BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009424
         (535 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
 pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
          Length = 201

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 428 LAEGHIRE-RRILE---ALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAF 483
           L+ G I E ++ LE    L   KG F+AE  K ++P P  V  +F        +G+KEAF
Sbjct: 94  LSNGSINEVKQHLERNGLLRYFKGIFSAESVKEYKPSP-KVYKYFL-----DSIGAKEAF 147

Query: 484 VA 485
           + 
Sbjct: 148 LV 149


>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
           Rickettsia Typhi
          Length = 711

 Score = 29.6 bits (65), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 27/146 (18%)

Query: 218 MTLYMKIKEYDEVESMVSEMKEK--GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275
           M  Y +IK+  E+E++  + ++   G+    Y YN W+     QG   +   + +    D
Sbjct: 53  MQEYKQIKK--EIETIFYDQRKTPYGVIRKGYVYNFWMDDKNPQGLWRRT--LVDNYSKD 108

Query: 276 KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR-ITGRDRVPYHYLLSL-YGSVGKK 333
           K   PNW        +  K+G         ++V  R ++   + P  YL+S+ +G  GK 
Sbjct: 109 K---PNWEVLIDFDKLSKKIG---------KKVAYRGVSNCFQNPNRYLISMSFG--GKD 154

Query: 334 EEVYRVWNL-----YRSVFPGVTNLG 354
           E  +R W+L      ++ F  +TN G
Sbjct: 155 EMFFREWDLEKKDFVKNGFEPITNSG 180


>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
           Tokodaii
 pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
           Tokodaii
          Length = 206

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 428 LAEGHIRE-RRILE---ALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAF 483
           L+ G I E ++ LE    L   KG F+AE  K ++P P  V  +F        +G+KEAF
Sbjct: 99  LSNGSINEVKQHLERNGLLRYFKGIFSAESVKEYKPSP-KVYKYFL-----DSIGAKEAF 152

Query: 484 VA 485
           + 
Sbjct: 153 LV 154


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,464,912
Number of Sequences: 62578
Number of extensions: 621744
Number of successful extensions: 1477
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 9
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)