Query 009417
Match_columns 535
No_of_seqs 394 out of 1531
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 12:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 9.2E-41 2E-45 372.8 17.1 340 82-428 108-534 (640)
2 cd05496 Bromo_WDR9_II Bromodom 100.0 5.4E-28 1.2E-32 216.0 13.2 107 151-259 4-111 (119)
3 cd05495 Bromo_cbp_like Bromodo 100.0 6.6E-28 1.4E-32 212.3 12.5 105 151-255 2-107 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 2.3E-27 4.9E-32 208.5 12.0 101 153-253 6-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 3.6E-27 7.9E-32 203.6 11.1 95 154-250 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 1.1E-26 2.4E-31 201.2 11.0 99 153-251 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.6E-26 3.4E-31 199.8 11.0 96 154-251 2-97 (97)
8 cd05504 Bromo_Acf1_like Bromod 99.9 2.6E-26 5.7E-31 204.3 12.4 104 149-254 9-112 (115)
9 cd05498 Bromo_Brdt_II_like Bro 99.9 2.6E-26 5.7E-31 200.0 10.9 98 154-251 2-102 (102)
10 cd05501 Bromo_SP100C_like Brom 99.9 5.7E-26 1.2E-30 197.1 12.7 98 153-255 3-100 (102)
11 cd05507 Bromo_brd8_like Bromod 99.9 4.7E-26 1E-30 199.2 11.9 100 151-252 2-101 (104)
12 cd05499 Bromo_BDF1_2_II Bromod 99.9 7.1E-26 1.5E-30 197.4 11.2 98 154-251 2-102 (102)
13 cd05510 Bromo_SPT7_like Bromod 99.9 1.1E-25 2.3E-30 199.4 11.9 104 149-254 4-109 (112)
14 cd05500 Bromo_BDF1_2_I Bromodo 99.9 1.3E-25 2.8E-30 196.1 12.1 100 151-250 3-102 (103)
15 cd05502 Bromo_tif1_like Bromod 99.9 1.7E-25 3.7E-30 197.3 12.5 102 151-255 3-107 (109)
16 cd05508 Bromo_RACK7 Bromodomai 99.9 2.7E-25 5.9E-30 192.6 11.5 97 151-250 2-98 (99)
17 cd05509 Bromo_gcn5_like Bromod 99.9 2.7E-25 5.8E-30 193.3 11.4 99 153-253 2-100 (101)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 4.8E-25 1E-29 193.8 10.3 99 153-253 2-106 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 7.2E-25 1.6E-29 189.6 10.9 93 153-247 2-94 (98)
20 cd05511 Bromo_TFIID Bromodomai 99.9 2.3E-24 4.9E-29 191.0 12.4 104 155-260 3-106 (112)
21 cd05528 Bromo_AAA Bromodomain; 99.9 1.9E-24 4.1E-29 191.4 11.7 101 152-254 3-107 (112)
22 cd05512 Bromo_brd1_like Bromod 99.9 1.7E-24 3.7E-29 187.4 10.9 93 153-247 2-94 (98)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 6.6E-24 1.4E-28 185.4 10.3 97 153-251 1-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 7.5E-24 1.6E-28 185.7 10.2 97 154-252 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 1.4E-23 3E-28 186.3 10.8 101 153-255 3-109 (113)
26 cd05517 Bromo_polybromo_II Bro 99.9 2.9E-23 6.2E-28 181.3 9.6 94 154-249 2-101 (103)
27 cd05529 Bromo_WDR9_I_like Brom 99.9 7.7E-23 1.7E-27 185.3 12.7 103 149-252 21-126 (128)
28 cd05525 Bromo_ASH1 Bromodomain 99.9 5E-23 1.1E-27 180.6 10.7 96 153-250 3-104 (106)
29 cd05520 Bromo_polybromo_III Br 99.9 4.4E-23 9.6E-28 180.1 10.1 92 157-250 5-102 (103)
30 cd05518 Bromo_polybromo_IV Bro 99.9 6.3E-23 1.4E-27 179.1 9.9 94 155-250 3-102 (103)
31 smart00297 BROMO bromo domain. 99.9 1.3E-22 2.7E-27 177.2 11.6 101 151-253 6-106 (107)
32 PF00439 Bromodomain: Bromodom 99.9 1.4E-21 2.9E-26 163.4 9.6 84 157-242 1-84 (84)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.7E-21 3.7E-26 170.5 10.3 93 156-250 5-103 (104)
34 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.2E-21 4.8E-26 170.2 10.5 96 153-252 2-103 (106)
35 cd04369 Bromodomain Bromodomai 99.9 2.7E-21 5.8E-26 164.4 10.1 96 154-251 2-99 (99)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 3.1E-20 6.7E-25 163.4 12.0 96 159-254 7-106 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 6.6E-18 1.4E-22 148.4 11.0 99 152-254 3-107 (110)
38 KOG1245 Chromatin remodeling c 99.7 1.4E-17 3E-22 197.8 7.8 95 157-254 1306-1400(1404)
39 COG5076 Transcription factor i 99.7 4.7E-17 1E-21 172.4 9.5 104 152-257 142-251 (371)
40 KOG1472 Histone acetyltransfer 99.4 1.2E-13 2.6E-18 153.4 6.1 103 151-255 605-707 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 2.2E-13 4.8E-18 121.2 3.9 81 152-232 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.3 5.1E-12 1.1E-16 145.9 8.7 154 92-259 517-670 (1051)
43 cd05491 Bromo_TBP7_like Bromod 99.1 1.4E-10 3E-15 102.7 4.6 41 193-233 63-103 (119)
44 KOG0008 Transcription initiati 98.9 1.3E-09 2.8E-14 126.0 6.6 101 155-257 1385-1485(1563)
45 KOG0386 Chromatin remodeling c 98.9 2.1E-09 4.6E-14 121.9 7.0 100 155-256 1027-1132(1157)
46 KOG1827 Chromatin remodeling c 98.8 7.4E-09 1.6E-13 114.1 8.1 99 152-252 52-156 (629)
47 KOG1474 Transcription initiati 98.7 3.5E-09 7.6E-14 119.6 0.1 92 163-254 3-94 (640)
48 KOG0008 Transcription initiati 98.6 7.6E-08 1.7E-12 111.8 8.6 106 153-260 1262-1367(1563)
49 KOG1472 Histone acetyltransfer 98.6 4.2E-08 9.1E-13 109.8 5.6 76 151-235 292-367 (720)
50 KOG1828 IRF-2-binding protein 98.2 4.2E-07 9.1E-12 94.4 0.1 93 158-252 25-117 (418)
51 KOG1828 IRF-2-binding protein 98.0 5.3E-06 1.2E-10 86.4 4.3 82 161-245 217-298 (418)
52 COG5076 Transcription factor i 96.9 0.00023 5E-09 75.8 0.5 87 165-253 276-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.6 0.0028 6.1E-08 57.7 4.8 66 194-259 59-124 (131)
54 PF05110 AF-4: AF-4 proto-onco 91.8 0.17 3.7E-06 61.2 4.5 7 379-385 329-335 (1191)
55 KOG0644 Uncharacterized conser 91.6 0.15 3.3E-06 58.4 3.6 59 191-249 1050-1108(1113)
56 PHA03308 transcriptional regul 89.0 0.29 6.4E-06 55.2 2.9 6 170-175 590-595 (1463)
57 PHA03308 transcriptional regul 88.7 0.45 9.8E-06 53.8 4.1 12 404-415 1193-1204(1463)
58 KOG0732 AAA+-type ATPase conta 88.7 0.22 4.9E-06 59.1 1.9 64 170-233 533-601 (1080)
59 PF05110 AF-4: AF-4 proto-onco 87.0 0.67 1.5E-05 56.2 4.6 10 512-521 448-457 (1191)
60 KOG2130 Phosphatidylserine-spe 85.4 0.63 1.4E-05 48.3 2.8 13 464-476 325-337 (407)
61 KOG2140 Uncharacterized conser 83.1 0.75 1.6E-05 50.7 2.3 17 401-417 535-551 (739)
62 KOG3116 Predicted C3H1-type Zn 77.2 1.8 3.9E-05 40.2 2.4 10 357-366 56-65 (177)
63 KOG2130 Phosphatidylserine-spe 69.1 3.4 7.5E-05 43.0 2.4 7 379-385 262-268 (407)
64 KOG2140 Uncharacterized conser 65.7 4.7 0.0001 44.8 2.8 11 375-385 484-494 (739)
65 KOG0644 Uncharacterized conser 60.1 3.9 8.4E-05 47.6 0.9 74 175-250 88-193 (1113)
66 KOG1827 Chromatin remodeling c 57.3 1.5 3.2E-05 49.7 -2.9 76 170-247 213-288 (629)
67 PF14372 DUF4413: Domain of un 52.2 62 0.0013 28.0 7.0 52 207-258 4-55 (101)
68 PF11596 DUF3246: Protein of u 50.8 8.8 0.00019 38.1 1.6 6 464-469 172-177 (241)
69 PF07218 RAP1: Rhoptry-associa 49.7 20 0.00043 40.1 4.2 24 398-421 39-62 (782)
70 cd05494 Bromodomain_1 Bromodom 49.3 13 0.00028 33.1 2.3 71 348-422 38-108 (114)
71 PF07218 RAP1: Rhoptry-associa 47.5 33 0.00071 38.5 5.4 15 240-254 5-19 (782)
72 PF11116 DUF2624: Protein of u 46.3 19 0.00042 30.6 2.7 67 354-420 13-83 (85)
73 KOG4795 Protein associated wit 43.8 20 0.00043 36.0 2.8 10 520-529 254-263 (264)
74 TIGR02606 antidote_CC2985 puta 40.9 44 0.00095 27.1 4.0 27 198-224 12-38 (69)
75 PHA03309 transcriptional regul 40.1 27 0.00059 40.9 3.5 8 2-9 1276-1283(2033)
76 KOG2236 Uncharacterized conser 39.7 35 0.00077 37.4 4.2 8 466-473 88-95 (483)
77 KOG1869 Splicing coactivator S 39.5 37 0.00081 36.4 4.2 20 475-494 372-391 (425)
78 PF04360 Serglycin: Serglycin 26.5 43 0.00092 31.1 1.9 6 521-526 103-108 (150)
79 PRK08898 coproporphyrinogen II 24.8 1.3E+02 0.0028 32.5 5.5 45 371-415 87-131 (394)
80 PF03693 RHH_2: Uncharacterise 24.7 94 0.002 26.0 3.5 26 198-223 15-40 (80)
81 KOG2985 Uncharacterized conser 21.5 58 0.0013 33.1 1.9 15 353-367 90-104 (306)
82 PRK09057 coproporphyrinogen II 20.5 1.7E+02 0.0038 31.2 5.5 45 371-415 69-113 (380)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=9.2e-41 Score=372.82 Aligned_cols=340 Identities=35% Similarity=0.466 Sum_probs=220.8
Q ss_pred ceEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc-Cc----------c--ccC-----------CCCC--CCC-C---
Q 009417 82 YVSFNVASYSKKELFELKNRLISELEQIRQLKNRIE-SP----------Q--FRS-----------GSKK--SSI-S--- 131 (535)
Q Consensus 82 ~~~~~~~~~s~~e~~~l~~Rl~~eLeqvr~l~~ki~-~~----------~--~~~-----------~~k~--k~~-~--- 131 (535)
++.+.+..++..+++++..||..+|+++|.+++++. .. . ..+ +-+. .+. +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 187 (640)
T KOG1474|consen 108 ASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKSEREPS 187 (640)
T ss_pred cccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCcccccccccchhhhhccccccccccCcCCCC
Confidence 345788889999999999999999999999999996 11 1 000 0000 000 0
Q ss_pred -CCCCCCCch-------------hhhhhcccCcHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCH
Q 009417 132 -GNKRPFVSN-------------ELKKLNQQDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDL 197 (535)
Q Consensus 132 -~~kr~~~~~-------------~~~~~~r~~~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL 197 (535)
+.++..... .....+-.....++++|..||..||.|+++|+|+.|||++.||+||||+||++||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDL 267 (640)
T KOG1474|consen 188 PGQKREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDL 267 (640)
T ss_pred ccccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccH
Confidence 000000000 011111223478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCC----CCC
Q 009417 198 GTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDD----EFP 273 (535)
Q Consensus 198 ~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~~~~~~~~~~----e~~ 273 (535)
+|||+||+++.|.++.+|+.||||||.|||+||++|++||.||..|+.+|+.+|+.+...+............ +..
T Consensus 268 gTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (640)
T KOG1474|consen 268 GTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQI 347 (640)
T ss_pred HHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999987666532220000000 000
Q ss_pred c------------------CCcCcchhhHHH-hhhcCCC--CCCCchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009417 274 A------------------HSWNFHEVKEKE-VVKQQPL--PKPEPMQRVLATGSNHNPKPNPPPAAAAPQMPVRTPSPV 332 (535)
Q Consensus 274 ~------------------~~~~~~~~~~r~-~kk~~~~--~~~~~q~~~~~~~~~s~~~~~~~~~~~~~q~~~~t~s~~ 332 (535)
. ..+.....+... ......+ .....+..+.. ....+... ++. +.........
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~--~~~~~~~~--~~~---~~e~~~~~~~ 420 (640)
T KOG1474|consen 348 PSNSVEGPRSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIA--LLQRPVSK--PPR---KIEEELESDK 420 (640)
T ss_pred ccccccCcccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHh--hhhccccC--ccc---cccccccccc
Confidence 0 000000000000 0000000 00000000000 00000000 000 0000000000
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC-CChhhHHHHHHHH--HhhcCCCCCCCCeEEEeCCCCC--
Q 009417 333 RVTPA--VKPLKQPKPKAKDPNKREMSMEEKHKLGIGLQS-LPQEKMEQVIHIL--KKRNGNLRQDEDEIELDIEALD-- 405 (535)
Q Consensus 333 ~~~~~--~k~~k~~k~k~~~~~~r~MT~eEK~~Ls~~I~~-Lp~ekl~~VIqII--kk~~p~l~~~~DEIELDID~Ld-- 405 (535)
..... ....+.....+...+++.||..|+..|...++. +++..+..+++|+ ..+.+.+.+++++|++|++.++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~ 500 (640)
T KOG1474|consen 421 RPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKLKELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGS 500 (640)
T ss_pred cccchhhhhhhhhccccccccccccccccccccchhhccCCCCCccccCcccccchhhhcccccccccchhhcccccccc
Confidence 00000 000122223344567899999999999999999 5999999999999 5577888889999999999999
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHH
Q 009417 406 -----------TETLWELDRFVTNYKKMVSKIKR 428 (535)
Q Consensus 406 -----------~eTL~eL~~~V~~~~k~~~k~kr 428 (535)
.+|+|++.+|+..+.....+...
T Consensus 501 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~ 534 (640)
T KOG1474|consen 501 QSREPSSNPLEIETIRETLKLSTERELELSKASS 534 (640)
T ss_pred cccCCCcccchhhhhhccccchhhHHHHHHHHhh
Confidence 99999999999999887766655
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5.4e-28 Score=215.99 Aligned_cols=107 Identities=36% Similarity=0.577 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..|.+.|..||..|++++.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5799999999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009417 231 PK-DHEVHIIAEQFLARFEELFRPINEKLM 259 (535)
Q Consensus 231 ~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (535)
++ ++.||.+|..|+..|+++|+.+...+.
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 999999999999999999999988774
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=6.6e-28 Score=212.30 Aligned_cols=105 Identities=35% Similarity=0.551 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 009417 151 GKLMKNCGQILTKLMKH-KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~-k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (535)
+++++.|..||..|+++ +.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 99999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009417 230 NPKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
|++++.||.+|.+|++.|++.++.++
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987664
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.3e-27 Score=208.50 Aligned_cols=101 Identities=36% Similarity=0.549 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 009417 153 LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 232 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~ 232 (535)
+.-.+..||..|++++.+|+|..|||+..+++||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||++
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKP 85 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34445788999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 009417 233 DHEVHIIAEQFLARFEELFRP 253 (535)
Q Consensus 233 ~s~v~~~A~~L~~~Fe~~~~~ 253 (535)
++.|+.+|..|++.|++.++.
T Consensus 86 ~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 86 GDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998765
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.6e-27 Score=203.64 Aligned_cols=95 Identities=32% Similarity=0.504 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 009417 154 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 233 (535)
Q Consensus 154 ~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~ 233 (535)
+++|..||..|++++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999876 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 009417 234 HEVHIIAEQFLARFEEL 250 (535)
Q Consensus 234 s~v~~~A~~L~~~Fe~~ 250 (535)
+.|+.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.1e-26 Score=201.21 Aligned_cols=99 Identities=62% Similarity=1.051 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 009417 153 LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 232 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~ 232 (535)
+++.|..||+.|++++.+++|..||++...++|+||++|++||||+||++||+++.|.++.+|..||+|||.||++||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999987779999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 009417 233 DHEVHIIAEQFLARFEELF 251 (535)
Q Consensus 233 ~s~v~~~A~~L~~~Fe~~~ 251 (535)
++.++.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.6e-26 Score=199.77 Aligned_cols=96 Identities=34% Similarity=0.569 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 009417 154 MKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 233 (535)
Q Consensus 154 ~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~ 233 (535)
+.+|..||..|++++.+++|..||++.. +|+||++|++||||+||++||++|.|.++.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 009417 234 HEVHIIAEQFLARFEELF 251 (535)
Q Consensus 234 s~v~~~A~~L~~~Fe~~~ 251 (535)
+.++.+|..|++.|+..|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.6e-26 Score=204.26 Aligned_cols=104 Identities=35% Similarity=0.578 Sum_probs=99.4
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 009417 149 DNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 228 (535)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~ 228 (535)
.....+..|..||..|+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~ 86 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFL 86 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999865 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009417 229 YNPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 229 YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
||++++.+|.+|..|++.|++.++.+
T Consensus 87 yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 87 YNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998865
No 9
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.6e-26 Score=199.98 Aligned_cols=98 Identities=46% Similarity=0.786 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHcC---CCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 154 MKNCGQILTKLMKH---KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 154 ~k~c~~iL~~L~~~---k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
+++|.+||..|+++ +.+++|..||++...++||||++|++||||+||++||++|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999 779999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 009417 231 PKDHEVHIIAEQFLARFEELF 251 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~ 251 (535)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 10
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.7e-26 Score=197.06 Aligned_cols=98 Identities=27% Similarity=0.422 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 009417 153 LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 232 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~ 232 (535)
.++.|+.||..|++++.+++|..++ . ++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~p--~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISKP--Y--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCCC--C--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4667999999999999999997632 2 49999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 009417 233 DHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 233 ~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
+ .++.+|..|++.|+++|+.++
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999998775
No 11
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.7e-26 Score=199.25 Aligned_cols=100 Identities=28% Similarity=0.418 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..|++.|..||..|+.|+.+++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999999865 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 009417 231 PKDHEVHIIAEQFLARFEELFR 252 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~ 252 (535)
++++.|+.+|..|++.|...+.
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~ 101 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQ 101 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998887754
No 12
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.1e-26 Score=197.37 Aligned_cols=98 Identities=39% Similarity=0.738 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcC---CCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 154 MKNCGQILTKLMKH---KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 154 ~k~c~~iL~~L~~~---k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
++.|..||..|+++ ..+++|..||++...++||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57999999999995 459999999999966799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 009417 231 PKDHEVHIIAEQFLARFEELF 251 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~ 251 (535)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 13
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.1e-25 Score=199.36 Aligned_cols=104 Identities=31% Similarity=0.465 Sum_probs=97.7
Q ss_pred CcHHHHHHHHHHHHHHHcC-CCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHh
Q 009417 149 DNGKLMKNCGQILTKLMKH-KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAM 227 (535)
Q Consensus 149 ~~~~~~k~c~~iL~~L~~~-k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~ 227 (535)
+..++.+.|..||..|+++ +.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 4 ~~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~ 81 (112)
T cd05510 4 GQEEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCL 81 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 4478999999999999999 89999999999986 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCC-HHHHHHHHHHHHHHHHHHHH
Q 009417 228 TYNPKDH-EVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 228 ~YN~~~s-~v~~~A~~L~~~Fe~~~~~i 254 (535)
.||++++ .++.+|..|++.|+.++..|
T Consensus 82 ~yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 82 LYNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999865 67899999999999988765
No 14
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=196.15 Aligned_cols=100 Identities=35% Similarity=0.503 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+.++|..||..|++++.+++|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46789999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 009417 231 PKDHEVHIIAEQFLARFEEL 250 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~ 250 (535)
+++|.++.+|..|++.|++.
T Consensus 83 ~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 83 GPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 15
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.7e-25 Score=197.30 Aligned_cols=102 Identities=37% Similarity=0.633 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHhHh
Q 009417 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSK---NLYDSPASFAADVRLTFNNAM 227 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~---~~Y~s~~eF~~DvrLif~Na~ 227 (535)
...+++|..||..|++|+.+++|..||++ . +|+||++|++||||+||++||+. |.|.++.+|.+||+|||+||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998 3 99999999999999999999999 699999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009417 228 TYNPKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
.||++++.++.+|..|++.|+++|+.++
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999998764
No 16
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.7e-25 Score=192.58 Aligned_cols=97 Identities=29% Similarity=0.419 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
.++...++.++..|. |+.+|+|..||++.. +||||++|++||||+||++||++|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356778888999999 999999999999976 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 009417 231 PKDHEVHIIAEQFLARFEEL 250 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~ 250 (535)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 17
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.7e-25 Score=193.31 Aligned_cols=99 Identities=35% Similarity=0.545 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 009417 153 LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 232 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~ 232 (535)
+..+|..||..|++|+.+++|..||++.. +|+||++|++||||+||++||.++.|.++.+|..||+|||.||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56899999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 009417 233 DHEVHIIAEQFLARFEELFRP 253 (535)
Q Consensus 233 ~s~v~~~A~~L~~~Fe~~~~~ 253 (535)
++.++.+|..|++.|++++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998765
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.8e-25 Score=193.82 Aligned_cols=99 Identities=23% Similarity=0.344 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhH
Q 009417 153 LMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNA 226 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na 226 (535)
+.+.|..||..|+++++ +++|.+||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999887 899999999876 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 009417 227 MTYNPKDHEVHIIAEQFLARFEELFRP 253 (535)
Q Consensus 227 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~ 253 (535)
++||++|+.||.+|..|++.|++.+..
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.2e-25 Score=189.61 Aligned_cols=93 Identities=33% Similarity=0.424 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 009417 153 LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 232 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~ 232 (535)
+.+.|..||+.|++++.+++|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56889999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 009417 233 DHEVHIIAEQFLARF 247 (535)
Q Consensus 233 ~s~v~~~A~~L~~~F 247 (535)
++.+|.+|.+|...-
T Consensus 80 ~s~~~~~A~~L~~~~ 94 (98)
T cd05513 80 DTIYYKAAKKLLHSG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999997653
No 20
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.3e-24 Score=191.02 Aligned_cols=104 Identities=36% Similarity=0.519 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 009417 155 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 234 (535)
Q Consensus 155 k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s 234 (535)
..++.|+..|++++.+++|..||++.. +|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||++++
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 356889999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009417 235 EVHIIAEQFLARFEELFRPINEKLMQ 260 (535)
Q Consensus 235 ~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (535)
.++.+|..|.+.|+.++..+..++..
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~~~ 106 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKLTQ 106 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999887753
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=1.9e-24 Score=191.44 Aligned_cols=101 Identities=31% Similarity=0.465 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCC
Q 009417 152 KLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP 231 (535)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~ 231 (535)
++...|..|+..|+.++.+++|..||+... +||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 577889999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CC----CHHHHHHHHHHHHHHHHHHHH
Q 009417 232 KD----HEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 232 ~~----s~v~~~A~~L~~~Fe~~~~~i 254 (535)
++ +.|+.+|..|++.|..++..+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 94 699999999999999987654
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.7e-24 Score=187.38 Aligned_cols=93 Identities=33% Similarity=0.478 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 009417 153 LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 232 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~ 232 (535)
+...|+.+|..|+.++.+++|..||+... +||||++|++||||+||++||.++.|.++++|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 009417 233 DHEVHIIAEQFLARF 247 (535)
Q Consensus 233 ~s~v~~~A~~L~~~F 247 (535)
++.+|++|.+|++.-
T Consensus 80 ~s~~~~~A~~l~~~~ 94 (98)
T cd05512 80 DTIFYRAAVRLRDQG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998753
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=6.6e-24 Score=185.36 Aligned_cols=97 Identities=28% Similarity=0.384 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCC------CCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhH
Q 009417 153 LMKNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNA 226 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k------~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na 226 (535)
+++.|..|++.|+.++ .+++|..||+... +||||++|++||||+||++||+.|.|.++.+|..||+|||.||
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na 78 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANA 78 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 3678999999999655 3899999999887 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHH
Q 009417 227 MTYNPKDHEVHIIAEQFLARFEELF 251 (535)
Q Consensus 227 ~~YN~~~s~v~~~A~~L~~~Fe~~~ 251 (535)
++||++++.+|.+|..|++.|+.+|
T Consensus 79 ~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 79 RTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999875
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=7.5e-24 Score=185.68 Aligned_cols=97 Identities=27% Similarity=0.376 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHh
Q 009417 154 MKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAM 227 (535)
Q Consensus 154 ~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~ 227 (535)
+++|..|+..|+.+++ +++|..||+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999988654 799999998887 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 009417 228 TYNPKDHEVHIIAEQFLARFEELFR 252 (535)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~~~~ 252 (535)
+||+++|.+|.+|..|++.|.+.++
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=1.4e-23 Score=186.30 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhH
Q 009417 153 LMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNA 226 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na 226 (535)
..++|..|+..|++++. +.+|..+++... +||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999998655 578999888766 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009417 227 MTYNPKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 227 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
++||++++.+|.+|..|++.|++.++++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987664
No 26
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.9e-23 Score=181.33 Aligned_cols=94 Identities=27% Similarity=0.374 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHh
Q 009417 154 MKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAM 227 (535)
Q Consensus 154 ~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~ 227 (535)
++.|..|+..|+.+.. +++|..+++... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999998765 699999999887 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 009417 228 TYNPKDHEVHIIAEQFLARFEE 249 (535)
Q Consensus 228 ~YN~~~s~v~~~A~~L~~~Fe~ 249 (535)
.||++++.||.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 27
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=7.7e-23 Score=185.35 Aligned_cols=103 Identities=27% Similarity=0.406 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHHHHHHH---cCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009417 149 DNGKLMKNCGQILTKLM---KHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (535)
Q Consensus 149 ~~~~~~k~c~~iL~~L~---~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (535)
....+...|..+|.+|+ .++.+++|..||+... .+|+||++|++||||+||++||+++.|.++.+|..||+|||.|
T Consensus 21 ~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~N 99 (128)
T cd05529 21 IRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSN 99 (128)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 44788899999999999 8999999999999983 3999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 009417 226 AMTYNPKDHEVHIIAEQFLARFEELFR 252 (535)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~ 252 (535)
|++||++++.++.+|..|++.|..++.
T Consensus 100 a~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 100 AETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998864
No 28
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=5e-23 Score=180.61 Aligned_cols=96 Identities=21% Similarity=0.328 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhH
Q 009417 153 LMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNA 226 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na 226 (535)
+.+.|..|+..|..++. +++|..+++... +||||++|++||||+||++||++|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 55678888888887665 699999999877 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 009417 227 MTYNPKDHEVHIIAEQFLARFEEL 250 (535)
Q Consensus 227 ~~YN~~~s~v~~~A~~L~~~Fe~~ 250 (535)
++||++++.+|.+|..|++.|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999863
No 29
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=4.4e-23 Score=180.13 Aligned_cols=92 Identities=26% Similarity=0.378 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCC------CCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 157 CGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 157 c~~iL~~L~~~k------~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
+..|++.|+.++ .+++|.+||+... +||||++|++||||+||++||+++.|.++.+|+.||+|||.||++||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344555555544 4899999999877 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 009417 231 PKDHEVHIIAEQFLARFEEL 250 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~ 250 (535)
++++.+|.+|..|++.|++.
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=6.3e-23 Score=179.14 Aligned_cols=94 Identities=24% Similarity=0.378 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCC------CCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 009417 155 KNCGQILTKLMKHK------LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 228 (535)
Q Consensus 155 k~c~~iL~~L~~~k------~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~ 228 (535)
++|..|+..|.+.+ .+.+|..+|+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45666777666653 4889999999887 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 009417 229 YNPKDHEVHIIAEQFLARFEEL 250 (535)
Q Consensus 229 YN~~~s~v~~~A~~L~~~Fe~~ 250 (535)
||++++.||.+|..|++.|++.
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998763
No 31
>smart00297 BROMO bromo domain.
Probab=99.88 E-value=1.3e-22 Score=177.24 Aligned_cols=101 Identities=46% Similarity=0.620 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+...|..|+..+.+++.+++|..||+... +|+||++|++||||+||++||++|.|.++.+|..||+|||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5678899999999999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 009417 231 PKDHEVHIIAEQFLARFEELFRP 253 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~ 253 (535)
++++.++.+|..|...|+..|++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.86 E-value=1.4e-21 Score=163.42 Aligned_cols=84 Identities=50% Similarity=0.805 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHH
Q 009417 157 CGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEV 236 (535)
Q Consensus 157 c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v 236 (535)
|..||..|++++.+++|..||+... +|+|+++|++||||++|++||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8999999999999999999997776 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 009417 237 HIIAEQ 242 (535)
Q Consensus 237 ~~~A~~ 242 (535)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.7e-21 Score=170.47 Aligned_cols=93 Identities=30% Similarity=0.372 Sum_probs=83.7
Q ss_pred HHHHHHHHHHc------CCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhh
Q 009417 156 NCGQILTKLMK------HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY 229 (535)
Q Consensus 156 ~c~~iL~~L~~------~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y 229 (535)
++..|+..|++ ++.+++|..+|+... +||||++|++||||+||++||..+.|.++.+|..||+|||.||+.|
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44555555555 345899999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 009417 230 NPKDHEVHIIAEQFLARFEEL 250 (535)
Q Consensus 230 N~~~s~v~~~A~~L~~~Fe~~ 250 (535)
|++++.+|.+|..|++.|+.+
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 34
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.2e-21 Score=170.19 Aligned_cols=96 Identities=29% Similarity=0.339 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhH
Q 009417 153 LMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNA 226 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na 226 (535)
+.++|..|+..|+..+. +.+|..+++... +||||++|++||||+||++||.. |.++.+|..||+|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 46789999999998765 568998888766 99999999999999999999998 999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHH
Q 009417 227 MTYNPKDHEVHIIAEQFLARFEELFR 252 (535)
Q Consensus 227 ~~YN~~~s~v~~~A~~L~~~Fe~~~~ 252 (535)
+.||++++.+|.+|..|++.|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988753
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.85 E-value=2.7e-21 Score=164.38 Aligned_cols=96 Identities=43% Similarity=0.586 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcC--CCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCC
Q 009417 154 MKNCGQILTKLMKH--KLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP 231 (535)
Q Consensus 154 ~k~c~~iL~~L~~~--k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~ 231 (535)
...|..|+..|..+ +.+++|..||+... +|+||++|++||||++|++||.+|.|.++.+|..||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46799999999999 99999999999966 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 009417 232 KDHEVHIIAEQFLARFEELF 251 (535)
Q Consensus 232 ~~s~v~~~A~~L~~~Fe~~~ 251 (535)
.++.++.+|..|+..|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=3.1e-20 Score=163.35 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=83.5
Q ss_pred HHHHHHHc-CCCCCcCcCCCCccc---cCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 009417 159 QILTKLMK-HKLGYIFNSPVDVVG---MALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 234 (535)
Q Consensus 159 ~iL~~L~~-~k~s~~F~~PVd~~~---l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s 234 (535)
.++..+.. -+..++|..||.... .++|+||++|++||||+||++||++|.|+++++|..||+|||+||+.||++++
T Consensus 7 f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s 86 (109)
T cd05492 7 FIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADS 86 (109)
T ss_pred HHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34445554 455799999997433 35999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009417 235 EVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 235 ~v~~~A~~L~~~Fe~~~~~i 254 (535)
.++.+|..|.+....-+.+|
T Consensus 87 ~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 87 EQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877776665
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.75 E-value=6.6e-18 Score=148.39 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009417 152 KLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (535)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (535)
.+++.+..|+..+++|.+ +.+|.+.+.. .++||.+|+.||||.+|++||.+|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~----~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPEL----AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCCc----ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 467788899999999885 7888888772 578899999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 009417 226 AMTYNPKDHEVHIIAEQFLARFEELFRPI 254 (535)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i 254 (535)
|++||.+||.||.+|..|+++|......+
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887655
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.4e-17 Score=197.83 Aligned_cols=95 Identities=42% Similarity=0.713 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHH
Q 009417 157 CGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEV 236 (535)
Q Consensus 157 c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v 236 (535)
|..||..|+.|+.+|||++||+... +||||+||++||||.||+.||..|.|.++++|..||+|||.||.+||.. +.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999999 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009417 237 HIIAEQFLARFEELFRPI 254 (535)
Q Consensus 237 ~~~A~~L~~~Fe~~~~~i 254 (535)
++.+..|.++|+..|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999987654
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.69 E-value=4.7e-17 Score=172.37 Aligned_cols=104 Identities=33% Similarity=0.427 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHc------CCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009417 152 KLMKNCGQILTKLMK------HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (535)
Q Consensus 152 ~~~k~c~~iL~~L~~------~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (535)
.+.+.|..++..+.. ...+++|..+|+... +|+||.||+.||||+||++||..+.|.++++|..||.|||.|
T Consensus 142 ~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N 219 (371)
T COG5076 142 LLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDN 219 (371)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 344444444443333 234899999999888 999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009417 226 AMTYNPKDHEVHIIAEQFLARFEELFRPINEK 257 (535)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 257 (535)
|.+||.+++.||.+|..|++.|..++..+...
T Consensus 220 ~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 220 CKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999998876543
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.42 E-value=1.2e-13 Score=153.43 Aligned_cols=103 Identities=34% Similarity=0.488 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
..+......||..|..|..+|||.+||+... +||||++|++||||.||+.+|..++|..+.+|+.|+..||.||+.||
T Consensus 605 ~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn 682 (720)
T KOG1472|consen 605 GKLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYN 682 (720)
T ss_pred chhhHHHHhHHhhhhcCCccCCccCcccccc--CCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccC
Confidence 3566778899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 009417 231 PKDHEVHIIAEQFLARFEELFRPIN 255 (535)
Q Consensus 231 ~~~s~v~~~A~~L~~~Fe~~~~~i~ 255 (535)
+.++..|+.|..|...|....+...
T Consensus 683 ~~~~~y~k~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 683 GSDTQYYKCAQALEKFFLFKLNELI 707 (720)
T ss_pred Cccchheecccchhhhhcchhhhhh
Confidence 9999999999999999988776553
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.38 E-value=2.2e-13 Score=121.18 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcC-------CCCCHHHHHHHHHHHHH
Q 009417 152 KLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKN-------LYDSPASFAADVRLTFN 224 (535)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~-------~Y~s~~eF~~DvrLif~ 224 (535)
+.+..|..+|..++.++.+|+|..||++...++||||++||+||||+||+++|..+ .|..-..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45678888888888888999999999997778999999999999999999999997 45555566677777777
Q ss_pred hHhhhCCC
Q 009417 225 NAMTYNPK 232 (535)
Q Consensus 225 Na~~YN~~ 232 (535)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 77777663
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.29 E-value=5.1e-12 Score=145.91 Aligned_cols=154 Identities=27% Similarity=0.287 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCCCCCCCCCCCchhhhhhcccCcHHHHHHHHHHHHHHHcCCCCC
Q 009417 92 KKELFELKNRLISELEQIRQLKNRIESPQFRSGSKKSSISGNKRPFVSNELKKLNQQDNGKLMKNCGQILTKLMKHKLGY 171 (535)
Q Consensus 92 ~~e~~~l~~Rl~~eLeqvr~l~~ki~~~~~~~~~k~k~~~~~kr~~~~~~~~~~~r~~~~~~~k~c~~iL~~L~~~k~s~ 171 (535)
..|.++.+++|+..|+..+.+.+.+...... +.... ...........-...+.++.+|..|.+.+-..
T Consensus 517 ~~d~~k~~~~L~~~~~s~~~l~e~~r~r~~l-----k~~~~-------~~~~~~~~~~l~p~~kLl~~~l~~lq~kD~~g 584 (1051)
T KOG0955|consen 517 RVDSLKYWQALRLDLESAQLLVELTRKREKL-----KRILV-------KSQKEALELGLNPFKKLLQKSLDKLQKKDSYG 584 (1051)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHh-------chhhhhhcccCchHHHHHHHHHHHhhcccccC
Confidence 4566778889999999999988887333211 00000 00000000123467788999999999999999
Q ss_pred cCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 009417 172 IFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELF 251 (535)
Q Consensus 172 ~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~Fe~~~ 251 (535)
+|..|||... +|||+++|++||||.|++.+++++.|.++++|..|+.||..||+.||..++.+|..|..+++.....+
T Consensus 585 if~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~ 662 (1051)
T KOG0955|consen 585 IFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDF 662 (1051)
T ss_pred ceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHH
Confidence 9999999998 99999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHhh
Q 009417 252 RPINEKLM 259 (535)
Q Consensus 252 ~~i~~~~~ 259 (535)
.......+
T Consensus 663 ~~arke~e 670 (1051)
T KOG0955|consen 663 RNARKEPE 670 (1051)
T ss_pred Hhcccchh
Confidence 77665544
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.06 E-value=1.4e-10 Score=102.73 Aligned_cols=41 Identities=27% Similarity=0.510 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCC
Q 009417 193 NPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKD 233 (535)
Q Consensus 193 ~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~ 233 (535)
.||||+||++||.+|+|.++++|++||+|||.||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999863
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.91 E-value=1.3e-09 Score=125.98 Aligned_cols=101 Identities=27% Similarity=0.366 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCC
Q 009417 155 KNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDH 234 (535)
Q Consensus 155 k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s 234 (535)
-....|+.+++.-+.+|+|.+||+.+. +|+||.+|++||||.||.+++..+.|.+..+|.+||++|+.||..||+..+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~ 1462 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAES 1462 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccc
Confidence 455677778778888999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009417 235 EVHIIAEQFLARFEELFRPINEK 257 (535)
Q Consensus 235 ~v~~~A~~L~~~Fe~~~~~i~~~ 257 (535)
.....|+++-.+....+.+....
T Consensus 1463 ~y~~k~~k~~ev~~~~~~e~~~~ 1485 (1563)
T KOG0008|consen 1463 AYTKKARKIGEVGLANLLEYIEH 1485 (1563)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 88888877766665555444333
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.89 E-value=2.1e-09 Score=121.86 Aligned_cols=100 Identities=28% Similarity=0.375 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhh
Q 009417 155 KNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMT 228 (535)
Q Consensus 155 k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~ 228 (535)
+.|..|+....++.. +..|...+.... +||||++|+.||++..|+++|.++.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 678899988886654 789999888888 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009417 229 YNPKDHEVHIIAEQFLARFEELFRPINE 256 (535)
Q Consensus 229 YN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 256 (535)
||..||.||..|..|+.+|...+..+..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999988776654
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.82 E-value=7.4e-09 Score=114.14 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHcCCC------CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 009417 152 KLMKNCGQILTKLMKHKL------GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNN 225 (535)
Q Consensus 152 ~~~k~c~~iL~~L~~~k~------s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~N 225 (535)
.++.++..||..+..+.. ...|.+..+... .|+||.+|..||.|..|++|+..+.|.+.+.|..||.|||.|
T Consensus 52 ~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~en 129 (629)
T KOG1827|consen 52 PLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTEN 129 (629)
T ss_pred HHHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 456667777777776654 678888888888 999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 009417 226 AMTYNPKDHEVHIIAEQFLARFEELFR 252 (535)
Q Consensus 226 a~~YN~~~s~v~~~A~~L~~~Fe~~~~ 252 (535)
|..||..++.+|+++..|+..|..+-.
T Consensus 130 a~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 130 ARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 999999999999999999999988653
No 47
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.68 E-value=3.5e-09 Score=119.59 Aligned_cols=92 Identities=34% Similarity=0.612 Sum_probs=86.1
Q ss_pred HHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHH
Q 009417 163 KLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQ 242 (535)
Q Consensus 163 ~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~ 242 (535)
.+.+|.++|+|..||+.+.+++|+||.+|++|||++||+++++++.|.+..+..+|+.-+|.||+.||..+..|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 009417 243 FLARFEELFRPI 254 (535)
Q Consensus 243 L~~~Fe~~~~~i 254 (535)
++..|......+
T Consensus 83 ~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 83 LEKLFPKKLRSM 94 (640)
T ss_pred chhhcccccccc
Confidence 999887655544
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.62 E-value=7.6e-08 Score=111.76 Aligned_cols=106 Identities=27% Similarity=0.410 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCC
Q 009417 153 LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPK 232 (535)
Q Consensus 153 ~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~ 232 (535)
+.-.+..|+.++...++..+|..||+... ++|||.||+.||||.|+|+.+....|.+-++|..|+.||+.|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 45567788999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009417 233 DHEVHIIAEQFLARFEELFRPINEKLMQ 260 (535)
Q Consensus 233 ~s~v~~~A~~L~~~Fe~~~~~i~~~~~~ 260 (535)
.+.+...+..+...+-..|.+-..++-.
T Consensus 1340 ~~~~t~~~q~mls~~~~~~~ekedk~~~ 1367 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKLKEKEDKLWR 1367 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhhchhHHHHHH
Confidence 9999999999988888888766655543
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.60 E-value=4.2e-08 Score=109.83 Aligned_cols=76 Identities=30% Similarity=0.451 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhC
Q 009417 151 GKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYN 230 (535)
Q Consensus 151 ~~~~k~c~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN 230 (535)
.++...|. .++++|+|.++|+... .|+||.||+.||||+|+.+|+..+.|.+.++|+.|+.+||.||.+||
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n 362 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYN 362 (720)
T ss_pred HHHHHHhc-------ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhc
Confidence 55555665 4889999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCH
Q 009417 231 PKDHE 235 (535)
Q Consensus 231 ~~~s~ 235 (535)
..-+.
T Consensus 363 ~ee~~ 367 (720)
T KOG1472|consen 363 SEESH 367 (720)
T ss_pred cccch
Confidence 96443
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.16 E-value=4.2e-07 Score=94.41 Aligned_cols=93 Identities=24% Similarity=0.223 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHH
Q 009417 158 GQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVH 237 (535)
Q Consensus 158 ~~iL~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~ 237 (535)
+.++.+|.....-..|.-||.... .|+|.++|+.|||+.|++.|++.++|.+..+|..|.+|+..||..||...+.++
T Consensus 25 ehhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~ 102 (418)
T KOG1828|consen 25 EHHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPI 102 (418)
T ss_pred HHHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcccc
Confidence 455556666666677778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009417 238 IIAEQFLARFEELFR 252 (535)
Q Consensus 238 ~~A~~L~~~Fe~~~~ 252 (535)
..|.+|..+-...+.
T Consensus 103 ~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 103 VAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccchhhcchhh
Confidence 999999776555544
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.98 E-value=5.3e-06 Score=86.36 Aligned_cols=82 Identities=24% Similarity=0.133 Sum_probs=73.8
Q ss_pred HHHHHcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHH
Q 009417 161 LTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIA 240 (535)
Q Consensus 161 L~~L~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A 240 (535)
..+|........|..++-... .|.|.-+|++|+|++|++.|..++.|.| -+|..|+.||+.||++||.+...+|.+|
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyela 293 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELA 293 (418)
T ss_pred HHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHH
Confidence 344555555788888888877 9999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHH
Q 009417 241 EQFLA 245 (535)
Q Consensus 241 ~~L~~ 245 (535)
..+..
T Consensus 294 nk~lh 298 (418)
T KOG1828|consen 294 NKQLH 298 (418)
T ss_pred Hhhhh
Confidence 98876
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.94 E-value=0.00023 Score=75.83 Aligned_cols=87 Identities=30% Similarity=0.404 Sum_probs=79.6
Q ss_pred HcCCCCCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHH
Q 009417 165 MKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFL 244 (535)
Q Consensus 165 ~~~k~s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~ 244 (535)
..+-.+|+|..++.... .|+|+++|..+|++.|.+.+|..+.|....+|..|..++|.||..||+.....+..+..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
T COG5076 276 QAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE 353 (371)
T ss_pred ccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence 44556899999999988 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 009417 245 ARFEELFRP 253 (535)
Q Consensus 245 ~~Fe~~~~~ 253 (535)
..|......
T Consensus 354 ~~~~~~~~~ 362 (371)
T COG5076 354 DFVIKKTRL 362 (371)
T ss_pred hhHhhhhhh
Confidence 887776543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.61 E-value=0.0028 Score=57.72 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009417 194 PMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLM 259 (535)
Q Consensus 194 PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~ 259 (535)
|.||.-|++||+.|.|+++.+|.+||-.|++-++.=.+..-.+-+.-..+..+|-+++..++.++.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999876654444555555666777788777777775
No 54
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=91.83 E-value=0.17 Score=61.16 Aligned_cols=7 Identities=43% Similarity=0.619 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 009417 379 VIHILKK 385 (535)
Q Consensus 379 VIqIIkk 385 (535)
|=+||++
T Consensus 329 veeIlrE 335 (1191)
T PF05110_consen 329 VEEILRE 335 (1191)
T ss_pred HHHHHHH
Confidence 4444444
No 55
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=91.59 E-value=0.15 Score=58.38 Aligned_cols=59 Identities=25% Similarity=0.445 Sum_probs=51.2
Q ss_pred cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHH
Q 009417 191 IKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEE 249 (535)
Q Consensus 191 Ik~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~Fe~ 249 (535)
-.-|..|..|+.+|++++|++.+.|..||-.|..||.+|.+.+.-+-..+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 45688999999999999999999999999999999999999888776666666666554
No 56
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=88.99 E-value=0.29 Score=55.20 Aligned_cols=6 Identities=0% Similarity=-0.313 Sum_probs=3.0
Q ss_pred CCcCcC
Q 009417 170 GYIFNS 175 (535)
Q Consensus 170 s~~F~~ 175 (535)
-.+|++
T Consensus 590 p~~~i~ 595 (1463)
T PHA03308 590 PPVTIN 595 (1463)
T ss_pred Cceeec
Confidence 445555
No 57
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=88.68 E-value=0.45 Score=53.77 Aligned_cols=12 Identities=33% Similarity=0.296 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHH
Q 009417 404 LDTETLWELDRF 415 (535)
Q Consensus 404 Ld~eTL~eL~~~ 415 (535)
|..-||+.|++.
T Consensus 1193 lthvtlrrlrdv 1204 (1463)
T PHA03308 1193 LTHVTLRRLRDV 1204 (1463)
T ss_pred hhhhhHHHHHHH
Confidence 334455555443
No 58
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.22 Score=59.11 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=56.9
Q ss_pred CCcCcCCCCccc---cCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHhHhhhCCCC
Q 009417 170 GYIFNSPVDVVG---MALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAA--DVRLTFNNAMTYNPKD 233 (535)
Q Consensus 170 s~~F~~PVd~~~---l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~--DvrLif~Na~~YN~~~ 233 (535)
...|..|++... +++++|.++|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 677888887533 235699999999999999999999999999999999 9999999999999965
No 59
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=87.05 E-value=0.67 Score=56.24 Aligned_cols=10 Identities=80% Similarity=0.733 Sum_probs=3.8
Q ss_pred CCCCCCCCCC
Q 009417 512 SSSSSDSDSG 521 (535)
Q Consensus 512 sssss~s~s~ 521 (535)
|||+|||+|.
T Consensus 448 SsS~SDSESE 457 (1191)
T PF05110_consen 448 SSSSSDSESE 457 (1191)
T ss_pred ccCccccccc
Confidence 3333333333
No 60
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=85.44 E-value=0.63 Score=48.28 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=7.0
Q ss_pred CCCCcccccccCC
Q 009417 464 GEAGDEDVDIGDE 476 (535)
Q Consensus 464 ~e~~dEdvDI~~~ 476 (535)
.++..|..||.+.
T Consensus 325 ~~~~pel~~l~~s 337 (407)
T KOG2130|consen 325 ALQRPELADLADS 337 (407)
T ss_pred hhcChhHHHHhhh
Confidence 4455555666543
No 61
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=83.07 E-value=0.75 Score=50.72 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=8.1
Q ss_pred CCCCCHHHHHHHHHHHH
Q 009417 401 IEALDTETLWELDRFVT 417 (535)
Q Consensus 401 ID~Ld~eTL~eL~~~V~ 417 (535)
|..+....|+.|-+|..
T Consensus 535 Ihr~EtnkLRnlakffa 551 (739)
T KOG2140|consen 535 IHRYETNKLRNLAKFFA 551 (739)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 34444445555555544
No 62
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=77.16 E-value=1.8 Score=40.25 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=4.0
Q ss_pred CHHHHHHHHH
Q 009417 357 SMEEKHKLGI 366 (535)
Q Consensus 357 T~eEK~~Ls~ 366 (535)
|.+-|.+|..
T Consensus 56 T~qLkk~l~~ 65 (177)
T KOG3116|consen 56 TQQLKKKLRT 65 (177)
T ss_pred HHHHHHHHhh
Confidence 3333444443
No 63
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=69.09 E-value=3.4 Score=43.02 Aligned_cols=7 Identities=43% Similarity=0.487 Sum_probs=3.3
Q ss_pred HHHHHHh
Q 009417 379 VIHILKK 385 (535)
Q Consensus 379 VIqIIkk 385 (535)
-|++|+.
T Consensus 262 PIEc~q~ 268 (407)
T KOG2130|consen 262 PIECLQK 268 (407)
T ss_pred Cceeeec
Confidence 3445544
No 64
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=65.74 E-value=4.7 Score=44.80 Aligned_cols=11 Identities=0% Similarity=0.244 Sum_probs=4.6
Q ss_pred hHHHHHHHHHh
Q 009417 375 KMEQVIHILKK 385 (535)
Q Consensus 375 kl~~VIqIIkk 385 (535)
+-..++.||-+
T Consensus 484 q~~elc~mii~ 494 (739)
T KOG2140|consen 484 QEKELCNMIID 494 (739)
T ss_pred hhHHHHHHHHH
Confidence 33334444443
No 65
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=60.14 E-value=3.9 Score=47.55 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=55.4
Q ss_pred CCCCccccCCCchhcccCCCCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHHH
Q 009417 175 SPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLY--------------D----------SPAS------FAADVRLTFN 224 (535)
Q Consensus 175 ~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y--------------~----------s~~e------F~~DvrLif~ 224 (535)
-++|... .|-|..+..-|.+|+|++..|.+..| . ++.+ ..+-+++|-.
T Consensus 88 ~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 88 PMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred cCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 3566665 78899999999999999999999887 2 3334 6778889999
Q ss_pred hHhhhCCCCCHHH--HHHHHHHHHHHHH
Q 009417 225 NAMTYNPKDHEVH--IIAEQFLARFEEL 250 (535)
Q Consensus 225 Na~~YN~~~s~v~--~~A~~L~~~Fe~~ 250 (535)
||+.++.|++.|- ++..+|.-.|...
T Consensus 166 at~~~akPgtmvqkmk~ikrLlgH~naV 193 (1113)
T KOG0644|consen 166 ATFSIAKPGTMVQKMKNIKRLLGHRNAV 193 (1113)
T ss_pred ceeeecCcHHHHHHHHHHHHHHhhhhhe
Confidence 9999999999443 2334444444444
No 66
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=57.27 E-value=1.5 Score=49.72 Aligned_cols=76 Identities=8% Similarity=-0.150 Sum_probs=67.1
Q ss_pred CCcCcCCCCccccCCCchhcccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHH
Q 009417 170 GYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARF 247 (535)
Q Consensus 170 s~~F~~PVd~~~l~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~F 247 (535)
...|..-++.+. +|+||.+++-+|-+..+.+++..++|.....|..|.-+.|.|+..|+....-++..+..|.+.+
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 344555556665 8999999999999999999999999999999999999999999999999999999998886644
No 67
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=52.19 E-value=62 Score=27.99 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009417 207 NLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKL 258 (535)
Q Consensus 207 ~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 258 (535)
..|.|..-|...|..|-.....++..+..+..+|..+...|++.|+.+..-+
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~~l 55 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNLLL 55 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4688889999888888888888887789999999999999999998665443
No 68
>PF11596 DUF3246: Protein of unknown function (DUF3246); InterPro: IPR021642 This is a small family of fungal proteins one of whose members, A3LUS4 from SWISSPROT from Pichia stipitis is described as being an extremely serine rich protein-mucin-like protein.
Probab=50.81 E-value=8.8 Score=38.13 Aligned_cols=6 Identities=67% Similarity=0.900 Sum_probs=3.3
Q ss_pred CCCCcc
Q 009417 464 GEAGDE 469 (535)
Q Consensus 464 ~e~~dE 469 (535)
.|..||
T Consensus 172 ~e~CdE 177 (241)
T PF11596_consen 172 GEDCDE 177 (241)
T ss_pred ccccce
Confidence 455555
No 69
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=49.72 E-value=20 Score=40.14 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=10.9
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHH
Q 009417 398 ELDIEALDTETLWELDRFVTNYKK 421 (535)
Q Consensus 398 ELDID~Ld~eTL~eL~~~V~~~~k 421 (535)
|+++|++.-=+-..=..|+..|-+
T Consensus 39 efn~dd~n~wm~ldd~nflntwtk 62 (782)
T PF07218_consen 39 EFNVDDINSWMKLDDANFLNTWTK 62 (782)
T ss_pred ccCcccchhcccccHHHHHHHHhh
Confidence 444444433333333455655543
No 70
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=49.26 E-value=13 Score=33.14 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhcCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 009417 348 AKDPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVTNYKKM 422 (535)
Q Consensus 348 ~~~~~~r~MT~eEK~~Ls~~I~~Lp~ekl~~VIqIIkk~~p~l~~~~DEIELDID~Ld~eTL~eL~~~V~~~~k~ 422 (535)
-.+..+++|.+....+.-..... +...+.++.++...+-....++++++.+.+...|+|.+-.|++.+.+.
T Consensus 38 Y~~iIK~PMDL~ti~~kl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd05494 38 YRDVIKRPMSFGTKVNNIVETGA----RDLEDLQIVQEDPADKQIDDEGRRSPSNIYAVEALEQLIVFQCKQVKG 108 (114)
T ss_pred hhhhcCCCCChHHHHHHHHcccc----ccccccccccccccccccccccccCcccccchhhcccchHHHHhhhhh
Confidence 34566899999977766655433 444566677666555555678899999999999999999999988653
No 71
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=47.47 E-value=33 Score=38.52 Aligned_cols=15 Identities=27% Similarity=0.529 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 009417 240 AEQFLARFEELFRPI 254 (535)
Q Consensus 240 A~~L~~~Fe~~~~~i 254 (535)
+.-|.-+|-.+|+.+
T Consensus 5 ~~sllvlf~alyqnv 19 (782)
T PF07218_consen 5 ASSLLVLFYALYQNV 19 (782)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344555555555443
No 72
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=46.34 E-value=19 Score=30.59 Aligned_cols=67 Identities=16% Similarity=0.350 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHhc-CCChhhHHHHHHHHHhhcCCCCCCCC--eEEEeCCCC-CHHHHHHHHHHHHHHH
Q 009417 354 REMSMEEKHKLGIGLQ-SLPQEKMEQVIHILKKRNGNLRQDED--EIELDIEAL-DTETLWELDRFVTNYK 420 (535)
Q Consensus 354 r~MT~eEK~~Ls~~I~-~Lp~ekl~~VIqIIkk~~p~l~~~~D--EIELDID~L-d~eTL~eL~~~V~~~~ 420 (535)
.-||.+|-.+++..-+ .|+.++.+.|++||+....+..++++ .+=..|..+ +++|..+...++..|.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf~ 83 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQFT 83 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4589999999999986 48999999999999998777665432 333344444 7777777777776653
No 73
>KOG4795 consensus Protein associated with transcriptional elongation factor ELL [Transcription]
Probab=43.79 E-value=20 Score=36.04 Aligned_cols=10 Identities=80% Similarity=0.760 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q 009417 520 SGSSSGSDSD 529 (535)
Q Consensus 520 s~sss~s~s~ 529 (535)
+.|.+|||+|
T Consensus 254 slSEsGSDsd 263 (264)
T KOG4795|consen 254 SLSESGSDSD 263 (264)
T ss_pred ccccCCCcCC
Confidence 4455666665
No 74
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=40.94 E-value=44 Score=27.07 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009417 198 GTVKSKLSKNLYDSPASFAADVRLTFN 224 (535)
Q Consensus 198 ~tIk~KL~~~~Y~s~~eF~~DvrLif~ 224 (535)
..|+.++.+|.|.|..++++|...++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998777654
No 75
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=40.14 E-value=27 Score=40.95 Aligned_cols=8 Identities=63% Similarity=0.729 Sum_probs=3.8
Q ss_pred hhhhhccc
Q 009417 2 ASAVLANR 9 (535)
Q Consensus 2 ~~~~~~~~ 9 (535)
|-|.||||
T Consensus 1276 A~AAL~GR 1283 (2033)
T PHA03309 1276 AAAALAGR 1283 (2033)
T ss_pred HHHHHhcc
Confidence 33445554
No 76
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.66 E-value=35 Score=37.41 Aligned_cols=8 Identities=38% Similarity=0.298 Sum_probs=3.5
Q ss_pred CCcccccc
Q 009417 466 AGDEDVDI 473 (535)
Q Consensus 466 ~~dEdvDI 473 (535)
+.+++||.
T Consensus 88 ~~~d~vd~ 95 (483)
T KOG2236|consen 88 QPDDLVDP 95 (483)
T ss_pred ccccccch
Confidence 33444444
No 77
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=39.46 E-value=37 Score=36.43 Aligned_cols=20 Identities=25% Similarity=0.487 Sum_probs=11.3
Q ss_pred CCCCCCCCCCcccccccccc
Q 009417 475 DEIPMSSFPPVEIEKDNAHN 494 (535)
Q Consensus 475 ~~~p~~~~ppv~iek~~~~~ 494 (535)
|.+-.++.-|+-++++..-+
T Consensus 372 d~~~~~~~~p~r~e~~~~k~ 391 (425)
T KOG1869|consen 372 DYIAKTNLAPIRVEKSAEKV 391 (425)
T ss_pred Cccccccccccccccccchh
Confidence 33333445677777766544
No 78
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=26.54 E-value=43 Score=31.12 Aligned_cols=6 Identities=83% Similarity=1.121 Sum_probs=2.2
Q ss_pred CCCCCC
Q 009417 521 GSSSGS 526 (535)
Q Consensus 521 ~sss~s 526 (535)
||.|+|
T Consensus 103 gsgsGS 108 (150)
T PF04360_consen 103 GSGSGS 108 (150)
T ss_pred CCcCCC
Confidence 333333
No 79
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.81 E-value=1.3e+02 Score=32.47 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=28.4
Q ss_pred CChhhHHHHHHHHHhhcCCCCCCCCeEEEeCCCCCHHHHHHHHHH
Q 009417 371 LPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRF 415 (535)
Q Consensus 371 Lp~ekl~~VIqIIkk~~p~l~~~~DEIELDID~Ld~eTL~eL~~~ 415 (535)
|++++|.+|++.|+++-+......=.+|.+.+.++.+-|..|++.
T Consensus 87 L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~ 131 (394)
T PRK08898 87 LSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRAS 131 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHc
Confidence 567888888888888765432222345555566666666666553
No 80
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=24.69 E-value=94 Score=25.95 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009417 198 GTVKSKLSKNLYDSPASFAADVRLTF 223 (535)
Q Consensus 198 ~tIk~KL~~~~Y~s~~eF~~DvrLif 223 (535)
.-|+.++.+|.|.|..++++|--.++
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRll 40 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLL 40 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45999999999999999998854444
No 81
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=58 Score=33.12 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=10.2
Q ss_pred CCCCCHHHHHHHHHH
Q 009417 353 KREMSMEEKHKLGIG 367 (535)
Q Consensus 353 ~r~MT~eEK~~Ls~~ 367 (535)
.-.+++.++..|...
T Consensus 90 ~ghl~fqcRn~~~vk 104 (306)
T KOG2985|consen 90 VGHLTFQCRNFLSVK 104 (306)
T ss_pred cchhhHHHhhhhhcc
Confidence 346788887777654
No 82
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.47 E-value=1.7e+02 Score=31.22 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=28.6
Q ss_pred CChhhHHHHHHHHHhhcCCCCCCCCeEEEeCCCCCHHHHHHHHHH
Q 009417 371 LPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRF 415 (535)
Q Consensus 371 Lp~ekl~~VIqIIkk~~p~l~~~~DEIELDID~Ld~eTL~eL~~~ 415 (535)
|++++|.++++.|++.-+.....+=.||.+.+.++.+.|..|+++
T Consensus 69 l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~ 113 (380)
T PRK09057 69 MQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAA 113 (380)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHc
Confidence 567788888888877544322112246777777777777766654
Done!