Query 009420
Match_columns 535
No_of_seqs 399 out of 2110
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 6.5E-44 1.4E-48 345.0 24.1 232 41-274 1-243 (243)
2 KOG4441 Proteins containing BT 100.0 3.2E-38 7E-43 344.3 27.8 268 47-383 283-568 (571)
3 KOG4441 Proteins containing BT 100.0 7.6E-35 1.6E-39 317.9 25.3 250 109-423 284-550 (571)
4 PHA02713 hypothetical protein; 100.0 1.2E-34 2.6E-39 317.2 25.3 263 23-371 278-543 (557)
5 PHA02713 hypothetical protein; 100.0 2E-34 4.3E-39 315.4 24.0 252 79-422 273-536 (557)
6 cd02851 Galactose_oxidase_C_te 100.0 7.2E-34 1.6E-38 237.3 12.2 98 425-535 2-101 (101)
7 TIGR03547 muta_rot_YjhT mutatr 100.0 6E-32 1.3E-36 280.5 28.6 295 33-398 2-333 (346)
8 PRK14131 N-acetylneuraminic ac 100.0 3.4E-31 7.4E-36 277.7 28.6 319 27-419 17-368 (376)
9 PF09118 DUF1929: Domain of un 100.0 3.2E-33 6.9E-38 233.9 9.2 97 429-534 1-98 (98)
10 PLN02153 epithiospecifier prot 100.0 2.1E-30 4.6E-35 268.4 31.4 297 24-398 4-326 (341)
11 PHA02790 Kelch-like protein; P 100.0 4.9E-30 1.1E-34 276.8 24.3 218 83-420 251-471 (480)
12 PHA02790 Kelch-like protein; P 100.0 1.6E-29 3.5E-34 272.8 24.9 210 45-369 268-478 (480)
13 TIGR03548 mutarot_permut cycli 100.0 1.2E-28 2.7E-33 253.3 26.9 271 40-398 5-315 (323)
14 PLN02193 nitrile-specifier pro 100.0 1.1E-27 2.3E-32 258.0 31.2 280 26-398 150-455 (470)
15 PHA03098 kelch-like protein; P 100.0 7.2E-28 1.6E-32 264.2 24.8 245 79-421 265-513 (534)
16 PHA03098 kelch-like protein; P 100.0 1.9E-27 4.2E-32 260.7 26.6 251 25-375 272-525 (534)
17 TIGR03547 muta_rot_YjhT mutatr 99.9 2.8E-26 6E-31 238.1 24.3 241 24-336 38-331 (346)
18 TIGR03548 mutarot_permut cycli 99.9 1.5E-25 3.2E-30 230.5 24.1 230 28-336 52-313 (323)
19 PRK14131 N-acetylneuraminic ac 99.9 1.9E-25 4.1E-30 234.3 24.1 262 26-367 61-374 (376)
20 PLN02193 nitrile-specifier pro 99.9 1.3E-24 2.8E-29 234.0 29.8 276 42-422 114-413 (470)
21 PLN02153 epithiospecifier prot 99.9 9.5E-25 2.1E-29 226.1 26.3 259 85-422 4-287 (341)
22 KOG4693 Uncharacterized conser 99.8 2.6E-18 5.7E-23 163.0 20.9 280 28-396 3-312 (392)
23 KOG4693 Uncharacterized conser 99.8 5.6E-18 1.2E-22 160.8 16.1 232 23-336 50-312 (392)
24 KOG0379 Kelch repeat-containin 99.7 5.8E-15 1.3E-19 159.2 24.0 257 35-388 57-332 (482)
25 KOG0379 Kelch repeat-containin 99.5 1E-12 2.2E-17 141.9 20.1 213 98-398 60-287 (482)
26 KOG1230 Protein containing rep 99.4 2.4E-11 5.2E-16 122.3 17.2 220 109-395 78-316 (521)
27 KOG1230 Protein containing rep 99.3 1E-10 2.2E-15 117.8 18.5 255 36-368 64-347 (521)
28 KOG4152 Host cell transcriptio 99.3 8.4E-11 1.8E-15 120.8 16.7 276 87-396 16-342 (830)
29 COG3055 Uncharacterized protei 99.3 3.7E-10 8.1E-15 112.4 18.7 256 87-399 69-362 (381)
30 COG3055 Uncharacterized protei 99.2 6.2E-10 1.3E-14 110.9 19.3 240 27-338 70-361 (381)
31 KOG4152 Host cell transcriptio 99.2 7.5E-10 1.6E-14 113.9 17.9 275 22-336 12-342 (830)
32 PF07250 Glyoxal_oxid_N: Glyox 99.2 8.6E-10 1.9E-14 107.5 16.5 169 123-386 46-226 (243)
33 PF13964 Kelch_6: Kelch motif 98.9 4.7E-09 1E-13 76.9 5.9 50 315-375 1-50 (50)
34 PF13964 Kelch_6: Kelch motif 98.6 9.4E-08 2E-12 70.0 4.6 46 100-148 2-50 (50)
35 PF01344 Kelch_1: Kelch motif; 98.5 1.1E-07 2.4E-12 68.5 2.8 47 315-372 1-47 (47)
36 smart00612 Kelch Kelch domain. 98.4 2.7E-07 5.8E-12 66.0 4.5 45 328-383 1-45 (47)
37 smart00612 Kelch Kelch domain. 98.3 1.1E-06 2.3E-11 62.8 4.9 43 111-156 1-45 (47)
38 PF01344 Kelch_1: Kelch motif; 98.1 3.6E-06 7.9E-11 60.5 4.9 46 38-96 1-46 (47)
39 PF13418 Kelch_4: Galactose ox 98.1 2.2E-06 4.7E-11 62.4 3.3 48 315-372 1-48 (49)
40 PF13415 Kelch_3: Galactose ox 98.1 6.6E-06 1.4E-10 59.9 5.1 48 326-382 1-48 (49)
41 PF07646 Kelch_2: Kelch motif; 98.0 1E-05 2.3E-10 58.8 5.5 49 315-372 1-49 (49)
42 PF07646 Kelch_2: Kelch motif; 98.0 1.7E-05 3.7E-10 57.7 5.8 47 39-96 2-48 (49)
43 PF13415 Kelch_3: Galactose ox 97.9 1.8E-05 3.8E-10 57.6 4.9 44 109-155 1-48 (49)
44 PF13418 Kelch_4: Galactose ox 97.6 4.1E-05 8.9E-10 55.5 2.2 44 99-145 2-48 (49)
45 PRK11138 outer membrane biogen 97.6 0.11 2.5E-06 54.8 29.1 259 44-394 65-343 (394)
46 PRK13684 Ycf48-like protein; P 97.5 0.19 4.1E-06 52.1 32.1 196 135-395 118-322 (334)
47 PRK11138 outer membrane biogen 97.2 0.26 5.7E-06 52.0 26.3 244 79-394 131-384 (394)
48 PLN02772 guanylate kinase 97.1 0.0013 2.8E-08 68.5 8.1 71 314-396 23-96 (398)
49 PLN02772 guanylate kinase 96.9 0.0023 5.1E-08 66.6 7.8 68 98-169 24-97 (398)
50 KOG0286 G-protein beta subunit 96.6 0.82 1.8E-05 45.4 24.0 250 80-396 79-336 (343)
51 PRK11028 6-phosphogluconolacto 96.6 0.97 2.1E-05 46.3 27.5 139 79-229 13-158 (330)
52 PF10282 Lactonase: Lactonase, 96.5 0.7 1.5E-05 47.9 22.3 264 79-395 16-311 (345)
53 COG4257 Vgb Streptogramin lyas 96.4 1.1 2.4E-05 44.3 21.8 225 80-388 85-327 (353)
54 TIGR03866 PQQ_ABC_repeats PQQ- 96.4 1.2 2.5E-05 44.0 27.7 131 79-232 12-150 (300)
55 TIGR01640 F_box_assoc_1 F-box 96.3 0.46 9.9E-06 46.1 18.7 142 78-229 70-230 (230)
56 TIGR03866 PQQ_ABC_repeats PQQ- 95.9 1.9 4.1E-05 42.4 26.1 134 79-232 54-192 (300)
57 PF13854 Kelch_5: Kelch motif 95.8 0.02 4.4E-07 40.0 4.7 41 312-359 1-41 (42)
58 cd00200 WD40 WD40 domain, foun 95.7 2.1 4.4E-05 40.8 27.0 147 46-230 18-168 (289)
59 PF13854 Kelch_5: Kelch motif 95.4 0.041 8.8E-07 38.4 5.2 40 36-87 2-41 (42)
60 PRK11028 6-phosphogluconolacto 95.2 4.2 9.1E-05 41.5 28.7 92 80-175 59-153 (330)
61 KOG2437 Muskelin [Signal trans 95.2 0.023 5E-07 59.8 4.6 128 23-168 235-395 (723)
62 COG4257 Vgb Streptogramin lyas 95.1 3.8 8.3E-05 40.7 19.9 141 79-246 125-279 (353)
63 KOG0315 G-protein beta subunit 95.1 3.5 7.7E-05 40.2 19.7 218 78-360 61-290 (311)
64 TIGR03300 assembly_YfgL outer 94.7 6.5 0.00014 41.0 27.1 247 78-395 115-370 (377)
65 TIGR03300 assembly_YfgL outer 94.5 7.2 0.00016 40.7 25.8 54 79-140 76-131 (377)
66 KOG0310 Conserved WD40 repeat- 94.4 3.7 8E-05 43.4 18.3 47 80-131 135-184 (487)
67 PF08450 SGL: SMP-30/Gluconola 94.3 5.7 0.00012 38.7 19.2 86 48-164 11-102 (246)
68 PF14870 PSII_BNR: Photosynthe 94.2 1.2 2.6E-05 45.3 14.1 161 25-221 132-297 (302)
69 KOG0310 Conserved WD40 repeat- 93.6 9.1 0.0002 40.6 19.2 245 77-396 47-300 (487)
70 TIGR01640 F_box_assoc_1 F-box 93.1 2.3 5.1E-05 41.1 13.7 153 210-394 5-161 (230)
71 KOG0315 G-protein beta subunit 92.4 12 0.00025 36.7 19.8 97 295-423 148-249 (311)
72 KOG2437 Muskelin [Signal trans 92.3 0.13 2.7E-06 54.4 3.6 132 26-168 297-457 (723)
73 KOG0278 Serine/threonine kinas 92.1 0.93 2E-05 44.1 8.9 198 18-276 75-288 (334)
74 PTZ00421 coronin; Provisional 91.6 24 0.00052 38.6 22.1 50 79-131 99-156 (493)
75 PF08450 SGL: SMP-30/Gluconola 90.8 10 0.00023 36.8 15.5 140 81-231 63-217 (246)
76 PF07893 DUF1668: Protein of u 90.7 4.8 0.0001 41.8 13.4 116 108-233 75-213 (342)
77 PLN00181 protein SPA1-RELATED; 90.5 31 0.00067 40.1 21.4 233 104-396 489-729 (793)
78 PRK13684 Ycf48-like protein; P 90.4 24 0.00052 36.5 25.1 74 305-395 204-279 (334)
79 PF13360 PQQ_2: PQQ-like domai 88.9 22 0.00047 33.9 21.9 133 79-230 4-143 (238)
80 PF03089 RAG2: Recombination a 88.5 15 0.00033 36.7 14.0 182 142-392 82-281 (337)
81 PTZ00421 coronin; Provisional 88.0 26 0.00057 38.3 17.2 139 79-232 149-295 (493)
82 PF10282 Lactonase: Lactonase, 87.9 36 0.00078 35.2 22.7 278 23-369 21-332 (345)
83 PF07893 DUF1668: Protein of u 87.4 19 0.00041 37.4 15.1 85 40-145 68-167 (342)
84 PF14870 PSII_BNR: Photosynthe 87.3 37 0.0008 34.6 21.5 242 86-397 4-254 (302)
85 PTZ00420 coronin; Provisional 86.6 26 0.00056 39.1 16.2 136 79-230 149-296 (568)
86 KOG0266 WD40 repeat-containing 85.6 57 0.0012 35.2 23.0 83 80-168 183-267 (456)
87 COG5184 ATS1 Alpha-tubulin sup 85.5 56 0.0012 35.0 19.5 64 47-121 66-134 (476)
88 PTZ00420 coronin; Provisional 85.2 68 0.0015 35.8 21.8 25 104-131 131-156 (568)
89 KOG0291 WD40-repeat-containing 85.2 73 0.0016 36.1 25.3 50 79-131 331-380 (893)
90 PLN00033 photosystem II stabil 84.7 39 0.00085 35.9 16.0 122 82-221 264-392 (398)
91 cd00200 WD40 WD40 domain, foun 84.3 37 0.0008 31.9 24.0 135 79-232 74-212 (289)
92 KOG0278 Serine/threonine kinas 83.9 32 0.0007 33.8 13.3 134 106-276 108-245 (334)
93 KOG0296 Angio-associated migra 83.5 59 0.0013 33.6 18.4 132 79-232 87-225 (399)
94 PF13088 BNR_2: BNR repeat-lik 82.3 14 0.0003 36.4 11.1 154 43-215 113-275 (275)
95 PLN00181 protein SPA1-RELATED; 82.0 1.1E+02 0.0023 35.6 23.0 88 79-175 556-645 (793)
96 PRK01742 tolB translocation pr 81.8 77 0.0017 33.8 18.0 135 79-232 229-366 (429)
97 PF13360 PQQ_2: PQQ-like domai 80.6 53 0.0011 31.2 19.1 173 28-232 16-198 (238)
98 KOG0279 G protein beta subunit 80.2 47 0.001 33.2 13.1 136 79-230 86-225 (315)
99 PF13088 BNR_2: BNR repeat-lik 79.5 7.8 0.00017 38.3 8.1 125 22-163 140-275 (275)
100 PF12768 Rax2: Cortical protei 79.2 17 0.00036 36.7 10.2 102 22-143 21-130 (281)
101 COG1520 FOG: WD40-like repeat 77.2 96 0.0021 32.2 24.4 261 80-395 80-354 (370)
102 KOG0303 Actin-binding protein 74.2 67 0.0015 33.6 12.8 81 78-167 154-236 (472)
103 KOG0266 WD40 repeat-containing 71.9 1.5E+02 0.0032 32.1 16.0 134 79-230 269-412 (456)
104 PRK04792 tolB translocation pr 71.7 79 0.0017 34.0 13.8 92 78-175 286-377 (448)
105 KOG0286 G-protein beta subunit 71.6 1.2E+02 0.0026 30.7 23.1 203 79-335 120-335 (343)
106 PF07433 DUF1513: Protein of u 71.2 92 0.002 31.8 13.1 97 210-334 16-118 (305)
107 COG4447 Uncharacterized protei 71.1 1.2E+02 0.0026 30.5 17.7 51 6-57 10-63 (339)
108 KOG0271 Notchless-like WD40 re 71.1 6.6 0.00014 40.6 4.9 57 323-397 123-179 (480)
109 KOG0649 WD40 repeat protein [G 70.9 1.1E+02 0.0024 30.1 14.2 125 79-227 137-274 (325)
110 KOG0271 Notchless-like WD40 re 70.7 11 0.00023 39.1 6.3 51 78-131 137-187 (480)
111 PLN00033 photosystem II stabil 69.8 1.6E+02 0.0034 31.3 29.9 70 307-395 318-390 (398)
112 KOG0639 Transducin-like enhanc 67.5 40 0.00086 36.3 9.7 142 210-397 431-573 (705)
113 KOG0272 U4/U6 small nuclear ri 67.0 50 0.0011 34.7 10.2 112 47-189 313-426 (459)
114 KOG2055 WD40 repeat protein [G 66.5 1E+02 0.0022 33.0 12.4 129 79-228 281-418 (514)
115 PRK03629 tolB translocation pr 65.1 1.4E+02 0.003 31.9 14.0 84 79-169 312-395 (429)
116 PF15418 DUF4625: Domain of un 61.3 43 0.00094 29.7 7.6 91 428-522 13-115 (132)
117 PRK04792 tolB translocation pr 60.8 2.4E+02 0.0052 30.3 17.5 138 79-232 243-387 (448)
118 KOG0285 Pleiotropic regulator 60.7 1.6E+02 0.0035 30.6 12.3 92 219-360 215-309 (460)
119 KOG0316 Conserved WD40 repeat- 60.4 1.4E+02 0.0029 29.4 11.1 90 78-175 81-170 (307)
120 PRK05137 tolB translocation pr 59.5 1.9E+02 0.0041 30.8 13.9 83 78-166 270-352 (435)
121 PF00868 Transglut_N: Transglu 58.2 72 0.0016 27.6 8.4 75 441-521 29-115 (118)
122 TIGR02800 propeller_TolB tol-p 58.2 2.4E+02 0.0052 29.4 18.2 139 78-232 214-359 (417)
123 PLN02919 haloacid dehalogenase 57.8 91 0.002 37.6 11.9 59 104-168 809-879 (1057)
124 PF12768 Rax2: Cortical protei 57.5 54 0.0012 33.1 8.5 61 79-143 17-81 (281)
125 cd00216 PQQ_DH Dehydrogenases 56.4 3E+02 0.0064 30.0 15.1 27 207-233 58-87 (488)
126 PF03089 RAG2: Recombination a 56.3 38 0.00081 34.0 6.9 88 31-119 80-174 (337)
127 PF02239 Cytochrom_D1: Cytochr 55.2 2.5E+02 0.0055 29.4 13.5 79 79-167 17-97 (369)
128 KOG0289 mRNA splicing factor [ 54.9 2.9E+02 0.0062 29.5 13.2 122 202-373 350-474 (506)
129 PF08662 eIF2A: Eukaryotic tra 54.8 43 0.00093 31.6 7.0 80 79-167 84-163 (194)
130 cd02849 CGTase_C_term Cgtase ( 53.3 1.2E+02 0.0025 24.4 9.0 75 429-531 2-78 (81)
131 PRK04922 tolB translocation pr 51.8 2.9E+02 0.0063 29.3 13.7 81 79-166 317-397 (433)
132 PRK04922 tolB translocation pr 51.6 3.2E+02 0.007 29.0 14.2 81 79-165 273-353 (433)
133 PRK03629 tolB translocation pr 49.8 3.5E+02 0.0076 28.8 21.2 138 79-232 224-368 (429)
134 cd00094 HX Hemopexin-like repe 49.2 2.3E+02 0.0049 26.5 13.8 26 205-230 153-178 (194)
135 KOG1036 Mitotic spindle checkp 48.4 3.1E+02 0.0068 27.9 12.8 84 79-175 76-160 (323)
136 TIGR02800 propeller_TolB tol-p 48.2 3.4E+02 0.0074 28.2 14.4 91 79-175 259-349 (417)
137 PF07433 DUF1513: Protein of u 46.4 2.3E+02 0.0049 29.0 10.9 106 41-168 7-121 (305)
138 PRK02889 tolB translocation pr 46.1 3.9E+02 0.0085 28.3 18.1 138 79-232 221-365 (427)
139 PRK00178 tolB translocation pr 45.6 3.9E+02 0.0085 28.2 14.4 83 79-167 268-350 (430)
140 PF10633 NPCBM_assoc: NPCBM-as 45.2 54 0.0012 25.7 5.2 70 442-521 2-74 (78)
141 PRK05137 tolB translocation pr 44.5 4.1E+02 0.009 28.2 18.7 139 78-232 226-371 (435)
142 COG1520 FOG: WD40-like repeat 44.3 3.8E+02 0.0083 27.7 13.3 136 207-394 65-205 (370)
143 PRK01029 tolB translocation pr 44.3 1.3E+02 0.0027 32.3 9.4 61 78-142 351-411 (428)
144 PF07172 GRP: Glycine rich pro 44.2 12 0.00025 31.3 1.1 22 1-22 1-24 (95)
145 KOG0649 WD40 repeat protein [G 43.5 2.2E+02 0.0049 28.1 9.7 49 79-131 179-235 (325)
146 PF05096 Glu_cyclase_2: Glutam 43.4 1.7E+02 0.0038 29.1 9.4 99 41-168 47-149 (264)
147 KOG2055 WD40 repeat protein [G 42.6 4.6E+02 0.01 28.2 15.8 59 105-169 264-325 (514)
148 KOG0291 WD40-repeat-containing 40.6 2.2E+02 0.0047 32.5 10.3 94 47-165 445-538 (893)
149 TIGR03075 PQQ_enz_alc_DH PQQ-d 40.0 1.9E+02 0.0042 31.9 10.2 81 79-164 80-171 (527)
150 TIGR03075 PQQ_enz_alc_DH PQQ-d 39.3 1.4E+02 0.003 33.0 9.0 94 266-393 69-172 (527)
151 PRK02889 tolB translocation pr 39.0 3.9E+02 0.0084 28.4 12.2 84 78-167 264-347 (427)
152 KOG0647 mRNA export protein (c 38.4 4.4E+02 0.0094 26.9 11.1 127 79-230 51-187 (347)
153 KOG0296 Angio-associated migra 38.2 2E+02 0.0043 29.9 8.9 50 79-131 171-220 (399)
154 KOG0272 U4/U6 small nuclear ri 37.1 67 0.0014 33.9 5.5 81 81-169 286-367 (459)
155 KOG0263 Transcription initiati 37.1 1.3E+02 0.0029 33.9 8.1 88 79-175 558-646 (707)
156 PRK01742 tolB translocation pr 35.5 5.6E+02 0.012 27.1 21.3 54 322-396 339-392 (429)
157 TIGR03437 Soli_cterm Solibacte 34.7 79 0.0017 30.5 5.4 37 496-535 179-215 (215)
158 TIGR02658 TTQ_MADH_Hv methylam 34.6 5.5E+02 0.012 26.8 24.0 52 292-360 278-332 (352)
159 PF13540 RCC1_2: Regulator of 34.5 34 0.00073 21.7 1.9 21 376-397 8-28 (30)
160 KOG0289 mRNA splicing factor [ 34.3 2.7E+02 0.0059 29.7 9.4 83 79-167 412-495 (506)
161 PRK00178 tolB translocation pr 33.4 5.9E+02 0.013 26.8 19.0 138 79-232 224-368 (430)
162 KOG0305 Anaphase promoting com 32.9 6.9E+02 0.015 27.3 20.5 80 79-170 198-281 (484)
163 KOG3881 Uncharacterized conser 31.6 2.3E+02 0.005 29.7 8.2 109 109-230 160-280 (412)
164 KOG0282 mRNA splicing factor [ 31.2 2.3E+02 0.0051 30.5 8.4 25 206-230 439-465 (503)
165 TIGR02608 delta_60_rpt delta-6 31.0 41 0.00088 25.0 2.1 35 320-360 5-39 (55)
166 PRK04043 tolB translocation pr 29.3 4.7E+02 0.01 27.8 10.8 81 79-165 214-295 (419)
167 KOG0300 WD40 repeat-containing 29.1 6.5E+02 0.014 25.8 13.7 134 79-240 295-437 (481)
168 KOG1036 Mitotic spindle checkp 28.9 4.4E+02 0.0095 26.9 9.5 86 79-177 117-209 (323)
169 PLN02919 haloacid dehalogenase 28.8 2.2E+02 0.0047 34.5 8.9 65 45-131 811-888 (1057)
170 PF03178 CPSF_A: CPSF A subuni 28.7 2.4E+02 0.0053 28.5 8.2 86 79-172 108-196 (321)
171 PF02239 Cytochrom_D1: Cytochr 28.3 7E+02 0.015 26.0 13.4 277 79-422 59-350 (369)
172 KOG0646 WD40 repeat protein [G 28.2 7.8E+02 0.017 26.5 15.8 53 107-170 90-146 (476)
173 PF10670 DUF4198: Domain of un 28.1 3.6E+02 0.0078 25.2 8.9 68 436-522 144-211 (215)
174 KOG1427 Uncharacterized conser 27.3 1.3E+02 0.0028 30.5 5.5 90 379-488 121-214 (443)
175 PF13570 PQQ_3: PQQ-like domai 27.2 1.4E+02 0.003 19.9 4.2 23 323-359 18-40 (40)
176 PF06433 Me-amine-dh_H: Methyl 27.0 2.9E+02 0.0063 28.6 8.2 136 78-235 118-285 (342)
177 PF08268 FBA_3: F-box associat 26.9 4.1E+02 0.0088 22.8 8.3 77 47-141 4-87 (129)
178 KOG2321 WD40 repeat protein [G 26.6 7.9E+02 0.017 27.4 11.4 153 351-525 156-335 (703)
179 KOG0308 Conserved WD40 repeat- 25.8 3.2E+02 0.0069 30.7 8.5 121 21-169 92-235 (735)
180 PF06433 Me-amine-dh_H: Methyl 25.5 5.4E+02 0.012 26.7 9.8 32 201-232 37-80 (342)
181 PF01436 NHL: NHL repeat; Int 25.0 1.4E+02 0.0031 18.4 3.6 15 202-216 3-18 (28)
182 PRK04043 tolB translocation pr 24.6 8.7E+02 0.019 25.8 13.6 79 78-165 301-385 (419)
183 PF03088 Str_synth: Strictosid 24.6 1.5E+02 0.0033 24.3 4.7 65 47-115 7-73 (89)
184 COG3490 Uncharacterized protei 24.5 4.5E+02 0.0096 26.8 8.6 82 79-164 92-178 (366)
185 PRK01029 tolB translocation pr 24.4 8.8E+02 0.019 25.8 12.0 57 104-165 332-388 (428)
186 KOG0263 Transcription initiati 24.4 1.9E+02 0.0042 32.7 6.7 86 22-131 555-649 (707)
187 PF14517 Tachylectin: Tachylec 24.3 2.8E+02 0.0062 27.0 7.2 104 104-216 86-194 (229)
188 COG3490 Uncharacterized protei 23.6 4.2E+02 0.0091 26.9 8.2 91 311-420 108-203 (366)
189 smart00120 HX Hemopexin-like r 23.4 1.5E+02 0.0032 20.1 3.8 23 206-228 5-27 (45)
190 PF00400 WD40: WD domain, G-be 23.0 1.3E+02 0.0027 19.4 3.3 24 103-129 16-39 (39)
191 cd00216 PQQ_DH Dehydrogenases 22.8 4E+02 0.0087 28.9 9.0 96 266-393 61-163 (488)
192 KOG0301 Phospholipase A2-activ 22.4 1.2E+03 0.026 26.6 14.5 185 101-365 105-292 (745)
193 KOG0282 mRNA splicing factor [ 22.4 2.9E+02 0.0062 29.8 7.2 48 79-131 281-330 (503)
194 KOG0276 Vesicle coat complex C 21.8 8.2E+02 0.018 27.6 10.6 50 79-131 208-257 (794)
195 KOG0639 Transducin-like enhanc 21.8 2.1E+02 0.0046 31.0 6.1 105 43-175 471-578 (705)
196 KOG0305 Anaphase promoting com 21.6 8.9E+02 0.019 26.5 11.0 53 206-276 224-279 (484)
197 PF08662 eIF2A: Eukaryotic tra 21.2 2E+02 0.0044 26.9 5.5 55 46-118 109-163 (194)
198 KOG0647 mRNA export protein (c 20.7 5.9E+02 0.013 26.0 8.6 50 78-131 94-145 (347)
199 KOG0308 Conserved WD40 repeat- 20.5 5.6E+02 0.012 28.9 9.1 54 324-395 180-233 (735)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=6.5e-44 Score=344.99 Aligned_cols=232 Identities=58% Similarity=1.074 Sum_probs=207.5
Q ss_pred eEEEEeeCCeEEEEecCCCCCCCCCCCCCcc--------ccCCCCceeEEEECCCCCEEECccccccccccceecCCCcE
Q 009420 41 MHMQLLNNDRVVMFDRSDFGPSNLSLPPGKC--------LKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVL 112 (535)
Q Consensus 41 ~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~--------~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l 112 (535)
||+++++++||+++++.+.|++++.+|+|+| .+.||.+++.+|||.|++++++...++.||+++++|+||++
T Consensus 1 mh~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~l 80 (243)
T PF07250_consen 1 MHMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRL 80 (243)
T ss_pred CeEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCE
Confidence 6999999999999999999999999999999 55789999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCeEEEEcCCC-CCCCCceecC-CCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCC-CCCeeeeccc
Q 009420 113 IQTGGFNDGEKKIRSFVPCN-DESCDWKEID-GLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNG-APNVYSLPFL 189 (535)
Q Consensus 113 ~v~GG~~~g~~~v~~ydp~~-~~~~~W~~~~-~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~-~~~w~~~~~l 189 (535)
+++||+.+|.+.++.|+|++ +++++|.+.+ .|..+|||+++++|+||+|+|+||+..+++|+||+.. ......+++|
T Consensus 81 l~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l 160 (243)
T PF07250_consen 81 LQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFL 160 (243)
T ss_pred EEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecc
Confidence 99999998999999999984 3458999987 6999999999999999999999999999999997642 2334455666
Q ss_pred cccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEE
Q 009420 190 VQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEV 269 (535)
Q Consensus 190 ~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkI 269 (535)
..+.+ ..+.++||+++++|||+||+++++.+++||++++++.+.+|.||++ .|.||.+|++|||||.-...+++..+|
T Consensus 161 ~~~~~-~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~-~R~YP~sgssvmLPl~~~~~~~~~~ev 238 (243)
T PF07250_consen 161 SQTSD-TLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGG-PRNYPASGSSVMLPLTDTPPNNYTAEV 238 (243)
T ss_pred hhhhc-cCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCC-ceecCCCcceEEecCccCCCCCCCeEE
Confidence 55544 2678999999999999999999999999999999987789999998 899999999999999212367889999
Q ss_pred EEEcC
Q 009420 270 LVCGG 274 (535)
Q Consensus 270 yv~GG 274 (535)
+||||
T Consensus 239 lvCGG 243 (243)
T PF07250_consen 239 LVCGG 243 (243)
T ss_pred EEeCC
Confidence 99998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=344.29 Aligned_cols=268 Identities=21% Similarity=0.321 Sum_probs=223.0
Q ss_pred eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCC---CCC
Q 009420 47 NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFND---GEK 123 (535)
Q Consensus 47 ~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~---g~~ 123 (535)
..+.+|++||...... ....+++|||.+++|..++.++.++|..++++.+|+|||+||++. ..+
T Consensus 283 ~~~~l~~vGG~~~~~~-------------~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~ 349 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQ-------------SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLS 349 (571)
T ss_pred CCCeEEEECCCCCCCc-------------ccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccc
Confidence 4689999999762011 346799999999999999998888888888888999999999973 358
Q ss_pred eEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCccCC----eeEEE-eCCCCCCeeee-ccccccCCccc
Q 009420 124 KIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRRQF----NYEFY-PKNGAPNVYSL-PFLVQTNDPRV 197 (535)
Q Consensus 124 ~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~----~~E~y-P~~~~~~w~~~-~~l~~~~~~~~ 197 (535)
++++|||. +++|+.+++|+.+|+.++++++ +|+||++||.++. ++|+| |.++ +|... |++..
T Consensus 350 ~ve~YD~~---~~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~------ 417 (571)
T KOG4441|consen 350 SVERYDPR---TNQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTR------ 417 (571)
T ss_pred eEEEecCC---CCceeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCC--cccccCCCCcc------
Confidence 99999999 9999999999999999999999 8999999999863 68999 9876 89754 44322
Q ss_pred cCCCcceEEEeeCCcEEEEec--------CeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEE
Q 009420 198 ENNLYPFVFLNVDGFLFIFAN--------NRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEV 269 (535)
Q Consensus 198 ~~~~yp~~~~~~dG~ifv~gg--------~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkI 269 (535)
.+-+.++..+|+||++|| +++++|||.+|+|. .+|+|+. +|.+. |++++ +++|
T Consensus 418 ---r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~--~R~~~--g~a~~-----------~~~i 478 (571)
T KOG4441|consen 418 ---RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMNT--RRSGF--GVAVL-----------NGKI 478 (571)
T ss_pred ---eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-ecCCccc--ccccc--eEEEE-----------CCEE
Confidence 255788889999999998 46899999999999 5887775 67764 55554 9999
Q ss_pred EEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCC
Q 009420 270 LVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDP 348 (535)
Q Consensus 270 yv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~ 348 (535)
|++||.+. . -...++|+|||.. ++|+.. +|+.+|..++++++ +++||++||.+ |. ..
T Consensus 479 YvvGG~~~-~----------~~~~~VE~ydp~~--~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~-~~-------~~ 536 (571)
T KOG4441|consen 479 YVVGGFDG-T----------SALSSVERYDPET--NQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFD-GN-------NN 536 (571)
T ss_pred EEECCccC-C----------CccceEEEEcCCC--CceeEcccCccccccccEEEE-CCEEEEEeccc-Cc-------cc
Confidence 99999874 2 1467799999985 999999 99999999986655 99999999966 32 23
Q ss_pred ccccEEEeCCCCCCCceeecCCCCCCcccccceee
Q 009420 349 VLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVL 383 (535)
Q Consensus 349 ~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~L 383 (535)
+.++|+|||++| +|+...++...|...+++++
T Consensus 537 l~~ve~ydp~~d---~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 537 LNTVECYDPETD---TWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred cceeEEcCCCCC---ceeeCCCccccccCcceEEe
Confidence 568999999999 99999998888887666554
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=317.87 Aligned_cols=250 Identities=22% Similarity=0.374 Sum_probs=204.5
Q ss_pred CCcEEEEcCCCC---CCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCcc-C----CeeEEE-eCCC
Q 009420 109 DGVLIQTGGFND---GEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRR-Q----FNYEFY-PKNG 179 (535)
Q Consensus 109 dG~l~v~GG~~~---g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~-~----~~~E~y-P~~~ 179 (535)
.+.|+++||... ..++++.|||. +++|..+++|+.+|..++++++ +|+|||+||.+ + .++|+| |.++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~---~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPK---TNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCC---cCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 689999999873 25799999999 8999999999999999999988 79999999998 3 368999 8876
Q ss_pred CCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecC-------eEEEEECCCCeEEEecCCCCCCCCCCCCCCCce
Q 009420 180 APNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANN-------RAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSA 252 (535)
Q Consensus 180 ~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~-------~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~ 252 (535)
+|...+.|...+ .-+.++..+|+||++||. ++|+|||.+|+|. ..++|+. +|..+ |++
T Consensus 360 --~W~~~a~M~~~R--------~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~--~r~~~--gv~ 424 (571)
T KOG4441|consen 360 --QWTPVAPMNTKR--------SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLT--RRSGH--GVA 424 (571)
T ss_pred --ceeccCCccCcc--------ccceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCc--ceeee--EEE
Confidence 798765443322 235677889999999984 5999999999999 5776664 46532 445
Q ss_pred EeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEE
Q 009420 253 VLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLL 331 (535)
Q Consensus 253 v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~v 331 (535)
++ +++||++||.+... ..++++|+|||.. ++|+.. +|+.+|.+++++++ +|+||+
T Consensus 425 ~~-----------~g~iYi~GG~~~~~----------~~l~sve~YDP~t--~~W~~~~~M~~~R~~~g~a~~-~~~iYv 480 (571)
T KOG4441|consen 425 VL-----------GGKLYIIGGGDGSS----------NCLNSVECYDPET--NTWTLIAPMNTRRSGFGVAVL-NGKIYV 480 (571)
T ss_pred EE-----------CCEEEEEcCcCCCc----------cccceEEEEcCCC--CceeecCCcccccccceEEEE-CCEEEE
Confidence 43 99999999987322 1478999999985 999998 99999999997665 999999
Q ss_pred EcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecCCCCccccccCCCCCcee
Q 009420 332 INGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGSNPHAYYNFTGVLFPTEL 411 (535)
Q Consensus 332 vGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG~~~~~~~~~~~~~~~~~ 411 (535)
+||.+ +. ....++|.|||.++ +|+.+++|+.+|..++++++ ++++|+.||..... ...
T Consensus 481 vGG~~-~~-------~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~---------~l~ 538 (571)
T KOG4441|consen 481 VGGFD-GT-------SALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNN---------NLN 538 (571)
T ss_pred ECCcc-CC-------CccceEEEEcCCCC---ceeEcccCccccccccEEEE--CCEEEEEecccCcc---------ccc
Confidence 99987 32 23457999999999 99999999999999888776 99999999954332 256
Q ss_pred eEEEEcCCCCCC
Q 009420 412 SLEAFSPYYLDA 423 (535)
Q Consensus 412 ~vE~y~Ppyl~~ 423 (535)
+||.|+|..=.+
T Consensus 539 ~ve~ydp~~d~W 550 (571)
T KOG4441|consen 539 TVECYDPETDTW 550 (571)
T ss_pred eeEEcCCCCCce
Confidence 899999887543
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=317.22 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=198.5
Q ss_pred ccCCCceEEcccCCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccc
Q 009420 23 DAAGGGWQLLQKSIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCS 102 (535)
Q Consensus 23 ~~~~g~W~~l~~~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~ 102 (535)
++..++|..+++++..+..|++++.+++||++||.+.+.. ....+++|||.+++|+.++.++..++.
T Consensus 278 d~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~-------------~~~~v~~Yd~~~n~W~~~~~m~~~R~~ 344 (557)
T PHA02713 278 NINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNP-------------SLNKVYKINIENKIHVELPPMIKNRCR 344 (557)
T ss_pred eCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCC-------------ccceEEEEECCCCeEeeCCCCcchhhc
Confidence 5667899999999888888888889999999999642111 235789999999999999987766666
Q ss_pred cceecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCCC
Q 009420 103 SGAVRPDGVLIQTGGFNDG--EKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGA 180 (535)
Q Consensus 103 ~~~~l~dG~l~v~GG~~~g--~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~ 180 (535)
.+++..+|+||++||.... .+++++|||. +++|+.+++|+.+|..++++++ +|+|||+||.+...
T Consensus 345 ~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~---~~~W~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~~~--------- 411 (557)
T PHA02713 345 FSLAVIDDTIYAIGGQNGTNVERTIECYTMG---DDKWKMLPDMPIALSSYGMCVL-DQYIYIIGGRTEHI--------- 411 (557)
T ss_pred eeEEEECCEEEEECCcCCCCCCceEEEEECC---CCeEEECCCCCcccccccEEEE-CCEEEEEeCCCccc---------
Confidence 6667779999999998532 5789999999 9999999999999999998888 89999999976421
Q ss_pred CCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeeccccc
Q 009420 181 PNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNL 260 (535)
Q Consensus 181 ~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~ 260 (535)
.|.....+... + ..++. ..-+++++|||.+|+|+ .+++|+. +|..+ +++++
T Consensus 412 -~~~~~~~~~~~-~-------------~~~~~---~~~~~ve~YDP~td~W~-~v~~m~~--~r~~~--~~~~~------ 462 (557)
T PHA02713 412 -DYTSVHHMNSI-D-------------MEEDT---HSSNKVIRYDTVNNIWE-TLPNFWT--GTIRP--GVVSH------ 462 (557)
T ss_pred -ccccccccccc-c-------------ccccc---cccceEEEECCCCCeEe-ecCCCCc--ccccC--cEEEE------
Confidence 01000000000 0 00000 00124899999999999 5887775 46643 45543
Q ss_pred CCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCCCC
Q 009420 261 LAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKGT 339 (535)
Q Consensus 261 ~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~ 339 (535)
+++||++||.+... ...+++|+|||.. .++|+.. +|+.+|..++++++ +|+||++||.+ |.
T Consensus 463 -----~~~IYv~GG~~~~~----------~~~~~ve~Ydp~~-~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~-~~ 524 (557)
T PHA02713 463 -----KDDIYVVCDIKDEK----------NVKTCIFRYNTNT-YNGWELITTTESRLSALHTILH-DNTIMMLHCYE-SY 524 (557)
T ss_pred -----CCEEEEEeCCCCCC----------ccceeEEEecCCC-CCCeeEccccCcccccceeEEE-CCEEEEEeeec-ce
Confidence 89999999975211 1235689999983 2699998 99999999987766 99999999976 31
Q ss_pred CCcccCCCCccccEEEeCCCCCCCceeecCCC
Q 009420 340 AGWELGRDPVLAPVVYRPDNIPGSRFDLQNPS 371 (535)
Q Consensus 340 ~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~ 371 (535)
.++|+|||.++ +|+.+++.
T Consensus 525 ----------~~~e~yd~~~~---~W~~~~~~ 543 (557)
T PHA02713 525 ----------MLQDTFNVYTY---EWNHICHQ 543 (557)
T ss_pred ----------eehhhcCcccc---cccchhhh
Confidence 26899999999 99999875
No 5
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2e-34 Score=315.41 Aligned_cols=252 Identities=15% Similarity=0.159 Sum_probs=193.8
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCCceecCCCCcccccceEEE
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFND---GEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHI 155 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~---g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~ 155 (535)
.+++|||.+++|+.++.++..++..+++..+++|||+||... ..+++++|||. +++|.++++|+.+|.++++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~---~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE---NKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC---CCeEeeCCCCcchhhceeEEE
Confidence 578999999999999876655544455556999999999742 25789999999 899999999999999999888
Q ss_pred ecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEec
Q 009420 156 LPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQY 235 (535)
Q Consensus 156 L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~ 235 (535)
+ +|+|||+||.++.. .+ +++|+|||.+|+|. .+
T Consensus 350 ~-~g~IYviGG~~~~~----------------~~-----------------------------~sve~Ydp~~~~W~-~~ 382 (557)
T PHA02713 350 I-DDTIYAIGGQNGTN----------------VE-----------------------------RTIECYTMGDDKWK-ML 382 (557)
T ss_pred E-CCEEEEECCcCCCC----------------CC-----------------------------ceEEEEECCCCeEE-EC
Confidence 8 89999999975321 01 03799999999999 58
Q ss_pred CCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCc-ccc-c-ccc----cccccCCceEEEEecCCCCCee
Q 009420 236 PAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGA-YEQ-A-EKG----VFVAALNTCARIKITDPTPTWV 308 (535)
Q Consensus 236 p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~-~~~-~-~~~----~~~pa~~s~e~~d~~~~~~~W~ 308 (535)
++||. +|..+ +++++ +++||++||.+... +.. . .+. .....++++|+|||.. ++|+
T Consensus 383 ~~mp~--~r~~~--~~~~~-----------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t--d~W~ 445 (557)
T PHA02713 383 PDMPI--ALSSY--GMCVL-----------DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN--NIWE 445 (557)
T ss_pred CCCCc--ccccc--cEEEE-----------CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC--CeEe
Confidence 88886 46643 44443 89999999975210 000 0 000 0001257899999985 8999
Q ss_pred ee-cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCC-CCCCceeecCCCCCCcccccceeecCC
Q 009420 309 LE-TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDN-IPGSRFDLQNPSTIPRMYHSTAVLLRD 386 (535)
Q Consensus 309 ~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t-~~g~~Wt~~~~~~~~R~yhs~a~LlpD 386 (535)
.. +|+.+|..++++++ +|+|||+||.+ +.. .-...+|+|||++ + +|+.+++|+.+|..|+++++ |
T Consensus 446 ~v~~m~~~r~~~~~~~~-~~~IYv~GG~~-~~~------~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~~~--~ 512 (557)
T PHA02713 446 TLPNFWTGTIRPGVVSH-KDDIYVVCDIK-DEK------NVKTCIFRYNTNTYN---GWELITTTESRLSALHTILH--D 512 (557)
T ss_pred ecCCCCcccccCcEEEE-CCEEEEEeCCC-CCC------ccceeEEEecCCCCC---CeeEccccCcccccceeEEE--C
Confidence 98 99999999987665 99999999975 211 1123579999999 9 99999999999999998887 9
Q ss_pred CcEEEecCCCCccccccCCCCCceeeEEEEcCCCCC
Q 009420 387 GRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLD 422 (535)
Q Consensus 387 G~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl~ 422 (535)
|+|||+||.... ..+|+|+|..=-
T Consensus 513 ~~iyv~Gg~~~~------------~~~e~yd~~~~~ 536 (557)
T PHA02713 513 NTIMMLHCYESY------------MLQDTFNVYTYE 536 (557)
T ss_pred CEEEEEeeecce------------eehhhcCccccc
Confidence 999999996431 268999987743
No 6
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=7.2e-34 Score=237.28 Aligned_cols=98 Identities=24% Similarity=0.325 Sum_probs=88.3
Q ss_pred CCCCCCceecCC-CccccccCCeEEEEEEecCccccceEEEEEEecCCccccCCCCcceEEeeeeeeeecCCcceEEEEE
Q 009420 425 FANLRPTIVLPE-SQFTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSGYEIVVN 503 (535)
Q Consensus 425 ~~~~RP~i~~~p-~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~ 503 (535)
..+.||+|+++| .+ ++||++|+|+++. .+.+|+|+|++|+||++|||||+|+|+++. ..+ ..++++
T Consensus 2 ~~a~RP~I~~~p~~~--i~yG~~f~v~~~~------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~--~~~---~~~~v~ 68 (101)
T cd02851 2 TLASRPVITSASTQT--AKVGDTITVSTDS------PISSASLVRYGSATHTVNTDQRRIPLTLFS--VGG---NSYSVQ 68 (101)
T ss_pred CCCCCCeeccCCccc--cccCCEEEEEEec------cceEEEEEecccccccccCCccEEEeeeEe--cCC---CEEEEE
Confidence 567899999999 77 9999999999872 579999999999999999999999999975 222 478888
Q ss_pred cCCCCCcCCCcceEEEEEc-CCcCCccEEEEeC
Q 009420 504 SPGSGNLAPSGYYLLFVVH-QDVPSEGIWVHVQ 535 (535)
Q Consensus 504 ~P~~~~~~ppG~ymlf~~~-~gvPS~a~~v~i~ 535 (535)
+|+|++|+|||||||||++ +||||+|+||+|+
T Consensus 69 ~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 69 IPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred cCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 9999999999999999995 8999999999985
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6e-32 Score=280.50 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=193.1
Q ss_pred ccCCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEEC--CCCCEEECcccc-ccccccceecCC
Q 009420 33 QKSIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSV--LTNEFRPLFVQS-NVWCSSGAVRPD 109 (535)
Q Consensus 33 ~~~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp--~t~~w~~~~~~~-~~~c~~~~~l~d 109 (535)
++++..+..+++++.+++|||+||.. . ..+.+||+ .+++|+.++.++ ..++..+++..+
T Consensus 2 ~~lp~~~~~~~~~~~~~~vyv~GG~~-~-----------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~ 63 (346)
T TIGR03547 2 PDLPVGFKNGTGAIIGDKVYVGLGSA-G-----------------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID 63 (346)
T ss_pred CCCCccccCceEEEECCEEEEEcccc-C-----------------CeeEEEECCCCCCCceECCCCCCCCcccceEEEEC
Confidence 45565666677777899999999953 0 24678885 678999999765 455555566679
Q ss_pred CcEEEEcCCCC--------CCCeEEEEcCCCCCCCCceecC-CCCcccccceEEEecCCcEEEEcCccCCe-------eE
Q 009420 110 GVLIQTGGFND--------GEKKIRSFVPCNDESCDWKEID-GLGARRWYATDHILPDGRIIIIGGRRQFN-------YE 173 (535)
Q Consensus 110 G~l~v~GG~~~--------g~~~v~~ydp~~~~~~~W~~~~-~m~~~R~y~s~~~L~dG~vyvvGG~~~~~-------~E 173 (535)
++|||+||... ..+++++|||. +++|++++ .|+.+|..++++++.+|+|||+||.+... .+
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~---~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~ 140 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPK---KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLS 140 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECC---CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHh
Confidence 99999999742 14689999999 99999997 56677766666634489999999986321 11
Q ss_pred EE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCce
Q 009420 174 FY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSA 252 (535)
Q Consensus 174 ~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~ 252 (535)
.| +..+ .|... +..- ... + ..+. ...+.+|+|||.+++|+ .+++||.. +|..+ +++
T Consensus 141 ~~~~~~~--~~~~~--~~~~------~~~-~-----~~~~---~~~~~v~~YDp~t~~W~-~~~~~p~~-~r~~~--~~~ 197 (346)
T TIGR03547 141 AADKDSE--PKDKL--IAAY------FSQ-P-----PEDY---FWNKNVLSYDPSTNQWR-NLGENPFL-GTAGS--AIV 197 (346)
T ss_pred hcCccch--hhhhh--HHHH------hCC-C-----hhHc---CccceEEEEECCCCcee-ECccCCCC-cCCCc--eEE
Confidence 22 1110 11000 0000 000 0 0000 00135899999999999 58877742 34421 233
Q ss_pred EeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCCce-------eceeEEc
Q 009420 253 VLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRV-------MGDMTLL 324 (535)
Q Consensus 253 v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~-------~~~~v~l 324 (535)
+ .++|||++||..... ..+..+++||+....++|+.. +|+.+|. .+.+++
T Consensus 198 ~-----------~~~~iyv~GG~~~~~----------~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~- 255 (346)
T TIGR03547 198 H-----------KGNKLLLINGEIKPG----------LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGI- 255 (346)
T ss_pred E-----------ECCEEEEEeeeeCCC----------ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeE-
Confidence 3 389999999975211 113345667765445799988 9988763 333344
Q ss_pred cCCeEEEEcCCCCCCC------C--ccc-CCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecCC
Q 009420 325 PNGNVLLINGAGKGTA------G--WEL-GRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGSN 395 (535)
Q Consensus 325 pdG~I~vvGG~~~g~~------g--~~~-~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG~ 395 (535)
.+|+|||+||...... + +.. ....+.++|+|||+++ +|+.+++|+.+|.+|+++++ +++|||+||.
T Consensus 256 ~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~ 330 (346)
T TIGR03547 256 SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKLPQGLAYGVSVSW--NNGVLLIGGE 330 (346)
T ss_pred ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCCCCCceeeEEEEc--CCEEEEEecc
Confidence 5999999999752100 0 000 0112346899999999 99999999999998865544 9999999997
Q ss_pred CCc
Q 009420 396 PHA 398 (535)
Q Consensus 396 ~~~ 398 (535)
...
T Consensus 331 ~~~ 333 (346)
T TIGR03547 331 NSG 333 (346)
T ss_pred CCC
Confidence 543
No 8
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.4e-31 Score=277.73 Aligned_cols=319 Identities=15% Similarity=0.141 Sum_probs=199.3
Q ss_pred CceEEcccCCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECC--CCCEEECcccc-cccccc
Q 009420 27 GGWQLLQKSIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVL--TNEFRPLFVQS-NVWCSS 103 (535)
Q Consensus 27 g~W~~l~~~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~--t~~w~~~~~~~-~~~c~~ 103 (535)
-.++.+++||..+..+++++.+++||++||.. . ..+.+||+. +++|++++.++ ..++..
T Consensus 17 ~~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~-~-----------------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~ 78 (376)
T PRK14131 17 ANAEQLPDLPVPFKNGTGAIDNNTVYVGLGSA-G-----------------TSWYKLDLNAPSKGWTKIAAFPGGPREQA 78 (376)
T ss_pred eecccCCCCCcCccCCeEEEECCEEEEEeCCC-C-----------------CeEEEEECCCCCCCeEECCcCCCCCcccc
Confidence 34677777776666567777899999999853 1 135788876 58899998653 344444
Q ss_pred ceecCCCcEEEEcCCCC----C----CCeEEEEcCCCCCCCCceecCC-CCcccccceEEEecCCcEEEEcCccCCee-E
Q 009420 104 GAVRPDGVLIQTGGFND----G----EKKIRSFVPCNDESCDWKEIDG-LGARRWYATDHILPDGRIIIIGGRRQFNY-E 173 (535)
Q Consensus 104 ~~~l~dG~l~v~GG~~~----g----~~~v~~ydp~~~~~~~W~~~~~-m~~~R~y~s~~~L~dG~vyvvGG~~~~~~-E 173 (535)
.++..+++|||+||... + .+++++|||. +++|+.+++ ++.+|..++++++.|++|||+||.+.... +
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~---~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~ 155 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK---TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDG 155 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC---CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHH
Confidence 55566999999999753 1 3679999999 999999985 46677777777745999999999753210 0
Q ss_pred EE-eC--CCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCC
Q 009420 174 FY-PK--NGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSG 250 (535)
Q Consensus 174 ~y-P~--~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g 250 (535)
.+ +. .....+...... . .++. . ...-| .-.+.+++|||.+|+|. .++++|.. +|.. .
T Consensus 156 ~~~d~~~~~~~~~~~~~i~-~--------~~~~----~-~~~~~-~~~~~v~~YD~~t~~W~-~~~~~p~~-~~~~---~ 215 (376)
T PRK14131 156 YFEDLAAAGKDKTPKDKIN-D--------AYFD----K-KPEDY-FFNKEVLSYDPSTNQWK-NAGESPFL-GTAG---S 215 (376)
T ss_pred HHhhhhhcccchhhhhhhH-H--------HHhc----C-Chhhc-CcCceEEEEECCCCeee-ECCcCCCC-CCCc---c
Confidence 00 00 000000000000 0 0000 0 00000 00134899999999999 47777742 3432 1
Q ss_pred ceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCCcee-------ceeE
Q 009420 251 SAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVM-------GDMT 322 (535)
Q Consensus 251 ~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~-------~~~v 322 (535)
+++. .+++||++||...... .+..+..+++....++|+.. +|+.+|.. +.++
T Consensus 216 a~v~----------~~~~iYv~GG~~~~~~----------~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a 275 (376)
T PRK14131 216 AVVI----------KGNKLWLINGEIKPGL----------RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFA 275 (376)
T ss_pred eEEE----------ECCEEEEEeeeECCCc----------CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEec
Confidence 2222 3899999999642110 12233333332224899998 99988742 1113
Q ss_pred EccCCeEEEEcCCCCCCC------C--cc-cCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEec
Q 009420 323 LLPNGNVLLINGAGKGTA------G--WE-LGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGG 393 (535)
Q Consensus 323 ~lpdG~I~vvGG~~~g~~------g--~~-~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~G 393 (535)
++.+++|||+||...... + +. .....+.++|+|||+++ +|+.+++|+.+|.+|+++++ +++|||+|
T Consensus 276 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~r~~~~av~~--~~~iyv~G 350 (376)
T PRK14131 276 GYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGELPQGLAYGVSVSW--NNGVLLIG 350 (376)
T ss_pred eeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcCCCCccceEEEEe--CCEEEEEc
Confidence 445999999999752110 0 00 00112346899999999 99999999999999965544 99999999
Q ss_pred CCCCccccccCCCCCceeeEEEEcCC
Q 009420 394 SNPHAYYNFTGVLFPTELSLEAFSPY 419 (535)
Q Consensus 394 G~~~~~~~~~~~~~~~~~~vE~y~Pp 419 (535)
|...... ...+|++|.|.
T Consensus 351 G~~~~~~--------~~~~v~~~~~~ 368 (376)
T PRK14131 351 GETAGGK--------AVSDVTLLSWD 368 (376)
T ss_pred CCCCCCc--------EeeeEEEEEEc
Confidence 9754321 24578888765
No 9
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=100.00 E-value=3.2e-33 Score=233.93 Aligned_cols=97 Identities=42% Similarity=0.720 Sum_probs=68.2
Q ss_pred CCceecCCCccccccCCeEEEEEEecCccccceEEEEEEecCCccccCCCCcceEEeeeeeeeecCCcceEEEEEcCCCC
Q 009420 429 RPTIVLPESQFTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSGYEIVVNSPGSG 508 (535)
Q Consensus 429 RP~i~~~p~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~~P~~~ 508 (535)
||+|+++|.+ +.||++|+|+++.+. ..++.+|+|+|++|+|||+|||||+|+|++.. .+ .+++++++|+|+
T Consensus 1 RP~i~~~p~~--i~yg~~~tv~~~~~~--~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~--~~---~~~~~v~~P~~~ 71 (98)
T PF09118_consen 1 RPVITSAPTT--IKYGQTFTVTVTVPS--AASIVKVSLVRPGFVTHSFNMGQRMVELEFVS--GG---GNTVTVTAPPNP 71 (98)
T ss_dssp ---EEES-SE--EETT-EEEEEE--SS-----ESEEEEEE--EEETTB-SS-EEEEE-EEE--ES---SSEEEEE--S-T
T ss_pred CCccccCCCe--EecCCEEEEEEECCC--ccceEEEEEEeCCcccccccCCCCEEeeeeec--CC---CCEEEEECCCCC
Confidence 9999999999 999999999998654 24789999999999999999999999999943 22 369999999999
Q ss_pred CcCCCcceEEEEEc-CCcCCccEEEEe
Q 009420 509 NLAPSGYYLLFVVH-QDVPSEGIWVHV 534 (535)
Q Consensus 509 ~~~ppG~ymlf~~~-~gvPS~a~~v~i 534 (535)
+|+|||||||||++ +||||+|+||+|
T Consensus 72 ~vaPPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 72 NVAPPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp TTS-SEEEEEEEEETTS-B---EEEEE
T ss_pred ccCCCcCEEEEEEcCCCcccccEEEEC
Confidence 99999999999999 999999999997
No 10
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.1e-30 Score=268.39 Aligned_cols=297 Identities=14% Similarity=0.151 Sum_probs=203.6
Q ss_pred cCCCceEEccc----CCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcccc--
Q 009420 24 AAGGGWQLLQK----SIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQS-- 97 (535)
Q Consensus 24 ~~~g~W~~l~~----~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~-- 97 (535)
+..++|..+.. +|..|..|++++.+++||++||....... ....+++||+.+++|+.++.+.
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~------------~~~~~~~yd~~~~~W~~~~~~~~~ 71 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEH------------IDKDLYVFDFNTHTWSIAPANGDV 71 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCc------------eeCcEEEEECCCCEEEEcCccCCC
Confidence 46788999876 56678889999899999999997421111 1246899999999999987432
Q ss_pred -cccc-ccceecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCCceecCCC-----CcccccceEEEecCCcEEEEcCcc
Q 009420 98 -NVWC-SSGAVRPDGVLIQTGGFNDG--EKKIRSFVPCNDESCDWKEIDGL-----GARRWYATDHILPDGRIIIIGGRR 168 (535)
Q Consensus 98 -~~~c-~~~~~l~dG~l~v~GG~~~g--~~~v~~ydp~~~~~~~W~~~~~m-----~~~R~y~s~~~L~dG~vyvvGG~~ 168 (535)
...| ...++..+++||++||.... .+++++|||. +++|+++++| +.+|..|+++++ +++|||+||.+
T Consensus 72 p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~---t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~ 147 (341)
T PLN02153 72 PRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTV---KNEWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVS 147 (341)
T ss_pred CCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECC---CCEEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCcc
Confidence 2223 23345569999999997532 4689999999 9999999887 778988888877 89999999986
Q ss_pred CCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCC-CCCCCC
Q 009420 169 QFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGG-DPRSYP 247 (535)
Q Consensus 169 ~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~-~~R~~~ 247 (535)
..... . ....+ +++++||+++++|. .++++... .+|..+
T Consensus 148 ~~~~~--------~--~~~~~-----------------------------~~v~~yd~~~~~W~-~l~~~~~~~~~r~~~ 187 (341)
T PLN02153 148 KGGLM--------K--TPERF-----------------------------RTIEAYNIADGKWV-QLPDPGENFEKRGGA 187 (341)
T ss_pred CCCcc--------C--CCccc-----------------------------ceEEEEECCCCeEe-eCCCCCCCCCCCCcc
Confidence 32100 0 00000 13689999999999 47654311 145432
Q ss_pred CCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee----cCCCCceeceeEE
Q 009420 248 SSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE----TMPQPRVMGDMTL 323 (535)
Q Consensus 248 ~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~----~m~~~R~~~~~v~ 323 (535)
++++ .++|||++||... .+...... ....+.+++||+.. ++|+.. .||.+|..+++++
T Consensus 188 --~~~~-----------~~~~iyv~GG~~~-~~~~gG~~--~~~~~~v~~yd~~~--~~W~~~~~~g~~P~~r~~~~~~~ 249 (341)
T PLN02153 188 --GFAV-----------VQGKIWVVYGFAT-SILPGGKS--DYESNAVQFFDPAS--GKWTEVETTGAKPSARSVFAHAV 249 (341)
T ss_pred --eEEE-----------ECCeEEEEecccc-ccccCCcc--ceecCceEEEEcCC--CcEEeccccCCCCCCcceeeeEE
Confidence 2333 3899999999642 10000000 01256899999985 899986 3789999888665
Q ss_pred ccCCeEEEEcCCCCCC-CCcccCCCCccccEEEeCCCCCCCceeecC-----CCCCCcccccceeecCCCcEEEecCCCC
Q 009420 324 LPNGNVLLINGAGKGT-AGWELGRDPVLAPVVYRPDNIPGSRFDLQN-----PSTIPRMYHSTAVLLRDGRVLVGGSNPH 397 (535)
Q Consensus 324 lpdG~I~vvGG~~~g~-~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~-----~~~~~R~yhs~a~LlpDG~V~v~GG~~~ 397 (535)
+ +++|||+||..... .+.........++++|||+++ +|+.+. +++..|.+|+++++.-+++||+.||...
T Consensus 250 ~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 250 V-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred E-CCEEEEECcccCCccccccccccccccEEEEEcCcc---EEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCC
Confidence 5 99999999964110 000000111236899999999 999885 5666677666776655679999999754
Q ss_pred c
Q 009420 398 A 398 (535)
Q Consensus 398 ~ 398 (535)
.
T Consensus 326 ~ 326 (341)
T PLN02153 326 T 326 (341)
T ss_pred C
Confidence 3
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=276.77 Aligned_cols=218 Identities=16% Similarity=0.264 Sum_probs=173.7
Q ss_pred EECCCCCEEECccccccccccceecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCc
Q 009420 83 YSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFND--GEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGR 160 (535)
Q Consensus 83 yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~--g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~ 160 (535)
|++.+++|.... ..| .++..++.||++||... ..+++++|||. +++|..+++|+.+|.+++++++ ||+
T Consensus 251 ~~~~~~~~~~~~----~~~--~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~---~~~W~~~~~m~~~r~~~~~v~~-~~~ 320 (480)
T PHA02790 251 YPMNMDQIIDIF----HMC--TSTHVGEVVYLIGGWMNNEIHNNAIAVNYI---SNNWIPIPPMNSPRLYASGVPA-NNK 320 (480)
T ss_pred cCCcccceeecc----CCc--ceEEECCEEEEEcCCCCCCcCCeEEEEECC---CCEEEECCCCCchhhcceEEEE-CCE
Confidence 456666777642 122 23335899999999753 24789999999 8999999999999999998888 899
Q ss_pred EEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCC
Q 009420 161 IIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPG 240 (535)
Q Consensus 161 vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~ 240 (535)
||++||.+.. . ++++|||.+|+|. .+|+||.
T Consensus 321 iYviGG~~~~--------------------~----------------------------sve~ydp~~n~W~-~~~~l~~ 351 (480)
T PHA02790 321 LYVVGGLPNP--------------------T----------------------------SVERWFHGDAAWV-NMPSLLK 351 (480)
T ss_pred EEEECCcCCC--------------------C----------------------------ceEEEECCCCeEE-ECCCCCC
Confidence 9999997421 0 2689999999998 5898885
Q ss_pred CCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCCceec
Q 009420 241 GDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVMG 319 (535)
Q Consensus 241 ~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~ 319 (535)
+|..+ ++++ .+++||++||.+. ..+++|+|||.. ++|+.. +|+.+|..+
T Consensus 352 --~r~~~--~~~~-----------~~g~IYviGG~~~-------------~~~~ve~ydp~~--~~W~~~~~m~~~r~~~ 401 (480)
T PHA02790 352 --PRCNP--AVAS-----------INNVIYVIGGHSE-------------TDTTTEYLLPNH--DQWQFGPSTYYPHYKS 401 (480)
T ss_pred --CCccc--EEEE-----------ECCEEEEecCcCC-------------CCccEEEEeCCC--CEEEeCCCCCCccccc
Confidence 57643 3344 3899999999752 135789999985 899998 999999999
Q ss_pred eeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecCCCCcc
Q 009420 320 DMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGSNPHAY 399 (535)
Q Consensus 320 ~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG~~~~~ 399 (535)
+++++ +|+|||+||. +|+|||+++ +|+.+++|+.+|..|+++++ +|+|||+||.....
T Consensus 402 ~~~~~-~~~IYv~GG~----------------~e~ydp~~~---~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~ 459 (480)
T PHA02790 402 CALVF-GRRLFLVGRN----------------AEFYCESSN---TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGS 459 (480)
T ss_pred eEEEE-CCEEEEECCc----------------eEEecCCCC---cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCc
Confidence 87655 9999999973 389999999 99999999999999988776 99999999965321
Q ss_pred ccccCCCCCceeeEEEEcCCC
Q 009420 400 YNFTGVLFPTELSLEAFSPYY 420 (535)
Q Consensus 400 ~~~~~~~~~~~~~vE~y~Ppy 420 (535)
....+|+|+|..
T Consensus 460 ---------~~~~ve~Yd~~~ 471 (480)
T PHA02790 460 ---------YIDTIEVYNNRT 471 (480)
T ss_pred ---------ccceEEEEECCC
Confidence 124799999975
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=272.78 Aligned_cols=210 Identities=14% Similarity=0.209 Sum_probs=166.6
Q ss_pred EeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCe
Q 009420 45 LLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKK 124 (535)
Q Consensus 45 ~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~ 124 (535)
+..+++||++||.+. .. ....+++|||.+++|.+++.+...++..+++..||+||++||.. +.++
T Consensus 268 ~~~~~~lyviGG~~~-~~-------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~-~~~s 332 (480)
T PHA02790 268 THVGEVVYLIGGWMN-NE-------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP-NPTS 332 (480)
T ss_pred EEECCEEEEEcCCCC-CC-------------cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC-CCCc
Confidence 347899999999641 11 23568999999999999997765655555556699999999974 3478
Q ss_pred EEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcce
Q 009420 125 IRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPF 204 (535)
Q Consensus 125 v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~ 204 (535)
+++|||. +++|+.+++|+.+|..++++++ +|+|||+||.+... .
T Consensus 333 ve~ydp~---~n~W~~~~~l~~~r~~~~~~~~-~g~IYviGG~~~~~-------------------~------------- 376 (480)
T PHA02790 333 VERWFHG---DAAWVNMPSLLKPRCNPAVASI-NNVIYVIGGHSETD-------------------T------------- 376 (480)
T ss_pred eEEEECC---CCeEEECCCCCCCCcccEEEEE-CCEEEEecCcCCCC-------------------c-------------
Confidence 9999999 8999999999999999888888 89999999974210 0
Q ss_pred EEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccc
Q 009420 205 VFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAE 284 (535)
Q Consensus 205 ~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~ 284 (535)
.+++|||++++|. ..|+|+. +|..+ +++++ +++||++||.
T Consensus 377 ---------------~ve~ydp~~~~W~-~~~~m~~--~r~~~--~~~~~-----------~~~IYv~GG~--------- 416 (480)
T PHA02790 377 ---------------TTEYLLPNHDQWQ-FGPSTYY--PHYKS--CALVF-----------GRRLFLVGRN--------- 416 (480)
T ss_pred ---------------cEEEEeCCCCEEE-eCCCCCC--ccccc--eEEEE-----------CCEEEEECCc---------
Confidence 2789999999999 5887775 56643 33443 8999999983
Q ss_pred cccccccCCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCC
Q 009420 285 KGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGS 363 (535)
Q Consensus 285 ~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~ 363 (535)
+|+|||.. ++|+.. +|+.+|..++++++ +|+|||+||.+.+ ..+.++|+|||+++
T Consensus 417 ----------~e~ydp~~--~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~--------~~~~~ve~Yd~~~~--- 472 (480)
T PHA02790 417 ----------AEFYCESS--NTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRG--------SYIDTIEVYNNRTY--- 472 (480)
T ss_pred ----------eEEecCCC--CcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCC--------cccceEEEEECCCC---
Confidence 35788764 899998 99999999987665 9999999997621 11347999999999
Q ss_pred ceeecC
Q 009420 364 RFDLQN 369 (535)
Q Consensus 364 ~Wt~~~ 369 (535)
+|+.+.
T Consensus 473 ~W~~~~ 478 (480)
T PHA02790 473 SWNIWD 478 (480)
T ss_pred eEEecC
Confidence 998763
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=1.2e-28 Score=253.33 Aligned_cols=271 Identities=15% Similarity=0.120 Sum_probs=186.1
Q ss_pred eeEEEEeeCCeEEEEecCCCCCCCCCCC-CCccccCCCCceeEEEE-CCCC-CEEECccccccccccceecCCCcEEEEc
Q 009420 40 SMHMQLLNNDRVVMFDRSDFGPSNLSLP-PGKCLKTDCTAHSVEYS-VLTN-EFRPLFVQSNVWCSSGAVRPDGVLIQTG 116 (535)
Q Consensus 40 ~~~~~~~~~gkv~v~gg~~~~~~~~~~~-~G~~~~~d~~~~~~~yD-p~t~-~w~~~~~~~~~~c~~~~~l~dG~l~v~G 116 (535)
+.|.+.+.+++||++||.+.. . ..+. .| ++.+...+.+|+ +..+ +|++++.++..++.++++..+++||++|
T Consensus 5 ~g~~~~~~~~~l~v~GG~~~~-~-~~~~~~g---~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviG 79 (323)
T TIGR03548 5 AGCYAGIIGDYILVAGGCNFP-E-DPLAEGG---KKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIG 79 (323)
T ss_pred eeEeeeEECCEEEEeeccCCC-C-CchhhCC---cEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEc
Confidence 446666689999999998632 1 1111 12 112334455554 4433 7999986665554444555699999999
Q ss_pred CCCCC--CCeEEEEcCCCCCCCCc----eecCCCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCCeeeecccc
Q 009420 117 GFNDG--EKKIRSFVPCNDESCDW----KEIDGLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLV 190 (535)
Q Consensus 117 G~~~g--~~~v~~ydp~~~~~~~W----~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~ 190 (535)
|.... .+++++||+. +++| +.+++|+.+|..++++++ +++|||+||..... .+
T Consensus 80 G~~~~~~~~~v~~~d~~---~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~----------------~~- 138 (323)
T TIGR03548 80 GSNSSERFSSVYRITLD---ESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGK----------------PS- 138 (323)
T ss_pred CCCCCCCceeEEEEEEc---CCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCc----------------cC-
Confidence 98532 4789999998 7776 788999999988888887 89999999964211 00
Q ss_pred ccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEE
Q 009420 191 QTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVL 270 (535)
Q Consensus 191 ~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIy 270 (535)
+++++||+++++|+ .+++||.. +|..+ +++. .+++||
T Consensus 139 ----------------------------~~v~~yd~~~~~W~-~~~~~p~~-~r~~~---~~~~----------~~~~iY 175 (323)
T TIGR03548 139 ----------------------------NKSYLFNLETQEWF-ELPDFPGE-PRVQP---VCVK----------LQNELY 175 (323)
T ss_pred ----------------------------ceEEEEcCCCCCee-ECCCCCCC-CCCcc---eEEE----------ECCEEE
Confidence 13789999999999 58877753 46532 2222 389999
Q ss_pred EEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCC---CCce--eceeEEccCCeEEEEcCCCCCCC----
Q 009420 271 VCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMP---QPRV--MGDMTLLPNGNVLLINGAGKGTA---- 340 (535)
Q Consensus 271 v~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~---~~R~--~~~~v~lpdG~I~vvGG~~~g~~---- 340 (535)
|+||.+.. ...++++||+.+ ++|+.. +|+ .||. .+.++++.+++|||+||.+....
T Consensus 176 v~GG~~~~------------~~~~~~~yd~~~--~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 176 VFGGGSNI------------AYTDGYKYSPKK--NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred EEcCCCCc------------cccceEEEecCC--CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 99997521 124578999985 899987 763 3443 34445566899999999762100
Q ss_pred -Ccc-------------------cCCCCccccEEEeCCCCCCCceeecCCCC-CCcccccceeecCCCcEEEecCCCCc
Q 009420 341 -GWE-------------------LGRDPVLAPVVYRPDNIPGSRFDLQNPST-IPRMYHSTAVLLRDGRVLVGGSNPHA 398 (535)
Q Consensus 341 -g~~-------------------~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~-~~R~yhs~a~LlpDG~V~v~GG~~~~ 398 (535)
.+. ....-..++|+|||.++ +|+.+++++ .+|..|+.+++ |++||++||....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~~p 315 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLT--GNNIFSINGELKP 315 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEE--CCEEEEEeccccC
Confidence 000 00001236899999999 999999887 68988876655 9999999997544
No 14
>PLN02193 nitrile-specifier protein
Probab=99.96 E-value=1.1e-27 Score=257.99 Aligned_cols=280 Identities=13% Similarity=0.141 Sum_probs=197.3
Q ss_pred CCceEEccc---CCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc---cc-
Q 009420 26 GGGWQLLQK---SIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ---SN- 98 (535)
Q Consensus 26 ~g~W~~l~~---~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~---~~- 98 (535)
.++|..+.+ ++..|..|+++..+++||++||....... ....+++||+++++|+.++.+ +.
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~------------~~~~v~~yD~~~~~W~~~~~~g~~P~~ 217 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQP------------IDKHLYVFDLETRTWSISPATGDVPHL 217 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCC------------eeCcEEEEECCCCEEEeCCCCCCCCCC
Confidence 489998875 46688999999999999999996411110 124689999999999987642 22
Q ss_pred cccccceecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCCceecCCC---CcccccceEEEecCCcEEEEcCccCCeeE
Q 009420 99 VWCSSGAVRPDGVLIQTGGFND--GEKKIRSFVPCNDESCDWKEIDGL---GARRWYATDHILPDGRIIIIGGRRQFNYE 173 (535)
Q Consensus 99 ~~c~~~~~l~dG~l~v~GG~~~--g~~~v~~ydp~~~~~~~W~~~~~m---~~~R~y~s~~~L~dG~vyvvGG~~~~~~E 173 (535)
.++..+++..+++|||+||... ..+++++|||. +++|+++++| +.+|.+|++++. +++|||+||.+...
T Consensus 218 ~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~---t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~-- 291 (470)
T PLN02193 218 SCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT---TNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATA-- 291 (470)
T ss_pred cccceEEEEECCEEEEECCCCCCCCCccEEEEECC---CCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCC--
Confidence 2233344556999999999853 25789999999 9999999988 789999888776 89999999975321
Q ss_pred EEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCC-CCCCCCCCCCCce
Q 009420 174 FYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIP-GGDPRSYPSSGSA 252 (535)
Q Consensus 174 ~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p-~~~~R~~~~~g~~ 252 (535)
.+ +.+++||+.+++|.. +++.. +..+|..+ +++
T Consensus 292 --------------~~-----------------------------~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~--~~~ 325 (470)
T PLN02193 292 --------------RL-----------------------------KTLDSYNIVDKKWFH-CSTPGDSFSIRGGA--GLE 325 (470)
T ss_pred --------------Cc-----------------------------ceEEEEECCCCEEEe-CCCCCCCCCCCCCc--EEE
Confidence 00 026789999999984 55311 11135432 223
Q ss_pred EeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cC---CCCceeceeEEccCCe
Q 009420 253 VLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TM---PQPRVMGDMTLLPNGN 328 (535)
Q Consensus 253 v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m---~~~R~~~~~v~lpdG~ 328 (535)
+ .+++||++||.+. . ..+++++||+.+ ++|+.. +| |.+|..++++++ +++
T Consensus 326 ~-----------~~gkiyviGG~~g-~-----------~~~dv~~yD~~t--~~W~~~~~~g~~P~~R~~~~~~~~-~~~ 379 (470)
T PLN02193 326 V-----------VQGKVWVVYGFNG-C-----------EVDDVHYYDPVQ--DKWTQVETFGVRPSERSVFASAAV-GKH 379 (470)
T ss_pred E-----------ECCcEEEEECCCC-C-----------ccCceEEEECCC--CEEEEeccCCCCCCCcceeEEEEE-CCE
Confidence 2 3899999999752 1 257899999985 899986 44 889999887665 999
Q ss_pred EEEEcCCCCCC-CCcccCCCCccccEEEeCCCCCCCceeecCCC------CCCcccccceeecCC--CcEEEecCCCCc
Q 009420 329 VLLINGAGKGT-AGWELGRDPVLAPVVYRPDNIPGSRFDLQNPS------TIPRMYHSTAVLLRD--GRVLVGGSNPHA 398 (535)
Q Consensus 329 I~vvGG~~~g~-~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~------~~~R~yhs~a~LlpD--G~V~v~GG~~~~ 398 (535)
|||+||..... .+.........++++|||.++ +|+.+..+ +.+|..|+.+....+ .++++.||....
T Consensus 380 iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~---~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 380 IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL---QWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred EEEECCccCCccccccCccceeccEEEEEcCcC---EEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence 99999975210 000000111236899999999 99988643 578888865432223 349999997543
No 15
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=7.2e-28 Score=264.15 Aligned_cols=245 Identities=19% Similarity=0.260 Sum_probs=189.7
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCCceecCCCCcccccceEEE
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDG---EKKIRSFVPCNDESCDWKEIDGLGARRWYATDHI 155 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g---~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~ 155 (535)
....|++.+++|.+++..+...|.++ ++.+++||++||.... .+++..||+. +++|+.+++|+.+|.++++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~---~~~W~~~~~~~~~R~~~~~~~ 340 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCFGS-VVLNNVIYFIGGMNKNNLSVNSVVSYDTK---TKSWNKVPELIYPRKNPGVTV 340 (534)
T ss_pred eeeecchhhhhcccccCccccccceE-EEECCEEEEECCCcCCCCeeccEEEEeCC---CCeeeECCCCCcccccceEEE
Confidence 45689999999999876555556444 4559999999998532 3579999999 999999999999999998888
Q ss_pred ecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEec
Q 009420 156 LPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQY 235 (535)
Q Consensus 156 L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~ 235 (535)
+ +|+||++||.+... .+ +++++||+.+++|. ..
T Consensus 341 ~-~~~lyv~GG~~~~~----------------~~-----------------------------~~v~~yd~~~~~W~-~~ 373 (534)
T PHA03098 341 F-NNRIYVIGGIYNSI----------------SL-----------------------------NTVESWKPGESKWR-EE 373 (534)
T ss_pred E-CCEEEEEeCCCCCE----------------ec-----------------------------ceEEEEcCCCCcee-eC
Confidence 8 89999999976321 00 02789999999999 58
Q ss_pred CCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCC
Q 009420 236 PAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQ 314 (535)
Q Consensus 236 p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~ 314 (535)
+++|. +|..+ ++++ .+++||++||..... ..++++++||+.+ ++|+.. +||.
T Consensus 374 ~~lp~--~r~~~--~~~~-----------~~~~iYv~GG~~~~~----------~~~~~v~~yd~~t--~~W~~~~~~p~ 426 (534)
T PHA03098 374 PPLIF--PRYNP--CVVN-----------VNNLIYVIGGISKND----------ELLKTVECFSLNT--NKWSKGSPLPI 426 (534)
T ss_pred CCcCc--CCccc--eEEE-----------ECCEEEEECCcCCCC----------cccceEEEEeCCC--CeeeecCCCCc
Confidence 88886 57543 2232 389999999965221 1267899999985 899998 9999
Q ss_pred CceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecC
Q 009420 315 PRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGS 394 (535)
Q Consensus 315 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG 394 (535)
+|..++++++ +++|||+||..... .......+++|||.++ +|+.+++++.+|..|+.+++ |++|||.||
T Consensus 427 ~r~~~~~~~~-~~~iyv~GG~~~~~-----~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG 495 (534)
T PHA03098 427 SHYGGCAIYH-DGKIYVIGGISYID-----NIKVYNIVESYNPVTN---KWTELSSLNFPRINASLCIF--NNKIYVVGG 495 (534)
T ss_pred cccCceEEEE-CCEEEEECCccCCC-----CCcccceEEEecCCCC---ceeeCCCCCcccccceEEEE--CCEEEEEcC
Confidence 9999887655 99999999975211 0111335899999999 99999999999999877665 999999999
Q ss_pred CCCccccccCCCCCceeeEEEEcCCCC
Q 009420 395 NPHAYYNFTGVLFPTELSLEAFSPYYL 421 (535)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~vE~y~Ppyl 421 (535)
..... ....+|+|+|..-
T Consensus 496 ~~~~~---------~~~~v~~yd~~~~ 513 (534)
T PHA03098 496 DKYEY---------YINEIEVYDDKTN 513 (534)
T ss_pred CcCCc---------ccceeEEEeCCCC
Confidence 75432 1347999999864
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=260.74 Aligned_cols=251 Identities=14% Similarity=0.159 Sum_probs=186.3
Q ss_pred CCCceEEcccCCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccc
Q 009420 25 AGGGWQLLQKSIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSG 104 (535)
Q Consensus 25 ~~g~W~~l~~~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~ 104 (535)
...+|..+.+.+ .+..|++++.+++||++||.+.. .. ....+.+||+.+++|+.++.+...++..+
T Consensus 272 ~~~~~~~~~~~~-~~~~~~~~~~~~~lyv~GG~~~~-~~------------~~~~v~~yd~~~~~W~~~~~~~~~R~~~~ 337 (534)
T PHA03098 272 PLSEINTIIDIH-YVYCFGSVVLNNVIYFIGGMNKN-NL------------SVNSVVSYDTKTKSWNKVPELIYPRKNPG 337 (534)
T ss_pred hhhhcccccCcc-ccccceEEEECCEEEEECCCcCC-CC------------eeccEEEEeCCCCeeeECCCCCcccccce
Confidence 345677775543 34446777789999999997521 10 12468899999999999987664444445
Q ss_pred eecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCC
Q 009420 105 AVRPDGVLIQTGGFNDG--EKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPN 182 (535)
Q Consensus 105 ~~l~dG~l~v~GG~~~g--~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~ 182 (535)
++..+|+||++||.... .+++++|||. +++|+.+++|+.+|..++++++ +|+|||+||..... .
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~----------~ 403 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPG---ESKWREEPPLIFPRYNPCVVNV-NNLIYVIGGISKND----------E 403 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCC---CCceeeCCCcCcCCccceEEEE-CCEEEEECCcCCCC----------c
Confidence 55669999999998632 5789999999 9999999999999988888877 89999999974321 0
Q ss_pred eeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCC
Q 009420 183 VYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLA 262 (535)
Q Consensus 183 w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~ 262 (535)
.+ +.+++|||.+++|. .++++|. +|..+ +++.
T Consensus 404 -----~~-----------------------------~~v~~yd~~t~~W~-~~~~~p~--~r~~~---~~~~-------- 435 (534)
T PHA03098 404 -----LL-----------------------------KTVECFSLNTNKWS-KGSPLPI--SHYGG---CAIY-------- 435 (534)
T ss_pred -----cc-----------------------------ceEEEEeCCCCeee-ecCCCCc--cccCc---eEEE--------
Confidence 00 13789999999999 5887775 46532 2332
Q ss_pred CCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCCCCCC
Q 009420 263 PSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKGTAG 341 (535)
Q Consensus 263 ~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g 341 (535)
.+++||++||...... ....+.+++||+.. ++|+.. +|+.+|..++++++ +|+|||+||....
T Consensus 436 --~~~~iyv~GG~~~~~~--------~~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~--- 499 (534)
T PHA03098 436 --HDGKIYVIGGISYIDN--------IKVYNIVESYNPVT--NKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYE--- 499 (534)
T ss_pred --ECCEEEEECCccCCCC--------CcccceEEEecCCC--CceeeCCCCCcccccceEEEE-CCEEEEEcCCcCC---
Confidence 3899999999752110 01245699999985 899998 89999999887665 9999999997621
Q ss_pred cccCCCCccccEEEeCCCCCCCceeecCCCCCCc
Q 009420 342 WELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPR 375 (535)
Q Consensus 342 ~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R 375 (535)
....++|+|||+++ +|+.++.+|...
T Consensus 500 -----~~~~~v~~yd~~~~---~W~~~~~~p~~~ 525 (534)
T PHA03098 500 -----YYINEIEVYDDKTN---TWTLFCKFPKVI 525 (534)
T ss_pred -----cccceeEEEeCCCC---EEEecCCCcccc
Confidence 11347899999999 999988765433
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.95 E-value=2.8e-26 Score=238.05 Aligned_cols=241 Identities=20% Similarity=0.281 Sum_probs=164.5
Q ss_pred cCCCceEEcccCC-CcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcc-c-cccc
Q 009420 24 AAGGGWQLLQKSI-GISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFV-Q-SNVW 100 (535)
Q Consensus 24 ~~~g~W~~l~~~~-~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~-~-~~~~ 100 (535)
+..++|..+++|+ ..|..|+++..+++||++||....... +. ......+++|||.+++|++++. + ..++
T Consensus 38 ~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~-----~~---~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~ 109 (346)
T TIGR03547 38 KPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE-----GS---PQVFDDVYRYDPKKNSWQKLDTRSPVGLL 109 (346)
T ss_pred CCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC-----Cc---ceecccEEEEECCCCEEecCCCCCCCccc
Confidence 4568899999987 478888888899999999997421100 00 0023578999999999999973 2 2334
Q ss_pred cccceecCCCcEEEEcCCCCC------------------------------------CCeEEEEcCCCCCCCCceecCCC
Q 009420 101 CSSGAVRPDGVLIQTGGFNDG------------------------------------EKKIRSFVPCNDESCDWKEIDGL 144 (535)
Q Consensus 101 c~~~~~l~dG~l~v~GG~~~g------------------------------------~~~v~~ydp~~~~~~~W~~~~~m 144 (535)
+++++++.+|+||++||.... .+++++|||. +++|+.+++|
T Consensus 110 ~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~---t~~W~~~~~~ 186 (346)
T TIGR03547 110 GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPS---TNQWRNLGEN 186 (346)
T ss_pred ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECC---CCceeECccC
Confidence 444443569999999997421 2689999999 9999999999
Q ss_pred Cc-ccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEE
Q 009420 145 GA-RRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAIL 223 (535)
Q Consensus 145 ~~-~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~ 223 (535)
+. +|..++++++ +|+|||+||..... + .+. .+++
T Consensus 187 p~~~r~~~~~~~~-~~~iyv~GG~~~~~-----------------~-~~~--------------------------~~~~ 221 (346)
T TIGR03547 187 PFLGTAGSAIVHK-GNKLLLINGEIKPG-----------------L-RTA--------------------------EVKQ 221 (346)
T ss_pred CCCcCCCceEEEE-CCEEEEEeeeeCCC-----------------c-cch--------------------------heEE
Confidence 86 5777777776 89999999974321 0 000 1233
Q ss_pred --EECCCCeEEEecCCCCCCCCCCC-CC--CCc-eEeecccccCCCCCCcEEEEEcCCCCCccccc--cccccc----cc
Q 009420 224 --FDYVNNKVVKQYPAIPGGDPRSY-PS--SGS-AVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQA--EKGVFV----AA 291 (535)
Q Consensus 224 --yDp~t~~W~~~~p~~p~~~~R~~-~~--~g~-~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~--~~~~~~----pa 291 (535)
||+++++|. .+++||. +|.. +. .+. ++. .+++||++||.+....... ....+. ..
T Consensus 222 y~~~~~~~~W~-~~~~m~~--~r~~~~~~~~~~~a~~----------~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 288 (346)
T TIGR03547 222 YLFTGGKLEWN-KLPPLPP--PKSSSQEGLAGAFAGI----------SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIK 288 (346)
T ss_pred EEecCCCceee-ecCCCCC--CCCCccccccEEeeeE----------ECCEEEEeecCCCCCchhhhhcCCccccCCCCc
Confidence 456788998 5888875 3421 11 111 222 3899999999752100000 000010 11
Q ss_pred CCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCC
Q 009420 292 LNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAG 336 (535)
Q Consensus 292 ~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~ 336 (535)
..++|+||+.. ++|+.. +||.+|..+.+++ .+|+|||+||..
T Consensus 289 ~~~~e~yd~~~--~~W~~~~~lp~~~~~~~~~~-~~~~iyv~GG~~ 331 (346)
T TIGR03547 289 AWSSEVYALDN--GKWSKVGKLPQGLAYGVSVS-WNNGVLLIGGEN 331 (346)
T ss_pred eeEeeEEEecC--CcccccCCCCCCceeeEEEE-cCCEEEEEeccC
Confidence 34789999984 899998 9999998887554 599999999976
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.94 E-value=1.5e-25 Score=230.46 Aligned_cols=230 Identities=14% Similarity=0.137 Sum_probs=163.9
Q ss_pred ceEEcccCCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCE----EECcccccccccc
Q 009420 28 GWQLLQKSIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEF----RPLFVQSNVWCSS 103 (535)
Q Consensus 28 ~W~~l~~~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w----~~~~~~~~~~c~~ 103 (535)
+|..+.+++..|+.|+++..+++||++||.+ +.. ....+++||+.+++| +.++.++..++..
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~-~~~-------------~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~ 117 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSN-SSE-------------RFSSVYRITLDESKEELICETIGNLPFTFENG 117 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCC-CCC-------------CceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence 7999998888887777777899999999965 111 235789999999998 6677665555545
Q ss_pred ceecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCCceecCCCC-cccccceEEEecCCcEEEEcCccCCeeEEEeCCCC
Q 009420 104 GAVRPDGVLIQTGGFND--GEKKIRSFVPCNDESCDWKEIDGLG-ARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGA 180 (535)
Q Consensus 104 ~~~l~dG~l~v~GG~~~--g~~~v~~ydp~~~~~~~W~~~~~m~-~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~ 180 (535)
++++.+++|||+||..+ ..+++++|||. +++|+++++|+ .+|..++++++ +++|||+||.+...
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~--------- 184 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLE---TQEWFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIA--------- 184 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCC---CCCeeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCcc---------
Confidence 55666999999999743 25789999999 99999999997 47877777677 89999999975311
Q ss_pred CCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCC-CCCCCCCCCceEeecccc
Q 009420 181 PNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGG-DPRSYPSSGSAVLLPLKN 259 (535)
Q Consensus 181 ~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~-~~R~~~~~g~~v~lpl~~ 259 (535)
.. ++++|||++++|+ .+++|+.. .+|.... .+++.+
T Consensus 185 -----------~~--------------------------~~~~yd~~~~~W~-~~~~~~~~~~p~~~~~-~~~~~~---- 221 (323)
T TIGR03548 185 -----------YT--------------------------DGYKYSPKKNQWQ-KVADPTTDSEPISLLG-AASIKI---- 221 (323)
T ss_pred -----------cc--------------------------ceEEEecCCCeeE-ECCCCCCCCCceeccc-eeEEEE----
Confidence 00 2578999999998 47765421 1333211 122211
Q ss_pred cCCCCCCcEEEEEcCCCCCcccccccccc---------------------cc-cCCceEEEEecCCCCCeeee-cCC-CC
Q 009420 260 LLAPSVAAEVLVCGGAPKGAYEQAEKGVF---------------------VA-ALNTCARIKITDPTPTWVLE-TMP-QP 315 (535)
Q Consensus 260 ~~~~~~~gkIyv~GG~~~~~~~~~~~~~~---------------------~p-a~~s~e~~d~~~~~~~W~~~-~m~-~~ 315 (535)
.+++||++||.+...+.+ ..+.+ .+ -.+++++||+.. ++|+.. +|+ .+
T Consensus 222 -----~~~~iyv~GG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~ 293 (323)
T TIGR03548 222 -----NESLLLCIGGFNKDVYND-AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT--GKWKSIGNSPFFA 293 (323)
T ss_pred -----CCCEEEEECCcCHHHHHH-HHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC--CeeeEcccccccc
Confidence 378999999986311100 00000 00 136799999985 899998 787 58
Q ss_pred ceeceeEEccCCeEEEEcCCC
Q 009420 316 RVMGDMTLLPNGNVLLINGAG 336 (535)
Q Consensus 316 R~~~~~v~lpdG~I~vvGG~~ 336 (535)
|..++++++ +++||++||..
T Consensus 294 r~~~~~~~~-~~~iyv~GG~~ 313 (323)
T TIGR03548 294 RCGAALLLT-GNNIFSINGEL 313 (323)
T ss_pred cCchheEEE-CCEEEEEeccc
Confidence 988876655 99999999965
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=1.9e-25 Score=234.28 Aligned_cols=262 Identities=19% Similarity=0.239 Sum_probs=174.4
Q ss_pred CCceEEcccCC-CcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc-c-ccccc
Q 009420 26 GGGWQLLQKSI-GISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ-S-NVWCS 102 (535)
Q Consensus 26 ~g~W~~l~~~~-~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~-~-~~~c~ 102 (535)
.++|..+++++ ..|..|+++..+++||++||...... ++ .......+++||+.+++|+.++.+ . .++.+
T Consensus 61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~-----~~---~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~ 132 (376)
T PRK14131 61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNS-----EG---SPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGH 132 (376)
T ss_pred CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCC-----CC---ceeEcccEEEEeCCCCEEEeCCCCCCCcccce
Confidence 46899998876 36778888888999999999642110 00 000235789999999999999842 2 23333
Q ss_pred cceecCCCcEEEEcCCCC------------------------------------CCCeEEEEcCCCCCCCCceecCCCCc
Q 009420 103 SGAVRPDGVLIQTGGFND------------------------------------GEKKIRSFVPCNDESCDWKEIDGLGA 146 (535)
Q Consensus 103 ~~~~l~dG~l~v~GG~~~------------------------------------g~~~v~~ydp~~~~~~~W~~~~~m~~ 146 (535)
+.+++.|++||++||... ..+.+++|||. +++|+.+++|+.
T Consensus 133 ~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~---t~~W~~~~~~p~ 209 (376)
T PRK14131 133 VAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPS---TNQWKNAGESPF 209 (376)
T ss_pred EEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECC---CCeeeECCcCCC
Confidence 333436999999999742 13679999999 999999999997
Q ss_pred -ccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEE
Q 009420 147 -RRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFD 225 (535)
Q Consensus 147 -~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yD 225 (535)
+|..++++.+ +++|||+||...... ++.+ + ....||
T Consensus 210 ~~~~~~a~v~~-~~~iYv~GG~~~~~~------------------~~~~------------------~------~~~~~~ 246 (376)
T PRK14131 210 LGTAGSAVVIK-GNKLWLINGEIKPGL------------------RTDA------------------V------KQGKFT 246 (376)
T ss_pred CCCCcceEEEE-CCEEEEEeeeECCCc------------------CChh------------------h------eEEEec
Confidence 5655555555 899999999643210 0000 0 023578
Q ss_pred CCCCeEEEecCCCCCCCCCCCC--C--CCc-eEeecccccCCCCCCcEEEEEcCCCCCccc-cccc-ccc----cccCCc
Q 009420 226 YVNNKVVKQYPAIPGGDPRSYP--S--SGS-AVLLPLKNLLAPSVAAEVLVCGGAPKGAYE-QAEK-GVF----VAALNT 294 (535)
Q Consensus 226 p~t~~W~~~~p~~p~~~~R~~~--~--~g~-~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~-~~~~-~~~----~pa~~s 294 (535)
+++++|. .+++||. +|..+ . .+. +++ .+++||++||.+..... .... ..+ .....+
T Consensus 247 ~~~~~W~-~~~~~p~--~~~~~~~~~~~~~~a~~----------~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (376)
T PRK14131 247 GNNLKWQ-KLPDLPP--APGGSSQEGVAGAFAGY----------SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS 313 (376)
T ss_pred CCCccee-ecCCCCC--CCcCCcCCccceEecee----------ECCEEEEeeccCCCCChhhhhcCCcccccCCcceee
Confidence 9999998 5887875 34211 0 111 222 38999999997521000 0000 000 011236
Q ss_pred eEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceee
Q 009420 295 CARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDL 367 (535)
Q Consensus 295 ~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~ 367 (535)
+|+||+.. ++|+.. +||.+|.++.++++ +|+|||+||...+ ...+.++++|+++.+ +++.
T Consensus 314 ~e~yd~~~--~~W~~~~~lp~~r~~~~av~~-~~~iyv~GG~~~~-------~~~~~~v~~~~~~~~---~~~~ 374 (376)
T PRK14131 314 DEIYALVN--GKWQKVGELPQGLAYGVSVSW-NNGVLLIGGETAG-------GKAVSDVTLLSWDGK---KLTV 374 (376)
T ss_pred hheEEecC--CcccccCcCCCCccceEEEEe-CCEEEEEcCCCCC-------CcEeeeEEEEEEcCC---EEEE
Confidence 89999985 899988 99999999876554 9999999997521 123457899999987 7653
No 20
>PLN02193 nitrile-specifier protein
Probab=99.94 E-value=1.3e-24 Score=234.02 Aligned_cols=276 Identities=17% Similarity=0.160 Sum_probs=188.6
Q ss_pred EEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCC----CCEEECcc---ccccccccceecCCCcEEE
Q 009420 42 HMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLT----NEFRPLFV---QSNVWCSSGAVRPDGVLIQ 114 (535)
Q Consensus 42 ~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t----~~w~~~~~---~~~~~c~~~~~l~dG~l~v 114 (535)
..+++.++||+.+.|.. +. .+ +.--+.++||.+ ++|..++. .+..++..+++..+++||+
T Consensus 114 ~~f~~~~~~ivgf~G~~-~~-~~-----------~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv 180 (470)
T PLN02193 114 VKFVLQGGKIVGFHGRS-TD-VL-----------HSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYS 180 (470)
T ss_pred CEEEEcCCeEEEEeccC-CC-cE-----------EeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEE
Confidence 34445688988888753 11 11 001234448766 89998874 2344555555666999999
Q ss_pred EcCCCCC----CCeEEEEcCCCCCCCCceecCCC---Ccc-cccceEEEecCCcEEEEcCccCCeeEEEeCCCCCCeeee
Q 009420 115 TGGFNDG----EKKIRSFVPCNDESCDWKEIDGL---GAR-RWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSL 186 (535)
Q Consensus 115 ~GG~~~g----~~~v~~ydp~~~~~~~W~~~~~m---~~~-R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~ 186 (535)
+||.... .+.+++||+. +++|+.++.+ +.. |..++++++ +++|||+||.+...
T Consensus 181 ~GG~~~~~~~~~~~v~~yD~~---~~~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~~~--------------- 241 (470)
T PLN02193 181 FGGEFTPNQPIDKHLYVFDLE---TRTWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDASR--------------- 241 (470)
T ss_pred ECCcCCCCCCeeCcEEEEECC---CCEEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCCCC---------------
Confidence 9997421 2569999999 8999988754 332 445666666 89999999975321
Q ss_pred ccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCC-CCCCCCCCCCceEeecccccCCCCC
Q 009420 187 PFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPG-GDPRSYPSSGSAVLLPLKNLLAPSV 265 (535)
Q Consensus 187 ~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~-~~~R~~~~~g~~v~lpl~~~~~~~~ 265 (535)
.+ . ++++||+.+++|.+ +++++. ..+|.++ +++. .
T Consensus 242 -~~---n--------------------------dv~~yD~~t~~W~~-l~~~~~~P~~R~~h---~~~~----------~ 277 (470)
T PLN02193 242 -QY---N--------------------------GFYSFDTTTNEWKL-LTPVEEGPTPRSFH---SMAA----------D 277 (470)
T ss_pred -CC---c--------------------------cEEEEECCCCEEEE-cCcCCCCCCCccce---EEEE----------E
Confidence 00 1 27899999999994 776621 1257653 2222 3
Q ss_pred CcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee----cCCCCceeceeEEccCCeEEEEcCCCCCCCC
Q 009420 266 AAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE----TMPQPRVMGDMTLLPNGNVLLINGAGKGTAG 341 (535)
Q Consensus 266 ~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~----~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g 341 (535)
+++||++||.+... .++++++||+.+ ++|+.. .++.+|..+.++++ +++|||+||.. +.
T Consensus 278 ~~~iYv~GG~~~~~-----------~~~~~~~yd~~t--~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~-g~-- 340 (470)
T PLN02193 278 EENVYVFGGVSATA-----------RLKTLDSYNIVD--KKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFN-GC-- 340 (470)
T ss_pred CCEEEEECCCCCCC-----------CcceEEEEECCC--CEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCC-CC--
Confidence 89999999986311 256789999985 899986 37788998886655 99999999975 31
Q ss_pred cccCCCCccccEEEeCCCCCCCceeecCCC---CCCcccccceeecCCCcEEEecCCCCcccc-ccCCCCCceeeEEEEc
Q 009420 342 WELGRDPVLAPVVYRPDNIPGSRFDLQNPS---TIPRMYHSTAVLLRDGRVLVGGSNPHAYYN-FTGVLFPTELSLEAFS 417 (535)
Q Consensus 342 ~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~---~~~R~yhs~a~LlpDG~V~v~GG~~~~~~~-~~~~~~~~~~~vE~y~ 417 (535)
....+++|||+++ +|+.++++ +.+|..|+++++ +++|||.||....... ..+... ...++++|+
T Consensus 341 ------~~~dv~~yD~~t~---~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~-~~ndv~~~D 408 (470)
T PLN02193 341 ------EVDDVHYYDPVQD---KWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQ-LTDGTFALD 408 (470)
T ss_pred ------ccCceEEEECCCC---EEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccc-eeccEEEEE
Confidence 1346899999999 99998764 889999987765 9999999997432100 000000 123689999
Q ss_pred CCCCC
Q 009420 418 PYYLD 422 (535)
Q Consensus 418 Ppyl~ 422 (535)
|....
T Consensus 409 ~~t~~ 413 (470)
T PLN02193 409 TETLQ 413 (470)
T ss_pred cCcCE
Confidence 98764
No 21
>PLN02153 epithiospecifier protein
Probab=99.94 E-value=9.5e-25 Score=226.15 Aligned_cols=259 Identities=17% Similarity=0.191 Sum_probs=172.1
Q ss_pred CCCCCEEECcc----ccccccccceecCCCcEEEEcCCCCC----CCeEEEEcCCCCCCCCceecCCCC-cccc---cce
Q 009420 85 VLTNEFRPLFV----QSNVWCSSGAVRPDGVLIQTGGFNDG----EKKIRSFVPCNDESCDWKEIDGLG-ARRW---YAT 152 (535)
Q Consensus 85 p~t~~w~~~~~----~~~~~c~~~~~l~dG~l~v~GG~~~g----~~~v~~ydp~~~~~~~W~~~~~m~-~~R~---y~s 152 (535)
+..++|+.+.. .+..++..+++..+++|||+||.... .+.+++||+. +++|+++++|. .+|. .++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~---~~~W~~~~~~~~~p~~~~~~~~ 80 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFN---THTWSIAPANGDVPRISCLGVR 80 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECC---CCEEEEcCccCCCCCCccCceE
Confidence 35677998864 33334333445558999999998421 3579999999 89999998764 4543 456
Q ss_pred EEEecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEE
Q 009420 153 DHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVV 232 (535)
Q Consensus 153 ~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~ 232 (535)
++++ +++|||+||.+... .+ +++++||+++++|.
T Consensus 81 ~~~~-~~~iyv~GG~~~~~----------------~~-----------------------------~~v~~yd~~t~~W~ 114 (341)
T PLN02153 81 MVAV-GTKLYIFGGRDEKR----------------EF-----------------------------SDFYSYDTVKNEWT 114 (341)
T ss_pred EEEE-CCEEEEECCCCCCC----------------cc-----------------------------CcEEEEECCCCEEE
Confidence 6666 89999999975321 00 02789999999998
Q ss_pred EecCCCCC---CCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeee
Q 009420 233 KQYPAIPG---GDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVL 309 (535)
Q Consensus 233 ~~~p~~p~---~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~ 309 (535)
.+++|+. ..+|..+ ++++ .+++|||+||........ .....+++++||+.. ++|+.
T Consensus 115 -~~~~~~~~~~p~~R~~~--~~~~-----------~~~~iyv~GG~~~~~~~~-----~~~~~~~v~~yd~~~--~~W~~ 173 (341)
T PLN02153 115 -FLTKLDEEGGPEARTFH--SMAS-----------DENHVYVFGGVSKGGLMK-----TPERFRTIEAYNIAD--GKWVQ 173 (341)
T ss_pred -EeccCCCCCCCCCceee--EEEE-----------ECCEEEEECCccCCCccC-----CCcccceEEEEECCC--CeEee
Confidence 4776621 1246543 2233 389999999975321100 001356789999985 89998
Q ss_pred e-cCC---CCceeceeEEccCCeEEEEcCCCCCC--CCcccCCCCccccEEEeCCCCCCCceeecCC---CCCCcccccc
Q 009420 310 E-TMP---QPRVMGDMTLLPNGNVLLINGAGKGT--AGWELGRDPVLAPVVYRPDNIPGSRFDLQNP---STIPRMYHST 380 (535)
Q Consensus 310 ~-~m~---~~R~~~~~v~lpdG~I~vvGG~~~g~--~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~---~~~~R~yhs~ 380 (535)
. +|. .+|..+++++ .+|+|||+||..... .|. .......+++|||+++ +|+.++. ++.+|..|++
T Consensus 174 l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~--~~~~~~~v~~yd~~~~---~W~~~~~~g~~P~~r~~~~~ 247 (341)
T PLN02153 174 LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGK--SDYESNAVQFFDPASG---KWTEVETTGAKPSARSVFAH 247 (341)
T ss_pred CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCc--cceecCceEEEEcCCC---cEEeccccCCCCCCcceeee
Confidence 7 553 7888887665 499999999964210 010 0111346899999999 9999864 6889999987
Q ss_pred eeecCCCcEEEecCCCCcccc-ccCCCCCceeeEEEEcCCCCC
Q 009420 381 AVLLRDGRVLVGGSNPHAYYN-FTGVLFPTELSLEAFSPYYLD 422 (535)
Q Consensus 381 a~LlpDG~V~v~GG~~~~~~~-~~~~~~~~~~~vE~y~Ppyl~ 422 (535)
+++ +++|||.||.....-. ..+. .....++++|+|....
T Consensus 248 ~~~--~~~iyv~GG~~~~~~~~~~~~-~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 248 AVV--GKYIIIFGGEVWPDLKGHLGP-GTLSNEGYALDTETLV 287 (341)
T ss_pred EEE--CCEEEEECcccCCcccccccc-ccccccEEEEEcCccE
Confidence 665 9999999996421100 0000 0012378999998754
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.81 E-value=2.6e-18 Score=162.95 Aligned_cols=280 Identities=15% Similarity=0.208 Sum_probs=189.5
Q ss_pred ceEEcccCCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc-----------
Q 009420 28 GWQLLQKSIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ----------- 96 (535)
Q Consensus 28 ~W~~l~~~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~----------- 96 (535)
.|+.-.+--+.|..|+++..+.+||-+||+-.|...-. -..-.+.+++..+-.|+.++..
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~---------~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp 73 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDA---------KDPIDVHVLNAENYRWTKMPPGITKATIESPYP 73 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCccccccccc---------CCcceeEEeeccceeEEecCcccccccccCCCC
Confidence 47764443456788999999999999999632321110 0123577899999999988641
Q ss_pred --cccccccceecCCCcEEEEcCCCC--C-CCeEEEEcCCCCCCCCceecC---CCCcccccceEEEecCCcEEEEcCcc
Q 009420 97 --SNVWCSSGAVRPDGVLIQTGGFND--G-EKKIRSFVPCNDESCDWKEID---GLGARRWYATDHILPDGRIIIIGGRR 168 (535)
Q Consensus 97 --~~~~c~~~~~l~dG~l~v~GG~~~--g-~~~v~~ydp~~~~~~~W~~~~---~m~~~R~y~s~~~L~dG~vyvvGG~~ 168 (535)
+-.+....+++.++++|+-||.++ + -+....|||. +++|.+.. -++-+|-.|++|++ ++..||+||..
T Consensus 74 ~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~---t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye 149 (392)
T KOG4693|consen 74 AVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE---TNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYE 149 (392)
T ss_pred ccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccc---cccccccceeeecCCccCCceeeEE-CcEEEEecChH
Confidence 123444556777999999999875 3 3567899999 99998754 57888999999999 68999999985
Q ss_pred CCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCCCCC--CCC
Q 009420 169 QFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDP--RSY 246 (535)
Q Consensus 169 ~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~--R~~ 246 (535)
... .+ +- . ++..+|..|-+|.. +-..-. -+ |.+
T Consensus 150 ~~a-~~-------------FS---~--------------------------d~h~ld~~TmtWr~-~~Tkg~-PprwRDF 184 (392)
T KOG4693|consen 150 EDA-QR-------------FS---Q--------------------------DTHVLDFATMTWRE-MHTKGD-PPRWRDF 184 (392)
T ss_pred HHH-Hh-------------hh---c--------------------------cceeEeccceeeee-hhccCC-Cchhhhh
Confidence 421 00 10 0 14568888999973 432111 12 344
Q ss_pred CCCCceEeecccccCCCCCCcEEEEEcCCCCCc--ccccccccccccCCceEEEEecCCCCCeeee----cCCCCceece
Q 009420 247 PSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGA--YEQAEKGVFVAALNTCARIKITDPTPTWVLE----TMPQPRVMGD 320 (535)
Q Consensus 247 ~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~--~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~----~m~~~R~~~~ 320 (535)
+ ++++ +++..||+||..... +. +..+.| .+..-.+|..+ ..|... -.|.+|..|+
T Consensus 185 H---~a~~----------~~~~MYiFGGR~D~~gpfH-s~~e~Y---c~~i~~ld~~T--~aW~r~p~~~~~P~GRRSHS 245 (392)
T KOG4693|consen 185 H---TASV----------IDGMMYIFGGRSDESGPFH-SIHEQY---CDTIMALDLAT--GAWTRTPENTMKPGGRRSHS 245 (392)
T ss_pred h---hhhh----------ccceEEEeccccccCCCcc-chhhhh---cceeEEEeccc--cccccCCCCCcCCCcccccc
Confidence 3 3444 389999999975321 11 001222 23344567664 789874 3578899898
Q ss_pred eEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecC---CCCCCcccccceeecCCCcEEEecCCC
Q 009420 321 MTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQN---PSTIPRMYHSTAVLLRDGRVLVGGSNP 396 (535)
Q Consensus 321 ~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~---~~~~~R~yhs~a~LlpDG~V~v~GG~~ 396 (535)
+-+. ||++|++||+. |.- +.-.....+|||.+. .|+.+. .-+.+|..|.+++ .+++||..||..
T Consensus 246 ~fvY-ng~~Y~FGGYn-g~l-----n~HfndLy~FdP~t~---~W~~I~~~Gk~P~aRRRqC~~v--~g~kv~LFGGTs 312 (392)
T KOG4693|consen 246 TFVY-NGKMYMFGGYN-GTL-----NVHFNDLYCFDPKTS---MWSVISVRGKYPSARRRQCSVV--SGGKVYLFGGTS 312 (392)
T ss_pred eEEE-cceEEEecccc-hhh-----hhhhcceeecccccc---hheeeeccCCCCCcccceeEEE--ECCEEEEecCCC
Confidence 7655 99999999987 432 112236789999999 998764 4677788775544 399999999964
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.78 E-value=5.6e-18 Score=160.76 Aligned_cols=232 Identities=20% Similarity=0.327 Sum_probs=157.2
Q ss_pred ccCCCceEEccc-------------CCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCC
Q 009420 23 DAAGGGWQLLQK-------------SIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNE 89 (535)
Q Consensus 23 ~~~~g~W~~l~~-------------~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~ 89 (535)
.+.+-+|..+++ .+-.|..|.++..++|+|+|||.+. . .|.| +...+|||+|++
T Consensus 50 Na~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND-~------egaC------N~Ly~fDp~t~~ 116 (392)
T KOG4693|consen 50 NAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRND-D------EGAC------NLLYEFDPETNV 116 (392)
T ss_pred eccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccC-c------cccc------ceeeeecccccc
Confidence 344567887654 1234567999999999999999752 1 1433 457899999999
Q ss_pred EEECcc----ccccccccceecCCCcEEEEcCCCCC----CCeEEEEcCCCCCCCCceecCCCC-cccc--cceEEEecC
Q 009420 90 FRPLFV----QSNVWCSSGAVRPDGVLIQTGGFNDG----EKKIRSFVPCNDESCDWKEIDGLG-ARRW--YATDHILPD 158 (535)
Q Consensus 90 w~~~~~----~~~~~c~~~~~l~dG~l~v~GG~~~g----~~~v~~ydp~~~~~~~W~~~~~m~-~~R~--y~s~~~L~d 158 (535)
|..... +..+-.++ +++.+..+||+||+.+. ++++..+|-. +.+|+++..-. -+|| .|+++++ |
T Consensus 117 W~~p~v~G~vPgaRDGHs-AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~---TmtWr~~~Tkg~PprwRDFH~a~~~-~ 191 (392)
T KOG4693|consen 117 WKKPEVEGFVPGARDGHS-ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFA---TMTWREMHTKGDPPRWRDFHTASVI-D 191 (392)
T ss_pred ccccceeeecCCccCCce-eeEECcEEEEecChHHHHHhhhccceeEecc---ceeeeehhccCCCchhhhhhhhhhc-c
Confidence 987653 22333343 44558899999998642 4678899988 89999986433 2455 6788887 8
Q ss_pred CcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCC
Q 009420 159 GRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAI 238 (535)
Q Consensus 159 G~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~ 238 (535)
++.||+||+...+. |+- ... -.|.. ....+|.+|..|.+ .|+-
T Consensus 192 ~~MYiFGGR~D~~g--------------pfH-s~~------e~Yc~---------------~i~~ld~~T~aW~r-~p~~ 234 (392)
T KOG4693|consen 192 GMMYIFGGRSDESG--------------PFH-SIH------EQYCD---------------TIMALDLATGAWTR-TPEN 234 (392)
T ss_pred ceEEEeccccccCC--------------Ccc-chh------hhhcc---------------eeEEEecccccccc-CCCC
Confidence 99999999865321 110 000 01211 24568999999985 4543
Q ss_pred ---CCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee----c
Q 009420 239 ---PGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE----T 311 (535)
Q Consensus 239 ---p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~----~ 311 (535)
|.+ +|+ .++-. +++|+|++||.+. ... .-.+...++||.. ..|... .
T Consensus 235 ~~~P~G-RRS----HS~fv----------Yng~~Y~FGGYng-~ln--------~HfndLy~FdP~t--~~W~~I~~~Gk 288 (392)
T KOG4693|consen 235 TMKPGG-RRS----HSTFV----------YNGKMYMFGGYNG-TLN--------VHFNDLYCFDPKT--SMWSVISVRGK 288 (392)
T ss_pred CcCCCc-ccc----cceEE----------EcceEEEecccch-hhh--------hhhcceeeccccc--chheeeeccCC
Confidence 333 343 23332 6999999999873 211 1246677888874 789875 4
Q ss_pred CCCCceeceeEEccCCeEEEEcCCC
Q 009420 312 MPQPRVMGDMTLLPNGNVLLINGAG 336 (535)
Q Consensus 312 m~~~R~~~~~v~lpdG~I~vvGG~~ 336 (535)
-|.+|..++++++ ++|||++||..
T Consensus 289 ~P~aRRRqC~~v~-g~kv~LFGGTs 312 (392)
T KOG4693|consen 289 YPSARRRQCSVVS-GGKVYLFGGTS 312 (392)
T ss_pred CCCcccceeEEEE-CCEEEEecCCC
Confidence 6788888887665 99999999976
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.68 E-value=5.8e-15 Score=159.24 Aligned_cols=257 Identities=16% Similarity=0.232 Sum_probs=181.6
Q ss_pred CCCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc---c-ccccccceecCCC
Q 009420 35 SIGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ---S-NVWCSSGAVRPDG 110 (535)
Q Consensus 35 ~~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~---~-~~~c~~~~~l~dG 110 (535)
.+..|+.|++++.++++||+||...+.. .. . ..+.++|..+..|...... + .+..+.. ...+.
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~-~~----------~-~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~-~~~~~ 123 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSGDR-LT----------D-LDLYVLDLESQLWTKPAATGDEPSPRYGHSL-SAVGD 123 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCCCc-cc----------c-ceeEEeecCCcccccccccCCCCCcccceeE-EEECC
Confidence 4567899999999999999999642211 10 0 1488999999999876531 2 2222333 33478
Q ss_pred cEEEEcCCCC-C--CCeEEEEcCCCCCCCCceecC---CCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCCee
Q 009420 111 VLIQTGGFND-G--EKKIRSFVPCNDESCDWKEID---GLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVY 184 (535)
Q Consensus 111 ~l~v~GG~~~-g--~~~v~~ydp~~~~~~~W~~~~---~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~ 184 (535)
+||++||... . .+.+..||+. +++|+.+. +++.+|++|++++. +.+|||+||.+... .
T Consensus 124 ~l~lfGG~~~~~~~~~~l~~~d~~---t~~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~----------~-- 187 (482)
T KOG0379|consen 124 KLYLFGGTDKKYRNLNELHSLDLS---TRTWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTG----------D-- 187 (482)
T ss_pred eEEEEccccCCCCChhheEeccCC---CCcEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcc----------c--
Confidence 9999999863 2 4589999999 99999875 57889999999888 68999999986431 0
Q ss_pred eeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCC-CCCCCCCCCCCceEeecccccCCC
Q 009420 185 SLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIP-GGDPRSYPSSGSAVLLPLKNLLAP 263 (535)
Q Consensus 185 ~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p-~~~~R~~~~~g~~v~lpl~~~~~~ 263 (535)
.+ +++++||+++.+|.+ +.... ...+|..| ++++
T Consensus 188 ---~~-----------------------------ndl~i~d~~~~~W~~-~~~~g~~P~pR~gH--~~~~---------- 222 (482)
T KOG0379|consen 188 ---SL-----------------------------NDLHIYDLETSTWSE-LDTQGEAPSPRYGH--AMVV---------- 222 (482)
T ss_pred ---ce-----------------------------eeeeeecccccccee-cccCCCCCCCCCCc--eEEE----------
Confidence 11 137899999999985 43211 11146543 2232
Q ss_pred CCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee----cCCCCceeceeEEccCCeEEEEcCCCCCC
Q 009420 264 SVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE----TMPQPRVMGDMTLLPNGNVLLINGAGKGT 339 (535)
Q Consensus 264 ~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~----~m~~~R~~~~~v~lpdG~I~vvGG~~~g~ 339 (535)
++.+++++||...+. -.++++.++|+.. .+|... .+|.+|..|..+ ....+++++||...+.
T Consensus 223 -~~~~~~v~gG~~~~~----------~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~ 288 (482)
T KOG0379|consen 223 -VGNKLLVFGGGDDGD----------VYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPK 288 (482)
T ss_pred -ECCeEEEEeccccCC----------ceecceEeeeccc--ceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccc
Confidence 489999999976221 1378899999985 889853 689999999987 4588999999976321
Q ss_pred CCcccCCCCccccEEEeCCCCCCCceeecCC----CCCCcccccceeecCCCc
Q 009420 340 AGWELGRDPVLAPVVYRPDNIPGSRFDLQNP----STIPRMYHSTAVLLRDGR 388 (535)
Q Consensus 340 ~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~----~~~~R~yhs~a~LlpDG~ 388 (535)
..++.+...||.++. .|+.+.. .+.+|..|.....-..+.
T Consensus 289 ------~~~l~~~~~l~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (482)
T KOG0379|consen 289 ------QEPLGDLYGLDLETL---VWSKVESVGVVRPSPRLGHAAELIDELGK 332 (482)
T ss_pred ------ccccccccccccccc---ceeeeeccccccccccccccceeeccCCc
Confidence 014557788999998 8887643 467888887666544444
No 25
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.50 E-value=1e-12 Score=141.85 Aligned_cols=213 Identities=19% Similarity=0.230 Sum_probs=153.3
Q ss_pred ccccccceecCCCcEEEEcCCCCC--CC--eEEEEcCCCCCCCCceecC---CCCcccccceEEEecCCcEEEEcCccCC
Q 009420 98 NVWCSSGAVRPDGVLIQTGGFNDG--EK--KIRSFVPCNDESCDWKEID---GLGARRWYATDHILPDGRIIIIGGRRQF 170 (535)
Q Consensus 98 ~~~c~~~~~l~dG~l~v~GG~~~g--~~--~v~~ydp~~~~~~~W~~~~---~m~~~R~y~s~~~L~dG~vyvvGG~~~~ 170 (535)
.++-+++ .+.+.++||+||...+ .. ++.+||-. +..|.... .-+.+|..++++++ +.++|++||.+..
T Consensus 60 ~R~~hs~-~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~---~~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 60 PRAGHSA-VLIGNKLYVFGGYGSGDRLTDLDLYVLDLE---SQLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGTDKK 134 (482)
T ss_pred hhhccce-eEECCEEEEECCCCCCCccccceeEEeecC---CcccccccccCCCCCcccceeEEEE-CCeEEEEccccCC
Confidence 3444444 4449999999997532 22 58999988 78898765 56678988888888 7999999998742
Q ss_pred eeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCC-CCCCCCCCC
Q 009420 171 NYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPG-GDPRSYPSS 249 (535)
Q Consensus 171 ~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~-~~~R~~~~~ 249 (535)
. + . + +.+..||+.+++|.. +.+... ..+|..+
T Consensus 135 ~-----------~---~-~-----------------------------~~l~~~d~~t~~W~~-l~~~~~~P~~r~~H-- 167 (482)
T KOG0379|consen 135 Y-----------R---N-L-----------------------------NELHSLDLSTRTWSL-LSPTGDPPPPRAGH-- 167 (482)
T ss_pred C-----------C---C-h-----------------------------hheEeccCCCCcEEE-ecCcCCCCCCcccc--
Confidence 1 0 0 0 026789999999985 433222 1246643
Q ss_pred CceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee----cCCCCceeceeEEcc
Q 009420 250 GSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE----TMPQPRVMGDMTLLP 325 (535)
Q Consensus 250 g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~----~m~~~R~~~~~v~lp 325 (535)
++++ .+.++||+||.+... ..++++.+||+.+ .+|... +-|.||..|++++.
T Consensus 168 -s~~~----------~g~~l~vfGG~~~~~----------~~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~gH~~~~~- 223 (482)
T KOG0379|consen 168 -SATV----------VGTKLVVFGGIGGTG----------DSLNDLHIYDLET--STWSELDTQGEAPSPRYGHAMVVV- 223 (482)
T ss_pred -eEEE----------ECCEEEEECCccCcc----------cceeeeeeecccc--ccceecccCCCCCCCCCCceEEEE-
Confidence 3333 479999999986321 1378899999985 789974 67889999997765
Q ss_pred CCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecC---CCCCCcccccceeecCCCcEEEecCCCCc
Q 009420 326 NGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQN---PSTIPRMYHSTAVLLRDGRVLVGGSNPHA 398 (535)
Q Consensus 326 dG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~---~~~~~R~yhs~a~LlpDG~V~v~GG~~~~ 398 (535)
++++|++||...+. ..+..+.++|-.+- +|..+. ..+.+|++|+.++. ...+++.||....
T Consensus 224 ~~~~~v~gG~~~~~-------~~l~D~~~ldl~~~---~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 224 GNKLLVFGGGDDGD-------VYLNDVHILDLSTW---EWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred CCeEEEEeccccCC-------ceecceEeeecccc---eeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 99999999976221 22346899999998 999654 57899999987743 7788888887653
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.36 E-value=2.4e-11 Score=122.29 Aligned_cols=220 Identities=20% Similarity=0.302 Sum_probs=149.7
Q ss_pred CCcEEEEcCCC-CC-----CCeEEEEcCCCCCCCCceecC--CCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCCC
Q 009420 109 DGVLIQTGGFN-DG-----EKKIRSFVPCNDESCDWKEID--GLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGA 180 (535)
Q Consensus 109 dG~l~v~GG~~-~g-----~~~v~~ydp~~~~~~~W~~~~--~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~ 180 (535)
...|+++||-. +| .+....||.. +++|..+. +-+.+|..|.+++.+.|.+++.||--.. |..
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k---~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-----Pnq-- 147 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTK---KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-----PNQ-- 147 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEecc---ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-----cch--
Confidence 34899999954 23 2567889999 99999885 5678899999999998999999995321 111
Q ss_pred CCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCC-CCCCCCCCCCceEeecccc
Q 009420 181 PNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPG-GDPRSYPSSGSAVLLPLKN 259 (535)
Q Consensus 181 ~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~-~~~R~~~~~g~~v~lpl~~ 259 (535)
..|- -| .+.|+||.++++|++ +. +++ ..+|+.| -..+
T Consensus 148 -----~qF~-----------HY----------------kD~W~fd~~trkweq-l~-~~g~PS~RSGH--RMva------ 185 (521)
T KOG1230|consen 148 -----EQFH-----------HY----------------KDLWLFDLKTRKWEQ-LE-FGGGPSPRSGH--RMVA------ 185 (521)
T ss_pred -----hhhh-----------hh----------------hheeeeeeccchhee-ec-cCCCCCCCccc--eeEE------
Confidence 1110 01 136899999999995 53 222 1256532 1222
Q ss_pred cCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee--c--CCCCceeceeEEccCCeEEEEcCC
Q 009420 260 LLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE--T--MPQPRVMGDMTLLPNGNVLLINGA 335 (535)
Q Consensus 260 ~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~--~--m~~~R~~~~~v~lpdG~I~vvGG~ 335 (535)
+..+|+++||..... . -.+| .+.++++|+.+ =+|+.. + -|.+|+.+++.+.|+|.|||.||+
T Consensus 186 -----wK~~lilFGGFhd~n-r---~y~Y---yNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 186 -----WKRQLILFGGFHDSN-R---DYIY---YNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred -----eeeeEEEEcceecCC-C---ceEE---eeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcch
Confidence 589999999985311 0 0122 67899999985 789986 3 489999999999999999999998
Q ss_pred CCCCCCcccCC-CCccccEEEeCCCCCC--CceeecCC---CCCCcccccceeecCCCcEEEecCC
Q 009420 336 GKGTAGWELGR-DPVLAPVVYRPDNIPG--SRFDLQNP---STIPRMYHSTAVLLRDGRVLVGGSN 395 (535)
Q Consensus 336 ~~g~~g~~~~~-~~~~~~e~YDP~t~~g--~~Wt~~~~---~~~~R~yhs~a~LlpDG~V~v~GG~ 395 (535)
+.-..--..+. .......+-+|+.+.. -.|+.|.+ -|.||...|+++ .++++-|..||-
T Consensus 252 sK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~v-a~n~kal~FGGV 316 (521)
T KOG1230|consen 252 SKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAV-AKNHKALFFGGV 316 (521)
T ss_pred hHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEE-ecCCceEEecce
Confidence 63210000000 1122456678887322 26788765 578999988765 589999999995
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.31 E-value=1e-10 Score=117.85 Aligned_cols=255 Identities=18% Similarity=0.227 Sum_probs=162.8
Q ss_pred CCcceeEEEEee--CCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcc--ccccccccce-ecCCC
Q 009420 36 IGISSMHMQLLN--NDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFV--QSNVWCSSGA-VRPDG 110 (535)
Q Consensus 36 ~~~~~~~~~~~~--~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~--~~~~~c~~~~-~l~dG 110 (535)
|.+|........ ...++++||.-.+ .+.+ -..+....||.++++|+.+.. .+.++|++++ +.+.|
T Consensus 64 PspRsn~sl~~nPekeELilfGGEf~n-gqkT---------~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~ 133 (521)
T KOG1230|consen 64 PSPRSNPSLFANPEKEELILFGGEFYN-GQKT---------HVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSN 133 (521)
T ss_pred CCCCCCcceeeccCcceeEEecceeec-ceeE---------EEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccC
Confidence 445554444432 4489999994211 1211 134567799999999999964 3466776655 45668
Q ss_pred cEEEEcCCCCC--------CCeEEEEcCCCCCCCCceecC--CCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCCC
Q 009420 111 VLIQTGGFNDG--------EKKIRSFVPCNDESCDWKEID--GLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGA 180 (535)
Q Consensus 111 ~l~v~GG~~~g--------~~~v~~ydp~~~~~~~W~~~~--~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~ 180 (535)
.++++||-... .+..++||.. +++|+++. .=+.+|..|-+++. -.+++++||....+
T Consensus 134 ~l~~fGGEfaSPnq~qF~HYkD~W~fd~~---trkweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~n--------- 200 (521)
T KOG1230|consen 134 ILWLFGGEFASPNQEQFHHYKDLWLFDLK---TRKWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSN--------- 200 (521)
T ss_pred eEEEeccccCCcchhhhhhhhheeeeeec---cchheeeccCCCCCCCccceeEEe-eeeEEEEcceecCC---------
Confidence 99999996521 3789999999 99999986 46789999999988 58999999975321
Q ss_pred CCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCCeEEEecCCCCC--CCCCCCCCCCceEeeccc
Q 009420 181 PNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNNKVVKQYPAIPG--GDPRSYPSSGSAVLLPLK 258 (535)
Q Consensus 181 ~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~--~~~R~~~~~g~~v~lpl~ 258 (535)
+.- .+| +++++||..+=+|.+ +.+ ++ ..+|+ |.... + +
T Consensus 201 r~y----------------~Yy----------------NDvy~FdLdtykW~K-lep-sga~PtpRS----Gcq~~-v-t 240 (521)
T KOG1230|consen 201 RDY----------------IYY----------------NDVYAFDLDTYKWSK-LEP-SGAGPTPRS----GCQFS-V-T 240 (521)
T ss_pred Cce----------------EEe----------------eeeEEEeccceeeee-ccC-CCCCCCCCC----cceEE-e-c
Confidence 000 001 247899999999996 543 43 22454 43321 1 1
Q ss_pred ccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCC-CCC--eeee-c---CCCCceeceeEEccCCeEEE
Q 009420 259 NLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDP-TPT--WVLE-T---MPQPRVMGDMTLLPNGNVLL 331 (535)
Q Consensus 259 ~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~-~~~--W~~~-~---m~~~R~~~~~v~lpdG~I~v 331 (535)
..++|++.||+..-.... ..+- -...+....++|++. .++ |+.+ + -|.||+..+.++.++++-|.
T Consensus 241 ------pqg~i~vyGGYsK~~~kK-~~dK-G~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~ 312 (521)
T KOG1230|consen 241 ------PQGGIVVYGGYSKQRVKK-DVDK-GTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALF 312 (521)
T ss_pred ------CCCcEEEEcchhHhhhhh-hhhc-CceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEE
Confidence 289999999975311000 0000 012445666777642 234 5554 2 47899999888899999999
Q ss_pred EcCCCCCCCCcccCCCC-----ccccEEEeCCCCCCCceeec
Q 009420 332 INGAGKGTAGWELGRDP-----VLAPVVYRPDNIPGSRFDLQ 368 (535)
Q Consensus 332 vGG~~~g~~g~~~~~~~-----~~~~e~YDP~t~~g~~Wt~~ 368 (535)
+||.-. .. ...+. ......||-..+ +|...
T Consensus 313 FGGV~D-~e---eeeEsl~g~F~NDLy~fdlt~n---rW~~~ 347 (521)
T KOG1230|consen 313 FGGVCD-LE---EEEESLSGEFFNDLYFFDLTRN---RWSEG 347 (521)
T ss_pred ecceec-cc---ccchhhhhhhhhhhhheecccc---hhhHh
Confidence 999752 10 00010 124578899999 99754
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.29 E-value=8.4e-11 Score=120.78 Aligned_cols=276 Identities=17% Similarity=0.191 Sum_probs=166.6
Q ss_pred CCCEEECcc----ccccccccceecCCCcEEEEcCCCCC-CCeEEEEcCCCCCCCCceecC---CCCcccccceEEEecC
Q 009420 87 TNEFRPLFV----QSNVWCSSGAVRPDGVLIQTGGFNDG-EKKIRSFVPCNDESCDWKEID---GLGARRWYATDHILPD 158 (535)
Q Consensus 87 t~~w~~~~~----~~~~~c~~~~~l~dG~l~v~GG~~~g-~~~v~~ydp~~~~~~~W~~~~---~m~~~R~y~s~~~L~d 158 (535)
--.|+.+.. .+..+...-++....-|+|+||-++| .+...+|+.+ +++|..-+ +.+.+--.++.+.+ .
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa---tnqWf~PavrGDiPpgcAA~Gfvcd-G 91 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA---TNQWFAPAVRGDIPPGCAAFGFVCD-G 91 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc---cceeecchhcCCCCCchhhcceEec-C
Confidence 345777642 12223333334457789999998776 4778899999 99997543 66666555555555 5
Q ss_pred CcEEEEcCccC---CeeEEE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCCC-----
Q 009420 159 GRIIIIGGRRQ---FNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVNN----- 229 (535)
Q Consensus 159 G~vyvvGG~~~---~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t~----- 229 (535)
.|||++||.-+ .+-|.| -...-..|..+..-...+.. .++...-|.|.+...|-|+|||-.-+.=||++|
T Consensus 92 trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~-pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL 170 (830)
T KOG4152|consen 92 TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGP-PPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL 170 (830)
T ss_pred ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCC-CCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence 69999999753 233455 22221233332110011111 344555678999999999999832222233332
Q ss_pred ---------------eEEEecC--CCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccC
Q 009420 230 ---------------KVVKQYP--AIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAAL 292 (535)
Q Consensus 230 ---------------~W~~~~p--~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~ 292 (535)
.|...+. .+|- +|.- +.+|++. ....-..|.||.||.. +. .+
T Consensus 171 nDlY~leL~~Gsgvv~W~ip~t~Gv~P~--pRES---HTAViY~----eKDs~~skmvvyGGM~-G~-----------RL 229 (830)
T KOG4152|consen 171 NDLYILELRPGSGVVAWDIPITYGVLPP--PRES---HTAVIYT----EKDSKKSKMVVYGGMS-GC-----------RL 229 (830)
T ss_pred cceEEEEeccCCceEEEecccccCCCCC--Cccc---ceeEEEE----eccCCcceEEEEcccc-cc-----------cc
Confidence 3542111 1222 4653 4566642 1222357999999986 32 36
Q ss_pred CceEEEEecCCCCCeeee----cCCCCceeceeEEccCCeEEEEcCCCC--C----CCCcccCCCCccccEEEeCCCCCC
Q 009420 293 NTCARIKITDPTPTWVLE----TMPQPRVMGDMTLLPNGNVLLINGAGK--G----TAGWELGRDPVLAPVVYRPDNIPG 362 (535)
Q Consensus 293 ~s~e~~d~~~~~~~W~~~----~m~~~R~~~~~v~lpdG~I~vvGG~~~--g----~~g~~~~~~~~~~~e~YDP~t~~g 362 (535)
.+...+|++. -.|.+. --|.||+-|.++++ .+|+||+||.-- + .+....+-....+.-|+|-.+.
T Consensus 230 gDLW~Ldl~T--l~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~-- 304 (830)
T KOG4152|consen 230 GDLWTLDLDT--LTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM-- 304 (830)
T ss_pred cceeEEecce--eecccccccCCCCCCcccccceee-cceeEEecceeeeeccccccccccceeeeccceeeeeecch--
Confidence 6777788874 789874 35789999987655 899999999521 0 0000011112345678999999
Q ss_pred Cceeec-------CCCCCCcccccceeecCCCcEEEecCCC
Q 009420 363 SRFDLQ-------NPSTIPRMYHSTAVLLRDGRVLVGGSNP 396 (535)
Q Consensus 363 ~~Wt~~-------~~~~~~R~yhs~a~LlpDG~V~v~GG~~ 396 (535)
+|+.+ ...+.+|..|.++.+ +-|+|+=-|.+
T Consensus 305 -~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtRlYiWSGRD 342 (830)
T KOG4152|consen 305 -AWETLLMDTLEDNTIPRARAGHCAVAI--GTRLYIWSGRD 342 (830)
T ss_pred -heeeeeeccccccccccccccceeEEe--ccEEEEEeccc
Confidence 99875 125677888865554 88999988865
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=3.7e-10 Score=112.43 Aligned_cols=256 Identities=18% Similarity=0.272 Sum_probs=153.0
Q ss_pred CCCEEECcccc-ccccccceecCCCcEEEEcCCCCC-------CCeEEEEcCCCCCCCCceecCC-CCcccccceEEEec
Q 009420 87 TNEFRPLFVQS-NVWCSSGAVRPDGVLIQTGGFNDG-------EKKIRSFVPCNDESCDWKEIDG-LGARRWYATDHILP 157 (535)
Q Consensus 87 t~~w~~~~~~~-~~~c~~~~~l~dG~l~v~GG~~~g-------~~~v~~ydp~~~~~~~W~~~~~-m~~~R~y~s~~~L~ 157 (535)
...|+.++..+ ..+-.+.++..+|+||++||.... .+++.+|||. +|+|..+.. .+..--.++++.+.
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~---~nsW~kl~t~sP~gl~G~~~~~~~ 145 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPS---TNSWHKLDTRSPTGLVGASTFSLN 145 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCC---CChhheeccccccccccceeEecC
Confidence 45799998543 233334445569999999997521 3678999999 999999873 34455567778885
Q ss_pred CCcEEEEcCccCCeeE-EE-eC--CCCC--Ceee--ecccc-ccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCC
Q 009420 158 DGRIIIIGGRRQFNYE-FY-PK--NGAP--NVYS--LPFLV-QTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVN 228 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E-~y-P~--~~~~--~w~~--~~~l~-~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t 228 (535)
+.+||+.||.+..... +| .- .+.+ .+.. ..++. ...| | +-+..+..|||.+
T Consensus 146 ~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d-------y-------------~~n~ev~sy~p~~ 205 (381)
T COG3055 146 GTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED-------Y-------------FFNKEVLSYDPST 205 (381)
T ss_pred CceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH-------h-------------ccccccccccccc
Confidence 5599999998742111 11 00 0000 1100 01110 0111 0 0122367899999
Q ss_pred CeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCC--ceEEEEecCCCCC
Q 009420 229 NKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALN--TCARIKITDPTPT 306 (535)
Q Consensus 229 ~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~--s~e~~d~~~~~~~ 306 (535)
+.|.. +-..| .++.+|++++. -+++|.++-|.-. |-++ .+.+++....+-+
T Consensus 206 n~W~~-~G~~p-----f~~~aGsa~~~---------~~n~~~lInGEiK------------pGLRt~~~k~~~~~~~~~~ 258 (381)
T COG3055 206 NQWRN-LGENP-----FYGNAGSAVVI---------KGNKLTLINGEIK------------PGLRTAEVKQADFGGDNLK 258 (381)
T ss_pred chhhh-cCcCc-----ccCccCcceee---------cCCeEEEEcceec------------CCccccceeEEEeccCcee
Confidence 99983 43233 34455776652 2677888877532 2233 3456777766678
Q ss_pred eeee-cCCCCceec------eeEEccCCeEEEEcCCCCCC------CCcccCCCCc-----cccEEEeCCCCCCCceeec
Q 009420 307 WVLE-TMPQPRVMG------DMTLLPNGNVLLINGAGKGT------AGWELGRDPV-----LAPVVYRPDNIPGSRFDLQ 368 (535)
Q Consensus 307 W~~~-~m~~~R~~~------~~v~lpdG~I~vvGG~~~g~------~g~~~~~~~~-----~~~e~YDP~t~~g~~Wt~~ 368 (535)
|... ++|.+-... +..--.++.++|.||+.... .|+-.+.+-+ ..+.++| .+ .|+.+
T Consensus 259 w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g---~Wk~~ 333 (381)
T COG3055 259 WLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NG---SWKIV 333 (381)
T ss_pred eeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CC---ceeee
Confidence 9987 555443211 11112488999999986311 1111122211 2355556 78 99999
Q ss_pred CCCCCCcccccceeecCCCcEEEecCCCCcc
Q 009420 369 NPSTIPRMYHSTAVLLRDGRVLVGGSNPHAY 399 (535)
Q Consensus 369 ~~~~~~R~yhs~a~LlpDG~V~v~GG~~~~~ 399 (535)
..++.++.|- +.++-.+.||++||+...+
T Consensus 334 GeLp~~l~YG--~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 334 GELPQGLAYG--VSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred cccCCCccce--EEEecCCcEEEEccccCCC
Confidence 9999999984 4455688999999986553
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.24 E-value=6.2e-10 Score=110.87 Aligned_cols=240 Identities=22% Similarity=0.315 Sum_probs=145.9
Q ss_pred CceEEcccCC-CcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcccccc-ccccc
Q 009420 27 GGWQLLQKSI-GISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNV-WCSSG 104 (535)
Q Consensus 27 g~W~~l~~~~-~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~-~c~~~ 104 (535)
..|+.+..-+ +.|-+.+.++.++|+|++||..-..+ ..+ .....+..|||.+|+|..+.....+ ...+.
T Consensus 70 k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~--~~~-------~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~ 140 (381)
T COG3055 70 KGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS--SSP-------QVFNDAYRYDPSTNSWHKLDTRSPTGLVGAS 140 (381)
T ss_pred CCceEcccCCCcccccchheeeCCeEEEeeccccCCC--CCc-------eEeeeeEEecCCCChhheeccccccccccce
Confidence 4688887654 45667777778999999999631111 100 1245789999999999999854333 33233
Q ss_pred eecCCC-cEEEEcCCC-----------------------------C-------CCCeEEEEcCCCCCCCCceecCCCCc-
Q 009420 105 AVRPDG-VLIQTGGFN-----------------------------D-------GEKKIRSFVPCNDESCDWKEIDGLGA- 146 (535)
Q Consensus 105 ~~l~dG-~l~v~GG~~-----------------------------~-------g~~~v~~ydp~~~~~~~W~~~~~m~~- 146 (535)
++.+++ +|+++||.+ + -.+.+..|||+ ++.|+.+...+.
T Consensus 141 ~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~---~n~W~~~G~~pf~ 217 (381)
T COG3055 141 TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS---TNQWRNLGENPFY 217 (381)
T ss_pred eEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc---cchhhhcCcCccc
Confidence 344455 999999952 0 13578899999 999998886553
Q ss_pred ccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEE-
Q 009420 147 RRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFD- 225 (535)
Q Consensus 147 ~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yD- 225 (535)
++.. ++++..++++.+|-|.- +| .|+.. .+.++|
T Consensus 218 ~~aG-sa~~~~~n~~~lInGEi------Kp-----------GLRt~---------------------------~~k~~~~ 252 (381)
T COG3055 218 GNAG-SAVVIKGNKLTLINGEI------KP-----------GLRTA---------------------------EVKQADF 252 (381)
T ss_pred CccC-cceeecCCeEEEEccee------cC-----------Ccccc---------------------------ceeEEEe
Confidence 4544 55666678898887742 22 12110 022233
Q ss_pred -CCCCeEEEecCCCCCCCCCCCCCCCce-EeecccccCCCCCCcEEEEEcCCCC-Ccccccccc-cc-ccc-----CCce
Q 009420 226 -YVNNKVVKQYPAIPGGDPRSYPSSGSA-VLLPLKNLLAPSVAAEVLVCGGAPK-GAYEQAEKG-VF-VAA-----LNTC 295 (535)
Q Consensus 226 -p~t~~W~~~~p~~p~~~~R~~~~~g~~-v~lpl~~~~~~~~~gkIyv~GG~~~-~~~~~~~~~-~~-~pa-----~~s~ 295 (535)
-..-+|. .++++|.. -.....|.+ .+ ..+.+++++|.||..- ++..+-.+. .| .+. .+.+
T Consensus 253 ~~~~~~w~-~l~~lp~~--~~~~~eGvAGaf-------~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~V 322 (381)
T COG3055 253 GGDNLKWL-KLSDLPAP--IGSNKEGVAGAF-------SGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEV 322 (381)
T ss_pred ccCceeee-eccCCCCC--CCCCccccceec-------cceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceE
Confidence 3345787 47666643 111111211 11 2245899999999752 111100000 11 111 2344
Q ss_pred EEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCCC
Q 009420 296 ARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKG 338 (535)
Q Consensus 296 e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g 338 (535)
..+| ++.|+.. .||.++.++.++.. +++||++||...+
T Consensus 323 y~~d----~g~Wk~~GeLp~~l~YG~s~~~-nn~vl~IGGE~~~ 361 (381)
T COG3055 323 YIFD----NGSWKIVGELPQGLAYGVSLSY-NNKVLLIGGETSG 361 (381)
T ss_pred EEEc----CCceeeecccCCCccceEEEec-CCcEEEEccccCC
Confidence 4455 4899998 99999999886654 8899999997643
No 31
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.20 E-value=7.5e-10 Score=113.93 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=167.0
Q ss_pred cccCCCceEEcccC----CCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcc--
Q 009420 22 TDAAGGGWQLLQKS----IGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFV-- 95 (535)
Q Consensus 22 ~~~~~g~W~~l~~~----~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~-- 95 (535)
++...=+|..+... +..|-.|-++....-+++|||-+.| + .....+|+..||+|..-+.
T Consensus 12 a~~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG---i------------iDELHvYNTatnqWf~PavrG 76 (830)
T KOG4152|consen 12 AEKNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG---I------------IDELHVYNTATNQWFAPAVRG 76 (830)
T ss_pred hhhcccceEEEecccCCCCCccccchheeeeeeEEEecCCccc---c------------hhhhhhhccccceeecchhcC
Confidence 44555679887643 3445556677778889999985422 1 1345689999999986553
Q ss_pred ccccccccceecCCC-cEEEEcCCCC-CCCeEEEEcCCCCCCCCceecC-------CCCcccccceEEEecCCcEEEEcC
Q 009420 96 QSNVWCSSGAVRPDG-VLIQTGGFND-GEKKIRSFVPCNDESCDWKEID-------GLGARRWYATDHILPDGRIIIIGG 166 (535)
Q Consensus 96 ~~~~~c~~~~~l~dG-~l~v~GG~~~-g~~~v~~ydp~~~~~~~W~~~~-------~m~~~R~y~s~~~L~dG~vyvvGG 166 (535)
....-|++..++.|| |||++||..+ |.-+-++|..+.. .-.|.++. ..+-+|-.|+-... .+|-|++||
T Consensus 77 DiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQas-RWeWkrlkp~~p~nG~pPCPRlGHSFsl~-gnKcYlFGG 154 (830)
T KOG4152|consen 77 DIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQAS-RWEWKRLKPKTPKNGPPPCPRLGHSFSLV-GNKCYLFGG 154 (830)
T ss_pred CCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhh-hhhHhhcCCCCCCCCCCCCCccCceeEEe-ccEeEEecc
Confidence 234567776666665 7999999864 3445667877621 22455653 36678999887776 689999999
Q ss_pred ccCC------ee-----EEE-----eCCCCCCeeeeccccccCCccccCCCcceEEEee---C---CcEEEEecC-----
Q 009420 167 RRQF------NY-----EFY-----PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNV---D---GFLFIFANN----- 219 (535)
Q Consensus 167 ~~~~------~~-----E~y-----P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~---d---G~ifv~gg~----- 219 (535)
..+. .+ ++| |-..--.|. .|. +... .+...-.|..+.. | -|++++||-
T Consensus 155 LaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~-ip~---t~Gv-~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RL 229 (830)
T KOG4152|consen 155 LANDSEDPKNNVPRYLNDLYILELRPGSGVVAWD-IPI---TYGV-LPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRL 229 (830)
T ss_pred ccccccCcccccchhhcceEEEEeccCCceEEEe-ccc---ccCC-CCCCcccceeEEEEeccCCcceEEEEcccccccc
Confidence 7432 11 222 111000132 110 0000 0111122443333 3 379999983
Q ss_pred -eEEEEECCCCeEEEecCCCCCC--CCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCC---CcccccccccccccCC
Q 009420 220 -RAILFDYVNNKVVKQYPAIPGG--DPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPK---GAYEQAEKGVFVAALN 293 (535)
Q Consensus 220 -~~~~yDp~t~~W~~~~p~~p~~--~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~---~~~~~~~~~~~~pa~~ 293 (535)
+.|..|.++-+|.+ |.+.+- .+|+-| ++++ ..+|.||+||.-. .....+..+.-=-+++
T Consensus 230 gDLW~Ldl~Tl~W~k--p~~~G~~PlPRSLH---sa~~----------IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTs 294 (830)
T KOG4152|consen 230 GDLWTLDLDTLTWNK--PSLSGVAPLPRSLH---SATT----------IGNKMYVFGGWVPLVMDDVKVATHEKEWKCTS 294 (830)
T ss_pred cceeEEecceeeccc--ccccCCCCCCcccc---ccee----------ecceeEEecceeeeeccccccccccceeeecc
Confidence 57889999999984 333211 157764 3333 3899999999631 0110000011112466
Q ss_pred ceEEEEecCCCCCeeee--------cCCCCceeceeEEccCCeEEEEcCCC
Q 009420 294 TCARIKITDPTPTWVLE--------TMPQPRVMGDMTLLPNGNVLLINGAG 336 (535)
Q Consensus 294 s~e~~d~~~~~~~W~~~--------~m~~~R~~~~~v~lpdG~I~vvGG~~ 336 (535)
+..|+++.+ ..|+.. ..|.+|..|+++++ +.++|+--|.+
T Consensus 295 sl~clNldt--~~W~tl~~d~~ed~tiPR~RAGHCAvAi-gtRlYiWSGRD 342 (830)
T KOG4152|consen 295 SLACLNLDT--MAWETLLMDTLEDNTIPRARAGHCAVAI-GTRLYIWSGRD 342 (830)
T ss_pred ceeeeeecc--hheeeeeeccccccccccccccceeEEe-ccEEEEEeccc
Confidence 778888875 789863 26888999998776 89999999876
No 32
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=99.18 E-value=8.6e-10 Score=107.48 Aligned_cols=169 Identities=22% Similarity=0.366 Sum_probs=104.3
Q ss_pred CeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCc
Q 009420 123 KKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLY 202 (535)
Q Consensus 123 ~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~y 202 (535)
.....|||. +++++.+. +...-|+.+.+.|+||+++++||.....
T Consensus 46 a~s~~yD~~---tn~~rpl~-v~td~FCSgg~~L~dG~ll~tGG~~~G~------------------------------- 90 (243)
T PF07250_consen 46 AHSVEYDPN---TNTFRPLT-VQTDTFCSGGAFLPDGRLLQTGGDNDGN------------------------------- 90 (243)
T ss_pred EEEEEEecC---CCcEEecc-CCCCCcccCcCCCCCCCEEEeCCCCccc-------------------------------
Confidence 456789999 89998775 4567788899999999999999974310
Q ss_pred ceEEEeeCCcEEEEecCeEEEEECCC----CeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCC
Q 009420 203 PFVFLNVDGFLFIFANNRAILFDYVN----NKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKG 278 (535)
Q Consensus 203 p~~~~~~dG~ifv~gg~~~~~yDp~t----~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~ 278 (535)
+.+..|+|.+ ..|.+ .+.. |..+|+|| ++..|| +|+|+|+||....
T Consensus 91 ----------------~~ir~~~p~~~~~~~~w~e-~~~~-m~~~RWYp---T~~~L~---------DG~vlIvGG~~~~ 140 (243)
T PF07250_consen 91 ----------------KAIRIFTPCTSDGTCDWTE-SPND-MQSGRWYP---TATTLP---------DGRVLIVGGSNNP 140 (243)
T ss_pred ----------------cceEEEecCCCCCCCCceE-Cccc-ccCCCccc---cceECC---------CCCEEEEeCcCCC
Confidence 0123444433 56874 4432 34479997 455665 8999999998632
Q ss_pred cccccccccccccCCceEEEEecCCCCCeeee-cC--CCC-ceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEE
Q 009420 279 AYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TM--PQP-RVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVV 354 (535)
Q Consensus 279 ~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m--~~~-R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~ 354 (535)
.+ .|.|.... ......|... .. ..+ -.+.-+.+||||+||+.+... ..+
T Consensus 141 t~------E~~P~~~~------~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~---------------s~i 193 (243)
T PF07250_consen 141 TY------EFWPPKGP------GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG---------------SII 193 (243)
T ss_pred cc------cccCCccC------CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC---------------cEE
Confidence 22 12222100 0000111111 00 011 123345689999999987643 389
Q ss_pred EeCCCCCCCce-eecCCCCC-Cccccc--ceeecCC
Q 009420 355 YRPDNIPGSRF-DLQNPSTI-PRMYHS--TAVLLRD 386 (535)
Q Consensus 355 YDP~t~~g~~W-t~~~~~~~-~R~yhs--~a~LlpD 386 (535)
||+.++ ++ +.++.++- +|.|.+ +++|||=
T Consensus 194 ~d~~~n---~v~~~lP~lPg~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 194 YDYKTN---TVVRTLPDLPGGPRNYPASGSSVMLPL 226 (243)
T ss_pred EeCCCC---eEEeeCCCCCCCceecCCCcceEEecC
Confidence 999999 87 67777663 688864 3455554
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.87 E-value=4.7e-09 Score=76.94 Aligned_cols=50 Identities=18% Similarity=0.344 Sum_probs=41.7
Q ss_pred CceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCc
Q 009420 315 PRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPR 375 (535)
Q Consensus 315 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R 375 (535)
||..++++++ +++|||+||.... .....++++|||+++ +|+.+++|+.||
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence 6888887665 9999999998631 234568999999999 999999999998
No 34
>PF13964 Kelch_6: Kelch motif
Probab=98.55 E-value=9.4e-08 Score=69.98 Aligned_cols=46 Identities=17% Similarity=0.415 Sum_probs=39.2
Q ss_pred ccccceecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCCceecCCCCccc
Q 009420 100 WCSSGAVRPDGVLIQTGGFND---GEKKIRSFVPCNDESCDWKEIDGLGARR 148 (535)
Q Consensus 100 ~c~~~~~l~dG~l~v~GG~~~---g~~~v~~ydp~~~~~~~W~~~~~m~~~R 148 (535)
++..+++..+++|||+||... ..+++++|||. +++|+++++|+.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~---t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPE---TNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCC---CCcEEECCCCCCCC
Confidence 345566677999999999865 25799999999 99999999999988
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.45 E-value=1.1e-07 Score=68.46 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=37.8
Q ss_pred CceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCC
Q 009420 315 PRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPST 372 (535)
Q Consensus 315 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~ 372 (535)
||.+++++++ +++|||+||... ......++|+|||.++ +|+.+++|+
T Consensus 1 pR~~~~~~~~-~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVV-GNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEE-TTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred CCccCEEEEE-CCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence 5888886665 999999999873 1235668999999999 999998875
No 36
>smart00612 Kelch Kelch domain.
Probab=98.44 E-value=2.7e-07 Score=66.01 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=37.4
Q ss_pred eEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceee
Q 009420 328 NVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVL 383 (535)
Q Consensus 328 ~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~L 383 (535)
+|||+||... .....++|+|||.++ +|+.+++|+.+|.+|+++++
T Consensus 1 ~iyv~GG~~~--------~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDG--------GQRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCC--------CceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence 5899999752 123457899999999 99999999999999987665
No 37
>smart00612 Kelch Kelch domain.
Probab=98.30 E-value=1.1e-06 Score=62.80 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=38.1
Q ss_pred cEEEEcCCCC--CCCeEEEEcCCCCCCCCceecCCCCcccccceEEEe
Q 009420 111 VLIQTGGFND--GEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHIL 156 (535)
Q Consensus 111 ~l~v~GG~~~--g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L 156 (535)
+||++||... ..+++++|||. +++|++.++|+.+|.+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPE---TNKWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCC---CCeEccCCCCCCccccceEEEe
Confidence 5899999863 25789999999 9999999999999999998887
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.15 E-value=3.6e-06 Score=60.48 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=36.8
Q ss_pred cceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc
Q 009420 38 ISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ 96 (535)
Q Consensus 38 ~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~ 96 (535)
+|..|+++..+++||++||.+. ... ....+++||+++++|++++.+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-~~~------------~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-NNQ------------PTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-TSS------------BEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecc-cCc------------eeeeEEEEeCCCCEEEEcCCC
Confidence 3678999999999999999862 111 356899999999999998754
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.12 E-value=2.2e-06 Score=62.35 Aligned_cols=48 Identities=8% Similarity=0.181 Sum_probs=29.8
Q ss_pred CceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCC
Q 009420 315 PRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPST 372 (535)
Q Consensus 315 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~ 372 (535)
||..|+++.+.+++|||+||.... ...+..+++||++++ +|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence 689999888878999999998631 123557899999999 999998776
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.08 E-value=6.6e-06 Score=59.90 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCccccccee
Q 009420 326 NGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAV 382 (535)
Q Consensus 326 dG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~ 382 (535)
+++|||+||.... ......++.+||+.++ +|+++++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~------~~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDD------GGTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCC------CCCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence 5799999998721 1233457899999999 9999999999999997664
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.04 E-value=1e-05 Score=58.83 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=35.8
Q ss_pred CceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCC
Q 009420 315 PRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPST 372 (535)
Q Consensus 315 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~ 372 (535)
+|..|.++ ++|+||||+||...+. .......+++||++++ +|+.+++|+
T Consensus 1 ~r~~hs~~-~~~~kiyv~GG~~~~~-----~~~~~~~v~~~d~~t~---~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAV-VLDGKIYVFGGYGTDN-----GGSSSNDVWVFDTETN---QWTELSPMG 49 (49)
T ss_pred CccceEEE-EECCEEEEECCcccCC-----CCcccceeEEEECCCC---EEeecCCCC
Confidence 57777755 5699999999991111 1122347899999999 999998874
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.98 E-value=1.7e-05 Score=57.66 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=35.6
Q ss_pred ceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc
Q 009420 39 SSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ 96 (535)
Q Consensus 39 ~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~ 96 (535)
|..|+++++++|||++||........ ....+.+||+++++|+.++.+
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~~~-----------~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNGGS-----------SSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCCCc-----------ccceeEEEECCCCEEeecCCC
Confidence 67899999999999999981111100 245789999999999998754
No 43
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.92 E-value=1.8e-05 Score=57.62 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCC-C---CCeEEEEcCCCCCCCCceecCCCCcccccceEEE
Q 009420 109 DGVLIQTGGFND-G---EKKIRSFVPCNDESCDWKEIDGLGARRWYATDHI 155 (535)
Q Consensus 109 dG~l~v~GG~~~-g---~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~ 155 (535)
+++|||+||... + .+++++||+. +++|+++++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~---~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLD---TNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECC---CCEEEECCCCCCCccceEEEE
Confidence 578999999872 2 5789999999 999999999999999998875
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.57 E-value=4.1e-05 Score=55.53 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=27.1
Q ss_pred cccccceecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCCceecCCCC
Q 009420 99 VWCSSGAVRPDGVLIQTGGFND---GEKKIRSFVPCNDESCDWKEIDGLG 145 (535)
Q Consensus 99 ~~c~~~~~l~dG~l~v~GG~~~---g~~~v~~ydp~~~~~~~W~~~~~m~ 145 (535)
|++++.+.+.+++||++||... ..+++++||+. +++|+++++|+
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~---~~~W~~~~~~P 48 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIE---TNTWTRLPSMP 48 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETT---TTEEEE--SS-
T ss_pred cceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECC---CCEEEECCCCC
Confidence 4555666666799999999853 25789999999 99999998886
No 45
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.56 E-value=0.11 Score=54.82 Aligned_cols=259 Identities=13% Similarity=0.164 Sum_probs=126.5
Q ss_pred EEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCC--EEECcccc--------ccccccceecCCCcEE
Q 009420 44 QLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNE--FRPLFVQS--------NVWCSSGAVRPDGVLI 113 (535)
Q Consensus 44 ~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~--w~~~~~~~--------~~~c~~~~~l~dG~l~ 113 (535)
.++.+|+||+.+.. | .+.++|.+|++ |+.-.... .....+..++.+++||
T Consensus 65 Pvv~~~~vy~~~~~-----------g---------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~ 124 (394)
T PRK11138 65 PAVAYNKVYAADRA-----------G---------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVY 124 (394)
T ss_pred cEEECCEEEEECCC-----------C---------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEE
Confidence 34568999987642 1 46788888776 76432110 1122334455578888
Q ss_pred EEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCccCCeeEEE-eCCCCCCeeee-c--cc
Q 009420 114 QTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRRQFNYEFY-PKNGAPNVYSL-P--FL 189 (535)
Q Consensus 114 v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~~-~--~l 189 (535)
+.+.. ..+..+|..+ ++-.|+.-. ...- +.+. ++.+++||+..+.. .+..+ +++....|... . .+
T Consensus 125 v~~~~----g~l~ald~~t-G~~~W~~~~--~~~~-~ssP-~v~~~~v~v~~~~g--~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 125 IGSEK----GQVYALNAED-GEVAWQTKV--AGEA-LSRP-VVSDGLVLVHTSNG--MLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred EEcCC----CEEEEEECCC-CCCcccccC--CCce-ecCC-EEECCEEEEECCCC--EEEEEEccCCCEeeeecCCCCcc
Confidence 75432 4688899862 244686432 1111 2222 33478888754432 23344 43322235421 1 00
Q ss_pred cccCCccccCCCcceEEEeeCCcEEEEec-CeEEEEECCCCe--EEEecCCCCCCCC---CCCCCCCceEeecccccCCC
Q 009420 190 VQTNDPRVENNLYPFVFLNVDGFLFIFAN-NRAILFDYVNNK--VVKQYPAIPGGDP---RSYPSSGSAVLLPLKNLLAP 263 (535)
Q Consensus 190 ~~~~~~~~~~~~yp~~~~~~dG~ifv~gg-~~~~~yDp~t~~--W~~~~p~~p~~~~---R~~~~~g~~v~lpl~~~~~~ 263 (535)
... ...-| ++.+|.+|+..+ .....+|+++++ |..... .|.... |......+-++
T Consensus 194 ~~~------~~~sP---~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~-~~~~~~~~~~~~~~~~sP~v--------- 254 (394)
T PRK11138 194 TLR------GESAP---ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS-QPTGATEIDRLVDVDTTPVV--------- 254 (394)
T ss_pred ccc------CCCCC---EEECCEEEEEcCCCEEEEEEccCChhhheeccc-cCCCccchhcccccCCCcEE---------
Confidence 000 00011 233667776543 356678888754 653221 111000 10000011111
Q ss_pred CCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeeecCCCCceeceeEEccCCeEEEEcCCCCCCCCcc
Q 009420 264 SVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWE 343 (535)
Q Consensus 264 ~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~ 343 (535)
.+++||+++.. ..+.++|+.+....|+.. ....+ . .++.+|+||+.... |
T Consensus 255 -~~~~vy~~~~~-----------------g~l~ald~~tG~~~W~~~-~~~~~---~-~~~~~~~vy~~~~~--g----- 304 (394)
T PRK11138 255 -VGGVVYALAYN-----------------GNLVALDLRSGQIVWKRE-YGSVN---D-FAVDGGRIYLVDQN--D----- 304 (394)
T ss_pred -ECCEEEEEEcC-----------------CeEEEEECCCCCEEEeec-CCCcc---C-cEEECCEEEEEcCC--C-----
Confidence 36788875431 134567777655678765 11111 2 23348899986532 1
Q ss_pred cCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecC
Q 009420 344 LGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGS 394 (535)
Q Consensus 344 ~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG 394 (535)
.+.++|+++. ...|+.-.. ..+..-+.+ +.||+||+...
T Consensus 305 -------~l~ald~~tG-~~~W~~~~~--~~~~~~sp~--v~~g~l~v~~~ 343 (394)
T PRK11138 305 -------RVYALDTRGG-VELWSQSDL--LHRLLTAPV--LYNGYLVVGDS 343 (394)
T ss_pred -------eEEEEECCCC-cEEEccccc--CCCcccCCE--EECCEEEEEeC
Confidence 4678888765 126864211 122222222 34899988654
No 46
>PRK13684 Ycf48-like protein; Provisional
Probab=97.45 E-value=0.19 Score=52.05 Aligned_cols=196 Identities=13% Similarity=0.120 Sum_probs=95.3
Q ss_pred CCCceecCCC-CcccccceEEEecCCcEEEEcCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCc
Q 009420 135 SCDWKEIDGL-GARRWYATDHILPDGRIIIIGGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGF 212 (535)
Q Consensus 135 ~~~W~~~~~m-~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ 212 (535)
-.+|+++..- ..+........+.++.++++|... .+| ....+..|..+..... . ..+ .....++|.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G----~i~~S~DgG~tW~~~~~~~~--g-----~~~-~i~~~~~g~ 185 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVG----AIYRTTDGGKNWEALVEDAA--G-----VVR-NLRRSPDGK 185 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcceeeeccc----eEEEECCCCCCceeCcCCCc--c-----eEE-EEEECCCCe
Confidence 4689987521 222222234455456677766532 234 2222457764321100 0 011 133456776
Q ss_pred EEEEecCeEEEE---ECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCccccccccccc
Q 009420 213 LFIFANNRAILF---DYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFV 289 (535)
Q Consensus 213 ifv~gg~~~~~y---Dp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~ 289 (535)
+++.|.+. .+| |....+|+. .+. +. .+.. -+.+.. .+++++++|... ..
T Consensus 186 ~v~~g~~G-~i~~s~~~gg~tW~~-~~~-~~--~~~l---~~i~~~---------~~g~~~~vg~~G--~~--------- 237 (334)
T PRK13684 186 YVAVSSRG-NFYSTWEPGQTAWTP-HQR-NS--SRRL---QSMGFQ---------PDGNLWMLARGG--QI--------- 237 (334)
T ss_pred EEEEeCCc-eEEEEcCCCCCeEEE-eeC-CC--cccc---eeeeEc---------CCCCEEEEecCC--EE---------
Confidence 66555443 333 344467984 432 21 1221 112221 267888887532 11
Q ss_pred ccCCceEEEEecCCCCCeeeecCCCC---ceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCcee
Q 009420 290 AALNTCARIKITDPTPTWVLETMPQP---RVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFD 366 (535)
Q Consensus 290 pa~~s~e~~d~~~~~~~W~~~~m~~~---R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt 366 (535)
++.-.+...+|+...++.. ....+++..++++++++|... .+|- ..+.|++|+
T Consensus 238 -------~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G----------------~v~~-S~d~G~tW~ 293 (334)
T PRK13684 238 -------RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG----------------TLLV-SKDGGKTWE 293 (334)
T ss_pred -------EEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC----------------eEEE-eCCCCCCCe
Confidence 0100122468997644422 222334556788999887532 1222 245567999
Q ss_pred ecCC-CCCCcccccceeecCCCcEEEecCC
Q 009420 367 LQNP-STIPRMYHSTAVLLRDGRVLVGGSN 395 (535)
Q Consensus 367 ~~~~-~~~~R~yhs~a~LlpDG~V~v~GG~ 395 (535)
.+.. ...+..+.. .+...++++|++|..
T Consensus 294 ~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 294 KDPVGEEVPSNFYK-IVFLDPEKGFVLGQR 322 (334)
T ss_pred ECCcCCCCCcceEE-EEEeCCCceEEECCC
Confidence 8753 333434443 344568889888874
No 47
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.17 E-value=0.26 Score=52.03 Aligned_cols=244 Identities=11% Similarity=0.109 Sum_probs=119.2
Q ss_pred eeEEEECCCCC--EEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCC--cccccceEE
Q 009420 79 HSVEYSVLTNE--FRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLG--ARRWYATDH 154 (535)
Q Consensus 79 ~~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~--~~R~y~s~~ 154 (535)
.+..+|.+|++ |+.-.. .... +.-++.+++||+..+. ..+..+|+.+ ++-.|+.-...+ ..|...+.+
T Consensus 131 ~l~ald~~tG~~~W~~~~~-~~~~--ssP~v~~~~v~v~~~~----g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~sP~ 202 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVA-GEAL--SRPVVSDGLVLVHTSN----GMLQALNESD-GAVKWTVNLDVPSLTLRGESAPA 202 (394)
T ss_pred EEEEEECCCCCCcccccCC-Ccee--cCCEEECCEEEEECCC----CEEEEEEccC-CCEeeeecCCCCcccccCCCCCE
Confidence 57789999886 754321 1122 2234458888875443 4688999972 133587543221 112223333
Q ss_pred EecCCcEEEEcCccCCeeEEE-eCCCCCCeee-eccccccCCccccCCCcceEEEeeCCcEEEEec-CeEEEEECCCCe-
Q 009420 155 ILPDGRIIIIGGRRQFNYEFY-PKNGAPNVYS-LPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN-NRAILFDYVNNK- 230 (535)
Q Consensus 155 ~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~-~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg-~~~~~yDp~t~~- 230 (535)
+. +|.||+..+. +. +-.+ +.+....|.. .......... .........-++.+|+||+.+. ....++|+++++
T Consensus 203 v~-~~~v~~~~~~-g~-v~a~d~~~G~~~W~~~~~~~~~~~~~-~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 203 TA-FGGAIVGGDN-GR-VSAVLMEQGQLIWQQRISQPTGATEI-DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred EE-CCEEEEEcCC-CE-EEEEEccCChhhheeccccCCCccch-hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 33 6777775442 21 2222 3332224531 1000000000 0000000112345889998763 467889998764
Q ss_pred -EEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeee
Q 009420 231 -VVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVL 309 (535)
Q Consensus 231 -W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~ 309 (535)
|.+.. .. .. ..++ .+++||+.... ..+.++|+.+....|+.
T Consensus 279 ~W~~~~---~~--~~-----~~~~-----------~~~~vy~~~~~-----------------g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 279 VWKREY---GS--VN-----DFAV-----------DGGRIYLVDQN-----------------DRVYALDTRGGVELWSQ 320 (394)
T ss_pred EEeecC---CC--cc-----CcEE-----------ECCEEEEEcCC-----------------CeEEEEECCCCcEEEcc
Confidence 65321 11 01 1111 27888886532 23556777654556875
Q ss_pred ecCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceee-cCCCCCCcccccceeecCCCc
Q 009420 310 ETMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDL-QNPSTIPRMYHSTAVLLRDGR 388 (535)
Q Consensus 310 ~~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~-~~~~~~~R~yhs~a~LlpDG~ 388 (535)
..+. .+.....++ .+|+||+... + | .+.+.|+.+.+ ..|+. +.. ...+.+-++ .|++
T Consensus 321 ~~~~-~~~~~sp~v-~~g~l~v~~~-~-G------------~l~~ld~~tG~-~~~~~~~~~---~~~~s~P~~--~~~~ 378 (394)
T PRK11138 321 SDLL-HRLLTAPVL-YNGYLVVGDS-E-G------------YLHWINREDGR-FVAQQKVDS---SGFLSEPVV--ADDK 378 (394)
T ss_pred cccC-CCcccCCEE-ECCEEEEEeC-C-C------------EEEEEECCCCC-EEEEEEcCC---CcceeCCEE--ECCE
Confidence 4322 233333333 4899987432 1 2 35678988751 14553 211 123333333 4899
Q ss_pred EEEecC
Q 009420 389 VLVGGS 394 (535)
Q Consensus 389 V~v~GG 394 (535)
|||..-
T Consensus 379 l~v~t~ 384 (394)
T PRK11138 379 LLIQAR 384 (394)
T ss_pred EEEEeC
Confidence 988854
No 48
>PLN02772 guanylate kinase
Probab=97.14 E-value=0.0013 Score=68.53 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=54.0
Q ss_pred CCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceee---cCCCCCCcccccceeecCCCcEE
Q 009420 314 QPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDL---QNPSTIPRMYHSTAVLLRDGRVL 390 (535)
Q Consensus 314 ~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~---~~~~~~~R~yhs~a~LlpDG~V~ 390 (535)
.+|..++++++ ++|+||+||.+.. ......+.|||+.+. +|+. ....|.+|-.||+ +++-|.|||
T Consensus 23 ~~~~~~tav~i-gdk~yv~GG~~d~-------~~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhSa-~v~~~~ril 90 (398)
T PLN02772 23 KPKNRETSVTI-GDKTYVIGGNHEG-------NTLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYSA-VVLNKDRIL 90 (398)
T ss_pred CCCCcceeEEE-CCEEEEEcccCCC-------ccccceEEEEECCCC---cEecccccCCCCCCCCcceE-EEECCceEE
Confidence 36667776655 9999999997632 112346899999999 9985 4678899999975 456899999
Q ss_pred EecCCC
Q 009420 391 VGGSNP 396 (535)
Q Consensus 391 v~GG~~ 396 (535)
|.++..
T Consensus 91 v~~~~~ 96 (398)
T PLN02772 91 VIKKGS 96 (398)
T ss_pred EEeCCC
Confidence 999653
No 49
>PLN02772 guanylate kinase
Probab=96.94 E-value=0.0023 Score=66.62 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=54.0
Q ss_pred ccccccceecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCCceecC---CCCcccccceEEEecCCcEEEEcCccC
Q 009420 98 NVWCSSGAVRPDGVLIQTGGFNDG---EKKIRSFVPCNDESCDWKEID---GLGARRWYATDHILPDGRIIIIGGRRQ 169 (535)
Q Consensus 98 ~~~c~~~~~l~dG~l~v~GG~~~g---~~~v~~ydp~~~~~~~W~~~~---~m~~~R~y~s~~~L~dG~vyvvGG~~~ 169 (535)
...|.. ++..+.++||+||..+. ...+.+||+. +++|..-. .-|.+|-.|+++++.|++|+|+++-..
T Consensus 24 ~~~~~t-av~igdk~yv~GG~~d~~~~~~~v~i~D~~---t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 24 PKNRET-SVTIGDKTYVIGGNHEGNTLSIGVQILDKI---TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred CCCcce-eEEECCEEEEEcccCCCccccceEEEEECC---CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 334444 45558999999998764 3579999999 99998754 667889999999999999999987543
No 50
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.65 E-value=0.82 Score=45.40 Aligned_cols=250 Identities=16% Similarity=0.245 Sum_probs=128.2
Q ss_pred eEEEECC-CCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecC-CCCcccccceEEEec
Q 009420 80 SVEYSVL-TNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEID-GLGARRWYATDHILP 157 (535)
Q Consensus 80 ~~~yDp~-t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~-~m~~~R~y~s~~~L~ 157 (535)
.-+||.- |||-..+++ +..|--..+..|.|..++-||.+ +.+.+|+..+.+...=..+. .+...+.|-+.+...
T Consensus 79 lIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLd---N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~ 154 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLD---NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL 154 (343)
T ss_pred EEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcC---ceeEEEecccccccccceeeeeecCccceeEEEEEc
Confidence 4577753 455544442 22332233456899999999985 67888987621011111222 455667788888766
Q ss_pred CC-cEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEee-CCcEEEEecC--eEEEEECCCCeEEE
Q 009420 158 DG-RIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNV-DGFLFIFANN--RAILFDYVNNKVVK 233 (535)
Q Consensus 158 dG-~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~-dG~ifv~gg~--~~~~yDp~t~~W~~ 233 (535)
|+ .|+.-.|- .+.-+|.-+.+.+ ...+.-.+.|. -..-+.| +++.|+.|+. .+.+||.+...-.+
T Consensus 155 dD~~ilT~SGD--~TCalWDie~g~~--~~~f~GH~gDV-------~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q 223 (343)
T KOG0286|consen 155 DDNHILTGSGD--MTCALWDIETGQQ--TQVFHGHTGDV-------MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ 223 (343)
T ss_pred CCCceEecCCC--ceEEEEEcccceE--EEEecCCcccE-------EEEecCCCCCCeEEecccccceeeeeccCcceeE
Confidence 54 44443332 3444442211111 11111111110 0123455 8999999984 57788988775443
Q ss_pred ecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCC--CCeeeec
Q 009420 234 QYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPT--PTWVLET 311 (535)
Q Consensus 234 ~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~--~~W~~~~ 311 (535)
.+ ++...-. .+....| +|.-++.|-.+ .+|-.||+.... ..++..+
T Consensus 224 tF---~ghesDI----Nsv~ffP---------~G~afatGSDD----------------~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 224 TF---EGHESDI----NSVRFFP---------SGDAFATGSDD----------------ATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred ee---ccccccc----ceEEEcc---------CCCeeeecCCC----------------ceeEEEeecCCcEEeeeccCc
Confidence 33 3321111 1222333 44555554322 346677776421 1122223
Q ss_pred CCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEE
Q 009420 312 MPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLV 391 (535)
Q Consensus 312 m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v 391 (535)
...+-.... . -.-|+++..|..+ +++++||.-+. ++-..+. -..-|. |+.-+.|||.-+.
T Consensus 272 ~~~gitSv~-F-S~SGRlLfagy~d-------------~~c~vWDtlk~--e~vg~L~-GHeNRv--Scl~~s~DG~av~ 331 (343)
T KOG0286|consen 272 IICGITSVA-F-SKSGRLLFAGYDD-------------FTCNVWDTLKG--ERVGVLA-GHENRV--SCLGVSPDGMAVA 331 (343)
T ss_pred ccCCceeEE-E-cccccEEEeeecC-------------CceeEeecccc--ceEEEee-ccCCee--EEEEECCCCcEEE
Confidence 333322222 1 2369998887533 25688987665 1222332 233343 5666789999999
Q ss_pred ecCCC
Q 009420 392 GGSNP 396 (535)
Q Consensus 392 ~GG~~ 396 (535)
.|+-+
T Consensus 332 TgSWD 336 (343)
T KOG0286|consen 332 TGSWD 336 (343)
T ss_pred ecchh
Confidence 98853
No 51
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.65 E-value=0.97 Score=46.25 Aligned_cols=139 Identities=11% Similarity=0.012 Sum_probs=68.9
Q ss_pred eeEEEECCC-CCEEECcccc-ccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEe
Q 009420 79 HSVEYSVLT-NEFRPLFVQS-NVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHIL 156 (535)
Q Consensus 79 ~~~~yDp~t-~~w~~~~~~~-~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L 156 (535)
.+.+||..+ ++++.+.... .......++-+||+.+.+|+.. ...+..|+... ..+++.....+.+......+.-
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~--~g~l~~~~~~~~~~~p~~i~~~ 88 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIAD--DGALTFAAESPLPGSPTHISTD 88 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECC--CCceEEeeeecCCCCceEEEEC
Confidence 467888764 5666554322 1112223445688866555443 25677777651 3456544433222222245556
Q ss_pred cCCcEEEEcCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcceEE-EeeCCcEEEEe---cCeEEEEECCCC
Q 009420 157 PDGRIIIIGGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVF-LNVDGFLFIFA---NNRAILFDYVNN 229 (535)
Q Consensus 157 ~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~-~~~dG~ifv~g---g~~~~~yDp~t~ 229 (535)
+||+.+.+.......+-+| ..++.........+ +....|+.+ +.|||+.+++. .+.+.+||.+++
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 6887666555444455556 32211000011100 011234543 56688655443 367899998764
No 52
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.46 E-value=0.7 Score=47.93 Aligned_cols=264 Identities=15% Similarity=0.199 Sum_probs=125.1
Q ss_pred eeEEEECCCCCEEECcccccccccc-ceecC-CCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCC-cccccceEEE
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSS-GAVRP-DGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLG-ARRWYATDHI 155 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~-~~~l~-dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~-~~R~y~s~~~ 155 (535)
.+..||.++++++.+......-.+. .++-+ +..||++.-.......+..|+..++ +.+.+.+...+ .+..-...+.
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNSVPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-cceeEEeeeeccCCCCcEEEEE
Confidence 4567788999998876422111112 22223 4567777543212345555554411 35676666544 3443334455
Q ss_pred ecCCcEEEEcCccCCeeEEEeCCCCCCeeee-cccc----ccCCccccCCCcceE-EEeeCCc-EEEE--ecCeEEEEEC
Q 009420 156 LPDGRIIIIGGRRQFNYEFYPKNGAPNVYSL-PFLV----QTNDPRVENNLYPFV-FLNVDGF-LFIF--ANNRAILFDY 226 (535)
Q Consensus 156 L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~-~~l~----~~~~~~~~~~~yp~~-~~~~dG~-ifv~--gg~~~~~yDp 226 (535)
-+||+.+++.-....++.+|+......-... .... .... .....-+||. ...|||+ +|+. |.+.+.+|+.
T Consensus 95 ~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~-~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~ 173 (345)
T PF10282_consen 95 DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP-DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI 173 (345)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST-TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc-cccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence 5677777665555556777733321111111 0100 0000 0012345665 4456887 4443 4577888888
Q ss_pred CCCe--EEEecC--CCC-CCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEec
Q 009420 227 VNNK--VVKQYP--AIP-GGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKIT 301 (535)
Q Consensus 227 ~t~~--W~~~~p--~~p-~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~ 301 (535)
..+. ... .. .+| +.-+|. .++-| ....+|++.-. .+++..|+..
T Consensus 174 ~~~~~~l~~-~~~~~~~~G~GPRh------~~f~p--------dg~~~Yv~~e~----------------s~~v~v~~~~ 222 (345)
T PF10282_consen 174 DDDTGKLTP-VDSIKVPPGSGPRH------LAFSP--------DGKYAYVVNEL----------------SNTVSVFDYD 222 (345)
T ss_dssp -TTS-TEEE-EEEEECSTTSSEEE------EEE-T--------TSSEEEEEETT----------------TTEEEEEEEE
T ss_pred eCCCceEEE-eeccccccCCCCcE------EEEcC--------CcCEEEEecCC----------------CCcEEEEeec
Confidence 7655 331 11 112 211332 23322 24567776543 2344555554
Q ss_pred CCCCCeeee----cCCC---Cc-eeceeEEccCCe-EEEEcCCCCCCCCcccCCCCccccEEEeC--CCCCCCceeecCC
Q 009420 302 DPTPTWVLE----TMPQ---PR-VMGDMTLLPNGN-VLLINGAGKGTAGWELGRDPVLAPVVYRP--DNIPGSRFDLQNP 370 (535)
Q Consensus 302 ~~~~~W~~~----~m~~---~R-~~~~~v~lpdG~-I~vvGG~~~g~~g~~~~~~~~~~~e~YDP--~t~~g~~Wt~~~~ 370 (535)
....+++.. .++. .. .-+...+-|||+ |||.+-.. .++-+|+- ++. +.+.+..
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-------------~sI~vf~~d~~~g---~l~~~~~ 286 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-------------NSISVFDLDPATG---TLTLVQT 286 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-------------TEEEEEEECTTTT---TEEEEEE
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC-------------CEEEEEEEecCCC---ceEEEEE
Confidence 323445432 2322 11 233445667886 56655322 14667765 444 4444322
Q ss_pred ----CCCCcccccceeecCCCcEEEecCC
Q 009420 371 ----STIPRMYHSTAVLLRDGRVLVGGSN 395 (535)
Q Consensus 371 ----~~~~R~yhs~a~LlpDG~V~v~GG~ 395 (535)
...||. ..+.+||+.+++++.
T Consensus 287 ~~~~G~~Pr~----~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 287 VPTGGKFPRH----FAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEESSSSEEE----EEE-TTSSEEEEEET
T ss_pred EeCCCCCccE----EEEeCCCCEEEEEec
Confidence 233662 335789997777664
No 53
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.42 E-value=1.1 Score=44.31 Aligned_cols=225 Identities=19% Similarity=0.193 Sum_probs=127.0
Q ss_pred eEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecC---CCCcccccceEEEe
Q 009420 80 SVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEID---GLGARRWYATDHIL 156 (535)
Q Consensus 80 ~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~---~m~~~R~y~s~~~L 156 (535)
....||+|++....+...-..-++.++-+||...+.-+ ...|.++||+ +..-++.+ +|...- -.+++.-
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~----~~aI~R~dpk---t~evt~f~lp~~~a~~n-let~vfD 156 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT----GLAIGRLDPK---TLEVTRFPLPLEHADAN-LETAVFD 156 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC----cceeEEecCc---ccceEEeecccccCCCc-ccceeeC
Confidence 56789999999988865544444555667887777632 2378999998 55444433 333222 1244555
Q ss_pred cCCcEEEEcCccC--------CeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEE--ecCeEEEEEC
Q 009420 157 PDGRIIIIGGRRQ--------FNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIF--ANNRAILFDY 226 (535)
Q Consensus 157 ~dG~vyvvGG~~~--------~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~--gg~~~~~yDp 226 (535)
.+|.++.+|-..- ..+++||.-. . ..-| -+++.|||.+|+. .++-..+.||
T Consensus 157 ~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G-------~gpy-Gi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 157 PWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------G-------GGPY-GICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred CCccEEEeeccccceecCcccCceeeeccCC-----------C-------CCCc-ceEECCCCcEEEEeccccceEEccc
Confidence 5688888874321 1344552210 0 0001 2578899999987 6777778898
Q ss_pred CCCeEEEecCCCCCC---CCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCC
Q 009420 227 VNNKVVKQYPAIPGG---DPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDP 303 (535)
Q Consensus 227 ~t~~W~~~~p~~p~~---~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~ 303 (535)
.+..-+ .+| .|.. ..|.- .+. --+++.+. + -...++.+|||..
T Consensus 218 ~~~~ae-v~p-~P~~~~~gsRri---wsd------------pig~~wit---t-------------wg~g~l~rfdPs~- 263 (353)
T COG4257 218 FAGHAE-VVP-QPNALKAGSRRI---WSD------------PIGRAWIT---T-------------WGTGSLHRFDPSV- 263 (353)
T ss_pred ccCCcc-eec-CCCccccccccc---ccC------------ccCcEEEe---c-------------cCCceeeEeCccc-
Confidence 876533 232 2321 01210 111 13556554 1 1134678888875
Q ss_pred CCCeeeecCC--CCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccce
Q 009420 304 TPTWVLETMP--QPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTA 381 (535)
Q Consensus 304 ~~~W~~~~m~--~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a 381 (535)
.+|..=+|| .+|-+.--| =-.|+|+..- .. ...+..|||++. +++.+ +++|-..+.
T Consensus 264 -~sW~eypLPgs~arpys~rV-D~~grVW~se-a~------------agai~rfdpeta---~ftv~---p~pr~n~gn- 321 (353)
T COG4257 264 -TSWIEYPLPGSKARPYSMRV-DRHGRVWLSE-AD------------AGAIGRFDPETA---RFTVL---PIPRPNSGN- 321 (353)
T ss_pred -ccceeeeCCCCCCCcceeee-ccCCcEEeec-cc------------cCceeecCcccc---eEEEe---cCCCCCCCc-
Confidence 679875444 556554322 2246776521 11 125689999999 99876 345553333
Q ss_pred eecCCCc
Q 009420 382 VLLRDGR 388 (535)
Q Consensus 382 ~LlpDG~ 388 (535)
+..|||
T Consensus 322 -~ql~gr 327 (353)
T COG4257 322 -IQLDGR 327 (353)
T ss_pred -eeccCC
Confidence 333655
No 54
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.38 E-value=1.2 Score=44.01 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=66.7
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcE-EEEcCCCCCCCeEEEEcCCCCCCCCcee-cCCCCcccccceEEEe
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVL-IQTGGFNDGEKKIRSFVPCNDESCDWKE-IDGLGARRWYATDHIL 156 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l-~v~GG~~~g~~~v~~ydp~~~~~~~W~~-~~~m~~~R~y~s~~~L 156 (535)
.+.+||+.+++....-..... ..+.++.+||+. |+.++. ...+.+||.. +.+... ++.-... ...+..
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~---~~~v~~~d~~---~~~~~~~~~~~~~~---~~~~~~ 81 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASD---SDTIQVIDLA---TGEVIGTLPSGPDP---ELFALH 81 (300)
T ss_pred EEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECC---CCeEEEEECC---CCcEEEeccCCCCc---cEEEEC
Confidence 467888888764332221111 223445678874 566654 2578999987 555432 2211112 234555
Q ss_pred cCCcEEEEcCccCCeeEEE-eCCCCCCee-eeccccccCCccccCCCcce-EEEeeCCcEEEEecC---eEEEEECCCCe
Q 009420 157 PDGRIIIIGGRRQFNYEFY-PKNGAPNVY-SLPFLVQTNDPRVENNLYPF-VFLNVDGFLFIFANN---RAILFDYVNNK 230 (535)
Q Consensus 157 ~dG~vyvvGG~~~~~~E~y-P~~~~~~w~-~~~~l~~~~~~~~~~~~yp~-~~~~~dG~ifv~gg~---~~~~yDp~t~~ 230 (535)
+||+.+++.+.....+.+| ..+. +.. .++. ...+. ....+||++++.+.. ....||..+.+
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~--~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETR--KVLAEIPV-----------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCC--eEEeEeeC-----------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 6777444443333355566 3321 111 1110 00122 345679998887653 24567887765
Q ss_pred EE
Q 009420 231 VV 232 (535)
Q Consensus 231 W~ 232 (535)
-.
T Consensus 149 ~~ 150 (300)
T TIGR03866 149 IV 150 (300)
T ss_pred EE
Confidence 43
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.29 E-value=0.46 Score=46.14 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=83.3
Q ss_pred ceeEEEECCCCCEEECcccc--ccccccceecCCCcEEEEcCCCCC-C-CeEEEEcCCCCCCCCcee-cCCCCcc----c
Q 009420 78 AHSVEYSVLTNEFRPLFVQS--NVWCSSGAVRPDGVLIQTGGFNDG-E-KKIRSFVPCNDESCDWKE-IDGLGAR----R 148 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~--~~~c~~~~~l~dG~l~v~GG~~~g-~-~~v~~ydp~~~~~~~W~~-~~~m~~~----R 148 (535)
..+++|+..+++|+.+.... ...... .+..||.||-+.-...+ . ..+-.||.. +.+|.+ ++ ++.. .
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~---~E~f~~~i~-~P~~~~~~~ 144 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVS---SERFKEFIP-LPCGNSDSV 144 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcc---cceEeeeee-cCccccccc
Confidence 35799999999999987322 111222 44569998877643221 1 268899999 888985 43 3322 2
Q ss_pred ccceEEEecCCcEEEEcCccC-CeeEEE-eCC-CCCCeee---eccccccCCccccCCCcceEEEeeCCcEEEEecC---
Q 009420 149 WYATDHILPDGRIIIIGGRRQ-FNYEFY-PKN-GAPNVYS---LPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANN--- 219 (535)
Q Consensus 149 ~y~s~~~L~dG~vyvvGG~~~-~~~E~y-P~~-~~~~w~~---~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~--- 219 (535)
.+...+.+ +|++.++..... ...|+| -+. ....|.. ++.. ...+ .....+ ..++..+|+|.+....
T Consensus 145 ~~~~L~~~-~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~-~~~~--~~~~~~-~~~~~~~g~I~~~~~~~~~ 219 (230)
T TIGR01640 145 DYLSLINY-KGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIP-PLPD--LVDDNF-LSGFTDKGEIVLCCEDENP 219 (230)
T ss_pred cceEEEEE-CCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCc-chhh--hhhhee-EeEEeeCCEEEEEeCCCCc
Confidence 24456677 699988876432 347888 332 2345862 2210 0000 001112 2456778998886653
Q ss_pred e-EEEEECCCC
Q 009420 220 R-AILFDYVNN 229 (535)
Q Consensus 220 ~-~~~yDp~t~ 229 (535)
. ..+||+++|
T Consensus 220 ~~~~~y~~~~~ 230 (230)
T TIGR01640 220 FYIFYYNVGEN 230 (230)
T ss_pred eEEEEEeccCC
Confidence 2 778998875
No 56
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.94 E-value=1.9 Score=42.43 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=67.9
Q ss_pred eeEEEECCCCCEEE-CccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 79 HSVEYSVLTNEFRP-LFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 79 ~~~~yDp~t~~w~~-~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
.+.+||..+++... +...... ...++.++|+.+.+.+..+ +.+.+||.. +.+ .+..+.....-.+.+.-+
T Consensus 54 ~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~--~~l~~~d~~---~~~--~~~~~~~~~~~~~~~~~~ 124 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLPSGPDP--ELFALHPNGKILYIANEDD--NLVTVIDIE---TRK--VLAEIPVGVEPEGMAVSP 124 (300)
T ss_pred eEEEEECCCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCCC--CeEEEEECC---CCe--EEeEeeCCCCcceEEECC
Confidence 47789999887654 2221121 2234556777544433222 478999987 432 122222122123455667
Q ss_pred CCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcc-eEEEeeCCcEEEEe---cCeEEEEECCCCeEE
Q 009420 158 DGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYP-FVFLNVDGFLFIFA---NNRAILFDYVNNKVV 232 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp-~~~~~~dG~ifv~g---g~~~~~yDp~t~~W~ 232 (535)
||++++++..+......|...........+ .. ..| .....+||+.++++ +..+.+||.++.+..
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~---------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VD---------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cC---------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 899988876654333334221100000111 00 012 23445788765444 346789999887654
No 57
>PF13854 Kelch_5: Kelch motif
Probab=95.79 E-value=0.02 Score=39.95 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCC
Q 009420 312 MPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDN 359 (535)
Q Consensus 312 m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t 359 (535)
+|.+|..|+++++ +++|||+||... . ......++.+||..+
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~-~-----~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSG-N-----NNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccC-C-----CCCEECcEEEEECCC
Confidence 4789999998765 899999999872 1 112234677887654
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.67 E-value=2.1 Score=40.81 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=73.9
Q ss_pred eeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeE
Q 009420 46 LNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKI 125 (535)
Q Consensus 46 ~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v 125 (535)
-+++++++.++.+ | .+.+||..+++-......+..........++++.+++++.. ..+
T Consensus 18 ~~~~~~l~~~~~~----------g---------~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i 75 (289)
T cd00200 18 SPDGKLLATGSGD----------G---------TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD---KTI 75 (289)
T ss_pred cCCCCEEEEeecC----------c---------EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---CeE
Confidence 3577887777643 2 46788887765322211122222233455688788888763 578
Q ss_pred EEEcCCCCCCCCceecCCCCccc-ccceEEEecCCcEEEEcCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcc
Q 009420 126 RSFVPCNDESCDWKEIDGLGARR-WYATDHILPDGRIIIIGGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYP 203 (535)
Q Consensus 126 ~~ydp~~~~~~~W~~~~~m~~~R-~y~s~~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp 203 (535)
.+||.. ..+.. ..+.... .-.+....+++++++.++.++ .+.+| ..+. .....+. ... ..--
T Consensus 76 ~i~~~~---~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~-~~~~~~~---~~~------~~i~ 139 (289)
T cd00200 76 RLWDLE---TGECV--RTLTGHTSYVSSVAFSPDGRILSSSSRDK-TIKVWDVETG-KCLTTLR---GHT------DWVN 139 (289)
T ss_pred EEEEcC---cccce--EEEeccCCcEEEEEEcCCCCEEEEecCCC-eEEEEECCCc-EEEEEec---cCC------CcEE
Confidence 899987 43211 1111111 122344455667777777443 45555 3321 0111111 000 0011
Q ss_pred eEEEeeCCcEEEEec--CeEEEEECCCCe
Q 009420 204 FVFLNVDGFLFIFAN--NRAILFDYVNNK 230 (535)
Q Consensus 204 ~~~~~~dG~ifv~gg--~~~~~yDp~t~~ 230 (535)
.....+++++++.+. ..+.+||..+.+
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 233445677777664 567889987654
No 59
>PF13854 Kelch_5: Kelch motif
Probab=95.45 E-value=0.041 Score=38.42 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=29.6
Q ss_pred CCcceeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCC
Q 009420 36 IGISSMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLT 87 (535)
Q Consensus 36 ~~~~~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t 87 (535)
|..|..|++++.+++||++||.+. ..+. ..+.+.+||..+
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~-~~~~-----------~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG-NNNS-----------YSNDLYVLDLPS 41 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC-CCCC-----------EECcEEEEECCC
Confidence 567889999999999999999762 1111 235678888876
No 60
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.22 E-value=4.2 Score=41.53 Aligned_cols=92 Identities=10% Similarity=0.085 Sum_probs=48.0
Q ss_pred eEEEECC-CCCEEECcccc--ccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEe
Q 009420 80 SVEYSVL-TNEFRPLFVQS--NVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHIL 156 (535)
Q Consensus 80 ~~~yDp~-t~~w~~~~~~~--~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L 156 (535)
+..|+.. +++++.+.... ..-| ..++.+||+.+.+..+. ...+.+||...+ .........+.....-+.++.-
T Consensus 59 i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 134 (330)
T PRK11028 59 VLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN--ANCVSVSPLDKD-GIPVAPIQIIEGLEGCHSANID 134 (330)
T ss_pred EEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC--CCeEEEEEECCC-CCCCCceeeccCCCcccEeEeC
Confidence 5567665 55676554221 1222 23455788866665543 356788887511 1111122222222233455566
Q ss_pred cCCcEEEEcCccCCeeEEE
Q 009420 157 PDGRIIIIGGRRQFNYEFY 175 (535)
Q Consensus 157 ~dG~vyvvGG~~~~~~E~y 175 (535)
+||+.+.+.......+.+|
T Consensus 135 p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCCCEEEEeeCCCCEEEEE
Confidence 7887666666665677777
No 61
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=95.19 E-value=0.023 Score=59.78 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=85.5
Q ss_pred ccCCCceEEccc----------CCCcceeEEEEeeCC--eEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCE
Q 009420 23 DAAGGGWQLLQK----------SIGISSMHMQLLNND--RVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEF 90 (535)
Q Consensus 23 ~~~~g~W~~l~~----------~~~~~~~~~~~~~~g--kv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w 90 (535)
++-.-+|..++. -+..|..|-.+..++ .||++||.+ |... .+....|....+.|
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~-------------l~DFW~Y~v~e~~W 300 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQD-------------LADFWAYSVKENQW 300 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchh-------------HHHHHhhcCCccee
Confidence 344467876543 235677887776544 999999987 4322 24567899999999
Q ss_pred EECcc----ccccccccceec-CCCcEEEEcCCCC--------CCCeEEEEcCCCCCCCCceecCCC------Ccccccc
Q 009420 91 RPLFV----QSNVWCSSGAVR-PDGVLIQTGGFND--------GEKKIRSFVPCNDESCDWKEIDGL------GARRWYA 151 (535)
Q Consensus 91 ~~~~~----~~~~~c~~~~~l-~dG~l~v~GG~~~--------g~~~v~~ydp~~~~~~~W~~~~~m------~~~R~y~ 151 (535)
+.... +-.+-|+-.+.- ...++|..|-+.+ +..+++.||-. ++.|+-+.-= +..-.-|
T Consensus 301 ~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~---~~~W~~ls~dt~~dGGP~~vfDH 377 (723)
T KOG2437|consen 301 TCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID---TNTWMLLSEDTAADGGPKLVFDH 377 (723)
T ss_pred EEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecC---CceeEEecccccccCCcceeecc
Confidence 98763 336677754322 2348999997642 34679999998 8999876521 1223446
Q ss_pred eEEEecCCc--EEEEcCcc
Q 009420 152 TDHILPDGR--IIIIGGRR 168 (535)
Q Consensus 152 s~~~L~dG~--vyvvGG~~ 168 (535)
.+++.. .| |||.||+.
T Consensus 378 qM~Vd~-~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 378 QMCVDS-EKHMIYVFGGRI 395 (723)
T ss_pred eeeEec-CcceEEEecCee
Confidence 666663 45 99999974
No 62
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.15 E-value=3.8 Score=40.68 Aligned_cols=141 Identities=17% Similarity=0.136 Sum_probs=80.0
Q ss_pred eeEEEECCCCCEEECcccc---ccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEE
Q 009420 79 HSVEYSVLTNEFRPLFVQS---NVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHI 155 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~---~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~ 155 (535)
-+..+||+|...+..+... +..-...++-.+|+|..+|-..- --+.||. ++.-+..+. +.+-.-..+|+
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~----yGrLdPa---~~~i~vfpa-PqG~gpyGi~a 196 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA----YGRLDPA---RNVISVFPA-PQGGGPYGICA 196 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccc----ceecCcc---cCceeeecc-CCCCCCcceEE
Confidence 3578999999988766432 23334556777899999884311 1145665 333222221 11222236778
Q ss_pred ecCCcEEEEcCccCC---------eeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEE--ecCeEEEE
Q 009420 156 LPDGRIIIIGGRRQF---------NYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIF--ANNRAILF 224 (535)
Q Consensus 156 L~dG~vyvvGG~~~~---------~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~--gg~~~~~y 224 (535)
-+||.|+...=..+. ..|++|.-+ -+.+ + -...+.-+-|++++. |+.++..|
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~aev~p~P~--------~~~~--g-------sRriwsdpig~~wittwg~g~l~rf 259 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN--------ALKA--G-------SRRIWSDPIGRAWITTWGTGSLHRF 259 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCcceecCCC--------cccc--c-------ccccccCccCcEEEeccCCceeeEe
Confidence 889999997322111 223432211 0000 0 113455667888875 56678899
Q ss_pred ECCCCeEEEecCCCCCCCCCCC
Q 009420 225 DYVNNKVVKQYPAIPGGDPRSY 246 (535)
Q Consensus 225 Dp~t~~W~~~~p~~p~~~~R~~ 246 (535)
||.+.+|. ..| +|...+|-|
T Consensus 260 dPs~~sW~-eyp-LPgs~arpy 279 (353)
T COG4257 260 DPSVTSWI-EYP-LPGSKARPY 279 (353)
T ss_pred Ccccccce-eee-CCCCCCCcc
Confidence 99999998 353 677556655
No 63
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.13 E-value=3.5 Score=40.22 Aligned_cols=218 Identities=16% Similarity=0.168 Sum_probs=106.1
Q ss_pred ceeEEEECCCCCEEECcc--ccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccce---
Q 009420 78 AHSVEYSVLTNEFRPLFV--QSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYAT--- 152 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~--~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s--- 152 (535)
.++.+||..+++=.|+.. .+..--.+..+-.||+++..||.+ ..++++|-. . +...|-|..
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD---gt~kIWdlR---~--------~~~qR~~~~~sp 126 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED---GTVKIWDLR---S--------LSCQRNYQHNSP 126 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC---ceEEEEecc---C--------cccchhccCCCC
Confidence 468999999887555542 122222234456799999999974 467888876 2 222232211
Q ss_pred --EEEecCCcEEEEcCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEE--ECC
Q 009420 153 --DHILPDGRIIIIGGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILF--DYV 227 (535)
Q Consensus 153 --~~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~y--Dp~ 227 (535)
.+++.-++-=.+.|.....+.+| -.++ .....++... + -.-..+.+.+||++.+.+++...+| +.-
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~--~c~~~liPe~--~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGEN--SCTHELIPED--D-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCC--ccccccCCCC--C-----cceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 12222223223334333445666 2221 1111111100 0 0112467889999999998754444 433
Q ss_pred CCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCe
Q 009420 228 NNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTW 307 (535)
Q Consensus 228 t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W 307 (535)
+++-...+-|+-.-..+.-+ +...+|. -++|.++.-+.+. +|.+++.++ -.
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~--il~C~lS--------Pd~k~lat~ssdk----------------tv~iwn~~~---~~ 248 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGH--ILRCLLS--------PDVKYLATCSSDK----------------TVKIWNTDD---FF 248 (311)
T ss_pred CCCccccceEhhheecccce--EEEEEEC--------CCCcEEEeecCCc----------------eEEEEecCC---ce
Confidence 33211112111110011111 2222222 2778777776542 233333321 11
Q ss_pred eee-cC-CCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCC
Q 009420 308 VLE-TM-PQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNI 360 (535)
Q Consensus 308 ~~~-~m-~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~ 360 (535)
..+ .+ ...|..-+.+--.||+-+|+|+.+ . .+.+||++++
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd-~------------~~rlW~~~~~ 290 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSD-H------------TARLWDLSAG 290 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCC-C------------ceeecccccC
Confidence 112 22 123544444555699988888755 2 4678998887
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.67 E-value=6.5 Score=40.98 Aligned_cols=247 Identities=11% Similarity=0.102 Sum_probs=114.1
Q ss_pred ceeEEEECCCCC--EEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCC--cccccceE
Q 009420 78 AHSVEYSVLTNE--FRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLG--ARRWYATD 153 (535)
Q Consensus 78 ~~~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~--~~R~y~s~ 153 (535)
..+..+|+++++ |+.-.. .... +..++.++++|+..+. ..+..+|+.+ +.-.|+.-..-+ ..+...+.
T Consensus 115 g~l~ald~~tG~~~W~~~~~-~~~~--~~p~v~~~~v~v~~~~----g~l~a~d~~t-G~~~W~~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLS-SEVL--SPPLVANGLVVVRTND----GRLTALDAAT-GERLWTYSRVTPALTLRGSASP 186 (377)
T ss_pred CEEEEEECCCCcEeeeeccC-ceee--cCCEEECCEEEEECCC----CeEEEEEcCC-CceeeEEccCCCceeecCCCCC
Confidence 356788988876 654321 1111 2223447777775432 4588899872 133586432211 11223333
Q ss_pred EEecCCcEEEEcCccCCeeEEE-eCCCCCCeee-eccccccCCccccCCCcceEEEeeCCcEEEEec-CeEEEEECCCCe
Q 009420 154 HILPDGRIIIIGGRRQFNYEFY-PKNGAPNVYS-LPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN-NRAILFDYVNNK 230 (535)
Q Consensus 154 ~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~-~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg-~~~~~yDp~t~~ 230 (535)
+.. ++.+|+ |..++ .+-.+ +++....|.. ........+. .........-++.+++||+... ....+||+++++
T Consensus 187 ~~~-~~~v~~-~~~~g-~v~ald~~tG~~~W~~~~~~~~g~~~~-~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 187 VIA-DGGVLV-GFAGG-KLVALDLQTGQPLWEQRVALPKGRTEL-ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred EEE-CCEEEE-ECCCC-EEEEEEccCCCEeeeeccccCCCCCch-hhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 443 665554 44332 22222 3332223431 1100000000 0000000112345788888753 467889998764
Q ss_pred --EEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCee
Q 009420 231 --VVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWV 308 (535)
Q Consensus 231 --W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~ 308 (535)
|... .+ ... ..+ + .+++||+.... ..+.++|..+....|+
T Consensus 263 ~~W~~~---~~---~~~----~p~-~----------~~~~vyv~~~~-----------------G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 263 VLWKRD---AS---SYQ----GPA-V----------DDNRLYVTDAD-----------------GVVVALDRRSGSELWK 304 (377)
T ss_pred EEEeec---cC---Ccc----Cce-E----------eCCEEEEECCC-----------------CeEEEEECCCCcEEEc
Confidence 5421 11 111 112 2 37888886421 2356677765455787
Q ss_pred eecCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCc
Q 009420 309 LETMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGR 388 (535)
Q Consensus 309 ~~~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~ 388 (535)
...+.. +.....+ +.+++||+.. .+ | .+.++|+.+.+ ..|+.-. .... ..+. -+..|++
T Consensus 305 ~~~~~~-~~~ssp~-i~g~~l~~~~-~~-G------------~l~~~d~~tG~-~~~~~~~--~~~~-~~~s-p~~~~~~ 363 (377)
T TIGR03300 305 NDELKY-RQLTAPA-VVGGYLVVGD-FE-G------------YLHWLSREDGS-FVARLKT--DGSG-IASP-PVVVGDG 363 (377)
T ss_pred cccccC-CccccCE-EECCEEEEEe-CC-C------------EEEEEECCCCC-EEEEEEc--CCCc-cccC-CEEECCE
Confidence 654332 2222223 3377777642 22 2 35678887651 1343211 1111 1222 2335889
Q ss_pred EEEecCC
Q 009420 389 VLVGGSN 395 (535)
Q Consensus 389 V~v~GG~ 395 (535)
+|+.+.+
T Consensus 364 l~v~~~d 370 (377)
T TIGR03300 364 LLVQTRD 370 (377)
T ss_pred EEEEeCC
Confidence 8887764
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.48 E-value=7.2 Score=40.66 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=29.8
Q ss_pred eeEEEECCCCC--EEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCcee
Q 009420 79 HSVEYSVLTNE--FRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKE 140 (535)
Q Consensus 79 ~~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~ 140 (535)
.+.+||+++++ |+.-. ...... +.++.++++|+.... ..+..+|+.+ +.-.|+.
T Consensus 76 ~v~a~d~~tG~~~W~~~~--~~~~~~-~p~v~~~~v~v~~~~----g~l~ald~~t-G~~~W~~ 131 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDL--DERLSG-GVGADGGLVFVGTEK----GEVIALDAED-GKELWRA 131 (377)
T ss_pred eEEEEEccCCcEeeeecC--CCCccc-ceEEcCCEEEEEcCC----CEEEEEECCC-CcEeeee
Confidence 47889998886 65332 122222 234446666654332 4688899862 1335753
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.45 E-value=3.7 Score=43.43 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=30.7
Q ss_pred eEEEECCCCCEEECccc--c-ccccccceecCCCcEEEEcCCCCCCCeEEEEcCC
Q 009420 80 SVEYSVLTNEFRPLFVQ--S-NVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 80 ~~~yDp~t~~w~~~~~~--~-~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 131 (535)
+..||..+... +.... + -.+|... .-.++.|++.||++ ..|+.||..
T Consensus 135 ~k~~d~s~a~v-~~~l~~htDYVR~g~~-~~~~~hivvtGsYD---g~vrl~DtR 184 (487)
T KOG0310|consen 135 VKYWDLSTAYV-QAELSGHTDYVRCGDI-SPANDHIVVTGSYD---GKVRLWDTR 184 (487)
T ss_pred EEEEEcCCcEE-EEEecCCcceeEeecc-ccCCCeEEEecCCC---ceEEEEEec
Confidence 56777777664 43321 2 2355433 33478899999995 479999987
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.27 E-value=5.7 Score=38.68 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=54.2
Q ss_pred CCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccceec-CCCcEEEEcCCCCCCCeEE
Q 009420 48 NDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVR-PDGVLIQTGGFNDGEKKIR 126 (535)
Q Consensus 48 ~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l-~dG~l~v~GG~~~g~~~v~ 126 (535)
+|.+|+.+-.. ..+..||+.+++.+...... ..+.++. .+|++|+.... ...
T Consensus 11 ~g~l~~~D~~~-------------------~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~-----~~~ 63 (246)
T PF08450_consen 11 DGRLYWVDIPG-------------------GRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDGRLYVADSG-----GIA 63 (246)
T ss_dssp TTEEEEEETTT-------------------TEEEEEETTTTEEEEEESSS---EEEEEEECTTSEEEEEETT-----CEE
T ss_pred CCEEEEEEcCC-------------------CEEEEEECCCCeEEEEecCC---CceEEEEccCCEEEEEEcC-----ceE
Confidence 78888887422 25788999998876654332 3344444 68999998653 356
Q ss_pred EEcCCCCCCCCceecCCCC-----cccccceEEEecCCcEEEE
Q 009420 127 SFVPCNDESCDWKEIDGLG-----ARRWYATDHILPDGRIIII 164 (535)
Q Consensus 127 ~ydp~~~~~~~W~~~~~m~-----~~R~y~s~~~L~dG~vyvv 164 (535)
++|+. +.+++.+.... ..| -.-.++-++|++|+.
T Consensus 64 ~~d~~---~g~~~~~~~~~~~~~~~~~-~ND~~vd~~G~ly~t 102 (246)
T PF08450_consen 64 VVDPD---TGKVTVLADLPDGGVPFNR-PNDVAVDPDGNLYVT 102 (246)
T ss_dssp EEETT---TTEEEEEEEEETTCSCTEE-EEEEEE-TTS-EEEE
T ss_pred EEecC---CCcEEEEeeccCCCcccCC-CceEEEcCCCCEEEE
Confidence 77998 77887776542 122 224566678888774
No 68
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.19 E-value=1.2 Score=45.32 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=80.7
Q ss_pred CCCceEEcccCCCccee-EEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcccccccccc
Q 009420 25 AGGGWQLLQKSIGISSM-HMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSS 103 (535)
Q Consensus 25 ~~g~W~~l~~~~~~~~~-~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~ 103 (535)
....|+.+.... ...+ ......+|++++++.. | .-...+||-...|++......++-..
T Consensus 132 gG~tW~~~~~~~-~gs~~~~~r~~dG~~vavs~~-----------G--------~~~~s~~~G~~~w~~~~r~~~~riq~ 191 (302)
T PF14870_consen 132 GGKTWQAVVSET-SGSINDITRSSDGRYVAVSSR-----------G--------NFYSSWDPGQTTWQPHNRNSSRRIQS 191 (302)
T ss_dssp TTSSEEEEE-S-----EEEEEE-TTS-EEEEETT-----------S--------SEEEEE-TT-SS-EEEE--SSS-EEE
T ss_pred CCCCeeEcccCC-cceeEeEEECCCCcEEEEECc-----------c--------cEEEEecCCCccceEEccCccceehh
Confidence 345899875433 3333 3334579998888742 2 13457889888999988766666666
Q ss_pred ceecCCCcEEEEcCCCCCCCeEEEEc-CCCCCCCCceecC-CCCcccc-cceEEEecCCcEEEEcCccCCeeEEE-eCCC
Q 009420 104 GAVRPDGVLIQTGGFNDGEKKIRSFV-PCNDESCDWKEID-GLGARRW-YATDHILPDGRIIIIGGRRQFNYEFY-PKNG 179 (535)
Q Consensus 104 ~~~l~dG~l~v~GG~~~g~~~v~~yd-p~~~~~~~W~~~~-~m~~~R~-y~s~~~L~dG~vyvvGG~~~~~~E~y-P~~~ 179 (535)
..+.+|+.|+++. . . ..++.=| +.. ..+|.+.- +.....+ +..++.-.++.++++||... +| ...+
T Consensus 192 ~gf~~~~~lw~~~-~-G--g~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~----l~~S~Dg 261 (302)
T PF14870_consen 192 MGFSPDGNLWMLA-R-G--GQIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT----LLVSTDG 261 (302)
T ss_dssp EEE-TTS-EEEEE-T-T--TEEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----EEEESST
T ss_pred ceecCCCCEEEEe-C-C--cEEEEccCCCC--ccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc----EEEeCCC
Confidence 6677899988775 2 1 1233323 321 55787632 3333333 35667777899999999752 23 3333
Q ss_pred CCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeE
Q 009420 180 APNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRA 221 (535)
Q Consensus 180 ~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~ 221 (535)
+..|...+.... .+.|+|...|. .+.+-|++|.+.+
T Consensus 262 GktW~~~~~~~~-----~~~n~~~i~f~-~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 262 GKTWQKDRVGEN-----VPSNLYRIVFV-NPDKGFVLGQDGV 297 (302)
T ss_dssp TSS-EE-GGGTT-----SSS---EEEEE-ETTEEEEE-STTE
T ss_pred CccceECccccC-----CCCceEEEEEc-CCCceEEECCCcE
Confidence 557875543222 34577765555 5689999998654
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.60 E-value=9.1 Score=40.62 Aligned_cols=245 Identities=18% Similarity=0.205 Sum_probs=120.5
Q ss_pred CceeEEEECCCCCEEE-CccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCc--ccccceE
Q 009420 77 TAHSVEYSVLTNEFRP-LFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGA--RRWYATD 153 (535)
Q Consensus 77 ~~~~~~yDp~t~~w~~-~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~--~R~y~s~ 153 (535)
...+.+|+..+..-.. +....+.-|+. .+-.||+|+++|+.. ..|.+||-. +. ..+-.|.. .+-..+-
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~s~-~fR~DG~LlaaGD~s---G~V~vfD~k---~r--~iLR~~~ah~apv~~~~ 117 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVYSV-DFRSDGRLLAAGDES---GHVKVFDMK---SR--VILRQLYAHQAPVHVTK 117 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccceeEE-EeecCCeEEEccCCc---CcEEEeccc---cH--HHHHHHhhccCceeEEE
Confidence 3567889988765544 23334444543 345699999999763 468999944 21 11111211 0100000
Q ss_pred EEecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEE-Ee-eCCcEEEEecC--eEEEEECCCC
Q 009420 154 HILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVF-LN-VDGFLFIFANN--RAILFDYVNN 229 (535)
Q Consensus 154 ~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~-~~-~dG~ifv~gg~--~~~~yDp~t~ 229 (535)
-.-.|+.+++.|+-+. ...+|.... .-.... +....| |-++. .. .+++|++.|+. .+.+||.+..
T Consensus 118 f~~~d~t~l~s~sDd~-v~k~~d~s~--a~v~~~-l~~htD-------YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDK-VVKYWDLST--AYVQAE-LSGHTD-------YVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred ecccCCeEEEecCCCc-eEEEEEcCC--cEEEEE-ecCCcc-------eeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 0113788888776543 333442221 111111 111112 33332 22 36789999985 4778998876
Q ss_pred -eEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCee
Q 009420 230 -KVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWV 308 (535)
Q Consensus 230 -~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~ 308 (535)
.|...+ ..+ .| .-.+++|. -...|..+||.. +-.+|+.... + .
T Consensus 187 ~~~v~el---nhg----~p---Ve~vl~lp------sgs~iasAgGn~------------------vkVWDl~~G~-q-l 230 (487)
T KOG0310|consen 187 TSRVVEL---NHG----CP---VESVLALP------SGSLIASAGGNS------------------VKVWDLTTGG-Q-L 230 (487)
T ss_pred CceeEEe---cCC----Cc---eeeEEEcC------CCCEEEEcCCCe------------------EEEEEecCCc-e-e
Confidence 565332 222 11 12233432 134555556632 2334443211 0 0
Q ss_pred eecCC-CCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCC
Q 009420 309 LETMP-QPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDG 387 (535)
Q Consensus 309 ~~~m~-~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG 387 (535)
...|. +-..--+....-|++=++.||.+ + .+-+|| +. .|+.+-.+..|----|++ +.||+
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD-~------------~VKVfd--~t---~~Kvv~s~~~~~pvLsia-vs~dd 291 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLD-R------------HVKVFD--TT---NYKVVHSWKYPGPVLSIA-VSPDD 291 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccc-c------------ceEEEE--cc---ceEEEEeeecccceeeEE-ecCCC
Confidence 00111 11111111222355666777765 1 468999 55 677665554444334555 45899
Q ss_pred cEEEecCCC
Q 009420 388 RVLVGGSNP 396 (535)
Q Consensus 388 ~V~v~GG~~ 396 (535)
+.+|+|...
T Consensus 292 ~t~viGmsn 300 (487)
T KOG0310|consen 292 QTVVIGMSN 300 (487)
T ss_pred ceEEEeccc
Confidence 999999754
No 70
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=93.08 E-value=2.3 Score=41.12 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCccccccccccc
Q 009420 210 DGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFV 289 (535)
Q Consensus 210 dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~ 289 (535)
||-|.+.......++||.|.+|. .+|+.+. ++.++... ...+...+ ...+=||+.+.....+
T Consensus 5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~--~~~~~~~~-~~~~G~d~---~~~~YKVv~~~~~~~~----------- 66 (230)
T TIGR01640 5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKS--RRSNKESD-TYFLGYDP---IEKQYKVLCFSDRSGN----------- 66 (230)
T ss_pred ceEEEEecCCcEEEECCCCCCEE-ecCCCCC--cccccccc-eEEEeecc---cCCcEEEEEEEeecCC-----------
Confidence 44443333355779999999998 5875443 12222110 11111111 0113466666442100
Q ss_pred ccCCceEEEEecCCCCCeeee-cCC-CCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceee
Q 009420 290 AALNTCARIKITDPTPTWVLE-TMP-QPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDL 367 (535)
Q Consensus 290 pa~~s~e~~d~~~~~~~W~~~-~m~-~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~ 367 (535)
.....+++|++.+ +.|+.. ..+ ........+. .||.||-+.-...+ ++...+..||-.++ +|+.
T Consensus 67 ~~~~~~~Vys~~~--~~Wr~~~~~~~~~~~~~~~v~-~~G~lyw~~~~~~~--------~~~~~IvsFDl~~E---~f~~ 132 (230)
T TIGR01640 67 RNQSEHQVYTLGS--NSWRTIECSPPHHPLKSRGVC-INGVLYYLAYTLKT--------NPDYFIVSFDVSSE---RFKE 132 (230)
T ss_pred CCCccEEEEEeCC--CCccccccCCCCccccCCeEE-ECCEEEEEEEECCC--------CCcEEEEEEEcccc---eEee
Confidence 0134688999985 799986 222 1111112343 49999988643211 11225789999999 9995
Q ss_pred cCCCCCCccc-c-cceeecCCCcEEEecC
Q 009420 368 QNPSTIPRMY-H-STAVLLRDGRVLVGGS 394 (535)
Q Consensus 368 ~~~~~~~R~y-h-s~a~LlpDG~V~v~GG 394 (535)
.-++|..+.. + ...+...+|++-++..
T Consensus 133 ~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 133 FIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred eeecCccccccccceEEEEECCEEEEEEe
Confidence 2233433321 1 1223333677776654
No 71
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.41 E-value=12 Score=36.75 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=53.7
Q ss_pred eEEEEecCCCCCeeeecCCCCce-eceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCce-eecCCCC
Q 009420 295 CARIKITDPTPTWVLETMPQPRV-MGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRF-DLQNPST 372 (535)
Q Consensus 295 ~e~~d~~~~~~~W~~~~m~~~R~-~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W-t~~~~~~ 372 (535)
+...|+.+ +.-..+.||+.-. .-...+.|||+.++ +..++| ...+|+--+. +. +.+.|..
T Consensus 148 irvWDl~~--~~c~~~liPe~~~~i~sl~v~~dgsml~-a~nnkG------------~cyvW~l~~~---~~~s~l~P~~ 209 (311)
T KOG0315|consen 148 IRVWDLGE--NSCTHELIPEDDTSIQSLTVMPDGSMLA-AANNKG------------NCYVWRLLNH---QTASELEPVH 209 (311)
T ss_pred EEEEEccC--CccccccCCCCCcceeeEEEcCCCcEEE-EecCCc------------cEEEEEccCC---CccccceEhh
Confidence 44566653 4444445555432 22346789999765 444433 3466766554 22 2222222
Q ss_pred --CCcccccc-eeecCCCcEEEecCCCCccccccCCCCCceeeEEEEcCCCCCC
Q 009420 373 --IPRMYHST-AVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDA 423 (535)
Q Consensus 373 --~~R~yhs~-a~LlpDG~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl~~ 423 (535)
.+|..|.. +.|.||++.+++-|.. .++-||+-.-+|+
T Consensus 210 k~~ah~~~il~C~lSPd~k~lat~ssd--------------ktv~iwn~~~~~k 249 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYLATCSSD--------------KTVKIWNTDDFFK 249 (311)
T ss_pred heecccceEEEEEECCCCcEEEeecCC--------------ceEEEEecCCcee
Confidence 23555554 5678999999887743 3456666555554
No 72
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=92.28 E-value=0.13 Score=54.45 Aligned_cols=132 Identities=15% Similarity=0.165 Sum_probs=83.8
Q ss_pred CCceEEcc---cCCCcceeEEEEeeCC--eEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcccc---
Q 009420 26 GGGWQLLQ---KSIGISSMHMQLLNND--RVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQS--- 97 (535)
Q Consensus 26 ~g~W~~l~---~~~~~~~~~~~~~~~g--kv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~--- 97 (535)
.+.|..+. ..|+.|+-|-.+.... |+|++|.+- +.+..+.-++| ....+||..++.|.-+...+
T Consensus 297 e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~-~sS~r~~~s~R-------sDfW~FDi~~~~W~~ls~dt~~d 368 (723)
T KOG2437|consen 297 ENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYL-DSSVRNSKSLR-------SDFWRFDIDTNTWMLLSEDTAAD 368 (723)
T ss_pred cceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcc-ccccccccccc-------cceEEEecCCceeEEeccccccc
Confidence 35588753 2578888898887655 999999863 22222111333 56889999999999887432
Q ss_pred ----ccccccceecCC-CcEEEEcCCCC-----CCCeEEEEcCCCCCCCCceecCC----------CCcccccceEEEec
Q 009420 98 ----NVWCSSGAVRPD-GVLIQTGGFND-----GEKKIRSFVPCNDESCDWKEIDG----------LGARRWYATDHILP 157 (535)
Q Consensus 98 ----~~~c~~~~~l~d-G~l~v~GG~~~-----g~~~v~~ydp~~~~~~~W~~~~~----------m~~~R~y~s~~~L~ 157 (535)
..|-+..++..+ |.|||+||... .......||.. ...|..+.. -...|-.+.+...+
T Consensus 369 GGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~---~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~ 445 (723)
T KOG2437|consen 369 GGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQ---CQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHS 445 (723)
T ss_pred CCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecC---CccHHHHHHHHhhcCcchhHHHHHHHHHHHhcC
Confidence 235444444322 34999999742 12457789988 778987652 12346666666666
Q ss_pred CC-cEEEEcCcc
Q 009420 158 DG-RIIIIGGRR 168 (535)
Q Consensus 158 dG-~vyvvGG~~ 168 (535)
|+ ++|+.||..
T Consensus 446 ~n~~ly~fggq~ 457 (723)
T KOG2437|consen 446 KNRCLYVFGGQR 457 (723)
T ss_pred CCCeEEeccCcc
Confidence 54 566666654
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.09 E-value=0.93 Score=44.12 Aligned_cols=198 Identities=15% Similarity=0.227 Sum_probs=105.9
Q ss_pred cccccccCCCceEEcccCCCcceeE-----EEEe-eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEE
Q 009420 18 HRIVTDAAGGGWQLLQKSIGISSMH-----MQLL-NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFR 91 (535)
Q Consensus 18 ~~~~~~~~~g~W~~l~~~~~~~~~~-----~~~~-~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~ 91 (535)
.+++|+-...-|..+.+.--....| ++.. .|.+-++-||.+ .-..+||.+.-+-.
T Consensus 75 asaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~e-------------------kllrvfdln~p~Ap 135 (334)
T KOG0278|consen 75 ASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQE-------------------KLLRVFDLNRPKAP 135 (334)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchH-------------------HHhhhhhccCCCCC
Confidence 3355666777788876532222222 2222 244445555533 12456776665554
Q ss_pred ECcc-------ccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEE
Q 009420 92 PLFV-------QSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIII 164 (535)
Q Consensus 92 ~~~~-------~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvv 164 (535)
+... .+-.||+. |..|+-. .. .+.|+++|-. +.+ ++..|..+.---++.+-.||+|+.+
T Consensus 136 p~E~~ghtg~Ir~v~wc~e-----D~~iLSS--ad--d~tVRLWD~r---Tgt--~v~sL~~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHE-----DKCILSS--AD--DKTVRLWDHR---TGT--EVQSLEFNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred chhhcCCCCcceeEEEecc-----CceEEee--cc--CCceEEEEec---cCc--EEEEEecCCCCcceeeccCCCEEEE
Confidence 4431 23346654 6666654 22 3789999987 443 4455555544456777789999998
Q ss_pred cCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeE--EEEECCCCeEEEecCCCCCC
Q 009420 165 GGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRA--ILFDYVNNKVVKQYPAIPGG 241 (535)
Q Consensus 165 GG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~--~~yDp~t~~W~~~~p~~p~~ 241 (535)
- .+.++.+| ++. +..|+. .+ .+++ --.+.+-|+-.+|+.||... ..||..|+.-.. . .-
T Consensus 202 a--~gssV~Fwdaks-------f~~lKs-~k--~P~n-V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~-~--~n-- 263 (334)
T KOG0278|consen 202 A--YGSSVKFWDAKS-------FGLLKS-YK--MPCN-VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG-S--YN-- 263 (334)
T ss_pred e--cCceeEEecccc-------ccceee-cc--Cccc-cccccccCCCceEEecCcceEEEEEeccCCceee-e--cc--
Confidence 3 23355666 332 111111 11 0111 11245667889999999865 567888876331 1 10
Q ss_pred CCCCCCCCCceEeecccccCCCCCCcEEEEEcCCC
Q 009420 242 DPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAP 276 (535)
Q Consensus 242 ~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~ 276 (535)
...+ |..-.+...| +|++|+.|-.+
T Consensus 264 --kgh~--gpVhcVrFSP------dGE~yAsGSED 288 (334)
T KOG0278|consen 264 --KGHF--GPVHCVRFSP------DGELYASGSED 288 (334)
T ss_pred --cCCC--CceEEEEECC------CCceeeccCCC
Confidence 1111 3322223333 89999998765
No 74
>PTZ00421 coronin; Provisional
Probab=91.60 E-value=24 Score=38.60 Aligned_cols=50 Identities=6% Similarity=0.109 Sum_probs=26.5
Q ss_pred eeEEEECCCCCEE-----ECcc--ccccccccceecCC-CcEEEEcCCCCCCCeEEEEcCC
Q 009420 79 HSVEYSVLTNEFR-----PLFV--QSNVWCSSGAVRPD-GVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 79 ~~~~yDp~t~~w~-----~~~~--~~~~~c~~~~~l~d-G~l~v~GG~~~g~~~v~~ydp~ 131 (535)
.+.+||..++... ++.. .+........+-++ +.+++.||.+ ..+++||..
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D---gtVrIWDl~ 156 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD---MVVNVWDVE 156 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC---CEEEEEECC
Confidence 4678887655321 1111 12222222233444 3678888763 568899876
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.80 E-value=10 Score=36.84 Aligned_cols=140 Identities=18% Similarity=0.154 Sum_probs=74.4
Q ss_pred EEEECCCCCEEECccc-----cccccccceecCCCcEEEEcCCCC---CC--CeEEEEcCCCCCCCCceecC-CCCcccc
Q 009420 81 VEYSVLTNEFRPLFVQ-----SNVWCSSGAVRPDGVLIQTGGFND---GE--KKIRSFVPCNDESCDWKEID-GLGARRW 149 (535)
Q Consensus 81 ~~yDp~t~~w~~~~~~-----~~~~c~~~~~l~dG~l~v~GG~~~---g~--~~v~~ydp~~~~~~~W~~~~-~m~~~R~ 149 (535)
.++|+.+++++.+... ...++.-.++.++|+||+.--... .. ..+.++++. .+.+.+. .|..+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~~~~~p-- 136 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVADGLGFP-- 136 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEEEESSE--
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEecCcccc--
Confidence 5669999999888643 345666778889999998642211 11 458888885 2333332 33333
Q ss_pred cceEEEecCCcEEEEcCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcceE-EEeeCCcEEEE--ecCeEEEEE
Q 009420 150 YATDHILPDGRIIIIGGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFV-FLNVDGFLFIF--ANNRAILFD 225 (535)
Q Consensus 150 y~s~~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~-~~~~dG~ifv~--gg~~~~~yD 225 (535)
.+.+.-+||+.+.+.-+....+..| .......+.....+..... ..-+|-. .+-.+|+||+. ++..+.+||
T Consensus 137 -NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 137 -NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG----GPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp -EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS----SSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred -cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC----CCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 2566667887544433333334445 3222111211110101000 0113543 44569999997 678899999
Q ss_pred CCCCeE
Q 009420 226 YVNNKV 231 (535)
Q Consensus 226 p~t~~W 231 (535)
|+....
T Consensus 212 p~G~~~ 217 (246)
T PF08450_consen 212 PDGKLL 217 (246)
T ss_dssp TTSCEE
T ss_pred CCccEE
Confidence 995443
No 76
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.67 E-value=4.8 Score=41.83 Aligned_cols=116 Identities=14% Similarity=0.091 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCccCC---------eeEEE---
Q 009420 108 PDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRRQF---------NYEFY--- 175 (535)
Q Consensus 108 ~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~---------~~E~y--- 175 (535)
.+.+|+.++.. ..+-+||+. +..-..+|.|..+..++.+..+ +|+|||+...... ..|.+
T Consensus 75 ~gskIv~~d~~----~~t~vyDt~---t~av~~~P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS----GRTLVYDTD---TRAVATGPRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC----CCeEEEECC---CCeEeccCCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEeccc
Confidence 57788888655 347899999 7777788899888888877777 6789999876321 55655
Q ss_pred eC------CCCCCeeeeccccccCCccccCCCc-ceEEEeeCC-cEEEEec-C--eEEEEECCCCeEEE
Q 009420 176 PK------NGAPNVYSLPFLVQTNDPRVENNLY-PFVFLNVDG-FLFIFAN-N--RAILFDYVNNKVVK 233 (535)
Q Consensus 176 P~------~~~~~w~~~~~l~~~~~~~~~~~~y-p~~~~~~dG-~ifv~gg-~--~~~~yDp~t~~W~~ 233 (535)
+. .....|..+|...-..+. ....+ =..+++.|| .||+.-. . ....||..+.+|.+
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~--~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDR--RYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccC--CcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceee
Confidence 11 112345555422111110 00000 123444455 6998544 3 58899999999985
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.48 E-value=31 Score=40.08 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=106.4
Q ss_pred ceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceec--C--CCCcccccceEEEec-CCcEEEEcCccCCeeEEEeCC
Q 009420 104 GAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEI--D--GLGARRWYATDHILP-DGRIIIIGGRRQFNYEFYPKN 178 (535)
Q Consensus 104 ~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~--~--~m~~~R~y~s~~~L~-dG~vyvvGG~~~~~~E~yP~~ 178 (535)
..+-+||+++++||.+ ..+.+||.... ....... + .+.....-.+.+..+ ++..++.|+.++ .+.+|...
T Consensus 489 i~fs~dg~~latgg~D---~~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg-~v~lWd~~ 563 (793)
T PLN00181 489 IGFDRDGEFFATAGVN---KKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEG-VVQVWDVA 563 (793)
T ss_pred EEECCCCCEEEEEeCC---CEEEEEECCcc-cccccccccceEEecccCceeeEEeccCCCCEEEEEeCCC-eEEEEECC
Confidence 4456799999999974 57888986410 0111110 0 111100001122222 466777777653 56666222
Q ss_pred CCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecC--eEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeec
Q 009420 179 GAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANN--RAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLP 256 (535)
Q Consensus 179 ~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~--~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lp 256 (535)
.. +. ...+....+ ..+...+.-.++.+++.|+. .+.+||..+..-...+ .. .. .-.++...
T Consensus 564 ~~-~~--~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~~---~~---~v~~v~~~ 626 (793)
T PLN00181 564 RS-QL--VTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---KT---KA---NICCVQFP 626 (793)
T ss_pred CC-eE--EEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---ec---CC---CeEEEEEe
Confidence 10 11 111111100 01111111237788888764 5788998876533222 11 10 01122211
Q ss_pred ccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeeecCCCCceeceeEEccCCeEEEEcCCC
Q 009420 257 LKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMGDMTLLPNGNVLLINGAG 336 (535)
Q Consensus 257 l~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~~m~~~R~~~~~v~lpdG~I~vvGG~~ 336 (535)
..+++.+++|+.+ ..+..||+...........-..... ..+...++..++.++.+
T Consensus 627 -------~~~g~~latgs~d----------------g~I~iwD~~~~~~~~~~~~~h~~~V--~~v~f~~~~~lvs~s~D 681 (793)
T PLN00181 627 -------SESGRSLAFGSAD----------------HKVYYYDLRNPKLPLCTMIGHSKTV--SYVRFVDSSTLVSSSTD 681 (793)
T ss_pred -------CCCCCEEEEEeCC----------------CeEEEEECCCCCccceEecCCCCCE--EEEEEeCCCEEEEEECC
Confidence 0257888888765 2345566643111111111111111 12334578888888754
Q ss_pred CCCCCcccCCCCccccEEEeCCCCC-CCceeecCCCCCCcccccceeecCCCcEEEecCCC
Q 009420 337 KGTAGWELGRDPVLAPVVYRPDNIP-GSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGSNP 396 (535)
Q Consensus 337 ~g~~g~~~~~~~~~~~e~YDP~t~~-g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG~~ 396 (535)
+ ++.+||..+.. +..|..+....-.........+.++|.++++|+..
T Consensus 682 -~------------~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D 729 (793)
T PLN00181 682 -N------------TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET 729 (793)
T ss_pred -C------------EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 2 46789876531 01232221111101111234467899999999964
No 78
>PRK13684 Ycf48-like protein; Provisional
Probab=90.41 E-value=24 Score=36.46 Aligned_cols=74 Identities=19% Similarity=0.363 Sum_probs=44.3
Q ss_pred CCeeeecCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcc--ccccee
Q 009420 305 PTWVLETMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRM--YHSTAV 382 (535)
Q Consensus 305 ~~W~~~~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~--yhs~a~ 382 (535)
.+|+..+.+..+.-.+++..++|+++++|.. |. .++. .++.|.+|+.......... .++. .
T Consensus 204 ~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~--G~-------------~~~~-s~d~G~sW~~~~~~~~~~~~~l~~v-~ 266 (334)
T PRK13684 204 TAWTPHQRNSSRRLQSMGFQPDGNLWMLARG--GQ-------------IRFN-DPDDLESWSKPIIPEITNGYGYLDL-A 266 (334)
T ss_pred CeEEEeeCCCcccceeeeEcCCCCEEEEecC--CE-------------EEEc-cCCCCCccccccCCccccccceeeE-E
Confidence 4698875566666666677789999998753 21 1221 3566779996532111111 2222 3
Q ss_pred ecCCCcEEEecCC
Q 009420 383 LLRDGRVLVGGSN 395 (535)
Q Consensus 383 LlpDG~V~v~GG~ 395 (535)
..++++++++|..
T Consensus 267 ~~~~~~~~~~G~~ 279 (334)
T PRK13684 267 YRTPGEIWAGGGN 279 (334)
T ss_pred EcCCCCEEEEcCC
Confidence 3568899998864
No 79
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=88.91 E-value=22 Score=33.90 Aligned_cols=133 Identities=11% Similarity=-0.031 Sum_probs=66.5
Q ss_pred eeEEEECCCCC--EEECccccccccccc--eecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEE
Q 009420 79 HSVEYSVLTNE--FRPLFVQSNVWCSSG--AVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDH 154 (535)
Q Consensus 79 ~~~~yDp~t~~--w~~~~~~~~~~c~~~--~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~ 154 (535)
.+.++|+.+++ |+.-. .. ...... .+..++++|+..+. ..+..||+.+ ++-.|+.-. +.+-.. ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~----~~l~~~d~~t-G~~~W~~~~--~~~~~~-~~- 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-GP-GIGGPVATAVPDGGRVYVASGD----GNLYALDAKT-GKVLWRFDL--PGPISG-AP- 72 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-SS-SCSSEEETEEEETTEEEEEETT----SEEEEEETTT-SEEEEEEEC--SSCGGS-GE-
T ss_pred EEEEEECCCCCEEEEEEC-CC-CCCCccceEEEeCCEEEEEcCC----CEEEEEECCC-CCEEEEeec--cccccc-ee-
Confidence 56788888776 66522 11 122222 34457888887433 6788999862 122566433 221111 12
Q ss_pred EecCCcEEEEcCccCCeeEEE-eCCCCCCeee-eccccccCCccccCCCcceEEEeeCCcEEEEe-cCeEEEEECCCCe
Q 009420 155 ILPDGRIIIIGGRRQFNYEFY-PKNGAPNVYS-LPFLVQTNDPRVENNLYPFVFLNVDGFLFIFA-NNRAILFDYVNNK 230 (535)
Q Consensus 155 ~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~-~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~g-g~~~~~yDp~t~~ 230 (535)
...+++||+....+ .+..+ ..+....|.. ....... . ...+....+.++++|+.. +.....+|+++++
T Consensus 73 ~~~~~~v~v~~~~~--~l~~~d~~tG~~~W~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 73 VVDGGRVYVGTSDG--SLYALDAKTGKVLWSIYLTSSPPA-----G-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp EEETTEEEEEETTS--EEEEEETTTSCEEEEEEE-SSCTC-----S-TB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred eeccccccccccee--eeEecccCCcceeeeecccccccc-----c-cccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 34478888876332 34444 2332234542 2110000 0 011222333355666665 5678899999875
No 80
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=88.52 E-value=15 Score=36.66 Aligned_cols=182 Identities=14% Similarity=0.218 Sum_probs=89.6
Q ss_pred CCCCcccccceEEEec-CC--cEEEEcCccCCeeEEEeCCC--CCCee-eeccccccCCccccCCCcceEEEeeCCcEEE
Q 009420 142 DGLGARRWYATDHILP-DG--RIIIIGGRRQFNYEFYPKNG--APNVY-SLPFLVQTNDPRVENNLYPFVFLNVDGFLFI 215 (535)
Q Consensus 142 ~~m~~~R~y~s~~~L~-dG--~vyvvGG~~~~~~E~yP~~~--~~~w~-~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv 215 (535)
.+.+.+|+.|++-++. .| -+.++||+.-. |... ..+|. ..... |
T Consensus 82 GdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~-----P~~qRTTenWNsVvDC~-------------P------------ 131 (337)
T PF03089_consen 82 GDVPEARYGHTINVVHSRGKTACVLFGGRSYM-----PPGQRTTENWNSVVDCP-------------P------------ 131 (337)
T ss_pred CCCCcccccceEEEEEECCcEEEEEECCcccC-----CccccchhhcceeccCC-------------C------------
Confidence 5889999999887664 34 35667887410 2210 12453 22211 1
Q ss_pred EecCeEEEEECCCCeEE-EecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCc
Q 009420 216 FANNRAILFDYVNNKVV-KQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNT 294 (535)
Q Consensus 216 ~gg~~~~~yDp~t~~W~-~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s 294 (535)
.+.+.|.+.+..+ ..+|.+..+ -++ -+.+. -++.||++||....... ....
T Consensus 132 ----~VfLiDleFGC~tah~lpEl~dG--~SF-------Hvsla------r~D~VYilGGHsl~sd~---------Rpp~ 183 (337)
T PF03089_consen 132 ----QVFLIDLEFGCCTAHTLPELQDG--QSF-------HVSLA------RNDCVYILGGHSLESDS---------RPPR 183 (337)
T ss_pred ----eEEEEeccccccccccchhhcCC--eEE-------EEEEe------cCceEEEEccEEccCCC---------CCCc
Confidence 1556788776654 134444432 233 22222 38999999997521110 1122
Q ss_pred eEEE--EecCCCCCeeeecCCCCceeceeEEcc--CCeEEEEcCCCCCCCCcccCCCCc-------cccEEEeCCCCCCC
Q 009420 295 CARI--KITDPTPTWVLETMPQPRVMGDMTLLP--NGNVLLINGAGKGTAGWELGRDPV-------LAPVVYRPDNIPGS 363 (535)
Q Consensus 295 ~e~~--d~~~~~~~W~~~~m~~~R~~~~~v~lp--dG~I~vvGG~~~g~~g~~~~~~~~-------~~~e~YDP~t~~g~ 363 (535)
..++ |+-..++.-+-.-+...-....+++.+ ..+-+|+||+....+- +-.. ..+++=.-+++
T Consensus 184 l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQK----Rm~C~~V~Ldd~~I~ie~~E~P--- 256 (337)
T PF03089_consen 184 LYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQK----RMECNTVSLDDDGIHIEEREPP--- 256 (337)
T ss_pred EEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEeccccccee----eeeeeEEEEeCCceEeccCCCC---
Confidence 3333 332222222212344444444444332 2577889998743220 0000 12344444566
Q ss_pred ceeecCCCCCCcccccceeecCCCcEEEe
Q 009420 364 RFDLQNPSTIPRMYHSTAVLLRDGRVLVG 392 (535)
Q Consensus 364 ~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~ 392 (535)
.|+. .....|.+.+..+ -.|.++++
T Consensus 257 ~Wt~--dI~hSrtWFGgs~--G~G~~Li~ 281 (337)
T PF03089_consen 257 EWTG--DIKHSRTWFGGSM--GKGSALIG 281 (337)
T ss_pred CCCC--CcCcCcccccccc--CCceEEEE
Confidence 8873 4566677776543 36666654
No 81
>PTZ00421 coronin; Provisional
Probab=87.99 E-value=26 Score=38.32 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=66.8
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCc-eecCCCCcccccceEEEec
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDW-KEIDGLGARRWYATDHILP 157 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W-~~~~~m~~~R~y~s~~~L~ 157 (535)
.+.+||..+++-...-..+.....+...-+||.++++|+.+ +.+++||+. +.+- ..+..-...+ ...+...+
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D---g~IrIwD~r---sg~~v~tl~~H~~~~-~~~~~w~~ 221 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD---KKLNIIDPR---DGTIVSSVEAHASAK-SQRCLWAK 221 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC---CEEEEEECC---CCcEEEEEecCCCCc-ceEEEEcC
Confidence 46788988775322111122222234456799999999874 679999998 4431 1111111111 11223344
Q ss_pred CCcEEEEcCcc---CCeeEEE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEec---CeEEEEECCCCe
Q 009420 158 DGRIIIIGGRR---QFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN---NRAILFDYVNNK 230 (535)
Q Consensus 158 dG~vyvvGG~~---~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg---~~~~~yDp~t~~ 230 (535)
++..++..|.+ ...+.+| .+.. ......-.+ +. ...-...+.-+|+++++.|+ ..+.+||..+++
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~-~~p~~~~~~----d~---~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKM-ASPYSTVDL----DQ---SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCC-CCceeEecc----CC---CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 54444444432 3456677 3321 111110000 00 00000112235787776654 357789988776
Q ss_pred EE
Q 009420 231 VV 232 (535)
Q Consensus 231 W~ 232 (535)
..
T Consensus 294 ~~ 295 (493)
T PTZ00421 294 LT 295 (493)
T ss_pred eE
Confidence 54
No 82
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.87 E-value=36 Score=35.15 Aligned_cols=278 Identities=17% Similarity=0.252 Sum_probs=125.0
Q ss_pred ccCCCceEEcccCC-CcceeEEEEee-CCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcccc---
Q 009420 23 DAAGGGWQLLQKSI-GISSMHMQLLN-NDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQS--- 97 (535)
Q Consensus 23 ~~~~g~W~~l~~~~-~~~~~~~~~~~-~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~--- 97 (535)
+...++++.+.... ...+...++-+ ++.||+..... .. .| .-.+...|+.+++.+.+....
T Consensus 21 d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~-~~------~g-------~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 21 DEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS-GD------SG-------GVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp ETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS-ST------TT-------EEEEEEEETTTTEEEEEEEEEESS
T ss_pred cCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc-cC------CC-------CEEEEEECCCcceeEEeeeeccCC
Confidence 55678887765321 12222233323 45666665421 01 12 123445566667888876332
Q ss_pred ccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceec----------CC--CCcccccceEEEecCCcEEEEc
Q 009420 98 NVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEI----------DG--LGARRWYATDHILPDGRIIIIG 165 (535)
Q Consensus 98 ~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~----------~~--m~~~R~y~s~~~L~dG~vyvvG 165 (535)
..-|+ .++.+||+.+++.-+.+ .++.+|+...+ .+-.+. +. -+..-.-|.+...+||+.+.+-
T Consensus 87 ~~p~~-i~~~~~g~~l~vany~~--g~v~v~~l~~~--g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 87 SSPCH-IAVDPDGRFLYVANYGG--GSVSVFPLDDD--GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp SCEEE-EEECTTSSEEEEEETTT--TEEEEEEECTT--SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred CCcEE-EEEecCCCEEEEEEccC--CeEEEEEccCC--cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 22343 23446787666644322 45666665521 111111 10 1122234566777788755554
Q ss_pred CccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcce-EEEeeCCc-EEEEec--CeEEEEECC--CCeEEE--ecC
Q 009420 166 GRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPF-VFLNVDGF-LFIFAN--NRAILFDYV--NNKVVK--QYP 236 (535)
Q Consensus 166 G~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~-~~~~~dG~-ifv~gg--~~~~~yDp~--t~~W~~--~~p 236 (535)
-.....+.+| -............+. .+.+.-|+ +..-+||+ +|+..- +.+..|+.. +.++.. .++
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIK------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEE------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccc------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 3333456666 222111121111110 11223354 45566876 556553 455555544 555542 334
Q ss_pred CCCCCCCCCCCCCCceEeecccccCCCCCCcE-EEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-----
Q 009420 237 AIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAE-VLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE----- 310 (535)
Q Consensus 237 ~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gk-Iyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~----- 310 (535)
.+|...... . ..+.+.+ .| +++ +|+.--. .+++..|++...+.+-+..
T Consensus 236 ~~~~~~~~~-~-~~~~i~i--sp------dg~~lyvsnr~----------------~~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 236 TLPEGFTGE-N-APAEIAI--SP------DGRFLYVSNRG----------------SNSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp SCETTSCSS-S-SEEEEEE---T------TSSEEEEEECT----------------TTEEEEEEECTTTTTEEEEEEEEE
T ss_pred ecccccccc-C-CceeEEE--ec------CCCEEEEEecc----------------CCEEEEEEEecCCCceEEEEEEeC
Confidence 444321111 0 1222222 21 444 5554221 3445566663322333332
Q ss_pred cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEE--eCCCCCCCceeecC
Q 009420 311 TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVY--RPDNIPGSRFDLQN 369 (535)
Q Consensus 311 ~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~Y--DP~t~~g~~Wt~~~ 369 (535)
.-..||.+ .+-|||+.+++.....+ .+.+| |+++. +++.+.
T Consensus 290 ~G~~Pr~~---~~s~~g~~l~Va~~~s~------------~v~vf~~d~~tG---~l~~~~ 332 (345)
T PF10282_consen 290 GGKFPRHF---AFSPDGRYLYVANQDSN------------TVSVFDIDPDTG---KLTPVG 332 (345)
T ss_dssp SSSSEEEE---EE-TTSSEEEEEETTTT------------EEEEEEEETTTT---EEEEEE
T ss_pred CCCCccEE---EEeCCCCEEEEEecCCC------------eEEEEEEeCCCC---cEEEec
Confidence 23457764 44689997777654421 45666 66777 776553
No 83
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.36 E-value=19 Score=37.40 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=53.4
Q ss_pred eeEEEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccc-cccccceecCCCcEEEEcCC
Q 009420 40 SMHMQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSN-VWCSSGAVRPDGVLIQTGGF 118 (535)
Q Consensus 40 ~~~~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~-~~c~~~~~l~dG~l~v~GG~ 118 (535)
.++.+.+.+.||+.++.. | .+-+||.+|.....++.+.. ..|. .++...++||++...
T Consensus 68 ~~~F~al~gskIv~~d~~-----------~---------~t~vyDt~t~av~~~P~l~~pk~~p-isv~VG~~LY~m~~~ 126 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQS-----------G---------RTLVYDTDTRAVATGPRLHSPKRCP-ISVSVGDKLYAMDRS 126 (342)
T ss_pred eeEEEEecCCeEEEEcCC-----------C---------CeEEEECCCCeEeccCCCCCCCcce-EEEEeCCeEEEeecc
Confidence 455556568899988752 1 26799999999999886654 4454 444447789999875
Q ss_pred CCC--C-----CeEEEE--cCC-----CCCCCCceecCCCC
Q 009420 119 NDG--E-----KKIRSF--VPC-----NDESCDWKEIDGLG 145 (535)
Q Consensus 119 ~~g--~-----~~v~~y--dp~-----~~~~~~W~~~~~m~ 145 (535)
... . ...|.+ ++. ....-.|..+++-+
T Consensus 127 ~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PP 167 (342)
T PF07893_consen 127 PFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPP 167 (342)
T ss_pred CccccccCccceeEEEeccccccccccCCCcceEEcCCCCC
Confidence 321 0 145544 431 11244788887544
No 84
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.29 E-value=37 Score=34.63 Aligned_cols=242 Identities=12% Similarity=0.145 Sum_probs=100.3
Q ss_pred CCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecC-CCCcc-cccceEEEecCCcEEE
Q 009420 86 LTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEID-GLGAR-RWYATDHILPDGRIII 163 (535)
Q Consensus 86 ~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~-~m~~~-R~y~s~~~L~dG~vyv 163 (535)
+.+.|+.+....+.......++-+.+-+++|-+. .+|-.. ++-.+|+... +...+ ......+...+.+.||
T Consensus 4 ~~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~g------~il~T~-DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 4 SGNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAYG------TILKTT-DGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp SS--EEEEE-S-SS-EEEEEESSSS-EEEEETTT------EEEEES-STTSS-EE-----S-----EEEEEEEETTEEEE
T ss_pred cCCCcEEeecCCCCceEEEEEecCCEEEEEecCC------EEEEEC-CCCccccccccCCCccceeeEEEEEecCCceEE
Confidence 3567888876655544455566567888887542 123222 1256898876 34333 2223334444788998
Q ss_pred EcCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcce-EEEeeCCcEEEEecCeEEEEEC--CCCeEEEecCCCC
Q 009420 164 IGGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPF-VFLNVDGFLFIFANNRAILFDY--VNNKVVKQYPAIP 239 (535)
Q Consensus 164 vGG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~-~~~~~dG~ifv~gg~~~~~yDp--~t~~W~~~~p~~p 239 (535)
+|-.. -++ ....+..|..++..... ..-++ ...+.++.+.+.+... .+|-. ...+|........
T Consensus 77 vG~~g----~ll~T~DgG~tW~~v~l~~~l-------pgs~~~i~~l~~~~~~l~~~~G-~iy~T~DgG~tW~~~~~~~~ 144 (302)
T PF14870_consen 77 VGEPG----LLLHTTDGGKTWERVPLSSKL-------PGSPFGITALGDGSAELAGDRG-AIYRTTDGGKTWQAVVSETS 144 (302)
T ss_dssp EEETT----EEEEESSTTSS-EE----TT--------SS-EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE-S--
T ss_pred EcCCc----eEEEecCCCCCcEEeecCCCC-------CCCeeEEEEcCCCcEEEEcCCC-cEEEeCCCCCCeeEcccCCc
Confidence 87431 122 23234578765421110 01122 3445566777766543 34433 3467874322111
Q ss_pred CCCCCCCCCCCc-eEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeeecCCCCcee
Q 009420 240 GGDPRSYPSSGS-AVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVM 318 (535)
Q Consensus 240 ~~~~R~~~~~g~-~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~~m~~~R~~ 318 (535)
++ ..+.. ..+|++++++-.. ..+. ..|+. ...|+....+..|..
T Consensus 145 ----------gs~~~~~r-------~~dG~~vavs~~G-~~~~---------------s~~~G--~~~w~~~~r~~~~ri 189 (302)
T PF14870_consen 145 ----------GSINDITR-------SSDGRYVAVSSRG-NFYS---------------SWDPG--QTTWQPHNRNSSRRI 189 (302)
T ss_dssp ------------EEEEEE--------TTS-EEEEETTS-SEEE---------------EE-TT---SS-EEEE--SSS-E
T ss_pred ----------ceeEeEEE-------CCCCcEEEEECcc-cEEE---------------EecCC--CccceEEccCcccee
Confidence 11 11111 1378888777543 1111 12222 246988866666665
Q ss_pred ceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCccccc--ceeecCCCcEEEecCCC
Q 009420 319 GDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHS--TAVLLRDGRVLVGGSNP 396 (535)
Q Consensus 319 ~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs--~a~LlpDG~V~v~GG~~ 396 (535)
-++..-+|+.|+++. . |.. ..+....+.+++|++-. .++....++ ...-.+++.++++||..
T Consensus 190 q~~gf~~~~~lw~~~--~-Gg~------------~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA--R-GGQ------------IQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEEE-TTS-EEEEE--T-TTE------------EEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred hhceecCCCCEEEEe--C-CcE------------EEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 666677999998875 1 210 11111222223777621 222222222 22345789999999975
Q ss_pred C
Q 009420 397 H 397 (535)
Q Consensus 397 ~ 397 (535)
.
T Consensus 254 ~ 254 (302)
T PF14870_consen 254 T 254 (302)
T ss_dssp -
T ss_pred c
Confidence 3
No 85
>PTZ00420 coronin; Provisional
Probab=86.57 E-value=26 Score=39.05 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=68.0
Q ss_pred eeEEEECCCCCEE-ECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccc-cceEE-E
Q 009420 79 HSVEYSVLTNEFR-PLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRW-YATDH-I 155 (535)
Q Consensus 79 ~~~~yDp~t~~w~-~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~-y~s~~-~ 155 (535)
.+.+||..+++-. .+. ......+.++-+||.++++++.+ +.+++||+. +.+ .+..+..... ..+.+ .
T Consensus 149 tIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D---~~IrIwD~R---sg~--~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVG---KHMHIIDPR---KQE--IASSFHIHDGGKNTKNIW 218 (568)
T ss_pred eEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecC---CEEEEEECC---CCc--EEEEEecccCCceeEEEE
Confidence 4789999887622 111 11122234456799999988753 679999998 432 2222211110 00111 1
Q ss_pred e----cCCcEEEEcCccC---CeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEe--cCeEEEEEC
Q 009420 156 L----PDGRIIIIGGRRQ---FNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFA--NNRAILFDY 226 (535)
Q Consensus 156 L----~dG~vyvvGG~~~---~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~g--g~~~~~yDp 226 (535)
+ +|+..++.+|.+. ..+.+|...+.......-.+... ...+.|+.. -.+|.+|+.| +..+.+|+.
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-----~~~L~p~~D-~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-----SAPLIPHYD-ESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-----ccceEEeee-CCCCCEEEEEECCCeEEEEEc
Confidence 1 4677777777654 25677732211122111001000 011122111 3368899887 346788888
Q ss_pred CCCe
Q 009420 227 VNNK 230 (535)
Q Consensus 227 ~t~~ 230 (535)
..+.
T Consensus 293 ~~~~ 296 (568)
T PTZ00420 293 SLGS 296 (568)
T ss_pred cCCc
Confidence 7664
No 86
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.61 E-value=57 Score=35.21 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=43.9
Q ss_pred eEEEECCCCC--EEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 80 SVEYSVLTNE--FRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 80 ~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
+..++..+.+ -......+...+....+-+||++++.|..+ ..+++||.... ...-..+..+.... .+++.-+
T Consensus 183 i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D---~tiriwd~~~~-~~~~~~l~gH~~~v--~~~~f~p 256 (456)
T KOG0266|consen 183 IRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD---KTLRIWDLKDD-GRNLKTLKGHSTYV--TSVAFSP 256 (456)
T ss_pred EEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC---ceEEEeeccCC-CeEEEEecCCCCce--EEEEecC
Confidence 4556664333 111113456666777788899977776653 67899998410 01112222232222 3455555
Q ss_pred CCcEEEEcCcc
Q 009420 158 DGRIIIIGGRR 168 (535)
Q Consensus 158 dG~vyvvGG~~ 168 (535)
+|+.++.|+.+
T Consensus 257 ~g~~i~Sgs~D 267 (456)
T KOG0266|consen 257 DGNLLVSGSDD 267 (456)
T ss_pred CCCEEEEecCC
Confidence 66666666554
No 87
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=85.53 E-value=56 Score=35.03 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=37.4
Q ss_pred eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc--ccccccc-c--eecCCCcEEEEcCCCCC
Q 009420 47 NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ--SNVWCSS-G--AVRPDGVLIQTGGFNDG 121 (535)
Q Consensus 47 ~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~--~~~~c~~-~--~~l~dG~l~v~GG~~~g 121 (535)
.-..||+||.- +..++.+.+ | . ..+++|.-+.|..+... ....|.+ + +.-.||.||.-|=..+|
T Consensus 66 ~~~~v~~~Gsn--~~~eLGlg~------d--e-~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G 134 (476)
T COG5184 66 KMASVYSWGSN--GMNELGLGN------D--E-TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDG 134 (476)
T ss_pred heeeeEEEecC--cceeeccCC------c--h-hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccc
Confidence 47789999952 222332211 1 1 22789999998866533 3445541 1 23358999999854443
No 88
>PTZ00420 coronin; Provisional
Probab=85.22 E-value=68 Score=35.76 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=15.7
Q ss_pred ceecCCCc-EEEEcCCCCCCCeEEEEcCC
Q 009420 104 GAVRPDGV-LIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 104 ~~~l~dG~-l~v~GG~~~g~~~v~~ydp~ 131 (535)
.++-+++. +++.||.+ ..+++||..
T Consensus 131 Vaf~P~g~~iLaSgS~D---gtIrIWDl~ 156 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFD---SFVNIWDIE 156 (568)
T ss_pred EEECCCCCeEEEEEeCC---CeEEEEECC
Confidence 34455665 45566653 578889886
No 89
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.19 E-value=73 Score=36.09 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=31.5
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 131 (535)
...+|+-+++++---..-+-..-.+.+.-+||.++++|+.+ .+|.+||..
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD---gKVKvWn~~ 380 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED---GKVKVWNTQ 380 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC---CcEEEEecc
Confidence 45667766665532222222223334566899999999974 578888876
No 90
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.75 E-value=39 Score=35.87 Aligned_cols=122 Identities=16% Similarity=0.038 Sum_probs=64.0
Q ss_pred EEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCC-----ceecCCCCccc-ccceEEE
Q 009420 82 EYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCD-----WKEIDGLGARR-WYATDHI 155 (535)
Q Consensus 82 ~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~-----W~~~~~m~~~R-~y~s~~~ 155 (535)
.+|.-...|+++.......-.+.....||.++++|... .+..-+-. ... |.+++. +..+ -..++..
T Consensus 264 s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G----~l~~S~d~---G~~~~~~~f~~~~~-~~~~~~l~~v~~ 335 (398)
T PLN00033 264 TWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG----GLYVSKGT---GLTEEDFDFEEADI-KSRGFGILDVGY 335 (398)
T ss_pred ecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc----eEEEecCC---CCcccccceeeccc-CCCCcceEEEEE
Confidence 34554455898876554444555567899999987542 11111111 233 444332 2122 1234445
Q ss_pred ecCCcEEEEcCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecCeE
Q 009420 156 LPDGRIIIIGGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRA 221 (535)
Q Consensus 156 L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~ 221 (535)
..|+.++++|.... ++ ....+..|...+...+ .+.++| .++...+++.|+.|.+.+
T Consensus 336 ~~d~~~~a~G~~G~----v~~s~D~G~tW~~~~~~~~-----~~~~ly-~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 336 RSKKEAWAAGGSGI----LLRSTDGGKSWKRDKGADN-----IAANLY-SVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred cCCCcEEEEECCCc----EEEeCCCCcceeEccccCC-----CCccee-EEEEcCCCceEEEeCCcE
Confidence 56789998887531 12 2222446764332111 234667 333356789999987653
No 91
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=84.28 E-value=37 Score=31.92 Aligned_cols=135 Identities=18% Similarity=0.238 Sum_probs=64.9
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCC-cccccceEEEec
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLG-ARRWYATDHILP 157 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~-~~R~y~s~~~L~ 157 (535)
.+.+||..+++....-..+.....+.....++++++.|+.. ..+.+||.. +.+-. ..+. ....-.+....+
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~i~~~~~~---~~~~~--~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD---KTIKVWDVE---TGKCL--TTLRGHTDWVNSVAFSP 145 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCC---CeEEEEECC---CcEEE--EEeccCCCcEEEEEEcC
Confidence 46788888753222111222222233455677888888742 568899986 32211 1111 111122344455
Q ss_pred CCcEEEEcCccCCeeEEE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEec--CeEEEEECCCCeEE
Q 009420 158 DGRIIIIGGRRQFNYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN--NRAILFDYVNNKVV 232 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg--~~~~~yDp~t~~W~ 232 (535)
++++++.|..+ ..+.+| .... .....+. ... ...-.....++++.+++++ ..+.+||..+.+..
T Consensus 146 ~~~~l~~~~~~-~~i~i~d~~~~-~~~~~~~---~~~------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 146 DGTFVASSSQD-GTIKLWDLRTG-KCVATLT---GHT------GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred cCCEEEEEcCC-CcEEEEEcccc-ccceeEe---cCc------cccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 56776666533 345556 3221 0111111 000 0011234456775555554 45788999876544
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=83.95 E-value=32 Score=33.83 Aligned_cols=134 Identities=21% Similarity=0.241 Sum_probs=70.6
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCc---ccccceEEEecCCcEEEEcCccCCeeEEEeCCCCCC
Q 009420 106 VRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGA---RRWYATDHILPDGRIIIIGGRRQFNYEFYPKNGAPN 182 (535)
Q Consensus 106 ~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~---~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~ 182 (535)
+.-|-.-+++||.. +-+++||-. . .+.++|.. ++.--.+..+...+-++.. .+..++..|....+..
T Consensus 108 f~~ds~~lltgg~e---kllrvfdln---~---p~App~E~~ghtg~Ir~v~wc~eD~~iLSS-add~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 108 FSQDSNYLLTGGQE---KLLRVFDLN---R---PKAPPKEISGHTGGIRTVLWCHEDKCILSS-ADDKTVRLWDHRTGTE 177 (334)
T ss_pred ecccchhhhccchH---HHhhhhhcc---C---CCCCchhhcCCCCcceeEEEeccCceEEee-ccCCceEEEEeccCcE
Confidence 44566777788874 567888865 1 12233322 2322234444445555544 5556777773321111
Q ss_pred eeeeccccccCCccccCCCcceEEEeeCCcEEEEec-CeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccC
Q 009420 183 VYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN-NRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLL 261 (535)
Q Consensus 183 w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg-~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~ 261 (535)
...+.+... --.+-+..||+|..++. .++..+|+++-.-.+.. .||-. . .++.|-|
T Consensus 178 v~sL~~~s~----------VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~-k~P~n---V----~SASL~P----- 234 (334)
T KOG0278|consen 178 VQSLEFNSP----------VTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY-KMPCN---V----ESASLHP----- 234 (334)
T ss_pred EEEEecCCC----------CcceeeccCCCEEEEecCceeEEeccccccceeec-cCccc---c----ccccccC-----
Confidence 112211100 01244567999998874 56777888875433221 23421 1 2344544
Q ss_pred CCCCCcEEEEEcCCC
Q 009420 262 APSVAAEVLVCGGAP 276 (535)
Q Consensus 262 ~~~~~gkIyv~GG~~ 276 (535)
+-.+|||||.+
T Consensus 235 ----~k~~fVaGged 245 (334)
T KOG0278|consen 235 ----KKEFFVAGGED 245 (334)
T ss_pred ----CCceEEecCcc
Confidence 56899999976
No 93
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=83.54 E-value=59 Score=33.65 Aligned_cols=132 Identities=15% Similarity=0.217 Sum_probs=76.0
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceec---CCCCcccccceEEE
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEI---DGLGARRWYATDHI 155 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~---~~m~~~R~y~s~~~ 155 (535)
.+.+||..++.|--.-.-+.---....+-.||.++++|+.. ..+.+|.-.+ +..+|.-. .+|..-+|-+
T Consensus 87 ~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms---G~v~v~~~st-g~~~~~~~~e~~dieWl~WHp---- 158 (399)
T KOG0296|consen 87 LAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS---GKVLVFKVST-GGEQWKLDQEVEDIEWLKWHP---- 158 (399)
T ss_pred eEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC---ccEEEEEccc-CceEEEeecccCceEEEEecc----
Confidence 46899999998643322221111122355699999999984 4577777652 14467654 3566667765
Q ss_pred ecCCcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEec--CeEEEEECCCCeE
Q 009420 156 LPDGRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN--NRAILFDYVNNKV 231 (535)
Q Consensus 156 L~dG~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg--~~~~~yDp~t~~W 231 (535)
-+.|+..|-.+ .++.+| |... ....++ ... .+. -..-++||||..+.|- ..+.+|||++.+-
T Consensus 159 --~a~illAG~~D-GsvWmw~ip~~~--~~kv~~---Gh~---~~c---t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 159 --RAHILLAGSTD-GSVWMWQIPSQA--LCKVMS---GHN---SPC---TCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred --cccEEEeecCC-CcEEEEECCCcc--eeeEec---CCC---CCc---ccccccCCCceEEEEecCceEEEEecCCCce
Confidence 35677766544 456666 5431 111111 110 000 0124678998777664 4678899999864
Q ss_pred E
Q 009420 232 V 232 (535)
Q Consensus 232 ~ 232 (535)
.
T Consensus 225 ~ 225 (399)
T KOG0296|consen 225 L 225 (399)
T ss_pred e
Confidence 4
No 94
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=82.31 E-value=14 Score=36.44 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=84.5
Q ss_pred EEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCC-CCEEECccc-c-ccccccc-eecCCCcEEEEcCC
Q 009420 43 MQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLT-NEFRPLFVQ-S-NVWCSSG-AVRPDGVLIQTGGF 118 (535)
Q Consensus 43 ~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t-~~w~~~~~~-~-~~~c~~~-~~l~dG~l~v~GG~ 118 (535)
.+.+.+|++++..-.+ .. + .......|...- .+|+..... . ...|... +.+.||+|+++--.
T Consensus 113 ~i~~~~G~l~~~~~~~-~~-------~------~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~ 178 (275)
T PF13088_consen 113 PIQLPDGRLIAPYYHE-SG-------G------SFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRT 178 (275)
T ss_dssp EEEECTTEEEEEEEEE-SS-------C------EEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEE
T ss_pred eeEecCCCEEEEEeec-cc-------c------CcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEc
Confidence 4666799999873111 00 1 012234455544 459877644 2 2444433 34589999998644
Q ss_pred CCCCCeEEEEcCCCCCCCCceecC--CCCcccccceEEEecCCcEEEEcCccC--CeeEEE-eCCCCCCeeeeccccccC
Q 009420 119 NDGEKKIRSFVPCNDESCDWKEID--GLGARRWYATDHILPDGRIIIIGGRRQ--FNYEFY-PKNGAPNVYSLPFLVQTN 193 (535)
Q Consensus 119 ~~g~~~v~~ydp~~~~~~~W~~~~--~m~~~R~y~s~~~L~dG~vyvvGG~~~--~~~E~y-P~~~~~~w~~~~~l~~~~ 193 (535)
. ....+.++--. ++-.+|++.. .++..........+.||+++++..... ....++ ...++..|.....+....
T Consensus 179 ~-~~~~~~~~~S~-D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 179 E-GNDDIYISRST-DGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGP 256 (275)
T ss_dssp C-SSTEEEEEEES-STTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE
T ss_pred c-CCCcEEEEEEC-CCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCC
Confidence 2 11223332222 2256899754 455555555667788999999988422 233344 333345676332222210
Q ss_pred CccccCCCcceEEEeeCCcEEE
Q 009420 194 DPRVENNLYPFVFLNVDGFLFI 215 (535)
Q Consensus 194 ~~~~~~~~yp~~~~~~dG~ifv 215 (535)
....-||.+..++||+|++
T Consensus 257 ---~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 257 ---NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ----CCEEEEEEEEEETTEEEE
T ss_pred ---CCcEECCeeEEeCCCcCCC
Confidence 0124599999999999986
No 95
>PLN00181 protein SPA1-RELATED; Provisional
Probab=82.02 E-value=1.1e+02 Score=35.62 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=46.7
Q ss_pred eeEEEECCCCCEEECccccccccccceec-CCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEE-e
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVR-PDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHI-L 156 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l-~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~-L 156 (535)
.+.+||..+++....-..+.....+..+. .++.+++.||.+ ..+++||.. +.. .+..+.......++.. -
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~~---~~~--~~~~~~~~~~v~~v~~~~ 627 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD---GSVKLWSIN---QGV--SIGTIKTKANICCVQFPS 627 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC---CEEEEEECC---CCc--EEEEEecCCCeEEEEEeC
Confidence 46788887765432222222222223333 378999999874 579999986 322 1111111111111111 2
Q ss_pred cCCcEEEEcCccCCeeEEE
Q 009420 157 PDGRIIIIGGRRQFNYEFY 175 (535)
Q Consensus 157 ~dG~vyvvGG~~~~~~E~y 175 (535)
.+|+.+++|+.++ .+.+|
T Consensus 628 ~~g~~latgs~dg-~I~iw 645 (793)
T PLN00181 628 ESGRSLAFGSADH-KVYYY 645 (793)
T ss_pred CCCCEEEEEeCCC-eEEEE
Confidence 3688999988764 45666
No 96
>PRK01742 tolB translocation protein TolB; Provisional
Probab=81.83 E-value=77 Score=33.80 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=71.1
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
.+.++|..+++-+.+..... .......-+||+.++++...++...++.+|.. +.+...+..-. -.....+.-+|
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~---~~~~~~lt~~~--~~~~~~~wSpD 302 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN---GGTPSQLTSGA--GNNTEPSWSPD 302 (429)
T ss_pred EEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECC---CCCeEeeccCC--CCcCCEEECCC
Confidence 46788998887665543221 12234567899977776544444567777876 55555443211 11223455568
Q ss_pred CcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEE-ecCeEEEEECCCCeEE
Q 009420 159 GRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIF-ANNRAILFDYVNNKVV 232 (535)
Q Consensus 159 G~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~-gg~~~~~yDp~t~~W~ 232 (535)
|+-+++........++| +... .... .+ .. .. |. ....|||+.+++ ++....++|..++++.
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~--~~~~--~l-~~------~~-~~-~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASG--GGAS--LV-GG------RG-YS-AQISADGKTLVMINGDNVVKQDLTSGSTE 366 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCC--CCeE--Ee-cC------CC-CC-ccCCCCCCEEEEEcCCCEEEEECCCCCeE
Confidence 87544433222233455 2221 1110 11 00 01 22 234678875544 4556777999888876
No 97
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=80.65 E-value=53 Score=31.18 Aligned_cols=173 Identities=10% Similarity=0.033 Sum_probs=81.0
Q ss_pred ceEEcccCCCcceeEE-EEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCC--EEECccccccccccc
Q 009420 28 GWQLLQKSIGISSMHM-QLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNE--FRPLFVQSNVWCSSG 104 (535)
Q Consensus 28 ~W~~l~~~~~~~~~~~-~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~--w~~~~~~~~~~c~~~ 104 (535)
.|+.-.. ........ .+..+++||+..+. ....+||+.|++ |+.-. ...+...
T Consensus 16 ~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~~--------------------~~l~~~d~~tG~~~W~~~~--~~~~~~~- 71 (238)
T PF13360_consen 16 LWSYDLG-PGIGGPVATAVPDGGRVYVASGD--------------------GNLYALDAKTGKVLWRFDL--PGPISGA- 71 (238)
T ss_dssp EEEEECS-SSCSSEEETEEEETTEEEEEETT--------------------SEEEEEETTTSEEEEEEEC--SSCGGSG-
T ss_pred EEEEECC-CCCCCccceEEEeCCEEEEEcCC--------------------CEEEEEECCCCCEEEEeec--cccccce-
Confidence 5876321 11223332 33368888887431 257899999987 44332 2332222
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCce-ecCCCCcc-cccceEEEecCCcEEEEcCccCCeeEEE-eCCCCC
Q 009420 105 AVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWK-EIDGLGAR-RWYATDHILPDGRIIIIGGRRQFNYEFY-PKNGAP 181 (535)
Q Consensus 105 ~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~-~~~~m~~~-R~y~s~~~L~dG~vyvvGG~~~~~~E~y-P~~~~~ 181 (535)
....+++||+.... ..+..+|..+ +.-.|+ .....+.. -+......+.++++|+.. .++ .+-.+ +++...
T Consensus 72 ~~~~~~~v~v~~~~----~~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~~~d~~tG~~ 144 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD----GSLYALDAKT-GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSG-KLVALDPKTGKL 144 (238)
T ss_dssp EEEETTEEEEEETT----SEEEEEETTT-SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCS-EEEEEETTTTEE
T ss_pred eeecccccccccce----eeeEecccCC-cceeeeeccccccccccccccCceEecCEEEEEe-ccC-cEEEEecCCCcE
Confidence 24558888887633 3789999662 134688 34322222 122233333244555543 221 22223 332211
Q ss_pred Ceee-eccccccCCccccCCCcceEEEeeCCcEEEEecCe-EEEEECCCCe--EE
Q 009420 182 NVYS-LPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNR-AILFDYVNNK--VV 232 (535)
Q Consensus 182 ~w~~-~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~-~~~yDp~t~~--W~ 232 (535)
.|.. .......... .....-....+..+|+||+..+.. +..+|.++++ |.
T Consensus 145 ~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPI-SSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWS 198 (238)
T ss_dssp EEEEESSTT-SS--E-EEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEE
T ss_pred EEEeecCCCCCCcce-eeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 2321 1100000000 000000123445578999988654 4455999987 74
No 98
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=80.16 E-value=47 Score=33.18 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
...+||..+++=++.-.-+.+---+.++-+|.+-+|.|-.+ +++..||... .++.+....+. .-|-..+...++
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD---kTiklwnt~g--~ck~t~~~~~~-~~WVscvrfsP~ 159 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD---KTIKLWNTLG--VCKYTIHEDSH-REWVSCVRFSPN 159 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc---ceeeeeeecc--cEEEEEecCCC-cCcEEEEEEcCC
Confidence 46789998875544432222211234456788988887663 6788888763 34554444553 345545555555
Q ss_pred C-cEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcc-eEEEeeCCcEEEEecCeE--EEEECCCCe
Q 009420 159 G-RIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYP-FVFLNVDGFLFIFANNRA--ILFDYVNNK 230 (535)
Q Consensus 159 G-~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp-~~~~~~dG~ifv~gg~~~--~~yDp~t~~ 230 (535)
. ..+|+.+...+++.+|...+ ......... ..-|- .+.+.|||.+.+.||.+. .++|.+..+
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~---~~l~~~~~g-------h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRN---CQLRTTFIG-------HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CCCcEEEEccCCceEEEEccCC---cchhhcccc-------ccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 2 45555555556777773221 100000001 11122 346778999999999764 456665443
No 99
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=79.51 E-value=7.8 Score=38.28 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=69.2
Q ss_pred cccCCCceEEcccCC-CcceeEEEEe--eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECC-CCCEEECcc--
Q 009420 22 TDAAGGGWQLLQKSI-GISSMHMQLL--NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVL-TNEFRPLFV-- 95 (535)
Q Consensus 22 ~~~~~g~W~~l~~~~-~~~~~~~~~~--~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~-t~~w~~~~~-- 95 (535)
++.....|+...... .....+..++ .+|+|+++-+.+ +.. .....+... =.+|++...
T Consensus 140 S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---------------~~~~~~S~D~G~TWs~~~~~~ 203 (275)
T PF13088_consen 140 SDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND---------------DIYISRSTDGGRTWSPPQPTN 203 (275)
T ss_dssp ESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST---------------EEEEEEESSTTSS-EEEEEEE
T ss_pred eCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC---------------cEEEEEECCCCCcCCCceecc
Confidence 344445698765532 2244454444 699999998753 211 011222222 235776432
Q ss_pred ccccccc-cceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCccc----ccceEEEecCCcEEE
Q 009420 96 QSNVWCS-SGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARR----WYATDHILPDGRIII 163 (535)
Q Consensus 96 ~~~~~c~-~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R----~y~s~~~L~dG~vyv 163 (535)
..+..+. ....+.+|+++++.....+...+.++=-.+ +..+|.....+...- .|++++.+.||+|+|
T Consensus 204 ~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D-~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 204 LPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSED-GGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECT-TCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeC-CCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 1222222 223467899999887433344444432221 157898776555433 699999999999987
No 100
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.19 E-value=17 Score=36.71 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=60.5
Q ss_pred cccCCCceEEcccCCCcc-eeEEEEe-eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcccc--
Q 009420 22 TDAAGGGWQLLQKSIGIS-SMHMQLL-NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQS-- 97 (535)
Q Consensus 22 ~~~~~g~W~~l~~~~~~~-~~~~~~~-~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~-- 97 (535)
=+....+|..+... +. .++.... .+++||+.|-...+. + .......||.++++|+.+....
T Consensus 21 yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~-------~------~~~~la~yd~~~~~w~~~~~~~s~ 85 (281)
T PF12768_consen 21 YDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNG-------T------NSSNLATYDFKNQTWSSLGGGSSN 85 (281)
T ss_pred EECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECC-------C------CceeEEEEecCCCeeeecCCcccc
Confidence 46678899987542 32 2344443 467777766543111 0 1245789999999999887521
Q ss_pred ---ccccccceecCCC-cEEEEcCCCCCCCeEEEEcCCCCCCCCceecCC
Q 009420 98 ---NVWCSSGAVRPDG-VLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDG 143 (535)
Q Consensus 98 ---~~~c~~~~~l~dG-~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~ 143 (535)
...-.......|+ .+++.|....+...+..|| ..+|..+..
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d-----Gs~W~~i~~ 130 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD-----GSSWSSIGS 130 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc-----CCceEeccc
Confidence 1111111112244 5777776655667788897 558988764
No 101
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=77.18 E-value=96 Score=32.22 Aligned_cols=261 Identities=12% Similarity=0.063 Sum_probs=132.2
Q ss_pred eEEEECCCCC--EEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 80 SVEYSVLTNE--FRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 80 ~~~yDp~t~~--w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
+..+|+.+++ |+.........+.+.....||+||+-... ....+||..+ ++..|..-.... .+|. +.++..
T Consensus 80 i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~----g~~y~ld~~~-G~~~W~~~~~~~-~~~~-~~~v~~ 152 (370)
T COG1520 80 IFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD----GKLYALDAST-GTLVWSRNVGGS-PYYA-SPPVVG 152 (370)
T ss_pred EEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc----ceEEEEECCC-CcEEEEEecCCC-eEEe-cCcEEc
Confidence 6788999887 86654333345666666668998876543 2678888841 256787654333 5654 445555
Q ss_pred CCcEEEEcCccCCeeEEE-eCCCCCCeee-ecc-ccccCCccccCCCcceEEEeeCCcEEEEecC---eEEEEECCCC--
Q 009420 158 DGRIIIIGGRRQFNYEFY-PKNGAPNVYS-LPF-LVQTNDPRVENNLYPFVFLNVDGFLFIFANN---RAILFDYVNN-- 229 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~y-P~~~~~~w~~-~~~-l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~---~~~~yDp~t~-- 229 (535)
|+.||+.. +...+-.. +.+....|.. .+. +... ........+|.+|+.... ...-+|+.++
T Consensus 153 ~~~v~~~s--~~g~~~al~~~tG~~~W~~~~~~~~~~~---------~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 153 DGTVYVGT--DDGHLYALNADTGTLKWTYETPAPLSLS---------IYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred CcEEEEec--CCCeEEEEEccCCcEEEEEecCCccccc---------cccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 88988864 11111112 2222234541 111 1100 011122557777776552 3566788654
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeee
Q 009420 230 KVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVL 309 (535)
Q Consensus 230 ~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~ 309 (535)
.|.+... .+. .+. ... ..| .+..+.||+.|+.-.+.+ .....++|..+....|+.
T Consensus 222 ~w~~~~~-~~~--~~~----~~~-~~~------~~~~~~v~v~~~~~~~~~-----------~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 222 KWSQKVS-QTI--GRT----AIS-TTP------AVDGGPVYVDGGVYAGSY-----------GGKLLCLDADTGELIWSF 276 (370)
T ss_pred eeeeeee-ccc--Ccc----ccc-ccc------cccCceEEECCcEEEEec-----------CCeEEEEEcCCCceEEEE
Confidence 4553110 111 111 000 011 124788888877311111 233667777766678988
Q ss_pred e-cCC--CCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCC-ceeecCCCCCCcccccceeecC
Q 009420 310 E-TMP--QPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGS-RFDLQNPSTIPRMYHSTAVLLR 385 (535)
Q Consensus 310 ~-~m~--~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~-~Wt~~~~~~~~R~yhs~a~Llp 385 (535)
. ++. ..+.+.....--||++|+..-.... .....+.++++..+.-. .|.....- +.. ......-
T Consensus 277 ~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~w~~~~~g---~~~-~~~~~~~ 344 (370)
T COG1520 277 PAGGSVQGSGLYTTPVAGADGKVYIGFTDNDG--------RGSGSLYALADVPGGTLLKWSYPVGG---GYS-LSTVAGS 344 (370)
T ss_pred ecccEeccCCeeEEeecCCCccEEEEEecccc--------ccccceEEEeccCCCeeEEEEEeCCC---cee-cccceec
Confidence 6 522 2233333333358999997643311 01234567776333222 56644332 222 2233335
Q ss_pred CCcEEEecCC
Q 009420 386 DGRVLVGGSN 395 (535)
Q Consensus 386 DG~V~v~GG~ 395 (535)
||.+|.++-+
T Consensus 345 ~g~~y~~~~~ 354 (370)
T COG1520 345 DGTLYFGGDD 354 (370)
T ss_pred cCeEEecccC
Confidence 7777776654
No 102
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=74.24 E-value=67 Score=33.64 Aligned_cols=81 Identities=22% Similarity=0.115 Sum_probs=50.2
Q ss_pred ceeEEEECCCCCEE-ECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCC-cccccceEEE
Q 009420 78 AHSVEYSVLTNEFR-PLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLG-ARRWYATDHI 155 (535)
Q Consensus 78 ~~~~~yDp~t~~w~-~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~-~~R~y~s~~~ 155 (535)
..+.+||..|++-. .+. +.--|.+..+-.||.+++..-.+ ++++++||. +.+-..-. |. ++---.-+..
T Consensus 154 n~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckD---KkvRv~dpr---~~~~v~e~-~~heG~k~~Raif 224 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKD---KKVRVIDPR---RGTVVSEG-VAHEGAKPARAIF 224 (472)
T ss_pred ceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeeccc---ceeEEEcCC---CCcEeeec-ccccCCCcceeEE
Confidence 46788888888632 232 33334445555688888875442 889999999 55433222 22 2222345678
Q ss_pred ecCCcEEEEcCc
Q 009420 156 LPDGRIIIIGGR 167 (535)
Q Consensus 156 L~dG~vyvvGG~ 167 (535)
|.||+|+..|-+
T Consensus 225 l~~g~i~tTGfs 236 (472)
T KOG0303|consen 225 LASGKIFTTGFS 236 (472)
T ss_pred eccCceeeeccc
Confidence 889998887754
No 103
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.88 E-value=1.5e+02 Score=32.06 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=75.1
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCc---eecCCCCcccccceEEE
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDW---KEIDGLGARRWYATDHI 155 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W---~~~~~m~~~R~y~s~~~ 155 (535)
.+.+||.++++-...-..+.....+..+-.||.+++.+.+ + ..+++||.. +..- ..+.....+..-..+..
T Consensus 269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-d--~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~f 342 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY-D--GTIRVWDLE---TGSKLCLKLLSGAENSAPVTSVQF 342 (456)
T ss_pred cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC-C--ccEEEEECC---CCceeeeecccCCCCCCceeEEEE
Confidence 5789999997665554555556666677789999999965 3 679999987 3331 12333333321123333
Q ss_pred ecCCcEEEEcCccCCeeEEE-eCCC--CCCeeeeccccccCCccccCCCcc--eEEEeeCCcEEEEecC--eEEEEECCC
Q 009420 156 LPDGRIIIIGGRRQFNYEFY-PKNG--APNVYSLPFLVQTNDPRVENNLYP--FVFLNVDGFLFIFANN--RAILFDYVN 228 (535)
Q Consensus 156 L~dG~vyvvGG~~~~~~E~y-P~~~--~~~w~~~~~l~~~~~~~~~~~~yp--~~~~~~dG~ifv~gg~--~~~~yDp~t 228 (535)
-+||+.++++..+. .+-.| .... ...+.... ...++ +.+..++|+..+.|.. .+.+||+.+
T Consensus 343 sp~~~~ll~~~~d~-~~~~w~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 343 SPNGKYLLSASLDR-TLKLWDLRSGKSVGTYTGHS-----------NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCCcEEEEecCCC-eEEEEEccCCcceeeecccC-----------CcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 36777777776553 33333 2210 00010000 00011 1223567888777764 577888887
Q ss_pred Ce
Q 009420 229 NK 230 (535)
Q Consensus 229 ~~ 230 (535)
..
T Consensus 411 ~~ 412 (456)
T KOG0266|consen 411 GG 412 (456)
T ss_pred cc
Confidence 44
No 104
>PRK04792 tolB translocation protein TolB; Provisional
Probab=71.71 E-value=79 Score=34.04 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=55.1
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
..+.++|..+++.+++..... .....+..+||+.+++.....+...+.++|.. +.+++.+.. ...+..+.+.-+
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~---~g~~~~Lt~--~g~~~~~~~~Sp 359 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA---SGKVSRLTF--EGEQNLGGSITP 359 (448)
T ss_pred eEEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEEec--CCCCCcCeeECC
Confidence 357788999999888764221 11223456799866665443445678888987 677776541 223333445667
Q ss_pred CCcEEEEcCccCCeeEEE
Q 009420 158 DGRIIIIGGRRQFNYEFY 175 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~y 175 (535)
||+.+++.........+|
T Consensus 360 DG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 360 DGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred CCCEEEEEEecCCceEEE
Confidence 887776655433333343
No 105
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=71.58 E-value=1.2e+02 Score=30.67 Aligned_cols=203 Identities=14% Similarity=0.122 Sum_probs=102.1
Q ss_pred eeEEEECCCCCEE---ECc---cccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCC--ccccc
Q 009420 79 HSVEYSVLTNEFR---PLF---VQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLG--ARRWY 150 (535)
Q Consensus 79 ~~~~yDp~t~~w~---~~~---~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~--~~R~y 150 (535)
...+|+..+..-+ ++. ..+..+-++.-++.|+.|+..-|. .++-.+|-. +.+=+. ... .+- -
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD----~TCalWDie---~g~~~~--~f~GH~gD-V 189 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD----MTCALWDIE---TGQQTQ--VFHGHTGD-V 189 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC----ceEEEEEcc---cceEEE--EecCCccc-E
Confidence 4578888866333 222 234444445556767777766665 456666665 332111 000 000 1
Q ss_pred ceEEEec-CCcEEEEcCccCCeeEEEeCCCCCCee-eeccccccCCccccCCCcceEEEeeCCcEEEEecC--eEEEEEC
Q 009420 151 ATDHILP-DGRIIIIGGRRQFNYEFYPKNGAPNVY-SLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANN--RAILFDY 226 (535)
Q Consensus 151 ~s~~~L~-dG~vyvvGG~~~~~~E~yP~~~~~~w~-~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~--~~~~yDp 226 (535)
.+....+ +++.||.||.+.. ..+|..... ... .++ -...|. | .+.-.|+|.-|+.|.. .+.+||.
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~-aklWD~R~~-~c~qtF~--ghesDI----N---sv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKS-AKLWDVRSG-QCVQTFE--GHESDI----N---SVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EEEecCCCCCCeEEecccccc-eeeeeccCc-ceeEeec--cccccc----c---eEEEccCCCeeeecCCCceeEEEee
Confidence 1233334 8999999998753 234422111 111 111 111121 1 2344578999988864 4679999
Q ss_pred CCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCC
Q 009420 227 VNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPT 306 (535)
Q Consensus 227 ~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~ 306 (535)
+.++-..... +. .-..+. .++.+. ..|+++.+|..+. +|+..|.-. ..
T Consensus 259 RaD~~~a~ys--~~--~~~~gi--tSv~FS--------~SGRlLfagy~d~----------------~c~vWDtlk--~e 306 (343)
T KOG0286|consen 259 RADQELAVYS--HD--SIICGI--TSVAFS--------KSGRLLFAGYDDF----------------TCNVWDTLK--GE 306 (343)
T ss_pred cCCcEEeeec--cC--cccCCc--eeEEEc--------ccccEEEeeecCC----------------ceeEeeccc--cc
Confidence 9987553222 11 123221 233332 4799999986441 344444221 00
Q ss_pred eeee-cCCCCceeceeEEccCCeEEEEcCC
Q 009420 307 WVLE-TMPQPRVMGDMTLLPNGNVLLINGA 335 (535)
Q Consensus 307 W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~ 335 (535)
=.-. .-+..|...= -+-|||.-+..|-.
T Consensus 307 ~vg~L~GHeNRvScl-~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 307 RVGVLAGHENRVSCL-GVSPDGMAVATGSW 335 (343)
T ss_pred eEEEeeccCCeeEEE-EECCCCcEEEecch
Confidence 0011 3355666543 45688887777654
No 106
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.21 E-value=92 Score=31.75 Aligned_cols=97 Identities=20% Similarity=0.318 Sum_probs=52.6
Q ss_pred CCcEEEEe---cCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccc
Q 009420 210 DGFLFIFA---NNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKG 286 (535)
Q Consensus 210 dG~ifv~g---g~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~ 286 (535)
++.+.+|+ |.-..+||+.+.+-...+.+ |. .|.|- |-++..+ +|+.+..==.+ +
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~--gRHFy--GHg~fs~---------dG~~LytTEnd---~------ 72 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PP--GRHFY--GHGVFSP---------DGRLLYTTEND---Y------ 72 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CC--CCEEe--cCEEEcC---------CCCEEEEeccc---c------
Confidence 45566666 34578999999876544443 32 36653 5566543 55555442211 1
Q ss_pred cccccCCceEEEEecCCCCCeeee-cCC-CCceeceeEEccCC-eEEEEcC
Q 009420 287 VFVAALNTCARIKITDPTPTWVLE-TMP-QPRVMGDMTLLPNG-NVLLING 334 (535)
Q Consensus 287 ~~~pa~~s~e~~d~~~~~~~W~~~-~m~-~~R~~~~~v~lpdG-~I~vvGG 334 (535)
.....-+.+||.. ..++.. ..+ ..-.-|....+||| ++.|.+|
T Consensus 73 --~~g~G~IgVyd~~---~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 73 --ETGRGVIGVYDAA---RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred --CCCcEEEEEEECc---CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 1122344556654 344443 322 33344677889999 6666665
No 107
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=71.13 E-value=1.2e+02 Score=30.52 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhhcccc-cccCCCceEEcccCCCccee--EEEEeeCCeEEEEecC
Q 009420 6 FIVLLFQLILCSHRIV-TDAAGGGWQLLQKSIGISSM--HMQLLNNDRVVMFDRS 57 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~g~W~~l~~~~~~~~~--~~~~~~~gkv~v~gg~ 57 (535)
.+.|+.|+++|+.|+. .....+.|..+. +++...- -++.-...+.+++|+.
T Consensus 10 avlvl~fav~~v~~s~~p~~ap~p~~~ve-lp~~s~~l~ia~~~~g~~gwlVg~r 63 (339)
T COG4447 10 AVLVLGFAVICVLCSAVPLIAPNPWTDVE-LPTLSPTLDIAFTESGSHGWLVGGR 63 (339)
T ss_pred HHHHHhHHhheeccccccccCCCcceeee-ccccCcccceeEeecCcceEEEcCc
Confidence 4567777888885444 566667888753 3433322 2222235577788864
No 108
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=71.11 E-value=6.6 Score=40.59 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=38.4
Q ss_pred EccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecCCCC
Q 009420 323 LLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGSNPH 397 (535)
Q Consensus 323 ~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG~~~ 397 (535)
--|+|+.++.|+.+. ++-+||+.|. + .+..+.--+..-.+....|||+.++.|+-.+
T Consensus 123 fsp~g~~l~tGsGD~-------------TvR~WD~~Te---T--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 123 FSPTGSRLVTGSGDT-------------TVRLWDLDTE---T--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred ecCCCceEEecCCCc-------------eEEeeccCCC---C--cceeecCCccEEEEEEECCCcchhhccccCC
Confidence 347899999987541 6789999997 2 2222222233334556689999999998654
No 109
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=70.87 E-value=1.1e+02 Score=30.09 Aligned_cols=125 Identities=11% Similarity=0.180 Sum_probs=63.7
Q ss_pred eeEEEECCCCCEEECcccccccccccee-cCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceec------CCCC---ccc
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAV-RPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEI------DGLG---ARR 148 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~-l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~------~~m~---~~R 148 (535)
...++|.++++.+..-.-+.-+-++.+. -.++.|+ .|+. | ..++++|.+ +.+-..+ +++. ..|
T Consensus 137 ~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~E-D--GtvRvWd~k---t~k~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 137 VIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SGAE-D--GTVRVWDTK---TQKHVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred EEEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ecCC-C--ccEEEEecc---ccceeEEeccccChhhcCcccCc
Confidence 4678999999987654333333222211 2355554 3443 3 357888877 4444332 1222 345
Q ss_pred ccceEEEecCCcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEe-cCeEEEEE
Q 009420 149 WYATDHILPDGRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFA-NNRAILFD 225 (535)
Q Consensus 149 ~y~s~~~L~dG~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~g-g~~~~~yD 225 (535)
|-.+.+ .|-.-+|.||-..- .+| +... .-..+|+... -+.+...+..|.+.| |+.+..|.
T Consensus 210 wigala--~~edWlvCGgGp~l--slwhLrsse--~t~vfpipa~-----------v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 210 WIGALA--VNEDWLVCGGGPKL--SLWHLRSSE--STCVFPIPAR-----------VHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred eeEEEe--ccCceEEecCCCce--eEEeccCCC--ceEEEecccc-----------eeEeeeecceEEEeccccceeeee
Confidence 543333 36788899885432 333 3221 1123343211 122334466677777 67777665
Q ss_pred CC
Q 009420 226 YV 227 (535)
Q Consensus 226 p~ 227 (535)
..
T Consensus 273 l~ 274 (325)
T KOG0649|consen 273 LN 274 (325)
T ss_pred ec
Confidence 43
No 110
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=70.72 E-value=11 Score=39.09 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=37.8
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCC
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 131 (535)
.++.+||+.|.+=...-.-+..|-.+.+.-+||+.++.|-.+ .++.+|||+
T Consensus 137 ~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d---g~I~lwdpk 187 (480)
T KOG0271|consen 137 TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD---GSIRLWDPK 187 (480)
T ss_pred ceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccC---CeEEEecCC
Confidence 368999998875333333456666667788999999998653 579999998
No 111
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.75 E-value=1.6e+02 Score=31.34 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=38.3
Q ss_pred eeeecCCCCce-eceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCC-CCC-Ccccccceee
Q 009420 307 WVLETMPQPRV-MGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNP-STI-PRMYHSTAVL 383 (535)
Q Consensus 307 W~~~~m~~~R~-~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~-~~~-~R~yhs~a~L 383 (535)
|+..+++..+. -.+++...|++++++|... . +|-. ++.|++|+.... -.+ .-+| + +..
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--~--------------v~~s-~D~G~tW~~~~~~~~~~~~ly-~-v~f 378 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSG--I--------------LLRS-TDGGKSWKRDKGADNIAANLY-S-VKF 378 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCC--c--------------EEEe-CCCCcceeEccccCCCCccee-E-EEE
Confidence 34434443332 3334456688999988643 1 2221 355679998752 222 2233 2 223
Q ss_pred cCCCcEEEecCC
Q 009420 384 LRDGRVLVGGSN 395 (535)
Q Consensus 384 lpDG~V~v~GG~ 395 (535)
..+++.|+.|-+
T Consensus 379 ~~~~~g~~~G~~ 390 (398)
T PLN00033 379 FDDKKGFVLGND 390 (398)
T ss_pred cCCCceEEEeCC
Confidence 467899999864
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=67.52 E-value=40 Score=36.32 Aligned_cols=142 Identities=18% Similarity=0.202 Sum_probs=75.9
Q ss_pred CCcEEEEecCeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCccccccccccc
Q 009420 210 DGFLFIFANNRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFV 289 (535)
Q Consensus 210 dG~ifv~gg~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~ 289 (535)
.-++|.-|-..+-+||...-.=...+..++-..+-+|- -++-|+| +++-+++||..
T Consensus 431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyi--RSckL~p---------dgrtLivGGea------------- 486 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYI--RSCKLLP---------DGRTLIVGGEA------------- 486 (705)
T ss_pred cceeEecCCCeEEEeeccCCCCCCccccccccCcccce--eeeEecC---------CCceEEecccc-------------
Confidence 33555555556778887643100012222221123443 3566665 89999999963
Q ss_pred ccCCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeec
Q 009420 290 AALNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQ 368 (535)
Q Consensus 290 pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~ 368 (535)
.++.++|+..++..-..+ +-..+-+++= ++-||-||...-=.+ | .+.+||-... +- +
T Consensus 487 ---stlsiWDLAapTprikaeltssapaCyAL-a~spDakvcFsccsd-G------------nI~vwDLhnq---~~--V 544 (705)
T KOG0639|consen 487 ---STLSIWDLAAPTPRIKAELTSSAPACYAL-AISPDAKVCFSCCSD-G------------NIAVWDLHNQ---TL--V 544 (705)
T ss_pred ---ceeeeeeccCCCcchhhhcCCcchhhhhh-hcCCccceeeeeccC-C------------cEEEEEcccc---ee--e
Confidence 345567777644443333 3333555554 456788886643221 2 4678888765 21 2
Q ss_pred CCCCCCcccccceeecCCCcEEEecCCCC
Q 009420 369 NPSTIPRMYHSTAVLLRDGRVLVGGSNPH 397 (535)
Q Consensus 369 ~~~~~~R~yhs~a~LlpDG~V~v~GG~~~ 397 (535)
...+----..|+..+..||.=+=+||-++
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCcc
Confidence 11111112235666778898777777544
No 113
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=67.03 E-value=50 Score=34.73 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=64.4
Q ss_pred eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEE
Q 009420 47 NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIR 126 (535)
Q Consensus 47 ~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~ 126 (535)
+||-|..-||.+ +...+||..|+.=.-.-.-+..--.+..+.+||..+++||.+ +.++
T Consensus 313 ~DGSL~~tGGlD-------------------~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D---nt~k 370 (459)
T KOG0272|consen 313 PDGSLAATGGLD-------------------SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD---NTCK 370 (459)
T ss_pred CCCceeeccCcc-------------------chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC---CcEE
Confidence 588888888765 124689998876433222232223355678999999999874 5788
Q ss_pred EEcCCCCCCCCceecCCCCcccccceEEEe--cCCcEEEEcCccCCeeEEEeCCCCCCeeeeccc
Q 009420 127 SFVPCNDESCDWKEIDGLGARRWYATDHIL--PDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFL 189 (535)
Q Consensus 127 ~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L--~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l 189 (535)
++|.. ..+ ++-.|+..+.--+-+.. ..|+.++..++++ ++.+|... .|..+..|
T Consensus 371 VWDLR---~r~--~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~-t~kiWs~~---~~~~~ksL 426 (459)
T KOG0272|consen 371 VWDLR---MRS--ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN-TVKIWSTR---TWSPLKSL 426 (459)
T ss_pred Eeeec---ccc--cceecccccchhhheEecccCCeEEEEcccCc-ceeeecCC---Ccccchhh
Confidence 88876 221 12233322221111111 1578888888875 45666221 45544444
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=66.51 E-value=1e+02 Score=32.99 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=66.4
Q ss_pred eeEEEECCCCCEEECcccc---ccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEE
Q 009420 79 HSVEYSVLTNEFRPLFVQS---NVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHI 155 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~---~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~ 155 (535)
....||..+.+.+++..+. ..+-.--.+-+++.++++-|.. ..+.+.... ++.|...=.|+- + -...+.
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---G~I~lLhak---T~eli~s~KieG-~-v~~~~f 352 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---GHIHLLHAK---TKELITSFKIEG-V-VSDFTF 352 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---ceEEeehhh---hhhhhheeeecc-E-EeeEEE
Confidence 4578999999999886432 1111111234578888887764 345666666 667753323321 2 112333
Q ss_pred ecCCcEEEEcCccCCeeEEE-eCCC--CCCeeeeccccccCCccccCCCcc-eEEEeeCCcEEEEecCe--EEEEECCC
Q 009420 156 LPDGRIIIIGGRRQFNYEFY-PKNG--APNVYSLPFLVQTNDPRVENNLYP-FVFLNVDGFLFIFANNR--AILFDYVN 228 (535)
Q Consensus 156 L~dG~vyvvGG~~~~~~E~y-P~~~--~~~w~~~~~l~~~~~~~~~~~~yp-~~~~~~dG~ifv~gg~~--~~~yDp~t 228 (535)
-.||+.+++.|.++ .+.+| -..+ ..+|..-- ..+- +.+..++|..|+.|..+ +-+||-++
T Consensus 353 sSdsk~l~~~~~~G-eV~v~nl~~~~~~~rf~D~G------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 353 SSDSKELLASGGTG-EVYVWNLRQNSCLHRFVDDG------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ecCCcEEEEEcCCc-eEEEEecCCcceEEEEeecC------------ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 35775554444333 23333 2211 01121100 1111 23445799988888764 67898654
No 115
>PRK03629 tolB translocation protein TolB; Provisional
Probab=65.07 E-value=1.4e+02 Score=31.89 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=51.9
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
.+..+|+.+++.+++.... .........+||+.+++.+..++...+.++|.. +.+++.+.... .......-+|
T Consensus 312 ~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~---~g~~~~Lt~~~---~~~~p~~SpD 384 (429)
T PRK03629 312 QVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA---TGGVQVLTDTF---LDETPSIAPN 384 (429)
T ss_pred eEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECC---CCCeEEeCCCC---CCCCceECCC
Confidence 4566788888777664221 122234466899888776554445678889988 77777665321 1123344579
Q ss_pred CcEEEEcCccC
Q 009420 159 GRIIIIGGRRQ 169 (535)
Q Consensus 159 G~vyvvGG~~~ 169 (535)
|+.++..+.++
T Consensus 385 G~~i~~~s~~~ 395 (429)
T PRK03629 385 GTMVIYSSSQG 395 (429)
T ss_pred CCEEEEEEcCC
Confidence 98888766543
No 116
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=61.31 E-value=43 Score=29.67 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=45.6
Q ss_pred CCCceecC-----CCcc-ccccCCeEEEEEEecCccccceEEEEEEecCCccccCCCCcc--eEEeeee--eeeecCCc-
Q 009420 428 LRPTIVLP-----ESQF-TLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQR--LLVLASD--TVTKLGNS- 496 (535)
Q Consensus 428 ~RP~i~~~-----p~~~-~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~~~~TH~~~~~qR--~v~L~~~--~~~~~g~~- 496 (535)
..|+|... |... .+..|+.|.++....+....+..+|.+ -.-|-.|+-...-+ ..+..|. .....|..
T Consensus 13 ~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d~~~i~si~VeI-H~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (132)
T PF15418_consen 13 EKPVITLNEIGAFPENCKVATRGDDIHFEADISDNSAIKSIKVEI-HNNFDHHTHSTEAGECEKPWVFEQDYDIYGGKKN 91 (132)
T ss_pred CCCEEEeeecccCCCCCeEEecCCcEEEEEEEEcccceeEEEEEE-ecCcCcccccccccccccCcEEEEEEcccCCccc
Confidence 47777765 2211 267799998887766544223333333 22333343332211 1111111 10011111
Q ss_pred -ceEEEEEcCCCCCcCCCcceEEEEEc
Q 009420 497 -GYEIVVNSPGSGNLAPSGYYLLFVVH 522 (535)
Q Consensus 497 -~~~~~~~~P~~~~~~ppG~ymlf~~~ 522 (535)
.-...+.+|.+ |+||-|-+++..
T Consensus 92 ~~~h~~i~IPa~---a~~G~YH~~i~V 115 (132)
T PF15418_consen 92 YDFHEHIDIPAD---APAGDYHFMITV 115 (132)
T ss_pred EeEEEeeeCCCC---CCCcceEEEEEE
Confidence 23456789988 999999877753
No 117
>PRK04792 tolB translocation protein TolB; Provisional
Probab=60.84 E-value=2.4e+02 Score=30.30 Aligned_cols=138 Identities=16% Similarity=0.092 Sum_probs=70.4
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
...++|..+++-+.+...... -......+||+-+++-...++...+.++|.. +.+.+.+..-. -.....+.-+|
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~---tg~~~~lt~~~--~~~~~p~wSpD 316 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIA---TKALTRITRHR--AIDTEPSWHPD 316 (448)
T ss_pred EEEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECC---CCCeEECccCC--CCccceEECCC
Confidence 577889998887766533211 1234566899855553333445678888987 67766654311 01112334457
Q ss_pred CcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEec-----CeEEEEECCCCeE
Q 009420 159 GRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN-----NRAILFDYVNNKV 231 (535)
Q Consensus 159 G~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg-----~~~~~yDp~t~~W 231 (535)
|+-+++........++| ... ..++..+.. .. ..+......|||+.+++.. ....++|..+++.
T Consensus 317 G~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt~-~g--------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 317 GKSLIFTSERGGKPQIYRVNLA-SGKVSRLTF-EG--------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCEEEEEECCCCCceEEEEECC-CCCEEEEec-CC--------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 76554433222223444 322 123322211 00 0111234578887655532 2456678877765
Q ss_pred E
Q 009420 232 V 232 (535)
Q Consensus 232 ~ 232 (535)
.
T Consensus 387 ~ 387 (448)
T PRK04792 387 Q 387 (448)
T ss_pred E
Confidence 4
No 118
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=60.67 E-value=1.6e+02 Score=30.58 Aligned_cols=92 Identities=28% Similarity=0.328 Sum_probs=50.4
Q ss_pred CeEEEEECCCCeEEEecCCCCCCCCCCCCCCCceE-eecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEE
Q 009420 219 NRAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAV-LLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCAR 297 (535)
Q Consensus 219 ~~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v-~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~ 297 (535)
..+-|||...|+.. |.|+.+=++| .|.+.| .-.+++.||.+. .+-.
T Consensus 215 k~VKCwDLe~nkvI-----------R~YhGHlS~V~~L~lhP------Tldvl~t~grDs----------------t~Rv 261 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVI-----------RHYHGHLSGVYCLDLHP------TLDVLVTGGRDS----------------TIRV 261 (460)
T ss_pred CeeEEEechhhhhH-----------HHhccccceeEEEeccc------cceeEEecCCcc----------------eEEE
Confidence 35889999988743 6665322333 233332 467888888762 2334
Q ss_pred EEecCCCCCeeee--cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCC
Q 009420 298 IKITDPTPTWVLE--TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNI 360 (535)
Q Consensus 298 ~d~~~~~~~W~~~--~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~ 360 (535)
.|+.+-...-... ..+..+.+...+ |++|+- |...+ ++-+||-..+
T Consensus 262 WDiRtr~~V~~l~GH~~~V~~V~~~~~---dpqvit--~S~D~------------tvrlWDl~ag 309 (460)
T KOG0285|consen 262 WDIRTRASVHVLSGHTNPVASVMCQPT---DPQVIT--GSHDS------------TVRLWDLRAG 309 (460)
T ss_pred eeecccceEEEecCCCCcceeEEeecC---CCceEE--ecCCc------------eEEEeeeccC
Confidence 5554311112221 456666666532 788753 32211 5678888776
No 119
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=60.43 E-value=1.4e+02 Score=29.40 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=55.8
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
..+.+||..|++....--.+...-.+..+--+..+++.|+++ .+++.||-. +++-+.++-+.+.+-.-+...+
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD---~s~r~wDCR---S~s~ePiQildea~D~V~Si~v- 153 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD---SSVRLWDCR---SRSFEPIQILDEAKDGVSSIDV- 153 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecccc---ceeEEEEcc---cCCCCccchhhhhcCceeEEEe-
Confidence 468899999987543211111111111122245677777774 689999988 8888888888888876666776
Q ss_pred CCcEEEEcCccCCeeEEE
Q 009420 158 DGRIIIIGGRRQFNYEFY 175 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~y 175 (535)
.+.- |++|+...++..|
T Consensus 154 ~~he-IvaGS~DGtvRty 170 (307)
T KOG0316|consen 154 AEHE-IVAGSVDGTVRTY 170 (307)
T ss_pred cccE-EEeeccCCcEEEE
Confidence 3444 4456554556666
No 120
>PRK05137 tolB translocation protein TolB; Provisional
Probab=59.47 E-value=1.9e+02 Score=30.77 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=48.4
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
....++|..+++.+++..... ........+||+-+++.....+...+.++|.. ..+.+.+..- ...+.....-+
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~---g~~~~~lt~~--~~~~~~~~~Sp 343 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD---GSNPRRISFG--GGRYSTPVWSP 343 (435)
T ss_pred ceEEEEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECC---CCCeEEeecC--CCcccCeEECC
Confidence 356778999998887753221 11224466899877765544445678888876 5444444321 12233344556
Q ss_pred CCcEEEEcC
Q 009420 158 DGRIIIIGG 166 (535)
Q Consensus 158 dG~vyvvGG 166 (535)
||+.+++..
T Consensus 344 dG~~ia~~~ 352 (435)
T PRK05137 344 RGDLIAFTK 352 (435)
T ss_pred CCCEEEEEE
Confidence 887766643
No 121
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=58.21 E-value=72 Score=27.59 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=37.0
Q ss_pred cccCCeEEEEEEecCccccceEEEEEEe-cCCccccCCCCcceEEeeeeee-----------eecCCcceEEEEEcCCCC
Q 009420 441 LKYKQKFRVRFSASGPVALNKVTVTMVA-PSFNTHSFSMNQRLLVLASDTV-----------TKLGNSGYEIVVNSPGSG 508 (535)
Q Consensus 441 ~~~g~~~~v~~~~~~~~~~~~~~~~l~~-~~~~TH~~~~~qR~v~L~~~~~-----------~~~g~~~~~~~~~~P~~~ 508 (535)
+..||.|+|++....+-.....++.|+- .|. --+..-+- .+.|++... ..+| +.-+|.|..|+|
T Consensus 29 VRRGQ~F~i~l~f~r~~~~~~d~l~l~~~~G~-~P~~~~gT-~~~~~~~~~~~~~~W~a~v~~~~~-~~~tv~V~spa~- 104 (118)
T PF00868_consen 29 VRRGQPFTITLRFNRPFDPSKDQLSLEFETGP-NPSESKGT-KVVFPVSSSLDSSSWSARVESQDG-NSVTVSVTSPAN- 104 (118)
T ss_dssp EETTSEEEEEEEESSS--TTTEEEEEEEEESS-S--TTTTS-EEEEEECSSS-TSSSEEEEEEEET-TEEEEEEE--TT-
T ss_pred EECCCEEEEEEEEcCCcCCCCcEEEEEEEEec-ccccCCCc-EEEEEEccCCCCCCEEEEEEecCC-CEEEEEEECCCC-
Confidence 7889999888876554223444454442 221 11222222 333333211 1122 346777888887
Q ss_pred CcCCCcceEEEEE
Q 009420 509 NLAPSGYYLLFVV 521 (535)
Q Consensus 509 ~~~ppG~ymlf~~ 521 (535)
||=|.|-|-|-
T Consensus 105 --A~VG~y~l~v~ 115 (118)
T PF00868_consen 105 --APVGRYKLSVE 115 (118)
T ss_dssp --S--EEEEEEEE
T ss_pred --CceEEEEEEEE
Confidence 88899999774
No 122
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=58.17 E-value=2.4e+02 Score=29.43 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=68.9
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
..+.+||..+++.+.+...... ..+....+||+-+++....++...+.++|.. +...+.+...... .......+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~---~~~~~~l~~~~~~--~~~~~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD---GKQLTRLTNGPGI--DTEPSWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEECCCCCccEEEEECC---CCCEEECCCCCCC--CCCEEECC
Confidence 3577899999877666532211 1224567898755443332344578888987 5555555422111 11223345
Q ss_pred CCcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecC-----eEEEEECCCCe
Q 009420 158 DGRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANN-----RAILFDYVNNK 230 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~-----~~~~yDp~t~~ 230 (535)
||+-+++.........+| ... ...+..+.. . . ...-.....+||+.+++... ...++|..++.
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~l~~--~--~-----~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDAD-GGEVRRLTF--R--G-----GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECC-CCCEEEeec--C--C-----CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 776544433222222333 322 112222211 0 0 00112345678886666432 46788888765
Q ss_pred EE
Q 009420 231 VV 232 (535)
Q Consensus 231 W~ 232 (535)
+.
T Consensus 358 ~~ 359 (417)
T TIGR02800 358 ER 359 (417)
T ss_pred eE
Confidence 54
No 123
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=57.84 E-value=91 Score=37.62 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=35.4
Q ss_pred ceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCC-----------Ccccccc-eEEEecCCcEEEEcCcc
Q 009420 104 GAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGL-----------GARRWYA-TDHILPDGRIIIIGGRR 168 (535)
Q Consensus 104 ~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m-----------~~~R~y~-s~~~L~dG~vyvvGG~~ 168 (535)
.++..||.|||.-.. ...|++||+. +...+.++.. ...-..+ +++.-.||++||.-..+
T Consensus 809 vavd~dG~LYVADs~---N~rIrviD~~---tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 809 VLCAKDGQIYVADSY---NHKIKKLDPA---TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred eeEeCCCcEEEEECC---CCEEEEEECC---CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 345578999998654 3689999997 5554433211 0000122 44555689999976544
No 124
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=57.47 E-value=54 Score=33.06 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=37.7
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCC--CC--CCeEEEEcCCCCCCCCceecCC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFN--DG--EKKIRSFVPCNDESCDWKEIDG 143 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~--~g--~~~v~~ydp~~~~~~~W~~~~~ 143 (535)
.+..||+.+.+|..+.....---. .....++.-+++||.. .+ ...+-.||.. +.+|+.++.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~-~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~---~~~w~~~~~ 81 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVT-DLQWASNNQLLVGGNFTLNGTNSSNLATYDFK---NQTWSSLGG 81 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEE-EEEEecCCEEEEEEeeEECCCCceeEEEEecC---CCeeeecCC
Confidence 477999999999988643211111 1222344444444442 12 3567899999 899988875
No 125
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=56.41 E-value=3e+02 Score=29.97 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=18.8
Q ss_pred EeeCCcEEEEec-CeEEEEECCCCe--EEE
Q 009420 207 LNVDGFLFIFAN-NRAILFDYVNNK--VVK 233 (535)
Q Consensus 207 ~~~dG~ifv~gg-~~~~~yDp~t~~--W~~ 233 (535)
+..+|+||+... ..+..+|.++++ |..
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRY 87 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhcee
Confidence 345888888753 567888988754 764
No 126
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=56.28 E-value=38 Score=34.00 Aligned_cols=88 Identities=10% Similarity=0.056 Sum_probs=54.3
Q ss_pred EcccCCCcceeEEEEee--CCe--EEEEecCCCCCC-CCCCCCCccccCCCCceeEEEECCCCCEEEC--cccccccccc
Q 009420 31 LLQKSIGISSMHMQLLN--NDR--VVMFDRSDFGPS-NLSLPPGKCLKTDCTAHSVEYSVLTNEFRPL--FVQSNVWCSS 103 (535)
Q Consensus 31 ~l~~~~~~~~~~~~~~~--~gk--v~v~gg~~~~~~-~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~--~~~~~~~c~~ 103 (535)
.+.+.|..|..|..-+. .|| ++++||...-+. +.+..+=. .-.||.-.+.+.|++-+..+.- +.+.+.+...
T Consensus 80 LvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWN-sVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFH 158 (337)
T PF03089_consen 80 LVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWN-SVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFH 158 (337)
T ss_pred ecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcc-eeccCCCeEEEEeccccccccccchhhcCCeEEE
Confidence 34456788888876653 444 667888643221 11100000 1245677788899998887654 4556666555
Q ss_pred ceecCCCcEEEEcCCC
Q 009420 104 GAVRPDGVLIQTGGFN 119 (535)
Q Consensus 104 ~~~l~dG~l~v~GG~~ 119 (535)
.+..-+..||++||+.
T Consensus 159 vslar~D~VYilGGHs 174 (337)
T PF03089_consen 159 VSLARNDCVYILGGHS 174 (337)
T ss_pred EEEecCceEEEEccEE
Confidence 5555689999999974
No 127
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=55.25 E-value=2.5e+02 Score=29.37 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=40.1
Q ss_pred eeEEEECCCCCE-EECccccccccccceecCCCc-EEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEe
Q 009420 79 HSVEYSVLTNEF-RPLFVQSNVWCSSGAVRPDGV-LIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHIL 156 (535)
Q Consensus 79 ~~~~yDp~t~~w-~~~~~~~~~~c~~~~~l~dG~-l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L 156 (535)
++.+.|.+|++- ..++...+. .....+-+||+ +|+.+. + ..+.++|+. +.+ .++....+..-.+.+.-
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~r--d--g~vsviD~~---~~~--~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAP-HAGLKFSPDGRYLYVANR--D--GTVSVIDLA---TGK--VVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTE-EEEEE-TT-SSEEEEEET--T--SEEEEEETT---SSS--EEEEEE-SSEEEEEEE-
T ss_pred EEEEEECCCCeEEEEEcCCCCc-eeEEEecCCCCEEEEEcC--C--CeEEEEECC---ccc--EEEEEecCCCcceEEEc
Confidence 567778877664 333333222 22233457887 777653 2 478999987 443 34444444443445555
Q ss_pred cCCcEEEEcCc
Q 009420 157 PDGRIIIIGGR 167 (535)
Q Consensus 157 ~dG~vyvvGG~ 167 (535)
.||+.++++..
T Consensus 87 ~DG~~~~v~n~ 97 (369)
T PF02239_consen 87 PDGKYVYVANY 97 (369)
T ss_dssp -TTTEEEEEEE
T ss_pred CCCCEEEEEec
Confidence 67776665543
No 128
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=54.91 E-value=2.9e+02 Score=29.52 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=66.7
Q ss_pred cceEEEeeCCcEEEEecC--eEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCc
Q 009420 202 YPFVFLNVDGFLFIFANN--RAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGA 279 (535)
Q Consensus 202 yp~~~~~~dG~ifv~gg~--~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~ 279 (535)
|-.+..=|||.||..|-. .+.+||.+...- ....|+. . |..--+... .+|--++++-.+
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~Fpgh---t----~~vk~i~Fs------ENGY~Lat~add--- 410 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKFPGH---T----GPVKAISFS------ENGYWLATAADD--- 410 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccCCCC---C----CceeEEEec------cCceEEEEEecC---
Confidence 555667789999999864 467899887652 3333431 1 111111111 244444443221
Q ss_pred ccccccccccccCCceEEEEecCCCCCeeeecCCCCceeceeEEc-cCCeEEEEcCCCCCCCCcccCCCCccccEEEeCC
Q 009420 280 YEQAEKGVFVAALNTCARIKITDPTPTWVLETMPQPRVMGDMTLL-PNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPD 358 (535)
Q Consensus 280 ~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~~m~~~R~~~~~v~l-pdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~ 358 (535)
.++-++|+..-. ......++... ...++.+ +.|+.++++|.+ ..+.+|+-.
T Consensus 411 -------------~~V~lwDLRKl~-n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~-------------l~Vy~~~k~ 462 (506)
T KOG0289|consen 411 -------------GSVKLWDLRKLK-NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSD-------------LQVYICKKK 462 (506)
T ss_pred -------------CeEEEEEehhhc-ccceeeccccc-cceeEEEcCCCCeEEeecce-------------eEEEEEecc
Confidence 236677776421 12222333332 1222222 348888888654 267889999
Q ss_pred CCCCCceeecCCCCC
Q 009420 359 NIPGSRFDLQNPSTI 373 (535)
Q Consensus 359 t~~g~~Wt~~~~~~~ 373 (535)
+. +|+.+...+.
T Consensus 463 ~k---~W~~~~~~~~ 474 (506)
T KOG0289|consen 463 TK---SWTEIKELAD 474 (506)
T ss_pred cc---cceeeehhhh
Confidence 99 9998866543
No 129
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=54.77 E-value=43 Score=31.56 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=49.3
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
.+.+||.+...-..+.. ........-++|+.+++||.......+++||.. ++..+....... --.++--+|
T Consensus 84 ~v~lyd~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~-----~~~~i~~~~~~~-~t~~~WsPd 154 (194)
T PF08662_consen 84 KVTLYDVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR-----KKKKISTFEHSD-ATDVEWSPD 154 (194)
T ss_pred ccEEEcCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECC-----CCEEeeccccCc-EEEEEEcCC
Confidence 47899997544444432 111234466899999999975433579999975 455555443332 124455568
Q ss_pred CcEEEEcCc
Q 009420 159 GRIIIIGGR 167 (535)
Q Consensus 159 G~vyvvGG~ 167 (535)
|+.++....
T Consensus 155 Gr~~~ta~t 163 (194)
T PF08662_consen 155 GRYLATATT 163 (194)
T ss_pred CCEEEEEEe
Confidence 988887543
No 130
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=53.27 E-value=1.2e+02 Score=24.38 Aligned_cols=75 Identities=21% Similarity=0.141 Sum_probs=47.3
Q ss_pred CCceecC-CCccccccCCeEEEEEEecCccccceEEEEEEecCCccccCCCCcceEEeeeeeeeecCCcceEEEEEcCCC
Q 009420 429 RPTIVLP-ESQFTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSGYEIVVNSPGS 507 (535)
Q Consensus 429 RP~i~~~-p~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~~P~~ 507 (535)
.|.|.+. |.. -..|++++|+-+.-+.. ..+|.+ + -...++... + ...+++++|..
T Consensus 2 ~P~I~~i~P~~--g~~G~~VtI~G~gFg~~---~~~V~~---g-----------~~~a~v~s~--s---dt~I~~~vP~~ 57 (81)
T cd02849 2 TPLIGHVGPMM--GKAGNTVTISGEGFGSA---PGTVYF---G-----------TTAATVISW--S---DTRIVVTVPNV 57 (81)
T ss_pred CCEEeeEcCCC--CCCCCEEEEEEECCCCC---CcEEEE---C-----------CEEeEEEEE--C---CCEEEEEeCCC
Confidence 4788886 666 67899888875533211 122221 1 133445442 2 25899999953
Q ss_pred CCcCCCcceEEEEEc-CCcCCccEE
Q 009420 508 GNLAPSGYYLLFVVH-QDVPSEGIW 531 (535)
Q Consensus 508 ~~~~ppG~ymlf~~~-~gvPS~a~~ 531 (535)
++|.|-++|.. +|.=|.+.-
T Consensus 58 ----~aG~~~V~V~~~~G~~Sn~~~ 78 (81)
T cd02849 58 ----PAGNYDVTVKTADGATSNGYN 78 (81)
T ss_pred ----CCceEEEEEEeCCCcccCcEe
Confidence 79999999997 688776543
No 131
>PRK04922 tolB translocation protein TolB; Provisional
Probab=51.76 E-value=2.9e+02 Score=29.34 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=48.0
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
.+..+|..+++.+.+... ...+.....-+||+.+++....++...+.++|.. +.+.+.+..-. +......-+|
T Consensus 317 ~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~---~g~~~~Lt~~~---~~~~p~~spd 389 (433)
T PRK04922 317 QIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS---TGSVRTLTPGS---LDESPSFAPN 389 (433)
T ss_pred eEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECC---CCCeEECCCCC---CCCCceECCC
Confidence 466778888888776522 2233344566799877765333334578899987 66666554221 1223345568
Q ss_pred CcEEEEcC
Q 009420 159 GRIIIIGG 166 (535)
Q Consensus 159 G~vyvvGG 166 (535)
|+.+++..
T Consensus 390 G~~i~~~s 397 (433)
T PRK04922 390 GSMVLYAT 397 (433)
T ss_pred CCEEEEEE
Confidence 88666543
No 132
>PRK04922 tolB translocation protein TolB; Provisional
Probab=51.59 E-value=3.2e+02 Score=28.99 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=48.3
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
...++|+.+++.+++...... .......+||+.+++.....+...+..+|.. +.+++.+.. ..++....+.-+|
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~-~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~---~g~~~~lt~--~g~~~~~~~~SpD 346 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGI-DTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS---GGSAERLTF--QGNYNARASVSPD 346 (433)
T ss_pred eEEEEECCCCCeEECccCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECC---CCCeEEeec--CCCCccCEEECCC
Confidence 577889999988777532111 1223467899877766543444567778876 566655431 1233334455568
Q ss_pred CcEEEEc
Q 009420 159 GRIIIIG 165 (535)
Q Consensus 159 G~vyvvG 165 (535)
|+.+++.
T Consensus 347 G~~Ia~~ 353 (433)
T PRK04922 347 GKKIAMV 353 (433)
T ss_pred CCEEEEE
Confidence 8766654
No 133
>PRK03629 tolB translocation protein TolB; Provisional
Probab=49.76 E-value=3.5e+02 Score=28.81 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=73.5
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
...++|..+++-+.+...... .....+-+||+.+++-...++...+.++|.. +.+.+.+..-.. ........+|
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~---tg~~~~lt~~~~--~~~~~~wSPD 297 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA---SGQIRQVTDGRS--NNTEPTWFPD 297 (429)
T ss_pred EEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECC---CCCEEEccCCCC--CcCceEECCC
Confidence 567889988887776533221 2234567899866654333444578899987 666665542211 1123445568
Q ss_pred CcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEec-----CeEEEEECCCCeE
Q 009420 159 GRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN-----NRAILFDYVNNKV 231 (535)
Q Consensus 159 G~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg-----~~~~~yDp~t~~W 231 (535)
|+-+++.........+| .... .....+... . .........|||+.+++.. ....++|..++++
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~-g~~~~lt~~-~--------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNING-GAPQRITWE-G--------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCC-CCeEEeecC-C--------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 87555443322223455 2221 122111110 0 0011234578998665532 2467789988887
Q ss_pred E
Q 009420 232 V 232 (535)
Q Consensus 232 ~ 232 (535)
.
T Consensus 368 ~ 368 (429)
T PRK03629 368 Q 368 (429)
T ss_pred E
Confidence 6
No 134
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=49.16 E-value=2.3e+02 Score=26.51 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=21.5
Q ss_pred EEEeeCCcEEEEecCeEEEEECCCCe
Q 009420 205 VFLNVDGFLFIFANNRAILFDYVNNK 230 (535)
Q Consensus 205 ~~~~~dG~ifv~gg~~~~~yDp~t~~ 230 (535)
++...+|++|.+-|...++||..+.+
T Consensus 153 a~~~~~~~~yfF~g~~y~~~d~~~~~ 178 (194)
T cd00094 153 AFRWLDGYYYFFKGDQYWRFDPRSKE 178 (194)
T ss_pred eEEeCCCcEEEEECCEEEEEeCccce
Confidence 34445699999999999999998776
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=48.39 E-value=3.1e+02 Score=27.87 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=50.2
Q ss_pred eeEEEECCCCCEEECccc-cccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 79 HSVEYSVLTNEFRPLFVQ-SNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~-~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
.+..||..+++-..+..- ...+|-... ..--.+|.||++ ++++++||+ . +-.....++..+-| ++.+
T Consensus 76 ~vr~~Dln~~~~~~igth~~~i~ci~~~--~~~~~vIsgsWD---~~ik~wD~R---~-~~~~~~~d~~kkVy-~~~v-- 143 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEGIRCIEYS--YEVGCVISGSWD---KTIKFWDPR---N-KVVVGTFDQGKKVY-CMDV-- 143 (323)
T ss_pred eEEEEEecCCcceeeccCCCceEEEEee--ccCCeEEEcccC---ccEEEEecc---c-cccccccccCceEE-EEec--
Confidence 477899988887776532 233454332 233466788885 789999998 3 22222334444544 3333
Q ss_pred CCcEEEEcCccCCeeEEE
Q 009420 158 DGRIIIIGGRRQFNYEFY 175 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~y 175 (535)
.|..+|+|+.+. .+-+|
T Consensus 144 ~g~~LvVg~~~r-~v~iy 160 (323)
T KOG1036|consen 144 SGNRLVVGTSDR-KVLIY 160 (323)
T ss_pred cCCEEEEeecCc-eEEEE
Confidence 477888888764 34455
No 136
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=48.19 E-value=3.4e+02 Score=28.25 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=53.0
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
.+..+|..+++.+.+....... ......+||+.+++.....+...+.++|.. +.++..+..- ..+......-+|
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~~-~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~---~~~~~~l~~~--~~~~~~~~~spd 332 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGID-TEPSWSPDGKSIAFTSDRGGSPQIYMMDAD---GGEVRRLTFR--GGYNASPSWSPD 332 (417)
T ss_pred cEEEEECCCCCEEECCCCCCCC-CCEEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEeecC--CCCccCeEECCC
Confidence 4678899998888775322111 122345788866665443444578888887 6666655421 222334455568
Q ss_pred CcEEEEcCccCCeeEEE
Q 009420 159 GRIIIIGGRRQFNYEFY 175 (535)
Q Consensus 159 G~vyvvGG~~~~~~E~y 175 (535)
|+.+++.........+|
T Consensus 333 g~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCEEEEEEccCCceEEE
Confidence 88887766554333443
No 137
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.44 E-value=2.3e+02 Score=28.97 Aligned_cols=106 Identities=19% Similarity=0.308 Sum_probs=66.4
Q ss_pred eEEEEe-e-CCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEEC-cc-ccccccccceecCCCcEEEE-
Q 009420 41 MHMQLL-N-NDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPL-FV-QSNVWCSSGAVRPDGVLIQT- 115 (535)
Q Consensus 41 ~~~~~~-~-~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~-~~-~~~~~c~~~~~l~dG~l~v~- 115 (535)
.|.++. + ...+++++..- | ....+||+.+++-... .. ....|...+++.+||+++.+
T Consensus 7 gH~~a~~p~~~~avafaRRP----------G--------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytT 68 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRP----------G--------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTT 68 (305)
T ss_pred ccceeeCCCCCeEEEEEeCC----------C--------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEe
Confidence 355554 5 67888888742 3 3678999999986543 33 34557767778889986655
Q ss_pred cCCC-CCCCeEEEEcCCCCCCCCceecCCCCc-ccccceEEEecCCcEEEE--cCcc
Q 009420 116 GGFN-DGEKKIRSFVPCNDESCDWKEIDGLGA-RRWYATDHILPDGRIIII--GGRR 168 (535)
Q Consensus 116 GG~~-~g~~~v~~ydp~~~~~~~W~~~~~m~~-~R~y~s~~~L~dG~vyvv--GG~~ 168 (535)
=... .+.-.+-+||.. +....+.+.+. +---|-+..++||+-+|| ||..
T Consensus 69 End~~~g~G~IgVyd~~----~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAA----RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred ccccCCCcEEEEEEECc----CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence 3322 234568899985 45666655443 233345667889955555 6653
No 138
>PRK02889 tolB translocation protein TolB; Provisional
Probab=46.09 E-value=3.9e+02 Score=28.35 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=68.5
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
...+||..+++-+.+..... .-.+.+.-+||+.+++....++...+..+|.. ....+.+..-. . ........+|
T Consensus 221 ~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---~~~~~~lt~~~-~-~~~~~~wSpD 294 (427)
T PRK02889 221 VVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD---GSGLRRLTQSS-G-IDTEPFFSPD 294 (427)
T ss_pred EEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECC---CCCcEECCCCC-C-CCcCeEEcCC
Confidence 57889998887666642221 11234567899766654433445567777776 44544443211 1 1112345568
Q ss_pred CcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecC-----eEEEEECCCCeE
Q 009420 159 GRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANN-----RAILFDYVNNKV 231 (535)
Q Consensus 159 G~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~-----~~~~yDp~t~~W 231 (535)
|+-+++........++| +... .....+.+ .. ..+ ......|||+..++... ...++|..+++.
T Consensus 295 G~~l~f~s~~~g~~~Iy~~~~~~-g~~~~lt~-~g------~~~--~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 295 GRSIYFTSDRGGAPQIYRMPASG-GAAQRVTF-TG------SYN--TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CCEEEEEecCCCCcEEEEEECCC-CceEEEec-CC------CCc--CceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 87555432222223455 3221 12221111 00 001 12345678875544321 466788877765
Q ss_pred E
Q 009420 232 V 232 (535)
Q Consensus 232 ~ 232 (535)
.
T Consensus 365 ~ 365 (427)
T PRK02889 365 T 365 (427)
T ss_pred E
Confidence 4
No 139
>PRK00178 tolB translocation protein TolB; Provisional
Probab=45.56 E-value=3.9e+02 Score=28.18 Aligned_cols=83 Identities=10% Similarity=0.076 Sum_probs=48.4
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
...+||..+++.+++..... ........+||+-+++.....+...+..+|.. +.+++.+... .+.......-+|
T Consensus 268 ~Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~---~g~~~~lt~~--~~~~~~~~~Spd 341 (430)
T PRK00178 268 EIYVMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN---GGRAERVTFV--GNYNARPRLSAD 341 (430)
T ss_pred eEEEEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEeecC--CCCccceEECCC
Confidence 56788999999888753221 11223456788866655443445678888887 6666655421 222223344567
Q ss_pred CcEEEEcCc
Q 009420 159 GRIIIIGGR 167 (535)
Q Consensus 159 G~vyvvGG~ 167 (535)
|+.+++-..
T Consensus 342 g~~i~~~~~ 350 (430)
T PRK00178 342 GKTLVMVHR 350 (430)
T ss_pred CCEEEEEEc
Confidence 766665443
No 140
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=45.25 E-value=54 Score=25.72 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=31.9
Q ss_pred ccCCeEEEEEEe--cCccccceEEEEEEecCCccccCCCCcceEEeeeeeeeecCC-cceEEEEEcCCCCCcCCCcceEE
Q 009420 442 KYKQKFRVRFSA--SGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGN-SGYEIVVNSPGSGNLAPSGYYLL 518 (535)
Q Consensus 442 ~~g~~~~v~~~~--~~~~~~~~~~~~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~-~~~~~~~~~P~~~~~~ppG~yml 518 (535)
..|++++++++. .+.......+++|-.|.-.+ .....++.-.|+- |. -...++|++|.+ ++||-|.|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~~~~~~~l~p------G~s~~~~~~V~vp~~---a~~G~y~v 71 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSASPASVPSLPP------GESVTVTFTVTVPAD---AAPGTYTV 71 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----EEEEE--B-T------TSEEEEEEEEEE-TT-----SEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCCccccccCCC------CCEEEEEEEEECCCC---CCCceEEE
Confidence 356666555443 33332355677777776655 2222333333332 21 135777888887 78999988
Q ss_pred EEE
Q 009420 519 FVV 521 (535)
Q Consensus 519 f~~ 521 (535)
-+.
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 141
>PRK05137 tolB translocation protein TolB; Provisional
Probab=44.48 E-value=4.1e+02 Score=28.17 Aligned_cols=139 Identities=15% Similarity=0.103 Sum_probs=70.2
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
..+.++|+.+++.+.+..... ...+...-+||+.+++....++...+.++|.. +.+...+..-.. .......-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---~~~~~~Lt~~~~--~~~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR---SGTTTRLTDSPA--IDTSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECC---CCceEEccCCCC--ccCceeEcC
Confidence 367899999998887753322 12234567899866554333445678888987 555555543211 111234456
Q ss_pred CCcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEec-----CeEEEEECCCCe
Q 009420 158 DGRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN-----NRAILFDYVNNK 230 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg-----~~~~~yDp~t~~ 230 (535)
||+-+++........++| .... .....+.. . ...+......|||+..++.. ....++|+.++.
T Consensus 300 DG~~i~f~s~~~g~~~Iy~~d~~g-~~~~~lt~--~-------~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 300 DGSQIVFESDRSGSPQLYVMNADG-SNPRRISF--G-------GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCEEEEEECCCCCCeEEEEECCC-CCeEEeec--C-------CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 887555433222222344 3321 12222111 0 01122234567887555432 246677876655
Q ss_pred EE
Q 009420 231 VV 232 (535)
Q Consensus 231 W~ 232 (535)
..
T Consensus 370 ~~ 371 (435)
T PRK05137 370 ER 371 (435)
T ss_pred eE
Confidence 43
No 142
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=44.27 E-value=3.8e+02 Score=27.69 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=73.1
Q ss_pred EeeCCcEEEEe-cCeEEEEECCCCe--EEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCccccc
Q 009420 207 LNVDGFLFIFA-NNRAILFDYVNNK--VVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQA 283 (535)
Q Consensus 207 ~~~dG~ifv~g-g~~~~~yDp~t~~--W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~ 283 (535)
+.-||++|+.. +.....+|+.+.+ |..... .. .... ..-++ +.+|+||+-.. +
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~--~~---~~~~--~~~~~---------~~~G~i~~g~~-~------- 120 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLL--GA---VAQL--SGPIL---------GSDGKIYVGSW-D------- 120 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCc--Cc---ceec--cCceE---------EeCCeEEEecc-c-------
Confidence 45588898863 3357789999876 763221 10 0100 11111 12678776322 1
Q ss_pred ccccccccCCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCC
Q 009420 284 EKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPG 362 (535)
Q Consensus 284 ~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g 362 (535)
....++|..+....|+.. +.. .+.... .+..|++||+.... + .+.+.|+++. .
T Consensus 121 ---------g~~y~ld~~~G~~~W~~~~~~~-~~~~~~-~v~~~~~v~~~s~~--g------------~~~al~~~tG-~ 174 (370)
T COG1520 121 ---------GKLYALDASTGTLVWSRNVGGS-PYYASP-PVVGDGTVYVGTDD--G------------HLYALNADTG-T 174 (370)
T ss_pred ---------ceEEEEECCCCcEEEEEecCCC-eEEecC-cEEcCcEEEEecCC--C------------eEEEEEccCC-c
Confidence 135677775556779886 443 455444 44569999986411 1 3466676654 1
Q ss_pred CceeecCCC-CCCcccccceeecCCCcEEEecC
Q 009420 363 SRFDLQNPS-TIPRMYHSTAVLLRDGRVLVGGS 394 (535)
Q Consensus 363 ~~Wt~~~~~-~~~R~yhs~a~LlpDG~V~v~GG 394 (535)
.+|+.-.+. ...+.+ +... .-+|.||+..-
T Consensus 175 ~~W~~~~~~~~~~~~~-~~~~-~~~~~vy~~~~ 205 (370)
T COG1520 175 LKWTYETPAPLSLSIY-GSPA-IASGTVYVGSD 205 (370)
T ss_pred EEEEEecCCccccccc-cCce-eecceEEEecC
Confidence 268743322 223333 3222 45888888755
No 143
>PRK01029 tolB translocation protein TolB; Provisional
Probab=44.27 E-value=1.3e+02 Score=32.26 Aligned_cols=61 Identities=13% Similarity=-0.012 Sum_probs=39.2
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecC
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEID 142 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~ 142 (535)
..+.+||+.+++.+.+... ..........+||+.+++-....+...+.++|.. ..+.+.+.
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~---~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI---TKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEee
Confidence 4578899999999888633 2223334566799876654433344677888877 55555553
No 144
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=44.18 E-value=12 Score=31.25 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=13.9
Q ss_pred CCcchhHHHHHHH--HHhhccccc
Q 009420 1 MGQYSFIVLLFQL--ILCSHRIVT 22 (535)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~ 22 (535)
|..|.||.|.+++ +||.++.++
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 7788888776664 455554443
No 145
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=43.50 E-value=2.2e+02 Score=28.07 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=29.6
Q ss_pred eeEEEECCCCCEEEC-cccccccc------c-cceecCCCcEEEEcCCCCCCCeEEEEcCC
Q 009420 79 HSVEYSVLTNEFRPL-FVQSNVWC------S-SGAVRPDGVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~-~~~~~~~c------~-~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 131 (535)
.+.+||.+|.+-..+ .+..+.-| . -+++..|..++|-||- ....+|+..
T Consensus 179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----p~lslwhLr 235 (325)
T KOG0649|consen 179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----PKLSLWHLR 235 (325)
T ss_pred cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----CceeEEecc
Confidence 588999999986654 23222111 1 1344458889999885 344555544
No 146
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=43.37 E-value=1.7e+02 Score=29.12 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=55.8
Q ss_pred eEEEEe-eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECc-cccccccccceecCCCcEEEEcCC
Q 009420 41 MHMQLL-NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLF-VQSNVWCSSGAVRPDGVLIQTGGF 118 (535)
Q Consensus 41 ~~~~~~-~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~-~~~~~~c~~~~~l~dG~l~v~GG~ 118 (535)
-++... .+|.+|---|.- | ...+..||+.|++..... ...+-|..+.+.+ +++||..= +
T Consensus 47 TQGL~~~~~g~LyESTG~y----------G-------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLT-W 107 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLY----------G-------QSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLT-W 107 (264)
T ss_dssp EEEEEEEETTEEEEEECST----------T-------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEE-S
T ss_pred CccEEecCCCEEEEeCCCC----------C-------cEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEE-e
Confidence 345555 688888666532 2 146789999999986554 4446677776555 88998873 1
Q ss_pred CCCCCeEEEEcCCCCCCCCceecCC--CCcccccceEEEecCCcEEEEcCcc
Q 009420 119 NDGEKKIRSFVPCNDESCDWKEIDG--LGARRWYATDHILPDGRIIIIGGRR 168 (535)
Q Consensus 119 ~~g~~~v~~ydp~~~~~~~W~~~~~--m~~~R~y~s~~~L~dG~vyvvGG~~ 168 (535)
-....-+||+. +...+.. .+..=| +.|.- +.++++.-|++
T Consensus 108 --k~~~~f~yd~~-----tl~~~~~~~y~~EGW--GLt~d-g~~Li~SDGS~ 149 (264)
T PF05096_consen 108 --KEGTGFVYDPN-----TLKKIGTFPYPGEGW--GLTSD-GKRLIMSDGSS 149 (264)
T ss_dssp --SSSEEEEEETT-----TTEEEEEEE-SSS----EEEEC-SSCEEEE-SSS
T ss_pred --cCCeEEEEccc-----cceEEEEEecCCcce--EEEcC-CCEEEEECCcc
Confidence 13567889986 3444443 333345 44432 34555555543
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=42.65 E-value=4.6e+02 Score=28.21 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=39.7
Q ss_pred eecCCCc-EEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCC--cccccceEEEecCCcEEEEcCccC
Q 009420 105 AVRPDGV-LIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLG--ARRWYATDHILPDGRIIIIGGRRQ 169 (535)
Q Consensus 105 ~~l~dG~-l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~--~~R~y~s~~~L~dG~vyvvGG~~~ 169 (535)
.+.++|. .++++|.. +-...||-. +.+-+++.+|. +.+.-..-.+-+|+..+++-|.++
T Consensus 264 ~f~p~G~~~i~~s~rr---ky~ysyDle---~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G 325 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRR---KYLYSYDLE---TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG 325 (514)
T ss_pred eecCCCceEEEecccc---eEEEEeecc---ccccccccCCCCcccchhheeEecCCCCeEEEcccCc
Confidence 3567998 88888873 567889998 77777776542 122223334556888888888764
No 148
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.62 E-value=2.2e+02 Score=32.54 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=58.3
Q ss_pred eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEE
Q 009420 47 NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIR 126 (535)
Q Consensus 47 ~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~ 126 (535)
+.|.|++.|+.+ .....+|+.+|++-..+-.-+..--++-++-++|.+++.|-++ ++|+
T Consensus 445 ~sGelV~AG~~d------------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD---kTVR 503 (893)
T KOG0291|consen 445 PSGELVCAGAQD------------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD---KTVR 503 (893)
T ss_pred CCCCEEEeeccc------------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc---ceEE
Confidence 358888888754 1247799999998877655443333334466789999999885 7899
Q ss_pred EEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEc
Q 009420 127 SFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIG 165 (535)
Q Consensus 127 ~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvG 165 (535)
++|-- .+|..+.++....---+.+.-+||+=+++-
T Consensus 504 iW~if----~s~~~vEtl~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 504 IWDIF----SSSGTVETLEIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEee----ccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence 88875 455555444333222233333455544443
No 149
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=39.96 E-value=1.9e+02 Score=31.85 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=40.8
Q ss_pred eeEEEECCCCC--EEECcc-cccc----cc---ccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecC-CCCcc
Q 009420 79 HSVEYSVLTNE--FRPLFV-QSNV----WC---SSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEID-GLGAR 147 (535)
Q Consensus 79 ~~~~yDp~t~~--w~~~~~-~~~~----~c---~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~-~m~~~ 147 (535)
.+..+|.+|++ |+.-.. .... .| ..+..+.+++||+.... ..+..+|..+ ++-.|+.-. ++...
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d----g~l~ALDa~T-Gk~~W~~~~~~~~~~ 154 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD----ARLVALDAKT-GKVVWSKKNGDYKAG 154 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC----CEEEEEECCC-CCEEeeccccccccc
Confidence 36778888775 654321 1111 12 12345557888874332 4578888872 133576432 22211
Q ss_pred cccceEEEecCCcEEEE
Q 009420 148 RWYATDHILPDGRIIII 164 (535)
Q Consensus 148 R~y~s~~~L~dG~vyvv 164 (535)
....+.-++.+|+||+-
T Consensus 155 ~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 155 YTITAAPLVVKGKVITG 171 (527)
T ss_pred ccccCCcEEECCEEEEe
Confidence 11112334447888774
No 150
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=39.34 E-value=1.4e+02 Score=32.98 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=50.1
Q ss_pred CcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCC--------ceeceeEEccCCeEEEEcCCC
Q 009420 266 AAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQP--------RVMGDMTLLPNGNVLLINGAG 336 (535)
Q Consensus 266 ~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~--------R~~~~~v~lpdG~I~vvGG~~ 336 (535)
+++||+.... ..+.++|..+....|+.. ..+.. ....+ +++-+++||+... +
T Consensus 69 ~g~vyv~s~~-----------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t~-d 129 (527)
T TIGR03075 69 DGVMYVTTSY-----------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGTL-D 129 (527)
T ss_pred CCEEEEECCC-----------------CcEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEcC-C
Confidence 7888886442 235677777656778865 32211 11122 3445888887432 1
Q ss_pred CCCCCcccCCCCccccEEEeCCCCCCCceeecC-CCCCCcccccceeecCCCcEEEec
Q 009420 337 KGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQN-PSTIPRMYHSTAVLLRDGRVLVGG 393 (535)
Q Consensus 337 ~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~-~~~~~R~yhs~a~LlpDG~V~v~G 393 (535)
+ .+.++|.++.+ ..|+.-. ..... .....+-++.+++||+..
T Consensus 130 -g------------~l~ALDa~TGk-~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 130 -A------------RLVALDAKTGK-VVWSKKNGDYKAG-YTITAAPLVVKGKVITGI 172 (527)
T ss_pred -C------------EEEEEECCCCC-EEeeccccccccc-ccccCCcEEECCEEEEee
Confidence 1 46788987762 2586432 11111 111233344588888864
No 151
>PRK02889 tolB translocation protein TolB; Provisional
Probab=38.97 E-value=3.9e+02 Score=28.38 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=44.9
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
.....+|..+++.+++.... .........+||+.+++.....+...+..+|.. +.+.+.+.. ...+......-+
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~---~g~~~~lt~--~g~~~~~~~~Sp 337 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS---GGAAQRVTF--TGSYNTSPRISP 337 (427)
T ss_pred ceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC---CCceEEEec--CCCCcCceEECC
Confidence 45666777777776664321 112233467899876665433344566777765 444444431 122222344556
Q ss_pred CCcEEEEcCc
Q 009420 158 DGRIIIIGGR 167 (535)
Q Consensus 158 dG~vyvvGG~ 167 (535)
||+.++....
T Consensus 338 DG~~Ia~~s~ 347 (427)
T PRK02889 338 DGKLLAYISR 347 (427)
T ss_pred CCCEEEEEEc
Confidence 8876665443
No 152
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=38.37 E-value=4.4e+02 Score=26.91 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=68.1
Q ss_pred eeEEEECCC-CCEEECccc---cccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecC----CCCccccc
Q 009420 79 HSVEYSVLT-NEFRPLFVQ---SNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEID----GLGARRWY 150 (535)
Q Consensus 79 ~~~~yDp~t-~~w~~~~~~---~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~----~m~~~R~y 150 (535)
.+.+|+.+. ++..+-++. ...+|. +.--||..+.+||.+ +++.+||.. +++=..++ +...-||-
T Consensus 51 tVR~wevq~~g~~~~ka~~~~~~PvL~v--~WsddgskVf~g~~D---k~~k~wDL~---S~Q~~~v~~Hd~pvkt~~wv 122 (347)
T KOG0647|consen 51 TVRIWEVQNSGQLVPKAQQSHDGPVLDV--CWSDDGSKVFSGGCD---KQAKLWDLA---SGQVSQVAAHDAPVKTCHWV 122 (347)
T ss_pred ceEEEEEecCCcccchhhhccCCCeEEE--EEccCCceEEeeccC---CceEEEEcc---CCCeeeeeecccceeEEEEe
Confidence 478888766 355443321 233442 244588888888874 678999998 77665554 23334553
Q ss_pred ceEEEecCCcEEEEcCccCCeeEEE-eCCCCCCee-eeccccccCCccccCCCcceEEEeeCCcEEEEecCeEEEEECCC
Q 009420 151 ATDHILPDGRIIIIGGRRQFNYEFY-PKNGAPNVY-SLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNRAILFDYVN 228 (535)
Q Consensus 151 ~s~~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~w~-~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~~~~yDp~t 228 (535)
... +.-.++=|+..++..+| ++.. ... .+. |+.+. +.....||.+++.. ++++..+|+.+.
T Consensus 123 ~~~-----~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~-LPeRv--Ya~Dv~~pm~vVat-------a~r~i~vynL~n 185 (347)
T KOG0647|consen 123 PGM-----NYQCLVTGSWDKTLKFWDTRSS--NPVATLQ-LPERV--YAADVLYPMAVVAT-------AERHIAVYNLEN 185 (347)
T ss_pred cCC-----CcceeEecccccceeecccCCC--Ceeeeee-cccee--eehhccCceeEEEe-------cCCcEEEEEcCC
Confidence 321 12234456667788888 5542 221 121 11111 01234566554443 345667788765
Q ss_pred Ce
Q 009420 229 NK 230 (535)
Q Consensus 229 ~~ 230 (535)
..
T Consensus 186 ~~ 187 (347)
T KOG0647|consen 186 PP 187 (347)
T ss_pred Cc
Confidence 54
No 153
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=38.16 E-value=2e+02 Score=29.92 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=38.2
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 131 (535)
.+.+|....+.-.++-.-++..|.++-+++||+-++.|=. + .++.+|||+
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-d--gti~~Wn~k 220 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-D--GTIIVWNPK 220 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-C--ceEEEEecC
Confidence 4677776665555555557888999999999999998754 2 578999998
No 154
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=37.12 E-value=67 Score=33.85 Aligned_cols=81 Identities=20% Similarity=0.137 Sum_probs=47.7
Q ss_pred EEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCce-ecCCCCcccccceEEEecCC
Q 009420 81 VEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWK-EIDGLGARRWYATDHILPDG 159 (535)
Q Consensus 81 ~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~-~~~~m~~~R~y~s~~~L~dG 159 (535)
.+||..|++=--+..-+..--...++-+||.|.+.||.+ .-.+++|.. +..-. .++. .-+--.++..-+||
T Consensus 286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD---~~~RvWDlR---tgr~im~L~g--H~k~I~~V~fsPNG 357 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD---SLGRVWDLR---TGRCIMFLAG--HIKEILSVAFSPNG 357 (459)
T ss_pred hhcccccchhhHhhcccccccceeEecCCCceeeccCcc---chhheeecc---cCcEEEEecc--cccceeeEeECCCc
Confidence 356666554322222344433445677899999999985 234567766 33321 1221 11223467777899
Q ss_pred cEEEEcCccC
Q 009420 160 RIIIIGGRRQ 169 (535)
Q Consensus 160 ~vyvvGG~~~ 169 (535)
..++.||.++
T Consensus 358 y~lATgs~Dn 367 (459)
T KOG0272|consen 358 YHLATGSSDN 367 (459)
T ss_pred eEEeecCCCC
Confidence 9999999875
No 155
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.10 E-value=1.3e+02 Score=33.94 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=52.4
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccc-cceEEEec
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRW-YATDHILP 157 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~-y~s~~~L~ 157 (535)
++.+||..++.-..+-.-+..--.+.++-++|+.++.|+.. ..+.+||-. ..+ .+..|..... -.+...-.
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed---~~I~iWDl~---~~~--~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED---GLIKIWDLA---NGS--LVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC---CcEEEEEcC---CCc--chhhhhcccCceeEEEEec
Confidence 57889988887655543333323334455799999999874 468888876 322 1122221111 12333344
Q ss_pred CCcEEEEcCccCCeeEEE
Q 009420 158 DGRIIIIGGRRQFNYEFY 175 (535)
Q Consensus 158 dG~vyvvGG~~~~~~E~y 175 (535)
||.|+|+||.++ ++.+|
T Consensus 630 dg~vLasgg~Dn-sV~lW 646 (707)
T KOG0263|consen 630 DGNVLASGGADN-SVRLW 646 (707)
T ss_pred CCCEEEecCCCC-eEEEE
Confidence 999999999875 34444
No 156
>PRK01742 tolB translocation protein TolB; Provisional
Probab=35.49 E-value=5.6e+02 Score=27.12 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=34.2
Q ss_pred EEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecCCC
Q 009420 322 TLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGSNP 396 (535)
Q Consensus 322 v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG~~ 396 (535)
...|||+.+++.+.. .+.++|..+. +++.+.... ..++ ....|||+.++.++..
T Consensus 339 ~~SpDG~~ia~~~~~--------------~i~~~Dl~~g---~~~~lt~~~---~~~~-~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 339 QISADGKTLVMINGD--------------NVVKQDLTSG---STEVLSSTF---LDES-PSISPNGIMIIYSSTQ 392 (429)
T ss_pred cCCCCCCEEEEEcCC--------------CEEEEECCCC---CeEEecCCC---CCCC-ceECCCCCEEEEEEcC
Confidence 457898876665432 2456898888 776554221 1233 3467999999888753
No 157
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=34.72 E-value=79 Score=30.53 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=31.4
Q ss_pred cceEEEEEcCCCCCcCCCcceEEEEEcCCcCCccEEEEeC
Q 009420 496 SGYEIVVNSPGSGNLAPSGYYLLFVVHQDVPSEGIWVHVQ 535 (535)
Q Consensus 496 ~~~~~~~~~P~~~~~~ppG~ymlf~~~~gvPS~a~~v~i~ 535 (535)
|-+++++++|.+ +++|.+=|.+..+|+.|.+..|.|+
T Consensus 179 Gl~QvNv~vP~~---~~~G~~~v~itvgg~~S~~~~i~v~ 215 (215)
T TIGR03437 179 GLYQVNVRVPAG---LATGAVPVVITVGGVTSNAVTIAVQ 215 (215)
T ss_pred ceEEEEEEcCCC---CCCCcEeEEEEECCccCCcEEEEeC
Confidence 358999999977 4789888888889999999888775
No 158
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=34.65 E-value=5.5e+02 Score=26.77 Aligned_cols=52 Identities=2% Similarity=-0.008 Sum_probs=35.3
Q ss_pred CCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCe--EEEEcCCCCCCCCcccCCCCccccEEEeCCCC
Q 009420 292 LNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGN--VLLINGAGKGTAGWELGRDPVLAPVVYRPDNI 360 (535)
Q Consensus 292 ~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~--I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~ 360 (535)
.+.+..+|.. +++.. ..+.++.-++.++-+||+ +|+.++.. + .+.++|..+.
T Consensus 278 ~~~V~ViD~~----t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-~------------~VsViD~~t~ 332 (352)
T TIGR02658 278 SRFLFVVDAK----TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD-K------------TLYIFDAETG 332 (352)
T ss_pred CCEEEEEECC----CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC-C------------cEEEEECcCC
Confidence 4577888864 66766 555555555667889987 56666643 1 4689998876
No 159
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=34.53 E-value=34 Score=21.74 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=13.6
Q ss_pred ccccceeecCCCcEEEecCCCC
Q 009420 376 MYHSTAVLLRDGRVLVGGSNPH 397 (535)
Q Consensus 376 ~yhs~a~LlpDG~V~v~GG~~~ 397 (535)
.+|+++ |.-||+||.-|.+..
T Consensus 8 ~~ht~a-l~~~g~v~~wG~n~~ 28 (30)
T PF13540_consen 8 GYHTCA-LTSDGEVYCWGDNNY 28 (30)
T ss_dssp SSEEEE-EE-TTEEEEEE--TT
T ss_pred CCEEEE-EEcCCCEEEEcCCcC
Confidence 468655 568999999998754
No 160
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=34.27 E-value=2.7e+02 Score=29.66 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=46.8
Q ss_pred eeEEEECCCCC-EEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEec
Q 009420 79 HSVEYSVLTNE-FRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILP 157 (535)
Q Consensus 79 ~~~~yDp~t~~-w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~ 157 (535)
.+.+||.+..+ +..+......--..-.+-..|..++++|.. -.|.+|+-. +.+|+++..+...-.-.+.+.+.
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~---l~Vy~~~k~---~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD---LQVYICKKK---TKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce---eEEEEEecc---cccceeeehhhhcccccceeeec
Confidence 37788887654 222221111111222344568999999763 356777777 88999987665444333455555
Q ss_pred CCcEEEEcCc
Q 009420 158 DGRIIIIGGR 167 (535)
Q Consensus 158 dG~vyvvGG~ 167 (535)
+...|+..|.
T Consensus 486 ~~aq~l~s~s 495 (506)
T KOG0289|consen 486 EHAQYLASTS 495 (506)
T ss_pred ccceEEeecc
Confidence 5555554443
No 161
>PRK00178 tolB translocation protein TolB; Provisional
Probab=33.42 E-value=5.9e+02 Score=26.76 Aligned_cols=138 Identities=17% Similarity=0.121 Sum_probs=70.4
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
...++|..+++-+.+...... -......+||+-+++.-..++...+.++|.. +.+.+.+..-.. .......-+|
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~-~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~---~~~~~~lt~~~~--~~~~~~~spD 297 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGL-NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA---SRQLSRVTNHPA--IDTEPFWGKD 297 (430)
T ss_pred EEEEEECCCCCEEEccCCCCC-cCCeEECCCCCEEEEEEccCCCceEEEEECC---CCCeEEcccCCC--CcCCeEECCC
Confidence 578899999988877532211 1124466799866654333344678889998 667666543111 1112334457
Q ss_pred CcEEEEcCccCCeeEEE--eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEec-----CeEEEEECCCCeE
Q 009420 159 GRIIIIGGRRQFNYEFY--PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFAN-----NRAILFDYVNNKV 231 (535)
Q Consensus 159 G~vyvvGG~~~~~~E~y--P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg-----~~~~~yDp~t~~W 231 (535)
|+-+++.........+| .... .++..+... . ..+......+||+..++.. ....++|..++++
T Consensus 298 g~~i~f~s~~~g~~~iy~~d~~~-g~~~~lt~~-~--------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 298 GRTLYFTSDRGGKPQIYKVNVNG-GRAERVTFV-G--------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCEEEEEECCCCCceEEEEECCC-CCEEEeecC-C--------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 76444332222223344 3221 123222110 0 0111234567887555432 2356788887766
Q ss_pred E
Q 009420 232 V 232 (535)
Q Consensus 232 ~ 232 (535)
.
T Consensus 368 ~ 368 (430)
T PRK00178 368 R 368 (430)
T ss_pred E
Confidence 5
No 162
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.90 E-value=6.9e+02 Score=27.33 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=50.0
Q ss_pred eeEEEECCCCCEEECcccc-ccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCc---ccccceEE
Q 009420 79 HSVEYSVLTNEFRPLFVQS-NVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGA---RRWYATDH 154 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~-~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~---~R~y~s~~ 154 (535)
.+.+|+-.+++.+.+.... +.-| ....-.+|..+++|=.. ..+++||.. +++ ....|.. .|+ ++.
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vt-Sv~ws~~G~~LavG~~~---g~v~iwD~~---~~k--~~~~~~~~h~~rv--g~l 266 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVT-SVKWSPDGSHLAVGTSD---GTVQIWDVK---EQK--KTRTLRGSHASRV--GSL 266 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceE-EEEECCCCCEEEEeecC---CeEEEEehh---hcc--ccccccCCcCcee--EEE
Confidence 5677888888777776442 2222 22344689999998543 579999987 332 2334433 453 333
Q ss_pred EecCCcEEEEcCccCC
Q 009420 155 ILPDGRIIIIGGRRQF 170 (535)
Q Consensus 155 ~L~dG~vyvvGG~~~~ 170 (535)
.- ++.++..|..+..
T Consensus 267 aW-~~~~lssGsr~~~ 281 (484)
T KOG0305|consen 267 AW-NSSVLSSGSRDGK 281 (484)
T ss_pred ec-cCceEEEecCCCc
Confidence 33 6889998887753
No 163
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.56 E-value=2.3e+02 Score=29.74 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCCeEEEEcCCCCCCCCceec--C----CCCcccccceEEEecC--CcEEEEcCccCCeeEEE-eCCC
Q 009420 109 DGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEI--D----GLGARRWYATDHILPD--GRIIIIGGRRQFNYEFY-PKNG 179 (535)
Q Consensus 109 dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~--~----~m~~~R~y~s~~~L~d--G~vyvvGG~~~~~~E~y-P~~~ 179 (535)
+-.|+++||... .+.+++||...+ ...|+.- + .|..|-|-..+..|.+ .+.|+.+-... .+.+| |+.
T Consensus 160 ~p~Iva~GGke~-~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-qvR~YDt~~- 235 (412)
T KOG3881|consen 160 DPYIVATGGKEN-INELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH-QVRLYDTRH- 235 (412)
T ss_pred CCceEecCchhc-ccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce-eEEEecCcc-
Confidence 345777788642 466788887633 4567643 2 4678889878778865 56777654432 46788 664
Q ss_pred CCCee-eeccccccCCccccCCCcceEEEeeCCcEEEEecCe--EEEEECCCCe
Q 009420 180 APNVY-SLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANNR--AILFDYVNNK 230 (535)
Q Consensus 180 ~~~w~-~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~~--~~~yDp~t~~ 230 (535)
.+++. .++++.. --.+..+.|+|+..++|+.. ...||.++.+
T Consensus 236 qRRPV~~fd~~E~---------~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 236 QRRPVAQFDFLEN---------PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred cCcceeEeccccC---------cceeeeecCCCcEEEEecccchhheecccCce
Confidence 34443 3444321 12245677899988888864 4568887765
No 164
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=31.23 E-value=2.3e+02 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEeeCCcEEEEecC--eEEEEECCCCe
Q 009420 206 FLNVDGFLFIFANN--RAILFDYVNNK 230 (535)
Q Consensus 206 ~~~~dG~ifv~gg~--~~~~yDp~t~~ 230 (535)
-..|||+..+.|+. .+..||+++-+
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechhhh
Confidence 45679999998864 57889998754
No 165
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=30.98 E-value=41 Score=24.99 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=21.3
Q ss_pred eeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCC
Q 009420 320 DMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNI 360 (535)
Q Consensus 320 ~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~ 360 (535)
++++.+||||++.|-..... .+....+..|+|.-.
T Consensus 5 ~~~~q~DGkIlv~G~~~~~~------~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVDNSS------GNNDFVLARLNADGS 39 (55)
T ss_pred EEEECCCCcEEEEEEeecCC------CcccEEEEEECCCCC
Confidence 45778999999988543210 111234677877654
No 166
>PRK04043 tolB translocation protein TolB; Provisional
Probab=29.34 E-value=4.7e+02 Score=27.84 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=47.4
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPD 158 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~d 158 (535)
.+.++|+.+++-+.+..... ........+||+-+++.-..++...++++|.. +.+++.+..-.. ........+|
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~---~g~~~~LT~~~~--~d~~p~~SPD 287 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN---TKTLTQITNYPG--IDVNGNFVED 287 (419)
T ss_pred EEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECC---CCcEEEcccCCC--ccCccEECCC
Confidence 57889999998877764221 12223467899655443333445688999987 677777653321 1122344567
Q ss_pred Cc-EEEEc
Q 009420 159 GR-IIIIG 165 (535)
Q Consensus 159 G~-vyvvG 165 (535)
|+ |+.+.
T Consensus 288 G~~I~F~S 295 (419)
T PRK04043 288 DKRIVFVS 295 (419)
T ss_pred CCEEEEEE
Confidence 74 55443
No 167
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.08 E-value=6.5e+02 Score=25.84 Aligned_cols=134 Identities=17% Similarity=0.258 Sum_probs=69.0
Q ss_pred eeEEEECCCCCEEECcccccc---ccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCc--cc-ccce
Q 009420 79 HSVEYSVLTNEFRPLFVQSNV---WCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGA--RR-WYAT 152 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~---~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~--~R-~y~s 152 (535)
++.+||.+|+.--..-.-++. .|+. -+..+|++..-.+ ...+++|-. ..++.... +. ---+
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcst---HptQrLVvTsSrD---tTFRLWDFR-------eaI~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCST---HPTQRLVVTSSRD---TTFRLWDFR-------EAIQSVAVFQGHTDTVT 361 (481)
T ss_pred cceeeeeccCceeccccCcchhcccccc---CCcceEEEEeccC---ceeEeccch-------hhcceeeeeccccccee
Confidence 456888888876554433332 3443 3678999887543 344555532 01111111 00 0011
Q ss_pred EEEe-cCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEe--cCeEEEEECCCC
Q 009420 153 DHIL-PDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFA--NNRAILFDYVNN 229 (535)
Q Consensus 153 ~~~L-~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~g--g~~~~~yDp~t~ 229 (535)
.++. .|.+| +.|++..++.+|...+++.... .+ +.+ .+.| +..+...++|..+- ++++.+||...+
T Consensus 362 S~vF~~dd~v--VSgSDDrTvKvWdLrNMRsplA--TI--Rtd--S~~N---Rvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 362 SVVFNTDDRV--VSGSDDRTVKVWDLRNMRSPLA--TI--RTD--SPAN---RVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred EEEEecCCce--eecCCCceEEEeeeccccCcce--ee--ecC--Cccc---eeEeecCCceEEeccCCceEEEEecCCC
Confidence 2222 24443 5778878888884443333210 00 111 1111 34556667777764 578999999988
Q ss_pred eEEEecCCCCC
Q 009420 230 KVVKQYPAIPG 240 (535)
Q Consensus 230 ~W~~~~p~~p~ 240 (535)
+ ++.||-
T Consensus 431 R----laRlPr 437 (481)
T KOG0300|consen 431 R----LARLPR 437 (481)
T ss_pred c----cccCCc
Confidence 6 444553
No 168
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=28.95 E-value=4.4e+02 Score=26.85 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=48.5
Q ss_pred eeEEEECCCCCEEECc-cccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCcee---cCCCCcc-cccceE
Q 009420 79 HSVEYSVLTNEFRPLF-VQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKE---IDGLGAR-RWYATD 153 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~-~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~---~~~m~~~-R~y~s~ 153 (535)
.+.+|||....-.-.. .....+|.. ..|..+|+|+.. +.+.+||.. +..=-. -.++... | +.
T Consensus 117 ~ik~wD~R~~~~~~~~d~~kkVy~~~----v~g~~LvVg~~~---r~v~iyDLR---n~~~~~q~reS~lkyqtR---~v 183 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGTFDQGKKVYCMD----VSGNRLVVGTSD---RKVLIYDLR---NLDEPFQRRESSLKYQTR---CV 183 (323)
T ss_pred cEEEEeccccccccccccCceEEEEe----ccCCEEEEeecC---ceEEEEEcc---cccchhhhccccceeEEE---EE
Confidence 4677777652111111 122344432 367788888764 689999987 332110 1123322 3 45
Q ss_pred EEecCCcEEEEcCccCC-eeEEE-eC
Q 009420 154 HILPDGRIIIIGGRRQF-NYEFY-PK 177 (535)
Q Consensus 154 ~~L~dG~vyvvGG~~~~-~~E~y-P~ 177 (535)
+.++++.=|++|-.++. .+|++ +.
T Consensus 184 ~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 184 ALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEecCCCceEEEeecceEEEEccCCc
Confidence 67778888888877664 56777 54
No 169
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=28.77 E-value=2.2e+02 Score=34.49 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=42.5
Q ss_pred EeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc-----------ccc--ccccceecCCCc
Q 009420 45 LLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ-----------SNV--WCSSGAVRPDGV 111 (535)
Q Consensus 45 ~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~-----------~~~--~c~~~~~l~dG~ 111 (535)
+-++|+|||.+..+ ..+.+||+.++..+.+.-. ... ...+.++..||+
T Consensus 811 vd~dG~LYVADs~N-------------------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 811 CAKDGQIYVADSYN-------------------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred EeCCCcEEEEECCC-------------------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 33577888877532 2578999998887755321 011 233445567899
Q ss_pred EEEEcCCCCCCCeEEEEcCC
Q 009420 112 LIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 112 l~v~GG~~~g~~~v~~ydp~ 131 (535)
|||+-.. .+.|+++|..
T Consensus 872 lyVaDt~---Nn~Irvid~~ 888 (1057)
T PLN02919 872 LFVADTN---NSLIRYLDLN 888 (1057)
T ss_pred EEEEECC---CCEEEEEECC
Confidence 9998544 3689999987
No 170
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=28.66 E-value=2.4e+02 Score=28.48 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=48.2
Q ss_pred eeEEEECCCCC-EEECccccccccccceecCCCcEEEEcCCCCCCCeEE--EEcCCCCCCCCceecCCCCcccccceEEE
Q 009420 79 HSVEYSVLTNE-FRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIR--SFVPCNDESCDWKEIDGLGARRWYATDHI 155 (535)
Q Consensus 79 ~~~~yDp~t~~-w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~--~ydp~~~~~~~W~~~~~m~~~R~y~s~~~ 155 (535)
.+.+|+...++ +.+.+.....++.......++ .+++|-. .+++. .|+.. ..+-..++.-..+||-.++..
T Consensus 108 ~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~---~~sv~~~~~~~~---~~~l~~va~d~~~~~v~~~~~ 180 (321)
T PF03178_consen 108 KLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDA---MKSVSLLRYDEE---NNKLILVARDYQPRWVTAAEF 180 (321)
T ss_dssp EEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEES---SSSEEEEEEETT---TE-EEEEEEESS-BEEEEEEE
T ss_pred EEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEc---ccCEEEEEEEcc---CCEEEEEEecCCCccEEEEEE
Confidence 46788888888 888775543333333333244 5556533 34454 55765 556667765455888777777
Q ss_pred ecCCcEEEEcCccCCee
Q 009420 156 LPDGRIIIIGGRRQFNY 172 (535)
Q Consensus 156 L~dG~vyvvGG~~~~~~ 172 (535)
+.|++ .++++.....+
T Consensus 181 l~d~~-~~i~~D~~gnl 196 (321)
T PF03178_consen 181 LVDED-TIIVGDKDGNL 196 (321)
T ss_dssp E-SSS-EEEEEETTSEE
T ss_pred ecCCc-EEEEEcCCCeE
Confidence 76777 55555444333
No 171
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=28.29 E-value=7e+02 Score=26.02 Aligned_cols=277 Identities=15% Similarity=0.137 Sum_probs=120.6
Q ss_pred eeEEEECCCCCEE-ECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCce-ec--CCC----Cccccc
Q 009420 79 HSVEYSVLTNEFR-PLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWK-EI--DGL----GARRWY 150 (535)
Q Consensus 79 ~~~~yDp~t~~w~-~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~-~~--~~m----~~~R~y 150 (535)
.+.++|+.+++-. .+..-. .+.+.++..||+.++++.+.. ..+.++|.. +.+=. .+ ..+ ..+|-
T Consensus 59 ~vsviD~~~~~~v~~i~~G~--~~~~i~~s~DG~~~~v~n~~~--~~v~v~D~~---tle~v~~I~~~~~~~~~~~~Rv- 130 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKVGG--NPRGIAVSPDGKYVYVANYEP--GTVSVIDAE---TLEPVKTIPTGGMPVDGPESRV- 130 (369)
T ss_dssp EEEEEETTSSSEEEEEE-SS--EEEEEEE--TTTEEEEEEEET--TEEEEEETT---T--EEEEEE--EE-TTTS---E-
T ss_pred eEEEEECCcccEEEEEecCC--CcceEEEcCCCCEEEEEecCC--CceeEeccc---cccceeecccccccccccCCCc-
Confidence 5789999999842 332222 334455668999888876543 578889976 33211 11 122 23442
Q ss_pred ceEEEecCCcEEEEcCccCCeeEEEeCCCCCCeeeeccccccCCccccCCCcceE-EEeeCCcEEEEec---CeEEEEEC
Q 009420 151 ATDHILPDGRIIIIGGRRQFNYEFYPKNGAPNVYSLPFLVQTNDPRVENNLYPFV-FLNVDGFLFIFAN---NRAILFDY 226 (535)
Q Consensus 151 ~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~w~~~~~l~~~~~~~~~~~~yp~~-~~~~dG~ifv~gg---~~~~~yDp 226 (535)
.+....++..-||+-=.+...+.+....+..... ...+ ....+|+- ..-++||-|+.+. +.+.+.|.
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~-~~~i--------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK-VTTI--------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE-EEEE--------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccc-eeee--------cccccccccccCcccceeeecccccceeEEEee
Confidence 2333444556566543332222222211110110 0111 12234553 5567888877753 56778999
Q ss_pred CCCeEEEecCCCCCCCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCC
Q 009420 227 VNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPT 306 (535)
Q Consensus 227 ~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~ 306 (535)
++++-...+ +.+ ..-.+.-++. |..+ --|.++..+|........ -....+..+| ...
T Consensus 202 ~~~k~v~~i---~~g-~~p~~~~~~~-~php-------~~g~vw~~~~~~~~~~~~-------ig~~~v~v~d----~~~ 258 (369)
T PF02239_consen 202 KTGKLVALI---DTG-KKPHPGPGAN-FPHP-------GFGPVWATSGLGYFAIPL-------IGTDPVSVHD----DYA 258 (369)
T ss_dssp TTTEEEEEE---E-S-SSBEETTEEE-EEET-------TTEEEEEEEBSSSSEEEE-------EE--TTT-ST----TTB
T ss_pred ccceEEEEe---ecc-cccccccccc-ccCC-------CcceEEeeccccceeccc-------ccCCccccch----hhc
Confidence 998755322 221 1111111221 2222 145667666643211000 0011111122 256
Q ss_pred eeee-cCCCCceeceeEEccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCce-eecCCCCCCcccccceeec
Q 009420 307 WVLE-TMPQPRVMGDMTLLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRF-DLQNPSTIPRMYHSTAVLL 384 (535)
Q Consensus 307 W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W-t~~~~~~~~R~yhs~a~Ll 384 (535)
|+.. .++..-.......-||++-+.+.=.. +. ...++.++|.++- += ..+...+-.|..|- -.-
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~-~~--------~~~~v~viD~~tl---~~~~~i~~~~~~~~~h~--ef~ 324 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFL-NP--------DADTVQVIDKKTL---KVVKTITPGPGKRVVHM--EFN 324 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT--S--------SHT-EEEEECCGT---EEEE-HHHHHT--EEEE--EE-
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccC-CC--------CCceEEEEECcCc---ceeEEEeccCCCcEecc--EEC
Confidence 8876 44443333444567888766654111 00 0236899998876 22 22222222234452 234
Q ss_pred CCCc-EEEecCCCCccccccCCCCCceeeEEEEcCCCCC
Q 009420 385 RDGR-VLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLD 422 (535)
Q Consensus 385 pDG~-V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl~ 422 (535)
+||+ |||.--+.+ .+|.+|+...|.
T Consensus 325 ~dG~~v~vS~~~~~-------------~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 325 PDGKEVWVSVWDGN-------------GAIVVYDAKTLK 350 (369)
T ss_dssp TTSSEEEEEEE--T-------------TEEEEEETTTTE
T ss_pred CCCCEEEEEEecCC-------------CEEEEEECCCcE
Confidence 6775 666554322 157788777763
No 172
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=28.20 E-value=7.8e+02 Score=26.51 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=32.5
Q ss_pred cCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCC-cccccceEEEec---CCcEEEEcCccCC
Q 009420 107 RPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLG-ARRWYATDHILP---DGRIIIIGGRRQF 170 (535)
Q Consensus 107 l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~-~~R~y~s~~~L~---dG~vyvvGG~~~~ 170 (535)
.++|.+++.|+.. .++.++.-. +..- |. ..+.|.+.+.|. ||+.++.||.++.
T Consensus 90 ~n~G~~l~ag~i~---g~lYlWels---sG~L-----L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 90 SNLGYFLLAGTIS---GNLYLWELS---SGIL-----LNVLSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred CCCceEEEeeccc---CcEEEEEec---cccH-----HHHHHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 4577777777653 456666555 3221 11 135577666443 8999999998764
No 173
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=28.13 E-value=3.6e+02 Score=25.18 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=42.5
Q ss_pred CCccccccCCeEEEEEEecCccccceEEEEEEecCCccccCCCCcceEEeeeeeeeecCCcceEEEEEcCCCCCcCCCcc
Q 009420 436 ESQFTLKYKQKFRVRFSASGPVALNKVTVTMVAPSFNTHSFSMNQRLLVLASDTVTKLGNSGYEIVVNSPGSGNLAPSGY 515 (535)
Q Consensus 436 p~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~~P~~~~~~ppG~ 515 (535)
|.. +..|+.|++++-..+.- ....+|.+...+........ ....+. ...| .+++++| -||.
T Consensus 144 P~~--l~~g~~~~~~vl~~GkP-l~~a~V~~~~~~~~~~~~~~-----~~~~~T-D~~G----~~~~~~~------~~G~ 204 (215)
T PF10670_consen 144 PYK--LKAGDPLPFQVLFDGKP-LAGAEVEAFSPGGWYDVEHE-----AKTLKT-DANG----RATFTLP------RPGL 204 (215)
T ss_pred ccc--ccCCCEEEEEEEECCeE-cccEEEEEEECCCccccccc-----eEEEEE-CCCC----EEEEecC------CCEE
Confidence 445 78899888887755532 35588888888776533333 233322 1222 6666655 5799
Q ss_pred eEEEEEc
Q 009420 516 YLLFVVH 522 (535)
Q Consensus 516 ymlf~~~ 522 (535)
|||-+..
T Consensus 205 wli~a~~ 211 (215)
T PF10670_consen 205 WLIRASH 211 (215)
T ss_pred EEEEEEE
Confidence 9998864
No 174
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=27.34 E-value=1.3e+02 Score=30.46 Aligned_cols=90 Identities=20% Similarity=0.138 Sum_probs=57.1
Q ss_pred cceeecCCCcEEEecCCCCccccccCCCCCceeeEEEEcCCCCCCCCCCCCCceecCCCccccccCCeEEEEEEecCccc
Q 009420 379 STAVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYYLDAPFANLRPTIVLPESQFTLKYKQKFRVRFSASGPVA 458 (535)
Q Consensus 379 s~a~LlpDG~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl~~~~~~~RP~i~~~p~~~~~~~g~~~~v~~~~~~~~~ 458 (535)
-+.+|.-+|.||..|=+-.+.+... ....|+|+||-..-- -|.|+ + +..|..|+|-++...
T Consensus 121 HTl~ltdtG~v~afGeNK~GQlGlg------n~~~~v~s~~~~~~~----~~~v~-----~-v~cga~ftv~l~~~~--- 181 (443)
T KOG1427|consen 121 HTLVLTDTGQVLAFGENKYGQLGLG------NAKNEVESTPLPCVV----SDEVT-----N-VACGADFTVWLSSTE--- 181 (443)
T ss_pred cEEEEecCCcEEEeccccccccccc------ccccccccCCCcccc----Cccce-----e-eccccceEEEeeccc---
Confidence 3677788999999998754433221 223488888876421 22232 2 889999999987542
Q ss_pred cceEEEEEEecCCccccC----CCCcceEEeeee
Q 009420 459 LNKVTVTMVAPSFNTHSF----SMNQRLLVLASD 488 (535)
Q Consensus 459 ~~~~~~~l~~~~~~TH~~----~~~qR~v~L~~~ 488 (535)
++..+-|-..|---|.. ||+.-.|.|.|.
T Consensus 182 -si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e 214 (443)
T KOG1427|consen 182 -SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYE 214 (443)
T ss_pred -ceeecCCccccccccCcchhhccccccceeeee
Confidence 45666666666666654 566666666554
No 175
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=27.20 E-value=1.4e+02 Score=19.93 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=13.9
Q ss_pred EccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCC
Q 009420 323 LLPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDN 359 (535)
Q Consensus 323 ~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t 359 (535)
++-+|+||+.+.. | .+.++|+++
T Consensus 18 ~v~~g~vyv~~~d--g------------~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGD--G------------NLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TT--S------------EEEEEETT-
T ss_pred EEECCEEEEEcCC--C------------EEEEEeCCC
Confidence 4458998886542 2 457788764
No 176
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=26.98 E-value=2.9e+02 Score=28.64 Aligned_cols=136 Identities=14% Similarity=0.171 Sum_probs=67.7
Q ss_pred ceeEEEECCCCCEEE-Ccc---------ccccccccceecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCCceecCCC
Q 009420 78 AHSVEYSVLTNEFRP-LFV---------QSNVWCSSGAVRPDGVLIQTGGFNDG---EKKIRSFVPCNDESCDWKEIDGL 144 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~-~~~---------~~~~~c~~~~~l~dG~l~v~GG~~~g---~~~v~~ydp~~~~~~~W~~~~~m 144 (535)
.++.+-|.+.++... ++. ..+.|. +.=.||+++.+.=..+| .+..++||+. .+-.-+-+.+
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~---~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~---~dp~f~~~~~ 191 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFS---MLCGDGSLLTVTLDADGKEAQKSTKVFDPD---DDPLFEHPAY 191 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEE---EEETTSCEEEEEETSTSSEEEEEEEESSTT---TS-B-S--EE
T ss_pred CeEEEEECCCCceeeeecCCCEEEEEecCCCceE---EEecCCceEEEEECCCCCEeEeeccccCCC---Ccccccccce
Confidence 468888998888743 211 123332 11237777666422222 3455789987 4433333322
Q ss_pred --CcccccceEEEecCCcEEEE--cCccCC---eeEEE-eCCCCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEE
Q 009420 145 --GARRWYATDHILPDGRIIII--GGRRQF---NYEFY-PKNGAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIF 216 (535)
Q Consensus 145 --~~~R~y~s~~~L~dG~vyvv--GG~~~~---~~E~y-P~~~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~ 216 (535)
...||++ .+. +|+||.+ +|.... .++.+ .......|..- ++=..++--..++||+.
T Consensus 192 ~~~~~~~~F--~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG-------------G~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 192 SRDGGRLYF--VSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG-------------GWQLIAYHAASGRLYVL 255 (342)
T ss_dssp ETTTTEEEE--EBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--------------SSS-EEEETTTTEEEEE
T ss_pred ECCCCeEEE--Eec-CCEEEEEeccCCcccccCcccccCccccccCcCCc-------------ceeeeeeccccCeEEEE
Confidence 2235543 344 8999984 554321 11211 11001244321 11123333457889987
Q ss_pred ec-----------CeEEEEECCCCeEEEec
Q 009420 217 AN-----------NRAILFDYVNNKVVKQY 235 (535)
Q Consensus 217 gg-----------~~~~~yDp~t~~W~~~~ 235 (535)
-. ..+|.||+++.+-...+
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri 285 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARI 285 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEE
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEE
Confidence 42 35899999998865433
No 177
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=26.89 E-value=4.1e+02 Score=22.80 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=46.0
Q ss_pred eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccc---cccccccceecCCCcEEEEcCCCCCC-
Q 009420 47 NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQ---SNVWCSSGAVRPDGVLIQTGGFNDGE- 122 (535)
Q Consensus 47 ~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~---~~~~c~~~~~l~dG~l~v~GG~~~g~- 122 (535)
.||-+|-+.... .. ....+..||.++.+|+.+..+ ....+....+..+|+|-++.-.....
T Consensus 4 inGvly~~a~~~-~~--------------~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~ 68 (129)
T PF08268_consen 4 INGVLYWLAWSE-DS--------------DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEP 68 (129)
T ss_pred ECcEEEeEEEEC-CC--------------CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCc
Confidence 588888666541 00 124688999999999988753 23344444555688888775443221
Q ss_pred C--eEEEEc-CCCCCCCCceec
Q 009420 123 K--KIRSFV-PCNDESCDWKEI 141 (535)
Q Consensus 123 ~--~v~~yd-p~~~~~~~W~~~ 141 (535)
. .+++.+ -. +.+|++.
T Consensus 69 ~~~~iWvLeD~~---k~~Wsk~ 87 (129)
T PF08268_consen 69 DSIDIWVLEDYE---KQEWSKK 87 (129)
T ss_pred ceEEEEEeeccc---cceEEEE
Confidence 2 344443 22 5678754
No 178
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=26.59 E-value=7.9e+02 Score=27.41 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=73.3
Q ss_pred ccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecCCCCccccccCCCCCceeeEEEEcCCC------CCCC
Q 009420 351 APVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGSNPHAYYNFTGVLFPTELSLEAFSPYY------LDAP 424 (535)
Q Consensus 351 ~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppy------l~~~ 424 (535)
.+..+|-+.. +|-.-=....+-..+ +-+-+-..++++|+. +..||.|+|-. |.-.
T Consensus 156 evYRlNLEqG---rfL~P~~~~~~~lN~--v~in~~hgLla~Gt~--------------~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 156 EVYRLNLEQG---RFLNPFETDSGELNV--VSINEEHGLLACGTE--------------DGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ceEEEEcccc---cccccccccccccee--eeecCccceEEeccc--------------CceEEEecchhhhhheeeecc
Confidence 3556677777 874211111122221 112233445566663 23688888876 2111
Q ss_pred -CCCCCCceecCCCccccccCC-eEEEEEEecCcc-------------------ccceEEEEEEecCCccccCCCCcceE
Q 009420 425 -FANLRPTIVLPESQFTLKYKQ-KFRVRFSASGPV-------------------ALNKVTVTMVAPSFNTHSFSMNQRLL 483 (535)
Q Consensus 425 -~~~~RP~i~~~p~~~~~~~g~-~~~v~~~~~~~~-------------------~~~~~~~~l~~~~~~TH~~~~~qR~v 483 (535)
.-..+|-+.++|+.+.+++-. -++|.+...... -..|.++-.++..-.---+.||.|.+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~ 296 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRIL 296 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHh
Confidence 112478887776644366643 455544322110 00123333333322223345555555
Q ss_pred EeeeeeeeecCCcceEEEEEcCCCCCcCCCcceEEEEEcCCc
Q 009420 484 VLASDTVTKLGNSGYEIVVNSPGSGNLAPSGYYLLFVVHQDV 525 (535)
Q Consensus 484 ~L~~~~~~~~g~~~~~~~~~~P~~~~~~ppG~ymlf~~~~gv 525 (535)
.|=-.. .|..-..+.-+.+-|-.-.-||--|+|+-+++.
T Consensus 297 kiWd~~---~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 297 KIWDEC---TGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred hhcccc---cCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 542211 221112334344556667899999999988653
No 179
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.82 E-value=3.2e+02 Score=30.69 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred ccccCCCceEEcccC----CCcc----eeEEEEe--eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCE
Q 009420 21 VTDAAGGGWQLLQKS----IGIS----SMHMQLL--NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEF 90 (535)
Q Consensus 21 ~~~~~~g~W~~l~~~----~~~~----~~~~~~~--~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w 90 (535)
+.+..-..|.....+ ..+| .+.+.+. .+..+++-||.+ ..+.+||..+..-
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD-------------------~~IflWDin~~~~ 152 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLD-------------------RKIFLWDINTGTA 152 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCC-------------------ccEEEEEccCcch
Confidence 355555678776552 2222 1223332 477777777754 1357788776643
Q ss_pred EECccc------------cccccccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCccccc-ceEEEec
Q 009420 91 RPLFVQ------------SNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWY-ATDHILP 157 (535)
Q Consensus 91 ~~~~~~------------~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y-~s~~~L~ 157 (535)
+.+... .+.-. +-+.-.+|.++|.||.. +.+++|||. +++ ++-.|.-.+-. -...+..
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siY-SLA~N~t~t~ivsGgte---k~lr~wDpr---t~~--kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIY-SLAMNQTGTIIVSGGTE---KDLRLWDPR---TCK--KIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred hhhhhccccccccCCCCCcccee-eeecCCcceEEEecCcc---cceEEeccc---ccc--ceeeeeccccceEEEEEcC
Confidence 222110 11111 12233467899999884 789999999 543 11122211111 1345566
Q ss_pred CCcEEEEcCccC
Q 009420 158 DGRIIIIGGRRQ 169 (535)
Q Consensus 158 dG~vyvvGG~~~ 169 (535)
||.-.+.+++++
T Consensus 224 DGt~~ls~sSDg 235 (735)
T KOG0308|consen 224 DGTRLLSASSDG 235 (735)
T ss_pred CCCeEeecCCCc
Confidence 788888777764
No 180
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=25.47 E-value=5.4e+02 Score=26.75 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=20.4
Q ss_pred CcceEEEeeCCcEEEEec----------C--eEEEEECCCCeEE
Q 009420 201 LYPFVFLNVDGFLFIFAN----------N--RAILFDYVNNKVV 232 (535)
Q Consensus 201 ~yp~~~~~~dG~ifv~gg----------~--~~~~yDp~t~~W~ 232 (535)
+.+...+.+||+.+.... + -+++||++|-+-.
T Consensus 37 ~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 37 FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 345667778888665542 1 2789999997433
No 181
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=25.02 E-value=1.4e+02 Score=18.42 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=9.9
Q ss_pred cceEE-EeeCCcEEEE
Q 009420 202 YPFVF-LNVDGFLFIF 216 (535)
Q Consensus 202 yp~~~-~~~dG~ifv~ 216 (535)
+|+.. +.++|+||+.
T Consensus 3 ~P~gvav~~~g~i~Va 18 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVA 18 (28)
T ss_dssp SEEEEEEETTSEEEEE
T ss_pred CCcEEEEeCCCCEEEE
Confidence 45543 3478999886
No 182
>PRK04043 tolB translocation protein TolB; Provisional
Probab=24.58 E-value=8.7e+02 Score=25.82 Aligned_cols=79 Identities=8% Similarity=-0.021 Sum_probs=48.1
Q ss_pred ceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCC------CCCeEEEEcCCCCCCCCceecCCCCcccccc
Q 009420 78 AHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFND------GEKKIRSFVPCNDESCDWKEIDGLGARRWYA 151 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~------g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~ 151 (535)
..+..+|..+++.+++..... .. ....+||+.+++-.... +...+.++|.. +..++.+..- . ...
T Consensus 301 ~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~---~g~~~~LT~~--~-~~~ 371 (419)
T PRK04043 301 PNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN---SDYIRRLTAN--G-VNQ 371 (419)
T ss_pred ceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC---CCCeEECCCC--C-CcC
Confidence 357888999998877753211 11 35678998766654322 22468888987 7777777642 1 122
Q ss_pred eEEEecCCcEEEEc
Q 009420 152 TDHILPDGRIIIIG 165 (535)
Q Consensus 152 s~~~L~dG~vyvvG 165 (535)
....-+||+.++.-
T Consensus 372 ~p~~SPDG~~I~f~ 385 (419)
T PRK04043 372 FPRFSSDGGSIMFI 385 (419)
T ss_pred CeEECCCCCEEEEE
Confidence 34455688755543
No 183
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=24.55 E-value=1.5e+02 Score=24.26 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=31.8
Q ss_pred eC-CeEEEEecCCC-CCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccceecCCCcEEEE
Q 009420 47 NN-DRVVMFDRSDF-GPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQT 115 (535)
Q Consensus 47 ~~-gkv~v~gg~~~-~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~ 115 (535)
.+ |+||+-..+.. ...++... +.+.+.......|||.|++.+-+... -.|-.+.++-+|+.-+++
T Consensus 7 ~~~g~vYfTdsS~~~~~~~~~~~---~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 7 QDTGTVYFTDSSSRYDRRDWVYD---LLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLV 73 (89)
T ss_dssp TTT--EEEEES-SS--TTGHHHH---HHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEE
T ss_pred cCCCEEEEEeCccccCccceeee---eecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEE
Confidence 45 99999997531 11110000 01112344678999999999877522 123445555568775544
No 184
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.53 E-value=4.5e+02 Score=26.77 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=52.1
Q ss_pred eeEEEECCCCCEEEC-c-cccccccccceecCCCcEE-EEcCCCCC-CCeEEEEcCCCCCCCCceecCCCCc-ccccceE
Q 009420 79 HSVEYSVLTNEFRPL-F-VQSNVWCSSGAVRPDGVLI-QTGGFNDG-EKKIRSFVPCNDESCDWKEIDGLGA-RRWYATD 153 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~-~-~~~~~~c~~~~~l~dG~l~-v~GG~~~g-~~~v~~ydp~~~~~~~W~~~~~m~~-~R~y~s~ 153 (535)
...+||+.+.+--.+ . .....|...+++-+||+++ .+=+..+. ..-+-+||-. .....+.+.+. +-.-|-+
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r----~~fqrvgE~~t~GiGpHev 167 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR----EGFQRVGEFSTHGIGPHEV 167 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc----cccceecccccCCcCccee
Confidence 467899988764332 2 2345677777888999854 55443333 3456789874 45555555432 2334567
Q ss_pred EEecCCcEEEE
Q 009420 154 HILPDGRIIII 164 (535)
Q Consensus 154 ~~L~dG~vyvv 164 (535)
..+.||+.+|+
T Consensus 168 ~lm~DGrtlvv 178 (366)
T COG3490 168 TLMADGRTLVV 178 (366)
T ss_pred EEecCCcEEEE
Confidence 78889998887
No 185
>PRK01029 tolB translocation protein TolB; Provisional
Probab=24.38 E-value=8.8e+02 Score=25.80 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=35.5
Q ss_pred ceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEc
Q 009420 104 GAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIG 165 (535)
Q Consensus 104 ~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvG 165 (535)
...-+||+.+++-....+...+.+||+. +.+.+.+..- .+.......-+||+.+++-
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~---~g~~~~Lt~~--~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLA---TGRDYQLTTS--PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECC---CCCeEEccCC--CCCccceEECCCCCEEEEE
Confidence 3466899877765554455689999998 6777666532 1222234455688765543
No 186
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.37 E-value=1.9e+02 Score=32.72 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=50.5
Q ss_pred cccCCCceEEcccCCCcc-------eeEEEEe-eCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCE-EE
Q 009420 22 TDAAGGGWQLLQKSIGIS-------SMHMQLL-NNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEF-RP 92 (535)
Q Consensus 22 ~~~~~g~W~~l~~~~~~~-------~~~~~~~-~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w-~~ 92 (535)
++..--.|....++. +| .++++.+ ++|+-++-|+.+ | .+-+||..+++- .+
T Consensus 555 sD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed----------~---------~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 555 SDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGRYLASGDED----------G---------LIKIWDLANGSLVKQ 614 (707)
T ss_pred CCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCceEeecccC----------C---------cEEEEEcCCCcchhh
Confidence 444445688776643 22 2334443 577777666543 2 367899888543 22
Q ss_pred CccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCC
Q 009420 93 LFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 93 ~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 131 (535)
+-.-+..-++ ..+-.||.|+|+||.+ ++|++||-.
T Consensus 615 l~~Ht~ti~S-lsFS~dg~vLasgg~D---nsV~lWD~~ 649 (707)
T KOG0263|consen 615 LKGHTGTIYS-LSFSRDGNVLASGGAD---NSVRLWDLT 649 (707)
T ss_pred hhcccCceeE-EEEecCCCEEEecCCC---CeEEEEEch
Confidence 2111222222 2234699999999974 789999875
No 187
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=24.29 E-value=2.8e+02 Score=27.01 Aligned_cols=104 Identities=22% Similarity=0.267 Sum_probs=47.7
Q ss_pred ceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCcee-cCCCC-cccc--cceEEEecCCcEEEEcCccCCeeEEE-eCC
Q 009420 104 GAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKE-IDGLG-ARRW--YATDHILPDGRIIIIGGRRQFNYEFY-PKN 178 (535)
Q Consensus 104 ~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~-~~~m~-~~R~--y~s~~~L~dG~vyvvGG~~~~~~E~y-P~~ 178 (535)
..+-++|.||.+... .++.+..+-+++...|.. .+..- ..=| +-..-.-++|.+|+|=... .-+..+ |..
T Consensus 86 i~~d~~G~LYaV~~~----G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg-~~~~~~~p~~ 160 (229)
T PF14517_consen 86 IFFDPTGVLYAVTPD----GKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDG-RLYRRYRPDG 160 (229)
T ss_dssp EEE-TTS-EEEEETT-----EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE--EEEE---SS
T ss_pred EEecCCccEEEeccc----cceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCCC-ceEEeCCCCC
Confidence 344578999999764 233333332222778976 33322 2223 3344455688999986322 234444 555
Q ss_pred CCCCeeeeccccccCCccccCCCcceEEEeeCCcEEEE
Q 009420 179 GAPNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIF 216 (535)
Q Consensus 179 ~~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~ 216 (535)
..+.|....-+... ..+..|.+.+-.++|.||.+
T Consensus 161 ~~~~W~~~s~~v~~----~gw~~~~~i~~~~~g~L~~V 194 (229)
T PF14517_consen 161 GSDRWLSGSGLVGG----GGWDSFHFIFFSPDGNLWAV 194 (229)
T ss_dssp TT--HHHH-EEEES----SSGGGEEEEEE-TTS-EEEE
T ss_pred CCCccccccceecc----CCcccceEEeeCCCCcEEEE
Confidence 55667532222111 12445778888999999988
No 188
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.60 E-value=4.2e+02 Score=26.95 Aligned_cols=91 Identities=23% Similarity=0.281 Sum_probs=50.8
Q ss_pred cCCCCce-eceeEEccCCeEEEEc-CCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCc
Q 009420 311 TMPQPRV-MGDMTLLPNGNVLLIN-GAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGR 388 (535)
Q Consensus 311 ~m~~~R~-~~~~v~lpdG~I~vvG-G~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~ 388 (535)
.-...|. +.-.+--+||+++-.- +..+.. --.+-+||-. . .++.+..-+.--+..--.+|++|||
T Consensus 108 ~s~~~RHfyGHGvfs~dG~~LYATEndfd~~---------rGViGvYd~r-~---~fqrvgE~~t~GiGpHev~lm~DGr 174 (366)
T COG3490 108 VSQEGRHFYGHGVFSPDGRLLYATENDFDPN---------RGVIGVYDAR-E---GFQRVGEFSTHGIGPHEVTLMADGR 174 (366)
T ss_pred ecccCceeecccccCCCCcEEEeecCCCCCC---------CceEEEEecc-c---ccceecccccCCcCcceeEEecCCc
Confidence 3344553 3333677899876532 111111 1146899987 5 7777766544333322567889999
Q ss_pred EEEecCC---CCccccccCCCCCceeeEEEEcCCC
Q 009420 389 VLVGGSN---PHAYYNFTGVLFPTELSLEAFSPYY 420 (535)
Q Consensus 389 V~v~GG~---~~~~~~~~~~~~~~~~~vE~y~Ppy 420 (535)
.+|+-++ .+.+ |. -+++++|...|.+
T Consensus 175 tlvvanGGIethpd--fg----R~~lNldsMePSl 203 (366)
T COG3490 175 TLVVANGGIETHPD--FG----RTELNLDSMEPSL 203 (366)
T ss_pred EEEEeCCceecccc--cC----ccccchhhcCccE
Confidence 8766543 2211 11 2466777777777
No 189
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=23.37 E-value=1.5e+02 Score=20.10 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=18.9
Q ss_pred EEeeCCcEEEEecCeEEEEECCC
Q 009420 206 FLNVDGFLFIFANNRAILFDYVN 228 (535)
Q Consensus 206 ~~~~dG~ifv~gg~~~~~yDp~t 228 (535)
+...+|++|.+-|+..+.||..+
T Consensus 5 ~~~~~~~~yfFkg~~yw~~~~~~ 27 (45)
T smart00120 5 FELRNGKTYFFKGDKYWRFDPKR 27 (45)
T ss_pred EEeCCCeEEEEeCCEEEEEcCCc
Confidence 44458899999999999999764
No 190
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=22.98 E-value=1.3e+02 Score=19.39 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=17.0
Q ss_pred cceecCCCcEEEEcCCCCCCCeEEEEc
Q 009420 103 SGAVRPDGVLIQTGGFNDGEKKIRSFV 129 (535)
Q Consensus 103 ~~~~l~dG~l~v~GG~~~g~~~v~~yd 129 (535)
+....+++..++.||.+ +.+++||
T Consensus 16 ~i~~~~~~~~~~s~~~D---~~i~vwd 39 (39)
T PF00400_consen 16 SIAWSPDGNFLASGSSD---GTIRVWD 39 (39)
T ss_dssp EEEEETTSSEEEEEETT---SEEEEEE
T ss_pred EEEEecccccceeeCCC---CEEEEEC
Confidence 34456678888888874 5777775
No 191
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=22.80 E-value=4e+02 Score=28.94 Aligned_cols=96 Identities=13% Similarity=0.191 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCC----CceeceeEEccC-CeEEEEcCCCCCC
Q 009420 266 AAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQ----PRVMGDMTLLPN-GNVLLINGAGKGT 339 (535)
Q Consensus 266 ~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~----~R~~~~~v~lpd-G~I~vvGG~~~g~ 339 (535)
+++||+.... ..+..+|+.+....|+.. .... +..-...+.+.+ ++||+... + +
T Consensus 61 ~g~vy~~~~~-----------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~-g- 120 (488)
T cd00216 61 DGDMYFTTSH-----------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-D-G- 120 (488)
T ss_pred CCEEEEeCCC-----------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-C-C-
Confidence 7888885432 235667777666779875 3221 111111123446 88887432 1 1
Q ss_pred CCcccCCCCccccEEEeCCCCCCCceeecCCCCCCccc-ccceeecCCCcEEEec
Q 009420 340 AGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMY-HSTAVLLRDGRVLVGG 393 (535)
Q Consensus 340 ~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~y-hs~a~LlpDG~V~v~G 393 (535)
.+.++|+++.+ ..|+.-........+ ...+..+-+++||+..
T Consensus 121 -----------~v~AlD~~TG~-~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~ 163 (488)
T cd00216 121 -----------RLVALDAETGK-QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGS 163 (488)
T ss_pred -----------eEEEEECCCCC-EeeeecCCCCcCcceEecCCCEEECCEEEEec
Confidence 46788987752 268754332211111 1222233467777643
No 192
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=22.42 E-value=1.2e+03 Score=26.60 Aligned_cols=185 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred cccceecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCCceecCCCCcccccceEEEecCCcEEEEcCccCCeeEEE-eCCC
Q 009420 101 CSSGAVRPDGVLIQTGGFNDGEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHILPDGRIIIIGGRRQFNYEFY-PKNG 179 (535)
Q Consensus 101 c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~y-P~~~ 179 (535)
|+.++.. ++. ++.|-++ +++.++-+. ...-. +..-+..-| +++.|+++ .|+.|+.+ +++.+| -.+
T Consensus 105 C~ls~~~-~~~-~iSgSWD---~TakvW~~~---~l~~~-l~gH~asVW--Av~~l~e~-~~vTgsaD-KtIklWk~~~- 170 (745)
T KOG0301|consen 105 CSLSIGE-DGT-LISGSWD---STAKVWRIG---ELVYS-LQGHTASVW--AVASLPEN-TYVTGSAD-KTIKLWKGGT- 170 (745)
T ss_pred eeeecCC-cCc-eEecccc---cceEEecch---hhhcc-cCCcchhee--eeeecCCC-cEEeccCc-ceeeeccCCc-
Q ss_pred CCCeeeeccccccCCccccCCCcceEEEeeCCcEEEEecC-eEEEEECCCCeEEEecCCCCCCCCCCCCCCCceEeeccc
Q 009420 180 APNVYSLPFLVQTNDPRVENNLYPFVFLNVDGFLFIFANN-RAILFDYVNNKVVKQYPAIPGGDPRSYPSSGSAVLLPLK 258 (535)
Q Consensus 180 ~~~w~~~~~l~~~~~~~~~~~~yp~~~~~~dG~ifv~gg~-~~~~yDp~t~~W~~~~p~~p~~~~R~~~~~g~~v~lpl~ 258 (535)
.+..+....|- -....+++++.+.-.++. ....+|.....-.+... .++|-.+=+.++
T Consensus 171 -----~l~tf~gHtD~------VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~g------htn~vYsis~~~---- 229 (745)
T KOG0301|consen 171 -----LLKTFSGHTDC------VRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHG------HTNFVYSISMAL---- 229 (745)
T ss_pred -----hhhhhccchhh------eeeeEEecCCCeEeecCCceEEEEeccCceeeeeec------cceEEEEEEecC----
Q ss_pred ccCCCCCCcEEEEEcCCCCCcccccccccccccCCceEEEEecCCCCCeeee-cCCCCceeceeEEccCCeEEEEcCCCC
Q 009420 259 NLLAPSVAAEVLVCGGAPKGAYEQAEKGVFVAALNTCARIKITDPTPTWVLE-TMPQPRVMGDMTLLPNGNVLLINGAGK 337 (535)
Q Consensus 259 ~~~~~~~~gkIyv~GG~~~~~~~~~~~~~~~pa~~s~e~~d~~~~~~~W~~~-~m~~~R~~~~~v~lpdG~I~vvGG~~~ 337 (535)
++.+.++-|.+ .++.+++ .+.-... .+|.--.+.. ..|+||.|++ ||.+
T Consensus 230 -------~~~~Ivs~gED----------------rtlriW~----~~e~~q~I~lPttsiWsa-~~L~NgDIvv-g~SD- 279 (745)
T KOG0301|consen 230 -------SDGLIVSTGED----------------RTLRIWK----KDECVQVITLPTTSIWSA-KVLLNGDIVV-GGSD- 279 (745)
T ss_pred -------CCCeEEEecCC----------------ceEEEee----cCceEEEEecCccceEEE-EEeeCCCEEE-eccC-
Q ss_pred CCCCcccCCCCccccEEEeCCCCCCCce
Q 009420 338 GTAGWELGRDPVLAPVVYRPDNIPGSRF 365 (535)
Q Consensus 338 g~~g~~~~~~~~~~~e~YDP~t~~g~~W 365 (535)
| .+.+|.-..+ ||
T Consensus 280 G------------~VrVfT~~k~---R~ 292 (745)
T KOG0301|consen 280 G------------RVRVFTVDKD---RK 292 (745)
T ss_pred c------------eEEEEEeccc---cc
No 193
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=22.40 E-value=2.9e+02 Score=29.81 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=31.6
Q ss_pred eeEEEECCCCCEEECc-cccccccccceecCCC-cEEEEcCCCCCCCeEEEEcCC
Q 009420 79 HSVEYSVLTNEFRPLF-VQSNVWCSSGAVRPDG-VLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~-~~~~~~c~~~~~l~dG-~l~v~GG~~~g~~~v~~ydp~ 131 (535)
.+-.||.+|++-..-- .-....|. -.-+|+ .++++||.+ +.+..||-.
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cv--kf~pd~~n~fl~G~sd---~ki~~wDiR 330 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCV--KFHPDNQNIFLVGGSD---KKIRQWDIR 330 (503)
T ss_pred eeeeeccccceEEEEEecCCCceee--ecCCCCCcEEEEecCC---CcEEEEecc
Confidence 3557888888765432 22333442 234566 899999985 678889887
No 194
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.76 E-value=8.2e+02 Score=27.57 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=27.7
Q ss_pred eeEEEECCCCCEEECccccccccccceecCCCcEEEEcCCCCCCCeEEEEcCC
Q 009420 79 HSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 79 ~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 131 (535)
.+-+||-+|.+--+.-.-+..--+...+.+.=-|++.|+. + .++++++..
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE-D--GTvriWhs~ 257 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE-D--GTVRIWNSK 257 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC-C--ccEEEecCc
Confidence 4678998887643222222222223334555567777765 3 468888755
No 195
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=21.76 E-value=2.1e+02 Score=31.04 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=63.4
Q ss_pred EEEeeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECcccc--ccccccceecCCCcEEEEcCCCC
Q 009420 43 MQLLNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQS--NVWCSSGAVRPDGVLIQTGGFND 120 (535)
Q Consensus 43 ~~~~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~--~~~c~~~~~l~dG~l~v~GG~~~ 120 (535)
+-+++||+-+++||.. .++.+||..+-+-+--+.++ ..-|.+-++-+|-++...- +.+
T Consensus 471 ckL~pdgrtLivGGea-------------------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsc-csd 530 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEA-------------------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSC-CSD 530 (705)
T ss_pred eEecCCCceEEecccc-------------------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeee-ccC
Confidence 4556799999999842 35789999877655444333 3568777777888776542 222
Q ss_pred CCCeEEEEcCCCCCCCCceecCCCCcccccceEEEe-cCCcEEEEcCccCCeeEEE
Q 009420 121 GEKKIRSFVPCNDESCDWKEIDGLGARRWYATDHIL-PDGRIIIIGGRRQFNYEFY 175 (535)
Q Consensus 121 g~~~v~~ydp~~~~~~~W~~~~~m~~~R~y~s~~~L-~dG~vyvvGG~~~~~~E~y 175 (535)
..|.+||.. .. +.+..++----..++..+ .||.-+=.||.++ ++.+|
T Consensus 531 --GnI~vwDLh---nq--~~VrqfqGhtDGascIdis~dGtklWTGGlDn-tvRcW 578 (705)
T KOG0639|consen 531 --GNIAVWDLH---NQ--TLVRQFQGHTDGASCIDISKDGTKLWTGGLDN-TVRCW 578 (705)
T ss_pred --CcEEEEEcc---cc--eeeecccCCCCCceeEEecCCCceeecCCCcc-ceeeh
Confidence 358888886 22 222333322222333333 3676666799875 45555
No 196
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=8.9e+02 Score=26.47 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred EEeeCCcEEEEec--CeEEEEECCCCeEEEecCCCCC-CCCCCCCCCCceEeecccccCCCCCCcEEEEEcCCC
Q 009420 206 FLNVDGFLFIFAN--NRAILFDYVNNKVVKQYPAIPG-GDPRSYPSSGSAVLLPLKNLLAPSVAAEVLVCGGAP 276 (535)
Q Consensus 206 ~~~~dG~ifv~gg--~~~~~yDp~t~~W~~~~p~~p~-~~~R~~~~~g~~v~lpl~~~~~~~~~gkIyv~GG~~ 276 (535)
--.++|..+++|- ..+++||.++.+- .+.|-. ...| .+++ .++..++.+|..+
T Consensus 224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~---~~~~~~~h~~r------vg~l---------aW~~~~lssGsr~ 279 (484)
T KOG0305|consen 224 KWSPDGSHLAVGTSDGTVQIWDVKEQKK---TRTLRGSHASR------VGSL---------AWNSSVLSSGSRD 279 (484)
T ss_pred EECCCCCEEEEeecCCeEEEEehhhccc---cccccCCcCce------eEEE---------eccCceEEEecCC
Confidence 3456899999984 5689999987762 333333 1122 2333 2689999999875
No 197
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=21.23 E-value=2e+02 Score=26.94 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=33.9
Q ss_pred eeCCeEEEEecCCCCCCCCCCCCCccccCCCCceeEEEECCCCCEEECccccccccccceecCCCcEEEEcCC
Q 009420 46 LNNDRVVMFDRSDFGPSNLSLPPGKCLKTDCTAHSVEYSVLTNEFRPLFVQSNVWCSSGAVRPDGVLIQTGGF 118 (535)
Q Consensus 46 ~~~gkv~v~gg~~~~~~~~~~~~G~~~~~d~~~~~~~yDp~t~~w~~~~~~~~~~c~~~~~l~dG~l~v~GG~ 118 (535)
-|+|+.++++|.. + . +| .+++||.. +...+.......|.....-+||+.+++...
T Consensus 109 sP~G~~l~~~g~~-n---~---~G---------~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 109 SPDGRFLVLAGFG-N---L---NG---------DLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CCCCCEEEEEEcc-C---C---Cc---------EEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 3688888888754 1 1 12 47889988 444444333333445556788988887654
No 198
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=20.68 E-value=5.9e+02 Score=25.97 Aligned_cols=50 Identities=8% Similarity=0.105 Sum_probs=33.0
Q ss_pred ceeEEEECCCCCEEECcccc--ccccccceecCCCcEEEEcCCCCCCCeEEEEcCC
Q 009420 78 AHSVEYSVLTNEFRPLFVQS--NVWCSSGAVRPDGVLIQTGGFNDGEKKIRSFVPC 131 (535)
Q Consensus 78 ~~~~~yDp~t~~w~~~~~~~--~~~c~~~~~l~dG~l~v~GG~~~g~~~v~~ydp~ 131 (535)
..+.+||+.+++-.++..-. -+-|+-.-. .+-.++++|-++ +++..+|+.
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWD---KTlKfWD~R 145 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWD---KTLKFWDTR 145 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEEEecC-CCcceeEecccc---cceeecccC
Confidence 35789999999998887432 222322111 123578888774 889999987
No 199
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.54 E-value=5.6e+02 Score=28.88 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=30.4
Q ss_pred ccCCeEEEEcCCCCCCCCcccCCCCccccEEEeCCCCCCCceeecCCCCCCcccccceeecCCCcEEEecCC
Q 009420 324 LPNGNVLLINGAGKGTAGWELGRDPVLAPVVYRPDNIPGSRFDLQNPSTIPRMYHSTAVLLRDGRVLVGGSN 395 (535)
Q Consensus 324 lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~Wt~~~~~~~~R~yhs~a~LlpDG~V~v~GG~ 395 (535)
-++|.|+|.||... ...+|||.+.. +-.++ .--+-.--+.++..||+=++.|+.
T Consensus 180 N~t~t~ivsGgtek-------------~lr~wDprt~~--kimkL---rGHTdNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEK-------------DLRLWDPRTCK--KIMKL---RGHTDNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred CCcceEEEecCccc-------------ceEEecccccc--ceeee---eccccceEEEEEcCCCCeEeecCC
Confidence 35677988888652 35899999971 11111 101111124566788865555554
Done!