Query 009416
Match_columns 535
No_of_seqs 422 out of 3335
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 12:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 3E-18 6.5E-23 195.3 11.5 279 113-408 92-388 (968)
2 PLN00113 leucine-rich repeat r 99.7 1.1E-17 2.4E-22 190.7 11.1 148 114-265 118-273 (968)
3 KOG2120 SCF ubiquitin ligase, 99.7 3.3E-19 7.1E-24 162.6 -1.4 262 12-310 98-375 (419)
4 KOG4341 F-box protein containi 99.6 5.6E-18 1.2E-22 161.6 -3.2 359 10-450 69-460 (483)
5 PLN03210 Resistant to P. syrin 99.6 4.8E-15 1E-19 169.8 12.2 273 115-411 590-904 (1153)
6 KOG4194 Membrane glycoprotein 99.6 1.9E-16 4E-21 156.8 -0.1 307 113-453 101-427 (873)
7 PLN03210 Resistant to P. syrin 99.6 1.5E-14 3.2E-19 165.9 12.4 258 114-383 611-907 (1153)
8 KOG4194 Membrane glycoprotein 99.4 3.2E-14 7E-19 141.2 0.0 275 114-408 149-447 (873)
9 KOG0444 Cytoskeletal regulator 99.4 3E-15 6.4E-20 149.4 -9.3 227 115-346 33-276 (1255)
10 KOG0444 Cytoskeletal regulator 99.2 7E-14 1.5E-18 139.7 -8.0 274 114-410 78-372 (1255)
11 KOG4341 F-box protein containi 99.0 1.3E-11 2.7E-16 118.6 -3.9 275 137-450 135-434 (483)
12 PRK15387 E3 ubiquitin-protein 99.0 9.6E-10 2.1E-14 118.3 9.8 255 114-411 201-456 (788)
13 cd00116 LRR_RI Leucine-rich re 98.9 7.1E-10 1.5E-14 110.0 2.5 82 115-197 24-119 (319)
14 PF12937 F-box-like: F-box-lik 98.8 4.9E-09 1.1E-13 71.4 3.9 36 12-47 1-36 (47)
15 PRK15387 E3 ubiquitin-protein 98.8 2.4E-08 5.2E-13 107.6 11.2 236 114-383 222-458 (788)
16 KOG2120 SCF ubiquitin ligase, 98.7 1.8E-09 4E-14 99.5 -1.8 174 139-348 185-373 (419)
17 KOG3207 Beta-tubulin folding c 98.7 2.4E-09 5.3E-14 103.7 -1.7 151 137-287 119-281 (505)
18 cd00116 LRR_RI Leucine-rich re 98.6 8.6E-09 1.9E-13 102.3 1.5 105 114-218 51-175 (319)
19 KOG0472 Leucine-rich repeat pr 98.6 1.8E-10 3.8E-15 110.2 -10.1 57 206-264 250-309 (565)
20 KOG0618 Serine/threonine phosp 98.6 5.3E-09 1.1E-13 110.1 -1.4 141 245-408 173-318 (1081)
21 KOG0618 Serine/threonine phosp 98.6 2.9E-09 6.3E-14 112.0 -3.4 234 139-409 219-485 (1081)
22 PRK15370 E3 ubiquitin-protein 98.6 6.4E-08 1.4E-12 104.9 6.0 246 114-383 178-428 (754)
23 PRK15370 E3 ubiquitin-protein 98.5 3E-07 6.5E-12 99.7 9.1 244 139-411 178-426 (754)
24 KOG3207 Beta-tubulin folding c 98.4 3.4E-08 7.4E-13 95.9 -1.1 171 115-288 122-312 (505)
25 KOG1909 Ran GTPase-activating 98.4 5.2E-08 1.1E-12 92.2 -0.8 164 115-287 31-223 (382)
26 PF00646 F-box: F-box domain; 98.4 1.4E-07 3E-12 64.6 1.5 37 12-48 3-39 (48)
27 KOG0617 Ras suppressor protein 98.4 6.5E-09 1.4E-13 88.3 -6.6 148 135-286 29-182 (264)
28 smart00256 FBOX A Receptor for 98.3 9E-07 2E-11 58.2 3.7 34 15-48 1-34 (41)
29 KOG4237 Extracellular matrix p 98.2 4.5E-08 9.7E-13 93.9 -5.2 279 115-411 45-357 (498)
30 KOG0472 Leucine-rich repeat pr 98.2 4.8E-09 1.1E-13 100.5 -12.3 259 115-453 46-308 (565)
31 PF14580 LRR_9: Leucine-rich r 98.2 2.6E-07 5.6E-12 81.7 -0.6 128 137-287 17-150 (175)
32 KOG0617 Ras suppressor protein 98.1 2E-08 4.3E-13 85.4 -8.4 148 115-266 34-187 (264)
33 KOG4658 Apoptotic ATPase [Sign 98.1 1.7E-05 3.7E-10 87.8 11.4 146 139-286 523-677 (889)
34 PF14580 LRR_9: Leucine-rich r 98.1 7.5E-07 1.6E-11 78.8 0.6 100 115-218 20-123 (175)
35 KOG1909 Ran GTPase-activating 98.1 5.8E-07 1.3E-11 85.2 -0.6 114 317-452 155-280 (382)
36 KOG3665 ZYG-1-like serine/thre 97.8 5.8E-06 1.3E-10 89.0 1.1 149 139-287 122-285 (699)
37 KOG1259 Nischarin, modulator o 97.7 8.2E-06 1.8E-10 75.9 0.8 125 160-288 283-410 (490)
38 KOG4658 Apoptotic ATPase [Sign 97.7 1.2E-05 2.5E-10 89.0 0.7 174 115-291 546-731 (889)
39 KOG4237 Extracellular matrix p 97.6 7.3E-06 1.6E-10 79.1 -2.1 250 219-498 56-383 (498)
40 KOG2982 Uncharacterized conser 97.6 2.4E-05 5.3E-10 72.8 0.9 179 113-291 70-263 (418)
41 KOG1259 Nischarin, modulator o 97.4 6.7E-05 1.5E-09 70.0 2.4 44 242-287 274-317 (490)
42 KOG1947 Leucine rich repeat pr 97.4 1.8E-05 3.9E-10 83.2 -1.7 125 113-237 187-329 (482)
43 KOG2982 Uncharacterized conser 97.4 5.1E-05 1.1E-09 70.7 0.8 59 139-197 45-108 (418)
44 PF13855 LRR_8: Leucine rich r 97.3 9.7E-05 2.1E-09 53.3 1.0 58 139-197 1-60 (61)
45 KOG1947 Leucine rich repeat pr 97.2 3.9E-05 8.4E-10 80.7 -2.7 124 137-260 186-329 (482)
46 KOG1859 Leucine-rich repeat pr 97.1 6.5E-05 1.4E-09 78.0 -1.3 203 78-286 50-288 (1096)
47 PRK15386 type III secretion pr 97.1 0.00081 1.8E-08 67.2 6.1 35 278-312 73-108 (426)
48 KOG3665 ZYG-1-like serine/thre 97.1 0.0002 4.4E-09 77.3 1.6 132 106-240 114-261 (699)
49 PF13855 LRR_8: Leucine rich r 96.9 0.0003 6.5E-09 50.7 0.8 58 229-287 1-59 (61)
50 PRK15386 type III secretion pr 96.9 0.0037 7.9E-08 62.6 8.2 134 159-307 50-186 (426)
51 COG4886 Leucine-rich repeat (L 96.9 0.00052 1.1E-08 70.3 2.2 165 137-307 114-286 (394)
52 PLN03150 hypothetical protein; 96.7 0.0019 4.1E-08 69.9 5.0 100 140-240 419-526 (623)
53 COG4886 Leucine-rich repeat (L 96.7 0.00045 9.8E-09 70.7 0.1 169 114-290 116-290 (394)
54 KOG2739 Leucine-rich acidic nu 96.5 0.00059 1.3E-08 62.9 -0.1 104 115-218 19-126 (260)
55 PLN03150 hypothetical protein; 96.4 0.0026 5.7E-08 68.8 4.1 100 210-310 420-527 (623)
56 PF12799 LRR_4: Leucine Rich r 96.4 0.0019 4.1E-08 42.8 1.6 34 140-173 2-36 (44)
57 KOG2123 Uncharacterized conser 96.3 0.00029 6.3E-09 65.2 -3.2 96 115-214 20-123 (388)
58 KOG2739 Leucine-rich acidic nu 96.0 0.0011 2.5E-08 61.0 -1.4 38 250-288 89-127 (260)
59 KOG1644 U2-associated snRNP A' 95.9 0.019 4.1E-07 51.1 5.8 34 140-173 43-76 (233)
60 KOG1644 U2-associated snRNP A' 95.8 0.013 2.9E-07 52.0 4.7 99 115-217 43-149 (233)
61 COG5238 RNA1 Ran GTPase-activa 95.4 0.0053 1.1E-07 56.9 0.7 124 157-287 88-224 (388)
62 KOG0281 Beta-TrCP (transducin 95.3 0.0095 2.1E-07 56.6 1.9 37 9-45 72-112 (499)
63 KOG0532 Leucine-rich repeat (L 94.8 0.0016 3.5E-08 66.2 -4.7 155 130-287 112-270 (722)
64 PF12799 LRR_4: Leucine Rich r 94.7 0.02 4.3E-07 37.9 1.8 33 253-287 2-34 (44)
65 KOG1859 Leucine-rich repeat pr 94.5 0.00077 1.7E-08 70.4 -8.0 119 141-264 166-291 (1096)
66 KOG2997 F-box protein FBX9 [Ge 94.3 0.031 6.7E-07 52.9 2.6 39 7-45 102-145 (366)
67 KOG2123 Uncharacterized conser 94.2 0.0043 9.3E-08 57.7 -3.0 79 208-288 19-99 (388)
68 PLN03215 ascorbic acid mannose 93.9 0.051 1.1E-06 53.9 3.4 38 11-48 3-41 (373)
69 KOG0532 Leucine-rich repeat (L 93.8 0.0014 3E-08 66.7 -7.7 153 129-288 88-245 (722)
70 KOG3864 Uncharacterized conser 93.7 0.015 3.2E-07 51.7 -0.6 88 130-217 92-185 (221)
71 KOG0531 Protein phosphatase 1, 93.5 0.0088 1.9E-07 61.6 -2.8 81 135-218 91-172 (414)
72 PF07723 LRR_2: Leucine Rich R 92.7 0.18 3.9E-06 29.0 3.1 25 162-186 1-26 (26)
73 KOG0531 Protein phosphatase 1, 92.6 0.027 5.9E-07 58.0 -0.8 125 138-265 71-199 (414)
74 COG5238 RNA1 Ran GTPase-activa 92.5 0.14 2.9E-06 47.9 3.7 185 84-288 31-253 (388)
75 KOG3864 Uncharacterized conser 90.8 0.048 1E-06 48.6 -1.0 62 162-224 102-167 (221)
76 KOG4579 Leucine-rich repeat (L 86.1 0.11 2.4E-06 43.4 -1.8 82 116-199 29-113 (177)
77 KOG0274 Cdc4 and related F-box 86.1 0.37 8E-06 50.9 1.6 40 6-45 102-141 (537)
78 PF13013 F-box-like_2: F-box-l 84.1 1 2.2E-05 36.3 2.9 30 11-40 21-50 (109)
79 PF13306 LRR_5: Leucine rich r 82.5 0.79 1.7E-05 38.1 1.8 57 137-195 10-67 (129)
80 smart00367 LRR_CC Leucine-rich 77.3 1.1 2.4E-05 25.5 0.7 17 185-201 1-17 (26)
81 PF13516 LRR_6: Leucine Rich r 77.1 1.3 2.8E-05 24.6 1.0 20 161-180 2-21 (24)
82 PF13504 LRR_7: Leucine rich r 76.9 1.8 3.9E-05 21.9 1.4 10 278-287 2-11 (17)
83 PF00560 LRR_1: Leucine Rich R 76.7 1.3 2.9E-05 24.1 0.9 13 140-152 1-13 (22)
84 PF13306 LRR_5: Leucine rich r 74.4 4.6 9.9E-05 33.4 4.1 13 273-285 54-66 (129)
85 smart00368 LRR_RI Leucine rich 63.0 4.9 0.00011 23.4 1.3 21 161-181 2-22 (28)
86 KOG3763 mRNA export factor TAP 59.2 4.6 0.0001 41.9 1.2 62 138-201 217-285 (585)
87 KOG4579 Leucine-rich repeat (L 55.6 2.1 4.6E-05 36.0 -1.5 78 115-196 54-133 (177)
88 KOG3926 F-box proteins [Amino 52.3 9 0.00019 35.9 1.8 49 7-55 197-252 (332)
89 PF09372 PRANC: PRANC domain; 47.5 15 0.00032 29.0 2.2 25 10-34 70-94 (97)
90 KOG3763 mRNA export factor TAP 46.8 15 0.00032 38.3 2.5 30 254-283 272-307 (585)
91 PF08387 FBD: FBD; InterPro: 39.6 18 0.00038 24.6 1.3 23 480-502 7-29 (51)
92 smart00370 LRR Leucine-rich re 35.2 17 0.00036 20.4 0.5 20 368-390 1-20 (26)
93 smart00369 LRR_TYP Leucine-ric 35.2 17 0.00036 20.4 0.5 20 368-390 1-20 (26)
94 KOG1665 AFH1-interacting prote 32.4 69 0.0015 29.3 4.1 41 159-199 169-209 (302)
95 KOG4408 Putative Mg2+ and Co2+ 21.2 25 0.00053 34.2 -0.7 34 12-45 8-41 (386)
96 smart00365 LRR_SD22 Leucine-ri 20.1 50 0.0011 18.9 0.7 13 161-173 2-14 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=3e-18 Score=195.27 Aligned_cols=279 Identities=15% Similarity=0.128 Sum_probs=196.4
Q ss_pred hcCceEEEEeccCCCCccCCcccc-CCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
.++++.|++..+... ..+|..++ .+++|++|+|++|.+......+.+++|++|+|++|.+... ++..++.+++|++|
T Consensus 92 l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence 478999999876532 36787776 7899999999999885444456789999999999987432 33446789999999
Q ss_pred EEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~ 265 (535)
++++|...+.+ .+.++++|++|++++|.-...++ ..+++|+.|++.++. ....+..++++++|++|++++|.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 99998754433 46678899999999884332222 267889999998887 4455667888999999999988877
Q ss_pred hHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCccccccc---ccCCceeeEEEcCcch-----hhc
Q 009416 266 DEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFS 334 (535)
Q Consensus 266 ~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~-----~~~ 334 (535)
+..+.. +.++++|+.|++.++...+.++. ...+|++|++++|.-...+. ...++|+.|.+.++.. ..+
T Consensus 250 ~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 250 GPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred cccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 654444 67788999999988765444443 34678888888775322222 3456788888877654 346
Q ss_pred ccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416 335 SNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS 408 (535)
Q Consensus 335 ~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~ 408 (535)
.++++|+.|++..+...+ .++..+. .+++|+ .|.++.+.+. +.+|+ .+..+++|+.|++.
T Consensus 329 ~~l~~L~~L~L~~n~l~~----~~p~~l~---~~~~L~-~L~Ls~n~l~-~~~p~-----~~~~~~~L~~L~l~ 388 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSG----EIPKNLG---KHNNLT-VLDLSTNNLT-GEIPE-----GLCSSGNLFKLILF 388 (968)
T ss_pred hcCCCCCEEECcCCCCcC----cCChHHh---CCCCCc-EEECCCCeeE-eeCCh-----hHhCcCCCCEEECc
Confidence 678888888887664443 4455566 677888 7777755555 44554 33344556666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=1.1e-17 Score=190.70 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=62.7
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
.+|++|+++.+...+ .+|. +.+++|++|+|++|.+. .+..++++++|++|++++|.+... ++..+..+++|++|
T Consensus 118 ~~L~~L~Ls~n~l~~-~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFTG-SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCcccc-ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCee
Confidence 456666665543221 2232 23455555555555442 223344555555555555544211 11223445555555
Q ss_pred EEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~ 265 (535)
++++|...+.+ .+..+++|+.|++++|.-...++ ..+++|++|++.++. .+..+..++++++|+.|+++++.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 55555433222 23334445555544442111111 133444444444443 2223333444444444444444433
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-19 Score=162.65 Aligned_cols=262 Identities=21% Similarity=0.282 Sum_probs=163.5
Q ss_pred CCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhccCC---ceeeeccccCccchhHHHHHHHHHHhhcCCCCCceeEE
Q 009416 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP---DVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKF 88 (535)
Q Consensus 12 is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~~~---~l~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~~l 88 (535)
++.|||||+..||+.|+.+|+.+++.|||||+++-+.-. .++..+.-..+ ....+.+ + .+|..|
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p-------~~l~~l~---~---rgV~v~ 164 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP-------DVLGRLL---S---RGVIVF 164 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh-------hHHHHHH---h---CCeEEE
Confidence 678999999999999999999999999999987522211 12222111111 2233333 1 234444
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCccccee
Q 009416 89 SLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKL 166 (535)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L 166 (535)
++- +... ..+..+.. ...+...+++++|+........+...+..|.+|+.|.|.+..+..+ ..++.=.+|+.|
T Consensus 165 Rla--r~~~-~~prlae~--~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 165 RLA--RSFM-DQPRLAEH--FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred Ecc--hhhh-cCchhhhh--hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 432 2111 11111111 1123346888888876555555666677789999999999888665 556677889999
Q ss_pred EeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee---eeCC-CCCccEEEEeec-CCccEEeecCCcccEEEEeeec
Q 009416 167 ALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVN-LSNLKEIILVNT-SDIKRVEIKTSNVNALAIHQTY 240 (535)
Q Consensus 167 ~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~-l~~L~~L~l~~c-~~l~~~~~~~~~L~~L~l~~~~ 240 (535)
+|+.+.. +..++..++++|..|.+|+|++|...... .+.+ .++|+.|++++| .++..-.+
T Consensus 240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-------------- 305 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-------------- 305 (419)
T ss_pred ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH--------------
Confidence 9988765 77778888889999999999999765433 1111 267777777777 22221110
Q ss_pred ccCeEEecCcccccceeEeecc-CCChHHHHHhcCCCCCccEEEeecCCCCccc---cc-CCCCCceEEeccCcc
Q 009416 241 LFPIEVNVSSCGNLKCLKFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RI-SSPCLKTLILECCDK 310 (535)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~~-~~~~L~~L~l~~c~~ 310 (535)
......||+|.+|+|+.+ .+++..... +..++.|++|.++.|..+..- .. ..++|.+|++.+|-.
T Consensus 306 ----~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 306 ----STLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ----HHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 111234556666666533 344444444 567888888888888765321 11 457888888887743
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.65 E-value=5.6e-18 Score=161.60 Aligned_cols=359 Identities=19% Similarity=0.246 Sum_probs=214.6
Q ss_pred CcCC-CCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh------hccCCceeeeccccCccchhHHHHHHHHHHhhcCCCC
Q 009416 10 DGIS-TLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKM 82 (535)
Q Consensus 10 D~is-~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~ 82 (535)
+.++ .||+|++..|||+|+++.+.|++++|+-|... |.......|..+..+ .+|...+ ++.+
T Consensus 69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------~VV~~~~---~Rcg 137 (483)
T KOG4341|consen 69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------GVVENMI---SRCG 137 (483)
T ss_pred ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC--------cceehHh---hhhc
Confidence 3344 69999999999999999999999999999864 333322222221111 1122222 1111
Q ss_pred CceeEEEEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccCCCCc-cCCccccCCCceeEEEEeCccccCC----CCc
Q 009416 83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERR-NLPEIIFYVESLHVLELSYCKLQQP----SEN 157 (535)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~~~~~----~~~ 157 (535)
..+++|++..+...+. .+-....+|+++++|.+.+|..... ...
T Consensus 138 -------------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla 186 (483)
T KOG4341|consen 138 -------------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA 186 (483)
T ss_pred -------------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH
Confidence 2466666666543222 2333345688888888888864222 223
Q ss_pred ccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee----eeCCCCCccEEEEeecCCccE-----Eeec
Q 009416 158 VKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKR-----VEIK 227 (535)
Q Consensus 158 ~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~~l~~-----~~~~ 227 (535)
..++.|+.|++..|.. ++..+..+..+||+|++|++++|+.+..- -..++..++.+...+|..+.. ....
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 5688999999988644 77788888889999999999999877542 233455677776667733321 2224
Q ss_pred CCcccEEEEeeec---ccCeEEecCcccccceeEeecc-CCChHHHHHhcCCCCCccEEEeecCCCCccccc-----CCC
Q 009416 228 TSNVNALAIHQTY---LFPIEVNVSSCGNLKCLKFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-----SSP 298 (535)
Q Consensus 228 ~~~L~~L~l~~~~---~~~~~~~~~~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-----~~~ 298 (535)
++-+..+++..|. +...+..-..+..|+.|..+++ .+++..+..+..++++|+.|.+.+|..++.... .++
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 4555555554554 1112222334677788877744 455566777777888888888888876554433 456
Q ss_pred CCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccc-hhhHhHHHHHhhhhcccccceeEEE
Q 009416 299 CLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLM-VNIEWVVEYFEILAMFQKFSKVLNL 377 (535)
Q Consensus 299 ~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~l~~~~~l~~L~~~L~L 377 (535)
.|+.+++..|.....-.+. ..-.+++.|+++.++-|.... ..+..+...-. .+..++ .+.+
T Consensus 347 ~Le~l~~e~~~~~~d~tL~--------------sls~~C~~lr~lslshce~itD~gi~~l~~~~c---~~~~l~-~lEL 408 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLA--------------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC---SLEGLE-VLEL 408 (483)
T ss_pred hhhhhcccccceehhhhHh--------------hhccCCchhccCChhhhhhhhhhhhhhhhhccc---cccccc-eeee
Confidence 7777777666543221110 122367888888887542111 00122233333 566677 7777
Q ss_pred E-eeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416 378 Q-CREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE 450 (535)
Q Consensus 378 ~-~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~ 450 (535)
+ |+......+. -+...++|+.+++..++ .+.. .....+-..+|+++..-+.
T Consensus 409 ~n~p~i~d~~Le------~l~~c~~Leri~l~~~q-----~vtk-----------~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 409 DNCPLITDATLE------HLSICRNLERIELIDCQ-----DVTK-----------EAISRFATHLPNIKVHAYF 460 (483)
T ss_pred cCCCCchHHHHH------HHhhCcccceeeeechh-----hhhh-----------hhhHHHHhhCccceehhhc
Confidence 7 6555422222 34466799998887655 2221 2223367788888877766
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.59 E-value=4.8e-15 Score=169.85 Aligned_cols=273 Identities=19% Similarity=0.214 Sum_probs=137.3
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
+++.|.+..+. ...+|..+ ...+|++|+++++.+.. +.....+++|+.|+|+++..- ..++. ++.+++|+.|+|
T Consensus 590 ~Lr~L~~~~~~--l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYP--LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCC--CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEe
Confidence 56666665543 23555544 45666667766665532 234455666666666654321 11111 345566666666
Q ss_pred eecCCCcee--eeCCCCCccEEEEeecCCccEEee--cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChH-
Q 009416 194 RSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE- 267 (535)
Q Consensus 194 ~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~- 267 (535)
.+|..+..+ .+..+++|+.|++++|..+..++. .+++|+.|.+++|. ...++. ..++|+.|+++++.+..-
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc
Confidence 666555443 344455666666666544444432 34555555555543 111110 112333333333221110
Q ss_pred ---------------------------HHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCcccccccc-
Q 009416 268 ---------------------------WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEI- 316 (535)
Q Consensus 268 ---------------------------~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~- 316 (535)
.........++|+.|++++|+.+..+|. ..++|+.|++.+|.+++.++.
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 0000011235666777766666655554 345667777777766655542
Q ss_pred -cCCceeeEEEcCcch-hhc-ccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEE-eecccccccccccc
Q 009416 317 -ETPNLSIFKYHGDLI-SFS-SNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ-CREGENVIVPQELR 392 (535)
Q Consensus 317 -~~p~L~~L~~~g~~~-~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~-~~~l~~~~~p~~~~ 392 (535)
..++|+.|.++|+.. ..+ ...++|+.|++..+.. ..++..+. .+++|+ .|.+. |+.++ .+|.
T Consensus 822 ~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i-----~~iP~si~---~l~~L~-~L~L~~C~~L~--~l~~--- 887 (1153)
T PLN03210 822 INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI-----EEVPWWIE---KFSNLS-FLDMNGCNNLQ--RVSL--- 887 (1153)
T ss_pred CCccccCEEECCCCCccccccccccccCEeECCCCCC-----ccChHHHh---cCCCCC-EEECCCCCCcC--ccCc---
Confidence 345666677666543 111 1234566666643311 13455555 677777 66666 66665 3554
Q ss_pred ccCCCCcccceeeEEEEee
Q 009416 393 QIQSPPLTSVKKLNYSVRT 411 (535)
Q Consensus 393 ~~~~~~l~~L~~L~l~~~~ 411 (535)
.+..+++|+.|+++.|+
T Consensus 888 --~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 888 --NISKLKHLETVDFSDCG 904 (1153)
T ss_pred --ccccccCCCeeecCCCc
Confidence 44455666666666554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=1.9e-16 Score=156.82 Aligned_cols=307 Identities=16% Similarity=0.123 Sum_probs=200.2
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
.++++++.+..+. ...+|.......+|+.|+|.+|.+... .....+|.|++|||+.|.++.-... -+..-+++++
T Consensus 101 l~nLq~v~l~~N~--Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~ 177 (873)
T KOG4194|consen 101 LPNLQEVNLNKNE--LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKK 177 (873)
T ss_pred CCcceeeeeccch--hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceE
Confidence 3688888877653 446777665667789999988877543 5567788899999988876321111 1334467999
Q ss_pred EEEeecCC--CceeeeCCCCCccEEEEeec--CCccEEee-cCCcccEEEEeeecccCe-EEecCcccccceeEeeccCC
Q 009416 191 LEIRSCEG--LESLDLVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 191 L~L~~c~~--l~~~~~~~l~~L~~L~l~~c--~~l~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~ 264 (535)
|+|++|.. ++.-.+.++.+|..|.++.+ ..+....+ ++|.|+.|++..+..... ...|.++++|+.|.|..|++
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 99988864 23336667778888888887 34444444 588999999988873222 45688888888888887776
Q ss_pred ChHHHHHhcCCCCCccEEEeecCC--CCcccc-cCCCCCceEEeccCcccccccc----cCCceeeEEEcCcch-----h
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCH--KLTSVR-ISSPCLKTLILECCDKLIQVEI----ETPNLSIFKYHGDLI-----S 332 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~--~l~~l~-~~~~~L~~L~l~~c~~L~~l~~----~~p~L~~L~~~g~~~-----~ 332 (535)
+.-.- ..+-.+.++++|+|.... .+..-+ .....|+.|+++.-. +..+.+ .+++|+.|.++.+.. .
T Consensus 258 ~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 258 SKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChh
Confidence 54211 124567788888887632 111111 134566777765421 233332 347788888777665 4
Q ss_pred hcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeec
Q 009416 333 FSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTD 412 (535)
Q Consensus 333 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~ 412 (535)
.+..+..|++|.++.+.... .-...+. .+++|+ +|+|..|.+. +.+.+. ...+..+++|++|.+..
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~----l~e~af~---~lssL~-~LdLr~N~ls-~~IEDa--a~~f~gl~~LrkL~l~g--- 401 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDH----LAEGAFV---GLSSLH-KLDLRSNELS-WCIEDA--AVAFNGLPSLRKLRLTG--- 401 (873)
T ss_pred HHHHHHHhhhhcccccchHH----HHhhHHH---Hhhhhh-hhcCcCCeEE-EEEecc--hhhhccchhhhheeecC---
Confidence 55667778888886553222 1233345 678888 8888877776 555431 11344578888888862
Q ss_pred CCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416 413 SWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
.+++++....|.-.++||.|.+..++
T Consensus 402 ---------------Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 402 ---------------NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ---------------ceeeecchhhhccCcccceecCCCCc
Confidence 45677777777777899999888665
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=1.5e-14 Score=165.85 Aligned_cols=258 Identities=20% Similarity=0.223 Sum_probs=189.4
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCcc-ccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.++++|++..+. ...+|..+..+++|+.|+|+++. +...+.+..+++|++|+|++|... ..++..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~--l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSK--LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcc--ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEe
Confidence 578888887654 34677777788999999999875 333366778899999999887542 22344467889999999
Q ss_pred EeecCCCceeee-CCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEec-----------------------
Q 009416 193 IRSCEGLESLDL-VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNV----------------------- 248 (535)
Q Consensus 193 L~~c~~l~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------- 248 (535)
+++|..++.+.. .++++|+.|++++|..+..++...++|+.|++.++....++..+
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 999988877632 25789999999999777766655678899988877622222111
Q ss_pred -------CcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc--CCCCCceEEeccCcccccccccCC
Q 009416 249 -------SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVEIETP 319 (535)
Q Consensus 249 -------~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~l~~~~p 319 (535)
...++|+.|+++++......+.. +.++++|+.|+|.+|..++.+|. ..++|+.|++++|.++..+....+
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence 11346777778777655444444 67889999999999998888876 357899999999998877765567
Q ss_pred ceeeEEEcCcch----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEE-eeccc
Q 009416 320 NLSIFKYHGDLI----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ-CREGE 383 (535)
Q Consensus 320 ~L~~L~~~g~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~-~~~l~ 383 (535)
+|+.|.+.++.. ..+.++++|+.|++..|.... .++..+. .+++|+ .|.++ |..+.
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~----~l~~~~~---~L~~L~-~L~l~~C~~L~ 907 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ----RVSLNIS---KLKHLE-TVDFSDCGALT 907 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC----ccCcccc---cccCCC-eeecCCCcccc
Confidence 899999888765 567788999999998775544 3444445 688888 88887 76665
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.40 E-value=3.2e-14 Score=141.17 Aligned_cols=275 Identities=15% Similarity=0.117 Sum_probs=173.2
Q ss_pred cCceEEEEeccCCCCccCCcc-ccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
+-++.|+|+.+... .+|.. +..-.++++|+|++|.+... ..+..+.+|.+|.|+.|+++.-.. ..++.+|+|+.
T Consensus 149 ~alrslDLSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH-HHhhhcchhhh
Confidence 46777777765433 33332 22347899999999988544 567788899999999998854332 34778899999
Q ss_pred EEEeecCC--CceeeeCCCCCccEEEEeec--CCccEEe-ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCC
Q 009416 191 LEIRSCEG--LESLDLVNLSNLKEIILVNT--SDIKRVE-IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 191 L~L~~c~~--l~~~~~~~l~~L~~L~l~~c--~~l~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
|+|..|.. .+.+.+.++++|+.|.+..+ ..+..=. ..+.+++.|++..+. .......+-++..|+.|+++.|.+
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 99988864 34567788899999988777 3443322 367888888888776 322334566788888888888776
Q ss_pred ChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCc--cccc-ccccCCceeeEEEcCcch------
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD--KLIQ-VEIETPNLSIFKYHGDLI------ 331 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~--~L~~-l~~~~p~L~~L~~~g~~~------ 331 (535)
....... -.-+++|+.|+|+.. .++.++. ....|+.|.++.-. .+.+ ......+|+.|+++.+..
T Consensus 306 ~rih~d~-WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 306 QRIHIDS-WSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred heeecch-hhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 5433333 345788888888873 2333333 12456666665322 1211 112334566665554433
Q ss_pred --hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416 332 --SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS 408 (535)
Q Consensus 332 --~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~ 408 (535)
..+.++++|++|++.++.... .....+. ++.+|+ .|.|..|.+. ++.++ .+.++ +|++|.+.
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~----I~krAfs---gl~~LE-~LdL~~Naia--SIq~n----AFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKS----IPKRAFS---GLEALE-HLDLGDNAIA--SIQPN----AFEPM-ELKELVMN 447 (873)
T ss_pred chhhhccchhhhheeecCceeee----cchhhhc---cCcccc-eecCCCCcce--eeccc----ccccc-hhhhhhhc
Confidence 355668888888887663333 2244455 688888 7777755544 33332 33344 77777765
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.38 E-value=3e-15 Score=149.37 Aligned_cols=227 Identities=18% Similarity=0.165 Sum_probs=137.2
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.++.|.|+.. ....+|..++.+.+|++|++++|++... .....+|+|+.+.+..|.+....++.-+-.+..|..|+|
T Consensus 33 ~~~WLkLnrt--~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNRT--KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEechh--hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 4555555543 3446788888888888888888877433 556678888888888877744444444556677777777
Q ss_pred eecCCCcee--eeCCCCCccEEEEeec---CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHH
Q 009416 194 RSCEGLESL--DLVNLSNLKEIILVNT---SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW 268 (535)
Q Consensus 194 ~~c~~l~~~--~~~~l~~L~~L~l~~c---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 268 (535)
+.|.. +.. .+....++-.|+++++ .....+.+++..|-.|+++.+.....+..+..+.+|++|.|++|.+....
T Consensus 111 ShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 111 SHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred chhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 77753 222 2333467777777776 11223334667777778888775556677778888888888888777666
Q ss_pred HHHhcCCCCCccEEEeecCC-CCcccccCC---CCCceEEeccCcccc---cccccCCceeeEEEcCcch----hhcccC
Q 009416 269 LCNGISKLPLLEYLSMTKCH-KLTSVRISS---PCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI----SFSSNA 337 (535)
Q Consensus 269 l~~l~~~~~~L~~L~L~~c~-~l~~l~~~~---~~L~~L~l~~c~~L~---~l~~~~p~L~~L~~~g~~~----~~~~~l 337 (535)
+.. +..+++|+.|.+++.. .+..+|.+. .+|..++++ |.+|. +-....++|+.|+++|+.. ...+..
T Consensus 190 LrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W 267 (1255)
T KOG0444|consen 190 LRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEW 267 (1255)
T ss_pred Hhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHH
Confidence 655 4556667777777632 233444432 244444443 22222 2223445666667766654 233334
Q ss_pred cccceeEEE
Q 009416 338 LSLSETSLC 346 (535)
Q Consensus 338 ~~L~~L~l~ 346 (535)
.+|+.|+++
T Consensus 268 ~~lEtLNlS 276 (1255)
T KOG0444|consen 268 ENLETLNLS 276 (1255)
T ss_pred hhhhhhccc
Confidence 445555554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.25 E-value=7e-14 Score=139.73 Aligned_cols=274 Identities=18% Similarity=0.184 Sum_probs=167.8
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
+.++.+.+..+......+|..++++..|+.|+|++|.+ ..|.....-.++-.|+|++|.+.. ....++.++..|-.|+
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhc
Confidence 45555555555556778999999999999999999988 444556677888999999998721 2234456677888888
Q ss_pred EeecCCCcee--eeCCCCCccEEEEeecCC----ccEEeecCCcccEEEEeeec--ccCeEEecCcccccceeEeeccCC
Q 009416 193 IRSCEGLESL--DLVNLSNLKEIILVNTSD----IKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 193 L~~c~~l~~~--~~~~l~~L~~L~l~~c~~----l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
|+.|. ++.+ .+..+..|++|.+++++- +..++ .+.+|+.|.+++.. ...++.++.++.+|..++++.|.+
T Consensus 157 LS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 157 LSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred cccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 88875 3333 445577889999988721 22221 34567777787776 345677889999999999998876
Q ss_pred ChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCccccccc---ccCCceeeEEEcCcch------h
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI------S 332 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~------~ 332 (535)
.. ++.-+-++++|+.|+|++.. ++.+.. .-.+|++|+++... |..++ ...++|+.|-...+.. .
T Consensus 235 p~--vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 235 PI--VPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred Cc--chHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 43 22224567899999999843 222221 12355555554321 11111 1122232222211111 3
Q ss_pred hcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEe
Q 009416 333 FSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR 410 (535)
Q Consensus 333 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~ 410 (535)
.++.+..|+.+....+... .+|+.+- .+..|+ .|.+.+|.+- .+|+ .+.-++.|+.|++...
T Consensus 311 GIGKL~~Levf~aanN~LE-----lVPEglc---RC~kL~-kL~L~~NrLi--TLPe-----aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-----LVPEGLC---RCVKLQ-KLKLDHNRLI--TLPE-----AIHLLPDLKVLDLREN 372 (1255)
T ss_pred chhhhhhhHHHHhhccccc-----cCchhhh---hhHHHH-Hhccccccee--echh-----hhhhcCCcceeeccCC
Confidence 4455555555544332111 2344444 566677 7777776665 6676 6666777777777643
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=1.3e-11 Score=118.60 Aligned_cols=275 Identities=17% Similarity=0.174 Sum_probs=169.5
Q ss_pred CC-CceeEEEEeCccccCC----CCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCceeee----CC
Q 009416 137 YV-ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDL----VN 206 (535)
Q Consensus 137 ~~-~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~----~~ 206 (535)
+| ..|+.|.+++|.-... ....++|+++.|.+.++.. ++..+..+...|++|++|++..|..+....+ .+
T Consensus 135 Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 135 RCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred hhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 44 6789999999864222 3346799999999999866 8888888888999999999999998866533 35
Q ss_pred CCCccEEEEeecCCccE-----EeecCCcccEEEEeeecccCe---EEecCcccccceeEee-ccCCChHHHHHhcCCCC
Q 009416 207 LSNLKEIILVNTSDIKR-----VEIKTSNVNALAIHQTYLFPI---EVNVSSCGNLKCLKFD-FLPIEDEWLCNGISKLP 277 (535)
Q Consensus 207 l~~L~~L~l~~c~~l~~-----~~~~~~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~L~-~~~~~~~~l~~l~~~~~ 277 (535)
+++|+++++++|+.+.. +..++..++.+...||..... ...-..++.+..+++. .+.+++..+..+...+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 79999999999955443 333566666666666541110 0011223334444433 33455555555555666
Q ss_pred CccEEEeecCCCCccccc-----CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccc
Q 009416 278 LLEYLSMTKCHKLTSVRI-----SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLM 352 (535)
Q Consensus 278 ~L~~L~L~~c~~l~~l~~-----~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~ 352 (535)
.|+.|..++|..++.... .+.+|+.|.+..|.++...-.. ..-.+.+.|+.+++..+....
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--------------~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--------------MLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--------------hhhcCChhhhhhcccccceeh
Confidence 677777777666544322 3455666666665544222111 122468889999886653322
Q ss_pred hhhHhHHHHHhhhhcccccceeEEEE-eeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchh
Q 009416 353 VNIEWVVEYFEILAMFQKFSKVLNLQ-CREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIA 431 (535)
Q Consensus 353 ~~~~~l~~~l~~~~~l~~L~~~L~L~-~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 431 (535)
-..+.+.-. +.+.|+ +|.++ |...++..+-. +....-....|..|.+..+| .+.
T Consensus 361 --d~tL~sls~---~C~~lr-~lslshce~itD~gi~~--l~~~~c~~~~l~~lEL~n~p-----------------~i~ 415 (483)
T KOG4341|consen 361 --DGTLASLSR---NCPRLR-VLSLSHCELITDEGIRH--LSSSSCSLEGLEVLELDNCP-----------------LIT 415 (483)
T ss_pred --hhhHhhhcc---CCchhc-cCChhhhhhhhhhhhhh--hhhccccccccceeeecCCC-----------------Cch
Confidence 113555555 889999 88888 65444321110 01022345678888888666 233
Q ss_pred HHhhhhhccCcccceEEEe
Q 009416 432 NVLDGLLWTSPHAEMVSIE 450 (535)
Q Consensus 432 ~l~~~ll~~~p~Le~L~l~ 450 (535)
...-..+..|++||.+.+.
T Consensus 416 d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 416 DATLEHLSICRNLERIELI 434 (483)
T ss_pred HHHHHHHhhCcccceeeee
Confidence 3344477889999997765
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.01 E-value=9.6e-10 Score=118.26 Aligned_cols=255 Identities=15% Similarity=0.045 Sum_probs=160.1
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.+-..|+++.+.. ..+|..+. ++|+.|.+++|.+...+. ..++|++|++++|.++. ++. ..++|++|++
T Consensus 201 ~~~~~LdLs~~~L--tsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCC--CcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeec
Confidence 4556676666543 36887665 589999999998854332 36899999999998742 222 2478999999
Q ss_pred eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI 273 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~ 273 (535)
.+|.. ..+.- ..++|+.|++.+| .+..++...++|+.|++++|....++. ...+|+.|.+++|.++. ++.
T Consensus 270 s~N~L-~~Lp~-lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~--LP~-- 339 (788)
T PRK15387 270 FSNPL-THLPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS--LPT-- 339 (788)
T ss_pred cCCch-hhhhh-chhhcCEEECcCC-ccccccccccccceeECCCCccccCCC---CcccccccccccCcccc--ccc--
Confidence 88853 32211 1257888888887 344444456789999998887222222 12357778888777653 111
Q ss_pred CCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcc-cCcccceeEEEEecccc
Q 009416 274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSS-NALSLSETSLCFSSHLM 352 (535)
Q Consensus 274 ~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~-~l~~L~~L~l~~~~~~~ 352 (535)
..++|+.|+++++ .+..+|....+|+.|.+.+. .+..+.....+|+.|.++++....+. ..++|+.|+++.+....
T Consensus 340 -lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 340 -LPSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 416 (788)
T ss_pred -cccccceEecCCC-ccCCCCCCCcccceehhhcc-ccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCC
Confidence 1247888888874 45556655567777776653 24444434457888888877652221 23468888886553222
Q ss_pred hhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416 353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT 411 (535)
Q Consensus 353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~ 411 (535)
++.. ..+|+ .|.++.|.++ .+|+ .+..+++|+.|+|+..+
T Consensus 417 -----IP~l------~~~L~-~L~Ls~NqLt--~LP~-----sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 417 -----LPML------PSGLL-SLSVYRNQLT--RLPE-----SLIHLSSETTVNLEGNP 456 (788)
T ss_pred -----CCcc------hhhhh-hhhhccCccc--ccCh-----HHhhccCCCeEECCCCC
Confidence 2222 23456 6677766666 6776 56677888888887433
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=7.1e-10 Score=110.05 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=41.1
Q ss_pred CceEEEEeccCCCC---ccCCccccCCCceeEEEEeCccccC-C-------CCcccCcccceeEeeeEeeCh---hHHHH
Q 009416 115 EVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQ-P-------SENVKLFSLRKLALREVCADD---QAIAS 180 (535)
Q Consensus 115 ~l~~L~L~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~~~~-~-------~~~~~l~~L~~L~L~~~~~~~---~~l~~ 180 (535)
+++.+.+..+.... ..++..+...++|++|+++++.+.. + ..+..+++|++|+++++.+.. ..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 47777776654321 2344444455666777766655431 1 122345566666666665532 11222
Q ss_pred HHhCCCcccEEEEeecC
Q 009416 181 LISGCPLIEYLEIRSCE 197 (535)
Q Consensus 181 ~~~~~p~Le~L~L~~c~ 197 (535)
+... ++|++|++++|.
T Consensus 104 l~~~-~~L~~L~ls~~~ 119 (319)
T cd00116 104 LLRS-SSLQELKLNNNG 119 (319)
T ss_pred Hhcc-CcccEEEeeCCc
Confidence 2222 446666666654
No 14
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.80 E-value=4.9e-09 Score=71.37 Aligned_cols=36 Identities=33% Similarity=0.731 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhc
Q 009416 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ 47 (535)
Q Consensus 12 is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~ 47 (535)
|+.||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998753
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.80 E-value=2.4e-08 Score=107.62 Aligned_cols=236 Identities=17% Similarity=0.077 Sum_probs=147.3
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.+++.|.+..+.. ..+|.. .++|++|+|++|.+...+. ..++|+.|++++|.+. .++. ..+.|+.|++
T Consensus 222 ~~L~~L~L~~N~L--t~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~--~Lp~---lp~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNL--TSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT--HLPA---LPSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcC--CCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccCCchh--hhhh---chhhcCEEEC
Confidence 4788888887543 356642 4899999999998854332 3578999999988763 2332 2357888888
Q ss_pred eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI 273 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~ 273 (535)
.+|.. ..+.. ..++|+.|++++| .+..++...++|+.|.+.+|....++. -..+|+.|+|++|.++.- +
T Consensus 290 s~N~L-t~LP~-~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~Ls~L--P--- 358 (788)
T PRK15387 290 FGNQL-TSLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLASL--P--- 358 (788)
T ss_pred cCCcc-ccccc-cccccceeECCCC-ccccCCCCcccccccccccCccccccc---cccccceEecCCCccCCC--C---
Confidence 88853 33321 2368999999887 333333233567788887776222221 113788888888877641 1
Q ss_pred CCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccC-cccceeEEEEecccc
Q 009416 274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNA-LSLSETSLCFSSHLM 352 (535)
Q Consensus 274 ~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l-~~L~~L~l~~~~~~~ 352 (535)
...++|+.|++.++ .+..++....+|+.|+++++ .+..+....++|+.|.++++....+... .+|+.|++..+...
T Consensus 359 ~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt- 435 (788)
T PRK15387 359 TLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT- 435 (788)
T ss_pred CCCcccceehhhcc-ccccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-
Confidence 12346777777763 34455555567888888665 3444544446778888877765222222 34677666544222
Q ss_pred hhhHhHHHHHhhhhcccccceeEEEEeeccc
Q 009416 353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGE 383 (535)
Q Consensus 353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~ 383 (535)
.+++.+. .+++++ .|.++.|.+.
T Consensus 436 ----~LP~sl~---~L~~L~-~LdLs~N~Ls 458 (788)
T PRK15387 436 ----RLPESLI---HLSSET-TVNLEGNPLS 458 (788)
T ss_pred ----ccChHHh---hccCCC-eEECCCCCCC
Confidence 3455555 688888 7777776666
No 16
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.8e-09 Score=99.52 Aligned_cols=174 Identities=20% Similarity=0.177 Sum_probs=100.1
Q ss_pred CceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee----eeCCCCCcc
Q 009416 139 ESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL----DLVNLSNLK 211 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~----~~~~l~~L~ 211 (535)
+.|++|||++..++.. .....|..|+.|.|.++.+++..... ++.-.+|+.|+|+.|.++... -+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 4577777776554321 23345677777777777665443333 455567777777777766443 344566677
Q ss_pred EEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCc-ccccceeEeeccC--CChHHHHHhcCCCCCccEEEeecCC
Q 009416 212 EIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSS-CGNLKCLKFDFLP--IEDEWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 212 ~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~L~~~~--~~~~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
.|++++|....+.. .+.+.. -++|+.|+|+++. +....+..+...||+|.+|++++|.
T Consensus 264 ~LNlsWc~l~~~~V-------------------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKV-------------------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hcCchHhhccchhh-------------------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 77777662221110 111111 1244444444332 2223455556789999999999987
Q ss_pred CCcccc----cCCCCCceEEeccCccccc-ccccCCceeeEEEcCcchhhcccCcccceeEEEEe
Q 009416 289 KLTSVR----ISSPCLKTLILECCDKLIQ-VEIETPNLSIFKYHGDLISFSSNALSLSETSLCFS 348 (535)
Q Consensus 289 ~l~~l~----~~~~~L~~L~l~~c~~L~~-l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~ 348 (535)
.++.-- ..++.|++|.++.|..+.. .. ..+...|+|..|++.++
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~----------------~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL----------------LELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCCChHHe----------------eeeccCcceEEEEeccc
Confidence 766421 1567888999988876511 11 12345677888887766
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.4e-09 Score=103.69 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=108.1
Q ss_pred CCCceeEEEEeCccccCCC---CcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCC
Q 009416 137 YVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSN 209 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~ 209 (535)
+..+|+...|.++.+..+. ....|++++.|+|++|-+ .-..+..++.-+|+||.|+|+.|...-.+ ....+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567777788887765442 456788899999988877 44566777888899999999888654221 2224688
Q ss_pred ccEEEEeec----CCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEe
Q 009416 210 LKEIILVNT----SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (535)
Q Consensus 210 L~~L~l~~c----~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 284 (535)
|+.|.++.| ..+..+...+|+|+.|.+.++. ..........+..|+.|+|++|.+.+.........+|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 999999999 2344444588999999998885 22222334457789999999888776554444778899999988
Q ss_pred ecC
Q 009416 285 TKC 287 (535)
Q Consensus 285 ~~c 287 (535)
+.|
T Consensus 279 s~t 281 (505)
T KOG3207|consen 279 SST 281 (505)
T ss_pred ccc
Confidence 875
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=8.6e-09 Score=102.27 Aligned_cols=105 Identities=26% Similarity=0.206 Sum_probs=62.5
Q ss_pred cCceEEEEeccCCCC-----ccCCccccCCCceeEEEEeCccccC--CCCcccC---cccceeEeeeEeeChhHHH---H
Q 009416 114 SEVKELVLVHWRSER-----RNLPEIIFYVESLHVLELSYCKLQQ--PSENVKL---FSLRKLALREVCADDQAIA---S 180 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~-----~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~l---~~L~~L~L~~~~~~~~~l~---~ 180 (535)
++++++.+....... ..++..+..+++|++|++++|.+.. +..+..+ ++|++|++++|.+++.... .
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 357777776543221 1233445567888888888887742 1223333 4488888888887543333 2
Q ss_pred HHhCC-CcccEEEEeecCCCce----e--eeCCCCCccEEEEeec
Q 009416 181 LISGC-PLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNT 218 (535)
Q Consensus 181 ~~~~~-p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c 218 (535)
.+..+ ++|++|++++|..... + .+..+++|++|++++|
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 34455 7888888888864421 1 2333456777776665
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.63 E-value=1.8e-10 Score=110.20 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=40.2
Q ss_pred CCCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416 206 NLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 206 ~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
.+++|..|++..+ ++++++ .-+.+|++|+++++.....+.+++++ +|+.|.+.+|.+
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 4677777777776 444443 24567888888888755667788888 888888877765
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.60 E-value=5.3e-09 Score=110.11 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=83.0
Q ss_pred EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCccccccc-ccCCceee
Q 009416 245 EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVE-IETPNLSI 323 (535)
Q Consensus 245 ~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~-~~~p~L~~ 323 (535)
...+..+.+ .|+|..|.+.... +.++++|+.|.... ..+..+....++|+.|....|+-..... ....+|++
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~~~d----ls~~~~l~~l~c~r-n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~ 245 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEMEVLD----LSNLANLEVLHCER-NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQY 245 (1081)
T ss_pred hcchhhhhe--eeecccchhhhhh----hhhccchhhhhhhh-cccceEEecCcchheeeeccCcceeecccccccccee
Confidence 334444444 4777777665211 34566666665543 3455555666778888877776542222 12236677
Q ss_pred EEEcCcch----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCc
Q 009416 324 FKYHGDLI----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPL 399 (535)
Q Consensus 324 L~~~g~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l 399 (535)
+.++-... .++..+++|+.+.+..+.. . .++.-+. .+++|+ .|.+.-+.++ .+|+ ...++
T Consensus 246 ~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~----~lp~ri~---~~~~L~-~l~~~~nel~--yip~-----~le~~ 309 (1081)
T KOG0618|consen 246 LDISHNNLSNLPEWIGACANLEALNANHNRL-V----ALPLRIS---RITSLV-SLSAAYNELE--YIPP-----FLEGL 309 (1081)
T ss_pred eecchhhhhcchHHHHhcccceEecccchhH-H----hhHHHHh---hhhhHH-HHHhhhhhhh--hCCC-----ccccc
Confidence 76665443 5667788888887754322 2 3333334 577788 5555445554 6776 55678
Q ss_pred ccceeeEEE
Q 009416 400 TSVKKLNYS 408 (535)
Q Consensus 400 ~~L~~L~l~ 408 (535)
.+|++|+|.
T Consensus 310 ~sL~tLdL~ 318 (1081)
T KOG0618|consen 310 KSLRTLDLQ 318 (1081)
T ss_pred ceeeeeeeh
Confidence 899999986
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.59 E-value=2.9e-09 Score=112.01 Aligned_cols=234 Identities=17% Similarity=0.174 Sum_probs=133.6
Q ss_pred CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-eeCCCCCccEEEEee
Q 009416 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEIILVN 217 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~~~l~~L~~L~l~~ 217 (535)
++|+.|...+|.+........-.+|++++++.+.+. .++.++..|++|+.+.+..|....-. .+....+|+.|.+..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 555555555555532222223356788888877763 34467788888888888777652111 233334555555555
Q ss_pred c--CCccEEeecCCcccEEEEeeecccCeEE------------------------ec--CcccccceeEeeccCCChHHH
Q 009416 218 T--SDIKRVEIKTSNVNALAIHQTYLFPIEV------------------------NV--SSCGNLKCLKFDFLPIEDEWL 269 (535)
Q Consensus 218 c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~------------------------~~--~~l~~L~~L~L~~~~~~~~~l 269 (535)
| ..+........+|++|++..+.....+. .. ...+.|+.|++.+|.+++..+
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 5 2222222234455555555443111111 11 124456666667777776666
Q ss_pred HHhcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch----hhcccCcccceeEE
Q 009416 270 CNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSNALSLSETSL 345 (535)
Q Consensus 270 ~~l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~----~~~~~l~~L~~L~l 345 (535)
+- +.++++|+.|+|+... ++.+|..+ + ...+.|+.|.++|+.. ..+.+++.|+.|..
T Consensus 377 p~-l~~~~hLKVLhLsyNr-L~~fpas~-------~----------~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 377 PV-LVNFKHLKVLHLSYNR-LNSFPASK-------L----------RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hh-hccccceeeeeecccc-cccCCHHH-------H----------hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 55 5667777777777632 33333211 0 0112233444455443 35567777888766
Q ss_pred EEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416 346 CFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV 409 (535)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~ 409 (535)
..+... .+|++.+ +++|+ .++++||+++...+|+ ..|. ++|++|+++.
T Consensus 438 hsN~l~-----~fPe~~~----l~qL~-~lDlS~N~L~~~~l~~-----~~p~-p~LkyLdlSG 485 (1081)
T KOG0618|consen 438 HSNQLL-----SFPELAQ----LPQLK-VLDLSCNNLSEVTLPE-----ALPS-PNLKYLDLSG 485 (1081)
T ss_pred cCCcee-----echhhhh----cCcce-EEecccchhhhhhhhh-----hCCC-cccceeeccC
Confidence 443222 3466665 99999 9999999999778887 6664 6999999984
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.57 E-value=6.4e-08 Score=104.86 Aligned_cols=246 Identities=14% Similarity=0.074 Sum_probs=144.4
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.+...|.+.... ...+|..+. ++|+.|+|++|.+...+. ..+++|++|++++|.++. ++..+ .++|+.|+|
T Consensus 178 ~~~~~L~L~~~~--LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILG--LTTIPACIP--EQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCC--cCcCCcccc--cCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChhh--hccccEEEC
Confidence 456777776543 346776553 679999999998853322 224689999999987742 22212 357899999
Q ss_pred eecCCCceeeeCCCCCccEEEEeecCCccEEee-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHh
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l 272 (535)
++|... .+...-.++|+.|++++| .+..++. -.++|+.|++++|.-..++..+ .++|+.|++++|.++.- +..
T Consensus 249 s~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~L-P~~- 322 (754)
T PRK15370 249 SINRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTAL-PET- 322 (754)
T ss_pred cCCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccC-Ccc-
Confidence 888643 332111257888988865 3443432 2357889988887622222222 24678888887776531 111
Q ss_pred cCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccccc-cCCceeeEEEcCcchhhc-cc-CcccceeEEEEe
Q 009416 273 ISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLISFS-SN-ALSLSETSLCFS 348 (535)
Q Consensus 273 ~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~~-~~p~L~~L~~~g~~~~~~-~~-l~~L~~L~l~~~ 348 (535)
..++|+.|.+.+|. ++.++. .+++|+.|+++++. +..+.. -.++|+.|.++++....+ .+ .++|+.|+++.+
T Consensus 323 --l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N 398 (754)
T PRK15370 323 --LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRN 398 (754)
T ss_pred --ccccceeccccCCc-cccCChhhcCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcCCCCCHhHHHHHHHHhhccC
Confidence 13578888887764 344443 23578888887763 333332 125778888877654111 11 135777777665
Q ss_pred cccchhhHhHHHHHhhhhcccccceeEEEEeeccc
Q 009416 349 SHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGE 383 (535)
Q Consensus 349 ~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~ 383 (535)
..... ...++.+.. .++++. .|.+..|.+.
T Consensus 399 ~L~~L-P~sl~~~~~---~~~~l~-~L~L~~Npls 428 (754)
T PRK15370 399 NLVRL-PESLPHFRG---EGPQPT-RIIVEYNPFS 428 (754)
T ss_pred CcccC-chhHHHHhh---cCCCcc-EEEeeCCCcc
Confidence 32220 113455555 567777 6766655544
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.51 E-value=3e-07 Score=99.72 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=119.5
Q ss_pred CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec
Q 009416 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c 218 (535)
.+.+.|+++++.+...|.. -.++|+.|+|++|.++. ++..+ +++|+.|++++|. +..+...-.++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCc-cccCChhhhccccEEECcCC
Confidence 4456677777665322211 12467777777776632 22111 2467777777664 33332111246777777776
Q ss_pred CCccEEee-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc-C
Q 009416 219 SDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-S 296 (535)
Q Consensus 219 ~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~ 296 (535)
. +..++. -..+|+.|+++++....++..+ .++|+.|++++|.++.. +..+ .++|+.|++.++. +..++. .
T Consensus 252 ~-L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l---p~sL~~L~Ls~N~-Lt~LP~~l 323 (754)
T PRK15370 252 R-ITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTL-PAHL---PSGITHLNVQSNS-LTALPETL 323 (754)
T ss_pred c-cCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCccccC-cccc---hhhHHHHHhcCCc-cccCCccc
Confidence 2 222221 1236777777766522233222 24677777777665531 1110 1356667776643 333433 2
Q ss_pred CCCCceEEeccCccccccccc-CCceeeEEEcCcchh--hcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccce
Q 009416 297 SPCLKTLILECCDKLIQVEIE-TPNLSIFKYHGDLIS--FSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSK 373 (535)
Q Consensus 297 ~~~L~~L~l~~c~~L~~l~~~-~p~L~~L~~~g~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~ 373 (535)
.++|+.|.+.+|. +..+... .++|+.|.++++... ...-.++|+.|+|+.+.... ++..+. .+|+
T Consensus 324 ~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~-----LP~~l~-----~sL~- 391 (754)
T PRK15370 324 PPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN-----LPENLP-----AALQ- 391 (754)
T ss_pred cccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC-----CCHhHH-----HHHH-
Confidence 3467777776653 3333321 246777777766541 11112457777775542221 222221 2455
Q ss_pred eEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416 374 VLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT 411 (535)
Q Consensus 374 ~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~ 411 (535)
.|.++.|.+. .+|+.+.. ....++++..|++...+
T Consensus 392 ~LdLs~N~L~--~LP~sl~~-~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 392 IMQASRNNLV--RLPESLPH-FRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHhhccCCcc--cCchhHHH-HhhcCCCccEEEeeCCC
Confidence 5566655554 44541111 22233566666665443
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.4e-08 Score=95.91 Aligned_cols=171 Identities=18% Similarity=0.157 Sum_probs=84.0
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC----CCcccCcccceeEeeeEee---ChhHHHHHHhCCCc
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA---DDQAIASLISGCPL 187 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~---~~~~l~~~~~~~p~ 187 (535)
.|+++.|+++.......-.-...|++++.|+|++|-+..- ....+||+|+.|+|+.|++ .+... -..++.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~ 198 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSH 198 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhhhhh
Confidence 5666666665433222212333466666666666543111 2234566666666666554 11111 113455
Q ss_pred ccEEEEeecCCCc-ee--eeCCCCCccEEEEeecCCccEEee---cCCcccEEEEeeec--ccCeEEecCcccccceeEe
Q 009416 188 IEYLEIRSCEGLE-SL--DLVNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKF 259 (535)
Q Consensus 188 Le~L~L~~c~~l~-~~--~~~~l~~L~~L~l~~c~~l~~~~~---~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~L 259 (535)
|+.|.|+.|.... .+ ....+|+|+.|.+..+..+..... -...|+.|+++++. +.+.....+.++.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 5566666654321 11 122345566665555532111111 23456666666665 2222234566777777777
Q ss_pred eccCCChHHHHH-----hcCCCCCccEEEeecCC
Q 009416 260 DFLPIEDEWLCN-----GISKLPLLEYLSMTKCH 288 (535)
Q Consensus 260 ~~~~~~~~~l~~-----l~~~~~~L~~L~L~~c~ 288 (535)
+.+.+..-.... ....+|+|+.|.+...+
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 766655422221 14567788888877644
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=5.2e-08 Score=92.15 Aligned_cols=164 Identities=17% Similarity=0.168 Sum_probs=81.5
Q ss_pred CceEEEEeccCCCCc---cCCccccCCCceeEEEEeCcccc-----CC-------CCcccCcccceeEeeeEeeC---hh
Q 009416 115 EVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQ-----QP-------SENVKLFSLRKLALREVCAD---DQ 176 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~---~lp~~l~~~~~L~~L~L~~~~~~-----~~-------~~~~~l~~L~~L~L~~~~~~---~~ 176 (535)
.+..++++.+..... .+-..+.+-++|+..++++.-.. .+ +....+|.|++|+|++|.++ ..
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 577777776543211 12223344567777777764211 11 22345677888888888773 34
Q ss_pred HHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec--ccC---eEEec
Q 009416 177 AIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY--LFP---IEVNV 248 (535)
Q Consensus 177 ~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~--~~~---~~~~~ 248 (535)
.+..++++|..|++|.|.+|..- .. .++ ..|..|. ........|.|+.+....|. +.+ +...+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~--~al~~l~------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLG-PEAGGRLG--RALFELA------VNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCC-hhHHHHHH--HHHHHHH------HHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 55566777888888888777431 11 000 0010000 00111133455555555554 111 11224
Q ss_pred CcccccceeEeeccCCChH---HHHHhcCCCCCccEEEeecC
Q 009416 249 SSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 249 ~~l~~L~~L~L~~~~~~~~---~l~~l~~~~~~L~~L~L~~c 287 (535)
...+.|+.+.+..|.+... .+..-+..||+|+.|+|.+.
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 4456666666665555432 22233455666666666663
No 26
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.37 E-value=1.4e-07 Score=64.62 Aligned_cols=37 Identities=41% Similarity=0.762 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhcc
Q 009416 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (535)
Q Consensus 12 is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~ 48 (535)
+++||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.35 E-value=6.5e-09 Score=88.33 Aligned_cols=148 Identities=19% Similarity=0.181 Sum_probs=86.2
Q ss_pred ccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCc-eeeeCCCCCccE
Q 009416 135 IFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE-SLDLVNLSNLKE 212 (535)
Q Consensus 135 l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~-~~~~~~l~~L~~ 212 (535)
++++.+++.|.|+++.+. .||.+..+.+|+.|++++|.+. .++.-++.+|+|+.|++.-+.... .-.++++|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 455666666777776663 3366666777777777666653 233335666677766665443211 113445566666
Q ss_pred EEEeec----CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeec
Q 009416 213 IILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (535)
Q Consensus 213 L~l~~c----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~ 286 (535)
|+++++ ..+..-.+.+..|+.|.++++.-..++..++.+.+|+.|.+..+.... ++.-++.++.|+.|.+.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence 666655 112222234556777777777655566777888888888877665432 122244566677777776
No 28
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=9e-07 Score=58.19 Aligned_cols=34 Identities=38% Similarity=0.692 Sum_probs=31.6
Q ss_pred CCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhcc
Q 009416 15 LPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (535)
Q Consensus 15 LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~ 48 (535)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.21 E-value=4.5e-08 Score=93.88 Aligned_cols=279 Identities=15% Similarity=0.132 Sum_probs=157.2
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc-CC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
+++-..++........+|..+- +.-+.+.|..|.+. .| ..+..+++|++|+|++|.++.-... -+.+.+.|-.|.
T Consensus 45 ~~~g~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lv 121 (498)
T KOG4237|consen 45 DVEGGIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLV 121 (498)
T ss_pred CCCCceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHH
Confidence 3333333333333344554331 45688888888773 33 5677899999999999887433322 256778888888
Q ss_pred EeecCCCcee---eeCCCCCccEEEEeec--CCc-cEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416 193 IRSCEGLESL---DLVNLSNLKEIILVNT--SDI-KRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 193 L~~c~~l~~~---~~~~l~~L~~L~l~~c--~~l-~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~ 265 (535)
+.++..++.+ .+.++.+|+.|.+..| .-+ +.....+++|..|.+.++. .......+..+.+++.+++.-+.+.
T Consensus 122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence 8887677666 4666777777776655 111 1122266778888887776 2222346777888888887655522
Q ss_pred hH----HHHH-------hcCCCCCccEEEeecCCCCccccc-CC-CCCceE---EeccC-ccc---ccccccCCceeeEE
Q 009416 266 DE----WLCN-------GISKLPLLEYLSMTKCHKLTSVRI-SS-PCLKTL---ILECC-DKL---IQVEIETPNLSIFK 325 (535)
Q Consensus 266 ~~----~l~~-------l~~~~~~L~~L~L~~c~~l~~l~~-~~-~~L~~L---~l~~c-~~L---~~l~~~~p~L~~L~ 325 (535)
.+ +... .++.+.......+.. .....+.. .+ -.++.+ -...| +.. ..-.-..|+|+.++
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYY-KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred cccccchhhhHHhhchhhcccceecchHHHHH-HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 11 0000 011111111111111 00000000 00 011111 01111 000 01112457899999
Q ss_pred EcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcc
Q 009416 326 YHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLT 400 (535)
Q Consensus 326 ~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~ 400 (535)
++++.. -.|.++.++++|++..+.... .-...++ ++..|+ .|.++.|.++ ...|. .+..+.
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~----v~~~~f~---~ls~L~-tL~L~~N~it-~~~~~-----aF~~~~ 346 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEF----VSSGMFQ---GLSGLK-TLSLYDNQIT-TVAPG-----AFQTLF 346 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHHH----HHHHhhh---ccccce-eeeecCCeeE-EEecc-----cccccc
Confidence 988876 567888999999997653332 2244567 799999 8888877777 23333 566788
Q ss_pred cceeeEEEEee
Q 009416 401 SVKKLNYSVRT 411 (535)
Q Consensus 401 ~L~~L~l~~~~ 411 (535)
+|.+|.+-..|
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 99999987544
No 30
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.18 E-value=4.8e-09 Score=100.53 Aligned_cols=259 Identities=19% Similarity=0.144 Sum_probs=148.4
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.++.+.+..++ ...+-..+.++..|++|++.++.+ ..|+.++.+..++.|+.+.+++. .++.-+...++|..|+.
T Consensus 46 ~l~~lils~N~--l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHND--LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCc--hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhc
Confidence 34444444432 334555567788899999999887 55688899999999999988763 23334566778888877
Q ss_pred eecCCCcee-eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHh
Q 009416 194 RSCEGLESL-DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (535)
Q Consensus 194 ~~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l 272 (535)
+++...+-. .++. +-.|+.++..++.....+..+.++.+|..+.+.++.+..-....
T Consensus 122 s~n~~~el~~~i~~---------------------~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~- 179 (565)
T KOG0472|consen 122 SSNELKELPDSIGR---------------------LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENH- 179 (565)
T ss_pred cccceeecCchHHH---------------------HhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHH-
Confidence 776533211 2222 22344444444443334556666777777777766654422222
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCceEEeccCc--ccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecc
Q 009416 273 ISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSH 350 (535)
Q Consensus 273 ~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~ 350 (535)
+ +...|++|+... +.++.+|.....+++|+.-+.. ++..+ ..|+++..|++++++.+..
T Consensus 180 i-~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-----------------Pef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 180 I-AMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFL-----------------PEFPGCSLLKELHVGENQI 240 (565)
T ss_pred H-HHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccC-----------------CCCCccHHHHHHHhcccHH
Confidence 1 145566665543 2244455433333322221110 01111 2455677788877755433
Q ss_pred cchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccch
Q 009416 351 LMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSI 430 (535)
Q Consensus 351 ~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 430 (535)
.. ...+... +++++. +|++..|.++ .+|. .+-.+.+|.+|+++ +++. .++
T Consensus 241 ~~----lpae~~~---~L~~l~-vLDLRdNklk--e~Pd-----e~clLrsL~rLDlS--------------NN~i-s~L 290 (565)
T KOG0472|consen 241 EM----LPAEHLK---HLNSLL-VLDLRDNKLK--EVPD-----EICLLRSLERLDLS--------------NNDI-SSL 290 (565)
T ss_pred Hh----hHHHHhc---ccccce-eeeccccccc--cCch-----HHHHhhhhhhhccc--------------CCcc-ccC
Confidence 33 2244555 788888 7888777777 7777 55567788888886 2333 333
Q ss_pred hHHhhhhhccCcccceEEEeecC
Q 009416 431 ANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 431 ~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
+. -+.+. +|+.|.++..|
T Consensus 291 p~----sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 291 PY----SLGNL-HLKFLALEGNP 308 (565)
T ss_pred Cc----ccccc-eeeehhhcCCc
Confidence 33 34443 77788887666
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=2.6e-07 Score=81.70 Aligned_cols=128 Identities=19% Similarity=0.127 Sum_probs=38.2
Q ss_pred CCCceeEEEEeCccccCCCCcc-cCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-eeCCCCCccEEE
Q 009416 137 YVESLHVLELSYCKLQQPSENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEII 214 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~~~l~~L~~L~ 214 (535)
++.++++|+|+++.+......+ .+.+|+.|++++|.+.. +.. +..++.|++|++++|....-- .+.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~--------- 84 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLD--------- 84 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHH---------
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchH---------
Confidence 4456778888888775544454 46778888888777632 221 345677777777776532110 111
Q ss_pred EeecCCccEEeecCCcccEEEEeeec--ccCeEEecCcccccceeEeeccCCChHH--HHHhcCCCCCccEEEeecC
Q 009416 215 LVNTSDIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 215 l~~c~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~L~~~~~~~~~--l~~l~~~~~~L~~L~L~~c 287 (535)
..+|+|+.|.++++. ...-...+..+++|+.|++.+|+++... -..++..+|+|+.|+-...
T Consensus 85 -----------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 -----------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -----------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -----------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 023444444444443 1011123456677777777777665421 2223455777777776653
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.13 E-value=2e-08 Score=85.40 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=81.5
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++..|.++.+. ...+|+.+..+.+|+.|+++++.+ ..|.++..++.|+.|++.-|+.. .++.-++++|.||.|++
T Consensus 34 ~ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCc--eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhc
Confidence 34445554432 335666666666777777777666 34466666677777766555431 22333566677777777
Q ss_pred eecCCCcee---eeCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCCh
Q 009416 194 RSCEGLESL---DLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (535)
Q Consensus 194 ~~c~~l~~~---~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 266 (535)
.++..-+.. .+..+..|+.|.++.+ ..+..-.-.+.+|+-|.+.++.....+..++.+..|+.|++.++..+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 666543222 1122344555555444 111111123455555666665534456677788888888888776543
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.11 E-value=1.7e-05 Score=87.76 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=83.0
Q ss_pred CceeEEEEeCccccCCCCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEE
Q 009416 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL 215 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l 215 (535)
...+.+.+-++.+...+....++.|++|-+.++.. -.......+..+|.|+.|+|++|..+..+ .++.+-+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 56667777766654334445556788887777641 11111223556788888888887777666 5666777888887
Q ss_pred eecCCccEEee---cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCC--ChHHHHHhcCCCCCccEEEeec
Q 009416 216 VNTSDIKRVEI---KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI--EDEWLCNGISKLPLLEYLSMTK 286 (535)
Q Consensus 216 ~~c~~l~~~~~---~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~--~~~~l~~l~~~~~~L~~L~L~~ 286 (535)
+++ .+..++. .+..|.+|++..+. ...++.....+++|++|.+..... +...+.. +.++.+|+.|.+..
T Consensus 603 ~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 603 SDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITI 677 (889)
T ss_pred cCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeec
Confidence 776 3334443 34455566665554 112223334477777777764432 2222233 35555666665544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.10 E-value=7.5e-07 Score=78.79 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=34.5
Q ss_pred CceEEEEeccCCCCccCCcccc-CCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++|+|..+... .+ ..++ .+.+|+.|+|++|.+.....+..++.|++|++++|.++.-. ..+...||+|++|.+
T Consensus 20 ~~~~L~L~~n~I~--~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIS--TI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-
T ss_pred ccccccccccccc--cc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEEC
Confidence 5777888765432 22 2354 46899999999999977677888999999999999984321 122346899999999
Q ss_pred eecCCC--cee-eeCCCCCccEEEEeec
Q 009416 194 RSCEGL--ESL-DLVNLSNLKEIILVNT 218 (535)
Q Consensus 194 ~~c~~l--~~~-~~~~l~~L~~L~l~~c 218 (535)
++|..- ..+ .+..+++|+.|++.++
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 988642 222 3344566666665554
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.08 E-value=5.8e-07 Score=85.19 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=67.4
Q ss_pred cCCceeeEEEcCcch---------hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecccc---
Q 009416 317 ETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGEN--- 384 (535)
Q Consensus 317 ~~p~L~~L~~~g~~~---------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~--- 384 (535)
..|+|+.+.+..++. ..++..+.|+.+.+..+......+..+..-+. +.++|+ +|.|..|.++.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~---~~~~Le-vLdl~DNtft~egs 230 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE---HCPHLE-VLDLRDNTFTLEGS 230 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH---hCCcce-eeecccchhhhHHH
Confidence 345666666555443 34566678888888655221101224455566 788888 88887665542
Q ss_pred ccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeec
Q 009416 385 VIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHG 452 (535)
Q Consensus 385 ~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~ 452 (535)
.++.. .++.+++|+.|++..|- +++. |-..+...+-+..|+|+.|.+..+
T Consensus 231 ~~Lak-----aL~s~~~L~El~l~dcl---------l~~~----Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 231 VALAK-----ALSSWPHLRELNLGDCL---------LENE----GAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHH-----Hhcccchheeecccccc---------cccc----cHHHHHHHHhccCCCCceeccCcc
Confidence 11223 56677788888886443 2222 345566666677788888887643
No 36
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=5.8e-06 Score=89.00 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=92.8
Q ss_pred CceeEEEEeCccccC---C-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEE
Q 009416 139 ESLHVLELSYCKLQQ---P-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~---~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~ 214 (535)
.+|++|++++...-. + .....||+|++|.+++..+....+..+..++|+|..|+++++..-.-..++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 566666666643211 1 122357778888777777755556666777788888887777533223556666777776
Q ss_pred EeecCCcc--EE-e-ecCCcccEEEEeeec--ccC-----eEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEE
Q 009416 215 LVNTSDIK--RV-E-IKTSNVNALAIHQTY--LFP-----IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (535)
Q Consensus 215 l~~c~~l~--~~-~-~~~~~L~~L~l~~~~--~~~-----~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 283 (535)
+.+-.-.. .+ . +.+.+|+.|+++... ..+ ....-..+|+|+.|+.+++.+..+.+..++..-|+|+...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 65431111 00 0 256677777777654 111 0111234889999999999999998888888888888777
Q ss_pred eecC
Q 009416 284 MTKC 287 (535)
Q Consensus 284 L~~c 287 (535)
.-+|
T Consensus 282 ~~~~ 285 (699)
T KOG3665|consen 282 ALDC 285 (699)
T ss_pred hhhh
Confidence 6653
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.75 E-value=8.2e-06 Score=75.86 Aligned_cols=125 Identities=20% Similarity=0.192 Sum_probs=75.4
Q ss_pred CcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec--CCccEEeecCCcccEEEEe
Q 009416 160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIH 237 (535)
Q Consensus 160 l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~ 237 (535)
.+.|++|+|++|.++ .+..-+.-.|.++.|++++|....--.+..+++|+.|+++++ ..+..+...+-++++|.+.
T Consensus 283 Wq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 346777777777652 122223446777888877776543224555677888887776 3444444456677777777
Q ss_pred eecccCeEEecCcccccceeEeeccCCCh-HHHHHhcCCCCCccEEEeecCC
Q 009416 238 QTYLFPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 238 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
++.... ...++.+-+|..|++++|.+.. +.... ++++|.|++|.+.+.+
T Consensus 361 ~N~iE~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIET-LSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhh-hhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence 665111 1123344466777777777655 33344 6778888888777754
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.67 E-value=1.2e-05 Score=89.01 Aligned_cols=174 Identities=20% Similarity=0.237 Sum_probs=92.3
Q ss_pred CceEEEEeccCCCCccCCccccC-CCceeEEEEeCccc--cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFY-VESLHVLELSYCKL--QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
.++.|-+.........++..++. ++.|++|||++|.- ..|..++.+-+||+|+++++.+. .++.-+.++..|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhhee
Confidence 34454444332113345554444 68888888887643 45567788888888888888764 344446677788888
Q ss_pred EEeecCCCcee-ee-CCCCCccEEEEeecC-CccEEe----ecCCcccEEEEeeecccCeEEecCcccccceeEeecc--
Q 009416 192 EIRSCEGLESL-DL-VNLSNLKEIILVNTS-DIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL-- 262 (535)
Q Consensus 192 ~L~~c~~l~~~-~~-~~l~~L~~L~l~~c~-~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~-- 262 (535)
++..+..+..+ .+ ..+++|++|.+..-. ...... ..+.+|+.+.+..... .+...+..+..|.++...-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhc
Confidence 88877665544 22 236788888776542 111111 1233444444432221 11112233333332211100
Q ss_pred CCChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (535)
Q Consensus 263 ~~~~~~l~~l~~~~~~L~~L~L~~c~~l~ 291 (535)
..........+..+++|+.|.+.+|...+
T Consensus 703 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 703 GCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ccccceeecccccccCcceEEEEcCCCch
Confidence 01111122224567788888888887654
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.58 E-value=7.3e-06 Score=79.06 Aligned_cols=250 Identities=13% Similarity=0.110 Sum_probs=131.3
Q ss_pred CCccEEeecC-CcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcccccC
Q 009416 219 SDIKRVEIKT-SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS 296 (535)
Q Consensus 219 ~~l~~~~~~~-~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~ 296 (535)
.++.+++.++ +.-..+++..+....+ +..|+.+++|+.|+|+.|.++...+.. +.++++|-+|.+.+..+++.++..
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHhhcCCchhhhhhh
Confidence 4555555543 3555666666662222 346778888888888888877665555 667777877877776667666651
Q ss_pred -C---CCCceEEecc--Cccc-ccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEec------c--------
Q 009416 297 -S---PCLKTLILEC--CDKL-IQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS------H-------- 350 (535)
Q Consensus 297 -~---~~L~~L~l~~--c~~L-~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~------~-------- 350 (535)
+ .+|+.|.+.- |.-+ +...-+.++|..|.+.++.. -.++++.+++.+.+..++ .
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 1 2333333321 1111 12222334444444443332 122333333333221100 0
Q ss_pred --------------------------------------------cchhhHhHHHHHhhhhcccccceeEEEEeecccccc
Q 009416 351 --------------------------------------------LMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVI 386 (535)
Q Consensus 351 --------------------------------------------~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~ 386 (535)
...+..-....+. .+++|+ +|.++.|.++ .
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~---~L~~L~-~lnlsnN~i~--~ 288 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFK---KLPNLR-KLNLSNNKIT--R 288 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHh---hcccce-EeccCCCccc--h
Confidence 0000001123345 677777 7777766555 2
Q ss_pred ccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecCC-----Ccceeee
Q 009416 387 VPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHL-----HKFSFQI 461 (535)
Q Consensus 387 ~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~~-----~~~~~~~ 461 (535)
+.+. ++.....++.|+|.. .+++.+-..+|+....|++|++..+.. -.|.. .
T Consensus 289 i~~~----aFe~~a~l~eL~L~~------------------N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-~ 345 (498)
T KOG4237|consen 289 IEDG----AFEGAAELQELYLTR------------------NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT-L 345 (498)
T ss_pred hhhh----hhcchhhhhhhhcCc------------------chHHHHHHHhhhccccceeeeecCCeeEEEecccccc-c
Confidence 3221 444566777777752 467778888899889999999985441 22210 0
Q ss_pred hhhhhhhhcCCCCcc-ccCCCcccccccccceeeeeec
Q 009416 462 SYKKQLIYDGEIPRC-CQSLPVSCWQHCINEVKVEHTK 498 (535)
Q Consensus 462 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~lk~v~i~~~~ 498 (535)
..-.++....++.+| |...+...|...-..+....++
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ 383 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence 011113334466677 8888877776544444444443
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=2.4e-05 Score=72.80 Aligned_cols=179 Identities=18% Similarity=0.145 Sum_probs=122.7
Q ss_pred hcCceEEEEeccCCC-CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416 113 ESEVKELVLVHWRSE-RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le 189 (535)
...+++++|..+... ...+-..+.++|.|+.|+|+.|.+..+ .......+|++|.|.+..++-......+...|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 457888988764321 223444456789999999999988654 12246679999999999886667777788999999
Q ss_pred EEEEeecCC----CceeeeCC-CCCccEEEEeecC-----CccEEeecCCcccEEEEeeec--ccCeEEecCccccccee
Q 009416 190 YLEIRSCEG----LESLDLVN-LSNLKEIILVNTS-----DIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCL 257 (535)
Q Consensus 190 ~L~L~~c~~----l~~~~~~~-l~~L~~L~l~~c~-----~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L 257 (535)
+|.++.|.. +..-.+.. .+.+++|....|. ....+....|++.++.+..+. +.........+|.+-.|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 999988832 11112221 2578888888882 222333457889988888775 22223345567777888
Q ss_pred EeeccCCChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (535)
Q Consensus 258 ~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~ 291 (535)
.|+.+.+..-+...-+.++|.|..|.+.+.+-..
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 8888877654444447889999999998865443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.45 E-value=6.7e-05 Score=69.95 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=29.2
Q ss_pred cCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 242 ~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
++....+...+.|+.++|++|.++... +-..-.|.++.|+++..
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~~iD--ESvKL~Pkir~L~lS~N 317 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLITQID--ESVKLAPKLRRLILSQN 317 (490)
T ss_pred CceEEecchHhhhhhccccccchhhhh--hhhhhccceeEEecccc
Confidence 444555666778889999888775421 11234688888888874
No 42
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.44 E-value=1.8e-05 Score=83.22 Aligned_cols=125 Identities=22% Similarity=0.296 Sum_probs=84.4
Q ss_pred hcCceEEEEeccCC-CCccCCccccCCCceeEEEEeCc-ccc--CC----CCcccCcccceeEeeeEe-eChhHHHHHHh
Q 009416 113 ESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYC-KLQ--QP----SENVKLFSLRKLALREVC-ADDQAIASLIS 183 (535)
Q Consensus 113 ~~~l~~L~L~~~~~-~~~~lp~~l~~~~~L~~L~L~~~-~~~--~~----~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~ 183 (535)
.++++++.+..+.. ....+-.....+++|+.|++++| ... .+ .....+++|+.|+++.+. +++..+..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46888888876532 21123344567899999999873 221 11 233467899999999887 68888888888
Q ss_pred CCCcccEEEEeecCCCceee----eCCCCCccEEEEeecCCccE-----EeecCCcccEEEEe
Q 009416 184 GCPLIEYLEIRSCEGLESLD----LVNLSNLKEIILVNTSDIKR-----VEIKTSNVNALAIH 237 (535)
Q Consensus 184 ~~p~Le~L~L~~c~~l~~~~----~~~l~~L~~L~l~~c~~l~~-----~~~~~~~L~~L~l~ 237 (535)
.||+|++|.+..|..+.... ...+++|+.|++++|..+.. +...+++|+.|.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 89999999988888654332 23468899999999955422 22256666665543
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=5.1e-05 Score=70.70 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=35.9
Q ss_pred CceeEEEEeCccccCC----CCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecC
Q 009416 139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCE 197 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~ 197 (535)
..+..|.+.+|.+... ......+.++.|+|.+|.+ .-..+..++..+|.|+.|+|+.|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 3444566666665433 1113456777777777777 334566667777777777776664
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.27 E-value=9.7e-05 Score=53.25 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=33.7
Q ss_pred CceeEEEEeCcccc-CC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416 139 ESLHVLELSYCKLQ-QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE 197 (535)
Q Consensus 139 ~~L~~L~L~~~~~~-~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~ 197 (535)
|+|++|++++|.+. .+ ..+..+++|++|++++|.+..- .+..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 45667777776653 22 3455667777777776665321 11235666777777776664
No 45
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=3.9e-05 Score=80.68 Aligned_cols=124 Identities=22% Similarity=0.272 Sum_probs=85.2
Q ss_pred CCCceeEEEEeCccccCC----CCcccCcccceeEeeeE-ee---ChhHHHHHHhCCCcccEEEEeecCCCceeeeC---
Q 009416 137 YVESLHVLELSYCKLQQP----SENVKLFSLRKLALREV-CA---DDQAIASLISGCPLIEYLEIRSCEGLESLDLV--- 205 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~-~~---~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~--- 205 (535)
.++.|+.|.+..|..... +....+++|+.|+++++ .. .......+...|++|+.|++.+|..+....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 379999999999854221 45567999999999873 21 22223345678999999999999876554322
Q ss_pred -CCCCccEEEEeecCCccEEe-----ecCCcccEEEEeeecc---cCeEEecCcccccceeEee
Q 009416 206 -NLSNLKEIILVNTSDIKRVE-----IKTSNVNALAIHQTYL---FPIEVNVSSCGNLKCLKFD 260 (535)
Q Consensus 206 -~l~~L~~L~l~~c~~l~~~~-----~~~~~L~~L~l~~~~~---~~~~~~~~~l~~L~~L~L~ 260 (535)
.+++|+.|.+.+|..+.... -.+++|++|++.++.. ........++++|+.|.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 27899999998896543333 3789999999998872 1122224557777776554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.15 E-value=6.5e-05 Score=78.05 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=104.2
Q ss_pred cCCCCCceeEEEEEEecCCCCCChhhHHHHH-HHHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCC
Q 009416 78 RQRKMISIKKFSLELDLINSPENASLAGRCL-GLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSE 156 (535)
Q Consensus 78 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl-~~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~ 156 (535)
....+++++.|+...... .+...+...- -.-+.+..+.+.+-........=|-.++.+.+|++|.|++|.+.....
T Consensus 50 lg~~g~~~~~f~a~~s~~---ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~G 126 (1096)
T KOG1859|consen 50 LGLSGAPVDYFRAYVSDN---ADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKG 126 (1096)
T ss_pred hccCCCCCceeEEecCCc---ccchHHHHHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhh
Confidence 345567888888765432 2222222211 112234566666655332222227788899999999999997743311
Q ss_pred cccC-ccccee--------------------------------EeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceee
Q 009416 157 NVKL-FSLRKL--------------------------------ALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD 203 (535)
Q Consensus 157 ~~~l-~~L~~L--------------------------------~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~ 203 (535)
+..+ ..|++| +.+.|.+ ..+..-+.-.|.||.|+|+.|...+--.
T Consensus 127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~ 204 (1096)
T KOG1859|consen 127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDN 204 (1096)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHH
Confidence 1111 011111 1111211 0011112234667777777765433224
Q ss_pred eCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccE
Q 009416 204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (535)
Q Consensus 204 ~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 281 (535)
+..++.|++|+++.+ ..+..+......|..|.+.+|.... ...+.++.+|+.|++++|-+.+..--..+..+..|+.
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 445677777777665 3333333322236777777666111 2345667777777777776665433333444556666
Q ss_pred EEeec
Q 009416 282 LSMTK 286 (535)
Q Consensus 282 L~L~~ 286 (535)
|.|.|
T Consensus 284 L~LeG 288 (1096)
T KOG1859|consen 284 LWLEG 288 (1096)
T ss_pred HhhcC
Confidence 66666
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.12 E-value=0.00081 Score=67.18 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=17.0
Q ss_pred CccEEEeecCCCCccccc-CCCCCceEEeccCcccc
Q 009416 278 LLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLI 312 (535)
Q Consensus 278 ~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~ 312 (535)
+|+.|.+.+|..++.++. .+.+|++|.+.+|.++.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS 108 (426)
T ss_pred CCcEEEccCCCCcccCCchhhhhhhheEccCccccc
Confidence 355555555555544443 22345555555554443
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=0.0002 Score=77.31 Aligned_cols=132 Identities=18% Similarity=0.123 Sum_probs=88.9
Q ss_pred HHHHHHHhcCceEEEEeccCCCCccCCccccC-CCceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHH
Q 009416 106 RCLGLAIESEVKELVLVHWRSERRNLPEIIFY-VESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASL 181 (535)
Q Consensus 106 ~wl~~~~~~~l~~L~L~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~ 181 (535)
..+....+.++++|++.....-...-|..++. +|+|++|.+++-.+... ....+||+|..||++++.++.- ..
T Consensus 114 ~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~G 190 (699)
T KOG3665|consen 114 DLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SG 190 (699)
T ss_pred HHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HH
Confidence 33444556789999987744333344444554 59999999988666332 3346789999999999887432 33
Q ss_pred HhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeecCCccEE---------eecCCcccEEEEeeec
Q 009416 182 ISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRV---------EIKTSNVNALAIHQTY 240 (535)
Q Consensus 182 ~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~---------~~~~~~L~~L~l~~~~ 240 (535)
++.+++||.|.+.+-.....- .+.++.+|+.|+++.-...... ...+|+|+.|+.+|..
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 678888988888776654322 5667889999999876322211 1257899999988776
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.93 E-value=0.0003 Score=50.67 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=32.8
Q ss_pred CcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416 229 SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 229 ~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
|+|+.|++.++.-..+ ...+.++++|++|+++++.+..-. ...+.++++|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 3455555555541111 234566777777777766665332 223667777777777764
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.88 E-value=0.0037 Score=62.60 Aligned_cols=134 Identities=16% Similarity=0.256 Sum_probs=63.2
Q ss_pred cCcccceeEeeeEeeChhHHHHHHhCCC-cccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEe
Q 009416 159 KLFSLRKLALREVCADDQAIASLISGCP-LIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237 (535)
Q Consensus 159 ~l~~L~~L~L~~~~~~~~~l~~~~~~~p-~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~ 237 (535)
.+++++.|++++|.+.. ++ .+| +|++|.+++|..+..+.-.-.++|++|.+++|..+..++ ++|+.|.+.
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~ 120 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIK 120 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeC
Confidence 35667777776664421 11 122 477777776666544321112467777777665554332 356666654
Q ss_pred eecccCeEEecCccc-ccceeEeeccCCChHHHHHhcCCC-CCccEEEeecCCCCcccccCCCCCceEEecc
Q 009416 238 QTYLFPIEVNVSSCG-NLKCLKFDFLPIEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRISSPCLKTLILEC 307 (535)
Q Consensus 238 ~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~~-~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~ 307 (535)
++.. ..+..+| +|+.|.+.+..... ...+...+ ++|+.|.+.+|.........+.+|+.|.++.
T Consensus 121 ~n~~----~~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 121 GSAT----DSIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred CCCC----cccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 3331 1123332 45555553221100 00000112 3677777776664431111234666666654
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.86 E-value=0.00052 Score=70.25 Aligned_cols=165 Identities=22% Similarity=0.242 Sum_probs=84.9
Q ss_pred CCCceeEEEEeCccccCC-CCcccCc-ccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeC-CCCCccEE
Q 009416 137 YVESLHVLELSYCKLQQP-SENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKEI 213 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~-~~~~~l~-~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~-~l~~L~~L 213 (535)
..+.++.|++.++.+... +....+. +|+.|+++++.+.. ++.-+..+|.|+.|++.+|....--... ..+.|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 335667777777666332 3334442 67777777666532 2122456677777777766543222221 44666667
Q ss_pred EEeecCCccEEee---cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCC
Q 009416 214 ILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL 290 (535)
Q Consensus 214 ~l~~c~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l 290 (535)
.++++ .+..++. ....|+++.+.++........+..+.++..+.+..+.+... ...+..+++++.|++.++..
T Consensus 192 ~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i- 267 (394)
T COG4886 192 DLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQI- 267 (394)
T ss_pred eccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceeccccccc-
Confidence 66665 2222222 22336677776663222234455566666666555544331 22245566677777776432
Q ss_pred ccccc--CCCCCceEEecc
Q 009416 291 TSVRI--SSPCLKTLILEC 307 (535)
Q Consensus 291 ~~l~~--~~~~L~~L~l~~ 307 (535)
..++. ...+++.|++++
T Consensus 268 ~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 268 SSISSLGSLTNLRELDLSG 286 (394)
T ss_pred cccccccccCccCEEeccC
Confidence 22221 224555555543
No 52
>PLN03150 hypothetical protein; Provisional
Probab=96.69 E-value=0.0019 Score=69.92 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=70.7
Q ss_pred ceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEE
Q 009416 140 SLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL 215 (535)
Q Consensus 140 ~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l 215 (535)
.++.|+|+++.+. .+..+..+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|...+.+ .+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3788999998873 34667889999999999988753 23444778999999999998765544 4667889999999
Q ss_pred eecCCccEEee----cCCcccEEEEeeec
Q 009416 216 VNTSDIKRVEI----KTSNVNALAIHQTY 240 (535)
Q Consensus 216 ~~c~~l~~~~~----~~~~L~~L~l~~~~ 240 (535)
++|.--..++. ...++..+.+.++.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 88832222221 12345567776665
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.67 E-value=0.00045 Score=70.68 Aligned_cols=169 Identities=22% Similarity=0.217 Sum_probs=118.8
Q ss_pred cCceEEEEeccCCCCccCCccccCCC-ceeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVE-SLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
..+..+.+.... ...+|......+ +|+.|+++++.+... .....+++|+.|+++.|.+.+ +.......+.|+.|
T Consensus 116 ~~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhe
Confidence 357777776543 457888777774 999999999988654 578899999999999998743 33334478999999
Q ss_pred EEeecCCCceeee--CCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChH
Q 009416 192 EIRSCEGLESLDL--VNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE 267 (535)
Q Consensus 192 ~L~~c~~l~~~~~--~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 267 (535)
+++++.. ..+.. .....|++|.+.++....... ....++..+.+.++........++.+++++.|+++++.++..
T Consensus 192 ~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 192 DLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred eccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence 9999864 33322 233458888888874332222 255666666665555322245677888899999998887764
Q ss_pred HHHHhcCCCCCccEEEeecCCCC
Q 009416 268 WLCNGISKLPLLEYLSMTKCHKL 290 (535)
Q Consensus 268 ~l~~l~~~~~~L~~L~L~~c~~l 290 (535)
.. +....+|+.|++++....
T Consensus 271 ~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 271 SS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cc---ccccCccCEEeccCcccc
Confidence 33 567889999999885433
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.00059 Score=62.88 Aligned_cols=104 Identities=26% Similarity=0.258 Sum_probs=70.1
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L 193 (535)
.++.+.++.+......+....-....|+.|++.++.++....+-.+|+|++|.++.|.. ....+..++..||+|++|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL 98 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence 45556666654444445554445678888888888887666777889999999999944 22334445667899999999
Q ss_pred eecCCC--cee-eeCCCCCccEEEEeec
Q 009416 194 RSCEGL--ESL-DLVNLSNLKEIILVNT 218 (535)
Q Consensus 194 ~~c~~l--~~~-~~~~l~~L~~L~l~~c 218 (535)
+.|..- ..+ .+..+.+|..|++.+|
T Consensus 99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 99 SGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cCCccccccccchhhhhcchhhhhcccC
Confidence 998642 222 2334566666666666
No 55
>PLN03150 hypothetical protein; Provisional
Probab=96.44 E-value=0.0026 Score=68.81 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=67.2
Q ss_pred ccEEEEeecCCccEEe---ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEee
Q 009416 210 LKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (535)
Q Consensus 210 L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~ 285 (535)
++.|++.++.--..++ ..+++|+.|+++++. .+.++..++.+++|+.|+|++|.+++..+.. +.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 6667776662111111 256788888888887 5566667888899999999988888766555 6788899999998
Q ss_pred cCCCCcccccCC----CCCceEEeccCcc
Q 009416 286 KCHKLTSVRISS----PCLKTLILECCDK 310 (535)
Q Consensus 286 ~c~~l~~l~~~~----~~L~~L~l~~c~~ 310 (535)
++...+.+|... .++..+.+.+.+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 876555555422 2344555554433
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.37 E-value=0.0019 Score=42.81 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=15.7
Q ss_pred ceeEEEEeCccccCCCC-cccCcccceeEeeeEee
Q 009416 140 SLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCA 173 (535)
Q Consensus 140 ~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~ 173 (535)
+|++|++++|.+...+. +.++++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45555555555532222 45555555555555544
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00029 Score=65.19 Aligned_cols=96 Identities=22% Similarity=0.186 Sum_probs=72.1
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L 193 (535)
+++.|+..+|+.....+ ...++.|++|.|+-|.+.....+..|+.|+.|.|..|.+ +...+.. +.+.|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhh
Confidence 66777776665443322 346799999999999997778889999999999999998 4444544 689999999999
Q ss_pred eecCCCcee-------eeCCCCCccEEE
Q 009416 194 RSCEGLESL-------DLVNLSNLKEII 214 (535)
Q Consensus 194 ~~c~~l~~~-------~~~~l~~L~~L~ 214 (535)
..|+..+.- .+..+|+|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 998875432 344567777775
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.96 E-value=0.0011 Score=61.02 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=16.4
Q ss_pred cccccceeEeeccCCCh-HHHHHhcCCCCCccEEEeecCC
Q 009416 250 SCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 250 ~l~~L~~L~L~~~~~~~-~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
.+|+|++|.+++|.+.. ..+.. +..+.+|..|++.+|.
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred hCCceeEEeecCCccccccccch-hhhhcchhhhhcccCC
Confidence 33444444444444432 11111 2344555555555553
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.87 E-value=0.019 Score=51.11 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=15.8
Q ss_pred ceeEEEEeCccccCCCCcccCcccceeEeeeEee
Q 009416 140 SLHVLELSYCKLQQPSENVKLFSLRKLALREVCA 173 (535)
Q Consensus 140 ~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~ 173 (535)
+...++|++|.+.....+..++.|.+|.+.+|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI 76 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI 76 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcc
Confidence 3444455555443323334445555555555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.85 E-value=0.013 Score=52.02 Aligned_cols=99 Identities=19% Similarity=0.255 Sum_probs=64.4
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC-CCc-ccCcccceeEeeeEee-ChhHHHHHHhCCCcccEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SEN-VKLFSLRKLALREVCA-DDQAIASLISGCPLIEYL 191 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~~~-~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L 191 (535)
....++|+.+.. ..++ .+...+.|..|.|++|++... +.+ ..+|+|+.|.|.+|++ .-+.+.. +..||.|++|
T Consensus 43 ~~d~iDLtdNdl--~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDL--RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYL 118 (233)
T ss_pred ccceecccccch--hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCcccee
Confidence 344555554332 2222 234679999999999988433 444 4578999999999988 4444554 5689999999
Q ss_pred EEeecCCCc-----eeeeCCCCCccEEEEee
Q 009416 192 EIRSCEGLE-----SLDLVNLSNLKEIILVN 217 (535)
Q Consensus 192 ~L~~c~~l~-----~~~~~~l~~L~~L~l~~ 217 (535)
.+-+|+.-. ...+..+|+|+.|++.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 999887532 22344455666655543
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.42 E-value=0.0053 Score=56.91 Aligned_cols=124 Identities=16% Similarity=0.096 Sum_probs=59.9
Q ss_pred cccCcccceeEeeeEeeC---hhHHHHHHhCCCcccEEEEeecCCCceeeeCCC-CCccEEEEeecCCccEEeecCCccc
Q 009416 157 NVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSCEGLESLDLVNL-SNLKEIILVNTSDIKRVEIKTSNVN 232 (535)
Q Consensus 157 ~~~l~~L~~L~L~~~~~~---~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~L~ 232 (535)
...||.|++.+|+.|.++ .+.+..+++.-+.|++|.+.+|. ++.+.-... ..|.+| ....-..+.|.|+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~l------a~nKKaa~kp~Le 160 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHL------AYNKKAADKPKLE 160 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHH------HHHhhhccCCCce
Confidence 345566666666666552 23344445555666666665553 222110000 001000 0001112456777
Q ss_pred EEEEeeec--ccCe---EEecCcccccceeEeeccCCChHHHHHh----cCCCCCccEEEeecC
Q 009416 233 ALAIHQTY--LFPI---EVNVSSCGNLKCLKFDFLPIEDEWLCNG----ISKLPLLEYLSMTKC 287 (535)
Q Consensus 233 ~L~l~~~~--~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~l----~~~~~~L~~L~L~~c 287 (535)
+.....+. .++. ...+.+-.+|+.+.+..|.+.......+ +..+.+|+.|+|.+.
T Consensus 161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred EEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 77776665 2221 1123333578888888777766532221 235667777777763
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.26 E-value=0.0095 Score=56.58 Aligned_cols=37 Identities=38% Similarity=0.595 Sum_probs=35.1
Q ss_pred CCcCCCCC----HHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416 9 VDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (535)
Q Consensus 9 ~D~is~LP----deiL~~Ils~L~~~d~~r~s~vskrWr~l 45 (535)
.|.|+.|| ++|...||+||+..+++.|-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 58999999 99999999999999999999999999964
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.81 E-value=0.0016 Score=66.20 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=89.1
Q ss_pred cCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-eeCCCC
Q 009416 130 NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLS 208 (535)
Q Consensus 130 ~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~~~l~ 208 (535)
.+|..+.++..|++|+|+.|.+...+.-..+--|+.|-+++|+++.. +.-++..+.|..|+.+.|....-. .+.++.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccC--CcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 56666777777777777777764332222333477777777766321 112345667777777766532211 344456
Q ss_pred CccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHH-hcCCCCCccEEEee
Q 009416 209 NLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN-GISKLPLLEYLSMT 285 (535)
Q Consensus 209 ~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~-l~~~~~~L~~L~L~ 285 (535)
+|+.|.+..+. +..++ +..-.|.+|+++.|....+++.|..+..|+.|.|.+|.+.....+- .-+...--++|++.
T Consensus 190 slr~l~vrRn~-l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 190 SLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred HHHHHHHhhhh-hhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 66666666551 11111 1133577788887776667888888999999999888775422111 11223334556665
Q ss_pred cC
Q 009416 286 KC 287 (535)
Q Consensus 286 ~c 287 (535)
-|
T Consensus 269 A~ 270 (722)
T KOG0532|consen 269 AC 270 (722)
T ss_pred hc
Confidence 55
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.72 E-value=0.02 Score=37.89 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=18.0
Q ss_pred ccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416 253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 253 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
+|++|+++++.+++- ...+.++++|+.|+++++
T Consensus 2 ~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDL--PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCccc--CchHhCCCCCCEEEecCC
Confidence 456666666666542 222556667777776665
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.52 E-value=0.00077 Score=70.38 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=52.5
Q ss_pred eeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCC--CceeeeCCCCCccEEEEee
Q 009416 141 LHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG--LESLDLVNLSNLKEIILVN 217 (535)
Q Consensus 141 L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~--l~~~~~~~l~~L~~L~l~~ 217 (535)
|...+.++|.+... .+..-++.|+.|+|+.|++..- . .+..|+.|++|+|++|.. +..+...++ .|..|.+++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 44444445544222 4444556666666666655321 1 134566666666666532 223333333 255555555
Q ss_pred c--CCccEEeecCCcccEEEEeeec--ccCeEEecCcccccceeEeeccCC
Q 009416 218 T--SDIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 218 c--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
+ ..+..+. ++.+|+.|+++.|. ...-...+..+..|+.|.|.+|.+
T Consensus 242 N~l~tL~gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLRGIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhhhHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4 1111110 33445555555443 111111233444455555555443
No 66
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.27 E-value=0.031 Score=52.90 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=32.6
Q ss_pred CCCCcCCCCCHHHHHHHHc-----CCChhHHHHHhhhhhhhHHh
Q 009416 7 LEVDGISTLPEPILHHILS-----FLPFKEVAQTCLLSKRWKQV 45 (535)
Q Consensus 7 ~~~D~is~LPdeiL~~Ils-----~L~~~d~~r~s~vskrWr~l 45 (535)
++.+.|+.||||||..||. .++.+++.++|+|||.|+..
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 3345678999999999997 45679999999999999853
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.0043 Score=57.71 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=54.2
Q ss_pred CCccEEEEeecCCccEEee--cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEee
Q 009416 208 SNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (535)
Q Consensus 208 ~~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~ 285 (535)
.+.+.|+.++| ++..+.+ .+|.|+.|.++-|.... ...+..|.+|++|+|..|.+.+..-...+.++|+|+.|.|.
T Consensus 19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34555666665 3444443 67778888877766221 34577899999999998888764444447899999999998
Q ss_pred cCC
Q 009416 286 KCH 288 (535)
Q Consensus 286 ~c~ 288 (535)
..+
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 743
No 68
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.87 E-value=0.051 Score=53.87 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=33.9
Q ss_pred cCCCCCHHHHHHHHcCCC-hhHHHHHhhhhhhhHHhhcc
Q 009416 11 GISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT 48 (535)
Q Consensus 11 ~is~LPdeiL~~Ils~L~-~~d~~r~s~vskrWr~lw~~ 48 (535)
..++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 478999999999999996 67999999999999986543
No 69
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.81 E-value=0.0014 Score=66.73 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=95.9
Q ss_pred ccCCccccCCCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCC-ceeeeCC
Q 009416 129 RNLPEIIFYVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL-ESLDLVN 206 (535)
Q Consensus 129 ~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l-~~~~~~~ 206 (535)
..+|..+..|..|..|.|..|.+ ..+..+.++..|+.|+|+.|.++..... +-.|| |+.|.+++|... ....+..
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lp-Lkvli~sNNkl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLP-LKVLIVSNNKLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCc-ceeEEEecCccccCCccccc
Confidence 35666666667788888887666 5557788899999999988876432222 33344 788887777542 1224455
Q ss_pred CCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEE
Q 009416 207 LSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (535)
Q Consensus 207 l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 283 (535)
.++|..|+.+.| .+..+. ..+.+|+.|.+..+....++..+..+ .|..|++++|+++.-.. . +.++..|+.|.
T Consensus 165 ~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv-~-fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 165 LPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV-D-FRKMRHLQVLQ 240 (722)
T ss_pred chhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch-h-hhhhhhheeee
Confidence 678888888777 222222 24556677766666633334444433 47778888887764222 1 55677888888
Q ss_pred eecCC
Q 009416 284 MTKCH 288 (535)
Q Consensus 284 L~~c~ 288 (535)
|.+.+
T Consensus 241 LenNP 245 (722)
T KOG0532|consen 241 LENNP 245 (722)
T ss_pred eccCC
Confidence 87744
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=0.015 Score=51.71 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=55.8
Q ss_pred cCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee---e
Q 009416 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---D 203 (535)
Q Consensus 130 ~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~ 203 (535)
.+|..-..-..++.++-+++.+... ..+.+++.++.|.+.+|.. ++..+..+-...|+|+.|+|+.|+.+++- .
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 4554333334566677666654221 4456777888888877755 66677776667788888888888877554 2
Q ss_pred eCCCCCccEEEEee
Q 009416 204 LVNLSNLKEIILVN 217 (535)
Q Consensus 204 ~~~l~~L~~L~l~~ 217 (535)
+..+++|+.|.+.+
T Consensus 172 L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhhhhHHHHhcC
Confidence 33456666665553
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.49 E-value=0.0088 Score=61.58 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=44.7
Q ss_pred ccCCCceeEEEEeCccccCCCC-cccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEE
Q 009416 135 IFYVESLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI 213 (535)
Q Consensus 135 l~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L 213 (535)
+..+.+|+.|++.++.+..... ...+++|++|++++|.++. +.. +..++.|+.|++.+|.....-.+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccc--ccc-hhhccchhhheeccCcchhccCCccchhhhcc
Confidence 4455777777777777654444 5667777777777776622 111 23445577777776654322233333444444
Q ss_pred EEeec
Q 009416 214 ILVNT 218 (535)
Q Consensus 214 ~l~~c 218 (535)
++.++
T Consensus 168 ~l~~n 172 (414)
T KOG0531|consen 168 DLSYN 172 (414)
T ss_pred cCCcc
Confidence 44443
No 72
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=92.65 E-value=0.18 Score=28.98 Aligned_cols=25 Identities=44% Similarity=0.852 Sum_probs=21.3
Q ss_pred ccceeEeeeEee-ChhHHHHHHhCCC
Q 009416 162 SLRKLALREVCA-DDQAIASLISGCP 186 (535)
Q Consensus 162 ~L~~L~L~~~~~-~~~~l~~~~~~~p 186 (535)
+||+|+|..+.+ ++..+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999998 4557899999997
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.58 E-value=0.027 Score=57.95 Aligned_cols=125 Identities=25% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCceeEEEEeCccccC-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEe
Q 009416 138 VESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (535)
Q Consensus 138 ~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~ 216 (535)
+..++.+.+..+.+.. ......+.+|+.|++.++.+. .+...+..+++|+.|++++|....-..+..++.|+.|.+.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 3444444455554432 133555666666666666552 1222234566666666666654333344445556666666
Q ss_pred ec--CCccEEeecCCcccEEEEeeecccCeEEe-cCcccccceeEeeccCCC
Q 009416 217 NT--SDIKRVEIKTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 217 ~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~ 265 (535)
+| ..+..+. .+++|+.++++++....+... ...+.+++.+.+.++.+.
T Consensus 149 ~N~i~~~~~~~-~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 149 GNLISDISGLE-SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cCcchhccCCc-cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 65 1111111 145566666665552211111 355566666666655543
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.55 E-value=0.14 Score=47.91 Aligned_cols=185 Identities=16% Similarity=0.124 Sum_probs=107.1
Q ss_pred ceeEEEEEEecCCCCCChhhHHHHHHHHHh--cCceEEEEecc--CCCCccCCc-------cccCCCceeEEEEeCcccc
Q 009416 84 SIKKFSLELDLINSPENASLAGRCLGLAIE--SEVKELVLVHW--RSERRNLPE-------IIFYVESLHVLELSYCKLQ 152 (535)
Q Consensus 84 ~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~--~~l~~L~L~~~--~~~~~~lp~-------~l~~~~~L~~L~L~~~~~~ 152 (535)
.+..+.++.. ..+.....|+...++ ++++...++.- +..-..+|. .+..||+|+..+||.|.+.
T Consensus 31 ~~~evdLSGN-----tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 31 ELVEVDLSGN-----TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred ceeEEeccCC-----cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4445555533 456677788877665 46777766541 112223333 3467999999999999884
Q ss_pred C--C----CCcccCcccceeEeeeEeeC---hhHHH---------HHHhCCCcccEEEEeecCCCcee------eeCCCC
Q 009416 153 Q--P----SENVKLFSLRKLALREVCAD---DQAIA---------SLISGCPLIEYLEIRSCEGLESL------DLVNLS 208 (535)
Q Consensus 153 ~--~----~~~~~l~~L~~L~L~~~~~~---~~~l~---------~~~~~~p~Le~L~L~~c~~l~~~------~~~~l~ 208 (535)
. + ..+..-+.|+.|.+++|-++ ++-+. .-++.-|.|+......|...... .+.+-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 3 2 23456788999999998652 22222 22446788888877777543211 111113
Q ss_pred CccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHH---HHHhcCCCCCccEEEee
Q 009416 209 NLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMT 285 (535)
Q Consensus 209 ~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~L~ 285 (535)
.|+.+.+..+. +.+-.+ +. -....+..+++|+.|+|..|.++... +...+...+.|+.|.+.
T Consensus 186 ~lk~vki~qNg-Irpegv-----~~---------L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 186 NLKEVKIQQNG-IRPEGV-----TM---------LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred CceeEEeeecC-cCcchh-----HH---------HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 55555554431 100000 00 01122455788999999888877643 33445556778888888
Q ss_pred cCC
Q 009416 286 KCH 288 (535)
Q Consensus 286 ~c~ 288 (535)
+|-
T Consensus 251 DCl 253 (388)
T COG5238 251 DCL 253 (388)
T ss_pred chh
Confidence 873
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.80 E-value=0.048 Score=48.58 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=44.0
Q ss_pred ccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCC----CCCccEEEEeecCCccEE
Q 009416 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVN----LSNLKEIILVNTSDIKRV 224 (535)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~----l~~L~~L~l~~c~~l~~~ 224 (535)
.++.++-+++.+..+.+.. +.+++.++.|.+.+|..++.+.+.. .++|+.|++++|..+...
T Consensus 102 ~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 4667777777776667776 5789999999999998887663332 367777777777555443
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.13 E-value=0.11 Score=43.40 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=52.4
Q ss_pred ceEEEEeccCCC-CccCCccccCCCceeEEEEeCcccc-CCCC-cccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 116 VKELVLVHWRSE-RRNLPEIIFYVESLHVLELSYCKLQ-QPSE-NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 116 l~~L~L~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~-~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
+..++|+.|... ....+..+.....|+..+|++|.+. .|+. ...+|.++.|++++|.+.+ ++.-++.+|.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcc
Confidence 344555554322 2233334445577888888888874 3333 3467788999998887744 233377888999999
Q ss_pred EeecCCC
Q 009416 193 IRSCEGL 199 (535)
Q Consensus 193 L~~c~~l 199 (535)
++.|+..
T Consensus 107 l~~N~l~ 113 (177)
T KOG4579|consen 107 LRFNPLN 113 (177)
T ss_pred cccCccc
Confidence 8888754
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.07 E-value=0.37 Score=50.92 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.8
Q ss_pred CCCCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (535)
Q Consensus 6 ~~~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l 45 (535)
....|.++.||-|+..+||++|+.++++++++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3557999999999999999999999999999999999864
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=84.05 E-value=1 Score=36.29 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHHcCCChhHHHHHhhhhh
Q 009416 11 GISTLPEPILHHILSFLPFKEVAQTCLLSK 40 (535)
Q Consensus 11 ~is~LPdeiL~~Ils~L~~~d~~r~s~vsk 40 (535)
.+.+||+||+..|+.+-...+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 477899999999999999999988888877
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.48 E-value=0.79 Score=38.14 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=22.7
Q ss_pred CCCceeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEee
Q 009416 137 YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRS 195 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~ 195 (535)
.|++|+.+.+........ ..+..+++|+.+.+...-..-+ ...+..|+.|+.+.+..
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFPN 67 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETS
T ss_pred CCCCCCEEEECCCeeEeChhhcccccccccccccccccccc--eeeeecccccccccccc
Confidence 456677666654211111 3445566666666654311111 12245566666666643
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.27 E-value=1.1 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.810 Sum_probs=12.4
Q ss_pred CCcccEEEEeecCCCce
Q 009416 185 CPLIEYLEIRSCEGLES 201 (535)
Q Consensus 185 ~p~Le~L~L~~c~~l~~ 201 (535)
||+|++|+|++|..+..
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 67788888888876644
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.13 E-value=1.3 Score=24.64 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=11.3
Q ss_pred cccceeEeeeEeeChhHHHH
Q 009416 161 FSLRKLALREVCADDQAIAS 180 (535)
Q Consensus 161 ~~L~~L~L~~~~~~~~~l~~ 180 (535)
++|++|+|++|.+++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 56777777777765555443
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=76.86 E-value=1.8 Score=21.94 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=4.1
Q ss_pred CccEEEeecC
Q 009416 278 LLEYLSMTKC 287 (535)
Q Consensus 278 ~L~~L~L~~c 287 (535)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=76.66 E-value=1.3 Score=24.11 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=8.2
Q ss_pred ceeEEEEeCcccc
Q 009416 140 SLHVLELSYCKLQ 152 (535)
Q Consensus 140 ~L~~L~L~~~~~~ 152 (535)
+|++|+|++|.+.
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4666777776553
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=74.38 E-value=4.6 Score=33.40 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=5.3
Q ss_pred cCCCCCccEEEee
Q 009416 273 ISKLPLLEYLSMT 285 (535)
Q Consensus 273 ~~~~~~L~~L~L~ 285 (535)
+.++++|+.+.+.
T Consensus 54 F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 54 FSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-EEEEET
T ss_pred eeccccccccccc
Confidence 3444455555553
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.98 E-value=4.9 Score=23.42 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=14.4
Q ss_pred cccceeEeeeEeeChhHHHHH
Q 009416 161 FSLRKLALREVCADDQAIASL 181 (535)
Q Consensus 161 ~~L~~L~L~~~~~~~~~l~~~ 181 (535)
++|++|+|++|.++++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 567888888888766555443
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.19 E-value=4.6 Score=41.86 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=39.1
Q ss_pred CCceeEEEEeCccccCC----CCcccCcccceeEeeeE--ee-ChhHHHHHHhCCCcccEEEEeecCCCce
Q 009416 138 VESLHVLELSYCKLQQP----SENVKLFSLRKLALREV--CA-DDQAIASLISGCPLIEYLEIRSCEGLES 201 (535)
Q Consensus 138 ~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~--~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~ 201 (535)
.+.+..++|++|++... .-....|.|+.|+|++| .+ ++..+..+ ....||+|.+.+|+..+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccc
Confidence 46677778888776332 22245688888888887 33 33344432 456688888888876543
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=55.62 E-value=2.1 Score=36.05 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=49.7
Q ss_pred CceEEEEeccCCCCccCCccccC-CCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFY-VESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.+...+|..+. -..+|..+.. .+.++.|+|++|.+ ..|..+..+|.|+.|+++.|.+... +..+..+.+|-.|+
T Consensus 54 el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNG--FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccch--hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHhHHHhc
Confidence 34445555443 3467765543 46899999999988 4556688899999999999987422 22233344455554
Q ss_pred Eeec
Q 009416 193 IRSC 196 (535)
Q Consensus 193 L~~c 196 (535)
...+
T Consensus 130 s~~n 133 (177)
T KOG4579|consen 130 SPEN 133 (177)
T ss_pred CCCC
Confidence 4443
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=52.34 E-value=9 Score=35.86 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=36.3
Q ss_pred CCCCcCCCCCHHHHHHHHcCCC-hhHHHHHhhhhhhh------HHhhccCCceeee
Q 009416 7 LEVDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRW------KQVWQTFPDVEVG 55 (535)
Q Consensus 7 ~~~D~is~LPdeiL~~Ils~L~-~~d~~r~s~vskrW------r~lw~~~~~l~~~ 55 (535)
++.--+.+||.|++..|+.+|+ -+|+..++.+-..- |.+|+.+-.++|.
T Consensus 197 ~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~ 252 (332)
T KOG3926|consen 197 PAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFN 252 (332)
T ss_pred cCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455788999999999999998 68888888763322 3567776666665
No 89
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=47.51 E-value=15 Score=28.95 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.4
Q ss_pred CcCCCCCHHHHHHHHcCCChhHHHH
Q 009416 10 DGISTLPEPILHHILSFLPFKEVAQ 34 (535)
Q Consensus 10 D~is~LPdeiL~~Ils~L~~~d~~r 34 (535)
..+..||.||-..|+++|+-+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999998754
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.82 E-value=15 Score=38.32 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=16.0
Q ss_pred cceeEeeccCCCh------HHHHHhcCCCCCccEEE
Q 009416 254 LKCLKFDFLPIED------EWLCNGISKLPLLEYLS 283 (535)
Q Consensus 254 L~~L~L~~~~~~~------~~l~~l~~~~~~L~~L~ 283 (535)
|++|.+.+|++.. .....+-..||+|..|+
T Consensus 272 Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 272 LEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 5555566555533 22333444677776665
No 91
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=39.56 E-value=18 Score=24.61 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=18.9
Q ss_pred CCcccccccccceeeeeecceee
Q 009416 480 LPVSCWQHCINEVKVEHTKSLSI 502 (535)
Q Consensus 480 ~~~~~~~~~lk~v~i~~~~~~~~ 502 (535)
..++|..++||.|++.||.+...
T Consensus 7 ~~p~Cl~s~Lk~v~~~~f~g~~~ 29 (51)
T PF08387_consen 7 SVPECLLSHLKFVEIKGFRGEEN 29 (51)
T ss_pred CCccchhheeEEEEEEeeeCcHH
Confidence 34789999999999999987443
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=35.18 E-value=17 Score=20.43 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=12.5
Q ss_pred ccccceeEEEEeecccccccccc
Q 009416 368 FQKFSKVLNLQCREGENVIVPQE 390 (535)
Q Consensus 368 l~~L~~~L~L~~~~l~~~~~p~~ 390 (535)
+++|+ .|.++.|.++ .+|+.
T Consensus 1 L~~L~-~L~L~~N~l~--~lp~~ 20 (26)
T smart00370 1 LPNLR-ELDLSNNQLS--SLPPG 20 (26)
T ss_pred CCCCC-EEECCCCcCC--cCCHH
Confidence 35677 7777766666 55553
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=35.18 E-value=17 Score=20.43 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=12.5
Q ss_pred ccccceeEEEEeecccccccccc
Q 009416 368 FQKFSKVLNLQCREGENVIVPQE 390 (535)
Q Consensus 368 l~~L~~~L~L~~~~l~~~~~p~~ 390 (535)
+++|+ .|.++.|.++ .+|+.
T Consensus 1 L~~L~-~L~L~~N~l~--~lp~~ 20 (26)
T smart00369 1 LPNLR-ELDLSNNQLS--SLPPG 20 (26)
T ss_pred CCCCC-EEECCCCcCC--cCCHH
Confidence 35677 7777766666 55553
No 94
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=32.44 E-value=69 Score=29.26 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=22.5
Q ss_pred cCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCC
Q 009416 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL 199 (535)
Q Consensus 159 ~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l 199 (535)
++.+|+.=++++..+.-..+...-.-|.++|--.|..|..-
T Consensus 169 ~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfe 209 (302)
T KOG1665|consen 169 QCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFE 209 (302)
T ss_pred hhhhhcccccccchhhhhhhhhhhheecccccccccCcCCC
Confidence 45666666666655433333333334666666666666543
No 95
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=21.15 E-value=25 Score=34.20 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (535)
Q Consensus 12 is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l 45 (535)
+..+|+++++.|++++..+++++++.|++|-..+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 4579999999999999999999999999999865
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=20.14 E-value=50 Score=18.94 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=6.1
Q ss_pred cccceeEeeeEee
Q 009416 161 FSLRKLALREVCA 173 (535)
Q Consensus 161 ~~L~~L~L~~~~~ 173 (535)
.+|+.|+++.|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3444555544443
Done!