.||.|+||||+++.+...++. ...|+.....
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 4679999999999999999988763 3457765543
No 335
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.77 E-value=0.6 Score=49.88 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=37.2
Q ss_pred HHHHHHHhccCC-------CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccccCC
Q 009415 68 LELLRLLGTLNS-------SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLSCYS 119 (535)
Q Consensus 68 ~~L~~ll~~~~~-------~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~~~s 119 (535)
.+|..++++... .+..+.|.|++|+||||++..++..+ +.+++.|+|.....
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 456677765311 12247789999999999999999765 67888898866543
No 336
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=88.70 E-value=1.3 Score=46.09 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=21.7
Q ss_pred CCeEEECCCCCCHHHHH-HHHHHh---cCCCeEEEe
Q 009415 82 PPLFVYGSASTGKTSII-IQVFRH---LSRPFVYTS 113 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v-~~vl~~---l~~~~~yVn 113 (535)
.+++|.||+|+|||.+. ..+++. -+...+++-
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 46899999999999764 555533 234555543
No 337
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.50 E-value=0.24 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
..+|+||.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999987544
No 338
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.45 E-value=0.25 Score=47.02 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=22.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.++|.|++|+||||+++.+.+.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999984
No 339
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.28 E-value=0.28 Score=42.58 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 340
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.25 E-value=0.26 Score=46.47 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=24.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYT 112 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yV 112 (535)
.|.|.|++|+||||+++.+.+.++ ..++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 578999999999999999988874 455433
No 341
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.20 E-value=0.28 Score=42.80 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 342
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.03 E-value=0.29 Score=42.70 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 343
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.94 E-value=0.26 Score=42.66 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 344
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.93 E-value=0.3 Score=43.17 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 345
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.93 E-value=0.27 Score=50.14 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=27.5
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEe
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTS 113 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVn 113 (535)
++..+.|.||+|+||||+++.++..+. ...+.++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 356899999999999999999998875 3445555
No 346
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.90 E-value=0.23 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
+..+.|.||+|+||||+++.++..+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44688999999999999999998763
No 347
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.88 E-value=0.63 Score=46.94 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=28.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~ 116 (535)
.+..+.|.|++|+||||++..++..+ +.++..+++.-
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 44568899999999999999998664 55666666543
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.84 E-value=0.32 Score=42.99 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.0
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
...+.|.|++|+||||++..++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 349
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.84 E-value=2 Score=50.55 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=30.2
Q ss_pred HHHhhcCCC--hHHHHHHHHHHHhccC-CCCCCeEEECCCCCCHHHHHH
Q 009415 54 DDLLSRFPG--RRVQILELLRLLGTLN-SSMPPLFVYGSASTGKTSIII 99 (535)
Q Consensus 54 ~~l~~~~p~--Re~qi~~L~~ll~~~~-~~~~~l~I~G~~GTGKTs~v~ 99 (535)
+.+...|+. |..|...+..++..-. +.+..++|.|+.|+|||.+.-
T Consensus 594 ~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val 642 (1151)
T 2eyq_A 594 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 642 (1151)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHH
Confidence 344444433 8888888877765321 122369999999999996544
No 350
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.79 E-value=0.44 Score=47.25 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=29.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc----CCCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~ 117 (535)
.+.|.|++|+||||++..++..+ |.++.++.|...
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47799999999999999998654 467888888764
No 351
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.76 E-value=0.3 Score=42.45 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 352
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.75 E-value=0.29 Score=46.25 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=26.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEE
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYT 112 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yV 112 (535)
+..|+|.|++|+||||+++.+.+.++.....+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 34688999999999999999999998644333
No 353
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.75 E-value=0.3 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||++++.++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999854
No 354
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.74 E-value=0.3 Score=42.64 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.|.|++|+||||+++.++..-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998653
No 355
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.73 E-value=0.3 Score=44.61 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||+++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999975
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.73 E-value=0.44 Score=47.60 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=27.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC-----CCeEEEeccccC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS-----RPFVYTSCLSCY 118 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~-----~~~~yVnc~~~~ 118 (535)
.+-|.|++|+||||+++.+...+. ....+|.-...+
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~ 132 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL 132 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence 477999999999999999998764 246677654443
No 357
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.70 E-value=0.31 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.68 E-value=0.3 Score=42.74 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999865
No 359
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.60 E-value=0.27 Score=47.04 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 445688999999999999999987664
No 360
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=87.59 E-value=0.55 Score=49.30 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=28.1
Q ss_pred CCeEEECCCCCCHHHH-HHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHhh
Q 009415 82 PPLFVYGSASTGKTSI-IIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLLL 133 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~-v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~~ 133 (535)
..+++.||+|+|||.. +..++.++ +...+++- . .+.|-+.+...+.+
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~----P-tr~La~Q~~~~l~g 70 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILA----P-TRVVAAEMEEALRG 70 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEE----S-SHHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEEC----C-CHHHHHHHHHHhcC
Confidence 3469999999999973 55555432 33444443 1 23355556666543
No 361
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.55 E-value=0.49 Score=45.14 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=28.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc--CCCeEEEeccc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL--SRPFVYTSCLS 116 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l--~~~~~yVnc~~ 116 (535)
..+++.|.+|+||||++..++..+ +.+++.|++..
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 347899999999999999998766 56777887653
No 362
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.48 E-value=0.33 Score=42.28 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||+++.++..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.44 E-value=0.67 Score=46.01 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=26.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC--C---CeEEEeccccC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS--R---PFVYTSCLSCY 118 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~--~---~~~yVnc~~~~ 118 (535)
.+-|.|++|+||||+++.+...++ . .+.+|++....
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 477999999999999999998765 1 24455555443
No 364
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.37 E-value=0.3 Score=44.47 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.|.|++|+||||+++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 365
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.36 E-value=0.51 Score=46.92 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=25.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC--CCeEEEecccc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSCLSC 117 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc~~~ 117 (535)
.+.|.||+|+||||+++.++..+. -.-+.+++...
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 477999999999999999997753 22344444333
No 366
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.36 E-value=0.32 Score=42.54 Aligned_cols=22 Identities=23% Similarity=0.620 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 367
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.34 E-value=0.25 Score=53.51 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 61 PGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 61 p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..|.+-.+.+..........+..++|.|++|+||||+.+.+...++
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3444444444433221122344688999999999999999999885
No 368
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.31 E-value=0.31 Score=42.61 Aligned_cols=22 Identities=14% Similarity=0.554 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999854
No 369
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.26 E-value=0.33 Score=42.90 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||+++.++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.21 E-value=0.36 Score=42.04 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=19.2
Q ss_pred eEEECCCCCCHHHHHHHHHHh
Q 009415 84 LFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~ 104 (535)
+.|.|++|+|||+++..++..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 371
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.21 E-value=0.46 Score=51.05 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=26.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEecc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSCL 115 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc~ 115 (535)
.|++.|.||+||||+.+.+.+.++ +....+|..
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 488999999999999999998874 555556643
No 372
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=87.16 E-value=0.77 Score=50.36 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=29.0
Q ss_pred CCCeEEECCCCCCHHHH-HHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009415 81 MPPLFVYGSASTGKTSI-IIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLL 132 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~-v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~ 132 (535)
...+++.+|+|||||++ +..++..+ +...+++. .+ +.|-..+...+.
T Consensus 186 g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~----Pt-reLa~Qi~~~l~ 236 (618)
T 2whx_A 186 KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILA----PT-RVVAAEMEEALR 236 (618)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE----SS-HHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEc----Ch-HHHHHHHHHHhc
Confidence 45799999999999976 45555443 33444443 12 345555666654
No 373
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.16 E-value=0.35 Score=42.16 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 374
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.05 E-value=0.37 Score=42.59 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999854
No 375
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.00 E-value=0.54 Score=44.44 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCeEEECCCCCCHHHHHHHHH
Q 009415 82 PPLFVYGSASTGKTSIIIQVF 102 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl 102 (535)
..++|.|++|+|||+++...+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 579999999999998766655
No 376
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.95 E-value=0.19 Score=48.50 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=22.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..|+|.|++|+||||+++.+.+.++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3588999999999999999999984
No 377
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.82 E-value=0.31 Score=46.61 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
++..+.|.||.|+||||+++.++..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998765
No 378
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.80 E-value=0.36 Score=42.27 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=18.9
Q ss_pred CeEEECCCCCCHHHHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFR 103 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~ 103 (535)
.+.|.|++|+|||+++..++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999874
No 379
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=86.78 E-value=1.7 Score=48.11 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=29.3
Q ss_pred CCCeEEECCCCCCHHHH-HHHHHHhc---CCCeEEEeccccCCHHHHHHHHHHHHh
Q 009415 81 MPPLFVYGSASTGKTSI-IIQVFRHL---SRPFVYTSCLSCYSPRILFESILNQLL 132 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~-v~~vl~~l---~~~~~yVnc~~~~s~r~l~~~Il~~L~ 132 (535)
..+++|.||+|+|||.+ +..+++.+ +...+++. .| +.|-..+...+.
T Consensus 241 g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lila----PT-r~La~Q~~~~l~ 291 (673)
T 2wv9_A 241 RQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLA----PT-RVVAAEMAEALR 291 (673)
T ss_dssp TCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEE----SS-HHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEc----cH-HHHHHHHHHHHh
Confidence 45799999999999976 56666543 34455443 22 334555555554
No 380
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.73 E-value=1.1 Score=46.96 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred HHHHHHHHhccC-----C-CCC-CeEEECCCCCCHHHHHHHHHHhc----CCCeEEEeccccCC
Q 009415 67 ILELLRLLGTLN-----S-SMP-PLFVYGSASTGKTSIIIQVFRHL----SRPFVYTSCLSCYS 119 (535)
Q Consensus 67 i~~L~~ll~~~~-----~-~~~-~l~I~G~~GTGKTs~v~~vl~~l----~~~~~yVnc~~~~s 119 (535)
.++|..++++.. . ..+ .+.|.|++|+||||++..++..+ +.++..|+|.....
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 345666776531 1 122 47788999999999999988654 67889999986543
No 381
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.73 E-value=0.31 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.2
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
...+.|.|++|+||||++..++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999864
No 382
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.70 E-value=0.38 Score=43.26 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999976
No 383
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.68 E-value=0.31 Score=43.91 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=19.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
-+.|.|++|+||||+++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 384
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.65 E-value=0.35 Score=42.66 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999854
No 385
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.64 E-value=0.36 Score=45.51 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445688999999999999999987654
No 386
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.62 E-value=0.39 Score=42.35 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.|.|++|+||||++..++..-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.56 E-value=0.39 Score=42.94 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 388
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.50 E-value=0.29 Score=46.35 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344678999999999999999987664
No 389
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.49 E-value=0.36 Score=46.33 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..|.|.|++|+||||+++.+.+.++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999988774
No 390
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.45 E-value=0.4 Score=41.95 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..+.|.|++|+|||+++..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 391
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.43 E-value=0.54 Score=47.45 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.8
Q ss_pred CCCCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 79 SSMPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 79 ~~~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
..+..+.|.|++|+||||+++.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344568899999999999999999765
No 392
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=86.42 E-value=0.35 Score=47.74 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=21.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..|.+.|.|.+|+||||++.+++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 3456999999999999999999865
No 393
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=86.35 E-value=0.37 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=17.4
Q ss_pred CCCeEEECCCCCCHHHHHHHHH
Q 009415 81 MPPLFVYGSASTGKTSIIIQVF 102 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl 102 (535)
.++++|.|+||||||+++..-+
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri 43 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRI 43 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHH
Confidence 4579999999999997765533
No 394
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.34 E-value=0.38 Score=42.52 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999975
No 395
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.25 E-value=0.42 Score=42.36 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 396
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.18 E-value=0.18 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..+.|.|++|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3577999999999999999998874
No 397
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.12 E-value=0.39 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..|.|.|++|+||||+++.+.+.|.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999998874
No 398
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.10 E-value=0.43 Score=42.53 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999965
No 399
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.09 E-value=0.4 Score=42.90 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||+++.++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999864
No 400
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.09 E-value=0.42 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 401
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.06 E-value=0.37 Score=42.97 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+|||+++..++..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 402
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.05 E-value=0.41 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.|.||+|+||||+++.++..+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47799999999999999999765
No 403
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.00 E-value=0.58 Score=47.09 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=27.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcC--CCeEEEec
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSC 114 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc 114 (535)
+..+.|.|++|+||||+++.++..+. ...+.++-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 46799999999999999999998875 23555553
No 404
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.00 E-value=0.32 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
+..+.|.||.|+||||+++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999865
No 405
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.98 E-value=0.37 Score=46.87 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=26.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCCC--eEEEec
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSRP--FVYTSC 114 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~~--~~yVnc 114 (535)
.+..+.|.||.|+||||+++.++..+... .++++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 67 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 67 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 44567899999999999999998776532 344443
No 406
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.96 E-value=1.3 Score=53.06 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.2
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
++..+.|.|++|+||||+++.+++.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 4456889999999999999999988763
No 407
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.91 E-value=0.73 Score=47.23 Aligned_cols=33 Identities=6% Similarity=0.048 Sum_probs=26.5
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
.++++|.|++|+|||++++.++..+ +..++.++
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999998654 45555555
No 408
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=85.90 E-value=0.37 Score=43.25 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
+.+.|.|++|+||||++..++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 409
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=85.87 E-value=0.41 Score=45.93 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=22.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
..+.|.||.|+||||+++.++..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677999999999999999997764
No 410
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.81 E-value=0.37 Score=42.03 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.7
Q ss_pred CeEEECCCCCCHHHHHHHHHH
Q 009415 83 PLFVYGSASTGKTSIIIQVFR 103 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~ 103 (535)
.+.|.|++|+|||++++.++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 411
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.78 E-value=0.43 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=22.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
.|.|.|++|+||||+++.+.+.++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4889999999999999999987753
No 412
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.68 E-value=0.41 Score=42.93 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||++++.++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.65 E-value=0.46 Score=42.18 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 414
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.63 E-value=0.45 Score=42.39 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999965
No 415
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.62 E-value=0.46 Score=46.29 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=21.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
++..+.|.||.|+||||+++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456889999999999999999975
No 416
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.62 E-value=0.58 Score=42.00 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHh
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
...+.|.|++|+|||+++..++..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345999999999999999999853
No 417
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.54 E-value=0.47 Score=42.62 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|.+|+||||++..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999965
No 418
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.51 E-value=0.38 Score=46.60 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345678999999999999999987764
No 419
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.50 E-value=0.39 Score=45.64 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345688999999999999999987764
No 420
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.48 E-value=0.45 Score=45.85 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHh
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
++..+.|.||.|+||||+++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456789999999999999999975
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.45 E-value=0.48 Score=41.92 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 422
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.40 E-value=0.73 Score=47.00 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.|.|+.|+||||+++.++..+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhc
Confidence 37799999999999999999776
No 423
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.39 E-value=0.46 Score=43.16 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 424
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=85.38 E-value=0.49 Score=42.74 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|.+|+|||+++..++..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 3899999999999999999865
No 425
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.28 E-value=0.45 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
..+|+|+.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987655
No 426
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.28 E-value=0.47 Score=43.16 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.|.|++|+||||++..++..-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 427
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.26 E-value=0.42 Score=46.56 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+.|.||.|+||||+++.++..+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 445688999999999999999987664
No 428
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.23 E-value=0.5 Score=41.99 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999854
No 429
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=85.20 E-value=0.5 Score=42.66 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEECCCCCCHHHHHHHHHHh
Q 009415 84 LFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~ 104 (535)
+.|.|++|+|||+++..++..
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999988865
No 430
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.20 E-value=1.4 Score=40.66 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=24.2
Q ss_pred eEEECCCCCCHHHHHHHHHHhc---CCCeEEEe
Q 009415 84 LFVYGSASTGKTSIIIQVFRHL---SRPFVYTS 113 (535)
Q Consensus 84 l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVn 113 (535)
|.|-|+.|+||||.++.+.+.| +.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999998776 56666554
No 431
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.20 E-value=0.42 Score=46.42 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 445688999999999999999987654
No 432
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.15 E-value=0.46 Score=41.93 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..+.|.|++|+||||++..++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998753
No 433
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.10 E-value=0.44 Score=48.64 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+.|.||+|+||||+++.++-.+.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 445688999999999999999997654
No 434
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.09 E-value=0.39 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=21.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++.|.||+|+||||+++.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999997763
No 435
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=85.05 E-value=0.65 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+.|.|++|+||||+++.++ .+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 46799999999999999999 553
No 436
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.04 E-value=0.37 Score=46.20 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344688999999999999999987653
No 437
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.04 E-value=0.51 Score=41.80 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 438
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.03 E-value=0.41 Score=45.81 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999987664
No 439
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.02 E-value=0.51 Score=42.45 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999865
No 440
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.99 E-value=0.51 Score=42.52 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+|||+++..++..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 441
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=84.99 E-value=0.42 Score=42.76 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999864
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.98 E-value=0.42 Score=46.06 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345688999999999999999987765
No 443
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.96 E-value=1.3 Score=41.30 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=24.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC--CCeEEE
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS--RPFVYT 112 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yV 112 (535)
.|.|-|+.|+||||.++.+.+.|. .+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 477899999999999999999884 444443
No 444
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=84.96 E-value=0.63 Score=45.02 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHh
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..+.++..-+.........+.|.|.+|+||||++..++..
T Consensus 23 ~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444433332222345899999999999999999954
No 445
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.94 E-value=0.52 Score=42.43 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+|||+++..++..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999965
No 446
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.94 E-value=0.43 Score=46.62 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445688999999999999999987765
No 447
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=84.93 E-value=0.53 Score=42.36 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|.+|+|||+++..++..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 448
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.87 E-value=0.45 Score=46.13 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445688999999999999999987664
No 449
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.80 E-value=0.49 Score=42.69 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.6
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.++|.|++|+|||+++..++..-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 450
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.66 E-value=0.53 Score=48.14 Aligned_cols=27 Identities=11% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+.|.||+|+||||+++.++..+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 345688999999999999999987654
No 451
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=84.63 E-value=0.5 Score=42.99 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 452
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.60 E-value=0.46 Score=46.26 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345688999999999999999987654
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.60 E-value=0.45 Score=45.93 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
++..+.|.||.|+||||+++.++..+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3456889999999999999999876643
No 454
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=84.58 E-value=0.55 Score=42.13 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 455
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=84.54 E-value=0.67 Score=50.06 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhcC---CCeEEEec
Q 009415 60 FPGRRVQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHLS---RPFVYTSC 114 (535)
Q Consensus 60 ~p~Re~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVnc 114 (535)
+.-|.+-...|.....+....+..+++.|++|+||||+++.+.+.++ .++.+++.
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 33444444555554422212233588999999999999999998764 45666663
No 456
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.54 E-value=0.53 Score=48.07 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+.|.||+|+||||+++.++-.+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 345688999999999999999997654
No 457
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.50 E-value=0.56 Score=42.32 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=19.8
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+|||+++..++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3889999999999999999864
No 458
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.45 E-value=0.57 Score=42.48 Aligned_cols=22 Identities=23% Similarity=0.665 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 459
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.43 E-value=0.48 Score=42.27 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||+++.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999865
No 460
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.35 E-value=0.48 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.7
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.+-|.|++|+||||+++.++..+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568899999999999999999744
No 461
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.33 E-value=0.52 Score=48.03 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+.|.||+|+||||+++.++-.+.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345688999999999999999986653
No 462
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=84.29 E-value=0.43 Score=42.28 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|.+|+|||+++..++..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3889999999999999999874
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.28 E-value=0.53 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 464
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.24 E-value=0.46 Score=46.59 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=22.9
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345688999999999999999987765
No 465
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.22 E-value=0.56 Score=48.10 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+.|.||+|+||||+++.++-.+.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 445688999999999999999987654
No 466
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=84.19 E-value=0.58 Score=42.57 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..+.|.|++|+|||+++..++..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 467
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.19 E-value=0.51 Score=41.92 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999953
No 468
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.13 E-value=0.53 Score=42.66 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.5
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..+.|.|++|+|||++++.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 469
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=84.12 E-value=0.59 Score=41.86 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=19.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhc
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.++|.|++|+|||++++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999997666544
No 470
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.08 E-value=0.58 Score=48.17 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+-|.||+|+||||+++.++..+.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 345688999999999999999997654
No 471
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.02 E-value=0.6 Score=42.18 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|.+|+|||+++..++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 472
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=83.98 E-value=0.71 Score=43.41 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=34.3
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhcCCCeEEEecccc----CC-HHHHHHHHHHHHhhc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHLSRPFVYTSCLSC----YS-PRILFESILNQLLLH 134 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l~~~~~yVnc~~~----~s-~r~l~~~Il~~L~~~ 134 (535)
+-.|-|.|..||||||+.+.+.+ +|+++ |+|+.. +. ....+..|...++..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~v--idaD~ia~~l~~~~~~~~~~i~~~fG~~ 64 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASL--VDTDLIAHRITAPAGLAMPAIEQTFGPA 64 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEE--EEHHHHHHHHTSTTCTTHHHHHHHHCGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcE--EECcHHHHHHhcCCcHHHHHHHHHhChh
Confidence 33477999999999999988766 77655 565542 22 224566777776543
No 473
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=83.93 E-value=0.48 Score=42.40 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..+.|.|++|+|||+++..++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999854
No 474
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.90 E-value=0.49 Score=45.72 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344678999999999999999987664
No 475
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.90 E-value=0.5 Score=46.45 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
++..+.|.||.|+||||+++.++..+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345688999999999999999987765
No 476
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=83.85 E-value=0.55 Score=42.87 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+|||+++..++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 477
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.73 E-value=0.57 Score=48.06 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.7
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+.|.||+|+||||+++.++-.+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 345688999999999999999987654
No 478
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.72 E-value=1 Score=47.93 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=24.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC--CCeEEEec
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS--RPFVYTSC 114 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~--~~~~yVnc 114 (535)
.+.|.|++|+||||+++.++..+. -.-+++++
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 477999999999999999987653 23344543
No 479
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.71 E-value=0.62 Score=42.58 Aligned_cols=22 Identities=14% Similarity=0.554 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 480
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=83.70 E-value=0.51 Score=46.00 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=26.0
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcCC--CeEEEec
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLSR--PFVYTSC 114 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~~--~~~yVnc 114 (535)
++..+-|.||.|+||||+++.++..+.. -.++++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 3456889999999999999999876642 2344443
No 481
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=83.62 E-value=0.8 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..+.|.|.+|+||||++.+++..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999964
No 482
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.58 E-value=0.5 Score=50.66 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=32.1
Q ss_pred HHHhccCCCCCCeEEECCCCCCHHHHHHHHHHhc---CCCeEEEeccc
Q 009415 72 RLLGTLNSSMPPLFVYGSASTGKTSIIIQVFRHL---SRPFVYTSCLS 116 (535)
Q Consensus 72 ~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl~~l---~~~~~yVnc~~ 116 (535)
.+|+....++..+.|.|++|+|||++++.++..+ +.+.+|+.-.+
T Consensus 272 ~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 272 EMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp HHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred HHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 3444433345568899999999999999998654 34567776544
No 483
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=83.57 E-value=3 Score=51.20 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCCCCCCeEEECCCCCCHHHHHHHHH-Hhc----CCCeEEEe
Q 009415 65 VQILELLRLLGTLNSSMPPLFVYGSASTGKTSIIIQVF-RHL----SRPFVYTS 113 (535)
Q Consensus 65 ~qi~~L~~ll~~~~~~~~~l~I~G~~GTGKTs~v~~vl-~~l----~~~~~yVn 113 (535)
-|..-+-.++.. ..+++|.+|+|+|||.+....+ +.+ +.+.+||-
T Consensus 930 iQ~q~~~~l~~~----~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~ 979 (1724)
T 4f92_B 930 IQTQVFNTVYNS----DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYIT 979 (1724)
T ss_dssp HHHHHHHHHHSC----CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHHhcC----CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEc
Confidence 344444444443 3589999999999997654333 333 45677775
No 484
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=83.49 E-value=0.64 Score=42.72 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
..++|.|++|+|||+++..++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999653
No 485
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.36 E-value=0.61 Score=42.04 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=20.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||++..++..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999864
No 486
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=83.25 E-value=0.49 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|.+|+|||+++..++..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 487
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=83.14 E-value=0.6 Score=49.29 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=25.1
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC---CCeEEEe
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS---RPFVYTS 113 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~---~~~~yVn 113 (535)
.|++.|.||+||||+.+.+.+.++ ++...+|
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 488999999999999999998875 3444444
No 488
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.09 E-value=0.62 Score=42.46 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|.+|+|||+++..++..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999965
No 489
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=83.06 E-value=0.59 Score=42.66 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+|||++++.++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 490
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=82.99 E-value=0.58 Score=47.59 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.3
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcCC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLSR 107 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~~ 107 (535)
.+.|.|++|+||||+++.++..+..
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4779999999999999999988764
No 491
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.92 E-value=0.63 Score=42.82 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||++++.++..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 492
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.92 E-value=0.6 Score=47.34 Aligned_cols=25 Identities=20% Similarity=0.176 Sum_probs=21.8
Q ss_pred CCCeEEECCCCCCHHHHHHHHHHhc
Q 009415 81 MPPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 81 ~~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
.+.+.|.|+||+||||++..++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4458899999999999999999765
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=82.87 E-value=0.64 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+|||++++.++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999975
No 494
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=82.85 E-value=0.41 Score=42.63 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=9.2
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+|||+++..++..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998753
No 495
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=82.83 E-value=0.68 Score=42.00 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.4
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.++|.|++|+|||+++..++..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999854
No 496
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=82.74 E-value=0.48 Score=48.16 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.8
Q ss_pred CCCCeEEECCCCCCHHHHHHHHHHhcC
Q 009415 80 SMPPLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 80 ~~~~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+..+.|.||+|+||||+++.++-.+.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 345688999999999999999987654
No 497
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=82.73 E-value=0.68 Score=43.74 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=21.0
Q ss_pred CCeEEECCCCCCHHHHHHHHHHhc
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRHL 105 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~l 105 (535)
..|.|.|++|+||||++..++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 358999999999999999999653
No 498
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=82.64 E-value=0.91 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.5
Q ss_pred CeEEECCCCCCHHHHHHHHHHhcC
Q 009415 83 PLFVYGSASTGKTSIIIQVFRHLS 106 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~l~ 106 (535)
.+.|.||+|+||||+++.++..+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 467999999999999999986553
No 499
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=82.62 E-value=0.61 Score=41.86 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.9
Q ss_pred CeEEECCCCCCHHHHHHHHHHh
Q 009415 83 PLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 83 ~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
.+.|.|++|+||||+++.+...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998864
No 500
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.59 E-value=0.69 Score=42.30 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.6
Q ss_pred CCeEEECCCCCCHHHHHHHHHHh
Q 009415 82 PPLFVYGSASTGKTSIIIQVFRH 104 (535)
Q Consensus 82 ~~l~I~G~~GTGKTs~v~~vl~~ 104 (535)
..++|.|++|+|||+++..+++.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35899999999999999999985
Done!