Query 009423
Match_columns 535
No_of_seqs 231 out of 1497
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 12:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 3E-140 8E-145 1116.1 44.9 444 74-517 1-445 (450)
2 PRK09319 bifunctional 3,4-dihy 100.0 2E-134 4E-139 1085.6 40.2 400 107-509 4-407 (555)
3 PRK09311 bifunctional 3,4-dihy 100.0 1E-132 3E-137 1049.1 39.8 399 107-507 3-401 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 2E-131 4E-136 1032.9 37.0 383 112-509 2-384 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 2E-121 4E-126 953.8 38.0 366 107-483 2-368 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 3E-118 7E-123 929.8 37.9 364 107-483 2-365 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 3E-115 7E-120 896.1 34.9 337 107-482 2-339 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 1E-108 3E-113 859.5 33.9 352 107-509 16-369 (375)
9 COG0108 RibB 3,4-dihydroxy-2-b 100.0 3.6E-77 7.9E-82 572.0 22.3 201 107-310 2-202 (203)
10 PRK00910 ribB 3,4-dihydroxy-2- 100.0 2.2E-74 4.7E-79 562.2 22.7 202 107-310 13-214 (218)
11 PRK01792 ribB 3,4-dihydroxy-2- 100.0 1.3E-73 2.8E-78 555.5 23.1 201 107-309 12-212 (214)
12 PRK00014 ribB 3,4-dihydroxy-2- 100.0 4.1E-72 9E-77 548.8 23.0 201 109-311 19-219 (230)
13 TIGR00506 ribB 3,4-dihydroxy-2 100.0 1.3E-71 2.9E-76 537.3 21.8 197 108-306 2-199 (199)
14 PF00926 DHBP_synthase: 3,4-di 100.0 1.3E-71 2.7E-76 536.1 17.1 194 111-306 1-194 (194)
15 KOG1284 Bifunctional GTP cyclo 100.0 1.2E-71 2.5E-76 564.6 15.8 333 67-399 21-357 (357)
16 COG0807 RibA GTP cyclohydrolas 100.0 1.2E-68 2.5E-73 513.8 17.5 192 312-505 2-193 (193)
17 PRK03353 ribB 3,4-dihydroxy-2- 100.0 1.3E-67 2.9E-72 516.2 22.9 202 107-310 12-213 (217)
18 PRK05773 3,4-dihydroxy-2-butan 100.0 1.3E-66 2.8E-71 508.6 21.3 193 110-306 2-217 (219)
19 PRK00393 ribA GTP cyclohydrola 100.0 1.3E-59 2.9E-64 453.7 17.6 196 312-508 2-197 (197)
20 TIGR00505 ribA GTP cyclohydrol 100.0 1.5E-58 3.1E-63 444.4 17.3 191 314-505 1-191 (191)
21 PF00925 GTP_cyclohydro2: GTP 100.0 9E-58 1.9E-62 431.2 11.3 169 313-482 1-169 (169)
22 cd00641 GTP_cyclohydro2 GTP cy 100.0 2.2E-55 4.7E-60 422.7 17.0 193 312-505 1-193 (193)
23 PRK07198 hypothetical protein; 100.0 1.4E-41 3.1E-46 352.7 13.1 222 260-499 148-394 (418)
24 KOG1284 Bifunctional GTP cyclo 99.7 1.7E-17 3.7E-22 170.1 2.0 192 315-508 64-324 (357)
25 PRK14481 dihydroxyacetone kina 83.7 3.6 7.7E-05 43.9 7.6 88 331-455 35-127 (331)
26 TIGR02361 dak_ATP dihydroxyace 82.6 3.4 7.3E-05 47.1 7.3 88 331-454 33-125 (574)
27 PRK11468 dihydroxyacetone kina 79.7 6.5 0.00014 42.4 7.8 88 331-454 34-126 (356)
28 TIGR02362 dhaK1b probable dihy 78.4 6.4 0.00014 42.0 7.2 87 331-454 32-123 (326)
29 TIGR02363 dhaK1 dihydroxyaceto 77.7 6.7 0.00014 41.9 7.1 88 331-454 35-127 (329)
30 PF02733 Dak1: Dak1 domain; I 76.2 2.6 5.6E-05 44.8 3.6 86 332-454 20-110 (325)
31 KOG3009 Predicted carbohydrate 75.4 9.9 0.00022 42.5 7.8 158 112-299 30-203 (614)
32 PRK14479 dihydroxyacetone kina 75.1 7.6 0.00016 44.3 7.1 87 331-454 34-125 (568)
33 PRK14483 DhaKLM operon coactiv 71.0 12 0.00027 40.0 7.1 87 331-454 34-125 (329)
34 PTZ00375 dihydroxyacetone kina 68.0 13 0.00029 42.5 7.0 87 331-454 37-128 (584)
35 PF06794 UPF0270: Uncharacteri 45.6 26 0.00057 29.5 3.4 21 110-130 38-58 (70)
36 KOG2426 Dihydroxyacetone kinas 44.6 1.1E+02 0.0023 34.8 8.7 94 325-459 31-133 (582)
37 PF13344 Hydrolase_6: Haloacid 43.5 6.4 0.00014 34.4 -0.5 50 445-497 23-77 (101)
38 COG1560 HtrB Lauroyl/myristoyl 40.9 72 0.0016 33.8 6.6 92 109-220 182-276 (308)
39 PF13420 Acetyltransf_4: Acety 40.2 47 0.001 29.5 4.5 37 445-481 102-141 (155)
40 PRK04966 hypothetical protein; 36.9 40 0.00086 28.7 3.2 23 109-131 37-59 (72)
41 PF00332 Glyco_hydro_17: Glyco 34.5 28 0.00061 36.6 2.5 38 444-481 18-55 (310)
42 PRK00304 hypothetical protein; 31.5 78 0.0017 27.2 4.1 21 110-130 37-57 (75)
43 PF04472 DUF552: Protein of un 30.6 51 0.0011 27.2 2.9 23 107-130 8-30 (73)
44 PF13263 PHP_C: PHP-associated 29.7 29 0.00064 27.2 1.3 20 283-302 5-24 (56)
45 TIGR02990 ectoine_eutA ectoine 28.6 1.3E+02 0.0028 30.7 5.9 92 380-484 58-156 (239)
46 COG3473 Maleate cis-trans isom 28.1 56 0.0012 33.3 3.2 57 444-500 109-176 (238)
47 PRK08296 hypothetical protein; 27.7 61 0.0013 37.5 3.8 82 120-202 511-598 (603)
48 PF09363 XFP_C: XFP C-terminal 27.5 20 0.00044 35.9 0.0 50 103-152 2-53 (203)
49 PF00391 PEP-utilizers: PEP-ut 25.8 48 0.001 27.7 1.9 65 135-199 9-78 (80)
50 cd03109 DTBS Dethiobiotin synt 25.5 1.3E+02 0.0028 27.3 4.9 50 248-298 82-131 (134)
51 PLN02398 hydroxyacylglutathion 23.7 7.2E+02 0.016 26.6 10.7 140 245-404 102-246 (329)
52 PF00107 ADH_zinc_N: Zinc-bind 23.1 40 0.00087 29.3 1.0 33 443-476 5-37 (130)
53 PRK08558 adenine phosphoribosy 22.9 1.3E+02 0.0029 30.5 4.8 49 245-299 185-234 (238)
54 COG0825 AccA Acetyl-CoA carbox 22.3 3.4E+02 0.0074 29.1 7.7 94 120-277 105-200 (317)
55 PLN02880 tyrosine decarboxylas 22.1 1.5E+02 0.0032 33.1 5.4 51 246-296 221-272 (490)
56 PF03437 BtpA: BtpA family; I 22.0 1.5E+02 0.0032 30.8 5.0 120 111-277 28-152 (254)
57 PRK06354 pyruvate kinase; Prov 21.9 1.7E+02 0.0037 33.8 5.9 82 120-202 494-581 (590)
58 PRK11320 prpB 2-methylisocitra 21.9 7.2E+02 0.016 26.2 10.1 40 192-234 79-124 (292)
59 COG1926 Predicted phosphoribos 21.6 1.9E+02 0.0042 29.5 5.5 49 120-168 123-185 (220)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=3.5e-140 Score=1116.10 Aligned_cols=444 Identities=82% Similarity=1.270 Sum_probs=432.4
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHH
Q 009423 74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFI 153 (535)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm 153 (535)
|+++|||++||++|++++||.++.+.+++.+.+.|++|++||++||+|+||||+||++||||||||+|||.+|||.||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm 80 (450)
T PLN02831 1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL 80 (450)
T ss_pred CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence 57899999999999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEeecChhhHhhcCCCcccccCCCCCCcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCC
Q 009423 154 VRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGH 233 (535)
Q Consensus 154 ~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGH 233 (535)
++|++|+||+||++++|++|+||+|+....|.+..+++||||||+++|++|||||.|||+|||+||+|.++|+||++|||
T Consensus 81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH 160 (450)
T PLN02831 81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH 160 (450)
T ss_pred HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence 99999999999999999999999999854477777899999999998999999999999999999999999999999999
Q ss_pred ccceeeccCCcccccchhHHHHHHHHHcCCCccEEEEEEeCC-CCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhh
Q 009423 234 IFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312 (535)
Q Consensus 234 VfPL~a~~gGvl~R~GhtEAAvDLarLAGl~PaaVicEil~~-dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~l 312 (535)
||||++++|||++|+|||||||||||||||.|++|||||+++ ||+||+.+++.+||++|+||+++|+|||+||+++|++
T Consensus 161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l 240 (450)
T PLN02831 161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240 (450)
T ss_pred ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred hhhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhC
Q 009423 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 392 (535)
Q Consensus 313 V~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G 392 (535)
|+++.+.+|||.||+|++++|++..++.||+||++|++..++||||||||+|+|||+|||.+|||+|||+.||++|+++|
T Consensus 241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G 320 (450)
T PLN02831 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAG 320 (450)
T ss_pred ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccC
Q 009423 393 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGY 472 (535)
Q Consensus 393 ~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~ 472 (535)
+|||||||+||||||||.+|+++|.+|++|+||++||.+||++.|.|+||+|||||++|||++||||||||.|+.+|++|
T Consensus 321 ~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~dLGI~~irLLTNNp~K~~~L~~~ 400 (450)
T PLN02831 321 RGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGY 400 (450)
T ss_pred CEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHHHHHHHcCCCEEEECCCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 009423 473 GLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSI 517 (535)
Q Consensus 473 GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~~~~~~~~~~ 517 (535)
||+|++++|++++++++|++||+||++||||+|..++.+++++.-
T Consensus 401 GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~~~~~~~~ 445 (450)
T PLN02831 401 GLAVVGRVPLLTPITKENKRYLETKRTKMGHVYGSDLGGHVSGLE 445 (450)
T ss_pred CCEEEEEecccCCCChhhHHHHHHHHHHhCCcCCCCCCCcccccc
Confidence 999999999999999999999999999999999999988886643
No 2
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=1.9e-134 Score=1085.64 Aligned_cols=400 Identities=57% Similarity=0.950 Sum_probs=390.8
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|++|++||++||+|+||||+||++||||||||+|||++||+.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 4 ~~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~ 81 (555)
T PRK09319 4 EFDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTD 81 (555)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999986 777
Q ss_pred CcccceEEEeecC--CCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCC
Q 009423 187 KLCTAFTVSVDAK--YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLE 264 (535)
Q Consensus 187 ~~~taFtVsVDa~--~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~ 264 (535)
.+.++|||||||+ .|++|||||.|||+||++||+|.++|.||++|||||||++++|||+.|+|||||||||||||||.
T Consensus 82 ~~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~ 161 (555)
T PRK09319 82 SNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLY 161 (555)
T ss_pred CCCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCC
Confidence 7889999999986 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEeCCCCceEEE
Q 009423 265 PVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIA 344 (535)
Q Consensus 265 PaaVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvA 344 (535)
|++|||||+++||+||+.+++.+||++|+||+|+|+|||+||+++|.+|++++++++||.||+|++++|++..++.||+|
T Consensus 162 PaaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvA 241 (555)
T PRK09319 162 PAGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVA 241 (555)
T ss_pred ceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC--CCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchHHHhhhhhcccCC
Q 009423 345 MVKGEIGD--GQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDG 422 (535)
Q Consensus 345 Lv~Gdi~~--~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g 422 (535)
|++|++.. ++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||| ||||||||.+|+++|.||++|
T Consensus 242 LvkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~G 320 (555)
T PRK09319 242 LVKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGG 320 (555)
T ss_pred EEcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhcC
Confidence 99999963 479999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcC
Q 009423 423 HDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMG 502 (535)
Q Consensus 423 ~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~g 502 (535)
+||++||..+||+.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++|||
T Consensus 321 ~DTveAn~~lG~~~D~RdYgigAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK~~k~g 400 (555)
T PRK09319 321 LDTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLG 400 (555)
T ss_pred CChhhhhhhcCCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 009423 503 HVYGLNS 509 (535)
Q Consensus 503 H~l~~~~ 509 (535)
|+|..+.
T Consensus 401 H~l~~~~ 407 (555)
T PRK09319 401 HLLLQTY 407 (555)
T ss_pred CccCCCc
Confidence 9997653
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.2e-132 Score=1049.05 Aligned_cols=399 Identities=63% Similarity=1.041 Sum_probs=392.1
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|++|++||++||+|+||||+||++||||||||+|||.+|||.|+||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 3 ~~~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~ 80 (402)
T PRK09311 3 MFDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQD 80 (402)
T ss_pred ccchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999976 777
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.++++||||||++.|++|||||.|||+|||+||+|.++|.||++|||||||++++|||+.|+|||||||||||||||.|+
T Consensus 81 ~~~t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Pa 160 (402)
T PRK09311 81 SHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPA 160 (402)
T ss_pred CCCCceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 78899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEeCCCCceEEEEE
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv 346 (535)
+||||||++||+||+.+++.+||++|+||+++|+|||+||+++|.+|+++.+.++||.||+|++++|++..++.||+||+
T Consensus 161 avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~ALv 240 (402)
T PRK09311 161 GVICEIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALV 240 (402)
T ss_pred EEEEEEecCCCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchHHHhhhhhcccCCCCch
Q 009423 347 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTV 426 (535)
Q Consensus 347 ~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTv 426 (535)
+|++..++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||++|||||+||.+|+++|.+|++|+||+
T Consensus 241 ~Gd~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~dt~ 320 (402)
T PRK09311 241 KGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDTV 320 (402)
T ss_pred eCCCCCCCceeEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCcccchHHHHHHHHhhhhcCCChh
Confidence 99998889999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCC
Q 009423 427 EANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYG 506 (535)
Q Consensus 427 eAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~ 506 (535)
+||..+|++.|.|+||+|||||++|||++||||||||+|+.+|.+|||+|++++|++++++++|++||+||++||||+|.
T Consensus 321 ~an~~lg~~~D~Rdyg~gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~~~~~~~~n~~yl~tK~~~~gH~l~ 400 (402)
T PRK09311 321 DANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGHDLD 400 (402)
T ss_pred hhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccCCCCChhhHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 009423 507 L 507 (535)
Q Consensus 507 ~ 507 (535)
+
T Consensus 401 ~ 401 (402)
T PRK09311 401 L 401 (402)
T ss_pred C
Confidence 4
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=2e-131 Score=1032.85 Aligned_cols=383 Identities=41% Similarity=0.680 Sum_probs=370.4
Q ss_pred HHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCCCcccc
Q 009423 112 SEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTA 191 (535)
Q Consensus 112 e~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~~~~ta 191 (535)
++||++||+|+||||+|+ +||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+. |. .+++
T Consensus 2 ~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~---~~--~~~a 75 (387)
T PRK09318 2 EELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPS---NG--GETN 75 (387)
T ss_pred HHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccC---CC--CCCC
Confidence 789999999999999997 89999999999999999999999999999999999999999999999984 32 3589
Q ss_pred eEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCccEEEEE
Q 009423 192 FTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCE 271 (535)
Q Consensus 192 FtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~PaaVicE 271 (535)
|||||||+ .+|||||.|||+|||+||+ .++|.||+||||||||.+. ||++|+||||||||||||||+.|++||||
T Consensus 76 ftvsvd~~--~~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vice 150 (387)
T PRK09318 76 FFIPVDYG--TGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIVE 150 (387)
T ss_pred EEEEEcCC--CCCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEEE
Confidence 99999995 4599999999999999999 6789999999999999875 79999999999999999999999999999
Q ss_pred EeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCC
Q 009423 272 IVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIG 351 (535)
Q Consensus 272 il~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~ 351 (535)
||++||+||+.+++++||++|+||+++|+|||+||+++|++|++++++++||+||+|++++|++..++.||+|||+|++.
T Consensus 151 i~~~dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g~~~ 230 (387)
T PRK09318 151 ILDEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEPLG 230 (387)
T ss_pred EecCCCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhh
Q 009423 352 DGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEE 431 (535)
Q Consensus 352 ~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~ 431 (535)
+||||||||+|+|||+|||.+|||++||+.||++|+++| ||||||| ||||||||.+|+++|.+|++|+||++||.+
T Consensus 231 --~~vLVRVHSec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~ay~lq~~g~dt~eAn~~ 306 (387)
T PRK09318 231 --EVPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEANRA 306 (387)
T ss_pred --CCceEEEeecccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHHHhhhhcCCCchhhhhh
Confidence 489999999999999999999999999999999999999 9999998 999999999999999999999999999999
Q ss_pred cCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCCC
Q 009423 432 LGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNS 509 (535)
Q Consensus 432 LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~~ 509 (535)
||++.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++||||+|....
T Consensus 307 lg~~~D~RdygigAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl~~~~~~~n~~Yl~tK~~k~gH~l~~~~ 384 (387)
T PRK09318 307 LGFKEDERDYAAAFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGHKLELRE 384 (387)
T ss_pred cCCCccceeeeHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhHHHHHHHHHhhCCCcCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997653
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.6e-121 Score=953.83 Aligned_cols=366 Identities=43% Similarity=0.691 Sum_probs=349.9
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|++|++||++||+|+||||+||++||||||||+||+.+|||.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~ 79 (369)
T PRK12485 2 AFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGS 79 (369)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999986 788
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.++++|||||||+.|++|||||.|||+|||+||+|.++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 80 ~~~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~ 159 (369)
T PRK12485 80 VFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPA 159 (369)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCce
Confidence 88999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEeCCCCceEEEEE
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv 346 (535)
+||||||++||+||+.+++.+||++|+||+|+|+|||+||+++|.+|+++.+++|||.||+|++++|++..++.||+||+
T Consensus 160 avi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv 239 (369)
T PRK12485 160 SVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMV 239 (369)
T ss_pred EEEEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCcceEEEccCCcccccccCCCC-CChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchHHHhhhhhcccCCCCc
Q 009423 347 KGEIGDGQDILVRVHSECLTGDIFGSARC-DCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDT 425 (535)
Q Consensus 347 ~Gdi~~~~~vLVRVHSeCltgDvFGS~rC-DCg~QL~~AL~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DT 425 (535)
+|++..++||||||||+|+|||+|||++| ||+|||+.||++|+++|+|||||||+| +++|||.+|+++|..|+.+++.
T Consensus 240 ~G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~-~~~~gl~~kl~a~~~~~~~~~~ 318 (369)
T PRK12485 240 MGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANH-ESSQALLERIPQLTQPPRQYQR 318 (369)
T ss_pred eCCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCC-CchhhHHHHHHHHHhHhhCCCc
Confidence 99998889999999999999999999865 999999999999999999999999955 4669999999999877666653
Q ss_pred hhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccCCeEEEEEeecC
Q 009423 426 VEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLL 483 (535)
Q Consensus 426 veAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~ 483 (535)
.+ ..|.|+||+||||||+|||+||||| |||.|+.+|.+|||+|+++||+.
T Consensus 319 ~d-------~r~~r~ygigAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 319 SQ-------SRIYSEVGTGAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred cc-------chhhhhhhHHHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEecCC
Confidence 11 2357799999999999999999999 78999999999999999999975
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=3.4e-118 Score=929.78 Aligned_cols=364 Identities=50% Similarity=0.799 Sum_probs=355.1
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|++|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|+||+||++++|++|+||+|+.. |.+
T Consensus 2 ~~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~ 79 (367)
T PRK14019 2 TLASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGT 79 (367)
T ss_pred CCccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999986 777
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.++++||||||+++|++|||||.|||+||+.||+++++|.||++|||||||++++|||+.|+|||||||||||||||.|+
T Consensus 80 ~~~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Pa 159 (367)
T PRK14019 80 QYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPA 159 (367)
T ss_pred cCCCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCce
Confidence 78899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEeCCCCceEEEEE
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv 346 (535)
+|+|||+++||+||+.+++++||++|+||+|+|+||++||+++|++|+++.++++||+||+|++++|++..++.||+||+
T Consensus 160 avi~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Alv 239 (367)
T PRK14019 160 AVICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALV 239 (367)
T ss_pred EEEEEEecCCCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchHHHhhhhhcccCCCCch
Q 009423 347 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTV 426 (535)
Q Consensus 347 ~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTv 426 (535)
+|++..++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||| ||||||||.||+++ |+
T Consensus 240 ~Gd~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~-qegrgigl~~k~~~---------~~ 309 (367)
T PRK14019 240 KGTICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLN-CGDDGEHLLDRFRA---------EE 309 (367)
T ss_pred eCCcCCCCceeEEEeeccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEc-cCCchhhHHHhhhh---------hh
Confidence 999988889999999999999999999999999999999999999999999998 99999999999986 45
Q ss_pred hhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccCCeEEEEEeecC
Q 009423 427 EANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLL 483 (535)
Q Consensus 427 eAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~ 483 (535)
+||..+|++.|.|+||+||||||+|||++||||| ||.|+++|++|||+|++++|+.
T Consensus 310 ~an~~lg~~~d~R~y~igaqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 310 AAAALKRRPVDYRTYGIGAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred hhhhhcCCCcccceehHHHHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEecCC
Confidence 7899999999999999999999999999999999 7999999999999999999975
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=3e-115 Score=896.09 Aligned_cols=337 Identities=46% Similarity=0.710 Sum_probs=323.8
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|++|++||++||+|+||||+||++||||||||+|||++|||.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~ 79 (339)
T PRK09314 2 PIKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTS 79 (339)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999986 777
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.++|+|||||||+ +++|||||.|||+|||+||++.++|.||++|||||||++++||||+|+||||||||||||||+.|+
T Consensus 80 ~~~taFtvsVda~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~ 158 (339)
T PRK09314 80 NHETAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPV 158 (339)
T ss_pred CCCCCeEEEEecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCce
Confidence 8889999999998 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCCcccEEEEEEEeCCCCceEEEEE
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv 346 (535)
+||||||++||+||+.+++++||++|+||+++|+|||+||+++|++|+++.+++|||+||+|++++|++. ++.||+||+
T Consensus 159 ~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlALv 237 (339)
T PRK09314 159 AVICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAFK 237 (339)
T ss_pred EEEEEEecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred eccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchHHHhhhhhcccCCCCch
Q 009423 347 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTV 426 (535)
Q Consensus 347 ~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTv 426 (535)
+|++.. ||||||||+|+|||+|++ ||.+||+.||++|+++| ||||||| ||||+
T Consensus 238 ~G~~~~--~vlVRVHSec~tgd~l~~---~~~~qL~~Al~~I~~eG-GvlvYLr-qegr~-------------------- 290 (339)
T PRK09314 238 FGEIKL--TPNVKFHKIGSDFELLTS---DKFSELLKAIEYLKKNG-GVLIFLN-TESKE-------------------- 290 (339)
T ss_pred eCCCCC--CccEEEeccCChHHhhCC---CcHHHHHHHHHHHHHcC-CEEEEEc-CCCCC--------------------
Confidence 999963 899999999999999985 45599999999999999 9999999 99874
Q ss_pred hhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCC-cccccccccCCeEEEEEeec
Q 009423 427 EANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNN-PSKYVGLKGYGLAIAGRIPL 482 (535)
Q Consensus 427 eAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNN-P~K~~aL~g~GIeV~ervpl 482 (535)
+| +.|+||+|||||++|||++||||||| |+|+.+|++|||+|++++.+
T Consensus 291 -an-------~~RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~e~v~~ 339 (339)
T PRK09314 291 -NN-------QVKDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETIEL 339 (339)
T ss_pred -cc-------cccchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEEEEEeC
Confidence 22 48999999999999999999999999 99999999999999999864
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-108 Score=859.48 Aligned_cols=352 Identities=32% Similarity=0.507 Sum_probs=332.5
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.+.+|++||++||+|+||||+||++|| |||+|||.+||+.||||++|++|++|++|++++|++|+||+|.
T Consensus 16 ~~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~------- 85 (375)
T PRK08815 16 AAIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ------- 85 (375)
T ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc-------
Confidence 467899999999999999999999996 9999999999999999999999999999999999999999992
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.||++|. || +.||++||+.++++ .|.||++|||||| ||||||||||||.|+
T Consensus 86 ----~~t~~is-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Pa 136 (375)
T PRK08815 86 ----GARVALP-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPA 136 (375)
T ss_pred ----CcEEeEe-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCce
Confidence 1233332 33 36999999999999 5899999999997 999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHH-hhhhhhhhccccccCCCc-ccEEEEEEEeCCCCceEEE
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRR-KRDRLVELAAAAPIPTMW-GPFKAHCYRSLLDGIEHIA 344 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~-~~E~lV~r~~~~~lpT~~-G~F~~~~yr~~~dg~eHvA 344 (535)
|||||||++|+ + +|| +||+++|+|||+||. ++|++|++++++++||.| |+|++++|++..++.||+|
T Consensus 137 avi~Ei~~~~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~A 205 (375)
T PRK08815 137 MVAVPLPVHDE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVA 205 (375)
T ss_pred EEEEEEccCCC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEEE
Confidence 99999999743 2 777 999999999999998 889999999999999995 9999999999999999999
Q ss_pred EEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCCcchHHHhhhhhcccCCCC
Q 009423 345 MVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHD 424 (535)
Q Consensus 345 Lv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~D 424 (535)
||+|++..++||||||||+|+|||+|||.+|||++||+.||++|+++|+||||||+ |||||+||.+|+++|.+|++|+|
T Consensus 206 Lv~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl~~kl~ay~lq~~g~d 284 (375)
T PRK08815 206 IVVGQPDLSSAVPVRVHSSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYLD-QEGRGNGIAAKMRAYGYQHAGLD 284 (375)
T ss_pred EEeCCCCCCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEEc-CCCccchHHHHHHHHhhhhccCC
Confidence 99999988889999999999999999999999999999999999999999999997 99999999999999999999999
Q ss_pred chhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccCCeEEEEEeecCCCCChhhHHHHHHHHHhcCCC
Q 009423 425 TVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHV 504 (535)
Q Consensus 425 TveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~ 504 (535)
|++||..+|++.|.|+||+|||||++|||++||||||||.|+.+|++|||+|++++|+.+++|++|++||+||++||||+
T Consensus 285 t~~a~~~lg~~~D~RdygigAQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~~~~~~~~n~~yl~tK~~~~gh~ 364 (375)
T PRK08815 285 TIDADAQLGFGPDERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRITAENERYLRTKADRAGHA 364 (375)
T ss_pred chhhhhhcCCCccceeeeHHHHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhhhHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009423 505 YGLNS 509 (535)
Q Consensus 505 l~~~~ 509 (535)
|+.+.
T Consensus 365 l~~~~ 369 (375)
T PRK08815 365 LDVDA 369 (375)
T ss_pred cCccc
Confidence 97653
No 9
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-77 Score=571.98 Aligned_cols=201 Identities=60% Similarity=0.971 Sum_probs=197.0
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|.+|++||++||+|+||||+||++||||||||+||+++||+.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 2 ~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~ 79 (203)
T COG0108 2 MFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTD 79 (203)
T ss_pred chhhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999997 888
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.++|+|||||||++ |+|||||.|||.|||.|+++.+.|+||+||||||||+|++||||+|+|||||+|||||||||.|+
T Consensus 80 ~~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa 158 (203)
T COG0108 80 AHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPA 158 (203)
T ss_pred CCCCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCc
Confidence 89999999999986 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhh
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E 310 (535)
+||||||++||+||+.+++++||++|+||+++|+|||+||++.|
T Consensus 159 ~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 159 GVICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred EEEEEEeCCCccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999876
No 10
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.2e-74 Score=562.24 Aligned_cols=202 Identities=46% Similarity=0.818 Sum_probs=197.4
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|++|++||++||+|+||||+||++||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|+.. |++
T Consensus 13 ~~~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 90 (218)
T PRK00910 13 PITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNS 90 (218)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCC
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999976 777
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.++++||||||+++|++|||||.|||+|||+||++.++|+||+||||||||++++|||++|+||||||||||||||+.|+
T Consensus 91 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 170 (218)
T PRK00910 91 ANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPA 170 (218)
T ss_pred CCCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCce
Confidence 78899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhh
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E 310 (535)
+||||||++||+||+.+++++||++|+||+++|+|||+||+++|
T Consensus 171 ~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 171 GVLCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999887
No 11
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.3e-73 Score=555.49 Aligned_cols=201 Identities=50% Similarity=0.818 Sum_probs=196.1
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|++|++||++|++|+||||+||++||||||||+||+.+|||.||||++|++|+||+||++++|++|+||+|++. |++
T Consensus 12 ~~~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~ 89 (214)
T PRK01792 12 AEERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTS 89 (214)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCC
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999987 777
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.++++|||||||+.|++|||||.|||+|||+||++.++|.||++|||||||++++||||+|+||||||||||||||+.|+
T Consensus 90 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 169 (214)
T PRK01792 90 VNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEA 169 (214)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 88999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhh
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKR 309 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~ 309 (535)
+||||||++||+||+.+++++||++|+||+++|+|||+||+++
T Consensus 170 ~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 170 GVICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEEEecCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999864
No 12
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=4.1e-72 Score=548.76 Aligned_cols=201 Identities=48% Similarity=0.776 Sum_probs=196.1
Q ss_pred ccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCCCc
Q 009423 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKL 188 (535)
Q Consensus 109 ~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~~~ 188 (535)
++|++||++|++|+||||+||++||||||||++|+++|||.||||+||++|+||+||++++|++|+||+|+.. |++.+
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~ 96 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRY 96 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999986 78888
Q ss_pred ccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCccEE
Q 009423 189 CTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAV 268 (535)
Q Consensus 189 ~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~PaaV 268 (535)
+++||||||+++|++|||||.|||+|||.||++.++|+||+||||||||++++||||+|+||||||||||||||+.|++|
T Consensus 97 ~t~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~v 176 (230)
T PRK00014 97 STAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGV 176 (230)
T ss_pred CCCeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhh
Q 009423 269 LCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 311 (535)
Q Consensus 269 icEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~ 311 (535)
|||||++||+||+.+++++||++|+||+++|+|||+||+++..
T Consensus 177 icEil~~dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~~ 219 (230)
T PRK00014 177 LCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARGA 219 (230)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987654
No 13
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=1.3e-71 Score=537.35 Aligned_cols=197 Identities=53% Similarity=0.892 Sum_probs=190.8
Q ss_pred cccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCCC
Q 009423 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEK 187 (535)
Q Consensus 108 ~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~~ 187 (535)
|++|++||++||+|+||||+||++||||||||+|||++|||.||||++|++|+||+||++++|++|+||+|++. |++.
T Consensus 2 ~~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~ 79 (199)
T TIGR00506 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSA 79 (199)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999987 7878
Q ss_pred cccceEEEeecCCC-CCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 188 LCTAFTVSVDAKYG-TTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 188 ~~taFtVsVDa~~g-~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
++++||+|||+.++ ++|||||.|||+|||+|+++.++|.||+||||||||++++||||+|+||||||||||||||+.|+
T Consensus 80 ~~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~ 159 (199)
T TIGR00506 80 SGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPA 159 (199)
T ss_pred CCCceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCce
Confidence 89998888886665 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHH
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr 306 (535)
+||||||++||+||+.+++++||++|+||+++|+|||+||
T Consensus 160 ~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 160 GVICEMMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 9999999999999999999999999999999999999996
No 14
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=1.3e-71 Score=536.11 Aligned_cols=194 Identities=63% Similarity=0.984 Sum_probs=180.2
Q ss_pred HHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCCCccc
Q 009423 111 ISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCT 190 (535)
Q Consensus 111 Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~~~~t 190 (535)
|++||++|++|+||||+||++||||||||++|+.+||+.|+||++|++|+||+||++++|++|+||+|+.. |++.+++
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~ 78 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGT 78 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS-
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999995 7888899
Q ss_pred ceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCccEEEE
Q 009423 191 AFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLC 270 (535)
Q Consensus 191 aFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~PaaVic 270 (535)
+|+|||||+.|++|||||.|||+||++||+++++|+||++|||||||++++|||++|+||||||||||||||+.|++|||
T Consensus 79 ~ftvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~ 158 (194)
T PF00926_consen 79 AFTVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVIC 158 (194)
T ss_dssp -BBCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEE
T ss_pred CeeEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHH
Q 009423 271 EIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (535)
Q Consensus 271 Eil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr 306 (535)
|||++||+||+.+++++||++|+||+|+|+|||+||
T Consensus 159 eil~~dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 159 EILDDDGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp EBBETTSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred EEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 999999999999999999999999999999999997
No 15
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-71 Score=564.64 Aligned_cols=333 Identities=53% Similarity=0.749 Sum_probs=324.5
Q ss_pred cccccccccccccccccccCC-CCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCC
Q 009423 67 TAIETQSDTIGFGTLGAEITP-KTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLV 145 (535)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~ 145 (535)
..++.+++..+|+|++++|.| +++.|++.|.++++|+|+..|.+|+++|+.+|.|++|+|+||++||||+||++++..+
T Consensus 21 ~p~~~r~~i~s~~~~~s~~~p~~~d~~~~~d~e~~~~~~~~~~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~ 100 (357)
T KOG1284|consen 21 KPLESRPDIDSTYTVNSRIDPFPMDWGAATDEEGGPDRLPRVFCSIPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNV 100 (357)
T ss_pred CcccccCccccccccccccCCccccccccccccCCCCCcccceechhhhhhcccCCcEEEEEecccccCCCCcceecccc
Confidence 347789999999999999999 7899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCCCcccceEEEeecCCCCCCCCChhhHHHHHHHHhc-CCCC
Q 009423 146 TPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALAC-RDSK 224 (535)
Q Consensus 146 Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~-p~s~ 224 (535)
+++.++|.++|++|++|+.|..+...+|.||+|+....+++...++||++||++++++||||+.||+.|++.|++ ..+.
T Consensus 101 ~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~ 180 (357)
T KOG1284|consen 101 IREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITVDRAHGTVTGVSAHDEAYTGETLASARCDC 180 (357)
T ss_pred cchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEEehhcCccceeEEecccccchhhcccccCC
Confidence 999999999999999999999999999999999997667788899999999999999999999999999999999 6788
Q ss_pred CCCccCCCCccceeec-cCCcccccchhHHHHHHHHHcCCCccEEEEEEeCC-CCCccChhHHHHHHHhcCCceecHHHH
Q 009423 225 PEDFNRPGHIFPLKYR-EGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADL 302 (535)
Q Consensus 225 p~Df~rPGHVfPL~a~-~gGvl~R~GhtEAAvDLarLAGl~PaaVicEil~~-dG~ma~~~el~~fA~~h~L~ivsi~DL 302 (535)
|+||.||||++|++++ +|||++|.|||||+||||.++|+.|.+++||++++ +|.|++.++++.||.+|++|+++|+|+
T Consensus 181 pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dl 260 (357)
T KOG1284|consen 181 PEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDL 260 (357)
T ss_pred hhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccHhhhhHhhcCChhhhhhH
Confidence 9999999999999999 69999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHH
Q 009423 303 IRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLA 382 (535)
Q Consensus 303 i~yr~~~E~lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~ 382 (535)
|+|++++...|+++..++.||+||.|..++|++..++.||++.++|.+..+..++||+|++|+++|+||+.+|+|+.||+
T Consensus 261 iryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~~kie~r~h~e~l~~~i~~~~~~t~~sq~~ 340 (357)
T KOG1284|consen 261 IRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLGTKIEVRGHLECLPDDIFGNRKRTGGSQLN 340 (357)
T ss_pred HHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeechhhhheeehhcccchhcCCcCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEEEE
Q 009423 383 LAMKQIEAAGRGVLVYL 399 (535)
Q Consensus 383 ~AL~~I~~~G~GVlVYL 399 (535)
.+|++|+++|+|+++||
T Consensus 341 ~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 341 YFMRTIEAAGRGVFVAL 357 (357)
T ss_pred HHHHHHHhhcceeEEeC
Confidence 99999999999999996
No 16
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-68 Score=513.76 Aligned_cols=192 Identities=57% Similarity=1.010 Sum_probs=188.6
Q ss_pred hhhhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 009423 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 391 (535)
Q Consensus 312 lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~ 391 (535)
.++++.+++|||.||+|++++|++..++.+|+|+|+|++.+ +||||||||||+|||+|||.+|||++||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 57889999999999999999999999999999999999976 79999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCccccccccc
Q 009423 392 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 471 (535)
Q Consensus 392 G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g 471 (535)
|+||||||| ||||||||.+|++||.|||+|.||++||.++||+.|+|+||+|||||+||||++||||||||+|+.+|.+
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigAqIL~dLGI~~irLLtnnp~K~~~l~~ 159 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEG 159 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 009423 472 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 505 (535)
Q Consensus 472 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 505 (535)
|||+|++|+|++...|++|+.||+||++||||++
T Consensus 160 ~Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~~ 193 (193)
T COG0807 160 FGINVVERVPLIVGANPENEFYLKTKKEKMGHLL 193 (193)
T ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999986
No 17
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.3e-67 Score=516.15 Aligned_cols=202 Identities=50% Similarity=0.885 Sum_probs=197.5
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
.|.+|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|+||++|++++|++|+||+|+.. |++
T Consensus 12 ~~~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~ 89 (217)
T PRK03353 12 PFERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTS 89 (217)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999986 788
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCcc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~Pa 266 (535)
.++++||||||++.|++|||||.|||+|||.|+++.++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 90 ~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~ 169 (217)
T PRK03353 90 QYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPA 169 (217)
T ss_pred CCCCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCce
Confidence 88899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhh
Q 009423 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (535)
Q Consensus 267 aVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E 310 (535)
+||||||++||+|++.+++.+||++|+||+|+|+|||+||+++|
T Consensus 170 avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 170 GVLCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEEEeecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999877
No 18
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=1.3e-66 Score=508.55 Aligned_cols=193 Identities=28% Similarity=0.424 Sum_probs=179.3
Q ss_pred cHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCC------
Q 009423 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKD------ 183 (535)
Q Consensus 110 ~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~------ 183 (535)
+|++||++||+|+||||+||++||||||||+||+++|||.||||++|++|+||+||++++|++|+||+|++...
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~ 81 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYR 81 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999987622
Q ss_pred ---CCCCcc--cceEEEeecCCCCCCCCChhhHHHHHHHHhcC--------CCC----CCCccCCCCccceeeccCCccc
Q 009423 184 ---NEEKLC--TAFTVSVDAKYGTTTGVSANDRAKTVLALACR--------DSK----PEDFNRPGHIFPLKYREGGVLK 246 (535)
Q Consensus 184 ---n~~~~~--taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p--------~s~----p~Df~rPGHVfPL~a~~gGvl~ 246 (535)
|++.++ ++|||||||+ |++|||||.|||+|||+||++ ... |.||++|||||||+++ ||++
T Consensus 82 ~~~~~~~~~~~taFtvsVd~~-~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~ 158 (219)
T PRK05773 82 KLVKKPSYGDEPAFSLWVNHV-KTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRE 158 (219)
T ss_pred cccccCCCCCCceEEEEEcCC-CCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--cccc
Confidence 334444 7999999984 999999999999999999983 222 7999999999999998 8999
Q ss_pred ccchhHHHHHHHHHcCCCccEEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHH
Q 009423 247 RAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 306 (535)
Q Consensus 247 R~GhtEAAvDLarLAGl~PaaVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr 306 (535)
|+||||||||||||||+.|++|||||||++ .|++++++++||++|+||+|+|+|||+|.
T Consensus 159 R~GHTEasvdLa~lAGl~P~~vicEil~~~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 159 RRGHTELSIALAQAAGLEPSAVIAEMLDEK-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred CCChhHHHHHHHHHcCCCccEEEEEEeCCC-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 999999999999999999999999999974 59999999999999999999999999974
No 19
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=1.3e-59 Score=453.72 Aligned_cols=196 Identities=49% Similarity=0.855 Sum_probs=189.6
Q ss_pred hhhhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 009423 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 391 (535)
Q Consensus 312 lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~ 391 (535)
.|+++++.++||.||+|++++|++..++.+|+|||+|++.+++|||||||++|+++|+|++.+|||++||+.||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 37899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCccccccccc
Q 009423 392 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 471 (535)
Q Consensus 392 G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g 471 (535)
|+||||||+ |+|||+|+.+|+++|.+|+.|.||+++|..+|++.|.|+||+|||||++|||++||||||||.|+.+|.+
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~mrLLtn~~~k~~~L~g 160 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTE 160 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHh
Confidence 999999998 8999999999999999999888999999889999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCC
Q 009423 472 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLN 508 (535)
Q Consensus 472 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~ 508 (535)
|||+|++++|++++.+++|++||+||++||||.+.+|
T Consensus 161 ~GleV~~~~~~~~~~~~~~~~y~~~k~~~~~h~l~~~ 197 (197)
T PRK00393 161 AGINIVERVPLIVGRNPHNEHYLKTKAEKMGHLLSLD 197 (197)
T ss_pred CCCEEEEEecccCCCCchhhHHHHHHHHhhcCCCCCC
Confidence 9999999999988999999999999999999999875
No 20
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=1.5e-58 Score=444.44 Aligned_cols=191 Identities=53% Similarity=0.867 Sum_probs=185.0
Q ss_pred hhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhCC
Q 009423 314 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGR 393 (535)
Q Consensus 314 ~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~ 393 (535)
+++.+.++||.||+|++++|++..++.+|+|||+|++.++.|||||||++|.++|+|++.+|||++||+.||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccCC
Q 009423 394 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYG 473 (535)
Q Consensus 394 GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~G 473 (535)
||||||+ |+|||+|+.+|+++|++|+.|.||+++|..+|++.|.|+||+|||||+||||++||||||||.|+.+|++||
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~~rLLtn~~~k~~~L~g~g 159 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAG 159 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 009423 474 LAIAGRIPLLTPITMENKRYLETKRAKMGHVY 505 (535)
Q Consensus 474 IeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 505 (535)
|+|++++|++...+++|..||.||++||||.+
T Consensus 160 leVv~~~~~~~~~~~~~~~y~~~k~~~~~h~~ 191 (191)
T TIGR00505 160 INIVERVPLIVGRNENNEGYLDTKAEKMGHLL 191 (191)
T ss_pred CEEEEEeccccCCCcchHHHHHHHHHhhCCCC
Confidence 99999999888889999999999999999975
No 21
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=9e-58 Score=431.22 Aligned_cols=169 Identities=66% Similarity=1.138 Sum_probs=137.8
Q ss_pred hhhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhC
Q 009423 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 392 (535)
Q Consensus 313 V~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G 392 (535)
|+|+.+.++||+||+|++++|++..++.+|+|||+|++.+++||||||||+|++||+||+.+|||+|||+.||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccC
Q 009423 393 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGY 472 (535)
Q Consensus 393 ~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~ 472 (535)
+||||||+ ||+||+|+.+|+++|++|++|.||++||..+|++.|.|+||+|||||+||||++||||||||.|+.+|++|
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 99999997 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeec
Q 009423 473 GLAIAGRIPL 482 (535)
Q Consensus 473 GIeV~ervpl 482 (535)
||+|+++||+
T Consensus 160 gleV~~~vp~ 169 (169)
T PF00925_consen 160 GLEVVERVPL 169 (169)
T ss_dssp T--EEEEE--
T ss_pred CCEEEEEecC
Confidence 9999999996
No 22
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=2.2e-55 Score=422.73 Aligned_cols=193 Identities=59% Similarity=1.024 Sum_probs=185.3
Q ss_pred hhhhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHh
Q 009423 312 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 391 (535)
Q Consensus 312 lV~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~ 391 (535)
+|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|+++|+|++.+|||++||+.||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCccccccccc
Q 009423 392 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 471 (535)
Q Consensus 392 G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g 471 (535)
|+||||||+ |++++.|+.+|+++|.+|+++.++.+++..++++.|.|+||+|||||++|||++||||||||.|+.+|.|
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~dLGv~~mrLLs~~~~k~~~L~g 159 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEG 159 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHHHHHHHcCCCeEEECCCCHHHHHHHHh
Confidence 999999998 8999999999999999998888888887788899999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 009423 472 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 505 (535)
Q Consensus 472 ~GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l 505 (535)
|||+|++++|++.+.+++|++||.+|++||+|++
T Consensus 160 fglevv~~~~~~~~~~~~~~~y~~~k~~~~~~~~ 193 (193)
T cd00641 160 YGIEVVERVPLEVEPNEENKGYLKTKRDKMGHLL 193 (193)
T ss_pred CCCEEEEEeccCCCCChhhHHHHHhhHHhhccCC
Confidence 9999999999888889999999999999999985
No 23
>PRK07198 hypothetical protein; Validated
Probab=100.00 E-value=1.4e-41 Score=352.66 Aligned_cols=222 Identities=25% Similarity=0.420 Sum_probs=172.7
Q ss_pred HcCCCccEEEEEEeCCCCCcc-------ChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhcccc--ccCCCcccEEE
Q 009423 260 LAGLEPVAVLCEIVDDDGSMA-------RLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAA--PIPTMWGPFKA 330 (535)
Q Consensus 260 LAGl~PaaVicEil~~dG~ma-------~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~r~~~~--~lpT~~G~F~~ 330 (535)
...|.|-+-|| ++.|+.. ..=+|--.|+++|+. -.+|. ..+.|.+.-- .|-|+ -++
T Consensus 148 ~g~l~~dg~i~---~~~g~~~vtk~av~pvwylpgva~rfg~~---e~~lr------r~lfe~t~g~~pel~t~---~~~ 212 (418)
T PRK07198 148 AGRLKPDGKIL---LANGDVVVTKAAIEPVWYLPGVAERFGVS---ETDLR------RTLFEQTGGMFPELVTR---PDL 212 (418)
T ss_pred cCCCCCCCeee---cCCCcEEEEEeeecccccccchHHHcCCC---HHHHH------HHHHHHcCCCCceeeec---cce
Confidence 34566666664 2444322 222456677888754 22332 2344443221 23332 368
Q ss_pred EEEEeCCCCceEEEEEeccCCC----CCcceEEEccCCcccccccCCCCCChHHH----HHHHHHHHHhCCeEEEEEeCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGD----GQDILVRVHSECLTGDIFGSARCDCGNQL----ALAMKQIEAAGRGVLVYLRGH 402 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~----~~~vLVRVHSeCltgDvFGS~rCDCg~QL----~~AL~~I~~~G~GVlVYLr~q 402 (535)
++|+....+.+| +++|++.. ..||||||||+|++||+|||.+|||++|| +.||++|+++|+||||||+ |
T Consensus 213 ~vf~p~~gg~~~--~i~G~p~~~~d~~~PVLVRVHSeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLr-Q 289 (418)
T PRK07198 213 EVFLPPIGGQTV--YIFGDVTDLADPETELTCRVHDECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR-K 289 (418)
T ss_pred EEEcCCCCCeeE--EEECCcccccCCCCCceEEEeccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeC-C
Confidence 999999999995 48999853 56899999999999999999999999985 6889999999999999998 9
Q ss_pred CCCCcchHHHhhhhhcccC--CCCchhhh----hhcCCCCCccChhHHHHHHHHcCCCee-ecccCCcccccccccCCeE
Q 009423 403 EGRGIGLGHKLRAYNLQDD--GHDTVEAN----EELGLPVDSREYGIGAQILRDLGVRTM-KLMTNNPSKYVGLKGYGLA 475 (535)
Q Consensus 403 EGRGiGL~~Kl~ay~LQd~--g~DTveAn----~~LG~~~D~RdYgigAQILrdLGV~kI-rLLTNNP~K~~aL~g~GIe 475 (535)
|||++||.+|+++|++|+. |.||+++| ..++...|.|+||+|||||++|||+|| |||||||+|+.+|.+|||+
T Consensus 290 EGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~~D~RdyGlGAQILrdLGV~Km~RLLTNnp~K~~gL~GfGLE 369 (418)
T PRK07198 290 EGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGVQDMRFQELMPDVLHWLGIRRIHRLVSMSNMKYDAITGSGIE 369 (418)
T ss_pred CCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCCCcceehhHHHHHHHHhCCChhhhhcCCCHHHHHHHHhCCCE
Confidence 9999999999999999853 89999975 233334699999999999999999999 9999999999999999999
Q ss_pred EEEEeecCCCCChhh-HHHHHHHHH
Q 009423 476 IAGRIPLLTPITMEN-KRYLETKRA 499 (535)
Q Consensus 476 V~ervpl~~~~~~~n-~~YL~tK~~ 499 (535)
|++++|++...+++. .--+++|..
T Consensus 370 VVErVpl~~~~~p~d~~vei~ak~~ 394 (418)
T PRK07198 370 VGERVPIPDELIPADARVEIDAKKA 394 (418)
T ss_pred EEEEeccCcCCCccccccchhhhhh
Confidence 999999998888764 345666655
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.66 E-value=1.7e-17 Score=170.11 Aligned_cols=192 Identities=25% Similarity=0.300 Sum_probs=161.6
Q ss_pred hccccccCC-CcccEEEEEEEeCCCCceEEEEEeccC-------------------------------------------
Q 009423 315 LAAAAPIPT-MWGPFKAHCYRSLLDGIEHIAMVKGEI------------------------------------------- 350 (535)
Q Consensus 315 r~~~~~lpT-~~G~F~~~~yr~~~dg~eHvALv~Gdi------------------------------------------- 350 (535)
.+...++|+ ++|+|-++.|....++.+|++++.|+.
T Consensus 64 ~si~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~ 143 (357)
T KOG1284|consen 64 CSIPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETY 143 (357)
T ss_pred echhhhhhcccCCcEEEEEecccccCCCCcceecccccchhhhhhhhcCCceechhhhhccccccccccccccccccccc
Confidence 334445554 478888888888888888888877754
Q ss_pred ----------CCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHH---H-hCCeEEEEEeCCCCCCcchHHHhhhh
Q 009423 351 ----------GDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIE---A-AGRGVLVYLRGHEGRGIGLGHKLRAY 416 (535)
Q Consensus 351 ----------~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~---~-~G~GVlVYLr~qEGRGiGL~~Kl~ay 416 (535)
..+..++||.|++|.|+..++|.+|+|+.|++.+=..|. + .| |||.|++ |+++|++|..|+++|
T Consensus 144 ~~~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~ 221 (357)
T KOG1284|consen 144 ETAFTITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLY 221 (357)
T ss_pred ccceeEEEehhcCccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCC
Confidence 234458999999999999999999999999999888877 6 57 9999997 999999999999999
Q ss_pred hcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccCC--eEEEEEeecCCCC---C----
Q 009423 417 NLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYG--LAIAGRIPLLTPI---T---- 487 (535)
Q Consensus 417 ~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~G--IeV~ervpl~~~~---~---- 487 (535)
+||+-|-+++++|.-+-+++|.|.|+..-.|+-+++..-+|+|+|||+|++.....- ...++|+++.... .
T Consensus 222 pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i 301 (357)
T KOG1284|consen 222 PLGVLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGI 301 (357)
T ss_pred chhhhhhhhhcCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccc
Confidence 999999999999999999999999999999999999999999999999999887765 5567777754321 1
Q ss_pred --hhhHHHHHHHHHhcCCCCCCC
Q 009423 488 --MENKRYLETKRAKMGHVYGLN 508 (535)
Q Consensus 488 --~~n~~YL~tK~~k~gH~l~~~ 508 (535)
.+=.-|+.||.++|||.....
T Consensus 302 ~~~~g~v~~~~kie~r~h~e~l~ 324 (357)
T KOG1284|consen 302 ASVEGEVYLGTKIEVRGHLECLP 324 (357)
T ss_pred cccceEEeechhhhheeehhccc
Confidence 122569999999999998654
No 25
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=83.72 E-value=3.6 Score=43.94 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=63.0
Q ss_pred EEEEeCCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~~~~vLVR-----VHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGR 405 (535)
+.|+...+ ...++++.|-=++.+|.-.= +=+.|..||||-|-. ..|.-.|++.+. .|.|||+...|-.
T Consensus 35 vv~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~-~~~GvL~iv~NYt-- 107 (331)
T PRK14481 35 VIVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVD-TGAGVLLIVKNYS-- 107 (331)
T ss_pred EEEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcH--
Confidence 35555444 56899999865555652111 223478899998886 479999999986 4679998876433
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCe
Q 009423 406 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRT 455 (535)
Q Consensus 406 GiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~k 455 (535)
-|--+|++++++++.-|++-
T Consensus 108 ------------------------------GD~lnF~lA~E~a~~eGi~v 127 (331)
T PRK14481 108 ------------------------------GDVMNFEMAAELAEMEGIEV 127 (331)
T ss_pred ------------------------------HHhccHHHHHHHHHhCCCCE
Confidence 26778999999999999963
No 26
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=82.63 E-value=3.4 Score=47.12 Aligned_cols=88 Identities=19% Similarity=0.406 Sum_probs=64.2
Q ss_pred EEEEeCCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~~~~vLVR-----VHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGR 405 (535)
++|+...+ ...++||.|-=++.+|-..= +=+.+..||||-|-. ..|.-.+++.+...|.|||+.+.|-.|
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYtG- 107 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYTG- 107 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccHH-
Confidence 56665444 57899999875555662111 223477899998876 579999999998757899988864332
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 009423 406 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 454 (535)
Q Consensus 406 GiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 454 (535)
|--+||+++++++.-|++
T Consensus 108 -------------------------------D~lnF~~A~e~a~~eg~~ 125 (574)
T TIGR02361 108 -------------------------------DRLNFGLAAEKAKAEGYN 125 (574)
T ss_pred -------------------------------HhhhHHHHHHHHHhCCCc
Confidence 667899999999999985
No 27
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=79.73 E-value=6.5 Score=42.41 Aligned_cols=88 Identities=22% Similarity=0.361 Sum_probs=61.3
Q ss_pred EEEEeCCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~~~~vLVR-----VHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGR 405 (535)
+.|+........++||.|-=++.+|.-.= +=+.+..||||-|-. ..|.-.|++.+. .|.|||+...|-.|
T Consensus 34 vv~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYtG- 108 (356)
T PRK11468 34 YVTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYTG- 108 (356)
T ss_pred EEEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH-
Confidence 34554444356799999875555663111 223477899998876 579999999965 56799988864333
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 009423 406 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 454 (535)
Q Consensus 406 GiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 454 (535)
|--+|++++++++.-|++
T Consensus 109 -------------------------------DvlNF~mAaE~a~~eGi~ 126 (356)
T PRK11468 109 -------------------------------DVLNFETATELLHDSGVK 126 (356)
T ss_pred -------------------------------hhccHHHHHHHHHhCCCc
Confidence 667789999999888885
No 28
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=78.36 E-value=6.4 Score=41.97 Aligned_cols=87 Identities=24% Similarity=0.409 Sum_probs=62.0
Q ss_pred EEEEeCCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~~~~vLVR-----VHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGR 405 (535)
+.|+...+ ...++|+.|-=++.+|.-.= +=+.+..||||-|-. .+|.-.|++.+. .|.|||+...|-.|
T Consensus 32 vv~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~-~~~GvL~ivkNYtG- 105 (326)
T TIGR02362 32 GIYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVD-RGKGVFVIIKNFEA- 105 (326)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhc-CCCCEEEEeccCHH-
Confidence 34554444 57899999865555663111 223477899999886 479999999976 46799988764332
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 009423 406 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 454 (535)
Q Consensus 406 GiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 454 (535)
|--+|+++++.++.-|++
T Consensus 106 -------------------------------D~lNF~mA~E~a~~eGi~ 123 (326)
T TIGR02362 106 -------------------------------DLSEFSQAIQQARQEGRQ 123 (326)
T ss_pred -------------------------------HHhhHHHHHHHHHHcCCc
Confidence 667899999999999986
No 29
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=77.74 E-value=6.7 Score=41.89 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=63.0
Q ss_pred EEEEeCCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~~~~vLVR-----VHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGR 405 (535)
+.|+...+....++++.|-=++.+|.-.= +=+.|..||||-|-. ..|.-.+++.+.. |.|||+...|-.
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NYt-- 108 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNYT-- 108 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcH--
Confidence 45665544356899999875555663111 223477899998876 5789999988765 679998876433
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 009423 406 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 454 (535)
Q Consensus 406 GiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 454 (535)
-|--+||++++.++.-|++
T Consensus 109 ------------------------------GD~lnF~mA~E~a~~eGi~ 127 (329)
T TIGR02363 109 ------------------------------GDVMNFEMAAELAEDEGIK 127 (329)
T ss_pred ------------------------------HHhccHHHHHHHHHHcCCc
Confidence 2677899999999999985
No 30
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=76.18 E-value=2.6 Score=44.84 Aligned_cols=86 Identities=24% Similarity=0.503 Sum_probs=54.0
Q ss_pred EEEeCCCCceEEEEEeccCCCCCcceE-----EEccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCCC
Q 009423 332 CYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 406 (535)
Q Consensus 332 ~yr~~~dg~eHvALv~Gdi~~~~~vLV-----RVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGRG 406 (535)
+|+... ....++|+.|-=+..+|... =+=+.|..||+|-|-. ..|.-.|++.+ ..+.|||+.+.|-.|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG-- 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG-- 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH--
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH--
Confidence 455443 66788999876555555211 1223467899998875 57999999998 567799988864332
Q ss_pred cchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 009423 407 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 454 (535)
Q Consensus 407 iGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 454 (535)
|--+||+++++++.-|++
T Consensus 93 ------------------------------D~lNF~~A~E~a~~~Gi~ 110 (325)
T PF02733_consen 93 ------------------------------DVLNFGMAAEKARAEGIK 110 (325)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTT--
T ss_pred ------------------------------HHhhHHHHHHHHHhCCCC
Confidence 556799999999999884
No 31
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=75.36 E-value=9.9 Score=42.49 Aligned_cols=158 Identities=26% Similarity=0.348 Sum_probs=94.7
Q ss_pred HHHHHHHHcCcEEEEEeCCCCCCcccEEEEc-----CCCCHHHHHHHHH----------hCCCcEEeecChhhHhhcCCC
Q 009423 112 SEAIEDIRQGKLVIVVDDEDRENEGDLIMAA-----SLVTPEAMAFIVR----------HGTGIVCVSMKGEDLERLELP 176 (535)
Q Consensus 112 e~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AA-----e~~Tpe~v~fm~r----------~~~Glicva~~~~~~~rL~Lp 176 (535)
++.-+||++|+|||..+. -++.-+ -..|+-.+...+| -..|.+|+-++++.+..|++.
T Consensus 30 pqv~eal~~~epVVales-------tiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~ 102 (614)
T KOG3009|consen 30 PQVKEALANGEPVVALES-------TIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASS 102 (614)
T ss_pred HHHHHHHhcCCCEEEeEe-------eeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhc
Confidence 578889999999998764 122211 1112222333233 236999999999999999875
Q ss_pred cccccCCCCCCcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchh-HHHH
Q 009423 177 LMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHT-EASV 255 (535)
Q Consensus 177 ~M~~~~~n~~~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~Ght-EAAv 255 (535)
.-... .-+...-++++.+-.. |-||+-.+ + -+|.. ..-.=|..||- |||-+-+-|+ .++-
T Consensus 103 g~~~~--kvsrRD~~~v~i~rlv-ggTtvaaT------m-~iA~~-~gI~vfaTggi--------ggvhr~An~smdisa 163 (614)
T KOG3009|consen 103 GPSAV--KVSRRDIASVVIVRLV-GGTTVAAT------M-IIAHA-AGIVVFATGGI--------GGVHRGANQSMDISA 163 (614)
T ss_pred Ccccc--ccccccccccceeeec-CCcchhhh------h-hhccc-ceEEEEecCCc--------chhhhccccccchhh
Confidence 43111 1122345677777654 44444222 1 11111 12234666663 6654433334 5667
Q ss_pred HHHHHcCCCccEEEEEEeCCCCCccChhHHHHHHHhcCCceecH
Q 009423 256 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 299 (535)
Q Consensus 256 DLarLAGl~PaaVicEil~~dG~ma~~~el~~fA~~h~L~ivsi 299 (535)
||-.| |-.|++|+|+=|. +..+.+...+|-+.++.++++.
T Consensus 164 dl~el-grtpvavv~agvk---siLdip~tle~letq~V~vvtl 203 (614)
T KOG3009|consen 164 DLTEL-GRTPVAVVSAGVK---SILDIPKTLEYLETQGVVVVTL 203 (614)
T ss_pred hhhhh-cCCcceEEecchh---hhccchhhhhhhccccEEEEEe
Confidence 77776 8899999998553 4666777788888888887764
No 32
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=75.09 E-value=7.6 Score=44.29 Aligned_cols=87 Identities=22% Similarity=0.402 Sum_probs=61.9
Q ss_pred EEEEeCCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~~~~vLVR-----VHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGR 405 (535)
+.|+...+ ...++||.|-=++.+|-..= +=+.|..||||-|-. ..|.-.+++.+. .|.|||+...|-.|
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYtG- 107 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAAD-GGAGVLLIVGNYAG- 107 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcHH-
Confidence 34554443 46899999875555663111 223477899998876 579999998886 56799988764332
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 009423 406 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 454 (535)
Q Consensus 406 GiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 454 (535)
|--+|++++++++.-|++
T Consensus 108 -------------------------------D~lnF~~A~e~a~~~g~~ 125 (568)
T PRK14479 108 -------------------------------DVMNFGLAAELARAEGID 125 (568)
T ss_pred -------------------------------HHhhHHHHHHHHHhcCCc
Confidence 667899999999999985
No 33
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=70.97 E-value=12 Score=39.96 Aligned_cols=87 Identities=21% Similarity=0.371 Sum_probs=61.7
Q ss_pred EEEEeCCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~~~~vLVR-----VHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGR 405 (535)
+.|+.... ...++||.|-=++.+|.-.= +=+.|..||||-|-. .+|.-.|++.+.. |.|||+...|-.|
T Consensus 34 vv~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~~-~~GvL~ivkNYtG- 107 (329)
T PRK14483 34 YVYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVPK-GKGVFFIIKNFEA- 107 (329)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhcC-CCCEEEEecccHH-
Confidence 35565443 57899999865555663111 223477899998876 5799999988764 5799988764332
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 009423 406 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 454 (535)
Q Consensus 406 GiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 454 (535)
|--+|++++++++.-|++
T Consensus 108 -------------------------------DvlnF~mA~E~a~~eGi~ 125 (329)
T PRK14483 108 -------------------------------DVAEFSAAIQIARQEGRQ 125 (329)
T ss_pred -------------------------------HhhhHHHHHHHHHhCCCc
Confidence 566799999999998885
No 34
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=67.97 E-value=13 Score=42.51 Aligned_cols=87 Identities=17% Similarity=0.328 Sum_probs=61.6
Q ss_pred EEEEeCCCCceEEEEEeccCCCCCcceEE-----EccCCcccccccCCCCCChHHHHHHHHHHHHhCCeEEEEEeCCCCC
Q 009423 331 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 405 (535)
Q Consensus 331 ~~yr~~~dg~eHvALv~Gdi~~~~~vLVR-----VHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G~GVlVYLr~qEGR 405 (535)
+.|+...+ ...++||.|-=.+.+|.-.= +=+.+..||||-|-. ..|.-.+++.+. .|.|||+...|-.|
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYtG- 110 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYTG- 110 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccHH-
Confidence 45565443 56899999875555663111 123467799998876 579999999775 56799988864333
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 009423 406 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 454 (535)
Q Consensus 406 GiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~ 454 (535)
|--+||++++.++.-|++
T Consensus 111 -------------------------------D~lnF~lA~e~a~~eGi~ 128 (584)
T PTZ00375 111 -------------------------------DILNFELAVEQARARGIQ 128 (584)
T ss_pred -------------------------------HHhhHHHHHHHHHhCCCc
Confidence 667899999999998885
No 35
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=45.55 E-value=26 Score=29.53 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=18.1
Q ss_pred cHHHHHHHHHcCcEEEEEeCC
Q 009423 110 SISEAIEDIRQGKLVIVVDDE 130 (535)
Q Consensus 110 ~Ie~Ai~aLr~G~~Vvv~Dde 130 (535)
.|++...+|++|+.||++|.+
T Consensus 38 kv~qv~~qL~~G~avI~~se~ 58 (70)
T PF06794_consen 38 KVEQVKQQLKSGEAVIVFSEL 58 (70)
T ss_dssp HHHHHHHHHHTTSEEEEE-TT
T ss_pred HHHHHHHHHHcCCEEEEECCc
Confidence 589999999999999999864
No 36
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=44.64 E-value=1.1e+02 Score=34.81 Aligned_cols=94 Identities=22% Similarity=0.433 Sum_probs=69.2
Q ss_pred cccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccC---------CcccccccCCCCCChHHHHHHHHHHHHhCCeE
Q 009423 325 WGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSE---------CLTGDIFGSARCDCGNQLALAMKQIEAAGRGV 395 (535)
Q Consensus 325 ~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSe---------CltgDvFGS~rCDCg~QL~~AL~~I~~~G~GV 395 (535)
+-+-+.+.|++......|++|+.|-=...+|. |.. -.-||||-|.. -.|...|++.++ .-.|.
T Consensus 31 ~~~~r~vl~~~~~~~~~kValiSGGGSGHEPt----HAGfVGkGmLtaai~G~iFASPs---tkqI~aairaV~-~~~Gt 102 (582)
T KOG2426|consen 31 HPEDRVVLFRDASAPKPKVALISGGGSGHEPT----HAGFVGKGMLTAAIAGDIFASPS---TKQILAAIRAVE-GEAGT 102 (582)
T ss_pred cccceEEEEeecCCCCCceEEEeCCCCCCCcc----cccccccchhhhhhhcccccCCc---HHHHHHHHHHhc-cCCce
Confidence 44557888998776668999999876666763 544 34689998875 369999999994 34699
Q ss_pred EEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecc
Q 009423 396 LVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLM 459 (535)
Q Consensus 396 lVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLL 459 (535)
||+..|=.| |-=.||++|.=-|..|++ ++|+
T Consensus 103 LlIVKNYTG--------------------------------D~LhFGLAaErara~G~~-ve~v 133 (582)
T KOG2426|consen 103 LLIVKNYTG--------------------------------DRLHFGLAAERARAAGIK-VELV 133 (582)
T ss_pred EEEEecccc--------------------------------ceeehhhhHHHHHhcCCc-eEEE
Confidence 998874322 555789999888999884 4443
No 37
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=43.48 E-value=6.4 Score=34.37 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=32.3
Q ss_pred HHHHHHcCCCeeecccCCccc-----ccccccCCeEEEEEeecCCCCChhhHHHHHHH
Q 009423 445 AQILRDLGVRTMKLMTNNPSK-----YVGLKGYGLAIAGRIPLLTPITMENKRYLETK 497 (535)
Q Consensus 445 AQILrdLGV~kIrLLTNNP~K-----~~aL~g~GIeV~ervpl~~~~~~~n~~YL~tK 497 (535)
.+-|++.| +++.++|||+.+ .+.|+..||++.. --+..+..--..||+.+
T Consensus 23 l~~L~~~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~--~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 23 LDALRERG-KPVVFLTNNSSRSREEYAKKLKKLGIPVDE--DEIITSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHTT-SEEEEEES-SSS-HHHHHHHHHHTTTT--G--GGEEEHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHhcCcCCCc--CEEEChHHHHHHHHHhc
Confidence 44567777 589999999866 4567899999754 12223345668888874
No 38
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.94 E-value=72 Score=33.81 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHcCcEEEEEeCCC-CCCcccE--EEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCC
Q 009423 109 ASISEAIEDIRQGKLVIVVDDED-RENEGDL--IMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNE 185 (535)
Q Consensus 109 ~~Ie~Ai~aLr~G~~Vvv~Dde~-REnEgdL--V~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~ 185 (535)
..|...|++||+|+.|-+.-|+| .++++.+ .|+-+..|+-.++.|++.++--|. |.+... |.
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vi-------------p~~~~r--~~ 246 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVV-------------PVFPVR--NP 246 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCEE-------------EEEEEE--eC
Confidence 46999999999999995554455 4455522 567789999999999997763321 322222 32
Q ss_pred CCcccceEEEeecCCCCCCCCChhhHHHHHHHHhc
Q 009423 186 EKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALAC 220 (535)
Q Consensus 186 ~~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~ 220 (535)
.+..|++.|.+. .|+--..|=+.+.+.+++
T Consensus 247 --~g~~y~l~i~p~---~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 247 --DGSGYTLHIHPP---MTDDPSEDVEADAQRMND 276 (308)
T ss_pred --CCCeEEEEEecc---ccCCCCCCHHHHHHHHHH
Confidence 245689999762 233344455555665554
No 39
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=40.17 E-value=47 Score=29.54 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=29.8
Q ss_pred HHHH-HHcCCCeee--cccCCcccccccccCCeEEEEEee
Q 009423 445 AQIL-RDLGVRTMK--LMTNNPSKYVGLKGYGLAIAGRIP 481 (535)
Q Consensus 445 AQIL-rdLGV~kIr--LLTNNP~K~~aL~g~GIeV~ervp 481 (535)
.+++ +.+|+++|. ++.+|+.-++..+.+|.++++.++
T Consensus 102 ~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 102 IEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp HHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred HHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 3456 889999987 688899999999999999999877
No 40
>PRK04966 hypothetical protein; Provisional
Probab=36.88 E-value=40 Score=28.67 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHcCcEEEEEeCCC
Q 009423 109 ASISEAIEDIRQGKLVIVVDDED 131 (535)
Q Consensus 109 ~~Ie~Ai~aLr~G~~Vvv~Dde~ 131 (535)
..|++...+|++|+.||++|...
T Consensus 37 ~kv~qv~~qL~~G~~viv~se~~ 59 (72)
T PRK04966 37 QKVADVKRQLQSGEAVLVWSELH 59 (72)
T ss_pred HHHHHHHHHHHcCCEEEEECCCC
Confidence 36899999999999999998543
No 41
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=34.50 E-value=28 Score=36.64 Aligned_cols=38 Identities=18% Similarity=0.467 Sum_probs=29.1
Q ss_pred HHHHHHHcCCCeeecccCCcccccccccCCeEEEEEee
Q 009423 444 GAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIP 481 (535)
Q Consensus 444 gAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV~ervp 481 (535)
..+.|+..||++|||..-+|.=+.++++-||+|.--||
T Consensus 18 vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 18 VVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp HHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-
T ss_pred HHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccC
Confidence 47889999999999999999999999999999999888
No 42
>PRK00304 hypothetical protein; Provisional
Probab=31.47 E-value=78 Score=27.16 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.8
Q ss_pred cHHHHHHHHHcCcEEEEEeCC
Q 009423 110 SISEAIEDIRQGKLVIVVDDE 130 (535)
Q Consensus 110 ~Ie~Ai~aLr~G~~Vvv~Dde 130 (535)
.|++...+|++|+.||++|..
T Consensus 37 kv~qv~~qL~~G~~vIvfse~ 57 (75)
T PRK00304 37 RVLRVRQALTKGQAVILFDPE 57 (75)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 689999999999999999854
No 43
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=30.60 E-value=51 Score=27.19 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=17.2
Q ss_pred CcccHHHHHHHHHcCcEEEEEeCC
Q 009423 107 GFASISEAIEDIRQGKLVIVVDDE 130 (535)
Q Consensus 107 ~~~~Ie~Ai~aLr~G~~Vvv~Dde 130 (535)
.|+.++++.++|++|++|+| |=+
T Consensus 8 ~~~D~~~i~~~l~~g~~Viv-nl~ 30 (73)
T PF04472_consen 8 SFEDAREIVDALREGKIVIV-NLE 30 (73)
T ss_dssp SGGGHHHHHHHHHTT--EEE-E-T
T ss_pred CHHHHHHHHHHHHcCCEEEE-ECC
Confidence 68899999999999998875 543
No 44
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=29.70 E-value=29 Score=27.21 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=13.6
Q ss_pred hHHHHHHHhcCCceecHHHH
Q 009423 283 PKLRQFAQTENLKIISIADL 302 (535)
Q Consensus 283 ~el~~fA~~h~L~ivsi~DL 302 (535)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46789999999999999884
No 45
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.64 E-value=1.3e+02 Score=30.65 Aligned_cols=92 Identities=21% Similarity=0.138 Sum_probs=52.9
Q ss_pred HHHHHHHHHHH-hCCeEEEEEeCCCCCCcchHHHhhhhhccc-CCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeee
Q 009423 380 QLALAMKQIEA-AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD-DGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMK 457 (535)
Q Consensus 380 QL~~AL~~I~~-~G~GVlVYLr~qEGRGiGL~~Kl~ay~LQd-~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIr 457 (535)
+|..+.+.+.. ..--+|+|---...=.+|- .++..-..+. .|......- .....-|+.||+++|-
T Consensus 58 ~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~-~~~~~~i~~~~~g~p~tt~~------------~A~~~AL~alg~~RIa 124 (239)
T TIGR02990 58 RLTEAAALILPDEELDVVAYSCTSASVVIGD-DEVTRAINAAKPGTPVVTPS------------SAAVDGLAALGVRRIS 124 (239)
T ss_pred hHHHHHHHhcCCCCCCEEEEccchhheecCH-HHHHHHHHhcCCCCCeeCHH------------HHHHHHHHHcCCCEEE
Confidence 45555555533 6788999975333333442 2222111111 122221111 1234569999999999
Q ss_pred cccCCcccc-----cccccCCeEEEEEeecCC
Q 009423 458 LMTNNPSKY-----VGLKGYGLAIAGRIPLLT 484 (535)
Q Consensus 458 LLTNNP~K~-----~aL~g~GIeV~ervpl~~ 484 (535)
|+|-.+.-+ ..|+..|++|+...-+..
T Consensus 125 lvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 125 LLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred EECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 999877654 447899999998766544
No 46
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.08 E-value=56 Score=33.35 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=42.6
Q ss_pred HHHHHHHcCCCeeecccCCc-----ccccccccCCeEEEEEeecCCCCCh------hhHHHHHHHHHh
Q 009423 444 GAQILRDLGVRTMKLMTNNP-----SKYVGLKGYGLAIAGRIPLLTPITM------ENKRYLETKRAK 500 (535)
Q Consensus 444 gAQILrdLGV~kIrLLTNNP-----~K~~aL~g~GIeV~ervpl~~~~~~------~n~~YL~tK~~k 500 (535)
..+=|+.||+++|.++|-.- .-...|++.|++|+...-+....|- -..-|=-+|+-.
T Consensus 109 vv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~ 176 (238)
T COG3473 109 VVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVF 176 (238)
T ss_pred HHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhc
Confidence 35569999999999998532 2356689999999999887765553 346677777765
No 47
>PRK08296 hypothetical protein; Provisional
Probab=27.71 E-value=61 Score=37.50 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=53.0
Q ss_pred cCcEEEEEeCCC-CCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecC-----hhhHhhcCCCcccccCCCCCCcccceE
Q 009423 120 QGKLVIVVDDED-RENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK-----GEDLERLELPLMVNHKDNEEKLCTAFT 193 (535)
Q Consensus 120 ~G~~Vvv~Dde~-REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~-----~~~~~rL~Lp~M~~~~~n~~~~~taFt 193 (535)
.|+..||.+.++ .+-+..-|+-+...+|..+..| ....|+|+-.=. .-.|+.+|+|.++..........+...
T Consensus 511 ~G~vrvv~~~~~~~~~~~g~ILV~~~tdP~~~~~~-~~~~GiVte~Gg~~SHaAIvARe~GIPaVvgv~~at~~l~dG~~ 589 (603)
T PRK08296 511 EGPARVIRSADELSEVQEGEILVCPVTSPSWAPIF-AKIKATVTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQR 589 (603)
T ss_pred EEEEEEeCCHHHHHhccCceEEEeCCCCHHHHHHH-HHheEEEEecCCCcchHHHHHHHcCCCEEEcCccHhhhcCCCCE
Confidence 466556655333 1222334555677788888877 668888876422 347999999988765322334457789
Q ss_pred EEeecCCCC
Q 009423 194 VSVDAKYGT 202 (535)
Q Consensus 194 VsVDa~~g~ 202 (535)
|+||..+|+
T Consensus 590 V~vDg~~G~ 598 (603)
T PRK08296 590 LRVDGTKGV 598 (603)
T ss_pred EEEECCCCE
Confidence 999986665
No 48
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=27.52 E-value=20 Score=35.92 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=33.0
Q ss_pred CCCCCcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEc--CCCCHHHHHH
Q 009423 103 RPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAA--SLVTPEAMAF 152 (535)
Q Consensus 103 ~~~~~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AA--e~~Tpe~v~f 152 (535)
.|..+|-++++|++..++|-.|.=+=+.+...|.|+|+|+ +..|-|.++-
T Consensus 2 qp~pqwls~eeA~~hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~lAA 53 (203)
T PF09363_consen 2 QPRPQWLSMEEARAHCAAGAGIWDWASTDQGEEPDVVLACAGDVPTLEVLAA 53 (203)
T ss_dssp SEEEE-S-HHHHHHHHHHSEEE-CCC-SSSTTT-SEEEEEESHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHcCCeEEEeccCCCCCCCCEEEEecCchhhHHHHHH
Confidence 4677888999999999999888744333444577888776 5666676654
No 49
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=25.83 E-value=48 Score=27.73 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=41.3
Q ss_pred cccEEEEcCCCCHHHHHHHHHhCCCcEEeecC-----hhhHhhcCCCcccccCCCCCCcccceEEEeecC
Q 009423 135 EGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK-----GEDLERLELPLMVNHKDNEEKLCTAFTVSVDAK 199 (535)
Q Consensus 135 EgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~-----~~~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa~ 199 (535)
+.+.|+-++..+|..+.+......|+|+-.=. .=.|+.||+|..+............-.|.||..
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~~~~~~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGGPTSHAAILARELGIPAIVGVGDATEAIKDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEESTTTHHHHSCTTEEEEEETT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCCccchHHHHHHHcCCCEEEeeccHhhccCCCCEEEEECC
Confidence 45677778888888888555668898876421 346889999988765222233345567888864
No 50
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=25.50 E-value=1.3e+02 Score=27.32 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=38.5
Q ss_pred cchhHHHHHHHHHcCCCccEEEEEEeCCCCCccChhHHHHHHHhcCCceec
Q 009423 248 AGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 298 (535)
Q Consensus 248 ~GhtEAAvDLarLAGl~PaaVicEil~~dG~ma~~~el~~fA~~h~L~ivs 298 (535)
-.|+...+..++..|+...+++....+++-.+ .......+++..++|++.
T Consensus 82 i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 82 INHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLG 131 (134)
T ss_pred HhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEE
Confidence 45888999999999999999999877653222 224577888888988764
No 51
>PLN02398 hydroxyacylglutathione hydrolase
Probab=23.65 E-value=7.2e+02 Score=26.63 Aligned_cols=140 Identities=15% Similarity=0.084 Sum_probs=75.1
Q ss_pred ccccchhHHHHHHHHHcCCCccEEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhhhccccccCCC
Q 009423 245 LKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTM 324 (535)
Q Consensus 245 l~R~GhtEAAvDLarLAGl~PaaVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~r~~~~~lpT~ 324 (535)
+.-+|..+.-++..+-.|+....|++.=...|. .--+.+|.++++.+++.-..-..+....+..+ .... ...
T Consensus 102 vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH----~GG~~~L~~~~ga~V~g~~~~~~~i~~~d~~v---~dGd-~i~ 173 (329)
T PLN02398 102 VVDPSEAVPVIDALSRKNRNLTYILNTHHHYDH----TGGNLELKARYGAKVIGSAVDKDRIPGIDIVL---KDGD-KWM 173 (329)
T ss_pred EEcCCCHHHHHHHHHhcCCCceEEEECCCCchh----hCCHHHHHHhcCCEEEEehHHhhhccCCcEEe---CCCC-EEE
Confidence 334555555666666678887777765433332 22344567778888876443111100000001 1110 111
Q ss_pred cccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCC-----ChHHHHHHHHHHHHhCCeEEEEE
Q 009423 325 WGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD-----CGNQLALAMKQIEAAGRGVLVYL 399 (535)
Q Consensus 325 ~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCD-----Cg~QL~~AL~~I~~~G~GVlVYL 399 (535)
+|.+++.++...-....|+++...+ .. ..++||.+-+..|. ...|+..+|+.|.+-..-.+||-
T Consensus 174 lgg~~l~vi~tPGHT~GhI~~~~~~----~~-------vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~Vyp 242 (329)
T PLN02398 174 FAGHEVLVMETPGHTRGHISFYFPG----SG-------AIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYC 242 (329)
T ss_pred ECCeEEEEEeCCCcCCCCEEEEECC----CC-------EEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC
Confidence 3444555555443445677776432 11 24678876665442 23588899999988776677775
Q ss_pred eCCCC
Q 009423 400 RGHEG 404 (535)
Q Consensus 400 r~qEG 404 (535)
+||.
T Consensus 243 -GHgy 246 (329)
T PLN02398 243 -GHEY 246 (329)
T ss_pred -CCCC
Confidence 5764
No 52
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.06 E-value=40 Score=29.27 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCeeecccCCcccccccccCCeEE
Q 009423 443 IGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAI 476 (535)
Q Consensus 443 igAQILrdLGV~kIrLLTNNP~K~~aL~g~GIeV 476 (535)
.++|++|.+| .+|...+.++.|.+.++.+|...
T Consensus 5 ~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~ 37 (130)
T PF00107_consen 5 MAIQLAKAMG-AKVIATDRSEEKLELAKELGADH 37 (130)
T ss_dssp HHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE
T ss_pred HHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc
Confidence 3679999999 89999999999999999999543
No 53
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=22.88 E-value=1.3e+02 Score=30.50 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=35.9
Q ss_pred ccccchh-HHHHHHHHHcCCCccEEEEEEeCCCCCccChhHHHHHHHhcCCceecH
Q 009423 245 LKRAGHT-EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 299 (535)
Q Consensus 245 l~R~Ght-EAAvDLarLAGl~PaaVicEil~~dG~ma~~~el~~fA~~h~L~ivsi 299 (535)
..+.|.| .++++|++-+|-.+++++|-+-..++ ..++..+++++|+.++
T Consensus 185 vi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~------~~~~l~~~~~vpv~sl 234 (238)
T PRK08558 185 IIRSGETQRALLDLARQAGADVVGVFFLIAVGEV------GIDRAREETDAPVDAL 234 (238)
T ss_pred ccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch------HHHHHhHhcCCCEEEE
Confidence 3456777 78899999999999999886544322 2445556789998875
No 54
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=22.33 E-value=3.4e+02 Score=29.11 Aligned_cols=94 Identities=23% Similarity=0.450 Sum_probs=57.1
Q ss_pred cCcEEEEEeCCCCCCccc-EEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCCCcccceEEEeec
Q 009423 120 QGKLVIVVDDEDRENEGD-LIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDA 198 (535)
Q Consensus 120 ~G~~Vvv~Dde~REnEgd-LV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa 198 (535)
.|+||+|+.-+..-+..+ +-=---...||-....+|- -+.|++++||.+.- ||.
T Consensus 105 ~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRl----------m~~AekF~lPiitf---------------IDT 159 (317)
T COG0825 105 GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRL----------MKLAEKFGLPIITF---------------IDT 159 (317)
T ss_pred CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHH----------HHHHHHhCCCEEEE---------------ecC
Confidence 699999997654332222 2222234567777666662 47788999986543 332
Q ss_pred CCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHH-HHHHHHHcCCCccEEEEEEeCCCC
Q 009423 199 KYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEA-SVDLAVLAGLEPVAVLCEIVDDDG 277 (535)
Q Consensus 199 ~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEA-AvDLarLAGl~PaaVicEil~~dG 277 (535)
. |..-||.|.+ .|..|| |--|.+|++|+ +=+||-++.+.|
T Consensus 160 ~-GAypG~~AEE-------------------------------------rGQ~eAIA~nL~em~~Lk-vPiI~iVIGEGg 200 (317)
T COG0825 160 P-GAYPGIGAEE-------------------------------------RGQSEAIARNLREMARLK-VPIISIVIGEGG 200 (317)
T ss_pred C-CCCCCcchhh-------------------------------------cccHHHHHHHHHHHhCCC-CCEEEEEecCCC
Confidence 2 4444444444 456666 67778888875 667777777754
No 55
>PLN02880 tyrosine decarboxylase
Probab=22.11 E-value=1.5e+02 Score=33.15 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=41.9
Q ss_pred cccchhHHHHHHHHHcCCCccEEEEEEeC-CCCCccChhHHHHHHHhcCCce
Q 009423 246 KRAGHTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKI 296 (535)
Q Consensus 246 ~R~GhtEAAvDLarLAGl~PaaVicEil~-~dG~ma~~~el~~fA~~h~L~i 296 (535)
.+...-|.+++-.+.+|+.|.+|++..=. .-|...+.+++.++|++||+.+
T Consensus 221 md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 221 LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 34556678888778899999999998643 3588999999999999999876
No 56
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=22.00 E-value=1.5e+02 Score=30.75 Aligned_cols=120 Identities=26% Similarity=0.382 Sum_probs=65.3
Q ss_pred HHHHHHHH---HcCcE-EEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCCC
Q 009423 111 ISEAIEDI---RQGKL-VIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (535)
Q Consensus 111 Ie~Ai~aL---r~G~~-Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~ 186 (535)
++.|++++ ..|.. =|++ ||++|.=+.-. +.|+.++.|.+-. .+..+.+++|.=+.
T Consensus 28 ie~A~~ea~~l~~~GvDgiiv-----eN~~D~Py~~~-~~~etvaaM~~i~---------~~v~~~~~~p~GVn------ 86 (254)
T PF03437_consen 28 IERAVREAEALEEGGVDGIIV-----ENMGDVPYPKR-VGPETVAAMARIA---------REVRREVSVPVGVN------ 86 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEE-----ecCCCCCccCC-CCHHHHHHHHHHH---------HHHHHhCCCCEEee------
Confidence 46666544 34442 3343 57889888766 9999999999843 33344444442111
Q ss_pred CcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccC-CCCccceeeccCCcccccchhHHHHHHHHHcCCCc
Q 009423 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNR-PGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265 (535)
Q Consensus 187 ~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~r-PGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~P 265 (535)
.++-|.. ...++|. +.-.||.| ..+++-..+. .|+++ +.....+.+-+..|..
T Consensus 87 ------vL~nd~~--------------aalaiA~--A~ga~FIRv~~~~g~~~~d-~G~~~--~~a~e~~r~R~~l~a~- 140 (254)
T PF03437_consen 87 ------VLRNDPK--------------AALAIAA--ATGADFIRVNVFVGAYVTD-EGIIE--GCAGELLRYRKRLGAD- 140 (254)
T ss_pred ------eecCCCH--------------HHHHHHH--HhCCCEEEecCEEceeccc-Ccccc--ccHHHHHHHHHHcCCC-
Confidence 1121211 1112222 33469999 8887765544 35544 2223334444555667
Q ss_pred cEEEEEEeCCCC
Q 009423 266 VAVLCEIVDDDG 277 (535)
Q Consensus 266 aaVicEil~~dG 277 (535)
+.+++.+-...+
T Consensus 141 v~ilaDV~~kh~ 152 (254)
T PF03437_consen 141 VKILADVHVKHS 152 (254)
T ss_pred eEEEeeechhhc
Confidence 888888765433
No 57
>PRK06354 pyruvate kinase; Provisional
Probab=21.95 E-value=1.7e+02 Score=33.83 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=53.3
Q ss_pred cCcEEEEEeCCCCC-CcccEEEEcCCCCHHHHHHHHHhCCCcEEeecC-----hhhHhhcCCCcccccCCCCCCcccceE
Q 009423 120 QGKLVIVVDDEDRE-NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK-----GEDLERLELPLMVNHKDNEEKLCTAFT 193 (535)
Q Consensus 120 ~G~~Vvv~Dde~RE-nEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~-----~~~~~rL~Lp~M~~~~~n~~~~~taFt 193 (535)
.|...++-+.++-+ -+..-|+-++..+|+.+..| +...|+|+-.=. .-.|+.||+|..+....-.+.......
T Consensus 494 ~G~v~~~~~~~~~~~~~~~~ILV~~~~~P~~~~~~-~~~~GiVt~~Gg~tSH~AIvAR~lgIPaVvg~~~~~~~l~~G~~ 572 (590)
T PRK06354 494 SGKARVAKTAAEVAKVNEGDILVTPSTDADMIPAI-EKAAAIITEEGGLTSHAAVVGLRLGIPVIVGVKNATSLIKDGQI 572 (590)
T ss_pred cceEEEeCChHhhccCCCCeEEEeCCCCHHHHHhH-HhcEEEEEecCCCcchHHHHHHhcCCCEEEeccchhhccCCCCE
Confidence 56555554433311 12345666777999887775 889999887522 348999999988764222333456678
Q ss_pred EEeecCCCC
Q 009423 194 VSVDAKYGT 202 (535)
Q Consensus 194 VsVDa~~g~ 202 (535)
|+||...|.
T Consensus 573 v~vDg~~G~ 581 (590)
T PRK06354 573 ITVDAARGV 581 (590)
T ss_pred EEEECCCCE
Confidence 999986554
No 58
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=21.91 E-value=7.2e+02 Score=26.24 Aligned_cols=40 Identities=30% Similarity=0.296 Sum_probs=27.1
Q ss_pred eEEEeecCCCCCCCCChhhHHHHHHHHhcCCC---CCCCccCC---CCc
Q 009423 192 FTVSVDAKYGTTTGVSANDRAKTVLALACRDS---KPEDFNRP---GHI 234 (535)
Q Consensus 192 FtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s---~p~Df~rP---GHV 234 (535)
-=|.||. .++-| +...=++|++.+..--. .-+|-+.| ||.
T Consensus 79 iPviaD~--d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~ 124 (292)
T PRK11320 79 LPLLVDI--DTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHR 124 (292)
T ss_pred CCEEEEC--CCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCC
Confidence 3478887 45556 77777889999997654 35676545 554
No 59
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=21.56 E-value=1.9e+02 Score=29.48 Aligned_cols=49 Identities=27% Similarity=0.486 Sum_probs=36.7
Q ss_pred cCcEEEEEeCCC-------------CCCc-ccEEEEcCCCCHHHHHHHHHhCCCcEEeecChh
Q 009423 120 QGKLVIVVDDED-------------RENE-GDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGE 168 (535)
Q Consensus 120 ~G~~Vvv~Dde~-------------REnE-gdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~ 168 (535)
+|+-|||+||-- |-++ .++|+|.--+.++...-|...+-+++|+.++..
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~ 185 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAP 185 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCcc
Confidence 456789999732 1112 367888888888888889999999999998754
Done!