BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009423
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 141/204 (69%), Gaps = 2/204 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A+ +R+G+ V+V+DDEDRENEGD+I A +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
+ ++L+LP+MV ++N T FTV+++A G TTGVSA DR TV A +KP D
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 130
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
NRPGH+FPL+ + GGVL R GHTEA++DL LAG +P VLCE+ +DDG+MAR P+ +
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 190
Query: 288 FAQTENLKIISIADLIRYRRKRDR 311
FA N+ +++I DL+ YR+ +R
Sbjct: 191 FANKHNMALVTIEDLVAYRQAHER 214
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 141/204 (69%), Gaps = 2/204 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A+ +R+G+ V+V+DDEDRENEGD+I A +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
+ ++L+LP+MV ++N T FTV+++A G TTGVSA DR TV A +KP D
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 130
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
NRPGH+FPL+ + GGVL R GHTEA++DL LAG +P VLCE+ +DDG+MAR P+ +
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 190
Query: 288 FAQTENLKIISIADLIRYRRKRDR 311
FA N+ +++I DL+ YR+ +R
Sbjct: 191 FANKHNMALVTIEDLVAYRQAHER 214
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 139/199 (69%), Gaps = 2/199 (1%)
Query: 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDL 170
+ AI+ +R G+ V+V+DDE RENEGD++ AA +T E MA +RHG+GIVC+ + E
Sbjct: 19 VERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCLCITDERR 78
Query: 171 ERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNR 230
++L+LP+MV H N + TAFTV+++A G TTGVSA DR T+ ++KP D NR
Sbjct: 79 QQLDLPMMVTH--NSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNR 136
Query: 231 PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQ 290
PGH+FPL+ + GGVL R GHTEAS+DLA LAG +P VLCE+ +DDGSMA P++ FA+
Sbjct: 137 PGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAFAK 196
Query: 291 TENLKIISIADLIRYRRKR 309
++ +++I DL Y + R
Sbjct: 197 LHDMPVVTIDDLAAYLQSR 215
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 141/204 (69%), Gaps = 2/204 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A++ +R+G+ V+V+DDEDRENEGD+I A +T E MA +RHG+GIVC+ +
Sbjct: 13 FERVELALDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
+ ++L+LP+MV ++N T FTV+++A G TTGVSA DR TV A +KP D
Sbjct: 73 DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSD 130
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
NRPGH+FPL+ + GGVL R GHTEA++DL LAG +P VLCE+ +DDG+MAR P+
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIA 190
Query: 288 FAQTENLKIISIADLIRYRRKRDR 311
FA N+ +++I DL+ YR+ +R
Sbjct: 191 FAGQHNMAVVTIEDLVAYRQAHER 214
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 143/203 (70%), Gaps = 4/203 (1%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
S+ A+ DI GK VIV+DDEDRENEGDLI AA TPE +AF+VR+ +G +CV + G
Sbjct: 6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAI 65
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFN 229
+RL L M + N++K TA+TV+VDA+ G TG+SA+DRA T+ LA S +DF
Sbjct: 66 CDRLGLLPM--YAVNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFT 123
Query: 230 RPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVD--DDGSMARLPKLRQ 287
RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AGL+P +CEIV D+GSMA +LR
Sbjct: 124 RPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRV 183
Query: 288 FAQTENLKIISIADLIRYRRKRD 310
FA L +I+IADLI +RRK +
Sbjct: 184 FADEHGLALITIADLIEWRRKHE 206
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 143/203 (70%), Gaps = 4/203 (1%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
S+ A+ DI GK VIV+DDEDRENEGDLI AA TPE +AF+VR+ +G +CV + G
Sbjct: 12 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAI 71
Query: 170 LERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFN 229
+RL L M + N++K TA+TV+VDA+ G TG+SA+DRA T+ LA S +DF
Sbjct: 72 CDRLGLLPM--YAVNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFT 129
Query: 230 RPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVD--DDGSMARLPKLRQ 287
RPGH+ PL+ ++GGVL+R GHTEA+VDLA +AGL+P +CEIV D+GSMA +LR
Sbjct: 130 RPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRV 189
Query: 288 FAQTENLKIISIADLIRYRRKRD 310
FA L +I+IADLI +RRK +
Sbjct: 190 FADEHGLALITIADLIEWRRKHE 212
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/205 (50%), Positives = 140/205 (68%), Gaps = 3/205 (1%)
Query: 105 TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVS 164
T F I EA+E + G+ +IV+DDEDRENEGDLIMAA L+T E MAF+VR+ +G VCV
Sbjct: 2 TNIFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVP 61
Query: 165 MKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSK 224
+ E +LELP M+ ++ + TA+T++ D GTTTG+SA+DRA T +LA +SK
Sbjct: 62 LSEERANQLELPPMLANRSDRHG--TAYTITCDFAEGTTTGISAHDRALTTRSLANPNSK 119
Query: 225 PEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIV-DDDGSMARLP 283
P+DF +PGHI PL+ G + KR GHTEA+V L+ LAGL+P V+CE+V D+DG M RL
Sbjct: 120 PQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLD 179
Query: 284 KLRQFAQTENLKIISIADLIRYRRK 308
QF + +KII+I L+ Y K
Sbjct: 180 DCIQFGKKHGIKIININQLVEYISK 204
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
pdb|2BZ0|B Chain B, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
Length = 196
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 119/188 (63%), Gaps = 1/188 (0%)
Query: 317 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 376
A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S RCD
Sbjct: 7 AEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 377 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 436
CG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +LG
Sbjct: 67 CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 437 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 496
D R++ + A + + LGV ++L+TNNP K L G+ I R+PL+ N+ YL+T
Sbjct: 126 DERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 497 KRAKMGHV 504
K KMGH+
Sbjct: 186 KAEKMGHL 193
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 134/223 (60%), Gaps = 14/223 (6%)
Query: 104 PTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCV 163
P F +I + I+ + G+ V+V+DD RENE DLI+AA VT E MAF+VRH +G++C
Sbjct: 8 PKSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICA 67
Query: 164 SMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKY-GTTTGVSANDRAKTVLALACRD 222
+ E L+LP MV H N + TA+TVSVDA++ TTTG+SA+DRA LA D
Sbjct: 68 PLTPERTTALDLPQMVTH--NADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPD 125
Query: 223 SKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGS---- 278
++P F RPGH+FPL+ GGV R GHTEA V+L LAG PVAV+ EIVDD
Sbjct: 126 AQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGR 185
Query: 279 -------MARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVE 314
M R + FA+ LK+ +I D+I + K + +E
Sbjct: 186 AVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE 228
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii
Length = 196
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 117/188 (62%), Gaps = 1/188 (0%)
Query: 317 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 376
A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S RCD
Sbjct: 7 AEAKLPTPWGDFLXVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 377 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 436
CG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +LG
Sbjct: 67 CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 437 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 496
D R++ + A + LGV ++L+TNNP K L G+ I R+PL+ N+ YL+T
Sbjct: 126 DERDFTLCADXFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 497 KRAKMGHV 504
K K GH+
Sbjct: 186 KAEKXGHL 193
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 125/220 (56%), Gaps = 27/220 (12%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
++ +AIE +++G++++V D ++RE E D+++A+ +TPE + + + G++C ++ +
Sbjct: 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 62
Query: 170 LERLELPLMV------------------NHKDNEEKLCTAFTVSVDAKYGTTTGVSANDR 211
+L +P MV N +EK ++F+++++ + T TG++ NDR
Sbjct: 63 CNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEK--SSFSITINHR-KTFTGITDNDR 119
Query: 212 AKTVLALA--CRDSKPEDFNR----PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265
A T+ LA ++ + DF + PGH+ L+ EG V R GHTE +V LA LA L P
Sbjct: 120 AFTIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELANLVP 179
Query: 266 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY 305
+ +CE++ DDG+ + +++A+ NL +S ++I Y
Sbjct: 180 ITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 124/220 (56%), Gaps = 27/220 (12%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
++ +AIE +++G++++V D ++RE E D+++A+ +TPE + + + G++C ++ +
Sbjct: 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 62
Query: 170 LERLELPLMV------------------NHKDNEEKLCTAFTVSVDAKYGTTTGVSANDR 211
+L +P MV N +EK ++F+++++ + T TG++ NDR
Sbjct: 63 CNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEK--SSFSITINHR-KTFTGITDNDR 119
Query: 212 AKTVLALA--CRDSKPEDFNR----PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265
A T+ LA ++ + DF + PG + L+ EG V R GHTE +V LA LA L P
Sbjct: 120 AFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVP 179
Query: 266 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY 305
+ +CE++ DDG+ + +++A+ NL +S ++I Y
Sbjct: 180 ITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|2Q8W|A Chain A, Crystal Structure Of Pap-S1aci, A Pokeweed Antiviral
Protein From Seeds Of Phytolacca Acinosa
Length = 261
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 91 DFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAM 150
DFFPND +L+ + + IS AI D + G L ++ ++ + +++ + P+
Sbjct: 193 DFFPNDKVLELE---ENWGKISTAIHDAKNGALPKPLELKNADGTKWIVLRVDEIKPDVG 249
Query: 151 AFIVRHGT 158
+GT
Sbjct: 250 LLKYVNGT 257
>pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
pdb|2D4Y|B Chain B, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
Length = 463
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 129 DEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKL 188
D+ R G L +A A AF +H G KG+D + P++ ++ +N +K
Sbjct: 228 DQTRNTLGQLALAF------ADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADK- 280
Query: 189 CTAFTVSVDAKYGTTTGVSAND 210
TVS+ AK +T V A D
Sbjct: 281 ----TVSLTAKVVDSTKVQATD 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,290,925
Number of Sequences: 62578
Number of extensions: 658698
Number of successful extensions: 1629
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 15
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)