BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009420
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 177/450 (39%), Gaps = 58/450 (12%)
Query: 95 VQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCD-WKEIDGLGARRWYATD 153
+ +++C ++ +G ++ TGG ND +K D S D W + R Y +
Sbjct: 244 TKHDMFCPGISMDGNGQIVVTGG-NDAKK-----TSLYDSSSDSWIPGPDMQVARGYQSS 297
Query: 154 HILPDXXXXXXXXXXQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFL 213
+ D F+ + KNG VYS T+ P + N L D
Sbjct: 298 ATMSDGRVFTIGG--SFSGGVFEKNG--EVYSPSSKTWTSLPNAKVN----PMLTADKQG 349
Query: 214 FIFANNRAILFDYVNNKVVKQYPAIP--------GGDPRS----YPSSGSAVLLPLKN-L 260
++N A LF + V + P+ GD +S + G A N +
Sbjct: 350 LYKSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 409
Query: 261 LAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMGD 320
+ +V ++L GG+P A + L T P + + R
Sbjct: 410 MYDAVKGKILTFGGSPDYTDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFHT 465
Query: 321 MTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHST 380
+LP+G+ + G +G + PV P +Y P+ F QNP++I R YHS
Sbjct: 466 SVVLPDGSTFITGGQRRGIIFED--STPVFTPEIYVPEQ---DTFYKQNPNSIVRAYHSI 520
Query: 381 AVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDAPFANL--RPTIVLPESQ 438
++LL DGRV GG G + F+P YL NL RP I +Q
Sbjct: 521 SLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYDSNGNLATRPKITRTSTQ 574
Query: 439 FTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSGY 498
K R + S +++K ++ + TH+ + +QR + L T+T G + Y
Sbjct: 575 -----SVKVGGRITISTDSSISKASLIRYGTA--THTVNTDQRRIPL---TLTNNGGNSY 624
Query: 499 EIVVNSPGSGNLAPSGYYLLFVVHQ-DVPS 527
V P +A GY++LFV++ VPS
Sbjct: 625 SFQV--PSDSGVALPGYWMLFVMNSAGVPS 652
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 178/450 (39%), Gaps = 58/450 (12%)
Query: 95 VQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCD-WKEIDGLGARRWYATD 153
+ +++C ++ +G ++ TGG ND +K D S D W + R Y +
Sbjct: 222 TKHDMFCPGISMDGNGQIVVTGG-NDAKK-----TSLYDSSSDSWIPGPDMQVARGYQSS 275
Query: 154 HILPDXXXXXXXXXXQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFL 213
+ D F+ + KNG VYS T+ P + N L D
Sbjct: 276 ATMSDGRVFTIGG--SFSGGVFEKNG--EVYSPSSKTWTSLPNAKVN----PMLTADKQG 327
Query: 214 FIFANNRAILFDYVNNKVVKQYPAIP--------GGDPRS----YPSSGSAVLLPLKN-L 260
++N A LF + V + P+ GD +S + G A N +
Sbjct: 328 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 387
Query: 261 LAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMGD 320
+ +V ++L GG+P A + L T P + + R
Sbjct: 388 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFHT 443
Query: 321 MTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHST 380
+LP+G+ + G +G + PV P +Y P+ F QNP++I R+YHS
Sbjct: 444 SVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSI 498
Query: 381 AVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDAPFANL--RPTIVLPESQ 438
++LL DGRV GG G + F+P YL NL RP I +Q
Sbjct: 499 SLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQ 552
Query: 439 FTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSGY 498
K R + S +++K ++ + TH+ + +QR + L T+T G + Y
Sbjct: 553 -----SVKVGGRITISTDSSISKASLIRYGTA--THTVNTDQRRIPL---TLTNNGGNSY 602
Query: 499 EIVVNSPGSGNLAPSGYYLLFVVHQ-DVPS 527
V P +A GY++LFV++ VPS
Sbjct: 603 SFQV--PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 108/450 (24%), Positives = 176/450 (39%), Gaps = 58/450 (12%)
Query: 95 VQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCD-WKEIDGLGARRWYATD 153
+ +++C ++ +G ++ TGG ND +K D S D W + R Y +
Sbjct: 222 TKHDMFCPGISMDGNGQIVVTGG-NDAKK-----TSLYDSSSDSWIPGPDMQVARGYQSS 275
Query: 154 HILPDXXXXXXXXXXQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFL 213
+ D ++ + KNG VYS T+ P + N L D
Sbjct: 276 ATMSDGRVFTIGG--SWSGGVFEKNG--EVYSPSSKTWTSLPNAKVN----PMLTADKQG 327
Query: 214 FIFANNRAILFDYVNNKVVKQYPAIP--------GGDPRSYPSSGSAV-----LLPLKNL 260
++N A LF + V + P+ GD +S S + +
Sbjct: 328 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMSGNAV 387
Query: 261 LAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMGD 320
+ +V ++L GG+P A + L T P + + R
Sbjct: 388 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFHT 443
Query: 321 MTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHST 380
+LP+G+ + G +G + PV P +Y P+ F QNP++I R+YHS
Sbjct: 444 SVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSI 498
Query: 381 AVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDAPFANL--RPTIVLPESQ 438
++LL DGRV GG G + F+P YL NL RP I +Q
Sbjct: 499 SLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQ 552
Query: 439 FTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSGY 498
K R + S +++K ++ + TH+ + +QR + L T+T G + Y
Sbjct: 553 -----SVKVGGRITISTDSSISKASLIRYGTA--THTVNTDQRRIPL---TLTNNGGNSY 602
Query: 499 EIVVNSPGSGNLAPSGYYLLFVVHQ-DVPS 527
V P +A GY++LFV++ VPS
Sbjct: 603 SFQV--PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 178/450 (39%), Gaps = 58/450 (12%)
Query: 95 VQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCD-WKEIDGLGARRWYATD 153
+ +++C ++ +G ++ TGG ND +K D S D W + R Y +
Sbjct: 222 TKHDMFCPGISMDGNGQIVVTGG-NDAKK-----TSLYDSSSDSWIPGPDMQVARGYQSS 275
Query: 154 HILPDXXXXXXXXXXQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFL 213
+ D ++ + KNG VYS T+ P + N L D
Sbjct: 276 ATMSDGRVFTIGG--SWSGGVFEKNG--EVYSPSSKTWTSLPNAKVN----PMLTADKQG 327
Query: 214 FIFANNRAILFDYVNNKVVKQYPAIP--------GGDPRS----YPSSGSAVLLPLKN-L 260
++N A LF + V + P+ GD +S + G A N +
Sbjct: 328 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 387
Query: 261 LAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMGD 320
+ +V ++L GG+P A + L T P + + R
Sbjct: 388 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFHT 443
Query: 321 MTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHST 380
+LP+G+ + G +G + PV P +Y P+ F QNP++I R+YHS
Sbjct: 444 SVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSI 498
Query: 381 AVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDAPFANL--RPTIVLPESQ 438
++LL DGRV GG G + F+P YL NL RP I +Q
Sbjct: 499 SLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQ 552
Query: 439 FTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSGY 498
K R + S +++K ++ + TH+ + +QR + L T+T G + Y
Sbjct: 553 -----SVKVGGRITISTDSSISKASLIRYGTA--THTVNTDQRRIPL---TLTNNGGNSY 602
Query: 499 EIVVNSPGSGNLAPSGYYLLFVVHQ-DVPS 527
V P +A GY++LFV++ VPS
Sbjct: 603 SFQV--PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 115/271 (42%), Gaps = 30/271 (11%)
Query: 260 LLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMG 319
++ +V ++L GG+P A + L T P + + R
Sbjct: 387 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFH 442
Query: 320 DMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHS 379
+LP+G+ + G +G + PV P +Y P+ F QNP++I R+YHS
Sbjct: 443 TSVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHS 497
Query: 380 TAVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDAPFANL--RPTIVLPES 437
++LL DGRV GG G + F+P YL NL RP I +
Sbjct: 498 ISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTST 551
Query: 438 QFTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSG 497
Q K R + S +++K ++ + TH+ + +QR + L T+T G +
Sbjct: 552 Q-----SVKVGGRITISTDSSISKASLIRYGTA--THTVNTDQRRIPL---TLTNNGGNS 601
Query: 498 YEIVVNSPGSGNLAPSGYYLLFVVHQ-DVPS 527
Y V P +A GY++LFV++ VPS
Sbjct: 602 YSFQV--PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 115/271 (42%), Gaps = 30/271 (11%)
Query: 260 LLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMG 319
++ +V ++L GG+P A + L T P + + R
Sbjct: 387 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFH 442
Query: 320 DMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHS 379
+LP+G+ + G +G + PV P +Y P+ F QNP++I R+YHS
Sbjct: 443 TSVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHS 497
Query: 380 TAVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDAPFANL--RPTIVLPES 437
++LL DGRV GG G + F+P YL NL RP I +
Sbjct: 498 ISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTST 551
Query: 438 QFTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSG 497
Q K R + S +++K ++ + TH+ + +QR + L T+T G +
Sbjct: 552 Q-----SVKVGGRITISTDSSISKASLIRYGTA--THTVNTDQRRIPL---TLTNNGGNS 601
Query: 498 YEIVVNSPGSGNLAPSGYYLLFVVHQ-DVPS 527
Y V P +A GY++LFV++ VPS
Sbjct: 602 YSFQV--PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 115/271 (42%), Gaps = 30/271 (11%)
Query: 260 LLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMG 319
++ +V ++L GG+P A + L T P + + R
Sbjct: 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFH 459
Query: 320 DMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHS 379
+LP+G+ + G +G + PV P +Y P+ F QNP++I R+YHS
Sbjct: 460 TSVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHS 514
Query: 380 TAVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDAPFANL--RPTIVLPES 437
++LL DGRV GG G + F+P YL NL RP I +
Sbjct: 515 ISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTST 568
Query: 438 QFTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSG 497
Q K R + S +++K ++ + TH+ + +QR + L T+T G +
Sbjct: 569 Q-----SVKVGGRITISTDSSISKASLIRYGTA--THTVNTDQRRIPL---TLTNNGGNS 618
Query: 498 YEIVVNSPGSGNLAPSGYYLLFVVHQ-DVPS 527
Y V P +A GY++LFV++ VPS
Sbjct: 619 YSFQV--PSDSGVALPGYWMLFVMNSAGVPS 647
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 354 VYRPDNIPGSRFDLQNP-STIPRMYHSTAVLLRDGRVLVGGSNPHAYYNFTGV 405
+Y +I G R ++++ STIPR ++ L DGRV G NPH +F GV
Sbjct: 13 LYGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRV-TNGFNPHLSAHFFGV 64
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 22/168 (13%)
Query: 321 MTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRP---------DNIPGSRFDLQNPS 371
M L PNG + I G + P L P +P D + F + P
Sbjct: 94 MWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPG 153
Query: 372 TIPRMY----------HSTAVLLRDGRVLVGGSN-PHAYYNFTGVLFPTELSLEAFSPYY 420
T+ + H + DG V++G N + +F F L A P Y
Sbjct: 154 TVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFS--YGLNAKWPVY 211
Query: 421 LDAPFANLRPTIVLPESQFTLKYKQKFRVRFSASGPVALNKVTVTMVA 468
L L+ + + +F Y+++F+ +F A+G +++ MVA
Sbjct: 212 LSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVA 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,338,748
Number of Sequences: 62578
Number of extensions: 770450
Number of successful extensions: 1463
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 11
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)