Query 009416
Match_columns 535
No_of_seqs 422 out of 3335
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 04:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 1.4E-27 4.7E-32 256.3 14.8 328 7-347 4-412 (592)
2 2p1m_B Transport inhibitor res 99.9 9.8E-27 3.3E-31 249.8 10.3 324 9-346 3-405 (594)
3 2ast_B S-phase kinase-associat 99.9 2.4E-23 8.1E-28 207.0 7.7 293 8-389 5-311 (336)
4 4fmz_A Internalin; leucine ric 99.8 4.8E-19 1.6E-23 176.7 10.2 269 113-408 43-319 (347)
5 3rgz_A Protein brassinosteroid 99.8 2.5E-19 8.6E-24 197.6 7.0 231 114-348 178-428 (768)
6 2id5_A Lingo-1, leucine rich r 99.8 1.6E-18 5.6E-23 180.6 11.6 228 114-347 32-281 (477)
7 4fmz_A Internalin; leucine ric 99.7 3.7E-18 1.3E-22 170.2 12.0 270 113-409 65-342 (347)
8 3rgz_A Protein brassinosteroid 99.7 5.2E-19 1.8E-23 195.0 5.5 262 115-389 78-361 (768)
9 3v47_A TOLL-like receptor 5B a 99.7 2.2E-18 7.4E-23 178.5 8.7 308 114-453 54-406 (455)
10 2id5_A Lingo-1, leucine rich r 99.7 5.4E-18 1.9E-22 176.7 7.7 255 114-382 56-332 (477)
11 1o6v_A Internalin A; bacterial 99.7 6.9E-17 2.4E-21 167.7 15.5 290 114-453 68-364 (466)
12 1o6v_A Internalin A; bacterial 99.7 1.3E-16 4.3E-21 165.8 16.8 290 113-453 89-386 (466)
13 4fcg_A Uncharacterized protein 99.7 7.1E-17 2.4E-21 159.5 12.7 215 110-346 77-309 (328)
14 4eco_A Uncharacterized protein 99.7 1.9E-17 6.5E-22 178.5 9.2 310 113-453 205-577 (636)
15 3vq2_A TLR4, TOLL-like recepto 99.7 2.4E-17 8.1E-22 177.1 9.6 218 204-457 303-536 (606)
16 4ecn_A Leucine-rich repeat pro 99.7 2.8E-17 9.5E-22 181.0 9.3 309 113-453 447-817 (876)
17 1ziw_A TOLL-like receptor 3; i 99.7 2.3E-17 8E-22 179.7 8.3 379 114-523 222-676 (680)
18 3t6q_A CD180 antigen; protein- 99.7 3.2E-17 1.1E-21 176.1 8.7 81 114-197 105-190 (606)
19 4ecn_A Leucine-rich repeat pro 99.7 2E-17 6.9E-22 182.1 6.5 102 184-288 489-606 (876)
20 3t6q_A CD180 antigen; protein- 99.7 2.4E-17 8.1E-22 177.1 6.5 277 140-452 255-557 (606)
21 4eco_A Uncharacterized protein 99.7 1E-17 3.6E-22 180.5 3.5 302 113-457 248-602 (636)
22 3j0a_A TOLL-like receptor 5; m 99.7 7.9E-17 2.7E-21 179.4 10.4 173 113-288 23-215 (844)
23 3v47_A TOLL-like receptor 5B a 99.7 2.2E-17 7.7E-22 170.9 4.9 307 114-454 30-383 (455)
24 3o6n_A APL1; leucine-rich repe 99.7 3.4E-17 1.2E-21 166.0 6.1 265 114-408 45-326 (390)
25 3vq2_A TLR4, TOLL-like recepto 99.7 4.8E-17 1.6E-21 174.8 7.4 257 135-411 281-556 (606)
26 3ogk_B Coronatine-insensitive 99.7 4.8E-17 1.7E-21 174.2 7.0 282 113-409 72-445 (592)
27 2z7x_B TOLL-like receptor 1, v 99.6 2.1E-16 7.2E-21 166.5 10.1 281 114-410 45-409 (520)
28 2z81_A CD282 antigen, TOLL-lik 99.6 2E-15 6.8E-20 160.1 16.8 192 114-308 26-233 (549)
29 3oja_B Anopheles plasmodium-re 99.6 7.2E-17 2.5E-21 172.8 4.9 79 138-218 74-157 (597)
30 2p1m_B Transport inhibitor res 99.6 3.7E-17 1.3E-21 175.1 2.5 333 83-453 105-517 (594)
31 4fcg_A Uncharacterized protein 99.6 5.6E-16 1.9E-20 153.0 10.2 207 138-372 80-304 (328)
32 3o6n_A APL1; leucine-rich repe 99.6 1.9E-16 6.4E-21 160.5 6.9 274 137-453 43-329 (390)
33 2z63_A TOLL-like receptor 4, v 99.6 1.3E-16 4.6E-21 169.9 5.4 183 207-408 281-478 (570)
34 2z81_A CD282 antigen, TOLL-lik 99.6 5.3E-16 1.8E-20 164.5 9.9 280 115-409 51-419 (549)
35 3j0a_A TOLL-like receptor 5; m 99.6 1.1E-15 3.7E-20 170.3 12.4 155 113-268 47-220 (844)
36 3bz5_A Internalin-J, INLJ; leu 99.6 6.5E-16 2.2E-20 159.5 9.5 213 114-344 42-260 (457)
37 1z7x_W Ribonuclease inhibitor; 99.6 9.3E-17 3.2E-21 166.5 1.3 322 110-453 24-409 (461)
38 2z7x_B TOLL-like receptor 1, v 99.6 6.2E-15 2.1E-19 155.2 14.7 297 113-453 68-455 (520)
39 3oja_B Anopheles plasmodium-re 99.6 4.7E-16 1.6E-20 166.5 5.5 249 137-409 49-310 (597)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.6E-15 5.6E-20 161.2 8.9 143 274-453 350-508 (562)
41 3bz5_A Internalin-J, INLJ; leu 99.6 2.1E-15 7.3E-20 155.7 8.1 267 113-409 63-348 (457)
42 1ziw_A TOLL-like receptor 3; i 99.6 2E-15 7E-20 164.3 8.1 307 115-452 26-363 (680)
43 1ogq_A PGIP-2, polygalacturona 99.6 1.1E-15 3.9E-20 149.8 5.4 239 114-408 50-299 (313)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1E-14 3.5E-19 155.1 10.5 278 114-410 52-438 (562)
45 1z7x_W Ribonuclease inhibitor; 99.5 4.6E-16 1.6E-20 161.2 0.0 314 114-451 56-436 (461)
46 2z80_A TOLL-like receptor 2, v 99.5 1.3E-14 4.4E-19 144.9 10.2 250 114-411 52-312 (353)
47 1xku_A Decorin; proteoglycan, 99.5 1.3E-14 4.5E-19 143.4 9.3 280 115-450 32-327 (330)
48 3g06_A SSPH2 (leucine-rich rep 99.5 4.5E-14 1.5E-18 150.4 13.9 254 114-410 40-294 (622)
49 2z63_A TOLL-like receptor 4, v 99.5 1.6E-14 5.5E-19 153.8 9.2 246 131-411 274-529 (570)
50 1jl5_A Outer protein YOPM; leu 99.5 7.1E-14 2.4E-18 144.1 13.7 235 139-409 131-366 (454)
51 2ft3_A Biglycan; proteoglycan, 99.5 1.6E-14 5.3E-19 143.0 6.3 280 115-451 34-329 (332)
52 2z66_A Variable lymphocyte rec 99.5 1E-14 3.4E-19 142.6 4.5 219 127-349 18-259 (306)
53 3oja_A Leucine-rich immune mol 99.5 4.3E-14 1.5E-18 147.1 7.4 223 140-377 35-269 (487)
54 3o53_A Protein LRIM1, AGAP0063 99.4 4.5E-14 1.5E-18 138.7 5.1 231 114-383 34-276 (317)
55 1ogq_A PGIP-2, polygalacturona 99.4 3.8E-14 1.3E-18 138.9 4.6 194 113-309 75-279 (313)
56 3g06_A SSPH2 (leucine-rich rep 99.4 7E-13 2.4E-17 141.2 14.0 236 114-383 61-297 (622)
57 2ast_B S-phase kinase-associat 99.4 2.8E-14 9.7E-19 141.3 2.0 174 113-287 92-282 (336)
58 3zyi_A Leucine-rich repeat-con 99.4 1.8E-13 6E-18 141.4 7.0 225 128-411 66-301 (452)
59 1xku_A Decorin; proteoglycan, 99.4 9.2E-13 3.1E-17 130.1 11.4 248 115-378 53-327 (330)
60 3zyj_A Leucine-rich repeat-con 99.4 2E-13 6.7E-18 140.6 6.7 226 127-411 54-290 (440)
61 3zyi_A Leucine-rich repeat-con 99.4 1.1E-12 3.9E-17 135.3 11.4 214 114-348 75-300 (452)
62 3o53_A Protein LRIM1, AGAP0063 99.4 1.2E-13 4.2E-18 135.5 3.8 235 159-450 32-270 (317)
63 1jl5_A Outer protein YOPM; leu 99.4 2.2E-12 7.4E-17 133.0 13.1 257 114-409 131-405 (454)
64 2z80_A TOLL-like receptor 2, v 99.4 1.8E-13 6.3E-18 136.5 4.7 89 127-218 42-134 (353)
65 4g8a_A TOLL-like receptor 4; l 99.4 2.7E-13 9.2E-18 146.0 6.2 221 251-503 370-608 (635)
66 2ft3_A Biglycan; proteoglycan, 99.4 4.2E-13 1.4E-17 132.6 6.8 261 114-408 54-328 (332)
67 3zyj_A Leucine-rich repeat-con 99.4 1.2E-12 4.1E-17 134.6 9.9 227 114-363 64-305 (440)
68 1h6u_A Internalin H; cell adhe 99.3 2.1E-12 7.1E-17 126.2 10.4 163 113-286 40-204 (308)
69 3oja_A Leucine-rich immune mol 99.3 9.5E-13 3.2E-17 137.0 7.7 218 114-344 34-268 (487)
70 1h6u_A Internalin H; cell adhe 99.3 2.6E-12 8.8E-17 125.5 10.2 143 136-286 38-182 (308)
71 1ozn_A Reticulon 4 receptor; N 99.3 2.1E-12 7.1E-17 124.7 8.2 201 128-348 23-235 (285)
72 2z66_A Variable lymphocyte rec 99.3 4.5E-13 1.5E-17 130.8 2.5 234 142-410 10-258 (306)
73 1ozn_A Reticulon 4 receptor; N 99.3 2E-12 6.9E-17 124.8 5.3 171 113-288 31-212 (285)
74 1wwl_A Monocyte differentiatio 99.3 3.5E-12 1.2E-16 124.8 5.9 198 116-330 65-285 (312)
75 1wwl_A Monocyte differentiatio 99.2 5.4E-13 1.9E-17 130.6 -0.2 170 138-309 42-239 (312)
76 2xwt_C Thyrotropin receptor; s 99.2 1.4E-11 4.8E-16 115.5 9.4 184 140-328 32-235 (239)
77 2xwt_C Thyrotropin receptor; s 99.2 1.4E-11 4.8E-16 115.6 9.3 191 114-309 31-237 (239)
78 4ezg_A Putative uncharacterize 99.2 1.2E-11 4E-16 112.4 6.4 147 113-287 43-191 (197)
79 2o6q_A Variable lymphocyte rec 99.2 1.9E-11 6.4E-16 117.0 8.1 97 116-218 18-119 (270)
80 2z62_A TOLL-like receptor 4, v 99.2 1.8E-11 6.3E-16 117.4 6.9 201 128-349 19-235 (276)
81 3rfs_A Internalin B, repeat mo 99.2 8.5E-12 2.9E-16 119.5 4.6 169 113-287 40-215 (272)
82 4glp_A Monocyte differentiatio 99.2 1.1E-11 3.7E-16 121.2 5.1 200 104-329 81-304 (310)
83 3rfs_A Internalin B, repeat mo 99.2 2.7E-11 9.2E-16 116.0 7.2 148 135-287 37-191 (272)
84 1h6t_A Internalin B; cell adhe 99.2 3.2E-11 1.1E-15 116.7 7.7 100 113-218 45-144 (291)
85 2ca6_A RAN GTPase-activating p 99.2 1.6E-12 5.5E-17 131.3 -1.6 99 333-453 211-314 (386)
86 2ca6_A RAN GTPase-activating p 99.2 7.1E-12 2.4E-16 126.5 2.4 71 334-411 240-314 (386)
87 2o6q_A Variable lymphocyte rec 99.1 3.5E-11 1.2E-15 115.1 6.3 168 114-286 37-214 (270)
88 4glp_A Monocyte differentiatio 99.1 3.8E-11 1.3E-15 117.3 6.3 217 115-348 65-304 (310)
89 1m9s_A Internalin B; cell inva 99.1 5.3E-11 1.8E-15 126.5 7.5 165 113-288 42-208 (605)
90 4g8a_A TOLL-like receptor 4; l 99.1 1.3E-10 4.5E-15 124.9 10.4 255 139-411 306-578 (635)
91 1h6t_A Internalin B; cell adhe 99.1 9.4E-11 3.2E-15 113.3 7.8 165 136-309 43-211 (291)
92 1p9a_G Platelet glycoprotein I 99.1 2E-10 6.8E-15 111.0 9.2 169 135-307 6-181 (290)
93 4ezg_A Putative uncharacterize 99.1 1E-10 3.5E-15 106.2 6.6 145 136-308 41-191 (197)
94 2z62_A TOLL-like receptor 4, v 99.1 6.5E-11 2.2E-15 113.5 5.6 187 114-306 28-232 (276)
95 1p9a_G Platelet glycoprotein I 99.1 1.2E-10 4E-15 112.6 6.0 166 114-288 10-183 (290)
96 1m9s_A Internalin B; cell inva 99.1 1.1E-10 3.6E-15 124.2 6.2 164 137-309 41-208 (605)
97 3m19_A Variable lymphocyte rec 99.0 1.2E-10 4E-15 110.1 5.6 165 115-286 15-188 (251)
98 4ay9_X Follicle-stimulating ho 99.0 5E-10 1.7E-14 111.3 10.1 211 130-345 23-253 (350)
99 4ay9_X Follicle-stimulating ho 99.0 1.3E-09 4.5E-14 108.2 10.6 213 114-330 30-257 (350)
100 3goz_A Leucine-rich repeat-con 99.0 5.2E-11 1.8E-15 119.0 -0.4 88 131-218 14-119 (362)
101 1xeu_A Internalin C; cellular 98.9 5.4E-10 1.8E-14 106.3 5.6 144 135-287 37-182 (263)
102 3goz_A Leucine-rich repeat-con 98.9 2.8E-10 9.7E-15 113.7 3.4 173 114-288 22-236 (362)
103 2o6s_A Variable lymphocyte rec 98.9 7E-10 2.4E-14 101.4 2.8 88 128-218 19-110 (208)
104 3cvr_A Invasion plasmid antige 98.9 4.2E-09 1.4E-13 110.8 9.1 136 113-265 58-193 (571)
105 3m19_A Variable lymphocyte rec 98.8 1.6E-09 5.5E-14 102.2 4.8 78 139-218 14-93 (251)
106 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2.7E-09 9.4E-14 73.8 4.3 40 8-47 5-44 (53)
107 1xeu_A Internalin C; cellular 98.8 8.6E-10 2.9E-14 104.9 1.8 140 139-287 19-160 (263)
108 2ell_A Acidic leucine-rich nuc 98.8 2.1E-09 7.3E-14 94.6 4.2 104 114-218 24-130 (168)
109 2ell_A Acidic leucine-rich nuc 98.8 1.2E-09 4E-14 96.3 2.4 127 138-288 23-158 (168)
110 2je0_A Acidic leucine-rich nuc 98.7 2E-09 7E-14 92.6 2.0 104 114-218 17-123 (149)
111 3e6j_A Variable lymphocyte rec 98.7 9.4E-09 3.2E-13 95.5 5.2 135 127-287 30-169 (229)
112 2je0_A Acidic leucine-rich nuc 98.7 8.7E-10 3E-14 95.0 -2.2 57 139-198 17-76 (149)
113 2v70_A SLIT-2, SLIT homolog 2 98.7 5.9E-09 2E-13 96.2 2.8 144 117-287 14-163 (220)
114 2v9t_B SLIT homolog 2 protein 98.7 1.4E-08 4.8E-13 93.6 5.1 135 127-287 22-162 (220)
115 2o6s_A Variable lymphocyte rec 98.6 5E-09 1.7E-13 95.7 1.3 102 114-218 28-134 (208)
116 2v70_A SLIT-2, SLIT homolog 2 98.6 1.3E-08 4.5E-13 93.8 3.7 131 114-266 32-167 (220)
117 3cvr_A Invasion plasmid antige 98.6 4.1E-08 1.4E-12 103.2 6.7 158 114-293 80-246 (571)
118 2xot_A Amphoterin-induced prot 98.6 1.4E-08 4.9E-13 101.2 3.0 87 128-218 30-122 (361)
119 1ds9_A Outer arm dynein; leuci 98.6 2.2E-09 7.6E-14 97.3 -2.7 146 115-283 24-180 (198)
120 2v9t_B SLIT homolog 2 protein 98.6 1.9E-08 6.6E-13 92.7 3.3 142 142-309 14-163 (220)
121 3e6j_A Variable lymphocyte rec 98.5 3.5E-08 1.2E-12 91.6 3.9 142 141-309 21-170 (229)
122 1a9n_A U2A', U2A'; complex (nu 98.5 1.8E-08 6E-13 89.4 1.7 59 136-197 16-75 (176)
123 3e4g_A ATP synthase subunit S, 98.5 1.4E-07 4.7E-12 82.4 6.5 94 130-223 52-154 (176)
124 1a9n_A U2A', U2A'; complex (nu 98.4 3.5E-08 1.2E-12 87.5 0.5 130 155-287 13-150 (176)
125 3sb4_A Hypothetical leucine ri 98.4 2.3E-07 7.8E-12 91.1 5.9 36 160-197 100-135 (329)
126 2xot_A Amphoterin-induced prot 98.4 8.8E-08 3E-12 95.4 2.7 102 114-218 39-146 (361)
127 2ra8_A Uncharacterized protein 98.4 1.6E-06 5.3E-11 85.9 10.9 197 68-287 94-317 (362)
128 3un9_A NLR family member X1; l 98.3 2.1E-08 7.1E-13 100.2 -4.9 162 111-288 69-250 (372)
129 3sb4_A Hypothetical leucine ri 98.3 4.4E-07 1.5E-11 89.0 4.6 19 430-448 309-327 (329)
130 1w8a_A SLIT protein; signaling 98.3 2E-07 6.8E-12 83.8 1.8 123 117-265 11-139 (192)
131 1ds9_A Outer arm dynein; leuci 98.2 1.5E-07 5.3E-12 85.0 -0.4 109 156-288 43-151 (198)
132 1dce_A Protein (RAB geranylger 98.2 3.8E-07 1.3E-11 96.2 2.1 99 162-265 442-546 (567)
133 2ra8_A Uncharacterized protein 98.2 1E-06 3.5E-11 87.2 5.0 109 178-287 164-289 (362)
134 1w8a_A SLIT protein; signaling 98.2 1.1E-06 3.9E-11 78.8 4.2 102 114-218 29-136 (192)
135 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5E-11 75.9 4.3 94 161-293 61-155 (176)
136 2wfh_A SLIT homolog 2 protein 98.1 1.5E-06 5.3E-11 78.0 4.5 114 128-265 22-139 (193)
137 4b8c_D Glucose-repressible alc 98.1 9E-08 3.1E-12 104.2 -4.4 114 132-269 217-333 (727)
138 3un9_A NLR family member X1; l 98.1 1.7E-07 5.8E-12 93.5 -2.5 143 114-272 101-259 (372)
139 1dce_A Protein (RAB geranylger 98.1 1.7E-06 5.7E-11 91.3 4.6 98 115-218 442-543 (567)
140 2wfh_A SLIT homolog 2 protein 98.1 2.8E-06 9.5E-11 76.3 5.1 101 114-218 31-136 (193)
141 2o6r_A Variable lymphocyte rec 98.0 2.2E-06 7.5E-11 75.7 2.9 67 128-197 19-87 (177)
142 2o6r_A Variable lymphocyte rec 98.0 4.3E-06 1.5E-10 73.8 4.7 121 142-266 10-138 (177)
143 4fdw_A Leucine rich hypothetic 97.9 1.9E-05 6.6E-10 79.4 8.7 97 185-285 202-308 (401)
144 2e31_A FBS1, F-box only protei 97.9 5.4E-06 1.8E-10 78.3 4.2 38 10-47 49-87 (297)
145 4b8c_D Glucose-repressible alc 97.9 2.1E-06 7.3E-11 93.3 0.8 105 183-291 221-330 (727)
146 3l2o_B F-box only protein 4; s 97.8 4.4E-06 1.5E-10 77.9 1.8 35 11-45 4-38 (312)
147 3g39_A Variable lymphocyte rec 97.8 2E-05 6.9E-10 69.0 4.7 97 116-218 11-112 (170)
148 2r9u_A Variable lymphocyte rec 97.7 2.8E-05 9.5E-10 68.4 4.7 96 117-218 15-115 (174)
149 4fs7_A Uncharacterized protein 97.7 1.9E-05 6.6E-10 79.3 4.0 56 135-194 67-125 (394)
150 3v7d_B Cell division control p 97.6 2.1E-05 7.2E-10 80.5 2.2 41 8-48 11-51 (464)
151 4fdw_A Leucine rich hypothetic 97.5 0.00012 4E-09 73.7 6.0 103 319-452 248-355 (401)
152 2ovr_B FBW7, F-BOX/WD repeat p 97.4 0.0001 3.5E-09 75.0 4.3 39 7-45 14-52 (445)
153 1io0_A Tropomodulin; LRR prote 97.3 3.9E-05 1.3E-09 68.2 0.4 61 137-197 34-104 (185)
154 2r9u_A Variable lymphocyte rec 97.3 0.00012 4.2E-09 64.2 3.5 82 114-198 33-117 (174)
155 1p22_A F-BOX/WD-repeat protein 97.3 6E-05 2E-09 76.6 1.6 38 8-45 7-48 (435)
156 3g39_A Variable lymphocyte rec 97.2 0.00018 6E-09 62.9 3.7 82 114-198 30-114 (170)
157 2ifg_A High affinity nerve gro 97.0 0.00031 1.1E-08 69.0 3.9 69 128-198 21-92 (347)
158 1io0_A Tropomodulin; LRR prote 96.9 0.00016 5.5E-09 64.1 -0.1 99 100-198 20-135 (185)
159 4fs7_A Uncharacterized protein 96.8 0.0011 3.7E-08 66.4 5.5 13 333-345 338-350 (394)
160 2ifg_A High affinity nerve gro 96.3 0.0016 5.4E-08 63.9 3.0 74 143-218 12-90 (347)
161 3rw6_A Nuclear RNA export fact 96.3 0.0013 4.4E-08 61.6 2.2 78 114-191 170-256 (267)
162 4gt6_A Cell surface protein; l 96.3 0.0038 1.3E-07 62.4 5.5 84 332-450 282-365 (394)
163 3rw6_A Nuclear RNA export fact 96.1 0.0012 4.2E-08 61.8 0.9 62 137-200 168-234 (267)
164 4h09_A Hypothetical leucine ri 95.5 0.0067 2.3E-07 60.1 3.5 84 332-450 257-341 (379)
165 4gt6_A Cell surface protein; l 91.5 0.048 1.6E-06 54.3 1.0 119 156-286 260-387 (394)
166 1pgv_A TMD-1, tropomodulin TMD 86.6 0.4 1.4E-05 42.2 3.2 38 250-287 96-136 (197)
167 1pgv_A TMD-1, tropomodulin TMD 84.1 0.17 5.8E-06 44.6 -0.4 97 100-196 25-136 (197)
168 4h09_A Hypothetical leucine ri 83.5 0.88 3E-05 44.6 4.4 13 273-285 282-294 (379)
169 3rfe_A Platelet glycoprotein I 79.6 1.6 5.4E-05 35.5 3.9 42 130-173 24-67 (130)
170 3rfe_A Platelet glycoprotein I 58.5 3.8 0.00013 33.2 1.6 43 386-453 24-66 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-27 Score=256.29 Aligned_cols=328 Identities=14% Similarity=0.126 Sum_probs=163.1
Q ss_pred CCCCcCC----CCCHHHHHHHHcCC-ChhHHHHHhhhhhhhHHhhccCCc-eeeeccccCccchhHHHHHHHHHHhhcCC
Q 009416 7 LEVDGIS----TLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPD-VEVGGMFTNPRKSKEILTSLEPALLNRQR 80 (535)
Q Consensus 7 ~~~D~is----~LPdeiL~~Ils~L-~~~d~~r~s~vskrWr~lw~~~~~-l~~~~~~~~~~~~~~~~~~v~~~L~~~~~ 80 (535)
++.|+++ +||||+|.+||+|| +.+|+++++.|||||++++...+. +.+...+.. ....++ .+
T Consensus 4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~---------~~~~~~-~~-- 71 (592)
T 3ogk_B 4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTA---------TPDRLS-RR-- 71 (592)
T ss_dssp --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGS---------CHHHHH-HH--
T ss_pred hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecccc---------ChHHHH-Hh--
Confidence 4456666 89999999999999 899999999999999988543322 222221111 011111 00
Q ss_pred CCCceeEEEEEEecC---------CCC-------------------------CChhhHHHHHHHHHhcCceEEEEeccCC
Q 009416 81 KMISIKKFSLELDLI---------NSP-------------------------ENASLAGRCLGLAIESEVKELVLVHWRS 126 (535)
Q Consensus 81 ~~~~l~~l~l~~~~~---------~~~-------------------------~~~~~~~~wl~~~~~~~l~~L~L~~~~~ 126 (535)
.+.++.+.+..... .+. ........|+......++++|++..+..
T Consensus 72 -~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 72 -FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp -CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred -CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 12244444432110 000 0111122233222223355555554431
Q ss_pred -CCccCCccccCCCceeEEEEeCccccCC------CCcccCcccceeEeeeEeeC---hhHHHHHHhCCCcccEEEEeec
Q 009416 127 -ERRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSC 196 (535)
Q Consensus 127 -~~~~lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~---~~~l~~~~~~~p~Le~L~L~~c 196 (535)
....++.....|++|++|+|++|.+... .....+++|++|+++++.++ ...+..++..||+|++|++.+|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 1112222223456666666666654221 12234566666666666553 3455555666777777777665
Q ss_pred CCCcee-eeCCCCCccEEEEeecCCc------cEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHH
Q 009416 197 EGLESL-DLVNLSNLKEIILVNTSDI------KRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL 269 (535)
Q Consensus 197 ~~l~~~-~~~~l~~L~~L~l~~c~~l------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l 269 (535)
...+-. .+..+++|+.|.+..+... ......+++|+.|.+.+.....++..+..+++|++|+++++.+++..+
T Consensus 231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 432100 2233456666666543111 001114456666666654433344455667777777777777666666
Q ss_pred HHhcCCCCCccEEEeecCCCCcc---cccCCCCCceEEecc----------Cccccc-----ccccCCceeeEEEcCcch
Q 009416 270 CNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILEC----------CDKLIQ-----VEIETPNLSIFKYHGDLI 331 (535)
Q Consensus 270 ~~l~~~~~~L~~L~L~~c~~l~~---l~~~~~~L~~L~l~~----------c~~L~~-----l~~~~p~L~~L~~~g~~~ 331 (535)
..++..+++|+.|++.++-.-.. +...+++|++|++.+ |..+.. +...+++|++|.+.....
T Consensus 311 ~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 56566777777777764211111 112345677777664 544421 112345666666633322
Q ss_pred -----hhc-ccCcccceeEEEE
Q 009416 332 -----SFS-SNALSLSETSLCF 347 (535)
Q Consensus 332 -----~~~-~~l~~L~~L~l~~ 347 (535)
..+ .++++|+.|++..
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEE
T ss_pred cHHHHHHHHhhCCCCcEEEEee
Confidence 112 2355666666653
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=9.8e-27 Score=249.75 Aligned_cols=324 Identities=17% Similarity=0.217 Sum_probs=170.5
Q ss_pred CCcCCCCCHHHHHHHHcCCC-hhHHHHHhhhhhhhHHhhcc-CCceeeeccccCccchhHHHHHHHHHHhhcCCCCCcee
Q 009416 9 VDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT-FPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIK 86 (535)
Q Consensus 9 ~D~is~LPdeiL~~Ils~L~-~~d~~r~s~vskrWr~lw~~-~~~l~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~ 86 (535)
.|++++||||||.+||+||+ .+|+++++.|||||+++... ...+.+...+.. .. ...+ . ..+.++
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~~-------~~~~-~---~~~~L~ 69 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--SP-------ATVI-R---RFPKVR 69 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--CH-------HHHH-H---HCTTCC
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--CH-------HHHH-h---hCCCce
Confidence 58999999999999999999 99999999999999987221 122333311110 00 0111 1 114566
Q ss_pred EEEEEEecCC------CCCChhhHHHHHHHHH--hcCceEEEEeccCCCCccCCcccc-CCCceeEEEEeCc-cccC--C
Q 009416 87 KFSLELDLIN------SPENASLAGRCLGLAI--ESEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYC-KLQQ--P 154 (535)
Q Consensus 87 ~l~l~~~~~~------~~~~~~~~~~wl~~~~--~~~l~~L~L~~~~~~~~~lp~~l~-~~~~L~~L~L~~~-~~~~--~ 154 (535)
.+.+...... .......+..|+.... .+++++|++..+......+ ..+. .+++|++|+|++| .+.. .
T Consensus 70 ~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l 148 (594)
T 2p1m_B 70 SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGL 148 (594)
T ss_dssp EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHH
T ss_pred EEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHH
Confidence 6666643210 0011133445665443 3577777777654322222 2222 4677777777776 3321 1
Q ss_pred -CCcccCcccceeEeeeEeeCh---hHHHHHHhCCCcccEEEEeecC-CCce--e--eeCCCCCccEEEEeecCCccEEe
Q 009416 155 -SENVKLFSLRKLALREVCADD---QAIASLISGCPLIEYLEIRSCE-GLES--L--DLVNLSNLKEIILVNTSDIKRVE 225 (535)
Q Consensus 155 -~~~~~l~~L~~L~L~~~~~~~---~~l~~~~~~~p~Le~L~L~~c~-~l~~--~--~~~~l~~L~~L~l~~c~~l~~~~ 225 (535)
....++++|++|++++|.+++ ..+..+...+++|++|++++|. .+.. + .+..+++|++|++.+|..+..+.
T Consensus 149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~ 228 (594)
T 2p1m_B 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA 228 (594)
T ss_dssp HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH
Confidence 122356777777777666522 2233334456677777776664 1111 1 01224667777766663222211
Q ss_pred ---ecCCcccEEEEeee-------------------------------cccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416 226 ---IKTSNVNALAIHQT-------------------------------YLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (535)
Q Consensus 226 ---~~~~~L~~L~l~~~-------------------------------~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ 271 (535)
..+++|+.|.+.++ ....++..+..+++|++|+++++.+++..+..
T Consensus 229 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~ 308 (594)
T 2p1m_B 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308 (594)
T ss_dssp HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHH
T ss_pred HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHH
Confidence 13444444443222 11112222335778888888888887777777
Q ss_pred hcCCCCCccEEEeecCCCCc---ccccCCCCCceEEecc--------Ccccc-----cccccCCceeeEEEcCcch----
Q 009416 272 GISKLPLLEYLSMTKCHKLT---SVRISSPCLKTLILEC--------CDKLI-----QVEIETPNLSIFKYHGDLI---- 331 (535)
Q Consensus 272 l~~~~~~L~~L~L~~c~~l~---~l~~~~~~L~~L~l~~--------c~~L~-----~l~~~~p~L~~L~~~g~~~---- 331 (535)
++.++++|++|++.+|..-. .+...+++|+.|++.. |..+. .+...+++|+.|.+.+...
T Consensus 309 ~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred HHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 77788888888888762111 1112457788888743 33331 1122356777775544332
Q ss_pred --hhcccCcccceeEEE
Q 009416 332 --SFSSNALSLSETSLC 346 (535)
Q Consensus 332 --~~~~~l~~L~~L~l~ 346 (535)
....++++|+.|++.
T Consensus 389 ~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHCTTCCEEEEE
T ss_pred HHHHHhhCCCcceeEee
Confidence 112346777777776
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.4e-23 Score=206.98 Aligned_cols=293 Identities=17% Similarity=0.163 Sum_probs=159.8
Q ss_pred CCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhccCCceeeeccccCccchhHHHHHHHHHHhhcCCCCCceeE
Q 009416 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK 87 (535)
Q Consensus 8 ~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~~~~l~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~~ 87 (535)
+...+++||+|++.+||+||+.+|+++++.|||+|+++... |. .++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~--------------------------------~~~~ 51 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES--------------------------------LWQT 51 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST--------------------------------TSSE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch--------------------------------hhee
Confidence 34568999999999999999999999999999999997532 11 0111
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC---CCCcccCcccc
Q 009416 88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ---PSENVKLFSLR 164 (535)
Q Consensus 88 l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~---~~~~~~l~~L~ 164 (535)
+.++ ... .. +..+.....++++.+++..+... ..+..++.+++|++|++++|.+.. +..+..+++|+
T Consensus 52 l~l~--~~~--~~----~~~~~~~~~~~l~~L~l~~n~l~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 52 LDLT--GKN--LH----PDVTGRLLSQGVIAFRCPRSFMD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp EECT--TCB--CC----HHHHHHHHHTTCSEEECTTCEEC--SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred eccc--ccc--CC----HHHHHhhhhccceEEEcCCcccc--ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 1111 000 00 12233333456677766554322 223334556667777777665531 13345566666
Q ss_pred eeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCce--e--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec
Q 009416 165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--L--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY 240 (535)
Q Consensus 165 ~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~--~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~ 240 (535)
+|++++|.+++..... ++.+++|++|++++|..+.. + .+.++++|++|++++|..+..
T Consensus 122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~----------------- 183 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE----------------- 183 (336)
T ss_dssp EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-----------------
T ss_pred EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-----------------
Confidence 6666666655443332 45566666666666643332 1 122334444444444322211
Q ss_pred ccCeEEecCccc-ccceeEeecc--CCChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCccccc
Q 009416 241 LFPIEVNVSSCG-NLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQ 313 (535)
Q Consensus 241 ~~~~~~~~~~l~-~L~~L~L~~~--~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~ 313 (535)
..++..+..++ +|++|+++++ .+++..+...+.++++|+.|++++|..++.... ..++|++|++++|..+..
T Consensus 184 -~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 184 -KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp -HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred -HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 01233355667 7777777776 566555555566778888888877764332111 335666666666543211
Q ss_pred ccccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccc
Q 009416 314 VEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQ 389 (535)
Q Consensus 314 l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~ 389 (535)
-.. ..+.++++|+.|++..+ . +...+..+.. +++ .|.++++.++ +..|+
T Consensus 263 ~~~---------------~~l~~~~~L~~L~l~~~--i--~~~~~~~l~~------~l~-~L~l~~n~l~-~~~~~ 311 (336)
T 2ast_B 263 ETL---------------LELGEIPTLKTLQVFGI--V--PDGTLQLLKE------ALP-HLQINCSHFT-TIARP 311 (336)
T ss_dssp GGG---------------GGGGGCTTCCEEECTTS--S--CTTCHHHHHH------HST-TSEESCCCSC-CTTCS
T ss_pred HHH---------------HHHhcCCCCCEEeccCc--c--CHHHHHHHHh------hCc-ceEEecccCc-cccCC
Confidence 100 13456777777777544 1 1112222222 345 5567777777 55554
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=4.8e-19 Score=176.67 Aligned_cols=269 Identities=14% Similarity=0.135 Sum_probs=169.5
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.++++.|++..+... .+|. +..+++|++|++++|.+...+.+..+++|++|++++|.+..- + .+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~--~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVA--SIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccc--cchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEE
Confidence 467888888765433 4443 667888888888888775554577888888888888877432 2 267888888888
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 270 (535)
+++|.......+..+++|+.|++++|.....+. ..+++|++|++.++...... .+..+++|+.|+++++.+.+...
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~- 194 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP- 194 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECTTSCCCCCGG-
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch-hhccCCCCCEEEccCCccccccc-
Confidence 888864433246677888888888885444333 26778888888877622211 26778888888888777665322
Q ss_pred HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc--cccCCceeeEEEcCcch---hhcccCcccceeE
Q 009416 271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV--EIETPNLSIFKYHGDLI---SFSSNALSLSETS 344 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l--~~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~ 344 (535)
+..+++|+.|++.++......+. ..++|+.|++++|.- ..+ ....++|+.|.++++.. ..+..+++|+.|+
T Consensus 195 --~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 195 --LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLN 271 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred --ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEE
Confidence 55678888888887643322222 446777777776642 111 22446677777766654 3455666777777
Q ss_pred EEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416 345 LCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS 408 (535)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~ 408 (535)
++.+.... + ..+. .+++|+ .|.++.+.+. ...+. .+..+++|++|+++
T Consensus 272 l~~n~l~~-----~-~~~~---~l~~L~-~L~L~~n~l~-~~~~~-----~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 272 VGSNQISD-----I-SVLN---NLSQLN-SLFLNNNQLG-NEDME-----VIGGLTNLTTLFLS 319 (347)
T ss_dssp CCSSCCCC-----C-GGGG---GCTTCS-EEECCSSCCC-GGGHH-----HHHTCTTCSEEECC
T ss_pred ccCCccCC-----C-hhhc---CCCCCC-EEECcCCcCC-CcChh-----HhhccccCCEEEcc
Confidence 65442222 1 1234 567777 6666644444 22233 33455677777765
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.76 E-value=2.5e-19 Score=197.55 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=149.9
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
+++++|++..+.... ..| ...+++|++|+|++|.+.. .+.++++++|++|++++|.+++. ++..+..+++|++|+
T Consensus 178 ~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 178 GELKHLAISGNKISG-DVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLN 253 (768)
T ss_dssp TTCCEEECCSSEEES-CCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEE
T ss_pred CCCCEEECCCCcccc-cCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEE
Confidence 456666655543211 111 2567888888888887743 25578889999999998887543 344578899999999
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecC---CccEEee-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTS---DIKRVEI-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE 267 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~---~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~ 267 (535)
+++|...+.+....+++|++|++++|. .+..... .+++|++|+++++. .+..+..++++++|+.|+++++.+.+.
T Consensus 254 Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp CCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence 999876554444467899999998882 2222212 24899999999887 545566788899999999998888765
Q ss_pred HHHHhcCCCCCccEEEeecCCCCcccccC---C-CCCceEEeccCcccccccc-----cCCceeeEEEcCcch-----hh
Q 009416 268 WLCNGISKLPLLEYLSMTKCHKLTSVRIS---S-PCLKTLILECCDKLIQVEI-----ETPNLSIFKYHGDLI-----SF 333 (535)
Q Consensus 268 ~l~~l~~~~~~L~~L~L~~c~~l~~l~~~---~-~~L~~L~l~~c~~L~~l~~-----~~p~L~~L~~~g~~~-----~~ 333 (535)
.+...+..+++|+.|+++++...+.++.. . .+|+.|+++++.-...+.. ..++|+.|.+.++.. ..
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence 55555678899999999887543334331 1 2677777766542211110 134556665555443 34
Q ss_pred cccCcccceeEEEEe
Q 009416 334 SSNALSLSETSLCFS 348 (535)
Q Consensus 334 ~~~l~~L~~L~l~~~ 348 (535)
+.++++|+.|+++.+
T Consensus 414 l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 414 LSNCSELVSLHLSFN 428 (768)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred HhcCCCCCEEECcCC
Confidence 455556666655443
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=180.60 Aligned_cols=228 Identities=21% Similarity=0.201 Sum_probs=112.0
Q ss_pred cCceEEEEeccCCCCccC-CccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
.+++.|++..+... .+ |..+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.-. ...+..+++|++
T Consensus 32 ~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCE
T ss_pred CCCcEEECCCCccc--eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-cccccCCCCCCE
Confidence 35666666554322 22 2345556666666666665522 244556666666666666553211 112445666666
Q ss_pred EEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---e-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccC
Q 009416 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---I-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (535)
Q Consensus 191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~ 263 (535)
|+|++|...... .+..+++|+.|+++++. +..+. + .+++|+.|++.++. .......+.++++|+.|+++++.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 666666433221 34455666666666551 11111 1 45566666666555 21112235556666666666555
Q ss_pred CChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCccccccc----ccCCceeeEEEcCcch-----
Q 009416 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE----IETPNLSIFKYHGDLI----- 331 (535)
Q Consensus 264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~----~~~p~L~~L~~~g~~~----- 331 (535)
+...... .+..+++|+.|+++++..++.++. ...+|+.|+++++. +..+. ...++|+.|+++++..
T Consensus 188 i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 188 INAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp CCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred CcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccCh
Confidence 5442221 244556666666666555544443 12355555555542 22221 1234555555554433
Q ss_pred hhcccCcccceeEEEE
Q 009416 332 SFSSNALSLSETSLCF 347 (535)
Q Consensus 332 ~~~~~l~~L~~L~l~~ 347 (535)
..+.++++|+.|++..
T Consensus 266 ~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 266 SMLHELLRLQEIQLVG 281 (477)
T ss_dssp TSCTTCTTCCEEECCS
T ss_pred hhccccccCCEEECCC
Confidence 2234455555555543
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=3.7e-18 Score=170.25 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=203.9
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.+++++|++..+... .+|. +..+++|++|++++|.+...+.+..+++|++|++++|.+.... . +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQIT--DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccc--cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEE
Confidence 568999999887543 4555 7789999999999998876677889999999999999884322 2 67899999999
Q ss_pred EeecCCCcee-eeCCCCCccEEEEeecCCccEE-eecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416 193 IRSCEGLESL-DLVNLSNLKEIILVNTSDIKRV-EIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (535)
Q Consensus 193 L~~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 270 (535)
+++|.....+ .+..+++|++|++++|...... ...+++|+.|+++++....... +..+++|+.|+++++.+.+...
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-
Confidence 9999776655 5677899999999998321111 2378999999999987222222 7889999999999988876433
Q ss_pred HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccccc--ccCCceeeEEEcCcch---hhcccCcccceeE
Q 009416 271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHGDLI---SFSSNALSLSETS 344 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~ 344 (535)
+..+++|+.|++++|......+. ..++|+.|+++++. +..+. ...++|+.|.++++.. ..+.++++|+.|+
T Consensus 217 --~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 217 --VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred --hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEE
Confidence 56789999999999754332222 56799999998874 33332 3568999999999876 4577899999999
Q ss_pred EEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416 345 LCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV 409 (535)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~ 409 (535)
++.+.... ..+..+. .+++|+ .|.++.+.+. .+++ +..+++|++|+++.
T Consensus 294 L~~n~l~~----~~~~~l~---~l~~L~-~L~L~~n~l~--~~~~------~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 294 LNNNQLGN----EDMEVIG---GLTNLT-TLFLSQNHIT--DIRP------LASLSKMDSADFAN 342 (347)
T ss_dssp CCSSCCCG----GGHHHHH---TCTTCS-EEECCSSSCC--CCGG------GGGCTTCSEESSSC
T ss_pred CcCCcCCC----cChhHhh---ccccCC-EEEccCCccc--cccC------hhhhhccceeehhh
Confidence 98775444 4466677 899999 8888866666 2222 33577999998863
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=5.2e-19 Score=195.02 Aligned_cols=262 Identities=15% Similarity=0.093 Sum_probs=157.4
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--CCC--CcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~--~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
.++.+++..++ ...+|..++.+++|++|+|++|.+. .+. .++++++|++|++++|.+.......++..+++|++
T Consensus 78 ~L~~l~~~~~~--~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 78 GLESLFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TCCEEECTTSC--EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cccccCCcCCC--cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 44444443332 2345667777788888888887764 233 56778888888888777632222222356778888
Q ss_pred EEEeecCCCcee--e---eCCCCCccEEEEeecCCccEEe-ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccC
Q 009416 191 LEIRSCEGLESL--D---LVNLSNLKEIILVNTSDIKRVE-IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (535)
Q Consensus 191 L~L~~c~~l~~~--~---~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~ 263 (535)
|++++|...+.. . +.++++|++|++++|.-..... ..+++|++|+++++. ....+. ++++++|++|+++++.
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence 888877643322 1 5567788888887772111111 356788888887777 333333 7778888888888877
Q ss_pred CChHHHHHhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccccc----ccCCceeeEEEcCcch-----hh
Q 009416 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE----IETPNLSIFKYHGDLI-----SF 333 (535)
Q Consensus 264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~----~~~p~L~~L~~~g~~~-----~~ 333 (535)
+++..+.. +.++++|+.|++++|...+.++. ..++|++|++.++.-...+. ..+++|+.|+++++.. ..
T Consensus 235 l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 235 LSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CCSCHHHH-TTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CCCcccHH-HhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence 77655544 67778888888887765444433 44677777777664322222 1136777777766643 45
Q ss_pred cccCcccceeEEEEecccchhhHhH-HHHHhhhhcccccceeEEEEeeccccccccc
Q 009416 334 SSNALSLSETSLCFSSHLMVNIEWV-VEYFEILAMFQKFSKVLNLQCREGENVIVPQ 389 (535)
Q Consensus 334 ~~~l~~L~~L~l~~~~~~~~~~~~l-~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~ 389 (535)
++++++|+.|++..+...+ .+ .+.+. .+++|+ .|.++.+.+. +.+|+
T Consensus 314 ~~~l~~L~~L~L~~n~l~~----~ip~~~l~---~l~~L~-~L~Ls~n~l~-~~~p~ 361 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSG----ELPMDTLL---KMRGLK-VLDLSFNEFS-GELPE 361 (768)
T ss_dssp GGGCTTCCEEECCSSEEEE----ECCHHHHT---TCTTCC-EEECCSSEEE-ECCCT
T ss_pred HhcCCCccEEECCCCcccC----cCCHHHHh---cCCCCC-EEeCcCCccC-ccccH
Confidence 6667777777775443221 12 22344 566666 6666644444 34443
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=2.2e-18 Score=178.51 Aligned_cols=308 Identities=14% Similarity=0.101 Sum_probs=190.8
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHH-HHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIA-SLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~-~~~~~~p~Le~ 190 (535)
++++.|++..+.....--|..+..+++|++|+|++|.+. .+..+..+++|++|++++|.+++..+. ..+..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 467777766654322222334556677777777777653 224566677777777777766432222 22556777777
Q ss_pred EEEeecCCCcee--e-eCCCCCccEEEEeecCC--ccEEe---ecCCcccEEEEeeecccCeE---------EecCcccc
Q 009416 191 LEIRSCEGLESL--D-LVNLSNLKEIILVNTSD--IKRVE---IKTSNVNALAIHQTYLFPIE---------VNVSSCGN 253 (535)
Q Consensus 191 L~L~~c~~l~~~--~-~~~l~~L~~L~l~~c~~--l~~~~---~~~~~L~~L~l~~~~~~~~~---------~~~~~l~~ 253 (535)
|++++|...+.. . +..+++|++|++++|.- ..... ...++|+.|++.++...... ..+..+++
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence 777776543221 1 45567777777776621 11000 12256666666665511111 11234578
Q ss_pred cceeEeeccCCChHHHHHhcC--CCCCccEEEeecCCCCccc------------c---cCCCCCceEEeccCccccc---
Q 009416 254 LKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCHKLTSV------------R---ISSPCLKTLILECCDKLIQ--- 313 (535)
Q Consensus 254 L~~L~L~~~~~~~~~l~~l~~--~~~~L~~L~L~~c~~l~~l------------~---~~~~~L~~L~l~~c~~L~~--- 313 (535)
|+.|+++++.+.+.....+.. ..++|+.|++.++...... . ...++|+.|+++++.-...
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 999999999988766554332 3478999999876432211 0 0235789999987753221
Q ss_pred ccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecccccccc
Q 009416 314 VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVP 388 (535)
Q Consensus 314 l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p 388 (535)
.....++|+.|.++++.. ..+.++++|+.|+++.+.... ..+..++ .+++|+ .|.++.+.+. ...|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~---~l~~L~-~L~Ls~N~l~-~~~~ 364 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS----IDSRMFE---NLDKLE-VLDLSYNHIR-ALGD 364 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGGT---TCTTCC-EEECCSSCCC-EECT
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC----cChhHhc---CcccCC-EEECCCCccc-ccCh
Confidence 123457899999988765 367788999999997664333 2344556 799999 8888877776 4445
Q ss_pred ccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416 389 QELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 389 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
. .+..+++|++|+++.+ .+..++...+..+++|+.|.+..++
T Consensus 365 ~-----~~~~l~~L~~L~L~~N------------------~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 365 Q-----SFLGLPNLKELALDTN------------------QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp T-----TTTTCTTCCEEECCSS------------------CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred h-----hccccccccEEECCCC------------------ccccCCHhHhccCCcccEEEccCCC
Confidence 5 6778899999999632 2334455567788999999998554
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=5.4e-18 Score=176.66 Aligned_cols=255 Identities=17% Similarity=0.089 Sum_probs=146.1
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
++|++|++..+.... ..|..+..+++|++|+|++|.+... ..+..+++|++|+|++|.+... ....+..+++|++|
T Consensus 56 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEE
Confidence 567777776653221 2245566677777777777766432 2356677777777777766321 12235667777777
Q ss_pred EEeecCCCcee--eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCC
Q 009416 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
++++|...... .+.++++|+.|++++|. +..+. ..+++|+.|++.++. .......+..+++|+.|+++++..
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 77776542211 45566777777777762 22221 156777777777766 222223466677777777777655
Q ss_pred ChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI----- 331 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~----- 331 (535)
.+..... .....+|+.|+++++. ++.++. ..++|+.|+++++. +..+ ....++|+.|.+.++..
T Consensus 213 ~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 213 LDTMTPN-CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp CCEECTT-TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred ccccCcc-cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECH
Confidence 4433333 2223477777777753 333331 44677777777654 2222 12446777777776654
Q ss_pred hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecc
Q 009416 332 SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREG 382 (535)
Q Consensus 332 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l 382 (535)
..+.++++|+.|+++.+.... ..+..+. .+++|+ .|.++.|.+
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~----~~~~~~~---~l~~L~-~L~l~~N~l 332 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTT----LEESVFH---SVGNLE-TLILDSNPL 332 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSC----CCGGGBS---CGGGCC-EEECCSSCE
T ss_pred HHhcCcccCCEEECCCCcCce----eCHhHcC---CCcccC-EEEccCCCc
Confidence 345666777777775542222 1123334 566677 666654433
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=6.9e-17 Score=167.74 Aligned_cols=290 Identities=16% Similarity=0.122 Sum_probs=157.0
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++.|++..+... .+|. +..+++|++|++++|.+...+.+..+++|++|++++|.+.... . +..+++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLT--DITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccC--Cchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEEC
Confidence 45666666554322 3333 5556666666666666544333566666666666666553211 1 456666666666
Q ss_pred eecCCCceeeeCCCCCccEEEEeec-CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHh
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNT-SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l 272 (535)
++|....--.+..+++|+.|.+.++ ..+.. ...+++|+.|+++++..... ..+..+++|+.|+++++.+.+...
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--- 216 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP--- 216 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCccccccc---
Confidence 6664322113455566666666543 11111 12456677777766652111 235566677777777666654322
Q ss_pred cCCCCCccEEEeecCCCCccccc--CCCCCceEEeccCcccccc-cccCCceeeEEEcCcch---hhcccCcccceeEEE
Q 009416 273 ISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQV-EIETPNLSIFKYHGDLI---SFSSNALSLSETSLC 346 (535)
Q Consensus 273 ~~~~~~L~~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~l-~~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~l~ 346 (535)
+..+++|+.|+++++.. +.++. ..++|+.|+++++.--... ....++|+.|.++++.. ..+.++++|+.|+++
T Consensus 217 ~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 295 (466)
T ss_dssp GGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred ccccCCCCEEECCCCCc-ccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcC
Confidence 34566777777776532 22221 3456777777665421111 12446677777776654 335667777777775
Q ss_pred EecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhccccc
Q 009416 347 FSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSS 426 (535)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 426 (535)
.+.... ++. +. .+++|+ .|.++.+.+. . +++ +..+++|++|+++.+. .
T Consensus 296 ~n~l~~-----~~~-~~---~l~~L~-~L~L~~n~l~-~-~~~------~~~l~~L~~L~l~~n~--------------l 343 (466)
T 1o6v_A 296 ENQLED-----ISP-IS---NLKNLT-YLTLYFNNIS-D-ISP------VSSLTKLQRLFFYNNK--------------V 343 (466)
T ss_dssp SSCCSC-----CGG-GG---GCTTCS-EEECCSSCCS-C-CGG------GGGCTTCCEEECCSSC--------------C
T ss_pred CCcccC-----chh-hc---CCCCCC-EEECcCCcCC-C-chh------hccCccCCEeECCCCc--------------c
Confidence 553222 111 34 677777 7777655554 2 221 2356677777775322 1
Q ss_pred ccchhHHhhhhhccCcccceEEEeecC
Q 009416 427 RFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 427 ~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
.+++ -+..+++|+.|.+..+.
T Consensus 344 -~~~~-----~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 344 -SDVS-----SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp -CCCG-----GGTTCTTCCEEECCSSC
T ss_pred -CCch-----hhccCCCCCEEeCCCCc
Confidence 1111 34566889988888554
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.3e-16 Score=165.75 Aligned_cols=290 Identities=15% Similarity=0.145 Sum_probs=212.3
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.+++++|++..+... .++. +..+++|++|++++|.+...+.+..+++|++|++++|.+..- . .+..+++|++|.
T Consensus 89 l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 89 LTKLVDILMNNNQIA--DITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLS 162 (466)
T ss_dssp CTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEE
T ss_pred cccCCEEECCCCccc--cChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC--h-hhccCCcccEee
Confidence 468999999876543 4555 788999999999999886666688999999999999998542 2 268899999999
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 270 (535)
+.++ ......+..+++|+.|++++|. +..+. ..+++|++|+++++...... .++.+++|+.|+++++.+.+. .
T Consensus 163 l~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 163 FGNQ-VTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp EEES-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--G
T ss_pred cCCc-ccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCcccccc-cccccCCCCEEECCCCCcccc--h
Confidence 9753 2222357788999999999983 22222 26799999999998722211 277899999999999988763 2
Q ss_pred HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc--cccCCceeeEEEcCcch---hhcccCcccceeE
Q 009416 271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV--EIETPNLSIFKYHGDLI---SFSSNALSLSETS 344 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l--~~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~ 344 (535)
.+..+++|+.|+++++......+. .+++|+.|+++++.-- .+ ....++|+.|.++++.. ..+.++++|+.|+
T Consensus 238 -~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 315 (466)
T 1o6v_A 238 -TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 315 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred -hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence 256789999999999764433333 5578999999887432 22 23568999999998876 4578899999999
Q ss_pred EEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhccc
Q 009416 345 LCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRAR 424 (535)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 424 (535)
++.+.... ..+ +. .+++|+ .|.++.+.+. .++ .+..+++|++|+++.+.
T Consensus 316 L~~n~l~~----~~~--~~---~l~~L~-~L~l~~n~l~--~~~------~l~~l~~L~~L~l~~n~------------- 364 (466)
T 1o6v_A 316 LYFNNISD----ISP--VS---SLTKLQ-RLFFYNNKVS--DVS------SLANLTNINWLSAGHNQ------------- 364 (466)
T ss_dssp CCSSCCSC----CGG--GG---GCTTCC-EEECCSSCCC--CCG------GGTTCTTCCEEECCSSC-------------
T ss_pred CcCCcCCC----chh--hc---cCccCC-EeECCCCccC--Cch------hhccCCCCCEEeCCCCc-------------
Confidence 98774433 112 45 799999 8888866665 222 45678899999996332
Q ss_pred ccccchhHHhhhhhccCcccceEEEeecC
Q 009416 425 SSRFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 425 ~~~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
+..+.. +..+|+|+.|.+..+.
T Consensus 365 -----l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 365 -----ISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp -----CCBCGG--GTTCTTCCEEECCCEE
T ss_pred -----cCccch--hhcCCCCCEEeccCCc
Confidence 111222 5667999999998554
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=7.1e-17 Score=159.48 Aligned_cols=215 Identities=19% Similarity=0.207 Sum_probs=131.9
Q ss_pred HHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcc
Q 009416 110 LAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLI 188 (535)
Q Consensus 110 ~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~L 188 (535)
.+...+++.|++..+... .+|..++.+++|++|+|++|.+. .|..++.+++|++|+|++|.+. .++..+..+++|
T Consensus 77 ~~~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L 152 (328)
T 4fcg_A 77 DATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRL 152 (328)
T ss_dssp HHTSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTC
T ss_pred cccccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCC
Confidence 344468999999887644 88999999999999999999885 3466789999999999999885 334457889999
Q ss_pred cEEEEeecCCCceee-----------eCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCccccc
Q 009416 189 EYLEIRSCEGLESLD-----------LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNL 254 (535)
Q Consensus 189 e~L~L~~c~~l~~~~-----------~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 254 (535)
++|++++|...+.+. +.++++|++|++++|. +..++ ..+++|+.|+++++....++..+..+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 999999998765442 1225666666666651 11111 13455555555555422223344555555
Q ss_pred ceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcch
Q 009416 255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI 331 (535)
Q Consensus 255 ~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~ 331 (535)
+.|++++|.+.+..+.. +.++++|+.|++++|...+.++. ..++|+.|++++|..+..++
T Consensus 232 ~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP---------------- 294 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP---------------- 294 (328)
T ss_dssp CEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC----------------
T ss_pred CEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc----------------
Confidence 55555554444332222 34455555555555544444443 22344444444444333222
Q ss_pred hhcccCcccceeEEE
Q 009416 332 SFSSNALSLSETSLC 346 (535)
Q Consensus 332 ~~~~~l~~L~~L~l~ 346 (535)
..++++++|+.+++.
T Consensus 295 ~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 295 SLIAQLPANCIILVP 309 (328)
T ss_dssp GGGGGSCTTCEEECC
T ss_pred HHHhhccCceEEeCC
Confidence 356677777777663
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=1.9e-17 Score=178.46 Aligned_cols=310 Identities=10% Similarity=0.074 Sum_probs=208.7
Q ss_pred hcCceEEEEeccCCCCc----------------cCCcccc--CCCceeEEEEeCccc--cCCCCcccCcccceeEeeeEe
Q 009416 113 ESEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKL--QQPSENVKLFSLRKLALREVC 172 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~~--~~~~~~~~l~~L~~L~L~~~~ 172 (535)
.+++++|++..+...+. .+|..++ .+++|++|+|++|.+ ..|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 46899999998764431 1899999 999999999999987 345778899999999999998
Q ss_pred -eChhHHHHHHhC------CCcccEEEEeecCCCcee----eeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeee
Q 009416 173 -ADDQAIASLISG------CPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQT 239 (535)
Q Consensus 173 -~~~~~l~~~~~~------~p~Le~L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~ 239 (535)
+++..++..+.. +++|++|++++|... .+ .+..+++|+.|++++|.--..++ ..+++|+.|+++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 765234444444 499999999999765 44 36778999999999983221222 26789999999988
Q ss_pred cccCeEEecCcccc-cceeEeeccCCChHHHHHhcCC--CCCccEEEeecCCCCccccc----------CCCCCceEEec
Q 009416 240 YLFPIEVNVSSCGN-LKCLKFDFLPIEDEWLCNGISK--LPLLEYLSMTKCHKLTSVRI----------SSPCLKTLILE 306 (535)
Q Consensus 240 ~~~~~~~~~~~l~~-L~~L~L~~~~~~~~~l~~l~~~--~~~L~~L~L~~c~~l~~l~~----------~~~~L~~L~l~ 306 (535)
....++..+..+++ |+.|++++|.++ .. +..+.. +++|+.|+++++...+.++. ...+|+.|+++
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFAHNKLK-YI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECCSSCCS-SC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred ccccccHhhhhhcccCcEEEccCCcCc-cc-chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 73345556888888 999999999887 22 222333 34899999998765544333 23478888888
Q ss_pred cCcccccccc----cCCceeeEEEcCcch-----hhcc-------cCcccceeEEEEecccchhhHhHHHHH-hhhhccc
Q 009416 307 CCDKLIQVEI----ETPNLSIFKYHGDLI-----SFSS-------NALSLSETSLCFSSHLMVNIEWVVEYF-EILAMFQ 369 (535)
Q Consensus 307 ~c~~L~~l~~----~~p~L~~L~~~g~~~-----~~~~-------~l~~L~~L~l~~~~~~~~~~~~l~~~l-~~~~~l~ 369 (535)
++. +..+.. ..++|+.|.++++.. ..+. ++++|+.|+++.+.... ....+. . .++
T Consensus 442 ~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~~---~l~ 513 (636)
T 4eco_A 442 NNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK----LSDDFRAT---TLP 513 (636)
T ss_dssp SSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB----CCGGGSTT---TCT
T ss_pred CCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc----cChhhhhc---cCC
Confidence 764 223331 357888888888765 1122 23388888886553222 112222 3 578
Q ss_pred ccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEE
Q 009416 370 KFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSI 449 (535)
Q Consensus 370 ~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l 449 (535)
+|+ .|.++.+.+. .+|. .+..+++|++|+++.+. .. ..+.+ ...++. .+..+++|+.|.+
T Consensus 514 ~L~-~L~Ls~N~l~--~ip~-----~~~~l~~L~~L~Ls~N~-----~l---s~N~l---~~~~p~-~l~~l~~L~~L~L 573 (636)
T 4eco_A 514 YLV-GIDLSYNSFS--KFPT-----QPLNSSTLKGFGIRNQR-----DA---QGNRT---LREWPE-GITLCPSLTQLQI 573 (636)
T ss_dssp TCC-EEECCSSCCS--SCCC-----GGGGCSSCCEEECCSCB-----CT---TCCBC---CCCCCT-TGGGCSSCCEEEC
T ss_pred CcC-EEECCCCCCC--CcCh-----hhhcCCCCCEEECCCCc-----cc---ccCcc---cccChH-HHhcCCCCCEEEC
Confidence 888 8888877777 3676 55567888888885211 00 00010 011222 4455688888888
Q ss_pred eecC
Q 009416 450 EHGH 453 (535)
Q Consensus 450 ~~~~ 453 (535)
..+.
T Consensus 574 s~N~ 577 (636)
T 4eco_A 574 GSND 577 (636)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7554
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=2.4e-17 Score=177.14 Aligned_cols=218 Identities=9% Similarity=-0.024 Sum_probs=147.7
Q ss_pred eCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHH-HHHhcCCCCCc
Q 009416 204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEW-LCNGISKLPLL 279 (535)
Q Consensus 204 ~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~~~~L 279 (535)
+..+++|+.|++.+| ..+..+ .+++|+.|++.++. .. ...+..+++|+.|+++++.+++.. ....+..+++|
T Consensus 303 l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred ccccccCCEEEcccccCcccccC--CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 445578888888888 333322 78999999999885 22 336778999999999988876532 12225678999
Q ss_pred cEEEeecCCCCccccc---CCCCCceEEeccCccccc----ccccCCceeeEEEcCcch-----hhcccCcccceeEEEE
Q 009416 280 EYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQ----VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCF 347 (535)
Q Consensus 280 ~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~----l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~ 347 (535)
+.|+++++. +..++. ..++|+.|+++++.-... .....++|+.|.++++.. ..+.++++|+.|+++.
T Consensus 379 ~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 379 RHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred cEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 999999875 333432 457899999988754321 223567899999988765 4577889999998865
Q ss_pred ecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccc
Q 009416 348 SSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSR 427 (535)
Q Consensus 348 ~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 427 (535)
+.... ..++..++ .+++|+ .|.++.+.+. ...|. .+..+++|++|+++.+.
T Consensus 458 n~l~~---~~~~~~~~---~l~~L~-~L~Ls~n~l~-~~~~~-----~~~~l~~L~~L~Ls~N~---------------- 508 (606)
T 3vq2_A 458 NSFKD---NTLSNVFA---NTTNLT-FLDLSKCQLE-QISWG-----VFDTLHRLQLLNMSHNN---------------- 508 (606)
T ss_dssp CEEGG---GEECSCCT---TCTTCC-EEECTTSCCC-EECTT-----TTTTCTTCCEEECCSSC----------------
T ss_pred CcCCC---cchHHhhc---cCCCCC-EEECCCCcCC-ccChh-----hhcccccCCEEECCCCc----------------
Confidence 42221 01344556 788999 8888866666 44455 56778899999986322
Q ss_pred cchhHHhhhhhccCcccceEEEeecCCCcc
Q 009416 428 FSIANVLDGLLWTSPHAEMVSIEHGHLHKF 457 (535)
Q Consensus 428 ~~l~~l~~~ll~~~p~Le~L~l~~~~~~~~ 457 (535)
+..+....+..+++|++|.+..+....+
T Consensus 509 --l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 509 --LLFLDSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp --CSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred --CCCcCHHHccCCCcCCEEECCCCcCccc
Confidence 2222223566678899999886654444
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.8e-17 Score=181.00 Aligned_cols=309 Identities=13% Similarity=0.084 Sum_probs=210.2
Q ss_pred hcCceEEEEeccCCCCc----------------cCCcccc--CCCceeEEEEeCccc--cCCCCcccCcccceeEeeeEe
Q 009416 113 ESEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKL--QQPSENVKLFSLRKLALREVC 172 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~~--~~~~~~~~l~~L~~L~L~~~~ 172 (535)
.++|+.|+|..+...+. .+|..++ .+++|++|+|++|.+ ..|..++++++|++|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 36899999998765541 2899888 999999999999986 344678899999999999997
Q ss_pred -eChhHHHHHH-------hCCCcccEEEEeecCCCcee----eeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEee
Q 009416 173 -ADDQAIASLI-------SGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQ 238 (535)
Q Consensus 173 -~~~~~l~~~~-------~~~p~Le~L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~ 238 (535)
++...++..+ ..+|+|++|++++|... .+ .+..+++|+.|++++|.- ..++ ..+++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC-CBCCCCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc-ccchhhcCCCcceEEECcC
Confidence 6652333323 35669999999999765 44 367789999999999832 2332 2678999999999
Q ss_pred ecccCeEEecCcccc-cceeEeeccCCChHHHHHhcCCC--CCccEEEeecCCCCccccc--------CCCCCceEEecc
Q 009416 239 TYLFPIEVNVSSCGN-LKCLKFDFLPIEDEWLCNGISKL--PLLEYLSMTKCHKLTSVRI--------SSPCLKTLILEC 307 (535)
Q Consensus 239 ~~~~~~~~~~~~l~~-L~~L~L~~~~~~~~~l~~l~~~~--~~L~~L~L~~c~~l~~l~~--------~~~~L~~L~l~~ 307 (535)
+....++..+..+++ |+.|++++|.+.. ++..+... ++|+.|+++++...+.++. ...+|+.|++++
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred CccccchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 984456667888998 9999999998872 23334444 3499999998765443321 234788888887
Q ss_pred Cccccccc----ccCCceeeEEEcCcch-----hh-------cccCcccceeEEEEecccchhhHhHHHHH-hhhhcccc
Q 009416 308 CDKLIQVE----IETPNLSIFKYHGDLI-----SF-------SSNALSLSETSLCFSSHLMVNIEWVVEYF-EILAMFQK 370 (535)
Q Consensus 308 c~~L~~l~----~~~p~L~~L~~~g~~~-----~~-------~~~l~~L~~L~l~~~~~~~~~~~~l~~~l-~~~~~l~~ 370 (535)
+.- ..+. ...++|+.|.++++.. .. ..++++|+.|+++.+.... ....+. . .+++
T Consensus 683 N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~----lp~~l~~~---~l~~ 754 (876)
T 4ecn_A 683 NEI-QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS----LSDDFRAT---TLPY 754 (876)
T ss_dssp SCC-CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC----CCGGGSTT---TCTT
T ss_pred CcC-CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc----chHHhhhc---cCCC
Confidence 643 2333 2457889998888764 11 1234488998886653222 111222 3 5788
Q ss_pred cceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416 371 FSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE 450 (535)
Q Consensus 371 L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~ 450 (535)
|+ .|.|+.+.+. .+|. .+..+++|+.|+|+.++ + +..+ .+.......+..+|+|+.|.+.
T Consensus 755 L~-~L~Ls~N~L~--~lp~-----~l~~L~~L~~L~Ls~N~---~-----ls~N----~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 755 LS-NMDVSYNCFS--SFPT-----QPLNSSQLKAFGIRHQR---D-----AEGN----RILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CC-EEECCSSCCS--SCCC-----GGGGCTTCCEEECCCCB---C-----TTCC----BCCCCCCTTGGGCSSCCEEECC
T ss_pred cC-EEEeCCCCCC--ccch-----hhhcCCCCCEEECCCCC---C-----cccc----cccccChHHHhcCCCCCEEECC
Confidence 89 8888877777 3676 55577889998886322 0 0001 1111111245567889988888
Q ss_pred ecC
Q 009416 451 HGH 453 (535)
Q Consensus 451 ~~~ 453 (535)
.+.
T Consensus 815 ~N~ 817 (876)
T 4ecn_A 815 SND 817 (876)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=2.3e-17 Score=179.65 Aligned_cols=379 Identities=15% Similarity=0.137 Sum_probs=180.2
Q ss_pred cCceEEEEeccCCCCccCCccccCC--CceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYV--ESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le 189 (535)
.+++.|++..+.... ..|.++..+ ++|++|+|++|.+.. +..++.+++|++|++++|.+.... +..+.++++|+
T Consensus 222 ~~L~~L~L~~n~l~~-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 299 (680)
T 1ziw_A 222 TSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVR 299 (680)
T ss_dssp SCCCEEECTTSCCCE-ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCTTCC
T ss_pred ccccEEEccCCcccc-cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCCCcc
Confidence 466666666543221 223334444 236666666665521 134455666666666666543211 11234455555
Q ss_pred EEEEe---------------------------------ecCCCcee--eeCCCCCccEEEEeecC-CccEEee------c
Q 009416 190 YLEIR---------------------------------SCEGLESL--DLVNLSNLKEIILVNTS-DIKRVEI------K 227 (535)
Q Consensus 190 ~L~L~---------------------------------~c~~l~~~--~~~~l~~L~~L~l~~c~-~l~~~~~------~ 227 (535)
.|+++ +|...+.. .+.++++|++|++++|. ....+.. .
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 55554 44321111 23334455555554441 1111111 1
Q ss_pred CCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceE
Q 009416 228 TSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTL 303 (535)
Q Consensus 228 ~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L 303 (535)
.++|+.|+++++. ....+..+..+++|+.|++++|.+.+......+.++++|+.|+++++......+. ..++|+.|
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 2456666665554 2212234566777777777777765543333356677777777777642211111 34677777
Q ss_pred EeccCcc--cccc---cccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhH----HHHHhhhhccc
Q 009416 304 ILECCDK--LIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWV----VEYFEILAMFQ 369 (535)
Q Consensus 304 ~l~~c~~--L~~l---~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~~l~~~~~l~ 369 (535)
++.++.- +..+ ....++|+.|.++++.. ..+.++++|+.|+++.+.........+ ...+. +++
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~---~l~ 536 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK---GLS 536 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT---TCT
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc---CCC
Confidence 7766542 1111 12456788888877654 346778888888886553222000001 11245 688
Q ss_pred ccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEE
Q 009416 370 KFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSI 449 (535)
Q Consensus 370 ~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l 449 (535)
+|+ .|.++.+.++ .+|+. .+..+++|++|+++. ..+..++...|..+++|+.|.+
T Consensus 537 ~L~-~L~L~~N~l~--~i~~~----~~~~l~~L~~L~Ls~------------------N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 537 HLH-ILNLESNGFD--EIPVE----VFKDLFELKIIDLGL------------------NNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp TCC-EEECCSSCCC--CCCTT----TTTTCTTCCEEECCS------------------SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCC-EEECCCCCCC--CCCHH----HcccccCcceeECCC------------------CCCCcCCHhHhCCCCCCCEEEC
Confidence 888 7777766666 45542 356778888888852 2334455567778899999999
Q ss_pred eecCCCcceeeehh---h--hhhhhcCCCCcc-ccC-CCcccccccccceeeeee-cceeecc----CCcccccceeeee
Q 009416 450 EHGHLHKFSFQISY---K--KQLIYDGEIPRC-CQS-LPVSCWQHCINEVKVEHT-KSLSITE----DGELQHDVRSYYC 517 (535)
Q Consensus 450 ~~~~~~~~~~~~~~---~--~~l~~~~~~~~~-~~~-~~~~~~~~~lk~v~i~~~-~~~~~~~----~~~~~~~~~~~~~ 517 (535)
..+.....+..... . +.+...+....| |.. .+...|.. -..+.+.++ ..+.|.. .|....+++...|
T Consensus 592 ~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~-~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~ 670 (680)
T 1ziw_A 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN-ETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC 670 (680)
T ss_dssp TTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS-CC--------------------------------
T ss_pred CCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH-hcCcccccccCCcEECCchHHCCCcccccChhhc
Confidence 86543333211110 0 112334455566 775 55555642 233444443 3455532 2344445555555
Q ss_pred ecccch
Q 009416 518 FEGGED 523 (535)
Q Consensus 518 ~~~~~~ 523 (535)
....+.
T Consensus 671 ~~~~~~ 676 (680)
T 1ziw_A 671 KDSAHH 676 (680)
T ss_dssp ------
T ss_pred CCCccC
Confidence 554443
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=3.2e-17 Score=176.11 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=42.5
Q ss_pred cCceEEEEeccCCCCccC-CccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCccc-
Q 009416 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE- 189 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le- 189 (535)
+++++|++..+... .+ |..+..+++|++|++++|.+... +....+++|++|++++|.+.... ...++.+++|+
T Consensus 105 ~~L~~L~L~~n~i~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 181 (606)
T 3t6q_A 105 KALKHLFFIQTGIS--SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATN 181 (606)
T ss_dssp TTCCEEECTTSCCS--CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCCS
T ss_pred ccccEeeccccCcc--cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC-hhhhhhhcccce
Confidence 35556655554322 22 23345566666666666665331 34444667777777666553221 22245566666
Q ss_pred -EEEEeecC
Q 009416 190 -YLEIRSCE 197 (535)
Q Consensus 190 -~L~L~~c~ 197 (535)
.|++++|.
T Consensus 182 l~L~l~~n~ 190 (606)
T 3t6q_A 182 LSLNLNGND 190 (606)
T ss_dssp EEEECTTCC
T ss_pred eEEecCCCc
Confidence 55555553
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2e-17 Score=182.11 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCcccEEEEeecCCCcee--eeCCCCCccEEEEeecCCccE--Ee----------ecCCcccEEEEeeecccCeEE--e
Q 009416 184 GCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKR--VE----------IKTSNVNALAIHQTYLFPIEV--N 247 (535)
Q Consensus 184 ~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~--~~----------~~~~~L~~L~l~~~~~~~~~~--~ 247 (535)
.+++|++|+|++|...+.+ .+.++++|+.|++++|..+.. ++ ..+++|+.|+++++....++. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 4555555555555443333 244455555555555531211 11 022355555555555223344 4
Q ss_pred cCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 248 ~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
++++++|+.|++++|.+. . ++ .+..+++|+.|+++++.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~-lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-H-LE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-B-CC-CCCTTSEESEEECCSSC
T ss_pred hhcCCCCCEEECCCCCcc-c-ch-hhcCCCcceEEECcCCc
Confidence 555555555555555544 1 11 24455555555555543
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=2.4e-17 Score=177.15 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=154.7
Q ss_pred ceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCce--eeeCCCCCccEEEE
Q 009416 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIIL 215 (535)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~--~~~~~l~~L~~L~l 215 (535)
+|++|++++|.+... ..+..+++|++|+++++.++ .++..+..+++|++|++++|...+. ..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 566666666655322 22455666666666666553 1222245556666666666543221 13444566666666
Q ss_pred eecCCccEEe----ecCCcccEEEEeeecccCe---EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416 216 VNTSDIKRVE----IKTSNVNALAIHQTYLFPI---EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 216 ~~c~~l~~~~----~~~~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
++|.....+. ..+++|+.|+++++..... +..+..+++|+.|+++++.+.+..... +..+++|+.|+++++.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCc
Confidence 6652221111 1456666666666551111 223556667777777666654432222 4556677777776654
Q ss_pred CCccccc----CCCCCceEEeccCcccc---cccccCCceeeEEEcCcch--------hhcccCcccceeEEEEecccch
Q 009416 289 KLTSVRI----SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI--------SFSSNALSLSETSLCFSSHLMV 353 (535)
Q Consensus 289 ~l~~l~~----~~~~L~~L~l~~c~~L~---~l~~~~p~L~~L~~~g~~~--------~~~~~l~~L~~L~l~~~~~~~~ 353 (535)
.....+. ..++|+.|+++++.--. ......++|+.|.++++.. ..+.++++|+.|+++.+....
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~- 490 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS- 490 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-
Confidence 3222211 33566677766654221 1112356777777766643 246778899999887664333
Q ss_pred hhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHH
Q 009416 354 NIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANV 433 (535)
Q Consensus 354 ~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 433 (535)
..+..+. .+++|+ .|.++.+.+. ...|+ .+..+++| +|+++.+. +..+
T Consensus 491 ---~~~~~~~---~l~~L~-~L~Ls~N~l~-~~~~~-----~l~~l~~L-~L~L~~N~------------------l~~~ 538 (606)
T 3t6q_A 491 ---IDQHAFT---SLKMMN-HVDLSHNRLT-SSSIE-----ALSHLKGI-YLNLASNH------------------ISII 538 (606)
T ss_dssp ---ECTTTTT---TCTTCC-EEECCSSCCC-GGGGG-----GGTTCCSC-EEECCSSC------------------CCCC
T ss_pred ---cChhhhc---cccCCC-EEECCCCccC-cCChh-----HhCccccc-EEECcCCc------------------cccc
Confidence 2244456 789999 8888877776 45555 56677778 77775221 2223
Q ss_pred hhhhhccCcccceEEEeec
Q 009416 434 LDGLLWTSPHAEMVSIEHG 452 (535)
Q Consensus 434 ~~~ll~~~p~Le~L~l~~~ 452 (535)
+...+..+++|+.|.+..+
T Consensus 539 ~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CGGGHHHHHTSSEEECTTC
T ss_pred CHhhcccCCCCCEEeCCCC
Confidence 3335666789999999844
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=1e-17 Score=180.51 Aligned_cols=302 Identities=10% Similarity=0.054 Sum_probs=216.8
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCcc-ccC---CCCcccC------cccceeEeeeEeeChhHHHH--
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCK-LQQ---PSENVKL------FSLRKLALREVCADDQAIAS-- 180 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-~~~---~~~~~~l------~~L~~L~L~~~~~~~~~l~~-- 180 (535)
.++++.|++..+... ..+|..++.+++|++|++++|. +.. |..++.+ ++|++|++++|.++ .++.
T Consensus 248 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHH
T ss_pred cCCCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchh
Confidence 468999999987643 3789999999999999999998 642 3445554 99999999999886 3333
Q ss_pred HHhCCCcccEEEEeecCCCcee-eeCCCCCccEEEEeecCCccEEe---ecCCc-ccEEEEeeecccCeEEecCccc--c
Q 009416 181 LISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEIILVNTSDIKRVE---IKTSN-VNALAIHQTYLFPIEVNVSSCG--N 253 (535)
Q Consensus 181 ~~~~~p~Le~L~L~~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~~---~~~~~-L~~L~l~~~~~~~~~~~~~~l~--~ 253 (535)
.++.+++|++|++++|...+.+ .+..+++|+.|++++|. +..++ ..+++ |+.|+++++....++..+...+ +
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 5789999999999999765444 45556899999999882 22222 25677 9999999998335555555544 8
Q ss_pred cceeEeeccCCChHHHHHhcC-------CCCCccEEEeecCCCCccccc----CCCCCceEEeccCccccccccc----C
Q 009416 254 LKCLKFDFLPIEDEWLCNGIS-------KLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEIE----T 318 (535)
Q Consensus 254 L~~L~L~~~~~~~~~l~~l~~-------~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~~----~ 318 (535)
|+.|++++|.+.+..+.. +. .+++|+.|+++++.. +.++. ..++|+.|+++++.- ..+... .
T Consensus 404 L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~ 480 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDE 480 (636)
T ss_dssp EEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEET
T ss_pred cCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccc
Confidence 999999999988755444 33 667999999999653 35554 367899999987643 233321 1
Q ss_pred -------CceeeEEEcCcch----hhcc--cCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEE------e
Q 009416 319 -------PNLSIFKYHGDLI----SFSS--NALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ------C 379 (535)
Q Consensus 319 -------p~L~~L~~~g~~~----~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~------~ 379 (535)
++|+.|.++++.. ..+. ++++|+.|+++.+.... ++..+. .+++|+ .|.++ .
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~---~l~~L~-~L~Ls~N~~ls~ 551 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPL---NSSTLK-GFGIRNQRDAQG 551 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGG---GCSSCC-EEECCSCBCTTC
T ss_pred cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-----cChhhh---cCCCCC-EEECCCCccccc
Confidence 2899999988766 3343 88999999997653322 344456 799999 88885 2
Q ss_pred eccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecCCCcc
Q 009416 380 REGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKF 457 (535)
Q Consensus 380 ~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~~~~~ 457 (535)
+.+. ..+|+ .+..+++|++|+|+.+. +..++..+. ++|+.|.+..++...+
T Consensus 552 N~l~-~~~p~-----~l~~l~~L~~L~Ls~N~------------------l~~ip~~~~---~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 552 NRTL-REWPE-----GITLCPSLTQLQIGSND------------------IRKVNEKIT---PNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCC-CCCCT-----TGGGCSSCCEEECCSSC------------------CCBCCSCCC---TTCCEEECCSCTTCEE
T ss_pred Cccc-ccChH-----HHhcCCCCCEEECCCCc------------------CCccCHhHh---CcCCEEECcCCCCccc
Confidence 3444 56676 66778999999997322 223333322 7999999997664444
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=7.9e-17 Score=179.44 Aligned_cols=173 Identities=15% Similarity=0.080 Sum_probs=120.9
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--C-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--Q-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le 189 (535)
.++++.|+++.+.... -.|..+..+++|++|+|++|... . +..+.++++|++|+|++|.+.... +..+.++++|+
T Consensus 23 p~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHLF 100 (844)
T ss_dssp CTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSSCC
T ss_pred CCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcccC
Confidence 4689999998865432 23566778899999999998442 2 356788999999999998874321 23467899999
Q ss_pred EEEEeecCCCcee----eeCCCCCccEEEEeecCC--ccE--EeecCCcccEEEEeeec-ccCeEEecCcc--cccceeE
Q 009416 190 YLEIRSCEGLESL----DLVNLSNLKEIILVNTSD--IKR--VEIKTSNVNALAIHQTY-LFPIEVNVSSC--GNLKCLK 258 (535)
Q Consensus 190 ~L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~~--l~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~l--~~L~~L~ 258 (535)
+|+|++|...+.. .+..+++|++|++++|.- +.. ....+++|+.|+++++. ....+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 9999998754422 367789999999998832 211 11268899999998887 33334455555 7899999
Q ss_pred eeccCCChHHHHHhcCCCC------CccEEEeecCC
Q 009416 259 FDFLPIEDEWLCNGISKLP------LLEYLSMTKCH 288 (535)
Q Consensus 259 L~~~~~~~~~l~~l~~~~~------~L~~L~L~~c~ 288 (535)
++.+.+.+..... +..++ .|+.|+++++.
T Consensus 181 L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 181 LAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp ECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCC
T ss_pred CCCCccccccccc-hhhcCCccccCceeEEecCCCc
Confidence 9988776643322 23333 38999998763
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.66 E-value=2.2e-17 Score=170.88 Aligned_cols=307 Identities=15% Similarity=0.095 Sum_probs=201.4
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--C-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--Q-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
+++++|+++.+.... ..|..+..+++|++|+|++|.+. . +..+..+++|++|+|++|.+.... +..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-TTTTTTCTTCCE
T ss_pred CccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-hhhccCcccCCE
Confidence 578888888765432 23566778888999999888763 2 245678889999999888764321 223677888999
Q ss_pred EEEeecCCCcee----eeCCCCCccEEEEeecC--CccEE--eecCCcccEEEEeeec-ccCeEEecCcc--cccceeEe
Q 009416 191 LEIRSCEGLESL----DLVNLSNLKEIILVNTS--DIKRV--EIKTSNVNALAIHQTY-LFPIEVNVSSC--GNLKCLKF 259 (535)
Q Consensus 191 L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~--~l~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~l--~~L~~L~L 259 (535)
|++++|...+.. .+..+++|++|++++|. .+... ...+++|+.|+++++. ....+..+..+ ++|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999888754322 26667888999888882 22221 2267888888888877 33223334444 57788888
Q ss_pred eccCCChHHH-------HHhcCCCCCccEEEeecCCCCccccc------CCCCCceEEeccCccccc------------c
Q 009416 260 DFLPIEDEWL-------CNGISKLPLLEYLSMTKCHKLTSVRI------SSPCLKTLILECCDKLIQ------------V 314 (535)
Q Consensus 260 ~~~~~~~~~l-------~~l~~~~~~L~~L~L~~c~~l~~l~~------~~~~L~~L~l~~c~~L~~------------l 314 (535)
+++.+.+... ...+..+++|+.|+++++...+..+. ...+|+.|++.++..... .
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 8776654211 11133567899999998765443332 236788888887643210 0
Q ss_pred ---cccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecccccc
Q 009416 315 ---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVI 386 (535)
Q Consensus 315 ---~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~ 386 (535)
....++|+.++++++.. ..+.++++|+.|+++.+.... ..+..+. ++++|+ .|.++.+.+. ..
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~---~l~~L~-~L~Ls~N~l~-~~ 338 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----IDDNAFW---GLTHLL-KLNLSQNFLG-SI 338 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTT---TCTTCC-EEECCSSCCC-EE
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc----cChhHhc---CcccCC-EEECCCCccC-Cc
Confidence 01236899999988765 457788999999996553333 2244456 789999 8888866665 33
Q ss_pred ccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecCC
Q 009416 387 VPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHL 454 (535)
Q Consensus 387 ~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~~ 454 (535)
.|. .+..+++|++|+++.+. +..+....+..+|+|+.|.+..+..
T Consensus 339 ~~~-----~~~~l~~L~~L~Ls~N~------------------l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 339 DSR-----MFENLDKLEVLDLSYNH------------------IRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp CGG-----GGTTCTTCCEEECCSSC------------------CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred Chh-----HhcCcccCCEEECCCCc------------------ccccChhhccccccccEEECCCCcc
Confidence 344 56678899999996322 2223233566779999999986553
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=3.4e-17 Score=166.04 Aligned_cols=265 Identities=15% Similarity=0.143 Sum_probs=125.4
Q ss_pred cCceEEEEeccCCCCccCCccc-cCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLPEII-FYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
.+++.+++..+. ...+|..+ ..+++|++|+|++|.+... ..+..+++|++|++++|.++... +..++.+++|++
T Consensus 45 ~~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred CCceEEEecCCc--hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-HHHhcCCCCCCE
Confidence 456666665543 22455442 3456666666666655221 34556666666666666553211 122455666666
Q ss_pred EEEeecCCCcee---eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeecccCeEEecCcccccceeEeeccC
Q 009416 191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (535)
Q Consensus 191 L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~ 263 (535)
|++++|... .+ .+..+++|++|++++|. +..+. ..+++|+.|+++++.... ..+..+++|+.|+++++.
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--VDLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB--CCGGGCTTCSEEECCSSC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc--cccccccccceeeccccc
Confidence 666666432 22 13445666666666551 11111 134556666665554111 124455566666665555
Q ss_pred CChHHHHHhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccc-cccccCCceeeEEEcCcch-----hhccc
Q 009416 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI-----SFSSN 336 (535)
Q Consensus 264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~-~l~~~~p~L~~L~~~g~~~-----~~~~~ 336 (535)
+.. +...++|+.|+++++.. ..++. ..++|+.|++.++.--. ......++|+.|.++++.. ..+.+
T Consensus 198 l~~------~~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 198 LST------LAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp CSE------EECCSSCSEEECCSSCC-CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc------cCCCCcceEEECCCCee-eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 443 22334566666655432 22222 23455555555442110 0112334555555555443 23445
Q ss_pred CcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416 337 ALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS 408 (535)
Q Consensus 337 l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~ 408 (535)
+++|+.|+++.+.... ++.... .+++|+ .|.++.+.+. .+|+ .+..+++|++|+++
T Consensus 271 l~~L~~L~L~~n~l~~-----~~~~~~---~l~~L~-~L~L~~n~l~--~~~~-----~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-----LNLYGQ---PIPTLK-VLDLSHNHLL--HVER-----NQPQFDRLENLYLD 326 (390)
T ss_dssp CSSCCEEECCSSCCCE-----EECSSS---CCTTCC-EEECCSSCCC--CCGG-----GHHHHTTCSEEECC
T ss_pred cccCCEEECCCCcCcc-----cCcccC---CCCCCC-EEECCCCcce--ecCc-----cccccCcCCEEECC
Confidence 5556665554332111 111113 455566 5555544443 3343 23344556666554
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=4.8e-17 Score=174.77 Aligned_cols=257 Identities=14% Similarity=0.142 Sum_probs=197.3
Q ss_pred ccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEE
Q 009416 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (535)
Q Consensus 135 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~ 214 (535)
+..+++|+.|+++++.+...+.+..+++|++|++++|.++ .++. + .+++|++|++++|.......+..+++|++|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--cccc-C-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 5667999999999998865567888999999999999883 2333 3 8999999999999887777788899999999
Q ss_pred EeecCCccEE---e---ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416 215 LVNTSDIKRV---E---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 215 l~~c~~l~~~---~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
+++|. +... . ..+++|+.|+++++.....+..+.++++|+.|+++++.+.+......+.++++|+.|++++|.
T Consensus 357 ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 99883 2222 1 268999999999988333456788999999999999887766543447789999999999987
Q ss_pred CCccccc---CCCCCceEEeccCccccc-c---cccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhH
Q 009416 289 KLTSVRI---SSPCLKTLILECCDKLIQ-V---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIE 356 (535)
Q Consensus 289 ~l~~l~~---~~~~L~~L~l~~c~~L~~-l---~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~ 356 (535)
..+..+. ..++|+.|+++++.-... + ....++|+.|.++++.. ..+.++++|+.|+++.+....
T Consensus 436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---- 511 (606)
T 3vq2_A 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF---- 511 (606)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC----
T ss_pred CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC----
Confidence 5554443 457899999998854321 2 23568999999998865 457889999999997764443
Q ss_pred hHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcc-cceeeEEEEee
Q 009416 357 WVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLT-SVKKLNYSVRT 411 (535)
Q Consensus 357 ~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~-~L~~L~l~~~~ 411 (535)
..+..+. ++++|+ .|.++.+.++ .+|+ .+..++ +|++|++...+
T Consensus 512 ~~~~~~~---~l~~L~-~L~l~~N~l~--~~p~-----~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 512 LDSSHYN---QLYSLS-TLDCSFNRIE--TSKG-----ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEGGGTT---TCTTCC-EEECTTSCCC--CEES-----CGGGSCTTCCEEECCSCC
T ss_pred cCHHHcc---CCCcCC-EEECCCCcCc--ccCH-----hHhhhcccCcEEEccCCC
Confidence 3355566 799999 8888877776 6776 444554 69999997554
No 26
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=4.8e-17 Score=174.17 Aligned_cols=282 Identities=12% Similarity=0.048 Sum_probs=161.9
Q ss_pred hcCceEEEEeccCCC--CccCCccc------------cCCCceeEEEEeCccccCC--CCccc-Ccc-cceeEeeeEe-e
Q 009416 113 ESEVKELVLVHWRSE--RRNLPEII------------FYVESLHVLELSYCKLQQP--SENVK-LFS-LRKLALREVC-A 173 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~--~~~lp~~l------------~~~~~L~~L~L~~~~~~~~--~~~~~-l~~-L~~L~L~~~~-~ 173 (535)
.++++.|++..+... ...+|... ..+++|++|+|++|.+... ..+.. ++. |++|+|++|. +
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 467888888764320 11122111 1578888888888765321 22222 444 8888887765 3
Q ss_pred ChhHHHHHHhCCCcccEEEEeecCCCce----e--eeCCCCCccEEEEeecCC---------------------------
Q 009416 174 DDQAIASLISGCPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSD--------------------------- 220 (535)
Q Consensus 174 ~~~~l~~~~~~~p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c~~--------------------------- 220 (535)
+...+..+...||+|++|+|++|...+. + ....+++|++|+++++..
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 5555666666778888888777742111 0 112245555555544411
Q ss_pred ---ccEEeecCCcccEEEEeeec-c---cCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcc-
Q 009416 221 ---IKRVEIKTSNVNALAIHQTY-L---FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS- 292 (535)
Q Consensus 221 ---l~~~~~~~~~L~~L~l~~~~-~---~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~- 292 (535)
+......+++|+.|.+.+.. . ......+..+++|+.|.++.+ ....+..++..+++|++|++++|. +..
T Consensus 232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~ 308 (592)
T 3ogk_B 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYAL-LETE 308 (592)
T ss_dssp GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCC-CCHH
T ss_pred HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc--chhHHHHHHhhcCCCcEEecCCCc-CCHH
Confidence 11111133445555544322 0 122335667889999988764 333455567789999999999987 332
Q ss_pred -c---ccCCCCCceEEeccCcc---cccccccCCceeeEEEc-C---------cch-------hhcccCcccceeEEEEe
Q 009416 293 -V---RISSPCLKTLILECCDK---LIQVEIETPNLSIFKYH-G---------DLI-------SFSSNALSLSETSLCFS 348 (535)
Q Consensus 293 -l---~~~~~~L~~L~l~~c~~---L~~l~~~~p~L~~L~~~-g---------~~~-------~~~~~l~~L~~L~l~~~ 348 (535)
+ ...+++|+.|++.++-. +..+...+++|+.|++. | +.. ....++++|+.|++..+
T Consensus 309 ~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 1 13678999999984422 12233456899999999 3 322 23456899999999443
Q ss_pred cccchhhHhHHHHHhhhhcccccceeEEEE----eeccccc----cccccccccCCCCcccceeeEEEE
Q 009416 349 SHLMVNIEWVVEYFEILAMFQKFSKVLNLQ----CREGENV----IVPQELRQIQSPPLTSVKKLNYSV 409 (535)
Q Consensus 349 ~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~----~~~l~~~----~~p~~~~~~~~~~l~~L~~L~l~~ 409 (535)
... ...+..+.. ++++|+ .|.++ ++.++.. .++. .+..+++|++|+++.
T Consensus 389 ~l~---~~~~~~l~~---~~~~L~-~L~l~~~~~~n~l~~~p~~~~~~~-----~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 389 DIT---NESLESIGT---YLKNLC-DFRLVLLDREERITDLPLDNGVRS-----LLIGCKKLRRFAFYL 445 (592)
T ss_dssp CCC---HHHHHHHHH---HCCSCC-EEEEEECSCCSCCSSCCCHHHHHH-----HHHHCTTCCEEEEEC
T ss_pred Ccc---HHHHHHHHh---hCCCCc-EEEEeecCCCccccCchHHHHHHH-----HHHhCCCCCEEEEec
Confidence 322 224444555 588899 88886 4444421 1211 233466777777754
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=166.49 Aligned_cols=281 Identities=14% Similarity=0.134 Sum_probs=159.3
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++.|++..+.... ..|..+..+++|++|+|++|.+...+.. .+++|++|++++|.+....++..++.+++|++|++
T Consensus 45 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 45 SKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp TTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred ccccEEecCCCccCC-cChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence 567777776654321 2245566677777777777766432222 67777777777776643222233566777777777
Q ss_pred eecCCCceeeeCCCCCc--cEEEEeecCC--ccEE----------------------------e-ecCCcccEEEEeeec
Q 009416 194 RSCEGLESLDLVNLSNL--KEIILVNTSD--IKRV----------------------------E-IKTSNVNALAIHQTY 240 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L--~~L~l~~c~~--l~~~----------------------------~-~~~~~L~~L~l~~~~ 240 (535)
++|...+ ..+..+++| +.|++.+|.- .... . ..+++|+.+++.++.
T Consensus 123 ~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 123 STTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp EESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred cCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 7765332 334445555 7777766522 0000 0 035566666666542
Q ss_pred --------ccCeEEecCcccccceeEeeccCCChHHHHHhcC--CCCCccEEEeecCCCCcccccCC-------------
Q 009416 241 --------LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCHKLTSVRISS------------- 297 (535)
Q Consensus 241 --------~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~--~~~~L~~L~L~~c~~l~~l~~~~------------- 297 (535)
.+.+ ..+..+++|+.|+++++.+++..+..+.. ..++|+.|+++++...+.++...
T Consensus 202 ~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 202 EDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp STTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred cccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 1111 14556666666666666665543333221 13466666666543222222211
Q ss_pred ---------------------CCCceEEeccCccccccc--ccCCceeeEEEcCcch-----hhcccCcccceeEEEEec
Q 009416 298 ---------------------PCLKTLILECCDKLIQVE--IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (535)
Q Consensus 298 ---------------------~~L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~ 349 (535)
.+|+.|+++++.- ..+. ...++|+.|.++++.. ..+.++++|+.|+++.+.
T Consensus 281 l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 359 (520)
T 2z7x_B 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359 (520)
T ss_dssp EEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred ccccccceecchhhhhcccccCceeEEEcCCCcc-ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc
Confidence 2456666655542 2222 4567888888887764 456788889998887654
Q ss_pred ccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEe
Q 009416 350 HLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR 410 (535)
Q Consensus 350 ~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~ 410 (535)
... ...++..+. .+++|+ .|.++.+.+. ..+|.. .+..+++|++|+++.+
T Consensus 360 l~~--l~~~~~~~~---~l~~L~-~L~Ls~N~l~-~~l~~~----~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 360 LKE--LSKIAEMTT---QMKSLQ-QLDISQNSVS-YDEKKG----DCSWTKSLLSLNMSSN 409 (520)
T ss_dssp CCB--HHHHHHHHT---TCTTCC-EEECCSSCCB-CCGGGC----SCCCCTTCCEEECCSS
T ss_pred cCc--cccchHHHh---hCCCCC-EEECCCCcCC-cccccc----hhccCccCCEEECcCC
Confidence 332 224556667 889999 8888877666 335542 2445677888777644
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=2e-15 Score=160.11 Aligned_cols=192 Identities=17% Similarity=0.110 Sum_probs=136.5
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
++++.|++..+.... ..|..+..+++|++|+|++|.+... ..+..+++|++|++++|.+.... ...++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEE
Confidence 578999988765331 2355678889999999999987432 45788999999999999885432 3346889999999
Q ss_pred EEeecCCCc-e--eeeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccC
Q 009416 192 EIRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (535)
Q Consensus 192 ~L~~c~~l~-~--~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~ 263 (535)
++++|.... . -.+.++++|++|++++|..+..+. ..+++|+.|++.++. ....+..+..+++|+.|+++.+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999986542 1 246678999999999986555554 267899999999887 43345567888899999998877
Q ss_pred CChHHHHHhcCCCCCccEEEeecCCCCcc------cccCCCCCceEEeccC
Q 009416 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS------VRISSPCLKTLILECC 308 (535)
Q Consensus 264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~------l~~~~~~L~~L~l~~c 308 (535)
.... ...++..+++|+.|+++++...+. +.....+|+.|++.++
T Consensus 184 ~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 184 SAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp STTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred cccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 6532 333345688999999988643221 1112456666666544
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=7.2e-17 Score=172.84 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=33.8
Q ss_pred CCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccE
Q 009416 138 VESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKE 212 (535)
Q Consensus 138 ~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~ 212 (535)
+++|++|+|++|.+... ..+..+++|++|+|++|.++.. .+..++.+++|++|+|++|... .+ .+..+++|++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCE
Confidence 45555555555544211 2344455555555555444221 1112344555555555554322 11 1233445555
Q ss_pred EEEeec
Q 009416 213 IILVNT 218 (535)
Q Consensus 213 L~l~~c 218 (535)
|++++|
T Consensus 152 L~Ls~N 157 (597)
T 3oja_B 152 LSMSNN 157 (597)
T ss_dssp EECCSS
T ss_pred EEeeCC
Confidence 555444
No 30
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=3.7e-17 Score=175.09 Aligned_cols=333 Identities=16% Similarity=0.131 Sum_probs=217.2
Q ss_pred CceeEEEEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccC-CCCccCCccccCCCceeEEEEeCccccCC------C
Q 009416 83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYCKLQQP------S 155 (535)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~-~~~~~lp~~l~~~~~L~~L~L~~~~~~~~------~ 155 (535)
..++.+.++.... ....+.. +. ...++++.|++..|. .....++.....|++|++|+|++|.+... .
T Consensus 105 ~~L~~L~L~~~~~----~~~~~~~-l~-~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVV----TDDCLEL-IA-KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCBC----CHHHHHH-HH-HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCCeEEeeCcEE----cHHHHHH-HH-HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 5788888874321 1111111 11 125799999999873 33333555556799999999999986432 2
Q ss_pred CcccCcccceeEeeeEe--eChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeec-------------
Q 009416 156 ENVKLFSLRKLALREVC--ADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT------------- 218 (535)
Q Consensus 156 ~~~~l~~L~~L~L~~~~--~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c------------- 218 (535)
....+++|++|+++++. ++...+..++..||+|++|++.+|..++.+ .+..+++|+.|.+..|
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 23467899999999886 566778888888999999999998554433 2334567777764433
Q ss_pred ------CCccEE--------------eecCCcccEEEEeeec-c-cCeEEecCcccccceeEeeccCCChHHHHHhcCCC
Q 009416 219 ------SDIKRV--------------EIKTSNVNALAIHQTY-L-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKL 276 (535)
Q Consensus 219 ------~~l~~~--------------~~~~~~L~~L~l~~~~-~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~ 276 (535)
..+..+ ...+++|++|+++++. . ......+..+++|+.|+++++ +.+..+..+...+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 222222 1146899999999887 1 112223568899999999988 6666777767779
Q ss_pred CCccEEEeec--------CCCCcccc-----cCCCCCceEEeccCcccc-----cccccCCceeeEEEc--C---cch--
Q 009416 277 PLLEYLSMTK--------CHKLTSVR-----ISSPCLKTLILECCDKLI-----QVEIETPNLSIFKYH--G---DLI-- 331 (535)
Q Consensus 277 ~~L~~L~L~~--------c~~l~~l~-----~~~~~L~~L~l~~c~~L~-----~l~~~~p~L~~L~~~--g---~~~-- 331 (535)
++|++|++.+ |..++... ..+++|++|.+ .|.++. .+....|+|+.|++. + +..
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 9999999954 33333221 24689999955 555552 222247899999998 3 111
Q ss_pred ---------hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccc
Q 009416 332 ---------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSV 402 (535)
Q Consensus 332 ---------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L 402 (535)
..+.++++|+.|+++. .. +...+..+.. .+++|+ .|.++.+.+....++. ....+++|
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~--~l--~~~~~~~l~~---~~~~L~-~L~L~~~~i~~~~~~~-----l~~~~~~L 483 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG--LL--TDKVFEYIGT---YAKKME-MLSVAFAGDSDLGMHH-----VLSGCDSL 483 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS--SC--CHHHHHHHHH---HCTTCC-EEEEESCCSSHHHHHH-----HHHHCTTC
T ss_pred CCchhhHHHHHHhhCCCccEEeecC--cc--cHHHHHHHHH---hchhcc-EeeccCCCCcHHHHHH-----HHhcCCCc
Confidence 1256789999999943 11 1224445555 589999 9999866665333322 11347899
Q ss_pred eeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416 403 KKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 403 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
++|+|+.++ ..+ .++.. +...+|+|+.|.+..++
T Consensus 484 ~~L~L~~n~-----------~~~--~~~~~----~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 484 RKLEIRDCP-----------FGD--KALLA----NASKLETMRSLWMSSCS 517 (594)
T ss_dssp CEEEEESCS-----------CCH--HHHHH----TGGGGGGSSEEEEESSC
T ss_pred CEEECcCCC-----------CcH--HHHHH----HHHhCCCCCEEeeeCCC
Confidence 999998554 111 12222 55677999999999664
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=5.6e-16 Score=153.01 Aligned_cols=207 Identities=19% Similarity=0.232 Sum_probs=136.4
Q ss_pred CCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEE
Q 009416 138 VESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (535)
Q Consensus 138 ~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~ 214 (535)
.+++++|+|+++.+. .++.++.+++|++|+|++|.+. .++..+..+++|++|++++|... .+ .+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999999884 4466888999999999999885 23444678999999999999654 33 466789999999
Q ss_pred EeecCCccEEee------------cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEE
Q 009416 215 LVNTSDIKRVEI------------KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (535)
Q Consensus 215 l~~c~~l~~~~~------------~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 282 (535)
+++|.....++. .+++|+.|+++++....++..+..+++|+.|++++|.+.+. +. .+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l-~~-~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GP-AIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC-CG-GGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC-ch-hhccCCCCCEE
Confidence 999854444332 36778888887777334555677777777777777776641 11 25567777777
Q ss_pred EeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHH
Q 009416 283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVV 359 (535)
Q Consensus 283 ~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 359 (535)
++++|...+.++. ..++|+.|++++|..+..+. ..+.++++|+.|+++.|...+ .++
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----------------~~~~~l~~L~~L~L~~n~~~~----~iP 294 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----------------LDIHRLTQLEKLDLRGCVNLS----RLP 294 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC----------------TTGGGCTTCCEEECTTCTTCC----CCC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc----------------hhhhcCCCCCEEeCCCCCchh----hcc
Confidence 7777666555543 23455555555554332221 123455556666555443333 334
Q ss_pred HHHhhhhcccccc
Q 009416 360 EYFEILAMFQKFS 372 (535)
Q Consensus 360 ~~l~~~~~l~~L~ 372 (535)
..+. ++++++
T Consensus 295 ~~l~---~L~~L~ 304 (328)
T 4fcg_A 295 SLIA---QLPANC 304 (328)
T ss_dssp GGGG---GSCTTC
T ss_pred HHHh---hccCce
Confidence 4444 555555
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=1.9e-16 Score=160.55 Aligned_cols=274 Identities=13% Similarity=0.094 Sum_probs=196.8
Q ss_pred CCCceeEEEEeCccccCCC--CcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccE
Q 009416 137 YVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE 212 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~ 212 (535)
..++++.|+++++.+...+ .+..+++|++|+++++.+.... ...+..+++|++|++++|...... .+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4689999999999884332 2578999999999999874321 123678999999999999743322 3567899999
Q ss_pred EEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416 213 IILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 213 L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
|++++| .+..++ ..+++|++|+++++. ....+..+..+++|+.|+++++.+.... +..+++|+.|++.++
T Consensus 122 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYN 196 (390)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSS
T ss_pred EECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccc
Confidence 999998 222333 257899999999987 3332345788999999999999887643 456899999999986
Q ss_pred CCCcccccCCCCCceEEeccCccccccc-ccCCceeeEEEcCcch---hhcccCcccceeEEEEecccchhhHhHHHHHh
Q 009416 288 HKLTSVRISSPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI---SFSSNALSLSETSLCFSSHLMVNIEWVVEYFE 363 (535)
Q Consensus 288 ~~l~~l~~~~~~L~~L~l~~c~~L~~l~-~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~ 363 (535)
. ++.++ ...+|+.|+++++.- ..+. ...++|+.|.+.++.. ..+.++++|+.|+++.+.... ..+..+.
T Consensus 197 ~-l~~~~-~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~ 269 (390)
T 3o6n_A 197 L-LSTLA-IPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFV 269 (390)
T ss_dssp C-CSEEE-CCSSCSEEECCSSCC-CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----EESGGGT
T ss_pred c-ccccC-CCCcceEEECCCCee-eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC----cChhHcc
Confidence 3 33332 235899999987643 2222 2346899999998876 567889999999997664333 2344556
Q ss_pred hhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcc
Q 009416 364 ILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPH 443 (535)
Q Consensus 364 ~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~ 443 (535)
.+++|+ .|.++.+.++ .+|. ....+++|++|+++.+. +..++. .+..+++
T Consensus 270 ---~l~~L~-~L~L~~n~l~--~~~~-----~~~~l~~L~~L~L~~n~------------------l~~~~~-~~~~l~~ 319 (390)
T 3o6n_A 270 ---KMQRLE-RLYISNNRLV--ALNL-----YGQPIPTLKVLDLSHNH------------------LLHVER-NQPQFDR 319 (390)
T ss_dssp ---TCSSCC-EEECCSSCCC--EEEC-----SSSCCTTCCEEECCSSC------------------CCCCGG-GHHHHTT
T ss_pred ---ccccCC-EEECCCCcCc--ccCc-----ccCCCCCCCEEECCCCc------------------ceecCc-cccccCc
Confidence 799999 8888877666 4555 55678899999997322 122222 2344589
Q ss_pred cceEEEeecC
Q 009416 444 AEMVSIEHGH 453 (535)
Q Consensus 444 Le~L~l~~~~ 453 (535)
|+.|.+..+.
T Consensus 320 L~~L~L~~N~ 329 (390)
T 3o6n_A 320 LENLYLDHNS 329 (390)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECCCCc
Confidence 9999998654
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=1.3e-16 Score=169.88 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=81.8
Q ss_pred CCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEe
Q 009416 207 LSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (535)
Q Consensus 207 l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 284 (535)
+++|+.|++.+| ..+......+ +|++|++.++....++. ..+++|+.|+++++........ ..+++|+.|++
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l 354 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDL 354 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEEC
T ss_pred cCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeC
Confidence 467777777776 2222222233 66666666665222221 3455566666655544332111 34555555555
Q ss_pred ecCCCCccc--c---cCCCCCceEEeccCccc--ccccccCCceeeEEEcCcch------hhcccCcccceeEEEEeccc
Q 009416 285 TKCHKLTSV--R---ISSPCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFSSHL 351 (535)
Q Consensus 285 ~~c~~l~~l--~---~~~~~L~~L~l~~c~~L--~~l~~~~p~L~~L~~~g~~~------~~~~~l~~L~~L~l~~~~~~ 351 (535)
+++...... + ...++|+.|+++++.-. ..-....++|+.|.+.++.. ..+.++++|+.|+++.+...
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 554322110 1 13345555555554321 00012334555555554432 13444555555555433222
Q ss_pred chhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416 352 MVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS 408 (535)
Q Consensus 352 ~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~ 408 (535)
. ..+..+. ++++|+ .|.++.+.+..+.+|. .+..+++|++|+++
T Consensus 435 ~----~~~~~~~---~l~~L~-~L~l~~n~l~~~~~p~-----~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 435 V----AFNGIFN---GLSSLE-VLKMAGNSFQENFLPD-----IFTELRNLTFLDLS 478 (570)
T ss_dssp E----CCTTTTT---TCTTCC-EEECTTCEEGGGEECS-----CCTTCTTCCEEECT
T ss_pred c----cchhhhh---cCCcCc-EEECcCCcCccccchh-----hhhcccCCCEEECC
Confidence 1 1222333 455555 5555433333223443 44445555555553
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=5.3e-16 Score=164.50 Aligned_cols=280 Identities=18% Similarity=0.141 Sum_probs=144.7
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC-C-CcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-S-ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
++++|++..+.... ..|..+..+++|++|+|++|.+... + .++.+++|++|++++|.+........++.+++|++|+
T Consensus 51 ~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 51 NLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred cccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 45555554433221 1123344445555555555544222 1 1444555555555555442211111234455555555
Q ss_pred EeecCCCcee---eeCCCCCccEEEEeecC--------------------------CccEEee-cCCcccEEEEeeec-c
Q 009416 193 IRSCEGLESL---DLVNLSNLKEIILVNTS--------------------------DIKRVEI-KTSNVNALAIHQTY-L 241 (535)
Q Consensus 193 L~~c~~l~~~---~~~~l~~L~~L~l~~c~--------------------------~l~~~~~-~~~~L~~L~l~~~~-~ 241 (535)
+++|..++.+ .+.++++|++|++++|. .+..... .+++|+.|+++++. .
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 5555433333 23334445555554441 1111001 35777888887776 2
Q ss_pred cC-e-E-EecCcccccceeEeeccCCChHHHHH---hcCCCCCccEEEeecCCCCc--ccc-------cCC---------
Q 009416 242 FP-I-E-VNVSSCGNLKCLKFDFLPIEDEWLCN---GISKLPLLEYLSMTKCHKLT--SVR-------ISS--------- 297 (535)
Q Consensus 242 ~~-~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~---l~~~~~~L~~L~L~~c~~l~--~l~-------~~~--------- 297 (535)
+. . + .....+++|+.|+++++.+.+..+.. .+..+++|+.|++.+|...+ .++ ...
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 11 0 1 12234677888888877777654443 23556777888777753211 110 012
Q ss_pred --------------------CCCceEEeccCccccccc----ccCCceeeEEEcCcch--------hhcccCcccceeEE
Q 009416 298 --------------------PCLKTLILECCDKLIQVE----IETPNLSIFKYHGDLI--------SFSSNALSLSETSL 345 (535)
Q Consensus 298 --------------------~~L~~L~l~~c~~L~~l~----~~~p~L~~L~~~g~~~--------~~~~~l~~L~~L~l 345 (535)
.+|+.|++.++. +..+. ...++|+.|+++++.. ..++++++|+.|++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 345555555432 22232 1367888888887765 12567788888888
Q ss_pred EEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416 346 CFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV 409 (535)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~ 409 (535)
+.+.... .......+. .+++|+ .|.++.+.++ .+|+ .+..+++|++|+++.
T Consensus 369 s~N~l~~--~~~~~~~~~---~l~~L~-~L~Ls~N~l~--~lp~-----~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 369 SQNHLRS--MQKTGEILL---TLKNLT-SLDISRNTFH--PMPD-----SCQWPEKMRFLNLSS 419 (549)
T ss_dssp TTSCCCC--HHHHHHHGG---GCTTCC-EEECTTCCCC--CCCS-----CCCCCTTCCEEECTT
T ss_pred cCCcccc--cccchhhhh---cCCCCC-EEECCCCCCc--cCCh-----hhcccccccEEECCC
Confidence 6553332 001124456 789999 8888866666 5676 556677888888763
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=170.32 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=107.4
Q ss_pred hcCceEEEEeccCCCCccC-CccccCCCceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHH-HHHhCCCcc
Q 009416 113 ESEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIA-SLISGCPLI 188 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~-~~~~~~p~L 188 (535)
..+|+.|+++.+.. ...+ |..+.++++|++|+|++|.+. .+..+.++++|++|+|++|.+.+..+. ..+..+++|
T Consensus 47 l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 47 LEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp CCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred cccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 35899999987643 2344 566788899999999999873 346778899999999999887532221 236788999
Q ss_pred cEEEEeecCCCcee---eeCCCCCccEEEEeecCC--ccEEee-cC--CcccEEEEeeec-ccCeEEecCcccc------
Q 009416 189 EYLEIRSCEGLESL---DLVNLSNLKEIILVNTSD--IKRVEI-KT--SNVNALAIHQTY-LFPIEVNVSSCGN------ 253 (535)
Q Consensus 189 e~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~--l~~~~~-~~--~~L~~L~l~~~~-~~~~~~~~~~l~~------ 253 (535)
++|++++|...+.. .+.++++|++|++++|.- ...-.+ .+ ++|+.|+++++. ....+..+..+++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 99999998754321 467789999999998721 111111 22 788888888877 4444445555554
Q ss_pred cceeEeeccCCChHH
Q 009416 254 LKCLKFDFLPIEDEW 268 (535)
Q Consensus 254 L~~L~L~~~~~~~~~ 268 (535)
|+.|+++++.+++..
T Consensus 206 L~~L~Ls~n~l~~~~ 220 (844)
T 3j0a_A 206 LEILDVSGNGWTVDI 220 (844)
T ss_dssp BSEEBCSSCCSSTTT
T ss_pred eeEEecCCCcCchhH
Confidence 888888887665543
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=6.5e-16 Score=159.52 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=108.5
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++.|++..+... .+| .+..+++|++|+|++|.+...+ ++.+++|++|++++|.++.. + ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~--~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT--DMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCC--CCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcc--cCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEEC
Confidence 46666666654433 234 4556666666666666654332 55666666666666665332 1 455666666666
Q ss_pred eecCCCceeeeCCCCCccEEEEeecCCccEEee-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ 271 (535)
++|.. ..+.+..+++|++|++++|. +..+.+ .+++|+.|+++++. .+.+ .+..+++|+.|+++++.+++..
T Consensus 114 ~~N~l-~~l~~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--- 186 (457)
T 3bz5_A 114 DTNKL-TKLDVSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--- 186 (457)
T ss_dssp CSSCC-SCCCCTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---
T ss_pred CCCcC-CeecCCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---
Confidence 66642 22445556666666666551 111222 45566666666553 2221 3555566666666665555421
Q ss_pred hcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccccc-ccCCceeeEEEcCcch--hhcccCcccceeE
Q 009416 272 GISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI--SFSSNALSLSETS 344 (535)
Q Consensus 272 l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~-~~~p~L~~L~~~g~~~--~~~~~l~~L~~L~ 344 (535)
+..+++|+.|+++++.- +.++. ..++|+.|+++++. +..+. ...++|+.|.++++.. ...+.+++|+.++
T Consensus 187 -l~~l~~L~~L~l~~N~l-~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~ 260 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNI-TKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH 260 (457)
T ss_dssp -CTTCTTCCEEECCSSCC-SCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred -cccCCCCCEEECcCCcC-CeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEe
Confidence 44555666666655432 22222 23455555555442 22222 1334555555555543 2233444444443
No 37
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=9.3e-17 Score=166.46 Aligned_cols=322 Identities=15% Similarity=0.114 Sum_probs=210.2
Q ss_pred HHHhcCceEEEEeccCCCCc---cCCccccCCCceeEEEEeCccccCC--C-CcccCc----ccceeEeeeEeeCh---h
Q 009416 110 LAIESEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP--S-ENVKLF----SLRKLALREVCADD---Q 176 (535)
Q Consensus 110 ~~~~~~l~~L~L~~~~~~~~---~lp~~l~~~~~L~~L~L~~~~~~~~--~-~~~~l~----~L~~L~L~~~~~~~---~ 176 (535)
....++++.|++..+..... .++..+..+++|++|+|++|.+... . ....++ +|++|++++|.+++ .
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 34467999999998765432 4667777889999999999977321 1 112344 79999999998854 3
Q ss_pred HHHHHHhCCCcccEEEEeecCCCce----e--e-eCCCCCccEEEEeecCCcc----EEe---ecCCcccEEEEeeec-c
Q 009416 177 AIASLISGCPLIEYLEIRSCEGLES----L--D-LVNLSNLKEIILVNTSDIK----RVE---IKTSNVNALAIHQTY-L 241 (535)
Q Consensus 177 ~l~~~~~~~p~Le~L~L~~c~~l~~----~--~-~~~l~~L~~L~l~~c~~l~----~~~---~~~~~L~~L~l~~~~-~ 241 (535)
.+...+..+++|++|++++|..-.. + . ....++|++|++++|.--. .+. ..+++|++|+++++. .
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 4566678999999999999874211 1 1 2224689999999882211 111 146899999999887 1
Q ss_pred cCeEEecC-----cccccceeEeeccCCChHH---HHHhcCCCCCccEEEeecCCCCccc---------ccCCCCCceEE
Q 009416 242 FPIEVNVS-----SCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLTSV---------RISSPCLKTLI 304 (535)
Q Consensus 242 ~~~~~~~~-----~l~~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~L~~c~~l~~l---------~~~~~~L~~L~ 304 (535)
......+. ..++|+.|+++++.+++.. +...+..+++|++|+++++. ++.. ....++|++|+
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEE
Confidence 11111121 2458999999999888753 34445678999999999874 2221 11357899999
Q ss_pred eccCccccc-----cc---ccCCceeeEEEcCcch-----hhc-----ccCcccceeEEEEecccchhhHhHHHHHhhhh
Q 009416 305 LECCDKLIQ-----VE---IETPNLSIFKYHGDLI-----SFS-----SNALSLSETSLCFSSHLMVNIEWVVEYFEILA 366 (535)
Q Consensus 305 l~~c~~L~~-----l~---~~~p~L~~L~~~g~~~-----~~~-----~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~ 366 (535)
+++|. +.. +. ...++|+.|+++++.. ..+ .+.++|+.|+++.|.........++..+.
T Consensus 263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--- 338 (461)
T 1z7x_W 263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA--- 338 (461)
T ss_dssp CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH---
T ss_pred CcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh---
Confidence 99883 322 22 2368999999998865 112 23368999999766433312334677777
Q ss_pred cccccceeEEEEeeccccccccccccccCCC-CcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccc
Q 009416 367 MFQKFSKVLNLQCREGENVIVPQELRQIQSP-PLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAE 445 (535)
Q Consensus 367 ~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le 445 (535)
.+++|+ .|.++.+.+.... +..+.. .+. ..++|++|+++.+. ..+ .++..++. .+..+|+|+
T Consensus 339 ~~~~L~-~L~Ls~n~i~~~~-~~~l~~-~l~~~~~~L~~L~L~~n~-----------i~~--~~~~~l~~-~l~~~~~L~ 401 (461)
T 1z7x_W 339 QNRFLL-ELQISNNRLEDAG-VRELCQ-GLGQPGSVLRVLWLADCD-----------VSD--SSCSSLAA-TLLANHSLR 401 (461)
T ss_dssp HCSSCC-EEECCSSBCHHHH-HHHHHH-HHTSTTCCCCEEECTTSC-----------CCH--HHHHHHHH-HHHHCCCCC
T ss_pred hCCCcc-EEEccCCcccccc-HHHHHH-HHcCCCCceEEEECCCCC-----------CCh--hhHHHHHH-HHHhCCCcc
Confidence 889999 8988866665221 111111 121 25699999996332 111 12333444 556679999
Q ss_pred eEEEeecC
Q 009416 446 MVSIEHGH 453 (535)
Q Consensus 446 ~L~l~~~~ 453 (535)
.|.+..+.
T Consensus 402 ~L~l~~N~ 409 (461)
T 1z7x_W 402 ELDLSNNC 409 (461)
T ss_dssp EEECCSSS
T ss_pred EEECCCCC
Confidence 99998553
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=6.2e-15 Score=155.21 Aligned_cols=297 Identities=10% Similarity=0.038 Sum_probs=180.3
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC---CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcc-
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ---PSENVKLFSLRKLALREVCADDQAIASLISGCPLI- 188 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~L- 188 (535)
.+++++|+++.+... .+|.. .+++|++|+|++|.+.. |..++.+++|++|++++|.+.... +..+++|
T Consensus 68 l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~ 139 (520)
T 2z7x_B 68 NQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLN 139 (520)
T ss_dssp CTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSC
T ss_pred ccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccce
Confidence 368999999887544 67766 78999999999998743 356788999999999999886532 4566777
Q ss_pred -cEEEEeecCC--Cce----------------------------eeeCCCCCccEEEEeecC------------------
Q 009416 189 -EYLEIRSCEG--LES----------------------------LDLVNLSNLKEIILVNTS------------------ 219 (535)
Q Consensus 189 -e~L~L~~c~~--l~~----------------------------~~~~~l~~L~~L~l~~c~------------------ 219 (535)
++|++++|.. .+. ..+..+++|+.|++++|.
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l 219 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGC
T ss_pred eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccc
Confidence 9999988865 110 012234556666665542
Q ss_pred -CccEEee-----------------cCCcccEEEEeeec-ccCeEEec-----CcccccceeEeeccCCCh--HHHHHhc
Q 009416 220 -DIKRVEI-----------------KTSNVNALAIHQTY-LFPIEVNV-----SSCGNLKCLKFDFLPIED--EWLCNGI 273 (535)
Q Consensus 220 -~l~~~~~-----------------~~~~L~~L~l~~~~-~~~~~~~~-----~~l~~L~~L~L~~~~~~~--~~l~~l~ 273 (535)
.++.+.+ ..++|++|+++++. .+.++..+ ..+++|+.++++.+.+.. ..+..++
T Consensus 220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~ 299 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299 (520)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH
T ss_pred cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhccc
Confidence 1111111 13478888888887 43455555 778888888888777621 2222211
Q ss_pred CCCCCccEEEeecCCCCccc-ccCCCCCceEEeccCccccccc---ccCCceeeEEEcCcch-------hhcccCcccce
Q 009416 274 SKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-------SFSSNALSLSE 342 (535)
Q Consensus 274 ~~~~~L~~L~L~~c~~l~~l-~~~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~-------~~~~~l~~L~~ 342 (535)
.-++|+.|+++++...... +...++|++|+++++.--..+. ...++|+.|.++++.. ..+.++++|+.
T Consensus 300 -~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 300 -SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp -HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred -ccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 1246778888776532221 1355677888877764322111 2456777887777654 23567778888
Q ss_pred eEEEEecccchhhHhHHH-HHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchh
Q 009416 343 TSLCFSSHLMVNIEWVVE-YFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANV 421 (535)
Q Consensus 343 L~l~~~~~~~~~~~~l~~-~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 421 (535)
|+++.+.... .++. .+. .+++|+ .|.++.+.+. +.+|. .++ ++|++|+++.+
T Consensus 379 L~Ls~N~l~~----~l~~~~~~---~l~~L~-~L~Ls~N~l~-~~~~~-----~l~--~~L~~L~Ls~N----------- 431 (520)
T 2z7x_B 379 LDISQNSVSY----DEKKGDCS---WTKSLL-SLNMSSNILT-DTIFR-----CLP--PRIKVLDLHSN----------- 431 (520)
T ss_dssp EECCSSCCBC----CGGGCSCC---CCTTCC-EEECCSSCCC-GGGGG-----SCC--TTCCEEECCSS-----------
T ss_pred EECCCCcCCc----ccccchhc---cCccCC-EEECcCCCCC-cchhh-----hhc--ccCCEEECCCC-----------
Confidence 8776553222 1121 234 567777 7777765555 34444 333 47777777522
Q ss_pred cccccccchhHHhhhhhccCcccceEEEeecC
Q 009416 422 RARSSRFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 422 ~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
.+..++..++ .+++|+.|.+..+.
T Consensus 432 -------~l~~ip~~~~-~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 432 -------KIKSIPKQVV-KLEALQELNVASNQ 455 (520)
T ss_dssp -------CCCCCCGGGG-GCTTCCEEECCSSC
T ss_pred -------cccccchhhh-cCCCCCEEECCCCc
Confidence 1223333344 45777777777554
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=4.7e-16 Score=166.48 Aligned_cols=249 Identities=13% Similarity=0.101 Sum_probs=173.0
Q ss_pred CCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccE
Q 009416 137 YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE 212 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~ 212 (535)
.+++++.|+++++.+... ..+..+++|++|+|++|.++... +..++.+++|++|+|++|...+.. .+.++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 458899999999987433 23578999999999999874322 223678999999999999743322 3567899999
Q ss_pred EEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416 213 IILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 213 L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
|++++| .+..++ ..+++|++|+++++. ....+..+.++++|+.|++++|.+++.. +..+++|+.|+++++
T Consensus 128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSS
T ss_pred EEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccC
Confidence 999998 222332 267899999999988 4333446889999999999999887643 455788999999875
Q ss_pred CCCcccccCCCCCceEEeccCccccccc-ccCCceeeEEEcCcch---hhcccCcccceeEEEEecccchhhHhHHHHHh
Q 009416 288 HKLTSVRISSPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI---SFSSNALSLSETSLCFSSHLMVNIEWVVEYFE 363 (535)
Q Consensus 288 ~~l~~l~~~~~~L~~L~l~~c~~L~~l~-~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~ 363 (535)
. +..++ ...+|+.|+++++.- ..+. ...++|+.|.++++.. ..+.++++|+.|+++.+.... ..+..+.
T Consensus 203 ~-l~~l~-~~~~L~~L~ls~n~l-~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~ 275 (597)
T 3oja_B 203 L-LSTLA-IPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFV 275 (597)
T ss_dssp C-CSEEE-CCTTCSEEECCSSCC-CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----EESGGGT
T ss_pred c-ccccc-CCchhheeeccCCcc-cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC----CCHHHhc
Confidence 3 23332 235788888876642 2222 2235778888777765 556777888888886554333 2244445
Q ss_pred hhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416 364 ILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV 409 (535)
Q Consensus 364 ~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~ 409 (535)
.+++|+ .|.++.+.+. .+|. ....+++|++|+|+.
T Consensus 276 ---~l~~L~-~L~Ls~N~l~--~l~~-----~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 276 ---KMQRLE-RLYISNNRLV--ALNL-----YGQPIPTLKVLDLSH 310 (597)
T ss_dssp ---TCSSCC-EEECTTSCCC--EEEC-----SSSCCTTCCEEECCS
T ss_pred ---CccCCC-EEECCCCCCC--CCCc-----ccccCCCCcEEECCC
Confidence 677888 7777766555 3454 445667788888763
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.58 E-value=1.6e-15 Score=161.24 Aligned_cols=143 Identities=18% Similarity=0.167 Sum_probs=94.1
Q ss_pred CCCCCccEEEeecCCCCccccc---CCCCCceEEeccCcccccc------cccCCceeeEEEcCcch------hhcccCc
Q 009416 274 SKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV------EIETPNLSIFKYHGDLI------SFSSNAL 338 (535)
Q Consensus 274 ~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l------~~~~p~L~~L~~~g~~~------~~~~~l~ 338 (535)
..+++|+.|+++++...+.++. ..++|+.|+++++. +..+ ....++|+.|.++++.. ..+.+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 5678899999988755443333 34688888888763 3222 13457888888887765 2356778
Q ss_pred ccceeEEEEecccchhhHhHHHHHhhhhcc-cccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccc
Q 009416 339 SLSETSLCFSSHLMVNIEWVVEYFEILAMF-QKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFS 417 (535)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l-~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 417 (535)
+|+.|+++.+.... . ... .+ ++|+ .|.++.+.++ .+|+ .+..+++|++|+++.+
T Consensus 429 ~L~~L~l~~n~l~~----~---~~~---~l~~~L~-~L~L~~N~l~--~ip~-----~~~~l~~L~~L~L~~N------- 483 (562)
T 3a79_B 429 SILVLNLSSNMLTG----S---VFR---CLPPKVK-VLDLHNNRIM--SIPK-----DVTHLQALQELNVASN------- 483 (562)
T ss_dssp TCCEEECCSSCCCG----G---GGS---SCCTTCS-EEECCSSCCC--CCCT-----TTTSSCCCSEEECCSS-------
T ss_pred cCCEEECCCCCCCc----c---hhh---hhcCcCC-EEECCCCcCc--ccCh-----hhcCCCCCCEEECCCC-------
Confidence 89998886553322 1 112 34 5888 8888866666 6776 5557888999988632
Q ss_pred cchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416 418 VANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 418 ~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
.+..++...+..+++|+.|.+..++
T Consensus 484 -----------~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 484 -----------QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp -----------CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred -----------CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 2233444446777899999888543
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=2.1e-15 Score=155.67 Aligned_cols=267 Identities=15% Similarity=0.129 Sum_probs=160.8
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.++++.|++..+.... +| +..+++|++|++++|.+... .++.+++|++|++++|.++.- + ++.+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEE
Confidence 4578888877765433 33 66678888888888877543 367778888888888777432 2 56777888888
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecCCccEEee-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ 271 (535)
+++|.. ..+.+..+++|+.|++++|..+..+.+ .+++|+.|+++++.-..++ +..+++|+.|+++++.+++. .
T Consensus 134 l~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~ 207 (457)
T 3bz5_A 134 CARNTL-TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---D 207 (457)
T ss_dssp CTTSCC-SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---C
T ss_pred CCCCcc-ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---c
Confidence 877753 334566677788888777755554444 5677777777777622222 66777777777777776654 1
Q ss_pred hcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcc----------cccccccCCceeeEEEcCcch---hhcccC
Q 009416 272 GISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDK----------LIQVEIETPNLSIFKYHGDLI---SFSSNA 337 (535)
Q Consensus 272 l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~----------L~~l~~~~p~L~~L~~~g~~~---~~~~~l 337 (535)
+..+++|+.|+++++.- +.++. ..++|+.|+++++.- ++.+.....+|+.++++++.. ...+++
T Consensus 208 -l~~l~~L~~L~Ls~N~l-~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l 285 (457)
T 3bz5_A 208 -LNQNIQLTFLDCSSNKL-TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285 (457)
T ss_dssp -CTTCTTCSEEECCSSCC-SCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred -cccCCCCCEEECcCCcc-cccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccccc
Confidence 55677777777777542 23443 345677777665421 111112222334444444332 334566
Q ss_pred cccceeEEEEecccc-hh--hHhHHH-HHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416 338 LSLSETSLCFSSHLM-VN--IEWVVE-YFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV 409 (535)
Q Consensus 338 ~~L~~L~l~~~~~~~-~~--~~~l~~-~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~ 409 (535)
++|+.|+++.+...+ .. ...+.. -+. +.++|+ .|.++.+.++ + + .+..+++|+.|+++.
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~---~~~~L~-~L~L~~N~l~-~-l-------~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLS---QNPKLV-YLYLNNTELT-E-L-------DVSHNTKLKSLSCVN 348 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCT---TCTTCC-EEECTTCCCS-C-C-------CCTTCTTCSEEECCS
T ss_pred ccCCEEECCCCcccceeccCCCcceEechh---hcccCC-EEECCCCccc-c-c-------ccccCCcCcEEECCC
Confidence 788888875553221 00 000000 023 567888 7777766666 2 2 245678899998863
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=2e-15 Score=164.31 Aligned_cols=307 Identities=14% Similarity=0.098 Sum_probs=145.5
Q ss_pred CceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 115 EVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
+++.|++..+... .+|. .+..+++|++|+|++|.+... ..+.++++|++|++++|.++.- ....++.+++|++|
T Consensus 26 ~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 26 NITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTEL 102 (680)
T ss_dssp TCSEEECCSSCCC--CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEE
T ss_pred CCcEEECCCCCCC--CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEE
Confidence 4555555544322 2332 344455555555555554221 2234555555555555544211 01123455555555
Q ss_pred EEeecCCCce--eeeCCCCCccEEEEeecCC--ccEE-eecCCcccEEEEeeec-ccCeEEec--CcccccceeEeeccC
Q 009416 192 EIRSCEGLES--LDLVNLSNLKEIILVNTSD--IKRV-EIKTSNVNALAIHQTY-LFPIEVNV--SSCGNLKCLKFDFLP 263 (535)
Q Consensus 192 ~L~~c~~l~~--~~~~~l~~L~~L~l~~c~~--l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~--~~l~~L~~L~L~~~~ 263 (535)
++++|...+- -.+..+++|++|++++|.- ...- ...+++|+.|+++++. ....+..+ ..+++|+.|+++++.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 5555533211 1234455555555555511 1000 0134555555555544 11111111 123455555555554
Q ss_pred CChHHHHHhcCCCCCccEEEeecCCCCcccc------cCCCCCceEEeccCccccc----cc-ccCCceeeEEEcCcch-
Q 009416 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR------ISSPCLKTLILECCDKLIQ----VE-IETPNLSIFKYHGDLI- 331 (535)
Q Consensus 264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~------~~~~~L~~L~l~~c~~L~~----l~-~~~p~L~~L~~~g~~~- 331 (535)
+.+..... +..+++|+.|.+.++....... ....+|+.|+++++.--.. +. ...++|+.|+++++..
T Consensus 183 l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 183 IKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred ccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 44322211 3344555555554432211000 0225677777766532111 10 1114588888877654
Q ss_pred ----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccc----cccccccccccCCCCcccce
Q 009416 332 ----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGE----NVIVPQELRQIQSPPLTSVK 403 (535)
Q Consensus 332 ----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~----~~~~p~~~~~~~~~~l~~L~ 403 (535)
..+.++++|+.|++..+.... ..+..+. ++++|+ .|.++.+... ...+|. +....+..+++|+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~---~l~~L~-~L~L~~~~~~~~~~~~~lp~-i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQH----LFSHSLH---GLFNVR-YLNLKRSFTKQSISLASLPK-IDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSE----ECTTTTT---TCTTCC-EEECTTCBCCC------CCE-ECTTTTTTCTTCC
T ss_pred ccCcccccCcccccEeeCCCCccCc----cChhhhc---CCCCcc-EEeccchhhhcccccccccc-cChhhcccCCCCC
Confidence 346777888888886553332 2234445 678888 7776522111 012221 1112455677888
Q ss_pred eeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeec
Q 009416 404 KLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHG 452 (535)
Q Consensus 404 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~ 452 (535)
+|+++.+. +..+....+..+++|+.|.+..+
T Consensus 333 ~L~l~~n~------------------l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 333 HLNMEDND------------------IPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp EEECCSCC------------------BCCCCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCc------------------cCCCChhHhccccCCcEEECCCC
Confidence 88886321 22233446777899999998744
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.57 E-value=1.1e-15 Score=149.81 Aligned_cols=239 Identities=15% Similarity=0.068 Sum_probs=133.8
Q ss_pred cCceEEEEeccCCCC-ccCCccccCCCceeEEEEeC-cccc--CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416 114 SEVKELVLVHWRSER-RNLPEIIFYVESLHVLELSY-CKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~-~~lp~~l~~~~~L~~L~L~~-~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le 189 (535)
.+++.|++..+.... ..+|..+..+++|++|+|++ +.+. .|..++++++|++|++++|.++.. ++..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence 367778877765432 15777888888888888884 6553 345677888888888888876422 223366788888
Q ss_pred EEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---ecCC-cccEEEEeeec-ccCeEEecCcccccceeEeecc
Q 009416 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTS-NVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFL 262 (535)
Q Consensus 190 ~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~~~~-~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~ 262 (535)
+|++++|...+.+ .+..+++|++|++++|.--..++ ..++ +|+.|+++++. .+..+..+..++ |+.|+++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 8888887543222 34556677777776652211111 1222 45555555444 222223333333 445555444
Q ss_pred CCChHHHHHhcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccce
Q 009416 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSE 342 (535)
Q Consensus 263 ~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~ 342 (535)
.+.+... ..+..+++|+.|+++++..... . ..+..+++|++
T Consensus 208 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-------------------------------------~-~~~~~l~~L~~ 248 (313)
T 1ogq_A 208 MLEGDAS-VLFGSDKNTQKIHLAKNSLAFD-------------------------------------L-GKVGLSKNLNG 248 (313)
T ss_dssp EEEECCG-GGCCTTSCCSEEECCSSEECCB-------------------------------------G-GGCCCCTTCCE
T ss_pred cccCcCC-HHHhcCCCCCEEECCCCceeee-------------------------------------c-CcccccCCCCE
Confidence 4433211 1133444444444444221000 0 12334566777
Q ss_pred eEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416 343 TSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS 408 (535)
Q Consensus 343 L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~ 408 (535)
|+++.+...+ .++..+. .+++|+ .|.++.+.+. +.+|+ . ..+++|+.|++.
T Consensus 249 L~Ls~N~l~~----~~p~~l~---~l~~L~-~L~Ls~N~l~-~~ip~-----~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 249 LDLRNNRIYG----TLPQGLT---QLKFLH-SLNVSFNNLC-GEIPQ-----G-GNLQRFDVSAYA 299 (313)
T ss_dssp EECCSSCCEE----CCCGGGG---GCTTCC-EEECCSSEEE-EECCC-----S-TTGGGSCGGGTC
T ss_pred EECcCCcccC----cCChHHh---cCcCCC-EEECcCCccc-ccCCC-----C-ccccccChHHhc
Confidence 7665543332 3344456 788888 8888766666 56665 3 567788887775
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.54 E-value=1e-14 Score=155.06 Aligned_cols=278 Identities=13% Similarity=0.072 Sum_probs=163.7
Q ss_pred cCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
++++.|+++.+... .+| ..+..+++|++|+|++|.+.. +..+..+++|++|++++|.++. ++.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CCTTCSE
T ss_pred CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--ccccCCE
Confidence 68888888876543 444 467778999999999987743 2557788999999999887742 2221 6889999
Q ss_pred EEEeecCCCc-e--eeeCCCCCccEEEEeecCCccEEee-cCCcc--cEEEEeeecc---cCe-----------------
Q 009416 191 LEIRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVEI-KTSNV--NALAIHQTYL---FPI----------------- 244 (535)
Q Consensus 191 L~L~~c~~l~-~--~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L--~~L~l~~~~~---~~~----------------- 244 (535)
|++++|...+ . -.+.++++|++|+++++.- ....+ .+++| +.|+++++.. ...
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcc-ccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 9999887543 2 2466788999999988721 11111 34555 8888887642 000
Q ss_pred ---------EEecCcccccceeEeeccC----------------------------CChHHHHHhc--CCCCCccEEEee
Q 009416 245 ---------EVNVSSCGNLKCLKFDFLP----------------------------IEDEWLCNGI--SKLPLLEYLSMT 285 (535)
Q Consensus 245 ---------~~~~~~l~~L~~L~L~~~~----------------------------~~~~~l~~l~--~~~~~L~~L~L~ 285 (535)
...+..+++|+.++++++. +.+..+..+. ...++|++|++.
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 1122345566666666553 2221111110 112367777777
Q ss_pred cCCCCcccccCC-----CC-----------------------------CceEEeccCccccccc--ccCCceeeEEEcCc
Q 009416 286 KCHKLTSVRISS-----PC-----------------------------LKTLILECCDKLIQVE--IETPNLSIFKYHGD 329 (535)
Q Consensus 286 ~c~~l~~l~~~~-----~~-----------------------------L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g~ 329 (535)
++...+.++... .+ |+.|++.++.-. .+. ...++|+.|.++++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMVCPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCCCCSSCCCCCEEECCSS
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-cccCccCCCCceEEECCCC
Confidence 654333333322 23 444444443221 111 34567888888776
Q ss_pred ch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCccccee
Q 009416 330 LI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKK 404 (535)
Q Consensus 330 ~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~ 404 (535)
.. ..+.++++|+.|+++.+.... ...++..+. ++++|+ .|.++.+.+. ..+|+. .+..+++|++
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~---~l~~L~-~L~l~~N~l~-~~~~~~----~~~~l~~L~~ 432 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTK---NMSSLE-TLDVSLNSLN-SHAYDR----TCAWAESILV 432 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTT---TCTTCC-EEECTTSCCB-SCCSSC----CCCCCTTCCE
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCC--cccchhhhc---CCCCCC-EEECCCCcCC-CccChh----hhcCcccCCE
Confidence 54 345778888888886553222 113344456 788888 7777766665 335542 2345567777
Q ss_pred eEEEEe
Q 009416 405 LNYSVR 410 (535)
Q Consensus 405 L~l~~~ 410 (535)
|+++.+
T Consensus 433 L~l~~n 438 (562)
T 3a79_B 433 LNLSSN 438 (562)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 776543
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=4.6e-16 Score=161.23 Aligned_cols=314 Identities=16% Similarity=0.090 Sum_probs=201.0
Q ss_pred cCceEEEEeccCCCCccCCccccCCC----ceeEEEEeCccccC------CCCcccCcccceeEeeeEeeChhHHHHHH-
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVE----SLHVLELSYCKLQQ------PSENVKLFSLRKLALREVCADDQAIASLI- 182 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~----~L~~L~L~~~~~~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~~~- 182 (535)
+++++|+++.+......+......++ +|++|+|++|.+.. +..+..+++|++|++++|.+++.....+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 68999999876533222222222233 79999999998753 24567889999999999988655444332
Q ss_pred ---hCCCcccEEEEeecCCCce----e--eeCCCCCccEEEEeecCCccEE-----ee----cCCcccEEEEeeec-ccC
Q 009416 183 ---SGCPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSDIKRV-----EI----KTSNVNALAIHQTY-LFP 243 (535)
Q Consensus 183 ---~~~p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c~~l~~~-----~~----~~~~L~~L~l~~~~-~~~ 243 (535)
...++|++|++++|..-.. + .+..+++|++|++++|. +... .- ..++|++|+++++. ...
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 2356899999999964321 1 23446899999999883 2211 11 24699999999887 221
Q ss_pred ----eEEecCcccccceeEeeccCCChHHHH----HhcCCCCCccEEEeecCCCCcc-----ccc---CCCCCceEEecc
Q 009416 244 ----IEVNVSSCGNLKCLKFDFLPIEDEWLC----NGISKLPLLEYLSMTKCHKLTS-----VRI---SSPCLKTLILEC 307 (535)
Q Consensus 244 ----~~~~~~~l~~L~~L~L~~~~~~~~~l~----~l~~~~~~L~~L~L~~c~~l~~-----l~~---~~~~L~~L~l~~ 307 (535)
+...+..+++|++|+++++.+.+.... .+...+++|++|++++|. ++. ++. ..++|++|++++
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCC
Confidence 234466789999999999988776543 334568999999999984 333 222 367899999988
Q ss_pred Cccc----ccc----cccCCceeeEEEcCcch---------hhcccCcccceeEEEEecccchhhHhHHHHHhhhhc-cc
Q 009416 308 CDKL----IQV----EIETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAM-FQ 369 (535)
Q Consensus 308 c~~L----~~l----~~~~p~L~~L~~~g~~~---------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~-l~ 369 (535)
+.-- ..+ ....++|+.|.++++.. ..+.++++|+.|+++.+.........+.+.+. . .+
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~---~~~~ 370 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG---QPGS 370 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT---STTC
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc---CCCC
Confidence 7421 111 11236899999988764 23456799999999766322211122223332 2 56
Q ss_pred ccceeEEEEeecccc---ccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccce
Q 009416 370 KFSKVLNLQCREGEN---VIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEM 446 (535)
Q Consensus 370 ~L~~~L~L~~~~l~~---~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~ 446 (535)
+|+ .|.++.+.+.. ..++. .+..+++|++|+++.++ ..+ .++..+...+-+..+.|+.
T Consensus 371 ~L~-~L~L~~n~i~~~~~~~l~~-----~l~~~~~L~~L~l~~N~-----------i~~--~~~~~l~~~l~~~~~~L~~ 431 (461)
T 1z7x_W 371 VLR-VLWLADCDVSDSSCSSLAA-----TLLANHSLRELDLSNNC-----------LGD--AGILQLVESVRQPGCLLEQ 431 (461)
T ss_dssp CCC-EEECTTSCCCHHHHHHHHH-----HHHHCCCCCEEECCSSS-----------CCH--HHHHHHHHHHTSTTCCCCE
T ss_pred ceE-EEECCCCCCChhhHHHHHH-----HHHhCCCccEEECCCCC-----------CCH--HHHHHHHHHhccCCcchhh
Confidence 899 88888655552 14555 45567899999997432 111 2444444434343457888
Q ss_pred EEEee
Q 009416 447 VSIEH 451 (535)
Q Consensus 447 L~l~~ 451 (535)
|.+..
T Consensus 432 L~~~~ 436 (461)
T 1z7x_W 432 LVLYD 436 (461)
T ss_dssp EECTT
T ss_pred eeecc
Confidence 88763
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=144.90 Aligned_cols=250 Identities=14% Similarity=0.063 Sum_probs=132.2
Q ss_pred cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
+++++|++..+... .+|. .+..+++|++|++++|.+... ..+..+++|++|++++|.++.- ....+..+++|++
T Consensus 52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence 36666666654432 3443 455667777777777665322 3456667777777777666321 1223556677777
Q ss_pred EEEeecCCCc--e-eeeCCCCCccEEEEeecCCccEEee----cCCcccEEEEeeec-ccCeEEecCcccccceeEeecc
Q 009416 191 LEIRSCEGLE--S-LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFL 262 (535)
Q Consensus 191 L~L~~c~~l~--~-~~~~~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~ 262 (535)
|++++|.... . -.+..+++|++|++++|..+..+.. .+++|+.|+++++. ....+..+..+++|++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 7777664321 1 1244556666666666644444321 34555556555554 2212234455555555555555
Q ss_pred CCChHHHHHhcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccce
Q 009416 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSE 342 (535)
Q Consensus 263 ~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~ 342 (535)
.+... ...++..+++|+.|+++++.-. .++. ..+ ......+.++.
T Consensus 209 ~l~~~-~~~~~~~~~~L~~L~L~~n~l~-~~~~----------------~~l-----------------~~~~~~~~l~~ 253 (353)
T 2z80_A 209 QHILL-LEIFVDVTSSVECLELRDTDLD-TFHF----------------SEL-----------------STGETNSLIKK 253 (353)
T ss_dssp CSTTH-HHHHHHHTTTEEEEEEESCBCT-TCCC----------------C-----------------------CCCCCCE
T ss_pred ccccc-hhhhhhhcccccEEECCCCccc-cccc----------------ccc-----------------ccccccchhhc
Confidence 54321 2222333455555555553211 0000 000 01122344566
Q ss_pred eEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416 343 TSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT 411 (535)
Q Consensus 343 L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~ 411 (535)
+++............+++.+. .+++|+ .|.++.+.++ .+|+. .+..+++|++|+++..+
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~---~l~~L~-~L~Ls~N~l~--~i~~~----~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLN---QISGLL-ELEFSRNQLK--SVPDG----IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHH---TCTTCC-EEECCSSCCC--CCCTT----TTTTCTTCCEEECCSSC
T ss_pred cccccccccCcchhhhHHHHh---cccCCC-EEECCCCCCC--ccCHH----HHhcCCCCCEEEeeCCC
Confidence 666433222211234566777 899999 8888877776 67762 23678899999997543
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=1.3e-14 Score=143.36 Aligned_cols=280 Identities=13% Similarity=0.077 Sum_probs=142.8
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
+++.+++.... ...+|..+. ++|++|+|++|.+... ..+..+++|++|++++|.++... +..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~--l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLG--LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSC--CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEE
T ss_pred CCeEEEecCCC--ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEE
Confidence 45555443322 234554332 5677777777766332 24566777777777766653211 12245666777777
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChH-HHH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE-WLC 270 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~-~l~ 270 (535)
+++|.. ..+.....++|++|+ ++++. .......+.++++|+.|+++++.+... ...
T Consensus 107 Ls~n~l-~~l~~~~~~~L~~L~---------------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 107 LSKNQL-KELPEKMPKTLQELR---------------------VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp CCSSCC-SBCCSSCCTTCCEEE---------------------CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CCCCcC-CccChhhcccccEEE---------------------CCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 766642 222111124444444 44443 111122355666666666666665431 112
Q ss_pred HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----hhcccCccc
Q 009416 271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSL 340 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----~~~~~l~~L 340 (535)
..+.++++|+.|+++++. ++.++. ..++|+.|+++++. +..+ ....++|+.|.++++.. ..+.++++|
T Consensus 165 ~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp TGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 224556677777776643 223332 22566666666553 2111 12345666666666544 246677778
Q ss_pred ceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccC--CCCcccceeeEEEEeecCCcccc
Q 009416 341 SETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQ--SPPLTSVKKLNYSVRTDSWDFSV 418 (535)
Q Consensus 341 ~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~ 418 (535)
+.|+++.+... .++..+. .+++|+ .|.++.+.++ .++...+... ....++|+.|++...+
T Consensus 243 ~~L~L~~N~l~-----~lp~~l~---~l~~L~-~L~l~~N~i~--~~~~~~f~~~~~~~~~~~l~~l~l~~N~------- 304 (330)
T 1xku_A 243 RELHLNNNKLV-----KVPGGLA---DHKYIQ-VVYLHNNNIS--AIGSNDFCPPGYNTKKASYSGVSLFSNP------- 304 (330)
T ss_dssp CEEECCSSCCS-----SCCTTTT---TCSSCC-EEECCSSCCC--CCCTTSSSCSSCCTTSCCCSEEECCSSS-------
T ss_pred CEEECCCCcCc-----cCChhhc---cCCCcC-EEECCCCcCC--ccChhhcCCcccccccccccceEeecCc-------
Confidence 88877655222 2233345 677888 7777755555 4443333211 1224567777765322
Q ss_pred chhcccccccchhHHhhhhhccCcccceEEEe
Q 009416 419 ANVRARSSRFSIANVLDGLLWTSPHAEMVSIE 450 (535)
Q Consensus 419 ~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~ 450 (535)
+ ....+....|..+++++.+.+.
T Consensus 305 -------~--~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 305 -------V--QYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp -------S--CGGGSCGGGGTTCCCGGGEEC-
T ss_pred -------c--cccccCccccccccceeEEEec
Confidence 0 1011223356666777777765
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.53 E-value=4.5e-14 Score=150.41 Aligned_cols=254 Identities=15% Similarity=0.043 Sum_probs=180.3
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.+++.|++..+... .+|..++ ++|++|+|++|.+...+. .+++|++|+|++|.++. ++ ..+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEE
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEEC
Confidence 46888888766543 7777665 799999999998864333 67899999999998742 22 26789999999
Q ss_pred eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI 273 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~ 273 (535)
++|... .+.. .+++|+.|++++| .+..++...++|++|++++|....++ ...++|+.|++++|.++.- .
T Consensus 109 s~N~l~-~l~~-~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~l-----~ 177 (622)
T 3g06_A 109 FSNPLT-HLPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSL-----P 177 (622)
T ss_dssp CSCCCC-CCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCC-----C
T ss_pred cCCcCC-CCCC-CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCCC-----c
Confidence 888542 2322 4578999999887 34444445689999999988722222 2357889999998887752 2
Q ss_pred CCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-hhcccCcccceeEEEEecccc
Q 009416 274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFSSHLM 352 (535)
Q Consensus 274 ~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-~~~~~l~~L~~L~l~~~~~~~ 352 (535)
..+++|+.|+++++. ++.++...++|+.|.+.++. +..+....++|+.|.++++.. ..-..+++|+.|+++.+....
T Consensus 178 ~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 178 MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 255 (622)
T ss_dssp CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc
Confidence 557899999999864 45566666789999888763 445555567899999988876 211566889999887653222
Q ss_pred hhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEe
Q 009416 353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR 410 (535)
Q Consensus 353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~ 410 (535)
++ . .+++|+ .|.++.|.++ .+|+ .+..+++|+.|+|+.+
T Consensus 256 -----lp---~---~~~~L~-~L~Ls~N~L~--~lp~-----~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 256 -----LP---M---LPSGLL-SLSVYRNQLT--RLPE-----SLIHLSSETTVNLEGN 294 (622)
T ss_dssp -----CC---C---CCTTCC-EEECCSSCCC--SCCG-----GGGGSCTTCEEECCSC
T ss_pred -----CC---c---ccccCc-EEeCCCCCCC--cCCH-----HHhhccccCEEEecCC
Confidence 11 2 367899 8888877776 6676 5667889999999743
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=153.77 Aligned_cols=246 Identities=14% Similarity=0.109 Sum_probs=132.1
Q ss_pred CCccccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCC
Q 009416 131 LPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSN 209 (535)
Q Consensus 131 lp~~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~ 209 (535)
.|..+..+++|++|++++|.+. .+..+..+ +|++|+++++.+.. ++ ...+++|++|++.+|..........+++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCC
Confidence 3444455566666666666553 22334444 66666666665531 11 1345666666666665443333344566
Q ss_pred ccEEEEeecCCccEE---e---ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEE
Q 009416 210 LKEIILVNTSDIKRV---E---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (535)
Q Consensus 210 L~~L~l~~c~~l~~~---~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 283 (535)
|+.|++++|.- ... . ..+++|++|+++++.....+..+..+++|+.|+++++.+.+......+.++++|+.|+
T Consensus 349 L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 349 LEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCEEeCcCCcc-CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 66666665521 111 1 1456666666666552222333555666666666655544332222345556666666
Q ss_pred eecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHHH
Q 009416 284 MTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVE 360 (535)
Q Consensus 284 L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 360 (535)
+++|...+..+. ..++|+.|++.+|.-... ..+..+.++++|+.|+++.+.... ..+.
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~p~~~~~l~~L~~L~l~~n~l~~----~~~~ 488 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------FLPDIFTELRNLTFLDLSQCQLEQ----LSPT 488 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---------------EECSCCTTCTTCCEEECTTSCCCE----ECTT
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccc---------------cchhhhhcccCCCEEECCCCcccc----CChh
Confidence 665543222221 233445555444421100 001346678888888886553333 2244
Q ss_pred HHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416 361 YFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT 411 (535)
Q Consensus 361 ~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~ 411 (535)
.+. .+++|+ .|.++.+.+. ...+. .+..+++|++|++...+
T Consensus 489 ~~~---~l~~L~-~L~l~~n~l~-~~~~~-----~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 489 AFN---SLSSLQ-VLNMASNQLK-SVPDG-----IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTT---TCTTCC-EEECCSSCCS-CCCTT-----TTTTCTTCCEEECCSSC
T ss_pred hhh---cccCCC-EEeCCCCcCC-CCCHH-----HhhcccCCcEEEecCCc
Confidence 556 789999 8888877666 33333 56678899999998655
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=7.1e-14 Score=144.11 Aligned_cols=235 Identities=17% Similarity=0.107 Sum_probs=133.3
Q ss_pred CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec
Q 009416 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c 218 (535)
++|++|++++|.+...+.++.+++|++|++++|.++. ++ ...++|++|++++|...+--.+..+++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4666666666665433456666667777776665532 11 123466777776664332114555677777777766
Q ss_pred CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcccccCCC
Q 009416 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSP 298 (535)
Q Consensus 219 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~ 298 (535)
. +..++...++|+.|+++++....++ .++.+++|+.|+++++.+.+ +....++|+.|+++++. ++.++...+
T Consensus 206 ~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~-l~~l~~~~~ 277 (454)
T 1jl5_A 206 S-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNY-LTDLPELPQ 277 (454)
T ss_dssp C-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSC-CSCCCCCCT
T ss_pred c-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCc-ccccCcccC
Confidence 2 2222223357777777776622333 36677777777777776654 11234677777777654 333554556
Q ss_pred CCceEEeccCcccccccccCCceeeEEEcCcchhhcccC-cccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEE
Q 009416 299 CLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNA-LSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNL 377 (535)
Q Consensus 299 ~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L 377 (535)
+|+.|+++++. +..+....++|+.|.++++....+... ++|+.|+++.+.... +.. .+++|+ .|.+
T Consensus 278 ~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~--------lp~---~~~~L~-~L~L 344 (454)
T 1jl5_A 278 SLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--------LPA---LPPRLE-RLIA 344 (454)
T ss_dssp TCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC--------CCC---CCTTCC-EEEC
T ss_pred cCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc--------ccc---cCCcCC-EEEC
Confidence 77777776653 333322235777777777665333344 367777775442211 112 356777 7777
Q ss_pred EeeccccccccccccccCCCCcccceeeEEEE
Q 009416 378 QCREGENVIVPQELRQIQSPPLTSVKKLNYSV 409 (535)
Q Consensus 378 ~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~ 409 (535)
+.+.++ .+|. .+++|++|+++.
T Consensus 345 ~~N~l~--~lp~--------~l~~L~~L~L~~ 366 (454)
T 1jl5_A 345 SFNHLA--EVPE--------LPQNLKQLHVEY 366 (454)
T ss_dssp CSSCCS--CCCC--------CCTTCCEEECCS
T ss_pred CCCccc--cccc--------hhhhccEEECCC
Confidence 655555 3443 245777777764
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.49 E-value=1.6e-14 Score=142.99 Aligned_cols=280 Identities=14% Similarity=0.084 Sum_probs=139.3
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.++.+++..+. ...+|..+. ++|++|++++|.+... ..+..+++|++|++++|.++... +..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~--l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLG--LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSC--CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEE
T ss_pred cCCEEECCCCC--ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEE
Confidence 35555544332 224554432 5666666666655221 34556666666666666553211 12245566666666
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeE-EecCcccccceeEeeccCCChH-HHH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDE-WLC 270 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~-~l~ 270 (535)
+++|... .+.....++|++|++ +++....++ ..+.++++|+.|+++++.+... ...
T Consensus 109 L~~n~l~-~l~~~~~~~L~~L~l---------------------~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLPSSLVELRI---------------------HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp CCSSCCC-SCCSSCCTTCCEEEC---------------------CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred CCCCcCC-ccCccccccCCEEEC---------------------CCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 6665422 221111144455544 444411111 2245555666666665555421 111
Q ss_pred HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----hhcccCccc
Q 009416 271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSL 340 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----~~~~~l~~L 340 (535)
..+..+ +|+.|+++++. ++.++. ..++|+.|+++++.- ..+ ....++|+.|.++++.. ..+.++++|
T Consensus 167 ~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred ccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 112333 55666665543 222332 224556665554421 111 12345666666666544 356778889
Q ss_pred ceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCC--CCcccceeeEEEEeecCCcccc
Q 009416 341 SETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQS--PPLTSVKKLNYSVRTDSWDFSV 418 (535)
Q Consensus 341 ~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~ 418 (535)
+.|+++.+... .++..+. .+++|+ .|.++.+.++ .++...+.... ..+.+|+.|++...+
T Consensus 244 ~~L~L~~N~l~-----~lp~~l~---~l~~L~-~L~l~~N~l~--~~~~~~~~~~~~~~~~~~l~~L~l~~N~------- 305 (332)
T 2ft3_A 244 RELHLDNNKLS-----RVPAGLP---DLKLLQ-VVYLHTNNIT--KVGVNDFCPVGFGVKRAYYNGISLFNNP------- 305 (332)
T ss_dssp CEEECCSSCCC-----BCCTTGG---GCTTCC-EEECCSSCCC--BCCTTSSSCSSCCSSSCCBSEEECCSSS-------
T ss_pred CEEECCCCcCe-----ecChhhh---cCccCC-EEECCCCCCC--ccChhHccccccccccccccceEeecCc-------
Confidence 98888655322 2333456 788999 8888766665 44443332111 124678888886333
Q ss_pred chhcccccccchhHHhhhhhccCcccceEEEee
Q 009416 419 ANVRARSSRFSIANVLDGLLWTSPHAEMVSIEH 451 (535)
Q Consensus 419 ~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~ 451 (535)
+ ....+....+..+++|+.+.+..
T Consensus 306 -------~--~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 306 -------V--PYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp -------S--CGGGSCGGGGTTBCCSTTEEC--
T ss_pred -------c--cccccCcccccccchhhhhhccc
Confidence 0 11123334677788999888863
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=1e-14 Score=142.59 Aligned_cols=219 Identities=19% Similarity=0.187 Sum_probs=145.8
Q ss_pred CCccCCccccCCCceeEEEEeCccccCC-C-CcccCcccceeEeeeEeeChhH-HHHHHhCCCcccEEEEeecCCCcee-
Q 009416 127 ERRNLPEIIFYVESLHVLELSYCKLQQP-S-ENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLESL- 202 (535)
Q Consensus 127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~-l~~~~~~~p~Le~L~L~~c~~l~~~- 202 (535)
....+|..+. ++|++|+|++|.+... . .+..+++|++|++++|.++... ....+..+++|++|++++|... .+
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~ 94 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 94 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEE
T ss_pred CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cCh
Confidence 3446665443 6889999999887433 2 3578899999999888774211 1112446889999999888643 22
Q ss_pred -eeCCCCCccEEEEeec--CCccE--EeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCC
Q 009416 203 -DLVNLSNLKEIILVNT--SDIKR--VEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKL 276 (535)
Q Consensus 203 -~~~~l~~L~~L~l~~c--~~l~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~ 276 (535)
.+..+++|++|++++| ..+.. ....+++|+.|+++++. ....+..+..+++|+.|+++++.+.+......+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 3667788999988887 22221 12256888888888876 333334567788899999988877664444456778
Q ss_pred CCccEEEeecCCCCccccc---CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----hhcccCc-cccee
Q 009416 277 PLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNAL-SLSET 343 (535)
Q Consensus 277 ~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----~~~~~l~-~L~~L 343 (535)
++|+.|+++++...+..+. ..++|+.|+++++.- ..+ ....++|+.|+++++.. ..+..++ +|+.|
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 8899999988754332222 346888888877642 222 12457888888888765 3455664 79999
Q ss_pred EEEEec
Q 009416 344 SLCFSS 349 (535)
Q Consensus 344 ~l~~~~ 349 (535)
+++.+.
T Consensus 254 ~L~~N~ 259 (306)
T 2z66_A 254 NLTQND 259 (306)
T ss_dssp ECTTCC
T ss_pred EccCCC
Confidence 886553
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=4.3e-14 Score=147.15 Aligned_cols=223 Identities=12% Similarity=0.079 Sum_probs=110.3
Q ss_pred ceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEee
Q 009416 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN 217 (535)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~ 217 (535)
+|++|+|++|.+... ..+..+++|++|+|++|.++... + +..+++|++|+|++|. +..+. ..++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECcC
Confidence 444444444444221 23344444444444444432110 0 3344444444444442 11111 124455555544
Q ss_pred cCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc-
Q 009416 218 TSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI- 295 (535)
Q Consensus 218 c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~- 295 (535)
|.--......+++|+.|+++++. ....+..++++++|+.|++++|.+++..+..+...+++|+.|+++++... .++.
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~ 187 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECC
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-ccccc
Confidence 42111111234556666666555 33234455666777777777776666544444445677777777765422 2222
Q ss_pred -CCCCCceEEeccCcccccc---cccCCceeeEEEcCcch----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhc
Q 009416 296 -SSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAM 367 (535)
Q Consensus 296 -~~~~L~~L~l~~c~~L~~l---~~~~p~L~~L~~~g~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~ 367 (535)
..++|+.|+++++. +..+ ....++|+.|+++++.. ..+..+++|+.++++.+.... ..++.++. .
T Consensus 188 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c---~~~~~~~~---~ 260 (487)
T 3oja_A 188 VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC---GTLRDFFS---K 260 (487)
T ss_dssp CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH---HHHHHHHT---T
T ss_pred ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC---cchHHHHH---h
Confidence 24566666666543 2122 12345666777666554 345667788888776554331 14556666 6
Q ss_pred ccccceeEEE
Q 009416 368 FQKFSKVLNL 377 (535)
Q Consensus 368 l~~L~~~L~L 377 (535)
++.++ .|.+
T Consensus 261 l~~L~-~l~~ 269 (487)
T 3oja_A 261 NQRVQ-TVAK 269 (487)
T ss_dssp CHHHH-HHHH
T ss_pred CCCCc-EEec
Confidence 77777 4443
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.44 E-value=4.5e-14 Score=138.72 Aligned_cols=231 Identities=17% Similarity=0.109 Sum_probs=123.4
Q ss_pred cCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
+++++|++..+... .++ ..+..+++|++|+|++|.+...+.+..+++|++|++++|.++. +..+++|++|+
T Consensus 34 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEE
T ss_pred CCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEE
Confidence 46777777765433 233 4566677788888877776433336677777777777776632 22346777777
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ 271 (535)
+++|.. ..+....+++|+.|++++| . ....+..+..+++|+.|++++|.+.+..+..
T Consensus 106 l~~n~l-~~~~~~~~~~L~~L~l~~N---------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 106 AANNNI-SRVSCSRGQGKKNIYLANN---------------------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp CCSSCC-SEEEECCCSSCEEEECCSS---------------------CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCCCcc-CCcCccccCCCCEEECCCC---------------------CCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 777643 3333333455555555555 3 1111223444555555555555554433333
Q ss_pred hcCCCCCccEEEeecCCCCccccc--CCCCCceEEeccCcccccc---cccCCceeeEEEcCcch----hhcccCcccce
Q 009416 272 GISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI----SFSSNALSLSE 342 (535)
Q Consensus 272 l~~~~~~L~~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~l---~~~~p~L~~L~~~g~~~----~~~~~l~~L~~ 342 (535)
+...+++|+.|+++++.. +.++. ..++|+.|+++++. +..+ ....++|+.|.++++.. ..+..+++|+.
T Consensus 164 ~~~~l~~L~~L~L~~N~l-~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFI-YDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GGGGTTTCCEEECTTSCC-CEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred HhhccCcCCEEECCCCcC-cccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 333455555555555432 11111 23455555554432 1111 11334555666555543 33556778888
Q ss_pred eEEEEecccchhhHhHHHHHhhhhcccccceeEEEE-eeccc
Q 009416 343 TSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ-CREGE 383 (535)
Q Consensus 343 L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~-~~~l~ 383 (535)
++++.+.... ..++.++. .+++|+ .|.+. ++.++
T Consensus 242 L~l~~N~~~~---~~~~~~~~---~~~~L~-~l~l~~~~~l~ 276 (317)
T 3o53_A 242 FDLRGNGFHC---GTLRDFFS---KNQRVQ-TVAKQTVKKLT 276 (317)
T ss_dssp EECTTCCCBH---HHHHHHHH---TCHHHH-HHHHHHHHHHH
T ss_pred EEccCCCccC---cCHHHHHh---ccccce-EEECCCchhcc
Confidence 8776554331 15566666 777777 55555 33343
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=3.8e-14 Score=138.90 Aligned_cols=194 Identities=11% Similarity=0.046 Sum_probs=144.2
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
.++++.|++..+..-...+|..+..+++|++|+|++|.+. .+..+..+++|++|++++|.+... ++..+..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence 4689999998522233468888999999999999999884 446688999999999999988432 2334678999999
Q ss_pred EEEeecCCCcee--eeCCCC-CccEEEEeecCCccEEe--ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCC
Q 009416 191 LEIRSCEGLESL--DLVNLS-NLKEIILVNTSDIKRVE--IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 191 L~L~~c~~l~~~--~~~~l~-~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
|++++|...+.+ .+..++ +|+.|++++|.--...+ +...+|+.|+++++. ....+..+..+++|+.|+++++.+
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 999999764343 456666 99999999882211111 222239999999987 444556788999999999999988
Q ss_pred ChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCc
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCD 309 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~ 309 (535)
++.... +..+++|+.|+++++...+.++. ..++|+.|+++++.
T Consensus 234 ~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 234 AFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred eeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 754333 67789999999999865544443 34677777777653
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=7e-13 Score=141.20 Aligned_cols=236 Identities=17% Similarity=0.078 Sum_probs=161.6
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++.|++..+... .+|. .+++|++|+|++|.+...+. .+++|++|++++|.++. ++ ..+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~---~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LP---ALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CC---CCCTTCCEEEC
T ss_pred CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CC---CCCCCcCEEEC
Confidence 58999999887543 5776 46899999999998854333 78999999999998743 11 15788999999
Q ss_pred eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI 273 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~ 273 (535)
++|.. ..+.. .+++|++|++++| .+..++...++|+.|.+.++....++ ..+++|+.|++++|.++. +.
T Consensus 129 ~~N~l-~~lp~-~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-----l~ 197 (622)
T 3g06_A 129 FGNQL-TSLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-----LP 197 (622)
T ss_dssp CSSCC-SCCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-----CC
T ss_pred CCCCC-CcCCC-CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-----CC
Confidence 88853 33322 2488999999888 33333335678888888887733333 456788888888887764 12
Q ss_pred CCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-hhcccCcccceeEEEEecccc
Q 009416 274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFSSHLM 352 (535)
Q Consensus 274 ~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-~~~~~l~~L~~L~l~~~~~~~ 352 (535)
...++|+.|++.++. ++.++...++|+.|+++++ ++..+....++|+.|.++++.. ..-..+++|+.|+++.+...
T Consensus 198 ~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 198 TLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-
T ss_pred CccchhhEEECcCCc-ccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-
Confidence 345788888888753 4455555677888888766 4555555567888888887765 11115667888887655222
Q ss_pred hhhHhHHHHHhhhhcccccceeEEEEeeccc
Q 009416 353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGE 383 (535)
Q Consensus 353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~ 383 (535)
.++..+. ++++|+ .|.++.|.+.
T Consensus 275 ----~lp~~l~---~l~~L~-~L~L~~N~l~ 297 (622)
T 3g06_A 275 ----RLPESLI---HLSSET-TVNLEGNPLS 297 (622)
T ss_dssp ----SCCGGGG---GSCTTC-EEECCSCCCC
T ss_pred ----cCCHHHh---hccccC-EEEecCCCCC
Confidence 2334455 788888 7777766665
No 57
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=2.8e-14 Score=141.25 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=111.7
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeE-eeChhHHHHHHhCCCccc
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREV-CADDQAIASLISGCPLIE 189 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~-~~~~~~l~~~~~~~p~Le 189 (535)
.+++++|++..+......+|..+..+++|++|+|++|.+.. +..+..+++|++|++++| .+++..+...+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 46899999988765444477778889999999999998742 245677999999999999 567777888889999999
Q ss_pred EEEEeecCCCcee----eeCCCC-CccEEEEeecC-Ccc-----EEeecCCcccEEEEeeec--ccCeEEecCcccccce
Q 009416 190 YLEIRSCEGLESL----DLVNLS-NLKEIILVNTS-DIK-----RVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKC 256 (535)
Q Consensus 190 ~L~L~~c~~l~~~----~~~~l~-~L~~L~l~~c~-~l~-----~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~ 256 (535)
+|++++|..+... .+..++ +|++|++++|. .+. .....+++|++|+++++. .......+..+++|+.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 9999999555432 244567 88888887773 221 111144555555555544 1112223444455555
Q ss_pred eEeecc-CCChHHHHHhcCCCCCccEEEeecC
Q 009416 257 LKFDFL-PIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 257 L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
|++++| .+.+..+.. +.++++|+.|++.+|
T Consensus 252 L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence 555544 233332222 334555555555544
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.40 E-value=1.8e-13 Score=141.41 Aligned_cols=225 Identities=18% Similarity=0.140 Sum_probs=125.2
Q ss_pred CccCCccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---
Q 009416 128 RRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--- 202 (535)
Q Consensus 128 ~~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--- 202 (535)
...+|..+. +++++|+|++|.+.. +..+.++++|++|+|++|.++... ...+.++++|++|+|++|... .+
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~ 141 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLT-VIPSG 141 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCS-BCCTT
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCC-ccChh
Confidence 335565432 577778887776632 245667777777777777663221 122456777777777776432 21
Q ss_pred eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCccE
Q 009416 203 DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (535)
Q Consensus 203 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 281 (535)
.+..+++|++|++++| ....+ ...+..+++|+.|+++++..........+.++++|+.
T Consensus 142 ~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNN---------------------PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp TSSSCTTCCEEECCSC---------------------CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred hhcccCCCCEEECCCC---------------------CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 1233344444444333 20000 1124455556666665533322222223445566666
Q ss_pred EEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhH
Q 009416 282 LSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIE 356 (535)
Q Consensus 282 L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~ 356 (535)
|+++++.. +.++. ....++|+.|+++++.. ..+.++++|+.|++..+....
T Consensus 201 L~L~~n~l-~~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---- 256 (452)
T 3zyi_A 201 LNLGMCNI-KDMPN-------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL---- 256 (452)
T ss_dssp EECTTSCC-SSCCC-------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE----
T ss_pred EECCCCcc-ccccc-------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce----
Confidence 66655421 11111 11334666666666554 467889999999996553333
Q ss_pred hHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416 357 WVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT 411 (535)
Q Consensus 357 ~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~ 411 (535)
..+..+. ++++|+ .|.|+.|.++ .+|+. .+..+++|++|+|...+
T Consensus 257 ~~~~~~~---~l~~L~-~L~L~~N~l~--~~~~~----~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 IERNAFD---GLASLV-ELNLAHNNLS--SLPHD----LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTTTT---TCTTCC-EEECCSSCCS--CCCTT----SSTTCTTCCEEECCSSC
T ss_pred ECHHHhc---CCCCCC-EEECCCCcCC--ccChH----HhccccCCCEEEccCCC
Confidence 2234456 789999 8888877776 45542 45578899999997544
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=9.2e-13 Score=130.06 Aligned_cols=248 Identities=17% Similarity=0.119 Sum_probs=101.9
Q ss_pred CceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 115 EVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
+++.|++..+... .+|. .+..+++|++|+|++|.+.. +..+..+++|++|++++|.++. ++. ..+++|++|
T Consensus 53 ~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~L 126 (330)
T 1xku_A 53 DTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQEL 126 (330)
T ss_dssp TCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCEE
T ss_pred CCeEEECCCCcCC--EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccEE
Confidence 4455554443321 2332 34445555555555554422 1334455555555555554421 110 112455555
Q ss_pred EEeecCCCcee--eeCCCCCccEEEEeecCCc----cEEe-ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDI----KRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l----~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
++++|...... .+..+++|+.|++++|.-- .... ..+++|+.|+++++....++..+ .++|+.|+++++.+
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l 204 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKI 204 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCcC
Confidence 55554322111 2334455555555544110 0000 13445555555544411111111 14555555555544
Q ss_pred ChHHHHHhcCCCCCccEEEeecCCCCcccc---cCCCCCceEEeccCccccccc---ccCCceeeEEEcCcch-----hh
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SF 333 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~-----~~ 333 (535)
.+..... +..+++|+.|+++++...+..+ ...++|+.|+++++. +..+. ...++|+.|.++++.. ..
T Consensus 205 ~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 205 TKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhh
Confidence 4322222 3445555555555543211111 022455555555442 22221 1334555555555443 11
Q ss_pred c------ccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEE
Q 009416 334 S------SNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ 378 (535)
Q Consensus 334 ~------~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~ 378 (535)
+ ...++|+.+++..++... ....+..+. .+++++ .+.++
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~--~~i~~~~f~---~~~~l~-~l~L~ 327 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQY--WEIQPSTFR---CVYVRA-AVQLG 327 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCG--GGSCGGGGT---TCCCGG-GEEC-
T ss_pred cCCcccccccccccceEeecCcccc--cccCccccc---ccccee-EEEec
Confidence 1 123556666665443221 011123334 566677 66554
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=140.55 Aligned_cols=226 Identities=19% Similarity=0.213 Sum_probs=132.5
Q ss_pred CCccCCccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416 127 ERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (535)
Q Consensus 127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-- 202 (535)
....+|..+. ++++.|+|++|.+.. +..+.++++|++|+|++|.+..-.. ..+.++++|++|+|++|... .+
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~-~~~~ 129 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLT-TIPN 129 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCS-SCCT
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCC-eeCH
Confidence 3445666543 678888888887732 2556778888888888876632211 23567778888888777432 22
Q ss_pred -eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCcc
Q 009416 203 -DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE 280 (535)
Q Consensus 203 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~ 280 (535)
.+..+++|++|++++| ....+ ...+..+++|+.|+++++..........+.++++|+
T Consensus 130 ~~~~~l~~L~~L~L~~N---------------------~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNN---------------------PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp TTSCSCSSCCEEECCSC---------------------CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred hHhhccccCceeeCCCC---------------------cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 2333444444444433 21100 123556667777777664433333333355667777
Q ss_pred EEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhh
Q 009416 281 YLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNI 355 (535)
Q Consensus 281 ~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~ 355 (535)
.|+++++. ++.++. ....++|+.|+++++.. ..+.++++|+.|++..+....
T Consensus 189 ~L~L~~n~-l~~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 245 (440)
T 3zyj_A 189 YLNLAMCN-LREIPN-------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV--- 245 (440)
T ss_dssp EEECTTSC-CSSCCC-------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE---
T ss_pred eecCCCCc-Cccccc-------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE---
Confidence 77777653 222221 01234555566655543 467789999999996553332
Q ss_pred HhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416 356 EWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT 411 (535)
Q Consensus 356 ~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~ 411 (535)
..+..+. ++++|+ .|.|+.|.++ .+|+. .+..+++|++|+|...+
T Consensus 246 -~~~~~~~---~l~~L~-~L~L~~N~l~--~~~~~----~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 -IERNAFD---NLQSLV-EINLAHNNLT--LLPHD----LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -ECTTSST---TCTTCC-EEECTTSCCC--CCCTT----TTSSCTTCCEEECCSSC
T ss_pred -EChhhhc---CCCCCC-EEECCCCCCC--ccChh----HhccccCCCEEEcCCCC
Confidence 2234445 789999 8888877776 44442 45678899999997544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=1.1e-12 Score=135.35 Aligned_cols=214 Identities=16% Similarity=0.058 Sum_probs=152.1
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
++++.|++..+.... -.|..+..+++|++|+|++|.+... ..+..+++|++|+|++|.++.- ....+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence 589999998765432 2345677899999999999988432 5678899999999999987432 12336789999999
Q ss_pred EEeecCCCcee---eeCCCCCccEEEEeecCCccEEee----cCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416 192 EIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 192 ~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
++++|... .+ .+..+++|+.|++++|..+..+.. .+++|+.|+++++....+ ..+..+++|+.|+|++|.+
T Consensus 153 ~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcC
Confidence 99999743 33 456789999999999877777753 678999999998873322 3577888999999999888
Q ss_pred ChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccc
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS 341 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~ 341 (535)
.+..... +.++++|+.|++.++......+. ..++|+.|+++++ ++..+.. ..+.++++|+
T Consensus 231 ~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---------------~~~~~l~~L~ 293 (452)
T 3zyi_A 231 PEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH---------------DLFTPLRYLV 293 (452)
T ss_dssp SEECGGG-GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT---------------TSSTTCTTCC
T ss_pred cccCccc-ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh---------------HHhccccCCC
Confidence 7654433 67889999999988653222221 2345666666554 2222211 2345677888
Q ss_pred eeEEEEe
Q 009416 342 ETSLCFS 348 (535)
Q Consensus 342 ~L~l~~~ 348 (535)
.|+++.+
T Consensus 294 ~L~L~~N 300 (452)
T 3zyi_A 294 ELHLHHN 300 (452)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 8888655
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.38 E-value=1.2e-13 Score=135.53 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=142.9
Q ss_pred cCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEee
Q 009416 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQ 238 (535)
Q Consensus 159 ~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~ 238 (535)
.+++|++|++++|.++... +..+..+++|++|++++|...+...+..+++|++|++++| .+..+. ..++|+.|++++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~~~L~~L~l~~ 108 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELL-VGPSIETLHAAN 108 (317)
T ss_dssp TGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS-EEEEEE-ECTTCCEEECCS
T ss_pred cCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC-cccccc-CCCCcCEEECCC
Confidence 4556777777776664322 2235667777777777776544445666777777777766 233332 347788888877
Q ss_pred ecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCcccccc
Q 009416 239 TYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQV 314 (535)
Q Consensus 239 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l 314 (535)
+..... ....+++|+.|+++++.+....... +..+++|+.|+++++......+. ..++|+.|+++++. +..+
T Consensus 109 n~l~~~--~~~~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 109 NNISRV--SCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp SCCSEE--EECCCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CccCCc--CccccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence 762221 2344788999999988887643322 45678889998888643221111 23455555555442 1111
Q ss_pred cccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecccccccccccccc
Q 009416 315 EIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQI 394 (535)
Q Consensus 315 ~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~ 394 (535)
.....+++|+.|+++.+.... ++..+. .+++|+ .|.++.+.++ .+|+
T Consensus 185 -----------------~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~---~l~~L~-~L~L~~N~l~--~l~~----- 231 (317)
T 3o53_A 185 -----------------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQ---SAAGVT-WISLRNNKLV--LIEK----- 231 (317)
T ss_dssp -----------------ECCCCCTTCCEEECCSSCCCE-----ECGGGG---GGTTCS-EEECTTSCCC--EECT-----
T ss_pred -----------------ccccccccCCEEECCCCcCCc-----chhhhc---ccCccc-EEECcCCccc--chhh-----
Confidence 122247778888886553332 122245 789999 8888877766 5776
Q ss_pred CCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416 395 QSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE 450 (535)
Q Consensus 395 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~ 450 (535)
.+..+++|++|+++..+ + .- ..+..++..+|+|+.+.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~--------------~--~~-~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNG--------------F--HC-GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCCTTCCEEECTTCC--------------C--BH-HHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCC--------------c--cC-cCHHHHHhccccceEEECC
Confidence 66778899999996332 1 00 1222266667888888776
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=2.2e-12 Score=132.97 Aligned_cols=257 Identities=14% Similarity=0.108 Sum_probs=169.8
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
+++++|++..+... .+| .+..+++|++|++++|.+...+. ..++|++|++++|.+.. ++. ++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEEC
Confidence 57888888876544 477 58889999999999998854322 34699999999998854 232 678999999999
Q ss_pred eecCCCceeeeCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ 271 (535)
++|...+ +. ...++|+.|++++| ..+.. ...+++|+.|+++++.-..++. ..++|+.|+++++.+.+
T Consensus 203 ~~N~l~~-l~-~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~----- 271 (454)
T 1jl5_A 203 DNNSLKK-LP-DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD----- 271 (454)
T ss_dssp CSSCCSS-CC-CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-----
T ss_pred CCCcCCc-CC-CCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-----
Confidence 9996433 21 11268999999998 22322 1278899999999887222221 34789999999988775
Q ss_pred hcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhc-ccCcccceeEEEEecc
Q 009416 272 GISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFS-SNALSLSETSLCFSSH 350 (535)
Q Consensus 272 l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~-~~l~~L~~L~l~~~~~ 350 (535)
+....++|+.|+++++. ++.++...++|+.|+++++. +..+....++|+.|.++++....+ ..+++|+.|+++.+..
T Consensus 272 l~~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 272 LPELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHL 349 (454)
T ss_dssp CCCCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred cCcccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCcc
Confidence 12345789999999865 44444445789999998764 333332235899999988766212 2357899998865532
Q ss_pred cchhhHhHHHHHhhhhcccccceeEEEEeeccccc--cccccccccCCCCc-------------ccceeeEEEE
Q 009416 351 LMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENV--IVPQELRQIQSPPL-------------TSVKKLNYSV 409 (535)
Q Consensus 351 ~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~--~~p~~~~~~~~~~l-------------~~L~~L~l~~ 409 (535)
.. ++. .+++|+ .|.++.+.+. + .+|. .+..+ ++|++|+++.
T Consensus 350 ~~-----lp~------~l~~L~-~L~L~~N~l~-~l~~ip~-----~l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 350 AE-----VPE------LPQNLK-QLHVEYNPLR-EFPDIPE-----SVEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp SC-----CCC------CCTTCC-EEECCSSCCS-SCCCCCT-----TCCEEECCC-------------------
T ss_pred cc-----ccc------hhhhcc-EEECCCCCCC-cCCCChH-----HHHhhhhcccccccccccCcCCEEECCC
Confidence 22 121 267889 8888877766 3 4555 33333 6889999874
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.37 E-value=1.8e-13 Score=136.47 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=55.0
Q ss_pred CCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (535)
Q Consensus 127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-- 202 (535)
....+|..+. ++|++|++++|.+... ..+..+++|++|++++|.++... ...+..+++|++|++++|....-.
T Consensus 42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 3446666543 5788888888877432 35677888888888887664311 122566778888888777543211
Q ss_pred eeCCCCCccEEEEeec
Q 009416 203 DLVNLSNLKEIILVNT 218 (535)
Q Consensus 203 ~~~~l~~L~~L~l~~c 218 (535)
.+..+++|++|++++|
T Consensus 119 ~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGN 134 (353)
T ss_dssp HHTTCTTCSEEECTTC
T ss_pred HhCCCccCCEEECCCC
Confidence 2445566666666555
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=2.7e-13 Score=146.04 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=111.5
Q ss_pred ccccceeEeeccCCChHH-HHHhcCCCCCccEEEeecCCCCcccc--cCCCCCceEEeccCcccccc----cccCCceee
Q 009416 251 CGNLKCLKFDFLPIEDEW-LCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQV----EIETPNLSI 323 (535)
Q Consensus 251 l~~L~~L~L~~~~~~~~~-l~~l~~~~~~L~~L~L~~c~~l~~l~--~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~ 323 (535)
+++|+.|+++.+.+.... .......+++|+.|++..+....... ...++|+.+++..+...... ....++|+.
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 445555555544443210 00112234455555555432211111 12345666665544332111 123456666
Q ss_pred EEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCC
Q 009416 324 FKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPP 398 (535)
Q Consensus 324 L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~ 398 (535)
+.++++.. ..+..+++|+.|++..+.... ...++.+. .+++|+ .|.++.+.++ ...|. .+..
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~---~~~~~~~~---~l~~L~-~L~Ls~N~L~-~l~~~-----~f~~ 516 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFT---ELRNLT-FLDLSQCQLE-QLSPT-----AFNS 516 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG---GEECSCCT---TCTTCC-EEECTTSCCC-EECTT-----TTTT
T ss_pred ccccccccccccccccccchhhhhhhhhhccccc---ccCchhhh---hccccC-EEECCCCccC-CcChH-----HHcC
Confidence 66665543 345567778887775432111 02234455 788888 8877766666 33444 5667
Q ss_pred cccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecCCCcceeeehh-----hhhhhhcCCC
Q 009416 399 LTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISY-----KKQLIYDGEI 473 (535)
Q Consensus 399 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~~~~~~~~~~~-----~~~l~~~~~~ 473 (535)
+++|++|+|+. ..+..+....|..+++|+.|.+..+.....+.+... -+.+...+.+
T Consensus 517 l~~L~~L~Ls~------------------N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 517 LSSLQVLNMSH------------------NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTT------------------SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCC------------------CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 88888888852 123334444667778899988875543222211110 0113344566
Q ss_pred Ccc-ccCCCcccccccccceeeeeecceeec
Q 009416 474 PRC-CQSLPVSCWQHCINEVKVEHTKSLSIT 503 (535)
Q Consensus 474 ~~~-~~~~~~~~~~~~lk~v~i~~~~~~~~~ 503 (535)
..| |...+...|...- ...+.+...+.|.
T Consensus 579 ~~C~C~~~~~~~wl~~~-~~~~~~~~~~~C~ 608 (635)
T 4g8a_A 579 FACTCEHQSFLQWIKDQ-RQLLVEVERMECA 608 (635)
T ss_dssp BCCSGGGHHHHHHHHHT-TTTBSCGGGCBBC
T ss_pred CcccCCcHHHHHHHHhC-CCccCCCCCceeC
Confidence 666 8776666665322 2234445566663
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=4.2e-13 Score=132.64 Aligned_cols=261 Identities=16% Similarity=0.042 Sum_probs=158.2
Q ss_pred cCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
++++.|++..+... .++ ..+..+++|++|+|++|.+.. +..+..+++|++|++++|.++. ++. ..+++|++
T Consensus 54 ~~l~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred CCCeEEECCCCcCC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence 58999999876533 443 467889999999999998843 2567889999999999998742 221 22389999
Q ss_pred EEEeecCCCcee--eeCCCCCccEEEEeecCC----ccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSD----IKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (535)
Q Consensus 191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 264 (535)
|++++|....-. .+..+++|+.|+++++.- .....+...+|+.|+++++....++..+ .++|+.|+++++.+
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCCcC
Confidence 999998653221 366789999999988732 1111122227888888877622223222 26788888888877
Q ss_pred ChHHHHHhcCCCCCccEEEeecCCCCcccc---cCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccc
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS 341 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~ 341 (535)
....... +..+++|+.|+++++......+ ...++|+.|+++++. +..+. ..+.++++|+
T Consensus 206 ~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp----------------~~l~~l~~L~ 267 (332)
T 2ft3_A 206 QAIELED-LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVP----------------AGLPDLKLLQ 267 (332)
T ss_dssp CCCCTTS-STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCC----------------TTGGGCTTCC
T ss_pred CccCHHH-hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecC----------------hhhhcCccCC
Confidence 6543333 5677888888888754322111 133456666665542 22111 2355677777
Q ss_pred eeEEEEecccchhhHhHHHH--HhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416 342 ETSLCFSSHLMVNIEWVVEY--FEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS 408 (535)
Q Consensus 342 ~L~l~~~~~~~~~~~~l~~~--l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~ 408 (535)
.|+++.+.........+... .. ..++++ .|.+..+.+....+++. .+..+++|+.|+++
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~---~~~~l~-~L~l~~N~~~~~~~~~~----~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGV---KRAYYN-GISLFNNPVPYWEVQPA----TFRCVTDRLAIQFG 328 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCS---SSCCBS-EEECCSSSSCGGGSCGG----GGTTBCCSTTEEC-
T ss_pred EEECCCCCCCccChhHcccccccc---cccccc-ceEeecCcccccccCcc----cccccchhhhhhcc
Confidence 77775542222000011000 01 245677 77776555443334432 45567788888875
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=134.62 Aligned_cols=227 Identities=15% Similarity=0.103 Sum_probs=152.3
Q ss_pred cCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
.+++.|++..+... .++ ..+..+++|++|+|++|.+... ..+..+++|++|+|++|.++.-. ...+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ--IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCC--EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCC--eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence 57888988876533 333 4677889999999999987432 45778999999999999874221 223678999999
Q ss_pred EEEeecCCCcee---eeCCCCCccEEEEeecCCccEEee----cCCcccEEEEeeecccCeEEecCcccccceeEeeccC
Q 009416 191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (535)
Q Consensus 191 L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~ 263 (535)
|+|++|... .+ .+..+++|+.|++.+|..+..+.. .+++|+.|+++++....++ .+..+++|+.|+|++|.
T Consensus 141 L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSC
T ss_pred eeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCc
Confidence 999998743 33 456789999999999877766653 5788899998888733322 47778888899998888
Q ss_pred CChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcc
Q 009416 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALS 339 (535)
Q Consensus 264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~ 339 (535)
++...... +.++++|+.|++.++.. +.+.. ..++|+.|+++++. +..+.. ..+.++++
T Consensus 219 l~~~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---------------~~~~~l~~ 280 (440)
T 3zyj_A 219 LSAIRPGS-FQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNN-LTLLPH---------------DLFTPLHH 280 (440)
T ss_dssp CCEECTTT-TTTCTTCCEEECTTCCC-CEECTTSSTTCTTCCEEECTTSC-CCCCCT---------------TTTSSCTT
T ss_pred cCccChhh-hccCccCCEEECCCCce-eEEChhhhcCCCCCCEEECCCCC-CCccCh---------------hHhccccC
Confidence 77643333 67788888888887543 22221 23455555555431 211111 23556788
Q ss_pred cceeEEEEecccc-hhhHhHHHHHh
Q 009416 340 LSETSLCFSSHLM-VNIEWVVEYFE 363 (535)
Q Consensus 340 L~~L~l~~~~~~~-~~~~~l~~~l~ 363 (535)
|+.|+++.++... -...++..++.
T Consensus 281 L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CCEEECCSSCEECSSTTHHHHHHHH
T ss_pred CCEEEcCCCCccCCCCchHHHHHHH
Confidence 8888886553222 01235555555
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.35 E-value=2.1e-12 Score=126.18 Aligned_cols=163 Identities=20% Similarity=0.189 Sum_probs=95.3
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.+++++|++..+... .+| .+..+++|++|+|++|.+...+.+..+++|++|++++|.++.- . .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCcc--Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEE
Confidence 458888888776433 455 4667888999999988875554478888999999988887432 2 267788888888
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecC--CccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTS--DIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 270 (535)
+++|....-..+..+++|+.|++++|. .+.. ...+++|+.|+++++....... +..+++|+.|+++++.+.+...
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 888864332245566777777776661 1111 1134455555555444111111 4444445555554444433211
Q ss_pred HhcCCCCCccEEEeec
Q 009416 271 NGISKLPLLEYLSMTK 286 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~ 286 (535)
+..+++|+.|++++
T Consensus 191 --l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 191 --LASLPNLIEVHLKN 204 (308)
T ss_dssp --GGGCTTCCEEECTT
T ss_pred --hcCCCCCCEEEccC
Confidence 23344444444444
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=9.5e-13 Score=137.00 Aligned_cols=218 Identities=20% Similarity=0.143 Sum_probs=158.5
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++.|++..+.... -.|..+..+++|++|+|++|.+...+.+..+++|++|+|++|.++. +...++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence 489999998875442 2345778899999999999988544448899999999999998853 234589999999
Q ss_pred eecCCCceeeeCCCCCccEEEEeec--CCccEEee-cCCcccEEEEeeec-ccCeEEecC-cccccceeEeeccCCChHH
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTY-LFPIEVNVS-SCGNLKCLKFDFLPIEDEW 268 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c--~~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~-~l~~L~~L~L~~~~~~~~~ 268 (535)
++|... .+....+++|+.|++++| ..+....+ .+++|+.|+++++. .+..+..+. .+++|+.|+|++|.+++.
T Consensus 107 ~~N~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 107 ANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CSSCCC-CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred cCCcCC-CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 999653 444456789999999998 33333333 68999999999988 333334444 789999999999998765
Q ss_pred HHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCccccccc---ccCCceeeEEEcCcch------hhccc
Q 009416 269 LCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI------SFSSN 336 (535)
Q Consensus 269 l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~------~~~~~ 336 (535)
.. ...+++|+.|+++++.- +.++. ..++|+.|+++++. +..++ ...++|+.+.+.|+.. ..+..
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred -cc-cccCCCCCEEECCCCCC-CCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 22 34689999999999753 33433 45789999998864 33333 2457899999998765 23445
Q ss_pred CcccceeE
Q 009416 337 ALSLSETS 344 (535)
Q Consensus 337 l~~L~~L~ 344 (535)
++.|+.++
T Consensus 261 l~~L~~l~ 268 (487)
T 3oja_A 261 NQRVQTVA 268 (487)
T ss_dssp CHHHHHHH
T ss_pred CCCCcEEe
Confidence 55555443
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=2.6e-12 Score=125.52 Aligned_cols=143 Identities=18% Similarity=0.152 Sum_probs=88.5
Q ss_pred cCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEE
Q 009416 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (535)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l 215 (535)
..+++|++|++++|.+...+.+..+++|++|++++|.+.+-. . +..+++|++|++++|..-.--.+..+++|+.|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence 346899999999998866567889999999999999884322 2 7889999999999997433224666777888877
Q ss_pred eecC--CccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeec
Q 009416 216 VNTS--DIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (535)
Q Consensus 216 ~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~ 286 (535)
++|. .+.. ...+++|+.|+++++.....+ .+..+++|+.|+++++.+.+... +..+++|+.|++++
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADD 182 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCC
Confidence 7762 1111 114455555555555411111 14445555555555554443111 34445555555544
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.32 E-value=2.1e-12 Score=124.71 Aligned_cols=201 Identities=16% Similarity=0.061 Sum_probs=118.1
Q ss_pred CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---
Q 009416 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--- 202 (535)
Q Consensus 128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--- 202 (535)
...+|..+ .++|++|+++++.+... ..+..+++|++|+++++.++... ...+..+++|++|++++|..++.+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence 34556433 46888888888877432 45678888889988888764321 223567888888888888755444
Q ss_pred eeCCCCCccEEEEeecCC--ccEE-eecCCcccEEEEeeecccCeE-EecCcccccceeEeeccCCChHHHHHhcCCCCC
Q 009416 203 DLVNLSNLKEIILVNTSD--IKRV-EIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278 (535)
Q Consensus 203 ~~~~l~~L~~L~l~~c~~--l~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~ 278 (535)
.+..+++|++|++++|.- +..- ...+++|++|+++++.....+ ..+..+++|+.|+++++.++.... ..+..+++
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~ 178 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHS 178 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccc
Confidence 355667888888877721 1111 114567777777766622222 235667777777777776654222 22456677
Q ss_pred ccEEEeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEe
Q 009416 279 LEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFS 348 (535)
Q Consensus 279 L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~ 348 (535)
|+.|+++++...+..+. ..++|+.|+++++. +..+ ....+.++++|+.++++.+
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~---------------~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSAL---------------PTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCC---------------CHHHHTTCTTCCEEECCSS
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcC---------------CHHHcccCcccCEEeccCC
Confidence 77777776543222121 12344444444331 1111 0134667888888888655
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.30 E-value=4.5e-13 Score=130.78 Aligned_cols=234 Identities=13% Similarity=0.027 Sum_probs=135.1
Q ss_pred eEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCce----eeeCCCCCccEEEEee
Q 009416 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES----LDLVNLSNLKEIILVN 217 (535)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~----~~~~~l~~L~~L~l~~ 217 (535)
+.++.+++.+...+. ...++|++|+++++.++.- ....+..+++|++|++++|..... ..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 356677766643322 2347999999999987421 123367899999999999864321 1334567888888887
Q ss_pred cC--CccEEeecCCcccEEEEeeecccCeE--EecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCc-c
Q 009416 218 TS--DIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT-S 292 (535)
Q Consensus 218 c~--~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~-~ 292 (535)
|. .+......+++|++|+++++...... ..+..+++|+.|+++++.+..... ..+.++++|+.|+++++...+ .
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEECCCCcccccc
Confidence 72 11111225667777777666511111 245566666777766665543322 224556666666666643222 1
Q ss_pred cccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhc
Q 009416 293 VRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAM 367 (535)
Q Consensus 293 l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~ 367 (535)
++.. ....++|+.|.++++.. ..+.++++|+.|+++.+.... .....+. .
T Consensus 167 ~~~~------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~---~ 221 (306)
T 2z66_A 167 LPDI------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS----LDTFPYK---C 221 (306)
T ss_dssp ECSC------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB----CCSGGGT---T
T ss_pred chhH------------------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc----cChhhcc---C
Confidence 1111 11223444444444332 345677888888886553222 1122245 7
Q ss_pred ccccceeEEEEeeccccccccccccccCCCCc-ccceeeEEEEe
Q 009416 368 FQKFSKVLNLQCREGENVIVPQELRQIQSPPL-TSVKKLNYSVR 410 (535)
Q Consensus 368 l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l-~~L~~L~l~~~ 410 (535)
+++|+ .|.++.+.+. ...|. .+..+ ++|++|+++..
T Consensus 222 l~~L~-~L~L~~N~l~-~~~~~-----~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 222 LNSLQ-VLDYSLNHIM-TSKKQ-----ELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTCC-EEECTTSCCC-BCSSS-----SCCCCCTTCCEEECTTC
T ss_pred cccCC-EeECCCCCCc-ccCHH-----HHHhhhccCCEEEccCC
Confidence 89999 8888877766 44454 45555 48999999643
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.27 E-value=2e-12 Score=124.77 Aligned_cols=171 Identities=15% Similarity=0.142 Sum_probs=123.9
Q ss_pred hcCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEe-eChhHHHHHHhCCCcc
Q 009416 113 ESEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVC-ADDQAIASLISGCPLI 188 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~~~p~L 188 (535)
.+++++|++..+... .+| ..+..+++|++|+|++|.+.. +..+..+++|++|++++|. ++.-. ...+..+++|
T Consensus 31 ~~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTC
T ss_pred CCCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCC
Confidence 357888888776533 344 356778999999999987732 3567789999999999986 43211 2236778999
Q ss_pred cEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---e-cCCcccEEEEeeecccCeEE-ecCcccccceeEeec
Q 009416 189 EYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---I-KTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDF 261 (535)
Q Consensus 189 e~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~ 261 (535)
++|++++|...... .+..+++|++|++++|. +..+. + .+++|+.|+++++....++. .+..+++|+.|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 99999998654322 35668899999999882 22222 2 57899999999887322232 477899999999999
Q ss_pred cCCChHHHHHhcCCCCCccEEEeecCC
Q 009416 262 LPIEDEWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 262 ~~~~~~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
+.+.+..+.. +..+++|+.|+++++.
T Consensus 187 n~l~~~~~~~-~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 187 NRVAHVHPHA-FRDLGRLMTLYLFANN 212 (285)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred CcccccCHhH-ccCcccccEeeCCCCc
Confidence 9887654433 6788999999999864
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.25 E-value=3.5e-12 Score=124.82 Aligned_cols=198 Identities=18% Similarity=0.133 Sum_probs=111.1
Q ss_pred ceEEEEeccCCCCccCCcccc-------CCCceeEEEEeCccccC--CCCc--ccCcccceeEeeeEeeChh--HHHHHH
Q 009416 116 VKELVLVHWRSERRNLPEIIF-------YVESLHVLELSYCKLQQ--PSEN--VKLFSLRKLALREVCADDQ--AIASLI 182 (535)
Q Consensus 116 l~~L~L~~~~~~~~~lp~~l~-------~~~~L~~L~L~~~~~~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l~~~~ 182 (535)
++.|++..+......+|..++ .+++|++|+|++|.+.. +..+ ..+++|++|++++|.++.. .+..+.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 344444433322335666554 67899999999998852 3333 7889999999999988432 222211
Q ss_pred -hCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEe
Q 009416 183 -SGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKF 259 (535)
Q Consensus 183 -~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L 259 (535)
...++|++|++++|...+.. .+..+++|++|++++|.-..... .+....+..+++|+.|++
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~L 208 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVLAL 208 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH----------------HHHHSCTTSCTTCCEEEC
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH----------------HHHHHHhccCCCCCEEEC
Confidence 11388999999888643221 34445556666555542111000 000112366778888888
Q ss_pred eccCCCh--HHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCcccccccccC-CceeeEEEcCcc
Q 009416 260 DFLPIED--EWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDL 330 (535)
Q Consensus 260 ~~~~~~~--~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~~~-p~L~~L~~~g~~ 330 (535)
++|.+.. .....++.++++|+.|+++++...+..+. ..++|+.|+++++. +..+.... ++|+.|+++++.
T Consensus 209 ~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNR 285 (312)
T ss_dssp TTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSC
T ss_pred CCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCC
Confidence 8887773 33445556778888888887654332221 23567777776653 22322111 345555554443
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.25 E-value=5.4e-13 Score=130.61 Aligned_cols=170 Identities=19% Similarity=0.101 Sum_probs=113.4
Q ss_pred CCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHH-------HhCCCcccEEEEeecCCCcee--ee--CC
Q 009416 138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL-------ISGCPLIEYLEIRSCEGLESL--DL--VN 206 (535)
Q Consensus 138 ~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~-------~~~~p~Le~L~L~~c~~l~~~--~~--~~ 206 (535)
.++|++|++++|.+..|..+. ..|+.|+++++.+....++.. ...+++|++|++++|...+.+ .+ ..
T Consensus 42 ~~~L~~l~l~~n~l~~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTEADLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTTCCCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeecccccccHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 466778888888773332222 238889998887732111111 226899999999999765433 22 67
Q ss_pred CCCccEEEEeecC--CccEEeecC-----CcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChH--HHHHh-cCC
Q 009416 207 LSNLKEIILVNTS--DIKRVEIKT-----SNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE--WLCNG-ISK 275 (535)
Q Consensus 207 l~~L~~L~l~~c~--~l~~~~~~~-----~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~--~l~~l-~~~ 275 (535)
+++|++|++++|. ........+ ++|++|+++++. ....+..++.+++|+.|++++|.+.+. .+..+ +..
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 8999999999982 221111123 899999999988 333335688899999999999998765 23332 278
Q ss_pred CCCccEEEeecCCCCc--cccc----CCCCCceEEeccCc
Q 009416 276 LPLLEYLSMTKCHKLT--SVRI----SSPCLKTLILECCD 309 (535)
Q Consensus 276 ~~~L~~L~L~~c~~l~--~l~~----~~~~L~~L~l~~c~ 309 (535)
+++|+.|+++++.-.. .++. ..++|+.|+++++.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 9999999999875321 2211 34677777777653
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.25 E-value=1.4e-11 Score=115.52 Aligned_cols=184 Identities=16% Similarity=0.099 Sum_probs=92.0
Q ss_pred ceeEEEEeCccccCC--CCcccCcccceeEeeeEe-eChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEE
Q 009416 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEI 213 (535)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L 213 (535)
+|++|++++|.+... ..+..+++|++|++++|. ++.-. ...+..+++|++|++++|..+..+ .+.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666655322 234556666666666664 32110 112445666666666663334333 23345666666
Q ss_pred EEeec--CCccEEeecCCccc---EEEEeee-cccCeE-EecCcccccc-eeEeeccCCChHHHHHhcCCCCCccEEEee
Q 009416 214 ILVNT--SDIKRVEIKTSNVN---ALAIHQT-YLFPIE-VNVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (535)
Q Consensus 214 ~l~~c--~~l~~~~~~~~~L~---~L~l~~~-~~~~~~-~~~~~l~~L~-~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~ 285 (535)
++++| ..+.. ...+++|+ .|+++++ ....++ ..+.++++|+ .|+++++.+.. .....+.. ++|+.|++.
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-CCCCEEEcC
Confidence 66665 22221 11344554 6666666 322122 2356666777 77777666652 22222333 667777777
Q ss_pred cCCCCccccc----CC-CCCceEEeccCcccccccc-cCCceeeEEEcC
Q 009416 286 KCHKLTSVRI----SS-PCLKTLILECCDKLIQVEI-ETPNLSIFKYHG 328 (535)
Q Consensus 286 ~c~~l~~l~~----~~-~~L~~L~l~~c~~L~~l~~-~~p~L~~L~~~g 328 (535)
++..++.++. .. ++|+.|++++.. +..+.. ..++|+.|.+.+
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARN 235 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTT
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccC
Confidence 6654544432 23 466666666532 333321 234555555544
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.25 E-value=1.4e-11 Score=115.57 Aligned_cols=191 Identities=12% Similarity=0.100 Sum_probs=107.9
Q ss_pred cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCcc-cc-CC-CCcccCcccceeEeee-EeeChhHHHHHHhCCCcc
Q 009416 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCK-LQ-QP-SENVKLFSLRKLALRE-VCADDQAIASLISGCPLI 188 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-~~-~~-~~~~~l~~L~~L~L~~-~~~~~~~l~~~~~~~p~L 188 (535)
.+++.|++..+... .+|. .+..+++|++|++++|. +. .+ ..+..+++|++|++++ +.++.-. ...+..+++|
T Consensus 31 ~~l~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCS--EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred CcccEEEEeCCcce--EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence 36777777665432 4444 45566777777777775 52 22 3456677777777776 5543211 1224567777
Q ss_pred cEEEEeecCCCceeeeCCCCCcc---EEEEeecCCccEEee----cCCccc-EEEEeeecccCeEEecCcccccceeEee
Q 009416 189 EYLEIRSCEGLESLDLVNLSNLK---EIILVNTSDIKRVEI----KTSNVN-ALAIHQTYLFPIEVNVSSCGNLKCLKFD 260 (535)
Q Consensus 189 e~L~L~~c~~l~~~~~~~l~~L~---~L~l~~c~~l~~~~~----~~~~L~-~L~l~~~~~~~~~~~~~~l~~L~~L~L~ 260 (535)
++|++++|...+--.+..+++|+ .|++++|..+..+.. .+++|+ .|+++++....++......++|+.|+++
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 77777777533211244455565 777777655555542 456777 7777766522222222223677777777
Q ss_pred ccC-CChHHHHHhcCCC-CCccEEEeecCCCCccccc-CCCCCceEEeccCc
Q 009416 261 FLP-IEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCD 309 (535)
Q Consensus 261 ~~~-~~~~~l~~l~~~~-~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~ 309 (535)
++. +... ....+.++ ++|+.|+++++. ++.++. .+++|+.|.+.++.
T Consensus 188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC-
T ss_pred CCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCcc
Confidence 773 5432 22235556 777777777643 334443 35667777766654
No 78
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=1.2e-11 Score=112.45 Aligned_cols=147 Identities=19% Similarity=0.224 Sum_probs=88.6
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.++++.|++..+... .+| .+..+++|++|++++|.+...+.+..+++|++|++++|.++..... .++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEE
Confidence 357778887765433 455 4667788888888888665556667778888888887776543222 256677788887
Q ss_pred EeecCCCce--eeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416 193 IRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (535)
Q Consensus 193 L~~c~~l~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 270 (535)
+++|..... -.+..+++|++|++++|..+..+ + .+..+++|+.|++++|.+.+..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--------------------~-~l~~l~~L~~L~l~~n~i~~~~-- 175 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--------------------M-PLKTLPELKSLNIQFDGVHDYR-- 175 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--------------------G-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--------------------H-hhcCCCCCCEEECCCCCCcChH--
Confidence 777755431 13455666666666665322222 1 3445555666666655554421
Q ss_pred HhcCCCCCccEEEeecC
Q 009416 271 NGISKLPLLEYLSMTKC 287 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~c 287 (535)
.+..+++|+.|++.+.
T Consensus 176 -~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp -TGGGCSSCCEEEECBC
T ss_pred -HhccCCCCCEEEeeCc
Confidence 2445566666666653
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=1.9e-11 Score=116.95 Aligned_cols=97 Identities=21% Similarity=0.127 Sum_probs=57.0
Q ss_pred ceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 116 l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.+.+++.... ...+|..+. ++|++|+|++|.+... ..+..+++|++|+++++.++.- ....+..+++|++|++
T Consensus 18 ~~~l~~~~~~--l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCSSKK--LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWV 92 (270)
T ss_dssp TTEEECTTSC--CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEEC
T ss_pred CCEEEccCCC--CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEEC
Confidence 4445444332 334665443 6788888888877433 3567788888888887766321 1223456778888888
Q ss_pred eecCCCcee---eeCCCCCccEEEEeec
Q 009416 194 RSCEGLESL---DLVNLSNLKEIILVNT 218 (535)
Q Consensus 194 ~~c~~l~~~---~~~~l~~L~~L~l~~c 218 (535)
++|... .+ .+..+++|++|+++++
T Consensus 93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp CSSCCC-CCCTTTTTTCSSCCEEECCSS
T ss_pred CCCcCC-cCCHhHcccccCCCEEECCCC
Confidence 777532 22 2334556666665554
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=1.8e-11 Score=117.41 Aligned_cols=201 Identities=18% Similarity=0.177 Sum_probs=114.4
Q ss_pred CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--e
Q 009416 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (535)
Q Consensus 128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~ 203 (535)
...+|..+. ++|++|++++|.+... ..+.++++|++|++++|.++... ...+..+++|++|++++|...... .
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence 345665442 5788888888877422 35677888888888888763211 123567788888888887643221 3
Q ss_pred eCCCCCccEEEEeec--CCccEEee-cCCcccEEEEeeec-cc-CeEEecCcccccceeEeeccCCChHH---HHHhcCC
Q 009416 204 LVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTY-LF-PIEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISK 275 (535)
Q Consensus 204 ~~~l~~L~~L~l~~c--~~l~~~~~-~~~~L~~L~l~~~~-~~-~~~~~~~~l~~L~~L~L~~~~~~~~~---l~~l~~~ 275 (535)
+..+++|++|++.+| ..+....+ .+++|+.|+++++. .. .++..+.++++|+.|++++|.+.+.. +.. +..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence 556677888887776 22222222 56777777777766 22 23456677778888888777765522 111 222
Q ss_pred CCCcc-EEEeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEec
Q 009416 276 LPLLE-YLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349 (535)
Q Consensus 276 ~~~L~-~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~ 349 (535)
++.|. .|+++++.. +.++. ...+|+.|+++++. +..+.. ..+.++++|+.++++.++
T Consensus 175 L~~l~l~L~ls~n~l-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---------------~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 175 MPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQ-LKSVPD---------------GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CTTCCEEEECCSSCC-CEECTTSSCSCCEEEEECCSSC-CSCCCT---------------TTTTTCCSCCEEECCSSC
T ss_pred ccccceeeecCCCcc-cccCccccCCCcccEEECCCCc-eeecCH---------------hHhcccccccEEEccCCc
Confidence 33333 666666432 22221 11244455544432 111110 235667888888886553
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=8.5e-12 Score=119.51 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=104.6
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.++++.|.+..+... .++ .+..+++|++|++++|.+...+.+..+++|++|++++|.++.. ....+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~--~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK--SVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCC--CCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcc--ccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 457888887765432 333 4667888888888888876656677888888888888877421 122356788888888
Q ss_pred EeecCCCcee--eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416 193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 193 L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~ 265 (535)
+++|...... .+..+++|++|++++| .+..+. ..+++|+.|+++++. ....+..+..+++|+.|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 8887643222 2456677888887777 222222 145666666666665 2211222455666666666666655
Q ss_pred hHHHHHhcCCCCCccEEEeecC
Q 009416 266 DEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 266 ~~~l~~l~~~~~~L~~L~L~~c 287 (535)
+... ..+..+++|+.|++.++
T Consensus 195 ~~~~-~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 195 SVPD-GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCT-TTTTTCTTCCEEECCSS
T ss_pred ccCH-HHHhCCcCCCEEEccCC
Confidence 4222 22455666666666664
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=121.24 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=87.3
Q ss_pred HHHHHHHHHhcCceEEEEeccCCCCccCCccc--cCCCceeEEEEeCccccCC------CCcccCcccceeEeeeEeeCh
Q 009416 104 AGRCLGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADD 175 (535)
Q Consensus 104 ~~~wl~~~~~~~l~~L~L~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~ 175 (535)
+..........++++|++..+.... ..|..+ ..+++|++|+|++|.+... ..+..+++|++|++++|.+..
T Consensus 81 ~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 159 (310)
T 4glp_A 81 LVGALRVLAYSRLKELTLEDLKITG-TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA 159 (310)
T ss_dssp HHHHHHHHHHSCCCEEEEESCCCBS-CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred HHHHHHhcccCceeEEEeeCCEecc-chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch
Confidence 3333333334456666665543221 233333 4455566666665555321 111235555555555555421
Q ss_pred hHHHHHHhCCCcccEEEEeecCCCce------eeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEE---
Q 009416 176 QAIASLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV--- 246 (535)
Q Consensus 176 ~~l~~~~~~~p~Le~L~L~~c~~l~~------~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~--- 246 (535)
. ....++.+++|++|++++|...+. ..+..+++|++|++++| ....++.
T Consensus 160 ~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N---------------------~l~~l~~~~~ 217 (310)
T 4glp_A 160 F-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT---------------------GMETPTGVCA 217 (310)
T ss_dssp C-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS---------------------CCCCHHHHHH
T ss_pred h-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC---------------------CCCchHHHHH
Confidence 1 111234455555555555543221 11223444555555444 3111111
Q ss_pred -ecCcccccceeEeeccCCChHHHHHhcCCC---CCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc--cccCC
Q 009416 247 -NVSSCGNLKCLKFDFLPIEDEWLCNGISKL---PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV--EIETP 319 (535)
Q Consensus 247 -~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~---~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l--~~~~p 319 (535)
.++.+++|++|+|++|.+.+..+.. +..+ ++|++|+++++.- +.++. .+++|+.|+++++. +..+ ....+
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~L~~L~Ls~N~-l~~~~~~~~l~ 294 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGL-EQVPKGLPAKLRVLDLSSNR-LNRAPQPDELP 294 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCC-CSCCSCCCSCCSCEECCSCC-CCSCCCTTSCC
T ss_pred HHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCC-CchhhhhcCCCCEEECCCCc-CCCCchhhhCC
Confidence 1234455666666655554432222 1222 4666666655432 23333 22456666665542 2221 12334
Q ss_pred ceeeEEEcCc
Q 009416 320 NLSIFKYHGD 329 (535)
Q Consensus 320 ~L~~L~~~g~ 329 (535)
+|+.|.++++
T Consensus 295 ~L~~L~L~~N 304 (310)
T 4glp_A 295 EVDNLTLDGN 304 (310)
T ss_dssp CCSCEECSST
T ss_pred CccEEECcCC
Confidence 5555555554
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.17 E-value=2.7e-11 Score=116.00 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=88.8
Q ss_pred ccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccE
Q 009416 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE 212 (535)
Q Consensus 135 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~ 212 (535)
...+++|+.|+++++.+...+.+..+++|++|++++|.+..- . .+..+++|++|++++|...+.. .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345689999999999987767788999999999999988542 2 3678999999999998643222 2456677888
Q ss_pred EEEeecCCccEEe---e-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416 213 IILVNTSDIKRVE---I-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 213 L~l~~c~~l~~~~---~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
|++++|. +..+. + .+++|++|+++++. ....+..+..+++|+.|++++|.+++.. ...+..+++|+.|+++++
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCC
Confidence 8777762 11111 1 34455555555544 1111112344445555555544444211 111334444444444443
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=3.2e-11 Score=116.69 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=62.1
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
.++++.|++..+... .++ .+..+++|++|++++|.+...+.+..+++|++|++++|.++. ++. +..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcc--cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEE
Confidence 356777777665432 333 356677888888888777544446777788888887777643 222 56777777777
Q ss_pred EeecCCCceeeeCCCCCccEEEEeec
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNT 218 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c 218 (535)
+++|....--.+..+++|+.|++++|
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNN 144 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCC
Confidence 77775322113444556666666555
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.17 E-value=1.6e-12 Score=131.29 Aligned_cols=99 Identities=7% Similarity=-0.060 Sum_probs=57.2
Q ss_pred hcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccc---cccccccccCC--CCcccceeeEE
Q 009416 333 FSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENV---IVPQELRQIQS--PPLTSVKKLNY 407 (535)
Q Consensus 333 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~---~~p~~~~~~~~--~~l~~L~~L~l 407 (535)
.+.++++|+.|+++.+.........++..+. .+++|+ .|.|+.+.+... .++. .+ ..+++|++|+|
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~---~~~~L~-~L~L~~n~i~~~~~~~l~~-----~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALK---SWPNLR-ELGLNDCLLSARGAAAVVD-----AFSKLENIGLQTLRL 281 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGG---GCTTCC-EEECTTCCCCHHHHHHHHH-----HHHTCSSCCCCEEEC
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHc---cCCCcC-EEECCCCCCchhhHHHHHH-----HHhhccCCCeEEEEC
Confidence 4456777777777655322101234566666 788888 777775555421 1333 22 33678888888
Q ss_pred EEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416 408 SVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
+.+. ..+ .++..++..+...+|+|+.|.+..++
T Consensus 282 ~~n~-----------i~~--~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 282 QYNE-----------IEL--DAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CSSC-----------CBH--HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCc-----------CCH--HHHHHHHHHHHhcCCCceEEEccCCc
Confidence 6322 111 13344555555667889988887543
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.15 E-value=7.1e-12 Score=126.55 Aligned_cols=71 Identities=17% Similarity=-0.012 Sum_probs=36.3
Q ss_pred cccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccc---cccccccccCC-CCcccceeeEEEE
Q 009416 334 SSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENV---IVPQELRQIQS-PPLTSVKKLNYSV 409 (535)
Q Consensus 334 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~---~~p~~~~~~~~-~~l~~L~~L~l~~ 409 (535)
+.++++|+.|+++.+.........++..+.. +.+++|+ .|.++.+.+... .+|. .+ ..+++|++|+++.
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~~~L~-~L~L~~n~i~~~g~~~l~~-----~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSK-LENIGLQ-TLRLQYNEIELDAVRTLKT-----VIDEKMPDLLFLELNG 312 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHT-CSSCCCC-EEECCSSCCBHHHHHHHHH-----HHHHHCTTCCEEECTT
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhh-ccCCCeE-EEECcCCcCCHHHHHHHHH-----HHHhcCCCceEEEccC
Confidence 4456666666665443222112234444430 0267777 777776555511 2454 22 2456788887764
Q ss_pred ee
Q 009416 410 RT 411 (535)
Q Consensus 410 ~~ 411 (535)
++
T Consensus 313 N~ 314 (386)
T 2ca6_A 313 NR 314 (386)
T ss_dssp SB
T ss_pred Cc
Confidence 43
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.14 E-value=3.5e-11 Score=115.10 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=104.7
Q ss_pred cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
++++.|++..+... .+|. .+..+++|++|+|++|.+... ..+..+++|++|++++|.+..-. ...+..+++|++
T Consensus 37 ~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence 47888988876533 4554 577889999999999988433 33478999999999999874321 234678999999
Q ss_pred EEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeecccCeE-EecCcccccceeEeeccC
Q 009416 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLP 263 (535)
Q Consensus 191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~ 263 (535)
|++++|...... .+..+++|++|++++|. +..+. ..+++|+.|+++++....++ ..+..+++|+.|++++|.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 999998643221 34567888888887771 22221 13456666666655411111 224455556666665555
Q ss_pred CChHHHHHhcCCCCCccEEEeec
Q 009416 264 IEDEWLCNGISKLPLLEYLSMTK 286 (535)
Q Consensus 264 ~~~~~l~~l~~~~~~L~~L~L~~ 286 (535)
+... ....+..+++|+.|++.+
T Consensus 193 l~~~-~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 193 LKRV-PEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CSCC-CTTTTTTCTTCCEEECCS
T ss_pred CCcC-CHHHhccccCCCEEEecC
Confidence 4432 112234455555555555
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.13 E-value=3.8e-11 Score=117.31 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=138.2
Q ss_pred CceEEEEeccCCCCccCCcc--ccCCCceeEEEEeCccccC--CCCc--ccCcccceeEeeeEeeChhH--HH-HHHhCC
Q 009416 115 EVKELVLVHWRSERRNLPEI--IFYVESLHVLELSYCKLQQ--PSEN--VKLFSLRKLALREVCADDQA--IA-SLISGC 185 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~~~~--~~~~--~~l~~L~~L~L~~~~~~~~~--l~-~~~~~~ 185 (535)
.++.+.+.........+... ...+++|++|++++|.+.. +..+ ..+++|++|++++|.++... +. ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46667666543322222211 1234679999999998743 2344 78999999999999885311 11 224478
Q ss_pred CcccEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccC
Q 009416 186 PLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (535)
Q Consensus 186 p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~ 263 (535)
++|++|++++|...... .+..+++|++|++++|.-..... .+....+..+++|++|++++|.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------------LMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------------HHTTSCTTSSCCCCSCBCCSSC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------------hhHHHhhhcCCCCCEEECCCCC
Confidence 99999999988653222 33445556666555542110000 0011234678999999999999
Q ss_pred CCh--HHHHHhcCCCCCccEEEeecCCCCccccc---CC---CCCceEEeccCcccccccc-cCCceeeEEEcCcch---
Q 009416 264 IED--EWLCNGISKLPLLEYLSMTKCHKLTSVRI---SS---PCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI--- 331 (535)
Q Consensus 264 ~~~--~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~---~~L~~L~l~~c~~L~~l~~-~~p~L~~L~~~g~~~--- 331 (535)
++. .....++.++++|++|+++++......+. .+ ++|++|+++++. +..+.. ..++|+.|+++++..
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSC
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCC
Confidence 873 33334457789999999999764443332 22 699999998764 334432 237999999998876
Q ss_pred hhcccCcccceeEEEEe
Q 009416 332 SFSSNALSLSETSLCFS 348 (535)
Q Consensus 332 ~~~~~l~~L~~L~l~~~ 348 (535)
..+..+++|+.|+++.+
T Consensus 288 ~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTSCCCCSCEECSST
T ss_pred chhhhCCCccEEECcCC
Confidence 24577899999988644
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=5.3e-11 Score=126.53 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=123.5
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
..+|+.|.+..+... .+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+..- + .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCC--CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCC--CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence 468888888776533 444 4778899999999999886555588999999999999988432 2 367899999999
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 270 (535)
|++|....--.+..+++|+.|++++|. +..+. ..+++|+.|++++|....... +..+++|+.|+|++|.+.+. .
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~ 191 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R 191 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--G
T ss_pred ecCCCCCCCccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--h
Confidence 999875432256678899999999882 22222 267889999998887222222 78889999999998888763 2
Q ss_pred HhcCCCCCccEEEeecCC
Q 009416 271 NGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~c~ 288 (535)
. +..+++|+.|+|.++.
T Consensus 192 ~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 A-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp G-GTTCTTCSEEECCSEE
T ss_pred H-HccCCCCCEEEccCCc
Confidence 3 6778899999998854
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.12 E-value=1.3e-10 Score=124.94 Aligned_cols=255 Identities=14% Similarity=0.095 Sum_probs=151.2
Q ss_pred CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec
Q 009416 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c 218 (535)
.+++.+.+.++.+..........+|+.|++.++.+.... ...++.|+.+.+..+..........+++|+.|+++.+
T Consensus 306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n 381 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 381 (635)
T ss_dssp TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC----CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS
T ss_pred cccccccccccccccccccccchhhhhhhcccccccCcC----cccchhhhhcccccccCCCCcccccccccccchhhcc
Confidence 344444444443322223334445555555555442110 1234555555555554433333344567777777665
Q ss_pred CCccEEe-----ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416 219 SDIKRVE-----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (535)
Q Consensus 219 ~~l~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l 293 (535)
....... ...++|+.+++..+........+..+++|+.+++..+..........+..+++++.++++.+......
T Consensus 382 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~ 461 (635)
T 4g8a_A 382 GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 461 (635)
T ss_dssp CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred ccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence 2211111 14566777776665533334456677888888887655444333344667788888888875433222
Q ss_pred cc---CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHH
Q 009416 294 RI---SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEY 361 (535)
Q Consensus 294 ~~---~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 361 (535)
+. ..++|+.|+++++.....+ ....++|+.|+++++.. ..+.++++|+.|+|+.+.... ..+..
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~----l~~~~ 537 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS----LDTFP 537 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB----CCCGG
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC----CChhH
Confidence 22 3468899999887654322 23557899999998865 457889999999997653333 22344
Q ss_pred HhhhhcccccceeEEEEeeccccccccccccccCCCCc-ccceeeEEEEee
Q 009416 362 FEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPL-TSVKKLNYSVRT 411 (535)
Q Consensus 362 l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l-~~L~~L~l~~~~ 411 (535)
++ ++++|+ .|.++.|.+. ...|. .+..+ ++|++|+|+..|
T Consensus 538 ~~---~l~~L~-~L~Ls~N~l~-~~~~~-----~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 538 YK---CLNSLQ-VLDYSLNHIM-TSKKQ-----ELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp GT---TCTTCC-EEECTTSCCC-BCCSS-----CTTCCCTTCCEEECTTCC
T ss_pred Hh---CCCCCC-EEECCCCcCC-CCCHH-----HHHhhhCcCCEEEeeCCC
Confidence 56 799999 9998888877 44444 45455 589999997555
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=9.4e-11 Score=113.34 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=121.1
Q ss_pred cCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEE
Q 009416 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (535)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l 215 (535)
..+++|++|++++|.+...+.+..+++|++|++++|.+++.. . +..+++|++|++++|....--.+..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 346888999999998865567888999999999998874322 2 6788999999999886433225677889999999
Q ss_pred eecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416 216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (535)
Q Consensus 216 ~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l 293 (535)
++|. +..+. ..+++|+.|+++++....+ ..+..+++|+.|++++|.+.+... +..+++|+.|+++++. ++.+
T Consensus 120 ~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~l 193 (291)
T 1h6t_A 120 EHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDL 193 (291)
T ss_dssp TTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBC
T ss_pred CCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCCC
Confidence 8882 22222 2678899999988873222 467788899999999888876432 6788999999998863 3333
Q ss_pred cc--CCCCCceEEeccCc
Q 009416 294 RI--SSPCLKTLILECCD 309 (535)
Q Consensus 294 ~~--~~~~L~~L~l~~c~ 309 (535)
+. ..++|+.|++++++
T Consensus 194 ~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGTTCTTCSEEEEEEEE
T ss_pred hhhccCCCCCEEECcCCc
Confidence 32 45688888887653
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.09 E-value=2e-10 Score=110.96 Aligned_cols=169 Identities=15% Similarity=0.028 Sum_probs=94.3
Q ss_pred ccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEE
Q 009416 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (535)
Q Consensus 135 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~ 214 (535)
+..++++++++++++.+...+. .-.++++.|++++|.++... ...+..+++|++|++++|....-.....+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 4456677777777776643221 12367777777777663221 123566777777777776533222234566777777
Q ss_pred Eeec--CCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416 215 LVNT--SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (535)
Q Consensus 215 l~~c--~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~ 291 (535)
++++ ..+......+++|+.|+++++. ....+..+.++++|+.|++++|.+... ....+..+++|+.|+++++. ++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~ 161 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LT 161 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CS
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CC
Confidence 7666 2222211245677777777666 222223466777777777777766542 22335566777777777653 23
Q ss_pred cccc----CCCCCceEEecc
Q 009416 292 SVRI----SSPCLKTLILEC 307 (535)
Q Consensus 292 ~l~~----~~~~L~~L~l~~ 307 (535)
.++. ..++|+.|++++
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCS
T ss_pred ccCHHHhcCcCCCCEEECCC
Confidence 3332 224555555544
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.08 E-value=1e-10 Score=106.16 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=100.1
Q ss_pred cCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCc--eeeeCCCCCccEE
Q 009416 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEI 213 (535)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~--~~~~~~l~~L~~L 213 (535)
..+++|++|++++|.+...+.+..+++|++|++++|.+..- . .+..+++|++|++++|.... .-.+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45688999999999886545778899999999998866332 2 36778889999988876532 1134444555555
Q ss_pred EEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccC-CChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416 214 ILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (535)
Q Consensus 214 ~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~L~~c~~l~ 291 (535)
++ +++. ....+..+..+++|+.|++++|. +.... .+..+++|+.|++++|.- +
T Consensus 118 ~L---------------------s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i-~ 172 (197)
T 4ezg_A 118 DI---------------------SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGV-H 172 (197)
T ss_dssp EC---------------------CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCC-C
T ss_pred Ee---------------------cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCC-c
Confidence 44 4444 22224457788999999999887 55532 367899999999999753 3
Q ss_pred cccc--CCCCCceEEeccC
Q 009416 292 SVRI--SSPCLKTLILECC 308 (535)
Q Consensus 292 ~l~~--~~~~L~~L~l~~c 308 (535)
.++. ..++|+.|++.+.
T Consensus 173 ~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 173 DYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCTTGGGCSSCCEEEECBC
T ss_pred ChHHhccCCCCCEEEeeCc
Confidence 3322 4567888888653
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=6.5e-11 Score=113.54 Aligned_cols=187 Identities=19% Similarity=0.158 Sum_probs=128.5
Q ss_pred cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
++++.|++..+... .++. .+..+++|++|++++|.+... ..+..+++|++|++++|.++... ...+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCC--EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCE
T ss_pred CCccEEECCCCccc--ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccE
Confidence 47899988776533 4444 677789999999999987432 45788999999999999874322 123678999999
Q ss_pred EEEeecCCCc--eeeeCCCCCccEEEEeecC--C--ccEEeecCCcccEEEEeeec-ccCeEEecCcccccc----eeEe
Q 009416 191 LEIRSCEGLE--SLDLVNLSNLKEIILVNTS--D--IKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLK----CLKF 259 (535)
Q Consensus 191 L~L~~c~~l~--~~~~~~l~~L~~L~l~~c~--~--l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~----~L~L 259 (535)
|++.+|.... ...+..+++|++|++++|. . +......+++|+.|+++++. .......+..+++|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 9999986532 2357778999999999883 2 11222367899999999987 222223456666676 7888
Q ss_pred eccCCChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEec
Q 009416 260 DFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILE 306 (535)
Q Consensus 260 ~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~ 306 (535)
+++.+...... .....+|+.|+++++. ++.++. ..++|+.|+++
T Consensus 185 s~n~l~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 185 SLNPMNFIQPG--AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CSSCCCEECTT--SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECC
T ss_pred CCCcccccCcc--ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEcc
Confidence 88887753222 2234589999999865 334432 23455555554
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.05 E-value=1.2e-10 Score=112.59 Aligned_cols=166 Identities=14% Similarity=0.058 Sum_probs=116.8
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
++++++++.... ...+|..+. ++++.|+|++|.+... ..+..+++|++|++++|.++.-.. .+.+++|++|
T Consensus 10 ~~l~~l~~~~~~--l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L 82 (290)
T 1p9a_G 10 ASHLEVNCDKRN--LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTL 82 (290)
T ss_dssp TTCCEEECTTSC--CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEE
T ss_pred CCccEEECCCCC--CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEE
Confidence 356666665543 346776553 6889999999887432 457788999999999887743211 2578899999
Q ss_pred EEeecCCCcee--eeCCCCCccEEEEeec--CCccEEe-ecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCC
Q 009416 192 EIRSCEGLESL--DLVNLSNLKEIILVNT--SDIKRVE-IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c--~~l~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~ 265 (535)
++++|... .+ .+..+++|++|+++++ ..+..-. ..+++|+.|+++++....+ ...+..+++|+.|++++|.++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99988643 33 3456789999999888 2222111 2678999999998872222 234678899999999999887
Q ss_pred hHHHHHhcCCCCCccEEEeecCC
Q 009416 266 DEWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 266 ~~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
.. ....+..+++|+.|+++++.
T Consensus 162 ~l-~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 162 EL-PAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CC-CTTTTTTCTTCCEEECCSSC
T ss_pred cc-CHHHhcCcCCCCEEECCCCc
Confidence 42 33446788999999999864
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.05 E-value=1.1e-10 Score=124.21 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEe
Q 009416 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~ 216 (535)
.+++|+.|++++|.+...+.+..+++|+.|+|++|.+.... . +..+++|+.|+|++|....--.+..+++|+.|+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence 34556666666666544445566666666666666553211 1 45566666666666643221144455666666666
Q ss_pred ecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcccc
Q 009416 217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (535)
Q Consensus 217 ~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~ 294 (535)
+|. +..+. ..+++|+.|++++|....+ ..+..+++|+.|+|++|.+.+... +..+++|+.|+|++|. +..++
T Consensus 118 ~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~ 191 (605)
T 1m9s_A 118 HNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDLR 191 (605)
T ss_dssp TSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBCG
T ss_pred CCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCC-CCCCh
Confidence 651 11111 1456666666666652222 345556666666666666554322 4556666666666643 22222
Q ss_pred c--CCCCCceEEeccCc
Q 009416 295 I--SSPCLKTLILECCD 309 (535)
Q Consensus 295 ~--~~~~L~~L~l~~c~ 309 (535)
. .+++|+.|++++++
T Consensus 192 ~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGTTCTTCSEEECCSEE
T ss_pred HHccCCCCCEEEccCCc
Confidence 2 33556666665543
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.05 E-value=1.2e-10 Score=110.12 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=91.9
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
+.+++++... ....+|..+. ++++.|+|++|.+... ..+..+++|++|+|++|.+.... ...+..+++|++|+
T Consensus 15 ~~~~l~~~~~--~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGK--SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTC--CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEE
T ss_pred CCeEEecCCC--CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEE
Confidence 3455555433 3346676554 6888889988887433 45678888899998888774321 22356788888888
Q ss_pred EeecCCCcee--eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeecccCeEE-ecCcccccceeEeeccCCC
Q 009416 193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 193 L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~ 265 (535)
+++|...... .+..+++|++|++++| .+..+. ..+++|+.|+++++....++. .+..+++|+.|+|++|.+.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 8887643211 2345667777777666 222221 134555555555554111111 3445555555555555544
Q ss_pred hHHHHHhcCCCCCccEEEeec
Q 009416 266 DEWLCNGISKLPLLEYLSMTK 286 (535)
Q Consensus 266 ~~~l~~l~~~~~~L~~L~L~~ 286 (535)
.... ..+..+++|+.|++.+
T Consensus 169 ~~~~-~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 169 SVPH-GAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCCT-TTTTTCTTCCEEECCS
T ss_pred ccCH-HHHhCCCCCCEEEeeC
Confidence 3211 1234445555555554
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.04 E-value=5e-10 Score=111.27 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=89.8
Q ss_pred cCCccccCCCceeEEEEeCccccC-C-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---ee
Q 009416 130 NLPEIIFYVESLHVLELSYCKLQQ-P-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DL 204 (535)
Q Consensus 130 ~lp~~l~~~~~L~~L~L~~~~~~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~ 204 (535)
.+|..+ .+++++|+|++|.+.. + ..+.++++|++|+|++|.+....-...+.++++|+++.+..+..+..+ .+
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 455433 2455666666665532 1 234556666666666654411100112344555555444444444443 23
Q ss_pred CCCCCccEEEEeecC--CccEEe-ecCCcccEEEEeeec-ccCeE-EecCccc-ccceeEeeccCCChHHHHHhcCCCCC
Q 009416 205 VNLSNLKEIILVNTS--DIKRVE-IKTSNVNALAIHQTY-LFPIE-VNVSSCG-NLKCLKFDFLPIEDEWLCNGISKLPL 278 (535)
Q Consensus 205 ~~l~~L~~L~l~~c~--~l~~~~-~~~~~L~~L~l~~~~-~~~~~-~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~~~~ 278 (535)
..+++|++|+++++. .+.... ....++..+++.++. ...++ ..+..++ .++.|++++|.+..-. .. ....++
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~-~~-~f~~~~ 178 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-NS-AFNGTQ 178 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-TT-SSTTEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-hh-hccccc
Confidence 445566666665551 111111 133344445444332 11111 1122222 3555555555554211 11 112345
Q ss_pred ccEEEeecCCCCccccc----CCCCCceEEeccCcccccccc-cCCceeeEEEcCcch----hhcccCcccceeEE
Q 009416 279 LEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI----SFSSNALSLSETSL 345 (535)
Q Consensus 279 L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~-~~p~L~~L~~~g~~~----~~~~~l~~L~~L~l 345 (535)
|+.|.+.++..++.++. ..++|+.|++++. ++..+.. ...+|+.|+..+... ..+.++++|+.+++
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 55555555555555543 1234555555543 2333321 123344444333221 22345556666555
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.99 E-value=1.3e-09 Score=108.25 Aligned_cols=213 Identities=13% Similarity=0.010 Sum_probs=148.9
Q ss_pred cCceEEEEeccCCCCccCCcc-ccCCCceeEEEEeCccccC--C-CCcccCcccceeE-eeeEeeChhHHHHHHhCCCcc
Q 009416 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQ--P-SENVKLFSLRKLA-LREVCADDQAIASLISGCPLI 188 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~--~-~~~~~l~~L~~L~-L~~~~~~~~~l~~~~~~~p~L 188 (535)
+++++|+|..+.. ..+|.. +..+++|++|+|++|.+.. + ..+.++++|+++. +..+.+..- .+..+..+++|
T Consensus 30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 5899999988653 478864 5678999999999998632 2 3456788877654 444554221 12336789999
Q ss_pred cEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEee----c-CCcccEEEEeeecccCeEEecCcccccceeEeec
Q 009416 189 EYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI----K-TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDF 261 (535)
Q Consensus 189 e~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~----~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~ 261 (535)
++|++++|...... ......++..|++.++..+..+.. . ...++.|+++++.-..++.......+|+.|.+..
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 99999999653222 233346778888888777776653 2 2468889999887433444455667899999986
Q ss_pred cCCChHHHHHhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccccc--ccCCceeeEEEcCcc
Q 009416 262 LPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHGDL 330 (535)
Q Consensus 262 ~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g~~ 330 (535)
+..........+.++++|+.|+++++ .++.++. .+.+|++|.+.++.+++.+. ...++|+.+.+....
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred CCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 54444444455788999999999986 4667766 46789999999998887776 245678877775443
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=5.2e-11 Score=119.04 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=54.0
Q ss_pred CCccccCCCceeEEEEeCccccCC------CCcccCc-ccceeEeeeEeeChh---HHHHHHhCC-CcccEEEEeecCCC
Q 009416 131 LPEIIFYVESLHVLELSYCKLQQP------SENVKLF-SLRKLALREVCADDQ---AIASLISGC-PLIEYLEIRSCEGL 199 (535)
Q Consensus 131 lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~-~L~~L~L~~~~~~~~---~l~~~~~~~-p~Le~L~L~~c~~l 199 (535)
+|..+...++|++|+|++|.+... ..+..++ +|++|+|++|.+++. .+...+... ++|++|++++|..-
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 444444456699999999887433 2335677 888999988887433 334444444 88888888888642
Q ss_pred cee------eeCCC-CCccEEEEeec
Q 009416 200 ESL------DLVNL-SNLKEIILVNT 218 (535)
Q Consensus 200 ~~~------~~~~l-~~L~~L~l~~c 218 (535)
... .+..+ ++|++|++++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCC
Confidence 211 12223 46666666555
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.94 E-value=5.4e-10 Score=106.26 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=88.9
Q ss_pred ccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEE
Q 009416 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (535)
Q Consensus 135 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~ 214 (535)
+..+++|++|++++|.+...+.+..+++|++|++++|.+++-. . +..+++|++|++++|..-+--.+.. ++|+.|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 4566888888888887755566778888888888888774322 1 6778888888888885432112222 6677777
Q ss_pred EeecCCccEEe-e-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416 215 LVNTSDIKRVE-I-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 215 l~~c~~l~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
+++| .+..+. + .+++|+.|+++++....+ ..+..+++|+.|++++|.+.+. ..+..+++|+.|+++++
T Consensus 113 L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 113 LDNN-ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCSS-CCSBSGGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred ccCC-ccCCChhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 7666 111111 1 456666666666652111 1455666666777766666554 23556666666666663
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=2.8e-10 Score=113.65 Aligned_cols=173 Identities=14% Similarity=0.042 Sum_probs=98.0
Q ss_pred cCceEEEEeccCCCCccCC-----ccccCCC-ceeEEEEeCccccCC--CCcccC-----cccceeEeeeEeeCh---hH
Q 009416 114 SEVKELVLVHWRSERRNLP-----EIIFYVE-SLHVLELSYCKLQQP--SENVKL-----FSLRKLALREVCADD---QA 177 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp-----~~l~~~~-~L~~L~L~~~~~~~~--~~~~~l-----~~L~~L~L~~~~~~~---~~ 177 (535)
+++++|+++.+... ..+ ..+..++ +|++|+|++|.+... ..+..+ ++|++|+|++|.+++ ..
T Consensus 22 ~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCGG--GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCceEEEccCCCCC--hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 35888888775432 222 3445566 788888888877432 223332 788888888887743 33
Q ss_pred HHHHHhCC-CcccEEEEeecCCCcee------eeCC-CCCccEEEEeecCCc----cEEe---ecCC-cccEEEEeeec-
Q 009416 178 IASLISGC-PLIEYLEIRSCEGLESL------DLVN-LSNLKEIILVNTSDI----KRVE---IKTS-NVNALAIHQTY- 240 (535)
Q Consensus 178 l~~~~~~~-p~Le~L~L~~c~~l~~~------~~~~-l~~L~~L~l~~c~~l----~~~~---~~~~-~L~~L~l~~~~- 240 (535)
+...+..+ ++|++|++++|..-... .+.. .++|++|++++|.-- ..+. ...+ +|++|++++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 44445555 78888888888642211 1222 247888888777211 1111 1233 77777777766
Q ss_pred ccCeEE----ecCcc-cccceeEeeccCCChHH---HHHhcCC-CCCccEEEeecCC
Q 009416 241 LFPIEV----NVSSC-GNLKCLKFDFLPIEDEW---LCNGISK-LPLLEYLSMTKCH 288 (535)
Q Consensus 241 ~~~~~~----~~~~l-~~L~~L~L~~~~~~~~~---l~~l~~~-~~~L~~L~L~~c~ 288 (535)
...... .+..+ ++|+.|+|++|.+++.. +...+.. .++|+.|+++++.
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 222111 22333 47777777777766522 2222222 3577777777753
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.86 E-value=7e-10 Score=101.44 Aligned_cols=88 Identities=20% Similarity=0.175 Sum_probs=54.1
Q ss_pred CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--e
Q 009416 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (535)
Q Consensus 128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~ 203 (535)
...+|..+ .++|++|++++|.+... ..+..+++|++|++++|.+..- ....+..+++|++|++++|....-. .
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 33555443 35788888888877433 2356788888888888776421 1223566788888888877532211 2
Q ss_pred eCCCCCccEEEEeec
Q 009416 204 LVNLSNLKEIILVNT 218 (535)
Q Consensus 204 ~~~l~~L~~L~l~~c 218 (535)
+..+++|++|+++++
T Consensus 96 ~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 96 FDKLTQLKELALNTN 110 (208)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcCccCCCEEEcCCC
Confidence 345566666666655
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=4.2e-09 Score=110.76 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=85.1
Q ss_pred hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (535)
Q Consensus 113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~ 192 (535)
..+++.|++..+... .+|..++ ++|++|+|++|.+...+ ..+++|++|++++|.++. ++. +.. +|++|+
T Consensus 58 ~~~L~~L~Ls~n~L~--~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 58 INQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHLD 126 (571)
T ss_dssp HTTCSEEECCSSCCS--CCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEE
T ss_pred cCCccEEEeCCCCCC--ccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEEE
Confidence 458899988876543 4777664 78999999999886434 668899999999988743 332 222 888998
Q ss_pred EeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCC
Q 009416 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 265 (535)
+++|...+ +.- .+++|+.|++++|. +..++..+++|+.|++++|....++. +. ++|+.|+|++|.++
T Consensus 127 Ls~N~l~~-lp~-~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE-LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCCSC-CCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred CCCCcCCC-CCC-cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence 88886432 322 45677777777661 22222244566666666655222222 32 55566666555544
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.84 E-value=1.6e-09 Score=102.23 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=53.2
Q ss_pred CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEEe
Q 009416 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILV 216 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~ 216 (535)
.+.++++++++.+...+.. -.++|++|+++++.+.... ...+..+++|++|++++|...... .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 5677899999887543221 2378999999999874322 123678999999999998643322 24556777777776
Q ss_pred ec
Q 009416 217 NT 218 (535)
Q Consensus 217 ~c 218 (535)
+|
T Consensus 92 ~n 93 (251)
T 3m19_A 92 NN 93 (251)
T ss_dssp TS
T ss_pred CC
Confidence 66
No 106
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.82 E-value=2.7e-09 Score=73.79 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=33.9
Q ss_pred CCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhc
Q 009416 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ 47 (535)
Q Consensus 8 ~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~ 47 (535)
+.+.++.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999998643
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.81 E-value=8.6e-10 Score=104.85 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=93.0
Q ss_pred CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec
Q 009416 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (535)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c 218 (535)
.+++.++++++.+...+....+++|++|+++++.++.- + .+..+++|++|++++|...+-..+..+++|+.|++++|
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 45566667777665445567899999999999987432 2 36789999999999986433224677888999988888
Q ss_pred --CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416 219 --SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 219 --~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 287 (535)
..+..+.. ++|+.|+++++..... ..+..+++|+.|++++|.+++.. .+..+++|+.|+++++
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTS
T ss_pred ccCCcCcccc--CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCC
Confidence 22222222 6777777777762221 24666777777777777666531 2455667777777664
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=2.1e-09 Score=94.58 Aligned_cols=104 Identities=26% Similarity=0.232 Sum_probs=76.6
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++.|++..+......+|..+..+++|++|++++|.+.....+..+++|++|++++|.+... ++..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 578999998876544478888788899999999999886557778899999999999988542 4455667899999999
Q ss_pred eecCCCc--e-eeeCCCCCccEEEEeec
Q 009416 194 RSCEGLE--S-LDLVNLSNLKEIILVNT 218 (535)
Q Consensus 194 ~~c~~l~--~-~~~~~l~~L~~L~l~~c 218 (535)
++|.... . -.+..+++|+.|++++|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 9986432 1 13444555555555554
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=1.2e-09 Score=96.30 Aligned_cols=127 Identities=20% Similarity=0.139 Sum_probs=80.4
Q ss_pred CCceeEEEEeCcccc---CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccE
Q 009416 138 VESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE 212 (535)
Q Consensus 138 ~~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~ 212 (535)
.++|++|++++|.+. .+..+..+++|++|++++|.++.. ..+..+++|++|++++|.....+ .+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------- 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAE------- 92 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHh-------
Confidence 377888888888775 334457788888888888877432 33566777777777777543311 111
Q ss_pred EEEeecCCccEEeecCCcccEEEEeeecccCe--EEecCcccccceeEeeccCCChHHH--HHhcCCCCCccEEEeecCC
Q 009416 213 IILVNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 213 L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l--~~l~~~~~~L~~L~L~~c~ 288 (535)
.+++|+.|+++++....+ ...+..+++|+.|++++|.++.... ...+..+++|+.|++.+|.
T Consensus 93 --------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 93 --------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp --------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred --------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 244455555554441111 1456677888888888877665322 2346778888888888764
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=2e-09 Score=92.64 Aligned_cols=104 Identities=30% Similarity=0.310 Sum_probs=78.6
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++.|++..+......+|..+..+++|++|++++|.+.....+..+++|++|++++|.++.. ++..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 578999988876543478888888999999999999886557778899999999999988543 4555677999999999
Q ss_pred eecCCCce---eeeCCCCCccEEEEeec
Q 009416 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (535)
Q Consensus 194 ~~c~~l~~---~~~~~l~~L~~L~l~~c 218 (535)
++|...+. ..+..+++|++|++++|
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 99874331 13444556666665554
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.70 E-value=9.4e-09 Score=95.46 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=83.5
Q ss_pred CCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (535)
Q Consensus 127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-- 202 (535)
....+|..+. ++|++|+|++|.+... ..+..+++|++|+|++|.++.- ....+..+++|+.|+|++|... .+
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~-~l~~ 105 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLT-VLPS 105 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCC-ccCh
Confidence 3446776543 8899999999888443 4567889999999998887321 1123567888899988888532 22
Q ss_pred -eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccE
Q 009416 203 -DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (535)
Q Consensus 203 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 281 (535)
.+..+++|+.|+++++ ....++..+..+++|+.|+|++|.+..... ..+..+++|+.
T Consensus 106 ~~~~~l~~L~~L~Ls~N---------------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~ 163 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCN---------------------KLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTH 163 (229)
T ss_dssp TTTTTCTTCCEEECCSS---------------------CCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred hHhCcchhhCeEeccCC---------------------cccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCE
Confidence 2344566666666554 311223344556666666666666553221 23455667777
Q ss_pred EEeecC
Q 009416 282 LSMTKC 287 (535)
Q Consensus 282 L~L~~c 287 (535)
|++.++
T Consensus 164 L~l~~N 169 (229)
T 3e6j_A 164 AYLFGN 169 (229)
T ss_dssp EECTTS
T ss_pred EEeeCC
Confidence 777664
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.69 E-value=8.7e-10 Score=94.98 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=37.7
Q ss_pred CceeEEEEeCcccc---CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCC
Q 009416 139 ESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG 198 (535)
Q Consensus 139 ~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~ 198 (535)
++|++|++++|.+. .+..+..+++|++|++++|.++.. ..+..+++|++|++++|..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc
Confidence 67788888887765 334456777788888877766432 3355667777777766653
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.67 E-value=5.9e-09 Score=96.18 Aligned_cols=144 Identities=15% Similarity=0.064 Sum_probs=79.5
Q ss_pred eEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 117 KELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 117 ~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
+.+++.... ...+|..+. +.+++|+|++|.+... ..+..+++|++|+|++|.++.-. ...+..+++|++|+|
T Consensus 14 ~~l~~s~n~--l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQK--LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSC--CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEEC
T ss_pred CEeEeCCCC--cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEEC
Confidence 344444332 335666543 4567888888877432 23567888888888888763211 123567788888888
Q ss_pred eecCCCcee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHH
Q 009416 194 RSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (535)
Q Consensus 194 ~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 270 (535)
++|....-. .+..+++|++|+++++ . ....+..+.++++|+.|+|++|.++.....
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSN---------------------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTS---------------------CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCC---------------------cCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 877543211 2444555555555544 2 111123345555666666665555443222
Q ss_pred HhcCCCCCccEEEeecC
Q 009416 271 NGISKLPLLEYLSMTKC 287 (535)
Q Consensus 271 ~l~~~~~~L~~L~L~~c 287 (535)
. +..+++|+.|++.++
T Consensus 148 ~-~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 148 A-FDTLHSLSTLNLLAN 163 (220)
T ss_dssp T-TTTCTTCCEEECCSC
T ss_pred H-hcCCCCCCEEEecCc
Confidence 2 445566666666553
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.67 E-value=1.4e-08 Score=93.63 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=80.9
Q ss_pred CCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (535)
Q Consensus 127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-- 202 (535)
....+|..+. ++|++|+|++|.+... ..+..+++|++|+|++|.++.-. +..+.++++|++|+|++|... .+
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~-~l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKIT-ELPK 97 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCC-ccCH
Confidence 3446676543 6888999998877432 35677888999999888774321 223567888888888887543 22
Q ss_pred -eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCcc
Q 009416 203 -DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE 280 (535)
Q Consensus 203 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~ 280 (535)
.+..+++|+.|+++++ . ....+..+..+++|+.|+|++|.+..... ..+..+++|+
T Consensus 98 ~~f~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~ 155 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNAN---------------------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQ 155 (220)
T ss_dssp TTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCC
T ss_pred hHccCCCCCCEEECCCC---------------------CCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCC
Confidence 2344556666665554 2 11112234555666666666665554322 1244566666
Q ss_pred EEEeecC
Q 009416 281 YLSMTKC 287 (535)
Q Consensus 281 ~L~L~~c 287 (535)
.|++.++
T Consensus 156 ~L~L~~N 162 (220)
T 2v9t_B 156 TMHLAQN 162 (220)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 6666653
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.64 E-value=5e-09 Score=95.71 Aligned_cols=102 Identities=22% Similarity=0.108 Sum_probs=72.8
Q ss_pred cCceEEEEeccCCCCccCCcc-ccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
+++++|++..+... .+|.. +..+++|++|++++|.+... ..+..+++|++|++++|.++.- ....+..+++|++
T Consensus 28 ~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCE
Confidence 47888988876543 45554 56789999999999988543 3357899999999999987421 1233578999999
Q ss_pred EEEeecCCCcee--eeCCCCCccEEEEeec
Q 009416 191 LEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (535)
Q Consensus 191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c 218 (535)
|++++|....-. .+..+++|+.|++++|
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 999998643211 2445667777777665
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.62 E-value=1.3e-08 Score=93.79 Aligned_cols=131 Identities=14% Similarity=0.064 Sum_probs=89.3
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
..+++|++..+......-+..+..+++|++|+|++|.+... ..+..+++|++|+|++|.++.. ....+..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEE
Confidence 46788888876544322223467889999999999988433 4678999999999999988432 22346789999999
Q ss_pred EEeecCCCce--eeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCCh
Q 009416 192 EIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIED 266 (535)
Q Consensus 192 ~L~~c~~l~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~ 266 (535)
++++|..... -.+..+++|+.|++++| . ....+..+..+++|+.|++++|.+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDN---------------------QITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTS---------------------CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCC---------------------cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9999975432 13445566666665554 3 11113345667778888887776643
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.59 E-value=4.1e-08 Score=103.21 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=111.8
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
++++.|+++.+... .+| ..+++|++|+|++|.+...+.+.. +|++|++++|.++. ++. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM--LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence 57999999887654 677 346999999999998854433333 99999999998853 222 6889999999
Q ss_pred eecCCCceeeeCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCccccc-------ceeEeeccCC
Q 009416 194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNL-------KCLKFDFLPI 264 (535)
Q Consensus 194 ~~c~~l~~~~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L-------~~L~L~~~~~ 264 (535)
++|... .+.- .+++|+.|++++| ..+.. +. ++|+.|++++|....++. +.. +| +.|+|++|.+
T Consensus 148 s~N~l~-~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 148 DNNQLT-MLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp CSSCCS-CCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCC
T ss_pred CCCccC-cCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcc
Confidence 998643 2322 4689999999998 33333 23 899999999988333344 433 66 9999999888
Q ss_pred ChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (535)
Q Consensus 265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l 293 (535)
+. .+.. +..+++|+.|++++++..+.+
T Consensus 220 ~~-lp~~-l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 220 TH-IPEN-ILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CC-CCGG-GGGSCTTEEEECCSSSCCHHH
T ss_pred ee-cCHH-HhcCCCCCEEEeeCCcCCCcC
Confidence 74 2333 344889999999987654433
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.59 E-value=1.4e-08 Score=101.16 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=56.3
Q ss_pred CccCCccccCCCceeEEEEeCccccCC--CCcc-cCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (535)
Q Consensus 128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~-~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-- 202 (535)
...+|..+. +.++.|+|++|.+... ..+. .+++|++|+|++|.++.-. ...+..+++|++|+|++|.. ..+
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~ 105 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL-HTLDE 105 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC-CcCCH
Confidence 345665443 4678888888877432 3344 7888888888888774221 12356788888888888763 333
Q ss_pred -eeCCCCCccEEEEeec
Q 009416 203 -DLVNLSNLKEIILVNT 218 (535)
Q Consensus 203 -~~~~l~~L~~L~l~~c 218 (535)
.+..+++|+.|++++|
T Consensus 106 ~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNN 122 (361)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhCCCcCCCEEECCCC
Confidence 2445667777777665
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.59 E-value=2.2e-09 Score=97.29 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=83.7
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEe
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~ 194 (535)
.++...+.........+|..+..+++|++|++++|.+...+.+..+++|++|++++|.++. ++..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECc
Confidence 3444444443333445555777788888888888877544567778888888888887742 23334456778888887
Q ss_pred ecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeE--EecCcccccceeEeeccCCChHH----
Q 009416 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEW---- 268 (535)
Q Consensus 195 ~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~---- 268 (535)
+|....--.+. .+++|+.|+++++.....+ ..+..+++|+.|++++|.+.+..
T Consensus 102 ~N~l~~l~~~~---------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 102 YNQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp EEECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred CCcCCcCCccc---------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 77432100111 2344444444444411111 23556667777777766654431
Q ss_pred -----HHHhcCCCCCccEEE
Q 009416 269 -----LCNGISKLPLLEYLS 283 (535)
Q Consensus 269 -----l~~l~~~~~~L~~L~ 283 (535)
....+..+++|+.|+
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC
T ss_pred chHHHHHHHHHhCCCcEEEC
Confidence 223345677777765
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.58 E-value=1.9e-08 Score=92.68 Aligned_cols=142 Identities=11% Similarity=0.078 Sum_probs=90.7
Q ss_pred eEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeec
Q 009416 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNT 218 (535)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c 218 (535)
+.++.+++.+...|. .-.++|+.|++++|.+..-. ...+..+++|++|+|++|... .+ .+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~- 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG- 89 (220)
T ss_dssp TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS-
T ss_pred CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC-
Confidence 456777776643322 12378999999998774211 123567888999998888643 22 344445555555544
Q ss_pred CCccEEeecCCcccEEEEeeecccCeE-EecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc--
Q 009416 219 SDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-- 295 (535)
Q Consensus 219 ~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-- 295 (535)
+....++ ..+.++++|+.|+|++|.+....... +..+++|+.|+++++.. +.++.
T Consensus 90 --------------------N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l-~~~~~~~ 147 (220)
T 2v9t_B 90 --------------------NKITELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKL-QTIAKGT 147 (220)
T ss_dssp --------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCC-SCCCTTT
T ss_pred --------------------CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcC-CEECHHH
Confidence 4411122 23578899999999999887644333 67899999999998653 33332
Q ss_pred --CCCCCceEEeccCc
Q 009416 296 --SSPCLKTLILECCD 309 (535)
Q Consensus 296 --~~~~L~~L~l~~c~ 309 (535)
..++|+.|++.+.+
T Consensus 148 ~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEEeCCCC
Confidence 34678888887643
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.54 E-value=3.5e-08 Score=91.60 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=92.6
Q ss_pred eeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEee
Q 009416 141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN 217 (535)
Q Consensus 141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~ 217 (535)
-+.++.+++.+...+. +-.++|++|+|++|.+.... +..+..+++|++|+|++|.. ..+ .+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 3457777776643322 23489999999999884321 23367889999999998864 333 134455555555554
Q ss_pred cCCccEEeecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc-
Q 009416 218 TSDIKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI- 295 (535)
Q Consensus 218 c~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~- 295 (535)
| ....+ ...+..+++|+.|++++|.+.. +...+..+++|+.|+++++. +..++.
T Consensus 98 N---------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~~ 153 (229)
T 3e6j_A 98 N---------------------QLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ-LKSIPHG 153 (229)
T ss_dssp S---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC-CCCCCTT
T ss_pred C---------------------cCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc-CCccCHH
Confidence 4 31111 2235788999999999998873 22235788999999999863 444442
Q ss_pred ---CCCCCceEEeccCc
Q 009416 296 ---SSPCLKTLILECCD 309 (535)
Q Consensus 296 ---~~~~L~~L~l~~c~ 309 (535)
..++|+.|++.+.+
T Consensus 154 ~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECTTSC
T ss_pred HHhCCCCCCEEEeeCCC
Confidence 34688888887643
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.54 E-value=1.8e-08 Score=89.41 Aligned_cols=59 Identities=7% Similarity=-0.067 Sum_probs=34.7
Q ss_pred cCCCceeEEEEeCccccCCCCcccCc-ccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416 136 FYVESLHVLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE 197 (535)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~ 197 (535)
..+++|++|++++|.+...+.+..+. +|++|++++|.++.- ..+..+++|++|++++|.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence 34566777777777664333444443 677777777666431 224556666666666664
No 123
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=1.4e-07 Score=82.44 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=72.8
Q ss_pred cCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEe-eChhHHHHHHhC---CCcccEEEEeecCCCcee-
Q 009416 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISG---CPLIEYLEIRSCEGLESL- 202 (535)
Q Consensus 130 ~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~~---~p~Le~L~L~~c~~l~~~- 202 (535)
.+|.......+|++|++++|.+... ..+..+++|++|+|++|. +++..+..+... |++|++|+|++|..++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 5665443456899999999986432 455789999999999996 688888886542 679999999999987543
Q ss_pred --eeCCCCCccEEEEeecCCccE
Q 009416 203 --DLVNLSNLKEIILVNTSDIKR 223 (535)
Q Consensus 203 --~~~~l~~L~~L~l~~c~~l~~ 223 (535)
.+..+++|++|++++|+.+..
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 455688999999999876654
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.42 E-value=3.5e-08 Score=87.46 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=75.6
Q ss_pred CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEe----ecCCc
Q 009416 155 SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE----IKTSN 230 (535)
Q Consensus 155 ~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~ 230 (535)
+...++++|++|++++|.++. ++.+...+|+|++|++++|...+--.+..+++|++|++++| .+..++ ..+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 455678899999999998742 23334445699999999986433225556677888887776 222332 24566
Q ss_pred ccEEEEeeecccCeEE--ecCcccccceeEeeccCCChHH--HHHhcCCCCCccEEEeecC
Q 009416 231 VNALAIHQTYLFPIEV--NVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMTKC 287 (535)
Q Consensus 231 L~~L~l~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~--l~~l~~~~~~L~~L~L~~c 287 (535)
|+.|+++++....++. .+..+++|+.|++++|.+.... ....+..+|+|+.|++.++
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6666666655222222 4455566666666655554311 0112344555665555553
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=2.3e-07 Score=91.13 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=17.2
Q ss_pred CcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416 160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE 197 (535)
Q Consensus 160 l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~ 197 (535)
+++|++|+|.. .+..- -...+.+|++|++|.+..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I-~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNI-EDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp CTTCCC-CBCT-TCCEE-CTTTTTTCTTCCEEEBCCSS
T ss_pred cCCCcEEECCc-cccch-hHHHhhcCcccceEEcCCCC
Confidence 66666666655 22100 01124556666666666553
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.39 E-value=8.8e-08 Score=95.40 Aligned_cols=102 Identities=22% Similarity=0.107 Sum_probs=74.4
Q ss_pred cCceEEEEeccCCCCccCCccc-c-CCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416 114 SEVKELVLVHWRSERRNLPEII-F-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l-~-~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le 189 (535)
..++.|+|+.+.. ..++... . .+++|++|+|++|.+... ..+..+++|++|+|++|.+..- ....+..+++|+
T Consensus 39 ~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence 4678888887643 3455543 3 789999999999988432 4578999999999999987432 123367899999
Q ss_pred EEEEeecCCCce--eeeCCCCCccEEEEeec
Q 009416 190 YLEIRSCEGLES--LDLVNLSNLKEIILVNT 218 (535)
Q Consensus 190 ~L~L~~c~~l~~--~~~~~l~~L~~L~l~~c 218 (535)
+|+|++|....- -.+..+++|+.|++++|
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 999999975322 14556777888877776
No 127
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.36 E-value=1.6e-06 Score=85.90 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=108.4
Q ss_pred HHHHHHHHhhcCCCCCceeEEEEEEecCCCC--CChhhHHHHHH-HHHhcCceEEEEeccCCC--------CccCCcccc
Q 009416 68 LTSLEPALLNRQRKMISIKKFSLELDLINSP--ENASLAGRCLG-LAIESEVKELVLVHWRSE--------RRNLPEIIF 136 (535)
Q Consensus 68 ~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~wl~-~~~~~~l~~L~L~~~~~~--------~~~lp~~l~ 136 (535)
.+.+.+++.. .....++.+.+.... ++ .....+..++. ....++|+.|.+...... ...++..+.
T Consensus 94 ~~~~~~fl~~--~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~ 169 (362)
T 2ra8_A 94 VNLMDKILKD--KKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD 169 (362)
T ss_dssp CCHHHHHHHC--TTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred HHHHHHHhcC--CCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence 3445555532 233567777666332 11 11123444443 223479999998643211 113445556
Q ss_pred CCCceeEEEEeCcc-ccCCCCcccCcccceeEeeeEeeChhHHHHHH-hCCCcccEEEEeecCC-------Ccee----e
Q 009416 137 YVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLI-SGCPLIEYLEIRSCEG-------LESL----D 203 (535)
Q Consensus 137 ~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~-~~~p~Le~L~L~~c~~-------l~~~----~ 203 (535)
.+|+|+.|+|++|. +..++ + .+++|++|+|..+.++...+..+. ..+|+|++|+|..+.. +..+ .
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 78999999999873 33323 3 489999999998888777776654 3699999999864311 1111 1
Q ss_pred eCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc---CCCCCcc
Q 009416 204 LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLE 280 (535)
Q Consensus 204 ~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~---~~~~~L~ 280 (535)
...+|+|++|.+.+|....... ........+++|++|+|+.|.+.+.....+. .++++|+
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~-----------------~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVV-----------------EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHH-----------------HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred cCCCCCcCEEeCCCCCCchHHH-----------------HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 1234566666655542110000 0000012356677777777766665444433 2356677
Q ss_pred EEEeecC
Q 009416 281 YLSMTKC 287 (535)
Q Consensus 281 ~L~L~~c 287 (535)
.|+++.|
T Consensus 311 ~L~L~~n 317 (362)
T 2ra8_A 311 FINMKYN 317 (362)
T ss_dssp EEECCSB
T ss_pred EEECCCC
Confidence 7776654
No 128
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=2.1e-08 Score=100.15 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=83.8
Q ss_pred HHhcCceEEEEeccCCCCc---cCCccccC-CCceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHH--
Q 009416 111 AIESEVKELVLVHWRSERR---NLPEIIFY-VESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASL-- 181 (535)
Q Consensus 111 ~~~~~l~~L~L~~~~~~~~---~lp~~l~~-~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~-- 181 (535)
...++++.|++..+..... .+...+.. +++|++|+|++|.+... .....+++|++|+|++|.+++.....+
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3456788888776543221 12222222 36788888888766321 122346678888888887765444332
Q ss_pred -H-hCCCcccEEEEeecCCCc----ee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccc
Q 009416 182 -I-SGCPLIEYLEIRSCEGLE----SL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGN 253 (535)
Q Consensus 182 -~-~~~p~Le~L~L~~c~~l~----~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 253 (535)
+ ..+++|++|+|++|..-. .+ .+...++|++|++++|. +.... ...+...+...++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g---------------~~~L~~~L~~~~~ 212 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEG---------------LELLAAQLDRNRQ 212 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHH---------------HHHHHHHGGGCSC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHH---------------HHHHHHHHhcCCC
Confidence 2 346777777777775311 01 11233445555444431 10000 0001122344556
Q ss_pred cceeEeeccCCChHHHHH---hcCCCCCccEEEeecCC
Q 009416 254 LKCLKFDFLPIEDEWLCN---GISKLPLLEYLSMTKCH 288 (535)
Q Consensus 254 L~~L~L~~~~~~~~~l~~---l~~~~~~L~~L~L~~c~ 288 (535)
|+.|+|++|.+++..... .+...++|++|+|+++.
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 777777777776644332 23345667777776653
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=4.4e-07 Score=89.05 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=12.6
Q ss_pred hhHHhhhhhccCcccceEE
Q 009416 430 IANVLDGLLWTSPHAEMVS 448 (535)
Q Consensus 430 l~~l~~~ll~~~p~Le~L~ 448 (535)
+..+....|..|++|++++
T Consensus 309 i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 309 ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTCTTCCCCEEE
T ss_pred cCccchhhhcCCcchhhhc
Confidence 3445555777778887775
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.27 E-value=2e-07 Score=83.82 Aligned_cols=123 Identities=18% Similarity=0.112 Sum_probs=71.7
Q ss_pred eEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC-C--CcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 117 KELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-S--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 117 ~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~--~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
+.+++... ....+|..+. ++|++|++++|.+... + .+..+++|++|+|++|.++... +..+..+++|++|+|
T Consensus 11 ~~l~~s~~--~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGR--GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTS--CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred CEEEcCCC--CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEEC
Confidence 44554443 3346776554 3888888888877433 2 2678888888888888774321 223567788888888
Q ss_pred eecCCCcee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416 194 RSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 194 ~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~ 265 (535)
++|...... .+..+++|++|+++++ . ....+..+..+++|+.|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDN---------------------QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSS---------------------CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCC---------------------cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 887543211 2334455555554443 2 1111233455666666666666554
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.20 E-value=1.5e-07 Score=84.99 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=68.0
Q ss_pred CcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEE
Q 009416 156 ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALA 235 (535)
Q Consensus 156 ~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~ 235 (535)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|.. ..+......+++|+.|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l--------------------~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI--------------------KKIENLDAVADTLEELW 99 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE--------------------CSCSSHHHHHHHCSEEE
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc--------------------ccccchhhcCCcCCEEE
Confidence 34566667777776666633 12 244556666666666531 11111112346777888
Q ss_pred EeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416 236 IHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (535)
Q Consensus 236 l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 288 (535)
++++....++ .+..+++|+.|++++|.+........+..+++|+.|++.+++
T Consensus 100 L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 100 ISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 8777622233 577889999999999988864432346788999999998864
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=3.8e-07 Score=96.21 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=50.3
Q ss_pred ccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeec--CCccEEeecCCcccEEEEe
Q 009416 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIH 237 (535)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~ 237 (535)
.|+.|+|++|.++. ++. +..+++|+.|+|++|... .+ .+..+++|+.|++++| ..+. ....+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 47777777776643 233 566777777777777532 22 3444555555555554 1111 00133444444444
Q ss_pred eec-ccCe-EEecCcccccceeEeeccCCC
Q 009416 238 QTY-LFPI-EVNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 238 ~~~-~~~~-~~~~~~l~~L~~L~L~~~~~~ 265 (535)
+|. .... +..++.+++|+.|+|++|.++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 444 1111 334445555555555555443
No 133
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=1e-06 Score=87.20 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=65.3
Q ss_pred HHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCc----cEEee-cCCcccEEEEeeec---ccC--e---
Q 009416 178 IASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDI----KRVEI-KTSNVNALAIHQTY---LFP--I--- 244 (535)
Q Consensus 178 l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l----~~~~~-~~~~L~~L~l~~~~---~~~--~--- 244 (535)
+..++..+|+|++|.|++|..+.-..+. +++|++|++..|.-- ..+.. .+|+|++|++..+. .+. +
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 5566788999999999887433211222 588999999876311 11111 57888888875321 100 0
Q ss_pred EEec--CcccccceeEeeccCCChHHHHHhc--CCCCCccEEEeecC
Q 009416 245 EVNV--SSCGNLKCLKFDFLPIEDEWLCNGI--SKLPLLEYLSMTKC 287 (535)
Q Consensus 245 ~~~~--~~l~~L~~L~L~~~~~~~~~l~~l~--~~~~~L~~L~L~~c 287 (535)
...+ ..+|+|+.|.|.++.+.+.....+. ..+|+|++|+|+.+
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 0111 3477888888887777654433322 35677777777653
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.15 E-value=1.1e-06 Score=78.84 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=73.9
Q ss_pred cCceEEEEeccCCCCccCCc--cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416 114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le 189 (535)
.++++|.+..+... .++. .+..+++|++|+|++|.+... ..+..+++|++|+|++|.++... ...+..+++|+
T Consensus 29 ~~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCC
T ss_pred CCCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCC
Confidence 38899998876543 4554 377889999999999988543 56789999999999999884322 22356789999
Q ss_pred EEEEeecCCCcee--eeCCCCCccEEEEeec
Q 009416 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (535)
Q Consensus 190 ~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c 218 (535)
+|++++|...+.. .+..+++|++|+++++
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 9999999654322 3445566666665554
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.5e-06 Score=75.93 Aligned_cols=94 Identities=14% Similarity=0.252 Sum_probs=64.9
Q ss_pred cccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec
Q 009416 161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY 240 (535)
Q Consensus 161 ~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~ 240 (535)
..|+.|+++++.+++..+..+ .+|++|++|+|++|..++...+..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~----------------------------- 110 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE----------------------------- 110 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCH-----------------------------
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcc-----------------------------
Confidence 579999999999988888764 78999999999999876543222110000
Q ss_pred ccCeEEecCcccccceeEeecc-CCChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416 241 LFPIEVNVSSCGNLKCLKFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (535)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l 293 (535)
..+++|++|+|++| .+++..+.. +..+++|++|++++|+.++..
T Consensus 111 --------~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 111 --------NLQKSMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp --------HHHHHCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCCH
T ss_pred --------cccCCCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCch
Confidence 01245666666655 377777777 456888888888888776653
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.13 E-value=1.5e-06 Score=78.01 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=65.8
Q ss_pred CccCCccccCCCceeEEEEeCccccC-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--ee
Q 009416 128 RRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (535)
Q Consensus 128 ~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~ 204 (535)
...+|..+. ++|++|+|++|.+.. +..+..+++|++|+|++|.++.-. ...+.++++|++|+|++|....-. .+
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 345665443 577888888877743 255667778888888877763211 123566777777777777532211 23
Q ss_pred CCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeE-EecCcccccceeEeeccCCC
Q 009416 205 VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIE 265 (535)
Q Consensus 205 ~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~ 265 (535)
..+++|+.|+++++ ....++ ..+..+++|+.|++++|.+.
T Consensus 99 ~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN---------------------DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCTTCCEEECCSS---------------------CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEEECCCC---------------------CCCeeChhhhhcCccccEEEeCCCCee
Confidence 34455555555444 311111 23556777777777776653
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.12 E-value=9e-08 Score=104.20 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=67.8
Q ss_pred CccccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCC
Q 009416 132 PEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLS 208 (535)
Q Consensus 132 p~~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~ 208 (535)
|..+..+++|+.|+|++|.+. .+..+..+++|++|+|++|.++ .++..+..+++|+.|+|++|... .+ .+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-- 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-- 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG--
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC--
Confidence 444556677777777777663 3345566777777777777664 22333566777777777776532 22 2233
Q ss_pred CccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHH
Q 009416 209 NLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL 269 (535)
Q Consensus 209 ~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l 269 (535)
+++|+.|++++|....++..++.+++|+.|+|++|.+++..+
T Consensus 292 -------------------l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 292 -------------------CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp -------------------GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred -------------------CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 445555555555533345567888888888888888876433
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=1.7e-07 Score=93.51 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=91.1
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCc-----ccCcccceeEeeeEeeChhH---HHHHHh
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SEN-----VKLFSLRKLALREVCADDQA---IASLIS 183 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~-----~~l~~L~~L~L~~~~~~~~~---l~~~~~ 183 (535)
+++++|+|+.+......+......+++|++|+|++|.+... ..+ ...++|++|+|++|.+++.. +...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 58999999887644333332223357899999999987432 111 24688999999999985544 444457
Q ss_pred CCCcccEEEEeecCCCce----e--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCccccccee
Q 009416 184 GCPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257 (535)
Q Consensus 184 ~~p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 257 (535)
.+++|++|+|++|..-.. + .+...++|+.|++++|. +... ....+...+...++|++|
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~---------------g~~~l~~~L~~~~~L~~L 244 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT---------------AALALARAAREHPSLELL 244 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH---------------HHHHHHHHHHHCSSCCEE
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH---------------HHHHHHHHHHhCCCCCEE
Confidence 899999999999974211 1 23334566666666551 1000 000111224456889999
Q ss_pred EeeccCCChHHHHHh
Q 009416 258 KFDFLPIEDEWLCNG 272 (535)
Q Consensus 258 ~L~~~~~~~~~l~~l 272 (535)
+|++|.+++.....+
T Consensus 245 ~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 245 HLYFNELSSEGRQVL 259 (372)
T ss_dssp ECTTSSCCHHHHHHH
T ss_pred eccCCCCCHHHHHHH
Confidence 999999988766553
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=1.7e-06 Score=91.31 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=55.2
Q ss_pred CceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.++.|+++.+... .+|. +..+++|+.|+|++|.+. .|..++.+++|++|+|++|.++. ++ .++.+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC--CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 4666666654332 3555 666677777777776663 33456667777777777766643 22 3566667777777
Q ss_pred eecCCCce---eeeCCCCCccEEEEeec
Q 009416 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (535)
Q Consensus 194 ~~c~~l~~---~~~~~l~~L~~L~l~~c 218 (535)
++|...+. -.+..+++|+.|++++|
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 66643221 12334444555444444
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.07 E-value=2.8e-06 Score=76.31 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=75.2
Q ss_pred cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L 191 (535)
+++++|++..+... .+|..+..+++|++|+|++|.+... ..+..+++|++|+|++|.++.-. ...+..+++|+.|
T Consensus 31 ~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence 47899998876543 7888888899999999999998543 45789999999999999884322 2236789999999
Q ss_pred EEeecCCCcee---eeCCCCCccEEEEeec
Q 009416 192 EIRSCEGLESL---DLVNLSNLKEIILVNT 218 (535)
Q Consensus 192 ~L~~c~~l~~~---~~~~l~~L~~L~l~~c 218 (535)
+|++|... .+ .+..+++|+.|++.++
T Consensus 108 ~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 108 SLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp ECCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence 99998643 22 2344556666655543
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.00 E-value=2.2e-06 Score=75.73 Aligned_cols=67 Identities=24% Similarity=0.154 Sum_probs=41.3
Q ss_pred CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE 197 (535)
Q Consensus 128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~ 197 (535)
...+|..+. ++|++|++++|.+... ..+..+++|++|++++|.++.- ....+..+++|++|++++|.
T Consensus 19 l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC
Confidence 335554332 6788888888777433 2346777888888877766321 11224567777777777764
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.99 E-value=4.3e-06 Score=73.79 Aligned_cols=121 Identities=13% Similarity=0.071 Sum_probs=55.7
Q ss_pred eEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeec
Q 009416 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNT 218 (535)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c 218 (535)
+.++++++.+...+ ....++|++|+++++.++.- ....+..+++|++|++++|... .+ .+..+++|+.|+++++
T Consensus 10 ~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCC
Confidence 34444444442221 12234555555555554211 1112344555555555555322 22 1334555555555555
Q ss_pred CCccEEe----ecCCcccEEEEeeecccCeEE-ecCcccccceeEeeccCCCh
Q 009416 219 SDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED 266 (535)
Q Consensus 219 ~~l~~~~----~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~ 266 (535)
. +..+. ..+++|+.|+++++....++. .+..+++|+.|++++|.+..
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 K-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 1 11111 134555666655555212222 24556777777777776654
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.93 E-value=1.9e-05 Score=79.39 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=42.1
Q ss_pred CCcccEEEEeecCCCcee---eeCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCcccccceeE
Q 009416 185 CPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLK 258 (535)
Q Consensus 185 ~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 258 (535)
|.+|+.+.|..+ +..+ ++.++++|+.+.+... +..+. +...+|+.+.+...-...-...|.+|++|+.+.
T Consensus 202 ~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEE
Confidence 345555555422 3222 3444555555555432 22222 122455555553222111122355566666666
Q ss_pred eeccCCCh----HHHHHhcCCCCCccEEEee
Q 009416 259 FDFLPIED----EWLCNGISKLPLLEYLSMT 285 (535)
Q Consensus 259 L~~~~~~~----~~l~~l~~~~~~L~~L~L~ 285 (535)
+.++.... ......+.+|++|+.+.+.
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 65443320 1112234556666666665
No 144
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.93 E-value=5.4e-06 Score=78.33 Aligned_cols=38 Identities=34% Similarity=0.656 Sum_probs=35.0
Q ss_pred CcCCCCCHHHHHHHHcCCChhHHH-HHhhhhhhhHHhhc
Q 009416 10 DGISTLPEPILHHILSFLPFKEVA-QTCLLSKRWKQVWQ 47 (535)
Q Consensus 10 D~is~LPdeiL~~Ils~L~~~d~~-r~s~vskrWr~lw~ 47 (535)
..+..||+|++.+||++||.++++ ++++|||+||.+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 478899999999999999999999 99999999998743
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.89 E-value=2.1e-06 Score=93.34 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=62.4
Q ss_pred hCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCccccccee
Q 009416 183 SGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257 (535)
Q Consensus 183 ~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 257 (535)
..++.|+.|+|++|... .+ .+..+++|++|++++|. +..++ ..+++|+.|++++|....++..++++++|+.|
T Consensus 221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 34444445544444322 11 12234445555554441 11111 24567777777777633556778899999999
Q ss_pred EeeccCCChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (535)
Q Consensus 258 ~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~ 291 (535)
+|++|.++. .+.. +.++++|+.|+|+++...+
T Consensus 299 ~L~~N~l~~-lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 299 YFFDNMVTT-LPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ECCSSCCCC-CCSS-TTSCTTCCCEECTTSCCCS
T ss_pred ECCCCCCCc-cChh-hhcCCCccEEeCCCCccCC
Confidence 999998862 2333 7788999999999876443
No 146
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.83 E-value=4.4e-06 Score=77.89 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=32.7
Q ss_pred cCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416 11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (535)
Q Consensus 11 ~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l 45 (535)
.+++||+||+.+||+||+++|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999964
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.75 E-value=2e-05 Score=69.03 Aligned_cols=97 Identities=19% Similarity=0.109 Sum_probs=62.3
Q ss_pred ceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416 116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (535)
Q Consensus 116 l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L 193 (535)
.+.++++.. ....+|..+. ++|++|+|++|.+... ..+..+++|++|+|++|.++.- ....+..+++|++|+|
T Consensus 11 ~~~l~~s~n--~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGK--SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTS--CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCC--CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEEC
Confidence 344555443 3345776553 7889999999888443 4467888999999998887421 1233567888888888
Q ss_pred eecCCCcee---eeCCCCCccEEEEeec
Q 009416 194 RSCEGLESL---DLVNLSNLKEIILVNT 218 (535)
Q Consensus 194 ~~c~~l~~~---~~~~l~~L~~L~l~~c 218 (535)
++|... .+ .+..+++|+.|+++++
T Consensus 86 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 86 NDNQLK-SIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccC-EeCHHHhcCCCCCCEEEeCCC
Confidence 888542 22 2344556666655554
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.70 E-value=2.8e-05 Score=68.40 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=59.3
Q ss_pred eEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEe
Q 009416 117 KELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (535)
Q Consensus 117 ~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~ 194 (535)
+.+++... ....+|..+. ++|++|+|++|.+... ..+..+++|++|+|++|.++.- ....+..+++|++|+|+
T Consensus 15 ~~l~~~~n--~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNI--RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSS--CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred cEEEeCCC--CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECC
Confidence 34444433 2346776554 7888888888887433 4567888888888888877421 12234677888888888
Q ss_pred ecCCCcee---eeCCCCCccEEEEeec
Q 009416 195 SCEGLESL---DLVNLSNLKEIILVNT 218 (535)
Q Consensus 195 ~c~~l~~~---~~~~l~~L~~L~l~~c 218 (535)
+|... .+ .+..+++|+.|+++++
T Consensus 90 ~N~l~-~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 90 DNHLK-SIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SSCCC-CCCTTTTTTCTTCSEEECCSS
T ss_pred CCccc-eeCHHHhccccCCCEEEeCCC
Confidence 87532 22 1334555555555544
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.68 E-value=1.9e-05 Score=79.34 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=32.2
Q ss_pred ccCCCceeEEEEeCccccC-CCCcccCcccceeEeeeE--eeChhHHHHHHhCCCcccEEEEe
Q 009416 135 IFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREV--CADDQAIASLISGCPLIEYLEIR 194 (535)
Q Consensus 135 l~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~--~~~~~~l~~~~~~~p~Le~L~L~ 194 (535)
+..|.+|+.+.|...--.. ...+.+|++|+.+++..+ .++.. .+.+|++|+.+.+.
T Consensus 67 F~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 67 FQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDSVKMIGRC----TFSGCYALKSILLP 125 (394)
T ss_dssp TTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred hhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCCceEccch----hhcccccchhhccc
Confidence 3457888888886531111 145567788888887543 11221 25567777765543
No 150
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.55 E-value=2.1e-05 Score=80.50 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=37.4
Q ss_pred CCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhcc
Q 009416 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (535)
Q Consensus 8 ~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~ 48 (535)
..|.|+.||+|++.+||+||+.+|++++++|||+|+++...
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999986544
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.46 E-value=0.00012 Score=73.66 Aligned_cols=103 Identities=12% Similarity=0.009 Sum_probs=55.3
Q ss_pred CceeeEEEcCcch----hhcccCcccceeEEEEeccc-chhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccc
Q 009416 319 PNLSIFKYHGDLI----SFSSNALSLSETSLCFSSHL-MVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQ 393 (535)
Q Consensus 319 p~L~~L~~~g~~~----~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~ 393 (535)
.+|+.+.+..... ..+.++++|+.+.+..+... ......-...+. ++++|+ .+.+. +.++ .++..
T Consensus 248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---~c~~L~-~l~l~-~~i~--~I~~~--- 317 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---GCPKLA-RFEIP-ESIR--ILGQG--- 317 (401)
T ss_dssp CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---TCTTCC-EECCC-TTCC--EECTT---
T ss_pred CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---CCccCC-eEEeC-CceE--EEhhh---
Confidence 3555555533222 45677888888877533111 000001123345 677788 55554 2233 44442
Q ss_pred cCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeec
Q 009416 394 IQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHG 452 (535)
Q Consensus 394 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~ 452 (535)
.+..+++|+.+.|. .++..+....|..| +|+++.+...
T Consensus 318 -aF~~c~~L~~l~lp-------------------~~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 318 -LLGGNRKVTQLTIP-------------------ANVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp -TTTTCCSCCEEEEC-------------------TTCCEECTTSSSSS-CCCEEEECCS
T ss_pred -hhcCCCCccEEEEC-------------------ccccEEcHHhCCCC-CCCEEEEcCC
Confidence 34466788887773 12333445577888 8888888743
No 152
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.36 E-value=0.0001 Score=75.02 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=36.5
Q ss_pred CCCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416 7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (535)
Q Consensus 7 ~~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l 45 (535)
...|.++.||+|++.+||+||+.+|++++++|||+|+.+
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 456999999999999999999999999999999999974
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.30 E-value=3.9e-05 Score=68.17 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCceeEEEEeCc-cccCC------CCcccCcccceeEeeeEeeChhHH---HHHHhCCCcccEEEEeecC
Q 009416 137 YVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVCADDQAI---ASLISGCPLIEYLEIRSCE 197 (535)
Q Consensus 137 ~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l---~~~~~~~p~Le~L~L~~c~ 197 (535)
.+++|++|+|++| .+... ..+...++|++|+|++|.+++... ...+...++|++|+|++|.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3455666666665 44211 222345666677776666654432 2334445566666666654
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.29 E-value=0.00012 Score=64.16 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=63.6
Q ss_pred cCceEEEEeccCCCCccC-CccccCCCceeEEEEeCccccCC-C-CcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP-S-ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
.+++.|++..+... .+ |..+..+++|++|+|++|.+... + .+..+++|++|+|++|.+..- ....+..+++|++
T Consensus 33 ~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQIT--KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCcc--ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence 58899998876543 44 55677889999999999998544 3 357899999999999988421 1233678999999
Q ss_pred EEEeecCC
Q 009416 191 LEIRSCEG 198 (535)
Q Consensus 191 L~L~~c~~ 198 (535)
|+|++|+.
T Consensus 110 L~L~~N~~ 117 (174)
T 2r9u_A 110 IYLYNNPW 117 (174)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCc
Confidence 99999964
No 155
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.29 E-value=6e-05 Score=76.60 Aligned_cols=38 Identities=37% Similarity=0.582 Sum_probs=35.7
Q ss_pred CCCcCCCCCHH----HHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416 8 EVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQV 45 (535)
Q Consensus 8 ~~D~is~LPde----iL~~Ils~L~~~d~~r~s~vskrWr~l 45 (535)
..|.|+.||+| |+.+||+||+.++++++++|||+|+++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46899999999 999999999999999999999999964
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.22 E-value=0.00018 Score=62.88 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=63.1
Q ss_pred cCceEEEEeccCCCCccC-CccccCCCceeEEEEeCccccCC-C-CcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP-S-ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~ 190 (535)
.+++.|++..+... .+ |..+..+++|++|+|++|.+... + .+..+++|++|+|++|.+..- ....+..+++|++
T Consensus 30 ~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence 57888888876533 45 45577889999999999998543 3 357899999999999988431 1233678999999
Q ss_pred EEEeecCC
Q 009416 191 LEIRSCEG 198 (535)
Q Consensus 191 L~L~~c~~ 198 (535)
|+|++|+.
T Consensus 107 L~L~~N~~ 114 (170)
T 3g39_A 107 IWLLNNPW 114 (170)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCC
Confidence 99999864
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.04 E-value=0.00031 Score=68.99 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=52.7
Q ss_pred CccCCccccCCCceeEEEEeC-ccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCC
Q 009416 128 RRNLPEIIFYVESLHVLELSY-CKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG 198 (535)
Q Consensus 128 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~ 198 (535)
...+|. +..+++|++|+|++ |.+... ..+..+++|+.|+|++|.++.- .+..+..+++|++|+|++|..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc
Confidence 456888 88889999999996 877432 4577899999999999987432 223467889999999998864
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.85 E-value=0.00016 Score=64.13 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHHHh--cCceEEEEecc-CCCCc---cCCccccCCCceeEEEEeCccccCC------CCcccCcccceeE
Q 009416 100 NASLAGRCLGLAIE--SEVKELVLVHW-RSERR---NLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLA 167 (535)
Q Consensus 100 ~~~~~~~wl~~~~~--~~l~~L~L~~~-~~~~~---~lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~ 167 (535)
...++..++..+.. +.+++|+|..+ ..... .+...+...++|++|+|++|.+... ..+...++|++|+
T Consensus 20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence 34455666666554 46888888776 43221 2334455678999999999987432 2234557899999
Q ss_pred eeeEeeChhHHH---HHHhCCCcccEEEE--eecCC
Q 009416 168 LREVCADDQAIA---SLISGCPLIEYLEI--RSCEG 198 (535)
Q Consensus 168 L~~~~~~~~~l~---~~~~~~p~Le~L~L--~~c~~ 198 (535)
|++|.+++.... ..+..+++|++|+| ++|..
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 999998766543 34556788999999 65653
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.80 E-value=0.0011 Score=66.40 Aligned_cols=13 Identities=23% Similarity=0.140 Sum_probs=7.8
Q ss_pred hcccCcccceeEE
Q 009416 333 FSSNALSLSETSL 345 (535)
Q Consensus 333 ~~~~l~~L~~L~l 345 (535)
.+.++++|+.+.+
T Consensus 338 aF~~c~~L~~i~l 350 (394)
T 4fs7_A 338 SFRGCTSLSNINF 350 (394)
T ss_dssp TTTTCTTCCEECC
T ss_pred hccCCCCCCEEEE
Confidence 4556666666655
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.32 E-value=0.0016 Score=63.87 Aligned_cols=74 Identities=14% Similarity=0.011 Sum_probs=49.3
Q ss_pred EEEEeCc-cccCCCCcccCcccceeEeee-EeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEee
Q 009416 143 VLELSYC-KLQQPSENVKLFSLRKLALRE-VCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN 217 (535)
Q Consensus 143 ~L~L~~~-~~~~~~~~~~l~~L~~L~L~~-~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~ 217 (535)
.++.+++ .+...|.+..+++|++|+|++ |.+..- ....+.++++|++|+|++|. +..+ .+.++++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 3566776 664333388888999999986 776321 12336788999999999885 4333 345567777777666
Q ss_pred c
Q 009416 218 T 218 (535)
Q Consensus 218 c 218 (535)
+
T Consensus 90 N 90 (347)
T 2ifg_A 90 N 90 (347)
T ss_dssp S
T ss_pred C
Confidence 5
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.32 E-value=0.0013 Score=61.64 Aligned_cols=78 Identities=26% Similarity=0.235 Sum_probs=37.2
Q ss_pred cCceEEEEeccCCCCc-cCCccccCCCceeEEEEeCccccCCCCcccCc--ccceeEeeeEeeCh------hHHHHHHhC
Q 009416 114 SEVKELVLVHWRSERR-NLPEIIFYVESLHVLELSYCKLQQPSENVKLF--SLRKLALREVCADD------QAIASLISG 184 (535)
Q Consensus 114 ~~l~~L~L~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~--~L~~L~L~~~~~~~------~~l~~~~~~ 184 (535)
++|+.|+|+.+..... .+|..+..+++|+.|+|++|.+.....+..+. +|++|+|++|.+.. .....++..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 4566666655433221 23344445566666666666554332233333 56666666555522 112234455
Q ss_pred CCcccEE
Q 009416 185 CPLIEYL 191 (535)
Q Consensus 185 ~p~Le~L 191 (535)
+|+|+.|
T Consensus 250 ~P~L~~L 256 (267)
T 3rw6_A 250 FPKLLRL 256 (267)
T ss_dssp CTTCCEE
T ss_pred CcccCeE
Confidence 5555555
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.27 E-value=0.0038 Score=62.38 Aligned_cols=84 Identities=5% Similarity=0.029 Sum_probs=43.7
Q ss_pred hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416 332 SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT 411 (535)
Q Consensus 332 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~ 411 (535)
..+.++++|+.+.+... ... .-...+. ++++|+ .+.|. ..++ .+++. .+..+.+|+.+.|-
T Consensus 282 ~aF~~c~~L~~i~l~~~-i~~----I~~~aF~---~c~~L~-~i~lp-~~v~--~I~~~----aF~~C~~L~~i~ip--- 342 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSSR-ITE----LPESVFA---GCISLK-SIDIP-EGIT--QILDD----AFAGCEQLERIAIP--- 342 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCE----ECTTTTT---TCTTCC-EEECC-TTCC--EECTT----TTTTCTTCCEEEEC---
T ss_pred cccccccccccccCCCc-ccc----cCceeec---CCCCcC-EEEeC-Cccc--EehHh----HhhCCCCCCEEEEC---
Confidence 34556677777666211 000 0012234 567777 44442 1122 33332 34466778877762
Q ss_pred cCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416 412 DSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE 450 (535)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~ 450 (535)
.++..+-...|..|++|+++.+.
T Consensus 343 ----------------~sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 343 ----------------SSVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp ----------------TTCCBCCGGGGTTCTTCCEEEES
T ss_pred ----------------cccCEEhHhHhhCCCCCCEEEEC
Confidence 12333445577888888888776
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.12 E-value=0.0012 Score=61.77 Aligned_cols=62 Identities=23% Similarity=0.153 Sum_probs=40.4
Q ss_pred CCCceeEEEEeCccccCC----CCcccCcccceeEeeeEeeCh-hHHHHHHhCCCcccEEEEeecCCCc
Q 009416 137 YVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADD-QAIASLISGCPLIEYLEIRSCEGLE 200 (535)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~-~~l~~~~~~~p~Le~L~L~~c~~l~ 200 (535)
.+++|+.|+|++|.+... ..+..+++|+.|+|++|.+.+ ..+.. +..+ +|++|.|++|+..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCcc
Confidence 357888888888877543 223478888888888887743 23332 2333 78888888877543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.52 E-value=0.0067 Score=60.13 Aligned_cols=84 Identities=5% Similarity=-0.037 Sum_probs=42.9
Q ss_pred hhcccCcccceeEEEEe-cccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEe
Q 009416 332 SFSSNALSLSETSLCFS-SHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR 410 (535)
Q Consensus 332 ~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~ 410 (535)
..+.++.+|+.+.+... ...+ ...+. ++++|+ .+.+..+.++ .+++. .+..+.+|+.+.|-
T Consensus 257 ~aF~~~~~l~~i~l~~~i~~i~------~~aF~---~c~~L~-~i~l~~~~i~--~I~~~----aF~~c~~L~~i~lp-- 318 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAKVKTVP------YLLCS---GCSNLT-KVVMDNSAIE--TLEPR----VFMDCVKLSSVTLP-- 318 (379)
T ss_dssp TTTTTCTTCCEEEECCCCSEEC------TTTTT---TCTTCC-EEEECCTTCC--EECTT----TTTTCTTCCEEECC--
T ss_pred cccceeehhccccccccceecc------ccccc---cccccc-cccccccccc--eehhh----hhcCCCCCCEEEcC--
Confidence 34556667777666322 0000 11224 566777 4444322233 34432 34456677776662
Q ss_pred ecCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416 411 TDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE 450 (535)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~ 450 (535)
.++..+-...|..|++|+++.+.
T Consensus 319 -----------------~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 319 -----------------TALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp -----------------TTCCEECTTTTTTCTTCCCCCCC
T ss_pred -----------------ccccEEHHHHhhCCCCCCEEEEC
Confidence 12333444467777888877764
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.48 E-value=0.048 Score=54.26 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=63.5
Q ss_pred CcccCcccceeEeeeEee--ChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeecCCccEEe---e-
Q 009416 156 ENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE---I- 226 (535)
Q Consensus 156 ~~~~l~~L~~L~L~~~~~--~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~---~- 226 (535)
.+..+..|+.+.+..... +. ..+.+|+.|+.+.+.. .+..+ .+.++.+|+.+.+.. .+..+. +
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT
T ss_pred eeeecccccEEecccccceecC----cccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhh
Confidence 345567777777654322 22 1245677777777642 23333 455567777777653 233332 2
Q ss_pred cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeec
Q 009416 227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (535)
Q Consensus 227 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~ 286 (535)
+|.+|+++.+...-...-...|.+|.+|+.+.+.++.. .. ..+..+.+|+.+.+..
T Consensus 332 ~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~---~~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 332 GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRS---QW-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHH---HH-HTCBCCCCC-------
T ss_pred CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCcee---eh-hhhhccCCCCEEEeCC
Confidence 56777777775433111133578899999998876532 12 2356677888887653
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.58 E-value=0.4 Score=42.23 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=24.0
Q ss_pred cccccceeEeeccCCChHHHHHh---cCCCCCccEEEeecC
Q 009416 250 SCGNLKCLKFDFLPIEDEWLCNG---ISKLPLLEYLSMTKC 287 (535)
Q Consensus 250 ~l~~L~~L~L~~~~~~~~~l~~l---~~~~~~L~~L~L~~c 287 (535)
.-+.|++|+|+.|.+.+.....+ +..-+.|+.|+|+++
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34567778888888877654433 334456777777653
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.14 E-value=0.17 Score=44.63 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHh--cCceEEEEecc-CCCC---ccCCccccCCCceeEEEEeCccccCC------CCcccCcccceeE
Q 009416 100 NASLAGRCLGLAIE--SEVKELVLVHW-RSER---RNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLA 167 (535)
Q Consensus 100 ~~~~~~~wl~~~~~--~~l~~L~L~~~-~~~~---~~lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~ 167 (535)
...+++..+..... +.+++|+|... .... ..+-..+..-++|+.|+|++|.+... ..+..-+.|++|+
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 34566777766655 35788877643 2111 11222344457788888888876422 1122346788888
Q ss_pred eeeEeeChhHHHHH---HhCCCcccEEEEeec
Q 009416 168 LREVCADDQAIASL---ISGCPLIEYLEIRSC 196 (535)
Q Consensus 168 L~~~~~~~~~l~~~---~~~~p~Le~L~L~~c 196 (535)
|++|.+++.....+ +..-+.|++|+|+++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 88888866554443 333456777777654
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=83.46 E-value=0.88 Score=44.58 Aligned_cols=13 Identities=23% Similarity=0.074 Sum_probs=7.2
Q ss_pred cCCCCCccEEEee
Q 009416 273 ISKLPLLEYLSMT 285 (535)
Q Consensus 273 ~~~~~~L~~L~L~ 285 (535)
+.+|++|+.+.+.
T Consensus 282 F~~c~~L~~i~l~ 294 (379)
T 4h09_A 282 CSGCSNLTKVVMD 294 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred ccccccccccccc
Confidence 4455566665554
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.62 E-value=1.6 Score=35.47 Aligned_cols=42 Identities=21% Similarity=0.030 Sum_probs=29.9
Q ss_pred cCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEee
Q 009416 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA 173 (535)
Q Consensus 130 ~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~ 173 (535)
.+|..+ -++|++|+|++|.+... ..+..+++|++|+|.+|.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 566433 25688899999888433 4456788888888888876
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=58.49 E-value=3.8 Score=33.16 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=29.1
Q ss_pred cccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416 386 IVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH 453 (535)
Q Consensus 386 ~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~ 453 (535)
.+|. .+|. +|++|+|+. ..+..+....|...++|+.|.|..++
T Consensus 24 ~vP~-----~lp~--~l~~L~Ls~------------------N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPT-----AFPV--DTTELVLTG------------------NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCS-----CCCT--TCSEEECTT------------------SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCC-----CCCc--CCCEEECCC------------------CcCCccChhhhhhccccCEEEecCCC
Confidence 5665 5555 788888851 24455666677777888888887443
Done!