BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009424
(535 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/534 (61%), Positives = 420/534 (78%), Gaps = 15/534 (2%)
Query: 1 MILQPSLHNHH-KICLSQSRTQPLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIHS 59
M+LQ ++ N + + S S ++ L C+ P ++ +K I CS+SQ++
Sbjct: 1 MLLQAAVQNRNVPLASSASYSRLLRCRSPVV--------SVAALSKKTAAIVCSISQVYG 52
Query: 60 YGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKF 119
YGTVD+ERRP+++WNAI++K+SLM+ P+LG+ASVLN WEK GR LTKWELCRVVKELRK+
Sbjct: 53 YGTVDYERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKY 112
Query: 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVY 179
+R ALEVYDWMNNRGERFRLSASDAAIQLDLI KV G+ AE+FFL LP+ KDRRVY
Sbjct: 113 KRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVY 172
Query: 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239
G+LLNAYVRA+ R AE L++ MRDKGYA+H LP+NVMMTLYM ++EYD+V++MV EMK+
Sbjct: 173 GSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQ 232
Query: 240 KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299
K IRLD+YSYNIWLSSCGS GS EKME V++ MK D ++ PNWTTFSTMATMYIKMG+ E
Sbjct: 233 KDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETE 292
Query: 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359
KAE++LR+VE+RITGR+R+PYHYLLSLYGS+G K+E+YRVW++Y+SV P + NLGYHA++
Sbjct: 293 KAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALV 352
Query: 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
SSL R+GDIEG EK++EEWL VKSSYDPRI NL+M+ YVK + AE F+ ++E GGK
Sbjct: 353 SSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGK 412
Query: 420 PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479
P+S++WE LA GH R+R I EAL+CL+ AF+AEG+ +WRPK + + FFK CEEESD+ S
Sbjct: 413 PSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTS 472
Query: 480 KEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDEDSD-EDSEMLLSQLQ 532
KEA + LLRQ G ++K Y++LI V EN N+ + D +++ LL+QLQ
Sbjct: 473 KEAVLELLRQSGDLEDKSYLALID-----VDENRTVNNSEIDAHETDALLTQLQ 521
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 268 bits (686), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 223/398 (56%), Gaps = 6/398 (1%)
Query: 94 LNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLI 153
LN + KG + + KWE+ +K+LR Y AL++ + M RG + SD AI LDL+
Sbjct: 43 LNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERG--MNKTVSDQAIHLDLV 100
Query: 154 AKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLP 213
AK + + E++F+ LP+T K YG+LLN Y + + AE L++KM++ S+
Sbjct: 101 AKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMS 160
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273
YN +MTLY K E ++V +M+ E+K + + D Y+YN+W+ + + +E V E M
Sbjct: 161 YNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMN 220
Query: 274 VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333
D V P+WTT+S MA++Y+ G +KAE++L+ +E + T RD Y +L++LYG +GK
Sbjct: 221 RDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKL 280
Query: 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM 393
EVYR+W R P +N+ Y MI L ++ D+ G E +F+EW + S+YD RI N++
Sbjct: 281 TEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVL 340
Query: 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA--- 450
+ Y +EG KA GGK N+ +WE + +++ + AL C+ A +
Sbjct: 341 IGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGK 400
Query: 451 AEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488
+G K W P P V E++ D+ E + +L+
Sbjct: 401 GDGGK-WLPSPETVRALMSYFEQKKDVNGAENLLEILK 437
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/458 (32%), Positives = 263/458 (57%), Gaps = 26/458 (5%)
Query: 93 VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152
+ W++ G S+ K+EL R+V+ELRK +RYKHALE+ +WM + E +L A D A+ LDL
Sbjct: 80 TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQ-EDIKLQAGDYAVHLDL 138
Query: 153 IAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSL 212
I+K+ G+ SAE FF +PD ++ +LL++YV+ ++ AE L +KM + G+ L
Sbjct: 139 ISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCL 198
Query: 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL--DVYSYNIWLSSCGSQGSTEKMEGVFE 270
PYN M+++Y+ ++++V ++ E+K IR D+ +YN+WL++ S E E V+
Sbjct: 199 PYNHMLSMYISRGQFEKVPVLIKELK---IRTSPDIVTYNLWLTAFASGNDVEGAEKVYL 255
Query: 271 LMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330
K +K +NP+W T+S + +Y K VEKA +L+ +E ++ ++RV Y L+SL+ ++
Sbjct: 256 KAKEEK-LNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANL 314
Query: 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
G K+ V W +S F + + Y +MIS++ ++G+ E + +++EW SV + D RI
Sbjct: 315 GDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIP 374
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA 450
NL+++ Y+ E F+ I+E+G P+ ++WE L +++ + + + L C A
Sbjct: 375 NLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAI- 433
Query: 451 AEGAKSWRPKPVNVINFFKAC---EEESDMGSKEAFVALLRQPGYRKEKDYMSLIG---- 503
+ K W VNV AC EE+ ++ E + LL++ GY + Y SL+
Sbjct: 434 -DSVKKW---TVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAK 489
Query: 504 ------LTDEAVAENNKKNDEDSDEDSEMLLSQLQFAE 535
+ +E +A++N + DE++ E L SQ++ E
Sbjct: 490 AGEMALIVEERMAKDNVELDEETKELIR-LTSQMRVTE 526
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 146/425 (34%), Positives = 242/425 (56%), Gaps = 4/425 (0%)
Query: 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEV 128
P+ ++ + R+++ +P VL+ W G + EL ++K LRKF R+ HAL++
Sbjct: 33 PLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQI 92
Query: 129 YDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVR 188
DWM+ +S D AI+LDLIAKV G+ AE FF ++P ++ +YGALLN Y
Sbjct: 93 SDWMSEH-RVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYAS 151
Query: 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS 248
++ AE + +M++ G+ LPYNVM+ LY++ +Y VE ++ EM+++ ++ D+++
Sbjct: 152 KKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFT 211
Query: 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308
N L + E ME + D+ ++ +W T++ A YIK G EKA E LR+
Sbjct: 212 VNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKS 271
Query: 309 ESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD 367
E + + R Y L+S YG+ GKKEEVYR+W+LY+ + G N GY ++IS+L ++ D
Sbjct: 272 EQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKEL-DGFYNTGYISVISALLKMDD 330
Query: 368 IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWET 427
IE +EKI EEW + S +D RI +L+++ Y K+G +KAE N ++++ ++++WE
Sbjct: 331 IEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWER 390
Query: 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487
LA G+ ++ +A+ K A WRP V +++ E + DM + LL
Sbjct: 391 LALGYKMAGKMEKAVEKWKRAIEV-SKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLL 449
Query: 488 RQPGY 492
+ G+
Sbjct: 450 SERGH 454
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 252/467 (53%), Gaps = 9/467 (1%)
Query: 71 IKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYD 130
+K ++ K+S + +P+ L +W + G+ ++ EL R+V +LR+ +R+ HALEV
Sbjct: 22 VKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSK 81
Query: 131 WMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR 190
WMN G S ++ A+ LDLI +V+G +AE++F +L + K+ + YGALLN YVR +
Sbjct: 82 WMNETGVCV-FSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQ 140
Query: 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN 250
+ L +KM++ G+ SL YN +M LY I ++++V ++ EMKE+ + D YSY
Sbjct: 141 NVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYR 200
Query: 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310
I +++ G+ E++ G M+ + + +W T++ A YI G ++A E L+ E+
Sbjct: 201 ICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSEN 260
Query: 311 RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370
R+ +D Y++L++LY +GKK EV R+W+L + V N Y ++ SL +I +
Sbjct: 261 RLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVE 320
Query: 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430
E++ EW S + YD R+ N ++ Y+ + +KAEA + G SWE +A
Sbjct: 321 AEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVAT 380
Query: 431 GHIRERRILEALSCLKGAFAAE-GAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489
+ + + A C+K A E G++ WRP V + +E + E+FVA LR
Sbjct: 381 AYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRN 440
Query: 490 PGYRKEKDYMSLI-------GLTDEAVAENNKKNDEDSDEDSEMLLS 529
++ Y +L+ G + + + K + + DE++ ++LS
Sbjct: 441 CIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVILS 487
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 260/467 (55%), Gaps = 10/467 (2%)
Query: 72 KWNAIFRKLSLMDNPQLGSAS-VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYD 130
K +I++KLS + G LN + G + K +L R K+LRKFR+ + ALE+++
Sbjct: 37 KHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFE 96
Query: 131 WMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR 190
WM + F + SD AI+L+LIAK G+ +AE +F SL D++K++ YG+LLN Y +
Sbjct: 97 WMERKEIAF--TGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEK 154
Query: 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN 250
A+ + M D + +SLP+N +M +YM + + ++V ++V MKEK I +Y+
Sbjct: 155 EEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYS 214
Query: 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310
+W+ SCGS + +E V + MK + +W TF+ +A +YIK+G KAEE+L+ +E+
Sbjct: 215 MWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLEN 274
Query: 311 RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370
+ R YH+L++LY + EVYRVW+L + +P V N Y M+ +L+++ DI+G
Sbjct: 275 NMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDG 334
Query: 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430
++K+F EW S +YD R+AN+ +S Y+K+ +++AEA FN +++ S + + L
Sbjct: 335 VKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMM 394
Query: 431 GHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP 490
++ + AL + A + K+W + +FF EE D+ E F L +
Sbjct: 395 HLLKNDQADLALKHFEAAVLDQD-KNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKW 453
Query: 491 GYRKEKDYMSLIGL---TDEAVAENNKKNDEDS---DEDSEMLLSQL 531
+ Y L+ +A + K+ +E DE+ E LLS++
Sbjct: 454 SPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKI 500
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 231/415 (55%), Gaps = 5/415 (1%)
Query: 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR 135
+++KLS++ A LN + G ++ K +L R K LRKFRR +HA E++DWM R
Sbjct: 73 LYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKR 132
Query: 136 GERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRR-VYGALLNAYVRARMRGN 194
+ S SD AI LDLI K G+ +AE++F +L + K+ + YGAL+N Y
Sbjct: 133 --KMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEK 190
Query: 195 AELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254
A+ + M + + +SLP+N MM++YM++ + ++V +V MK++GI +Y+IW+
Sbjct: 191 AKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQ 250
Query: 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITG 314
SCGS + +E + + M D W TFS +A +Y K G EKA+ +L+ +E ++
Sbjct: 251 SCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNP 310
Query: 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI 374
+R +H+L+SLY + K EVYRVW + P V NL Y M+ +++++GD++G++KI
Sbjct: 311 NNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKI 370
Query: 375 FEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434
F EW S +YD R+AN+ ++ Y+K +++AE + +++ P S + + L +
Sbjct: 371 FTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLE 430
Query: 435 ERRILEALSCLKGAF--AAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487
+ A+ L+ A +AE W V FF E+ D+ E F +L
Sbjct: 431 NDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKIL 485
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 233/437 (53%), Gaps = 9/437 (2%)
Query: 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR 135
I RK + P+ S+L + G +++ EL + K L + RY AL++ +WM N+
Sbjct: 44 ILRK----NGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQ 99
Query: 136 GERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV----YGALLNAYVRARM 191
+ S D A++LDLI K HG+ E++F L + RV Y LL AYV+ +M
Sbjct: 100 KD-IEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKM 158
Query: 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNI 251
AE L++K+ G+ V P+N MM LY +Y++V +VS MK I +V SYN+
Sbjct: 159 VKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNL 218
Query: 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR 311
W+++C +E V++ M DK+V W++ T+A +YIK G EKA L E
Sbjct: 219 WMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKM 278
Query: 312 ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGM 371
+ +R+ Y +L++LY S+G KE V R+W + +SV ++ + Y ++SSL + GD+E
Sbjct: 279 LNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEA 338
Query: 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431
E++F EW + +YD R++N+++ YV+ G KAE+ ++E GG PN +WE L EG
Sbjct: 339 ERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEG 398
Query: 432 HIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPG 491
++ + +A+ + F WRP V+ + E+E + A+V L + G
Sbjct: 399 WVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLG 458
Query: 492 YRKEKDYMSLIGLTDEA 508
Y L+ + + A
Sbjct: 459 LASLPLYRLLLRMHEHA 475
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 167/301 (55%), Gaps = 3/301 (0%)
Query: 86 PQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASD 145
P+ + +VL W G +T EL + KELR+ RRYKHALEV +WM E ++S +D
Sbjct: 67 PKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQH-EESKISDAD 125
Query: 146 AAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKM-RD 204
A ++DLI+KV G+ +AE +F L K Y +LL+AY ++ AE L ++
Sbjct: 126 YASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIES 185
Query: 205 KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEK 264
++ YN MMTLYM + + ++V ++ +K+K + D+++YN+WLSSC + + ++
Sbjct: 186 DSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDE 245
Query: 265 MEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL-RRVESRITGRDRVPYHYL 323
+ + E M+ D + N W + + ++YI +V AE +L E I+ R+ + Y +L
Sbjct: 246 LRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFL 305
Query: 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383
+ L+ +G K + ++W R+ +++ Y ++SS +G + E+I +W K+
Sbjct: 306 MILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKT 365
Query: 384 S 384
+
Sbjct: 366 T 366
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 180/366 (49%), Gaps = 16/366 (4%)
Query: 49 VIKCSMSQIHSYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWE 108
VI SMS + +G+ P +A+ R N Q+ VL W + G +
Sbjct: 24 VITVSMSWLKIHGSC-----PHRITDALHR------NAQI--IPVLEQWRQQGNQVNPSH 70
Query: 109 LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168
+ ++K+LR + AL+V +WM+ + + L D A +L LI V G+ AE FF S
Sbjct: 71 VRVIIKKLRDSDQSLQALQVSEWMS-KEKICNLIPEDFAARLHLIENVVGLEEAEKFFES 129
Query: 169 LPDTLKDRRVYGALLNAYVRA-RMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227
+P + VY +LLN+Y R+ + AE KMRD G + +PYN MM+LY +K
Sbjct: 130 IPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNR 189
Query: 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFST 287
++VE ++ EMK+ + D + N L + +ME + + W T
Sbjct: 190 EKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLEWHTTLD 249
Query: 288 MATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV 346
MA Y++ KA + LR E + + + Y +L+ LYG G +EEV RVW LY+S
Sbjct: 250 MAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSK 309
Query: 347 FPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406
N GY +I SL ++ DI G E+I++ W S+ +D RI ++ S Y G +KA
Sbjct: 310 IGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKA 369
Query: 407 EAFFNS 412
E NS
Sbjct: 370 EKLMNS 375
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 98 EKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVH 157
E+ G + +L ++K LR +++ AL+V +WM + + L D A +L L V
Sbjct: 392 EQWGDQMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEK-QVCNLYLEDYAARLYLTENVL 450
Query: 158 GVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVM 217
G+ AE +F ++P+ +KD VY ALL++Y ++ DK
Sbjct: 451 GLEEAEKYFENIPENMKDYSVYVALLSSYAKS--------------DKNLG--------- 487
Query: 218 MTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKA 277
+ V+ ++ EM+E + D+ + N L ++ + ME +
Sbjct: 488 ----------NMVDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMFMRRWGTEDG 537
Query: 278 VNPNWTTFSTMATMYIKMGQVEKA 301
+ T MA Y+K G +K+
Sbjct: 538 IKLERGTMIAMAKAYVKAGLTKKS 561
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 187/377 (49%), Gaps = 8/377 (2%)
Query: 72 KWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDW 131
K + +F+ +++ P L S L+ W + G +T+ E+ + + +LR+ R Y AL++ +W
Sbjct: 128 KQSELFK--TIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEW 185
Query: 132 MNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARM 191
+ ++ ++ D A +LDL K+ G+ E +P + K +Y LL V A
Sbjct: 186 LEA-NKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGN 244
Query: 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNI 251
+EL+ +KM+D G+ + + M+ L+ +I + ++ ++ M+++ I+ + +Y I
Sbjct: 245 VKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRI-DRKKIADVLLLMEKENIKPSLLTYKI 303
Query: 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR 311
+ G+ ME + E MK D+ V ++ T + A Y G +KAE+ L+ +E
Sbjct: 304 LIDVKGATNDISGMEQILETMK-DEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGE 362
Query: 312 ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGM 371
+R + LLS+Y S+G+++EV R+W + S +L A I + ++ ++
Sbjct: 363 SLEANRRAFKDLLSIYASLGREDEVKRIWKICESKPYFEESL---AAIQAFGKLNKVQEA 419
Query: 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431
E IFE+ + + ++++ YV K + + E G + +T+W+ L +
Sbjct: 420 EAIFEKIVKMDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKL 479
Query: 432 HIRERRILEALSCLKGA 448
++ + +A S L A
Sbjct: 480 YVEAGEVEKADSLLDKA 496
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 185/410 (45%), Gaps = 12/410 (2%)
Query: 91 ASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQL 150
S L W G + ++ + LRK R K ALE+ +W+ R +RL + + L
Sbjct: 82 GSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWII-RERPYRLGELEYSYLL 140
Query: 151 DLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH 210
+ K+HGV+ E F +P ++ +Y L+ A + + A + KMR+ GY
Sbjct: 141 EFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYRTS 200
Query: 211 SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFE 270
L YN ++ + ++ MK V +Y+I + ++ + + + F+
Sbjct: 201 HLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKAFD 260
Query: 271 LMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330
MK V PN ++ +A + AE +E ITG + L+ LYG +
Sbjct: 261 GMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDILMILYGRL 319
Query: 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
GK++E+ R WN+ R F V + Y + AR+G+++ E+++ E +VK +
Sbjct: 320 GKEKELARTWNVIRG-FHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKETEQF 378
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA 450
N ++S Y K+G +KA F + G KPNS ++ LA G + + + EAL ++
Sbjct: 379 NSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNIEMGLN 438
Query: 451 AEGAKS------WRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494
+ +KS W +++I F E+ D+ + E ++ Y +
Sbjct: 439 LKTSKSIGSSTPWLETTLSIIECFA---EKGDVENSEKLFEEVKNAKYNR 485
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 35/222 (15%)
Query: 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKE-KGIRLDVYSYNIWLSSCGSQGSTEKMEG 267
V S Y + + ++ D E + EMK KG++ + +N LS G EK G
Sbjct: 338 VRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLK-ETEQFNSLLSVYCKDGLIEKAIG 396
Query: 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327
VF M PN T+ +A + + + +E+L+ +E + L
Sbjct: 397 VFREM-TGNGFKPNSITYRHLA---LGCAKAKLMKEALKNIEMGLN----------LKTS 442
Query: 328 GSVGKKEEVYRVWNLYRSVFPGV-TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386
S+G S P + T L ++I A GD+E EK+FEE + K +
Sbjct: 443 KSIG-------------SSTPWLETTL---SIIECFAEKGDVENSEKLFEEVKNAKYNRY 486
Query: 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428
+ N + YVK +D F ++ G +P++ S+ L
Sbjct: 487 AFVYNALFKAYVKAKVYD--PNLFKRMVLGGARPDAESYSLL 526
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/412 (22%), Positives = 191/412 (46%), Gaps = 21/412 (5%)
Query: 88 LGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147
L S L+ W + G+ + E + +LRK R + AL++ +W++ ++F + D A
Sbjct: 140 LSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDE-NKQFEMEERDYA 198
Query: 148 IQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGY 207
+LDLI+KV G E + ++P++ + VY LL +V AE + +KM+D G+
Sbjct: 199 CRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGF 258
Query: 208 AVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267
+ + N M+ LY ++ + ++ ++ ++++ ++ ++ +Y I + + GS ME
Sbjct: 259 PLSTFTCNQMLILYKRV-DKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQ 317
Query: 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327
+ E MK + V + + +A Y G EKAE+ L+ +E +R LLS+Y
Sbjct: 318 IVETMK-SEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVY 376
Query: 328 GSVGKKEEVYRVWNL------YRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV 381
G + +++EV RVW + Y V + G +I ++ E +FE+ L +
Sbjct: 377 GYLQREDEVRRVWKICEENPRYNEVLAAILAFG---------KIDKVKDAEAVFEKVLKM 427
Query: 382 KSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441
+ ++++ YV + + + + G + +W+ + + ++ + +A
Sbjct: 428 SHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKA 487
Query: 442 LSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYR 493
S L A +K +P + + D+ + E ++Q GY+
Sbjct: 488 ESSLSKAIQ---SKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQ 536
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%)
Query: 93 VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152
VL W K G+ L++ E+ + LRK + Y L++++W+ + F + ++ A QLDL
Sbjct: 160 VLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQ-FEFTEANYASQLDL 218
Query: 153 IAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSL 212
+AKVH + AE F +P++ + VY LL V AE + +KM++ +
Sbjct: 219 VAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTSVF 278
Query: 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELM 272
N ++ LY + + ++ ++ M+ + I+ +Y+ ++S G G ME + E +
Sbjct: 279 ACNQLLLLY-SMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETI 337
Query: 273 KVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY--HYLLSLYGSV 330
K ++ + + S +A YI+ G E+A++ ++ +E + G + P+ LL LY +
Sbjct: 338 K-EEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGK--GLQQTPWVCRSLLPLYADI 394
Query: 331 GKKEEVYRV 339
G + V R+
Sbjct: 395 GDSDNVRRL 403
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 46/116 (39%)
Query: 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271
+PY +M +Y + K + +V M GI + +++ + G K E +
Sbjct: 449 MPYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNR 508
Query: 272 MKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327
D + P +TT+ + Y K G V E+ +++ + Y +L Y
Sbjct: 509 ATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAY 564
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 13/206 (6%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D + L Y+RA ++ A+ L+ ++ KG ++ LY I + D V +
Sbjct: 345 DPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIGDSDNVRRL- 403
Query: 235 SEMKEKGIRLD--VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMY 292
S ++ R D + + W + + E + E K+ P F+ M +Y
Sbjct: 404 SRFVDQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKI----FPMMPYFALM-EIY 458
Query: 293 IKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY---GSVGKKEEVYRVWNLYRSVFPG 349
+ + K + ++R+ + +H L+ LY G VGK E + + P
Sbjct: 459 TENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRATKDNKMRPM 518
Query: 350 VTNLGYHAMISSLARIGDIEGMEKIF 375
T Y A++ A+ GD+ EK+F
Sbjct: 519 FTT--YMAILEEYAKRGDVHNTEKVF 542
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 156/341 (45%), Gaps = 13/341 (3%)
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLI--AKVHGVASAEDFFLSL 169
V+ L K +Y+ A EV+ M G LS + L+ K V E F +
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSG----LSPDSTTYRSLLMEACKKGDVVETEKVFSDM 366
Query: 170 P--DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227
D + D + ++++ + R+ A + + +++ G ++ Y +++ Y +
Sbjct: 367 RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMI 426
Query: 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFST 287
++ +EM ++G +DV +YN L + + + +F M ++A+ P+ T +
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEM-TERALFPDSYTLTI 485
Query: 288 MATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRS 345
+ + K+G ++ A E ++++ + D V Y+ LL +G VG + +W + +
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405
+ P T + Y ++++L G + ++++E +S I N M+ Y + GN
Sbjct: 546 ILP--TPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASD 603
Query: 406 AEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446
E+F +I EG P+ S+ TL G +RE + +A +K
Sbjct: 604 GESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVK 644
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 126/268 (47%), Gaps = 5/268 (1%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
V+ L+ YV+AR A +R KG+ V N ++ ++I + + E+
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
G+ ++VY+ NI +++ G EK+ G F +K V P+ T++T+ + Y G
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKV-GTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGY 355
+E+A E + + + Y+ +++ GK E V+ L + P T Y
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTT--Y 343
Query: 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415
+++ + GD+ EK+F + S D + MMS + + GN DKA +FNS+ E
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 416 EGGKPNSTSWETLAEGHIRERRILEALS 443
G P++ + L +G+ R+ I A++
Sbjct: 404 AGLIPDNVIYTILIQGYCRKGMISVAMN 431
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 24/244 (9%)
Query: 280 PNW----TTFSTMATMYIKMGQVEKAEESLRRVESRI-----------------TGRDRV 318
PN+ + S M + ++ G++ A+ L R+ R G +
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDS 166
Query: 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEW 378
+ L+ Y K E + + L RS V+ +A+I SL RIG +E +++E
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 379 LSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438
+ N+M++ K+G +K F + + E+G P+ ++ TL + + +
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLM 286
Query: 439 LEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDY 498
EA L A +G VIN C+ +KE F +LR Y
Sbjct: 287 EEAFE-LMNAMPGKGFSPGVYTYNTVIN--GLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 499 MSLI 502
SL+
Sbjct: 344 RSLL 347
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
+ +++ Y R+ + E ++KM +G+ + YN ++ +++ + + +V +M
Sbjct: 587 ICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKM 646
Query: 238 KEK--GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM 295
+E+ G+ DV++YN L Q ++ E V M +++ VNP+ +T++ M ++
Sbjct: 647 EEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM-IERGVNPDRSTYTCMINGFVSQ 705
Query: 296 GQVEKA----EESLRR 307
+ +A +E L+R
Sbjct: 706 DNLTEAFRIHDEMLQR 721
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 5/225 (2%)
Query: 118 KFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSL--PDTLKD 175
K ++A+E++ M + R RL LD KV + +A++ + + + L
Sbjct: 492 KLGNLQNAMELFQKMKEK--RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPT 549
Query: 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVS 235
Y L+NA A + D+M K + N M+ Y + + ES +
Sbjct: 550 PISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLE 609
Query: 236 EMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKA-VNPNWTTFSTMATMYIK 294
+M +G D SYN + + + K G+ + M+ ++ + P+ T++++ + +
Sbjct: 610 KMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCR 669
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRV 339
Q+++AE LR++ R DR Y +++ + S E +R+
Sbjct: 670 QNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRI 714
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 119/253 (47%), Gaps = 4/253 (1%)
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
YG L+N V+ R +A L+ M ++GY ++ Y+V+++ K + +E S+ +M
Sbjct: 330 YGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMA 389
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
EKG + ++ Y++ + +G + + + M + PN T+S++ + K G
Sbjct: 390 EKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRM-IASGCLPNAYTYSSLMKGFFKTGLC 448
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAM 358
E+A + + ++ R++ Y L+ VG+ +E VW+ ++ + Y ++
Sbjct: 449 EEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSI 508
Query: 359 ISSLARIGDIEGMEKIFEEWLS---VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415
I L IG ++ K++ E L KS D N+++ + + +A NS+++
Sbjct: 509 IKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLD 568
Query: 416 EGGKPNSTSWETL 428
G P+ + T
Sbjct: 569 RGCDPDVITCNTF 581
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 9/327 (2%)
Query: 122 YKHALEVYDWMNNRGERFRLSASDAAIQLDL--IAKVHGVASAEDFFLSLPD--TLKDRR 177
Y LE YD++ N +S + + L + + K+ V A + F +P+ L D
Sbjct: 164 YHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGY 223
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y L++ + A LL+D+M+ +G + + YNV++ K + V +V M
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM 283
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
KG + +YN + +G +K + E M K + PN T+ T+ +K +
Sbjct: 284 FLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCI-PNDVTYGTLINGLVKQRR 342
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY--RSVFPGVTNLGY 355
A L +E R ++ Y L+S GK EE +W + P + + Y
Sbjct: 343 ATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNI--VVY 400
Query: 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415
++ L R G ++I ++ + + +M + K G ++A + + +
Sbjct: 401 SVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDK 460
Query: 416 EGGKPNSTSWETLAEGHIRERRILEAL 442
G N + L +G R+ EA+
Sbjct: 461 TGCSRNKFCYSVLIDGLCGVGRVKEAM 487
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 137/337 (40%), Gaps = 66/337 (19%)
Query: 110 CRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ---------------LDLIA 154
C +V L K + ++ LE+ D M R S S+AA+ L+L+
Sbjct: 301 CTLVYGLCKVQEFEIGLEMMDEMLC----LRFSPSEAAVSSLVEGLRKRGKIEEALNLVK 356
Query: 155 KVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPY 214
+V + + F VY AL+++ + R AELL D+M G + + Y
Sbjct: 357 RVVDFGVSPNLF-----------VYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTY 405
Query: 215 NVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKV 274
++++ ++ + + D S + EM + G++L VY YN ++ G EG M +
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM-I 464
Query: 275 DKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKE 334
+K + P T++++ Y G++ KA R+ +TG+ P Y
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKA----LRLYHEMTGKGIAPSIYT----------- 509
Query: 335 EVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394
+ ++S L R G I K+F E + N+M+
Sbjct: 510 --------------------FTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMI 549
Query: 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431
Y +EG+ KA F + E+G P++ S+ L G
Sbjct: 550 EGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHG 586
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 115/257 (44%), Gaps = 9/257 (3%)
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
Y LL+ + R A + +M +G + + Y V++ +K K+ ++ EM
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
++G++ D Y + + G ++ G+++LM +++ PN T++ + K G V
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLM-INEGCVPNEVTYTAVINGLCKAGFV 733
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLY--GSVGKKEEVYRVWNLYRSVFPGV--TNLG 354
+AE +++ + ++V Y L + G V ++ V L+ ++ G+
Sbjct: 734 NEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAV----ELHNAILKGLLANTAT 789
Query: 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414
Y+ +I R G IE ++ + S D M++ + + KA +NS+
Sbjct: 790 YNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMT 849
Query: 415 EEGGKPNSTSWETLAEG 431
E+G +P+ ++ TL G
Sbjct: 850 EKGIRPDRVAYNTLIHG 866
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 89/417 (21%), Positives = 159/417 (38%), Gaps = 75/417 (17%)
Query: 152 LIAKVHGVASAEDFFLSLP---DTLK-----DRRVYGALLNAYVRARMRGNAELLIDKMR 203
L A +HG+ F L++ D + D +Y ++ + + A+ +I M
Sbjct: 195 LSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHME 254
Query: 204 DKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN------------- 250
G V+ +PYNV++ K ++ E + ++ K ++ DV +Y
Sbjct: 255 ATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFE 314
Query: 251 ---------IWLSSCGSQGSTE----------KMEGVFELMK--VDKAVNPNWTTFSTMA 289
+ L S+ + K+E L+K VD V+PN ++ +
Sbjct: 315 IGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALI 374
Query: 290 TMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVW------NLY 343
K + +AE R+ + V Y L+ ++ GK + L
Sbjct: 375 DSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLK 434
Query: 344 RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANL--MMSWYVKEG 401
SV+P Y+++I+ + GDI E E ++ K +P + +M Y +G
Sbjct: 435 LSVYP------YNSLINGHCKFGDISAAEGFMAEMINKK--LEPTVVTYTSLMGGYCSKG 486
Query: 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP 461
+KA ++ + +G P+ ++ TL G R I +A+ E A+ W KP
Sbjct: 487 KINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFN-----EMAE-WNVKP 540
Query: 462 VNVINFFKACE---EESDMGSKEAFVALLRQPG-------YRKEKDYMSLIGLTDEA 508
N + + E EE DM F+ + + G YR + L G EA
Sbjct: 541 -NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA 596
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%)
Query: 169 LPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYD 228
L L + Y L+ + R A LI +M G + + Y M+ + +
Sbjct: 780 LKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVK 839
Query: 229 EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEK 264
+ + + M EKGIR D +YN + C G K
Sbjct: 840 KAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 146/337 (43%), Gaps = 11/337 (3%)
Query: 111 RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLP 170
R++ + K ++Y + +++ M G L + I L+ + ++ A F +
Sbjct: 86 RLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN--ILLNCFCRCSQLSLALSFLGKMI 143
Query: 171 DTLKDRRV--YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYD 228
+ + +G+LLN + R +A + D+M GY + + YN ++ K K+ D
Sbjct: 144 KLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVD 203
Query: 229 EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM 288
+++ M++ GI DV +YN +S S G + M + + P+ TF+ +
Sbjct: 204 NALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCM-TKREIYPDVFTFNAL 262
Query: 289 ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYL---LSLYGSVGKKEEVYRVWNLYRS 345
+K G+V +AEE + R D V Y L L +Y + + EE++ + + +
Sbjct: 263 IDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFG-FMVSKG 321
Query: 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405
FP V Y +I+ + +E K+F E + +++ Y + G +
Sbjct: 322 CFPDVVT--YSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNV 379
Query: 406 AEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
AE F ++ G PN ++ L G +I +AL
Sbjct: 380 AEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKAL 416
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 120/320 (37%), Gaps = 83/320 (25%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
+Y +++ +++ NA L+++M G + YN +++ + + MVS M
Sbjct: 188 IYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCM 247
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELM------------------------- 272
++ I DV+++N + +C +G + E +E M
Sbjct: 248 TKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRL 307
Query: 273 ---------KVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYL 323
V K P+ T+S + Y K +VE + + R R+ V Y L
Sbjct: 308 DEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTIL 367
Query: 324 LSLYGSVGK---KEEVYRVWNLYRSVFPGV--TNLGYHAMISSLARIGDIE--------- 369
+ Y GK EE++R R VF GV + Y+ ++ L G IE
Sbjct: 368 IQGYCRAGKLNVAEEIFR-----RMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADM 422
Query: 370 -----------------GMEK---IFEEWLSVKSSYD-----PRI---ANLMMSWYVKEG 401
GM K + + W + S + P I +M+ Y K+G
Sbjct: 423 QKNGMDADIVTYNIIIRGMCKAGEVADAW-DIYCSLNCQGLMPDIWTYTTMMLGLY-KKG 480
Query: 402 NFDKAEAFFNSIIEEGGKPN 421
+A+A F + E+G PN
Sbjct: 481 LRREADALFRKMKEDGILPN 500
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 14/203 (6%)
Query: 150 LDLIAKVHGVASAEDFFLSL------PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMR 203
+D K V+ AE+F+ + PD + Y L+ AE + M
Sbjct: 263 IDACVKEGRVSEAEEFYEEMIRRSLDPDIV----TYSLLIYGLCMYSRLDEAEEMFGFMV 318
Query: 204 DKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE 263
KG + Y++++ Y K K+ + + EM ++G+ + +Y I + G
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLN 378
Query: 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYL 323
E +F M V V+PN T++ + G++EKA L ++ D V Y+ +
Sbjct: 379 VAEEIFRRM-VFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNII 437
Query: 324 LSLYGSVGKKEEVYRVWNLYRSV 346
+ + K EV W++Y S+
Sbjct: 438 IR---GMCKAGEVADAWDIYCSL 457
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
+++ Y L+ Y RA AE + +M G + + YNV++ + ++
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKAL 416
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
++++M++ G+ D+ +YNI + G ++ + + + P+ T++TM
Sbjct: 417 VILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNC-QGLMPDIWTYTTMMLG 475
Query: 292 YIKMGQVEKAEESLRRVE 309
K G +A+ R+++
Sbjct: 476 LYKKGLRREADALFRKMK 493
>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910,
chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2
SV=1
Length = 664
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/386 (20%), Positives = 163/386 (42%), Gaps = 45/386 (11%)
Query: 90 SASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ 149
S+ L+ ++ L +L ++++ R++ +++++WM G + +S + I+
Sbjct: 82 SSDFLSSLQRLATVLKVQDLNVILRDFGISGRWQDLIQLFEWMQQHG-KISVSTYSSCIK 140
Query: 150 LDLIAKVHGVASAEDFFLSLPDTLKDRRVY--GALLNAYVRARMRGNAELLIDKMRDKGY 207
V+ A + + S+PD VY ++L+ V+ + L D+M+ G
Sbjct: 141 F---VGAKNVSKALEIYQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGL 197
Query: 208 AVHSLPYNVMMTLYMKIKE-YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKME 266
+ YN ++ +K+K Y + ++ E+ GI++D Y L+ C S G +E+ E
Sbjct: 198 KPDVVTYNTLLAGCIKVKNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAE 257
Query: 267 GVFELMKVD--------------------------------KAVN--PNWTTFSTMATMY 292
+ MKV+ K++ PN +T+ +Y
Sbjct: 258 NFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVY 317
Query: 293 IKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN 352
IK G +++ E L +ES + +PY L+ GK EE +++ + GV +
Sbjct: 318 IKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKG--KGVRS 375
Query: 353 LGY--HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFF 410
GY MIS+L R + +++ + + D + N M+ Y + G +
Sbjct: 376 DGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMM 435
Query: 411 NSIIEEGGKPNSTSWETLAEGHIRER 436
+ E+ P+ ++ L + I+E+
Sbjct: 436 KKMDEQAVSPDYNTFHILIKYFIKEK 461
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 34/198 (17%)
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
LL Y++ + + L+ ++ GYA + +PY ++M K + +E S+ +MK K
Sbjct: 312 TLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGK 371
Query: 241 GIRLDVYSYNIWLSS-CGSQGSTE-------------------------------KMEGV 268
G+R D Y+ +I +S+ C S+ E +ME V
Sbjct: 372 GVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESV 431
Query: 269 FELMKV--DKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSL 326
+MK ++AV+P++ TF + +IK A ++ + S+ + L+
Sbjct: 432 MRMMKKMDEQAVSPDYNTFHILIKYFIKEKLHLLAYQTTLDMHSKGHRLEEELCSSLIYH 491
Query: 327 YGSVGKKEEVYRVWNLYR 344
G + + E + V+N+ R
Sbjct: 492 LGKIRAQAEAFSVYNMLR 509
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 2/208 (0%)
Query: 237 MKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296
+ ++ +++VY N LS G + +F+ MK D + P+ T++T+ IK+
Sbjct: 157 IPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRD-GLKPDVVTYNTLLAGCIKVK 215
Query: 297 Q-VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGY 355
KA E + + D V Y +L++ S G+ EE + Y
Sbjct: 216 NGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHY 275
Query: 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415
++++S + GD + +++ E S+ + + ++ Y+K G FD++ + +
Sbjct: 276 SSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELES 335
Query: 416 EGGKPNSTSWETLAEGHIRERRILEALS 443
G N + L +G + ++ EA S
Sbjct: 336 AGYAENEMPYCMLMDGLSKAGKLEEARS 363
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 5/278 (1%)
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
+ D Y ++L+ Y + A + KMR G + Y+++M K E
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
+ M ++G++ ++ +Y L ++G+ +M G+ +LM V ++P+ FS +
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM-VRNGIHPDHYVFSILICA 380
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEE--VYRVWNLYRSVFPG 349
Y K G+V++A ++ + + V Y ++ + G+ E+ +Y + + PG
Sbjct: 381 YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440
Query: 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAF 409
N+ Y+++I L E E++ E L + N ++ + KEG ++E
Sbjct: 441 --NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 498
Query: 410 FNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKG 447
F ++ G KPN ++ TL G+ ++ EA+ L G
Sbjct: 499 FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 37/299 (12%)
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
YGA++ ++ +A L ++M D+G + ++ YN ++ +++ E ++ EM
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
++GI L+ +N + S +G + E +FELM V V PN T++T+ Y G++
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM-VRIGVKPNVITYNTLINGYCLAGKM 527
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN------------LYRSV 346
++A + L + S + V Y L++ Y + + E+ ++ Y +
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Query: 347 FPG----------------VTNLG-------YHAMISSLARIGDIEGMEKIFEEWLSVKS 383
G +T G Y+ ++ L + + ++F+ +
Sbjct: 588 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDL 647
Query: 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
+ R N+M+ +K G D+A+ F + G PN ++ +AE +I + +LE L
Sbjct: 648 KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE-NIIGQGLLEEL 705
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 117/272 (43%), Gaps = 9/272 (3%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMT-LYMKIKEYDEVESM 233
D YG L+ RA + + KG+ V ++ + ++ L + D ++ +
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 234 VSEMKEKGIRLDVYSYNIWLSS-CGSQGSTEKMEGVFELMKVDKAVN--PNWTTFSTMAT 290
+ M E G +V+SYNI L C S E +E + +M D+ P+ +++T+
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALE-LLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFP 348
+ K G +KA + + R D V Y+ +++ ++ V N + V P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 349 GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408
+ Y++++ G + ++ S D +L+M + K G +A
Sbjct: 265 DC--MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 409 FFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440
F+S+ + G KP T++ TL +G+ + ++E
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 19/294 (6%)
Query: 168 SLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227
S PD + Y ++N + + A +M D+G + YN ++ K +
Sbjct: 192 SPPDVVS----YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247
Query: 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFST 287
D+ +++ M + G+ D +YN L S G ++ G + M+ D V P+ T+S
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDVVTYSL 306
Query: 288 MATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY--RS 345
+ K G+ +A + + R + Y LL Y + G E++ + +L
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366
Query: 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405
+ P + + +I + A+ G ++ +F + + + ++ K G +
Sbjct: 367 IHP--DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424
Query: 406 AEAFFNSIIEEGGKPNSTSWETLAEGHIR-------ERRILEALS---CLKGAF 449
A +F +I+EG P + + +L G E ILE L CL F
Sbjct: 425 AMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIF 478
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 170 PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229
PD + Y +L + R A+ L ++ + G + YN+++ K K D+
Sbjct: 579 PDII----TYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634
Query: 230 VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289
M + ++L+ ++NI + + G ++ + +F + V PN+ T+ MA
Sbjct: 635 ALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV-PNYWTYRLMA 693
Query: 290 TMYIKMGQVEKAEESLRRVE 309
I G +E+ ++ +E
Sbjct: 694 ENIIGQGLLEELDQLFLSME 713
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 164/350 (46%), Gaps = 12/350 (3%)
Query: 104 LTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAE 163
+T + C VVK + + ++ ALEV++W+N R + AAI L ++ + + + A
Sbjct: 154 MTPTDYCFVVKSVGQ-ESWQRALEVFEWLNLRHWHSPNARMVAAI-LGVLGRWNQESLAV 211
Query: 164 DFFLSLPDTLKDR-RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM 222
+ F T+ DR +VY A++ Y R+ A+ L+D MR +G + +N ++ +
Sbjct: 212 EIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARL 271
Query: 223 K---IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN 279
K + VE ++ ++ G+R D +YN LS+C + + VFE M+ +
Sbjct: 272 KSGGLTPNLAVE-LLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRC-Q 329
Query: 280 PNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRV 339
P+ T++ M ++Y + G +AE +E + D V Y+ LL + E+V V
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEV 389
Query: 340 WNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS-SYDPRIANLMMSWYV 398
+ + + G + Y+ +I + G ++ +++++ + + D +++
Sbjct: 390 YQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLG 449
Query: 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA---LSCL 445
K +A A + +++ G KP ++ L G+ + + EA SC+
Sbjct: 450 KANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCM 499
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/311 (17%), Positives = 132/311 (42%), Gaps = 3/311 (0%)
Query: 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGNAE 196
F++S S + LD A+ + + + S+ L R+Y ++ + + +AE
Sbjct: 853 FKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 197 LLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256
+++ +M + + V +N M+ +Y I++Y + + +KE G+ D +YN +
Sbjct: 913 IMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972
Query: 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD 316
E+ + + M+ + ++P T+ ++ + + K +E+AE+ + S+ D
Sbjct: 973 CRDRRPEEGYLLMQQMR-NLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Query: 317 RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376
R YH ++ + G + ++ + ++ T H ++ S + G+ + EK+
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLS 1091
Query: 377 EWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436
+ + ++ Y++ +++ + +EG +P+ W +
Sbjct: 1092 NLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSK 1151
Query: 437 RILEALSCLKG 447
+E + LK
Sbjct: 1152 EKIEVMLLLKA 1162
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 109/263 (41%), Gaps = 35/263 (13%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D Y A+++ Y R + AE L ++ KG+ ++ YN ++ + + + ++V+ +
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
+M++ G D +YN + G QG + +++ MK NP+ T++ +
Sbjct: 391 QQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVL------ 444
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
++ ++ R VE+ L+S VG K T
Sbjct: 445 ---IDSLGKANRTVEAAA----------LMSEMLDVGIKP----------------TLQT 475
Query: 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414
Y A+I A+ G E E F L + D ++M+ ++ KA + +I
Sbjct: 476 YSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMI 535
Query: 415 EEGGKPNSTSWETLAEGHIRERR 437
+G P+ T +E + G ++E R
Sbjct: 536 SDGHTPSYTLYELMILGLMKENR 558
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 151/325 (46%), Gaps = 9/325 (2%)
Query: 122 YKHALEVYDWMNNRGERFRLSASDAA--IQLDLIAKVHGVASAEDFFLSLP--DTLKDRR 177
+K AL+++ M +G L+ S+ + + LD + K A F++ + R
Sbjct: 349 FKEALKMFYMMEAKG----LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRI 404
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y +++ + A +L+++M G + Y+ ++ + K+ + + +V +
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRI 464
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
G+ + Y+ + +C G ++ ++E M ++ ++T F+ + T K G+
Sbjct: 465 YRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFT-FNVLVTSLCKAGK 523
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA 357
V +AEE +R + S + V + L++ YG+ G+ + + V++ V T Y +
Sbjct: 524 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583
Query: 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417
++ L + G + EK + +V ++ D + N +++ K GN KA + F +++
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643
Query: 418 GKPNSTSWETLAEGHIRERRILEAL 442
P+S ++ +L G R+ + + A+
Sbjct: 644 ILPDSYTYTSLISGLCRKGKTVIAI 668
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 154/363 (42%), Gaps = 19/363 (5%)
Query: 90 SASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ 149
S+ ++ EK G + T V+ K R+K A+E+ D M ++G + + I
Sbjct: 212 SSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIH 271
Query: 150 LDLIAKVHGVASAEDFFLSLPDTLK-----DRRVYGALLNAYVRARMRGNAELLIDKMRD 204
DL + + +A +L L D K + Y L+N + A L+++M
Sbjct: 272 -DL-CRSNRIAKG---YLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLS 326
Query: 205 KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEK 264
G + + + +N ++ ++ + E M M+ KG+ SY + L +
Sbjct: 327 FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDL 386
Query: 265 MEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL 324
G + MK + V T++ M K G +++A L + D V Y L+
Sbjct: 387 ARGFYMRMKRN-GVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI 445
Query: 325 SLYGSVGK----KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380
+ + VG+ KE V R++ + S P + Y +I + R+G ++ +I+E +
Sbjct: 446 NGFCKVGRFKTAKEIVCRIYRVGLS--P--NGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440
+ D N++++ K G +AE F + +G PN+ S++ L G+ L+
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK 561
Query: 441 ALS 443
A S
Sbjct: 562 AFS 564
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 110/268 (41%), Gaps = 3/268 (1%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D + L+N + L+ KM GYA + YN ++ Y K + ++
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
MK KG+ DV +YN+ + K + M+ + ++PN T++T+ +
Sbjct: 252 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR-KRMIHPNEVTYNTLINGFSN 310
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
G+V A + L + S + V ++ L+ + S G +E +++ + + + +
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370
Query: 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA-NLMMSWYVKEGNFDKAEAFFNSI 413
Y ++ L + + + + + F + RI M+ K G D+A N +
Sbjct: 371 YGVLLDGLCKNAEFD-LARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM 429
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEA 441
++G P+ ++ L G + R A
Sbjct: 430 SKDGIDPDIVTYSALINGFCKVGRFKTA 457
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 134/353 (37%), Gaps = 47/353 (13%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
VY L+ Y+R M ++ + M G+ N ++ +K E V S + EM
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEM 184
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
++ I DV ++NI ++ ++GS EK + + M+ P T++T+ Y K G+
Sbjct: 185 LKRKICPDVATFNILINVLCAEGSFEKSSYLMQKME-KSGYAPTIVTYNTVLHWYCKKGR 243
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA 357
+ A E L ++S+ D Y+ L+ + + + + + L R +
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIH---DLCRSNRIAKGYLLLRDM----------- 289
Query: 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417
R I E + N +++ + EG A N ++ G
Sbjct: 290 ------RKRMIHPNEVTY---------------NTLINGFSNEGKVLIASQLLNEMLSFG 328
Query: 418 GKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDM 477
PN ++ L +GHI E EAL F AK P V+ + ++
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALK----MFYMMEAKGLTPSEVSYGVLLDGLCKNAEF 384
Query: 478 GSKEAFVALLRQPG-------YRKEKDYMSLIGLTDEAVAENNKKNDEDSDED 523
F +++ G Y D + G DEAV N+ + + D D
Sbjct: 385 DLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPD 437
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 159/401 (39%), Gaps = 51/401 (12%)
Query: 91 ASVLNDWEKGGRSLTKWEL-CRV---------------VKELRKFRRYKHALEVYDWMNN 134
++++N + K GR T E+ CR+ + + K A+ +Y+ M
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 135 RG---ERFRLSASDAAIQLDLIAKVHGVASAEDFFLS------LPDTLKDRRVYGALLNA 185
G + F + + + + K VA AE+F LP+T+ + L+N
Sbjct: 502 EGHTRDHFTFN-----VLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVS----FDCLING 552
Query: 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD 245
Y + A + D+M G+ Y ++ K E E + + +D
Sbjct: 553 YGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVD 612
Query: 246 VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL 305
YN L++ G+ K +F M V +++ P+ T++++ + + G+ A
Sbjct: 613 TVMYNTLLTAMCKSGNLAKAVSLFGEM-VQRSILPDSYTYTSLISGLCRKGKTVIAILFA 671
Query: 306 RRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGY-------HAM 358
+ E+R + +P + + + K ++ +R + NLG+ +AM
Sbjct: 672 KEAEAR---GNVLPNKVMYTCFVDGMFKAGQWKAGIYFRE---QMDNLGHTPDIVTTNAM 725
Query: 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418
I +R+G IE + E + + N+++ Y K + + + SII G
Sbjct: 726 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGI 785
Query: 419 KPNSTSWETLAEGHIRERRILE-ALSCLKGAFAAEGAKSWR 458
P+ + +L G I E +LE L LK AF G + R
Sbjct: 786 LPDKLTCHSLVLG-ICESNMLEIGLKILK-AFICRGVEVDR 824
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 271 LMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL-SLYGS 329
LM + N N + + + +Y++ G ++ + E R + + G + P Y ++ GS
Sbjct: 112 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMG--LYGFN--PSVYTCNAILGS 167
Query: 330 VGKKEEVYRVWN-----LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384
V K E VW+ L R + P V ++ +I+ L G E + ++ KS
Sbjct: 168 VVKSGEDVSVWSFLKEMLKRKICPDVAT--FNILINVLCAEGSFEKSSYLMQKM--EKSG 223
Query: 385 YDPRIA--NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438
Y P I N ++ WY K+G F A + + +G + ++ L R RI
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRI 279
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA-NLMMSWYVKEGNFDKAEAFFNSI 413
Y +I+ L R+GDI+ + EE ++ K P +A + M+ K G D+A +
Sbjct: 897 YIGLINGLCRVGDIKTAFVVKEEMIAHKIC-PPNVAESAMVRALAKCGKADEATLLLRFM 955
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEAL 442
++ P S+ TL + ++EAL
Sbjct: 956 LKMKLVPTIASFTTLMHLCCKNGNVIEAL 984
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 144/334 (43%), Gaps = 10/334 (2%)
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPD 171
V+ L KF R A ++ + M RG F ++ + K+ V +A+D F +P
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRG--FAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK 350
Query: 172 TLKDRRVYGALLNAYV-RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEV 230
+ ++ L++ +V R+ +L D + G YN ++ Y K
Sbjct: 351 --PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408
Query: 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMAT 290
++ +M+ KG + +VYSY I + G ++ V M D + PN F+ + +
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLIS 467
Query: 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV 350
+ K ++ +A E R + + D ++ L+S G E + +W L + GV
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS--GLCEVDEIKHALWLLRDMISEGV 525
Query: 351 T--NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408
+ Y+ +I++ R G+I+ K+ E + S D N ++ + G DKA +
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 585
Query: 409 FFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
F ++ +G P++ S L G R + EA+
Sbjct: 586 LFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 40/348 (11%)
Query: 93 VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152
VL+D G + +V K + A V + M+ G + + I
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA-- 468
Query: 153 IAKVHGVASAEDFFLSLP--DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH 210
K H + A + F +P D + +L++ +A L+ M +G +
Sbjct: 469 FCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVAN 528
Query: 211 SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFE 270
++ YN ++ +++ E E +V+EM +G LD +YN + G +K +FE
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFE 588
Query: 271 LMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330
M D P+ + + + + G VE+A E
Sbjct: 589 KMLRDGHA-PSNISCNILINGLCRSGMVEEAVEF-------------------------- 621
Query: 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
+KE V R P + ++++I+ L R G IE +F + + D
Sbjct: 622 -QKEMVLR------GSTPDIVT--FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTF 672
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438
N +MSW K G A + IE+G PN +W L + I + +
Sbjct: 673 NTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETL 720
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/420 (19%), Positives = 158/420 (37%), Gaps = 59/420 (14%)
Query: 86 PQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYK---------HALEVYDWMNNR- 135
P++G N+WEK + L ++ F+ YK ++E++ W ++
Sbjct: 46 PEIGGTDSANEWEKLLKPFDLDSLRNSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQN 105
Query: 136 GERFRLSASDAAI-------------QLDLIAKVHGVASAEDFFLSL---------PD-- 171
G R I +L + K G+ E F+S+ P
Sbjct: 106 GYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQT 165
Query: 172 ---TLKDRRVYGA---------LLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMT 219
L+ R VY +L V A + M + + V+M
Sbjct: 166 TRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMK 225
Query: 220 LYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN 279
+ + E D S++ +M + G + Y + S + + E M + V
Sbjct: 226 AFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV- 284
Query: 280 PNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRV 339
P+ TF+ + K ++ +A + + R+ R D + Y YL++ +G+ + +
Sbjct: 285 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344
Query: 340 WNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY----DPRIANLMMS 395
+ YR P + + ++ +I G ++ + + + + +SY D N ++
Sbjct: 345 F--YRIPKPEI--VIFNTLIHGFVTHGRLDDAKAVLSDMV---TSYGIVPDVCTYNSLIY 397
Query: 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK 455
Y KEG A + + +G KPN S+ L +G + +I EA + L +A+G K
Sbjct: 398 GYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN-EMSADGLK 456
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 121/272 (44%), Gaps = 8/272 (2%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRD---KGYAVHSLPYNVMMTLYMKIKEYDEVE 231
D Y ++ Y +A G + ++K+RD +G+ + Y M+ ++
Sbjct: 256 DIVTYNTMIKGYCKA---GQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCV 312
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
++ EM EKGI++ +++++ + +G + VFE M + K PN ++ +
Sbjct: 313 ALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENM-IRKGSKPNVAIYTVLIDG 371
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT 351
Y K G VE A L R+ D V Y +++ G+ EE ++ R +
Sbjct: 372 YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAIN 431
Query: 352 NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411
++ Y ++I L + G ++ E++FEE + D N ++ + K D+A A F
Sbjct: 432 SMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFK 491
Query: 412 SIIEEGGKPNST-SWETLAEGHIRERRILEAL 442
+ EE G + ++ L G +E R EAL
Sbjct: 492 RMEEEEGCDQTVYTYTILLSGMFKEHRNEEAL 523
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 7/231 (3%)
Query: 215 NVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKV 274
N ++ + K+ +E+ + +MKE GI +Y+YN ++ S + E VFE+M+
Sbjct: 191 NALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250
Query: 275 DKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKE 334
+ + P+ T++TM Y K GQ +KA E LR +E+R D++ Y +++ +
Sbjct: 251 GR-IKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITY---MTMIQACYADS 306
Query: 335 EVYRVWNLYRSVFPGVTNLGYHA---MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391
+ LY+ + + HA +I L + G + +FE + S + I
Sbjct: 307 DFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYT 366
Query: 392 LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
+++ Y K G+ + A + +I+EG KP+ ++ + G + R+ EAL
Sbjct: 367 VLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEAL 417
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 106/244 (43%), Gaps = 9/244 (3%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
+Y L++ Y ++ +A L+ +M D+G+ + Y+V++ K +E
Sbjct: 364 IYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTC 423
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
+ G+ ++ Y+ + G G ++ E +FE M +K + ++ + + K +
Sbjct: 424 RFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMS-EKGCTRDSYCYNALIDAFTKHRK 482
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVG--KKEEVYRVWNLY--RSVFPGVTNL 353
V++A +R+E G D+ Y Y + L G + EE ++W++ + + P T
Sbjct: 483 VDEAIALFKRMEEE-EGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITP--TAA 539
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
+ A+ + L G + KI +E + D + M++ K G +A + I
Sbjct: 540 CFRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGI 598
Query: 414 IEEG 417
E G
Sbjct: 599 TERG 602
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 347 FPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVK-SSYDPRIA--NLMMSWYVKEGNF 403
FP +T +A+I S ++G +E ++ W +K + +P + N +M+ V
Sbjct: 183 FP-MTVSAANALIKSFGKLGMVE---ELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFV 238
Query: 404 DKAEAFFNSIIEEGG-KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV 462
D AE F ++E G KP+ ++ T+ +G+ + + +A+ L+ + +
Sbjct: 239 DSAERVFE-VMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDM----ETRGHEADKI 293
Query: 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLI--GLTDEA 508
+ +AC +SD GS A + + G + SL+ GL E
Sbjct: 294 TYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEG 341
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 118/264 (44%), Gaps = 1/264 (0%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D+ Y ALL+ Y ++ A ++++M G++ + YN +++ Y + DE +
Sbjct: 313 DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELK 372
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
++M EKG + DV++Y LS G E +FE M+ + PN TF+ MY
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMR-NAGCKPNICTFNAFIKMYGN 431
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
G+ + + + D V ++ LL+++G G EV V+ +
Sbjct: 432 RGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERET 491
Query: 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414
++ +IS+ +R G E ++ L + D N +++ + G ++++E +
Sbjct: 492 FNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551
Query: 415 EEGGKPNSTSWETLAEGHIRERRI 438
+ KPN ++ +L + + I
Sbjct: 552 DGRCKPNELTYCSLLHAYANGKEI 575
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/328 (20%), Positives = 141/328 (42%), Gaps = 40/328 (12%)
Query: 105 TKWELCRVVKELRKFRRYKHALEVYDW-MNNRGERFRLSASDAAIQLDLIAKVHGVASAE 163
T EL +K L +++ AL +DW M + + L S AI + ++ K V+SA
Sbjct: 134 TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAA 193
Query: 164 DFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223
+ F + +++ G+++ Y +++ +
Sbjct: 194 NMF---------------------------------NGLQEDGFSLDVYSYTSLISAFAN 220
Query: 224 IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGST-EKMEGVFELMKVDKAVNPNW 282
Y E ++ +M+E G + + +YN+ L+ G G+ K+ + E MK D + P+
Sbjct: 221 SGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSD-GIAPDA 279
Query: 283 TTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN- 341
T++T+ T + ++A + +++ D+V Y+ LL +YG + +E +V N
Sbjct: 280 YTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNE 339
Query: 342 -LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE 400
+ P + Y+++IS+ AR G ++ ++ + + D ++S + +
Sbjct: 340 MVLNGFSPSIVT--YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERA 397
Query: 401 GNFDKAEAFFNSIIEEGGKPNSTSWETL 428
G + A + F + G KPN ++
Sbjct: 398 GKVESAMSIFEEMRNAGCKPNICTFNAF 425
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 135/340 (39%), Gaps = 71/340 (20%)
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
T D Y LL+ + RA +A + ++MR+ G + +N + +Y ++ E+
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK------------------ 273
+ E+ G+ D+ ++N L+ G G ++ GVF+ MK
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY 499
Query: 274 ----------------VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR 317
+D V P+ +T++T+ + G E++E+ L +E +
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559
Query: 318 VPYHYLLSLYGSVGKK--------EEVYRVWNLYRSV---------------------FP 348
+ Y LL Y + GK+ EEVY R+V F
Sbjct: 560 LTYCSLLHAYAN-GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFS 618
Query: 349 GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV-----KSSYDPRIA--NLMMSWYVKEG 401
+ G+ I++L + I G ++ + V + + P +A N +M + +
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSA 678
Query: 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441
+F K+E I+ +G KP+ S+ T+ + R R+ +A
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 112/268 (41%), Gaps = 44/268 (16%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM-TLYMKIKEYD---EVESM 233
Y +LL+AY + G L+ + ++ Y+ P V++ TL + + D E E
Sbjct: 561 TYCSLLHAYANGKEIG----LMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERA 616
Query: 234 VSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293
SE+KE+G D+ + N +S G + K GV + MK ++ P+ T++++ M+
Sbjct: 617 FSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMK-ERGFTPSMATYNSLMYMHS 675
Query: 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL 353
+ K+EE LR + L + + P + +
Sbjct: 676 RSADFGKSEEILREI---------------------------------LAKGIKPDI--I 700
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
Y+ +I + R + +IF E + D N + Y + F++A +
Sbjct: 701 SYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEA 441
I+ G +PN ++ ++ +G+ + R EA
Sbjct: 761 IKHGCRPNQNTYNSIVDGYCKLNRKDEA 788
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 92/204 (45%), Gaps = 13/204 (6%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D ++++ Y R +M A ++D M+++G+ YN +M ++ + ++ + E ++
Sbjct: 628 DITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEIL 687
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
E+ KGI+ D+ SYN + + +F M+ + + P+ T++T Y
Sbjct: 688 REILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR-NSGIVPDVITYNTFIGSYAA 746
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
E+A +R + ++ Y+ ++ Y + +K+E + + NL
Sbjct: 747 DSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA-------KLFVEDLRNLD 799
Query: 355 YHAMISSLARIGDIEGMEKIFEEW 378
HA + D+ +E+I ++W
Sbjct: 800 PHA-----PKGEDLRLLERIVKKW 818
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 132/268 (49%), Gaps = 10/268 (3%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y AL+N Y + M +A +++ M + + ++ YN ++ Y K + + ++++M
Sbjct: 395 TYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAM-GVLNKM 453
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
E+ + DV +YN + G+ + + LM D+ + P+ T+++M K +
Sbjct: 454 LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMN-DRGLVPDQWTYTSMIDSLCKSKR 512
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGY 355
VE+A + +E + + V Y L+ Y GK +E + + L ++ P +L +
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLP--NSLTF 570
Query: 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN--LMMSWYVKEGNFDKAEAFFNSI 413
+A+I L G ++ E E VK P ++ +++ +K+G+FD A + F +
Sbjct: 571 NALIHGLCADGKLK--EATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEA 441
+ G KP++ ++ T + + RE R+L+A
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDA 656
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 142/325 (43%), Gaps = 15/325 (4%)
Query: 125 ALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPD--TLKDRRVYGAL 182
A +V++ M +G R A I +A+ + A D F+ + D R Y L
Sbjct: 272 AFKVFNEMPLKGCRRNEVAYTHLIHGLCVAR--RIDEAMDLFVKMKDDECFPTVRTYTVL 329
Query: 183 LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI 242
+ + + + A L+ +M + G + Y V++ ++++ ++ +M EKG+
Sbjct: 330 IKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGL 389
Query: 243 RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302
+V +YN ++ +G E V ELM+ + ++PN T++ + Y K V KA
Sbjct: 390 MPNVITYNALINGYCKRGMIEDAVDVVELME-SRKLSPNTRTYNELIKGYCK-SNVHKAM 447
Query: 303 ESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY--RSVFPGVTNLGYHAMIS 360
L ++ R D V Y+ L+ G + YR+ +L R + P Y +MI
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD--QWTYTSMID 505
Query: 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP 420
SL + +E +F+ + + + ++ Y K G D+A ++ + P
Sbjct: 506 SLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLP 565
Query: 421 NSTSWETL-----AEGHIRERRILE 440
NS ++ L A+G ++E +LE
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLE 590
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 114/258 (44%), Gaps = 2/258 (0%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
+ R Y L+ Y ++ + A +++KM ++ + YN ++ + +D ++
Sbjct: 427 NTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
S M ++G+ D ++Y + S E+ +F+ ++ K VNPN ++ + Y K
Sbjct: 486 SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE-QKGVNPNVVMYTALIDGYCK 544
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
G+V++A L ++ S+ + + ++ L+ + GK +E + + T
Sbjct: 545 AGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVST 604
Query: 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414
+I L + GD + F++ LS + D + Y +EG AE +
Sbjct: 605 DTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664
Query: 415 EEGGKPNSTSWETLAEGH 432
E G P+ ++ +L +G+
Sbjct: 665 ENGVSPDLFTYSSLIKGY 682
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 39/367 (10%)
Query: 92 SVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLD 151
S++ND G +W ++ L K +R + A +++D + +G + A I D
Sbjct: 486 SLMNDR---GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALI--D 540
Query: 152 LIAKVHGVASAEDFFLSL--PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAV 209
K V A + + L + + AL++ A LL +KM G
Sbjct: 541 GYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQP 600
Query: 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVF 269
+++ +K ++D S +M G + D ++Y ++ + +G E +
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSL--- 326
M+ + V+P+ T+S++ Y +GQ A + L+R+ R TG + H LSL
Sbjct: 661 AKMR-ENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM--RDTGCEP-SQHTFLSLIKH 716
Query: 327 -----YG-SVGKKEEVYRVWNLY--------------RSVFPGVTNLGYHAMISSLARIG 366
YG G + E+ + N+ SV P + Y +I + +G
Sbjct: 717 LLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKS--YEKLILGICEVG 774
Query: 367 DIEGMEKIFEEWLSVKSSYDPR--IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTS 424
++ EK+F+ + P + N ++S K ++A + +I G P S
Sbjct: 775 NLRVAEKVFDH-MQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLES 833
Query: 425 WETLAEG 431
+ L G
Sbjct: 834 CKVLICG 840
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 50/88 (56%)
Query: 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414
Y+ +++SLAR G ++ M++++ E L K + N M++ Y K GN ++A + + I+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 415 EEGGKPNSTSWETLAEGHIRERRILEAL 442
E G P+ ++ +L G+ + + + A
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAF 273
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 102/237 (43%), Gaps = 17/237 (7%)
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273
YN ++ + DE++ + EM E + ++Y+YN ++ G+ E+ +
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI- 244
Query: 274 VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333
V+ ++P++ T++++ Y + ++ A + + + R+ V Y +L+ +
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304
Query: 334 EEVYRVWNLYRS--VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVK----SSYDP 387
+E ++ + FP V Y +I SL G E+ E VK + P
Sbjct: 305 DEAMDLFVKMKDDECFPTVRT--YTVLIKSLC------GSERKSEALNLVKEMEETGIKP 356
Query: 388 RIAN--LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
I +++ + F+KA ++E+G PN ++ L G+ + I +A+
Sbjct: 357 NIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAV 413
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 141/366 (38%), Gaps = 61/366 (16%)
Query: 121 RYKHALEVYD-----WMNNR--GERFRL---------SASDAAIQLDLIAKVHGVASAED 164
RYKH++ Y +NN G F++ S DA LDL K++ E
Sbjct: 118 RYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMN---KDER 174
Query: 165 FFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224
F L + Y LLN+ R + + + +M + + YN M+ Y K+
Sbjct: 175 FELKYKLIIG---CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL 231
Query: 225 KEYDEVESMVSEMKEKGIRLDVYSYN---------------------IWLSSC--GSQGS 261
+E VS++ E G+ D ++Y + L C
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291
Query: 262 TEKMEGVFELMKVDKAV--------NPNWTTFSTMATMYIKMGQVEKAEESLRRV-ESRI 312
T + G+ ++D+A+ + + T T + + E+ E+L V E
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351
Query: 313 TG--RDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGYHAMISSLARIGDI 368
TG + Y L+ S K E+ + L + + P V + Y+A+I+ + G I
Sbjct: 352 TGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV--ITYNALINGYCKRGMI 409
Query: 369 EGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428
E + E S K S + R N ++ Y K N KA N ++E P+ ++ +L
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSL 468
Query: 429 AEGHIR 434
+G R
Sbjct: 469 IDGQCR 474
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/276 (17%), Positives = 115/276 (41%), Gaps = 25/276 (9%)
Query: 201 KMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG 260
+M G + Y + Y + + E M+++M+E G+ D+++Y+ + G G
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLG 686
Query: 261 STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM--GQVEKAEESL------------- 305
T V + M+ D P+ TF ++ ++M G+ + +E L
Sbjct: 687 QTNFAFDVLKRMR-DTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVV 745
Query: 306 ----RRVESRITGRDRVPYHYLLSL--YGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359
+ VE +T + +L + G++ E+V+ + P + L ++A++
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISP--SELVFNALL 803
Query: 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
S ++ K+ ++ + V +++ K+G ++ + F ++++ G
Sbjct: 804 SCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYY 863
Query: 420 PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK 455
+ +W+ + +G + ++ ++EA L G K
Sbjct: 864 EDELAWKIIIDG-VGKQGLVEAFYELFNVMEKNGCK 898
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 116/281 (41%), Gaps = 24/281 (8%)
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
T D Y + Y R +AE ++ KMR+ G + Y+ ++ Y + + +
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692
Query: 232 SMVSEMKEKGIRLDVYSY-----NIWLSSCGSQGSTE----------KMEGVFELMK--V 274
++ M++ G +++ ++ G Q +E + + V EL++ V
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMV 752
Query: 275 DKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR--ITGRDRVPYHYLLSLYGSVGK 332
+ +V PN ++ + ++G + AE+ ++ I+ + V ++ LLS + K
Sbjct: 753 EHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELV-FNALLSCCCKLKK 811
Query: 333 KEEVYRVWNLYRSV--FPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
E +V + V P + + +I L + G+ E +F+ L D
Sbjct: 812 HNEAAKVVDDMICVGHLPQLESC--KVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAW 869
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431
+++ K+G + FN + + G K +S ++ L EG
Sbjct: 870 KIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 120/258 (46%), Gaps = 3/258 (1%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
DR G+L+N + R +A L+DKM + GY + YN ++ K K ++
Sbjct: 154 DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFF 213
Query: 235 SEMKEKGIRLDVYSYNIWLSS-CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293
E++ KGIR +V +Y ++ C S ++ + +++K K + PN T+S + ++
Sbjct: 214 KEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK--KKITPNVITYSALLDAFV 271
Query: 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL 353
K G+V +A+E + D V Y L++ + +E ++++L S +
Sbjct: 272 KNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV 331
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
Y+ +I+ + +E K+F E + N ++ + + G+ DKA+ FF+ +
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 414 IEEGGKPNSTSWETLAEG 431
G P+ ++ L G
Sbjct: 392 DFFGISPDIWTYNILLGG 409
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 1/170 (0%)
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
L D Y L+N + +A+ + L +M +G +++ YN ++ + + + D+ +
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
S+M GI D+++YNI L G EK +FE M+ + ++ + T++T+
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ-KREMDLDIVTYTTVIRG 444
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN 341
K G+VE+A + + D V Y ++S + G EV ++
Sbjct: 445 MCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYT 494
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 117/265 (44%), Gaps = 42/265 (15%)
Query: 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS-CGSQGSTEKMEGVFE 270
+ +N +++ +K+K+YD V S+ +M+ GIR D+Y++NI ++ C + + + +
Sbjct: 86 VDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGK 145
Query: 271 LMK-----------------------------VDKAV----NPNWTTFSTMATMYIKMGQ 297
++K VDK V P+ ++ + K +
Sbjct: 146 MLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR 205
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGY 355
V A + + +E + + V Y L++ + + + R+ + + + + P V + Y
Sbjct: 206 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV--ITY 263
Query: 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANL--MMSWYVKEGNFDKAEAFFNSI 413
A++ + + G + +++FEE V+ S DP I +++ D+A F+ +
Sbjct: 264 SALLDAFVKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 414 IEEGGKPNSTSWETLAEGHIRERRI 438
+ +G + S+ TL G + +R+
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRV 346
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 136/304 (44%), Gaps = 13/304 (4%)
Query: 150 LDLIAKVHGVASAEDFFLSLP--DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGY 207
+D K + A+D F + + + R Y L+N + ++ + +KM++ G
Sbjct: 205 IDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGV 264
Query: 208 AVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267
+ YN +M K + + EM+E+G+ ++ +YN + + +
Sbjct: 265 FPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANK 324
Query: 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327
V + MK D +NPN T++T+ + +G++ KA R ++SR V Y+ L+S +
Sbjct: 325 VVDQMKSD-GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383
Query: 328 GSVGKKEEVYRVWNLY--RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS-- 383
G ++ R + P + + Y +I + AR + MEK + LS++
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKP--SKVTYTILIDTFAR---SDNMEKAIQLRLSMEELG 438
Query: 384 -SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
D ++++ + +G ++A F S++E+ +PN + T+ G+ +E AL
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498
Query: 443 SCLK 446
LK
Sbjct: 499 KLLK 502
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 155/333 (46%), Gaps = 13/333 (3%)
Query: 119 FRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIA-KVHG---VASAEDFFLSLPDTLK 174
F ++H E + L + ++ L +I+ K+H +S+ +L+ +T K
Sbjct: 32 FHEFQHTHESISILLRLLLSGNLFSHAQSLLLQVISGKIHSQFFTSSSLLHYLTESETSK 91
Query: 175 DR-RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESM 233
+ R+Y ++N+YV+++ + ++M D G+ S +N ++T + +++ S
Sbjct: 92 TKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSF 151
Query: 234 VSEMKEKGIRLDVYSYNIWLSSCGSQGSTEK-MEGVFELMKVDKAVNPNWTTFSTMATMY 292
+E K K + LDVYS+ I + C G EK + + EL + +PN ++T+
Sbjct: 152 FNENKSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEF--GFSPNVVIYTTLIDGC 208
Query: 293 IKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYR--SVFPGV 350
K G++EKA++ + + Y L++ G K++ + ++ + VFP +
Sbjct: 209 CKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268
Query: 351 TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFF 410
Y+ +++ L + G + ++F+E S + N ++ +E ++A
Sbjct: 269 YT--YNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVV 326
Query: 411 NSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443
+ + +G PN ++ TL +G ++ +ALS
Sbjct: 327 DQMKSDGINPNLITYNTLIDGFCGVGKLGKALS 359
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/330 (18%), Positives = 127/330 (38%), Gaps = 71/330 (21%)
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPD 171
V+ +L K R K A +V+D M RG + +++
Sbjct: 274 VMNQLCKDGRTKDAFQVFDEMRERG-----------VSCNIVT----------------- 305
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
Y L+ R A ++D+M+ G + + YN ++ + + + +
Sbjct: 306 -------YNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
S+ ++K +G+ + +YNI +S +G T + + M+ ++ + P+ T++ +
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEME-ERGIKPSKVTYTILIDT 417
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT 351
+ + +EKA ++ R++ EE+ V +++
Sbjct: 418 FARSDNMEKA------IQLRLS-------------------MEELGLVPDVHT------- 445
Query: 352 NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411
Y +I G + ++F+ + + I N M+ Y KEG+ +A
Sbjct: 446 ---YSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLK 502
Query: 412 SIIEEGGKPNSTSWETLAEGHIRERRILEA 441
+ E+ PN S+ + E +ER+ EA
Sbjct: 503 EMEEKELAPNVASYRYMIEVLCKERKSKEA 532
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 7/179 (3%)
Query: 167 LSLPDTLKDRRV------YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTL 220
LSL LK R + Y L++ + R A ++ +M ++G + Y +++
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417
Query: 221 YMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP 280
+ + ++ + M+E G+ DV++Y++ + +G + +F+ M V+K P
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM-VEKNCEP 476
Query: 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRV 339
N ++TM Y K G +A + L+ +E + + Y Y++ + K +E R+
Sbjct: 477 NEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERL 535
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Query: 147 AIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGNAELLIDKMRD 204
I +D A+ + A LS+ + + D Y L++ + A L M +
Sbjct: 412 TILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVE 471
Query: 205 KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEK 264
K + + YN M+ Y K ++ EM+EK + +V SY + + +++
Sbjct: 472 KNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKE 531
Query: 265 MEGVFELMKVDKAVNPNWTTFSTMA 289
E + E M +D ++P+ + S ++
Sbjct: 532 AERLVEKM-IDSGIDPSTSILSLIS 555
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 142/315 (45%), Gaps = 22/315 (6%)
Query: 125 ALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV------ 178
AL+ + +++N + AS + +D+ A++H + SL ++ R+
Sbjct: 73 ALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTV----WSLIHRMRSLRIGPSPKT 128
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
+ + Y A A L M + G +N ++ + K K ++ + ++
Sbjct: 129 FAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 188
Query: 239 EKGIRLDVYSYNIWLSS-CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
+ +D +YN+ L+ C + + + +E + E+ V++ +NPN TT++TM + + GQ
Sbjct: 189 GR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEM--VERGINPNLTTYNTMLKGFFRAGQ 245
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGY 355
+ A E ++ R D V Y ++ +G G+ + V++ + V P V Y
Sbjct: 246 IRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVAT--Y 303
Query: 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA--NLMMSWYVKEGNFDKAEAFFNSI 413
+AMI L + ++E +FEE V+ Y+P + N+++ G F + E +
Sbjct: 304 NAMIQVLCKKDNVENAVVMFEEM--VRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRM 361
Query: 414 IEEGGKPNSTSWETL 428
EG +PN ++ +
Sbjct: 362 ENEGCEPNFQTYNMM 376
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 41/251 (16%)
Query: 150 LDLIAKVHGVASAEDFFLSLPDTLK-DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYA 208
LD++ K V A + F +L D Y +LN + + A ++ +M ++G
Sbjct: 168 LDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGIN 227
Query: 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGV 268
+ YN M+ + + + EMK++ +DV +Y + G G ++ V
Sbjct: 228 PNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNV 287
Query: 269 FELM-----------------------KVDKAV-----------NPNWTTFSTMATMYIK 294
F+ M V+ AV PN TT++ +
Sbjct: 288 FDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFH 347
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG--VTN 352
G+ + EE ++R+E+ + Y+ ++ Y EV + L+ + G + N
Sbjct: 348 AGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECS---EVEKALGLFEKMGSGDCLPN 404
Query: 353 L-GYHAMISSL 362
L Y+ +IS +
Sbjct: 405 LDTYNILISGM 415
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y A++ + NA ++ ++M +GY + YNV++ E+ E ++ M
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRM 361
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMAT-MYIK 294
+ +G + +YN+ + EK G+FE M + PN T++ + + M+++
Sbjct: 362 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCL-PNLDTYNILISGMFVR 418
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 6/188 (3%)
Query: 123 KHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV--YG 180
K A V+D M G ++ +A IQ+ + K V +A F + + V Y
Sbjct: 282 KRARNVFDEMIREGVLPSVATYNAMIQV--LCKKDNVENAVVMFEEMVRRGYEPNVTTYN 339
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
L+ A E L+ +M ++G + YN+M+ Y + E ++ + +M
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 399
Query: 241 GIRLDVYSYNIWLSSCGSQGSTEKM--EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
++ +YNI +S + +E M G L V++ P TF+ + + G
Sbjct: 400 DCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQ 459
Query: 299 EKAEESLR 306
A+E LR
Sbjct: 460 AFAKEILR 467
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 127/289 (43%), Gaps = 7/289 (2%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D Y L+ AYVRA A +I+ M KG +++ Y ++ Y K + DE +
Sbjct: 350 DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLF 409
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
MKE G + +YN LS G + + +M + MK + +PN T++TM +
Sbjct: 410 YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN-GCSPNRATWNTMLALCGN 468
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN-LYRSVFPGVTNL 353
G + R ++S DR ++ L+S YG G + + +++ + R+ F
Sbjct: 469 KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 528
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
Y+A++++LAR GD E + + S +LM+ Y K GN+ E N I
Sbjct: 529 -YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRI 587
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV 462
E P+ TL + + R AL+ + AF ++P V
Sbjct: 588 KEGQIFPSWMLLRTLLLANFKCR----ALAGSERAFTLFKKHGYKPDMV 632
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 36/304 (11%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y +++AY +A A L M++ G ++ YN +++L K +E+ M+ +M
Sbjct: 388 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDM 447
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
K G + ++N L+ CG++G + + VF MK P+ TF+T+ + Y + G
Sbjct: 448 KSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMK-SCGFEPDRDTFNTLISAYGRCGS 506
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA 357
A + + Y+ LL+ G V + +S T Y
Sbjct: 507 EVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSL 566
Query: 358 MISSLARIGDIEGMEK---------IFEEWLSVKS------------------------S 384
M+ A+ G+ G+E+ IF W+ +++
Sbjct: 567 MLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHG 626
Query: 385 YDPR--IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
Y P I N M+S + + +D+AE SI E+G P+ ++ +L + ++R +A
Sbjct: 627 YKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAE 686
Query: 443 SCLK 446
LK
Sbjct: 687 EILK 690
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 139/322 (43%), Gaps = 14/322 (4%)
Query: 121 RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHG-VASAEDFFLSLPDTLK----- 174
+Y+ A+++++ M G S + ++I V G + + L + D ++
Sbjct: 225 KYEKAIDLFERMKEMG------PSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLK 278
Query: 175 -DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESM 233
D +L+A R + A+ +++ GY ++ YN ++ ++ K Y E S+
Sbjct: 279 FDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSV 338
Query: 234 VSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293
+ EM+E D +YN +++ G +++ GV E+M K V PN T++T+ Y
Sbjct: 339 LKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM-TKKGVMPNAITYTTVIDAYG 397
Query: 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL 353
K G+ ++A + ++ + Y+ +LSL G + E+ ++ +S
Sbjct: 398 KAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRA 457
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
++ M++ G + + ++F E S D N ++S Y + G+ A + +
Sbjct: 458 TWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM 517
Query: 414 IEEGGKPNSTSWETLAEGHIRE 435
G T++ L R+
Sbjct: 518 TRAGFNACVTTYNALLNALARK 539
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 40/273 (14%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y ALLNA R + E +I M+ KG+ Y++M+ Y K Y +E + + +
Sbjct: 528 TYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRI 587
Query: 238 KE-----------------------------------KGIRLDVYSYNIWLSSCGSQGST 262
KE G + D+ +N LS
Sbjct: 588 KEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMY 647
Query: 263 EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHY 322
++ EG+ E ++ D ++P+ T++++ MY++ G+ KAEE L+ +E D V Y+
Sbjct: 648 DQAEGILESIRED-GLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNT 706
Query: 323 LLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380
++ + G +E R+ + R + P + Y+ +S +G +E + E
Sbjct: 707 VIKGFCRRGLMQEAVRMLSEMTERGIRPCI--FTYNTFVSGYTAMGMFAEIEDVIECMAK 764
Query: 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
+ +++ Y + G + +A F + I
Sbjct: 765 NDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 797
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 145/349 (41%), Gaps = 36/349 (10%)
Query: 81 SLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFR 140
S+++ P G + + + L + +L +VK L ++ A+ +++W+
Sbjct: 114 SIVEQPLTGLSRFFDSVKS---ELLRTDLVSLVKGLDDSGHWERAVFLFEWL-------V 163
Query: 141 LSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLID 200
LS++ A++LD H V + F+ R+ G R A L+D
Sbjct: 164 LSSNSGALKLD-----HQVI---EIFV---------RILG-------RESQYSVAAKLLD 199
Query: 201 KMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG 260
K+ + Y + Y ++ Y + +Y++ + MKE G + +YN+ L G G
Sbjct: 200 KIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMG 259
Query: 261 -STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVP 319
S K+ GV + M+ K + + T ST+ + + G + +A+E ++S V
Sbjct: 260 RSWRKILGVLDEMR-SKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVT 318
Query: 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379
Y+ LL ++G G E V ++ Y+ ++++ R G + + E
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMT 378
Query: 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428
+ ++ Y K G D+A F S+ E G PN+ ++ +
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAV 427
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 101/256 (39%), Gaps = 23/256 (8%)
Query: 201 KMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG 260
+M+ G+ +N +++ Y + + M EM G V +YN L++ +G
Sbjct: 481 EMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKG 540
Query: 261 STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY 320
E V MK K P T++S M Y K G E R+E+RI P
Sbjct: 541 DWRSGENVISDMK-SKGFKPTETSYSLMLQCYAKGGNYLGIE----RIENRIKEGQIFPS 595
Query: 321 HYLL-----------SLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIE 369
LL +L GS R + L++ + +++M+S R +
Sbjct: 596 WMLLRTLLLANFKCRALAGS-------ERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 648
Query: 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLA 429
E I E S D N +M YV+ G KAE ++ + KP+ S+ T+
Sbjct: 649 QAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVI 708
Query: 430 EGHIRERRILEALSCL 445
+G R + EA+ L
Sbjct: 709 KGFCRRGLMQEAVRML 724
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 36/171 (21%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK----------- 223
D ++ ++L+ + R M AE +++ +R+ G + + YN +M +Y++
Sbjct: 630 DMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEIL 689
Query: 224 ------------------IKEY------DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ 259
IK + E M+SEM E+GIR +++YN ++S +
Sbjct: 690 KTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAM 749
Query: 260 GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310
G ++E V E M + PN TF + Y + G+ +A + + ++++
Sbjct: 750 GMFAEIEDVIECMAKNDC-RPNELTFKMVVDGYCRAGKYSEAMDFVSKIKT 799
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/338 (21%), Positives = 148/338 (43%), Gaps = 4/338 (1%)
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPD 171
+++EL A+ Y++ R R A+ + + + V A+ F +
Sbjct: 202 IIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFA 261
Query: 172 TLKDRRVYG--ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK-EYD 228
VY AL++AY R+ + A + + M++ G + + YN ++ K E+
Sbjct: 262 GGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFK 321
Query: 229 EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM 288
+V EM+ G++ D ++N L+ C G E +F+ M ++ + + +++T+
Sbjct: 322 QVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEM-TNRRIEQDVFSYNTL 380
Query: 289 ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP 348
K GQ++ A E L ++ + + V Y ++ + G+ +E ++ R +
Sbjct: 381 LDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGI 440
Query: 349 GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408
+ + Y+ ++S ++G E I E SV D N ++ Y K+G +D+ +
Sbjct: 441 ALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKK 500
Query: 409 FFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446
F + E PN ++ TL +G+ + EA+ +
Sbjct: 501 VFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFR 538
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 5/205 (2%)
Query: 122 YKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLP--DTLKDRRVY 179
++ A ++D M NR R LD I K + A + +P + + Y
Sbjct: 355 WEAARNLFDEMTNR--RIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSY 412
Query: 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239
+++ + +A A L +MR G A+ + YN ++++Y K+ +E ++ EM
Sbjct: 413 STVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMAS 472
Query: 240 KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299
GI+ DV +YN L G QG ++++ VF MK + + PN T+ST+ Y K G +
Sbjct: 473 VGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVL-PNLLTYSTLIDGYSKGGLYK 531
Query: 300 KAEESLRRVESRITGRDRVPYHYLL 324
+A E R +S D V Y L+
Sbjct: 532 EAMEIFREFKSAGLRADVVLYSALI 556
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/278 (17%), Positives = 110/278 (39%), Gaps = 39/278 (14%)
Query: 174 KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESM 233
KD Y ALL Y + + + +M+ + + L Y+ ++ Y K Y E +
Sbjct: 477 KDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI 536
Query: 234 VSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293
E K G+R DV Y+ + + G + + M + ++PN T++++ +
Sbjct: 537 FREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEM-TKEGISPNVVTYNSIIDAFG 595
Query: 294 KMGQVEKAEE-----SLRRVESRITGRDRVPYHYLLSLYGSVGKK-------------EE 335
+ ++++ + SL S ++ + ++ L+G + + +E
Sbjct: 596 RSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQE 655
Query: 336 VYRVWNLYRS-----VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
+ + ++R + P V + A++++ +R E + EE + +
Sbjct: 656 LSCILEVFRKMHQLEIKPNVVT--FSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVH 713
Query: 391 NLMMS-----WYVKEGNFDK--------AEAFFNSIIE 415
L+M W + FDK A AF+N++ +
Sbjct: 714 GLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTD 751
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 156/360 (43%), Gaps = 26/360 (7%)
Query: 93 VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152
+L + GG LT ++ L K ++ ALE++ N+G S+A +
Sbjct: 475 LLRNMSPGGGLLTT-----LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL---- 525
Query: 153 IAKVHGVASA---EDFFLSLPDTLK-----DRRVYGALLNAYVRARMRGNAELLIDKMRD 204
HG+ A ++ F + L DR Y L++ + A + +D+M
Sbjct: 526 ----HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 581
Query: 205 KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEK 264
+G + Y++++ + + +E + K G+ DVY+Y++ + C TE+
Sbjct: 582 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 641
Query: 265 MEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL 324
+ F+ M + K V PN ++ + Y + G++ A E ++ + + Y L+
Sbjct: 642 GQEFFDEM-MSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700
Query: 325 SLYGSVGKKEEVYRVWNLYR--SVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVK 382
+ + EE ++ R + P V + Y A+I ++G + +E + E S
Sbjct: 701 KGMSIISRVEEAKLLFEEMRMEGLEPNVFH--YTALIDGYGKLGQMVKVECLLREMHSKN 758
Query: 383 SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
+ +M+ Y ++GN +A N + E+G P+S +++ G++++ +LEA
Sbjct: 759 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 818
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 138/355 (38%), Gaps = 41/355 (11%)
Query: 125 ALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLN 184
AL+V+ + N+G F + + L+ E F + D ++ +N
Sbjct: 223 ALDVFPVLANKG-MFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAIN 281
Query: 185 AYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEV----ESMV------ 234
A+ + A L KM + G A + + +N ++ YDE E MV
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 341
Query: 235 -------------------------SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVF 269
EM +KG +V YN + S GS K +
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 401
Query: 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329
+LM V K ++ +T++T+ Y K GQ + AE L+ + S ++ + ++ L S
Sbjct: 402 DLM-VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 460
Query: 330 VGKKEEVYRVWN--LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP 387
+ R L R++ PG L +IS L + G +++ ++L+ D
Sbjct: 461 HLMFDSALRFVGEMLLRNMSPGGGLL--TTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518
Query: 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
R +N ++ + G D+A I+ G + S+ TL G ++++ EA
Sbjct: 519 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 573
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 11/198 (5%)
Query: 147 AIQLDLIAKVHGVASAEDFFLSL------PDTLKDRRVYGALLNAYVRARMRGNAELLID 200
++ +D K ++FF + P+T+ VY L+ AY R+ A L +
Sbjct: 627 SVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTV----VYNHLIRAYCRSGRLSMALELRE 682
Query: 201 KMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG 260
M+ KG + +S Y ++ I +E + + EM+ +G+ +V+ Y + G G
Sbjct: 683 DMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 742
Query: 261 STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY 320
K+E + M K V+PN T++ M Y + G V +A L + + D + Y
Sbjct: 743 QMVKVECLLREMH-SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 801
Query: 321 HYLLSLYGSVGKKEEVYR 338
+ Y G E ++
Sbjct: 802 KEFIYGYLKQGGVLEAFK 819
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 114/269 (42%), Gaps = 9/269 (3%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y L+ RA+ G+A ++ +M KG+ + + YN ++ +++ ++ + M
Sbjct: 345 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 404
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
KG+ L +YN + G + E + + M + N N +F+++ +
Sbjct: 405 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM-LSIGFNVNQGSFTSVICLLCSHLM 463
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSV----GKKEEVYRVWNLYRSVFPGVTNL 353
+ A LR V + R+ P LL+ S GK + +W + + V
Sbjct: 464 FDSA---LRFVGEMLL-RNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 519
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
+A++ L G ++ +I +E L D N ++S + D+A F + +
Sbjct: 520 TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 579
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEAL 442
++ G KP++ ++ L G ++ EA+
Sbjct: 580 VKRGLKPDNYTYSILICGLFNMNKVEEAI 608
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 123/305 (40%), Gaps = 46/305 (15%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
VY L+++++ A A + D M KG ++ S YN ++ Y K + D E ++ EM
Sbjct: 380 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 439
Query: 238 KEKGIRLDVYSY-NIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296
G ++ S+ ++ C + V E++ + ++P +T+ + K G
Sbjct: 440 LSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLL--RNMSPGGGLLTTLISGLCKHG 497
Query: 297 QVEKAEE-------------------------------SLRRVESRITGR----DRVPYH 321
+ KA E R++ I GR DRV Y+
Sbjct: 498 KHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYN 557
Query: 322 YLLSLYGSVGKK--EEVYRVWN--LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377
L+S G GKK +E + + + R + P N Y +I L + +E + +++
Sbjct: 558 TLIS--GCCGKKKLDEAFMFLDEMVKRGLKP--DNYTYSILICGLFNMNKVEEAIQFWDD 613
Query: 378 WLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437
D ++M+ K ++ + FF+ ++ + +PN+ + L + R R
Sbjct: 614 CKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 673
Query: 438 ILEAL 442
+ AL
Sbjct: 674 LSMAL 678
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Query: 326 LYGSVGKKEEVYRVWNLYRSVFPGVTNLGY--HAMISSLARIGDIEGMEKIFEEWLSVKS 383
L S+ + E + + V GV+ Y I++ + G +E K+F +
Sbjct: 245 LLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGV 304
Query: 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443
+ + N ++ G +D+A F ++E G +P ++ L +G R +RI +A
Sbjct: 305 APNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYF 364
Query: 444 CLKGAFAAEGAKSWRPKPVNVIN 466
LK E K P V V N
Sbjct: 365 VLK-----EMTKKGFPPNVIVYN 382
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 135/301 (44%), Gaps = 15/301 (4%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D Y AL+N + + +A ++D+MR K ++ ++ YN+M+ + D ++
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 216
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
+++ + V +Y I + + +G ++ + + M + + + P+ T++T+ K
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEM-LSRGLKPDMFTYNTIIRGMCK 275
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
G V++A E +R +E + D + Y+ LL + GK EE ++ S +
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335
Query: 355 YHAMISSLARIGDIEGMEKIF----EEWLSVKS-SYDPRIANLMMSWYVKEGNFDKAEAF 409
Y +I++L R G IE + E+ L+ + SYDP IA + +EG D A F
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA-----AFCREGRLDVAIEF 390
Query: 410 FNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFK 469
++I +G P+ ++ T+ + + +AL F G P + F
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALE----IFGKLGEVGCSPNSSSYNTMFS 446
Query: 470 A 470
A
Sbjct: 447 A 447
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 129/307 (42%), Gaps = 8/307 (2%)
Query: 198 LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257
L+D+M +G YN ++ K D MV ++ KG DV SYNI L +
Sbjct: 250 LMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Query: 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR 317
+QG E+ E + M +K +PN T+S + T + G++E+A L+ ++ + D
Sbjct: 310 NQGKWEEGEKLMTKMFSEKC-DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 368
Query: 318 VPYHYLLSLYGSVGKKEEVYRVWNLYRS--VFPGVTNLGYHAMISSLARIGDIEGMEKIF 375
Y L++ + G+ + S P + N Y+ ++++L + G + +IF
Sbjct: 369 YSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVN--YNTVLATLCKNGKADQALEIF 426
Query: 376 EEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435
+ V S + N M S G+ +A ++ G P+ ++ ++ RE
Sbjct: 427 GKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCRE 486
Query: 436 RRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKE 495
+ EA L + E S + ++ F KA E + E+ V +P E
Sbjct: 487 GMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRP---NE 543
Query: 496 KDYMSLI 502
Y LI
Sbjct: 544 TTYTVLI 550
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 13/266 (4%)
Query: 170 PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229
PD + Y LL A + E L+ KM + + + Y++++T + + +E
Sbjct: 296 PDVIS----YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEE 351
Query: 230 VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289
+++ MKEKG+ D YSY+ +++ +G + E M D + P+ ++T+
Sbjct: 352 AMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCL-PDIVNYNTVL 410
Query: 290 TMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG 349
K G+ ++A E ++ + Y+ + S S G K + S
Sbjct: 411 ATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGID 470
Query: 350 VTNLGYHAMISSLARIGDIEGM-EKIFEEWLSVKSS-YDPRIA--NLMMSWYVKEGNFDK 405
+ Y++MIS L R EGM ++ FE + ++S + P + N+++ + K +
Sbjct: 471 PDEITYNSMISCLCR----EGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIED 526
Query: 406 AEAFFNSIIEEGGKPNSTSWETLAEG 431
A S++ G +PN T++ L EG
Sbjct: 527 AINVLESMVGNGCRPNETTYTVLIEG 552
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 122/273 (44%), Gaps = 3/273 (1%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D Y ++ + M A ++ + KG + YN+++ + +++E E ++
Sbjct: 262 DMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLM 321
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
++M + +V +Y+I +++ G E+ + +LMK +K + P+ ++ + + +
Sbjct: 322 TKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK-EKGLTPDAYSYDPLIAAFCR 380
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
G+++ A E L + S D V Y+ +L+ GK ++ ++ V +
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 440
Query: 355 YHAMISSLARIGD-IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
Y+ M S+L GD I + I E +S D N M+S +EG D+A +
Sbjct: 441 YNTMFSALWSSGDKIRALHMIL-EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDM 499
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446
P+ ++ + G + RI +A++ L+
Sbjct: 500 RSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLE 532
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 10/177 (5%)
Query: 262 TEKMEGVFELMKVDKAV----------NPNWTTFSTMATMYIKMGQVEKAEESLRRVESR 311
T+ ++G F L + KAV P+ ++ + + KM +++ A L R+ S+
Sbjct: 128 TKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK 187
Query: 312 ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGM 371
D V Y+ ++ S GK + +V N S T + Y +I + G ++
Sbjct: 188 DFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEA 247
Query: 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428
K+ +E LS D N ++ KEG D+A ++ +G +P+ S+ L
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNIL 304
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 3/191 (1%)
Query: 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304
D I+ SC S E + + E M V K NP+ + + + + + KA
Sbjct: 89 DTQMLKIFHRSCRSGNYIESLH-LLETM-VRKGYNPDVILCTKLIKGFFTLRNIPKAVRV 146
Query: 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364
+ +E + D Y+ L++ + + + ++ RV + RS + Y+ MI SL
Sbjct: 147 MEILE-KFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 205
Query: 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTS 424
G ++ K+ + LS +++ + EG D+A + ++ G KP+ +
Sbjct: 206 RGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFT 265
Query: 425 WETLAEGHIRE 435
+ T+ G +E
Sbjct: 266 YNTIIRGMCKE 276
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 128/274 (46%), Gaps = 13/274 (4%)
Query: 175 DRRVYGALLNAYVRARMRGNAEL---LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
D YG ++N + RG+ +L L++KM L YN ++ K K D+
Sbjct: 220 DLVTYGVVVNGLCK---RGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
++ EM+ KGIR +V +Y+ +S + G + M +++ +NP+ TFS +
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDA 335
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS--VFPG 349
++K G++ +AE+ + R V Y L++ + + +E +++ S FP
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 350 VTNLGYHAMISSLARIGDI-EGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408
V Y+ +I + + EGME +F E + N+++ + G+ D A+
Sbjct: 396 VVT--YNTLIKGFCKYKRVEEGME-VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452
Query: 409 FFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
F ++ +G PN ++ TL +G + ++ +A+
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 126/270 (46%), Gaps = 9/270 (3%)
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
+LLN Y ++ A L+D+M GY +++ +N ++ + E +++ M K
Sbjct: 156 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 215
Query: 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK 300
G + D+ +Y + ++ +G T+ + M+ K + P ++T+ K ++
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGK-LEPGVLIYNTIIDGLCKYKHMDD 274
Query: 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGYHAM 358
A + +E++ + V Y L+S + G+ + R+ + + R + P V + A+
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV--FTFSAL 332
Query: 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANL--MMSWYVKEGNFDKAEAFFNSIIEE 416
I + + G + EK+++E VK S DP I +++ + D+A+ F ++ +
Sbjct: 333 IDAFVKEGKLVEAEKLYDEM--VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390
Query: 417 GGKPNSTSWETLAEGHIRERRILEALSCLK 446
P+ ++ TL +G + +R+ E + +
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 149/351 (42%), Gaps = 15/351 (4%)
Query: 92 SVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLD 151
++LN E+G ++ L K++ AL ++ M +G R +
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR-----PNVVTYSS 296
Query: 152 LIAKVHGVASAEDFFLSLPDTLK-----DRRVYGALLNAYVRARMRGNAELLIDKMRDKG 206
LI+ + D L D ++ D + AL++A+V+ AE L D+M +
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRS 356
Query: 207 YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS-CGSQGSTEKM 265
+ Y+ ++ + DE + M M K DV +YN + C + E M
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 266 EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325
E VF M + + N T++ + + G + A+E + + S + + Y+ LL
Sbjct: 417 E-VFREMS-QRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474
Query: 326 LYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY 385
GK E+ V+ + T Y+ MI + + G +E +F LS+K
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN-LSLKGVK 533
Query: 386 DPRIA-NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435
+A N M+S + ++G+ ++A+A F + E+G PNS + TL +R+
Sbjct: 534 PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRD 584
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 101/241 (41%), Gaps = 2/241 (0%)
Query: 166 FLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK 225
F+ D Y L+ + + + + +M +G +++ YN+++ +
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445
Query: 226 EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTF 285
+ D + + EM G+ ++ +YN L G EK VFE ++ K + P T+
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTY 504
Query: 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345
+ M K G+VE + + + D V Y+ ++S + G KEE ++ +
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 564
Query: 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405
+ Y+ +I + R GD E ++ +E S + D L+ + + +G DK
Sbjct: 565 DGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM-LHDGRLDK 623
Query: 406 A 406
+
Sbjct: 624 S 624
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 156/334 (46%), Gaps = 19/334 (5%)
Query: 117 RKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFF--LSLPDTLK 174
+K RR LE++ M + G +++ I ++ + + V ++ S+
Sbjct: 200 KKRRRIDLCLEIFRRMVDSG--VKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKP 257
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
+ Y ++NAYV+ R E ++ M+ G + + Y ++M L +K + + E +
Sbjct: 258 EAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLF 317
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
EM+E+GI DV+ Y +S +G+ ++ +F+ + +K ++P+ T+ + K
Sbjct: 318 DEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDEL-TEKGLSPSSYTYGALIDGVCK 376
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354
+G++ AE + ++S+ +V ++ L+ Y G +E ++++ + G
Sbjct: 377 VGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDV-------MEQKG 429
Query: 355 YHAMISSLARIGDIEGMEKIFEE---WLSVKSSYDPRIANL----MMSWYVKEGNFDKAE 407
+ A + + I K ++E WL +++ + ++ Y KEGN ++A+
Sbjct: 430 FQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAK 489
Query: 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441
F + +G +PN+ ++ + + ++ +I EA
Sbjct: 490 RLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEA 523
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 9/248 (3%)
Query: 123 KHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKD--RRVYG 180
K A ++D + +G S+ +D + KV + +AE + + + V+
Sbjct: 346 KRAFLLFDELTEKG--LSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFN 403
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
L++ Y R M A ++ D M KG+ N + + + ++K YDE + + M E
Sbjct: 404 TLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEG 463
Query: 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK 300
G++L SY + +G+ E+ + +F M K V PN T++ M Y K G++++
Sbjct: 464 GVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMS-SKGVQPNAITYNVMIYAYCKQGKIKE 522
Query: 301 AEESLRRVESRITGRDRVPYHYLLSLYGSV--GKKEEVYRVWNLYRSVFPGVTNLGYHAM 358
A + +E+ G D Y Y ++G +E R+++ ++ Y M
Sbjct: 523 ARKLRANMEA--NGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVM 580
Query: 359 ISSLARIG 366
IS L++ G
Sbjct: 581 ISGLSKAG 588
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/295 (19%), Positives = 115/295 (38%), Gaps = 36/295 (12%)
Query: 182 LLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKG 241
+ YV M + D M KG ++ V + K + D + M + G
Sbjct: 160 VFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSG 219
Query: 242 IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKA 301
+++ VYS I + +G EK + + + V K + P T++T+ Y+K
Sbjct: 220 VKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSV-KGIKPEAYTYNTIINAYVKQRDFSGV 278
Query: 302 EESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRV---------------------W 340
E L+ ++ ++V Y L+ L GK + ++ W
Sbjct: 279 EGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISW 338
Query: 341 NLYRS-------VFPGVTNLG-------YHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386
N + +F +T G Y A+I + ++G++ E + E S +
Sbjct: 339 NCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNIT 398
Query: 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441
+ N ++ Y ++G D+A ++ + ++G + + + T+A R +R EA
Sbjct: 399 QVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEA 453
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D Y +L++ A A L +M KG +S+ Y VM++ K + DE +
Sbjct: 538 DSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLY 597
Query: 235 SEMKEKGIRLDVYSYNIWLSS 255
EMK KG +D Y + S
Sbjct: 598 DEMKRKGYTIDNKVYTALIGS 618
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 11/162 (6%)
Query: 119 FRRYKHALEVYDWMNNRGER-FRLSASDAAIQLDLIAKVHGVASAEDFFLSL------PD 171
F R K E W+ E +LS +D+ K V A+ F+ + P+
Sbjct: 444 FNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPN 503
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
+ Y ++ AY + A L M G S Y ++ DE
Sbjct: 504 AI----TYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAM 559
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273
+ SEM KG+ + +Y + +S G +++ G+++ MK
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMK 601
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 131/269 (48%), Gaps = 9/269 (3%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
+Y L+ +++ G+A ++ +M+++G A YN ++ K K DE S + EM
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
E G++ + ++Y ++S + + M+ + V PN + + Y K G+
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGK 572
Query: 298 VEKAEESLRR-VESRITGRDRVPYHYLLS-LYGS--VGKKEEVYRVWNLYRSVFPGVTNL 353
V +A + R V+ I G D Y L++ L+ + V EE++R + + P V
Sbjct: 573 VIEACSAYRSMVDQGILG-DAKTYTVLMNGLFKNDKVDDAEEIFREMR-GKGIAPDV--F 628
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
Y +I+ +++G+++ IF+E + + + I N+++ + + G +KA+ + +
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEAL 442
+G PN+ ++ T+ +G+ + + EA
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 121/271 (44%), Gaps = 12/271 (4%)
Query: 172 TLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
L ++ + L+N Y + A M D+G + Y V+M K + D+ E
Sbjct: 553 VLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
+ EM+ KGI DV+SY + ++ G+ +K +F+ M V++ + PN ++ +
Sbjct: 613 EIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM-VEEGLTPNVIIYNMLLGG 671
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPG 349
+ + G++EKA+E L + + + V Y ++ Y G E +R+++ + + P
Sbjct: 672 FCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP- 730
Query: 350 VTNLGYHAMISSLARIGDIEGMEKIF-EEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408
+ Y ++ R+ D+E IF SS P N +++W K G +
Sbjct: 731 -DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAP--FNALINWVFKFGKTELKTE 787
Query: 409 FFNSIIEEG----GKPNSTSWETLAEGHIRE 435
N +++ GKPN ++ + + +E
Sbjct: 788 VLNRLMDGSFDRFGKPNDVTYNIMIDYLCKE 818
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 16/288 (5%)
Query: 173 LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVES 232
L D + Y L+N + +AE + +MR KG A Y V++ + K+ + S
Sbjct: 589 LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 233 MVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMY 292
+ EM E+G+ +V YN+ L G EK + + + M V K ++PN T+ T+ Y
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV-KGLHPNAVTYCTIIDGY 707
Query: 293 IKMGQVEKAEESLRRVESRITGRDRVPYHYL-LSLYGSVGKKEEVYRVWNLYRSVFPGV- 350
K G + +A R+ + + VP ++ +L + +V R ++ + G
Sbjct: 708 CKSGDLAEA----FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCA 763
Query: 351 -TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD----PR--IANLMMSWYVKEGNF 403
+ ++A+I+ + + G E ++ + S+D P N+M+ + KEGN
Sbjct: 764 SSTAPFNALINWVFKFGKTELKTEVLNRLMD--GSFDRFGKPNDVTYNIMIDYLCKEGNL 821
Query: 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAA 451
+ A+ F+ + P ++ +L G+ + R E A AA
Sbjct: 822 EAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAA 869
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 120/268 (44%), Gaps = 11/268 (4%)
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
YG ++ + A ++ +M G + + Y ++ +++ + + ++ EMK
Sbjct: 420 YGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMK 479
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
E+GI D++ YN + ++ F + V+ + PN T+ + YI+ +
Sbjct: 480 EQGIAPDIFCYNSLIIGLSKAKRMDEARS-FLVEMVENGLKPNAFTYGAFISGYIEASEF 538
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS-VFPGVTNLG--- 354
A++ ++ + ++V L++ Y KK +V + YRS V G+ LG
Sbjct: 539 ASADKYVKEMRECGVLPNKVLCTGLINEY---CKKGKVIEACSAYRSMVDQGI--LGDAK 593
Query: 355 -YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
Y +++ L + ++ E+IF E + D ++++ + K GN KA + F+ +
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEA 441
+EEG PN + L G R I +A
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKA 681
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 115/266 (43%), Gaps = 11/266 (4%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
+Y LL + R+ A+ L+D+M KG +++ Y ++ Y K + E + EM
Sbjct: 664 IYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM 723
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
K KG+ D + Y + C E+ +F K K + F+ + K G+
Sbjct: 724 KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK--KGCASSTAPFNALINWVFKFGK 781
Query: 298 VEKAEESLRRVES----RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL 353
E E L R+ R + V Y+ ++ G E +++ ++ T +
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVI 841
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA-----EA 408
Y ++++ ++G M +F+E ++ D + +++++ ++KEG KA +
Sbjct: 842 TYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQM 901
Query: 409 FFNSIIEEGGKPNSTSWETLAEGHIR 434
F + +++G K + ++ L G +
Sbjct: 902 FAKNAVDDGCKLSISTCRALLSGFAK 927
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 120/300 (40%), Gaps = 7/300 (2%)
Query: 198 LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257
L + M KG Y+V++ KIK ++ +S++ EM G+ LD ++Y++ +
Sbjct: 264 LKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLL 323
Query: 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR 317
+ + +G+ M V +N + + K G +EKA+ + +
Sbjct: 324 KGRNADAAKGLVHEM-VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQA 382
Query: 318 VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377
Y L+ Y + Y + + ++ Y ++ + GD++G I +E
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKE 442
Query: 378 WLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437
++ + I ++ +++ F A + E+G P+ + +L G + +R
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502
Query: 438 ILEALSCLKGAFAAEGAKS-WRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496
+ EA S F E ++ +P F E S+ S + +V +R+ G K
Sbjct: 503 MDEARS-----FLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/251 (17%), Positives = 105/251 (41%), Gaps = 9/251 (3%)
Query: 195 AELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254
A+ L D M G + Y ++ Y + K + ++ EMK++ I + Y+Y +
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425
Query: 255 SCGSQGSTEKMEGVFELMK--VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI 312
S G ++G + ++K + PN ++T+ +++ + A L+ ++ +
Sbjct: 426 GMCSSGD---LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482
Query: 313 TGRDRVPYHYLLSLYGSVGKKEEV--YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370
D Y+ L+ + +E + V + + P Y A IS +
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNA--FTYGAFISGYIEASEFAS 540
Query: 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430
+K +E + + +++ Y K+G +A + + S++++G ++ ++ L
Sbjct: 541 ADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMN 600
Query: 431 GHIRERRILEA 441
G + ++ +A
Sbjct: 601 GLFKNDKVDDA 611
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/305 (18%), Positives = 118/305 (38%), Gaps = 40/305 (13%)
Query: 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVS 235
+ Y L++ + + +A+ L+ +M G ++ + Y++++ +K + D + +V
Sbjct: 277 KYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVH 336
Query: 236 EMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM 295
EM GI + Y Y+ + +G EK + +F+ M + + P ++++ Y +
Sbjct: 337 EMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM-IASGLIPQAQAYASLIEGYCRE 395
Query: 296 GQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNL 353
V + E L ++ R Y ++ S G + Y + + P V
Sbjct: 396 KNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVI- 454
Query: 354 GYHAMISSL---ARIGD-----------------------IEGMEKI--FEEWLS----- 380
Y +I + +R GD I G+ K +E S
Sbjct: 455 -YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513
Query: 381 VKSSYDPR--IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438
V++ P +S Y++ F A+ + + E G PN L + ++ ++
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573
Query: 439 LEALS 443
+EA S
Sbjct: 574 IEACS 578
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 120/266 (45%), Gaps = 7/266 (2%)
Query: 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239
G+LLN + + A L+D M G+ + + YN ++ K ++ + + M++
Sbjct: 153 GSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEK 212
Query: 240 KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299
KGIR D +YN +S + G + M V + ++PN F+ + ++K G +
Sbjct: 213 KGIRADAVTYNTLISGLSNSGRWTDAARLLRDM-VKRKIDPNVIFFTALIDTFVKEGNLL 271
Query: 300 KAEESLRRVESRITGRDRVPYHYLLS---LYGSVGKKEEVYRVWNLYRSVFPGVTNLGYH 356
+A + + R + Y+ L++ ++G +G + ++ + + + FP V Y+
Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM-VSKGCFPDVVT--YN 328
Query: 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416
+I+ + +E K+F E D N ++ Y + G + A+ FN +++
Sbjct: 329 TLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDC 388
Query: 417 GGKPNSTSWETLAEGHIRERRILEAL 442
G P+ ++ L + +I +AL
Sbjct: 389 GVSPDIVTYNILLDCLCNNGKIEKAL 414
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 122/298 (40%), Gaps = 52/298 (17%)
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAED------- 164
V+ L K R +ALEV+ M +G R +DA LI+ + D
Sbjct: 190 VINGLCKNRDLNNALEVFYCMEKKGIR-----ADAVTYNTLISGLSNSGRWTDAARLLRD 244
Query: 165 -----------FFLSLPDT-------LKDRRVY---------------GALLNAYVRARM 191
FF +L DT L+ R +Y +L+N +
Sbjct: 245 MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 304
Query: 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNI 251
G+A+ + D M KG + YN ++T + K K ++ + EM +G+ D ++YN
Sbjct: 305 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364
Query: 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR 311
+ G + VF M VD V+P+ T++ + G++EKA + ++
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRM-VDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS 423
Query: 312 ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF-PGV--TNLGYHAMISSLARIG 366
D + Y+ ++ + + +++ W L+RS+ GV + Y MIS L R G
Sbjct: 424 EMDVDIITYNIIIQ---GLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 478
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 114/263 (43%), Gaps = 5/263 (1%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D Y L++ + +A L+ M + + + + ++ ++K E ++
Sbjct: 218 DAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLY 277
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
EM + + +V++YN ++ G + +F+LM V K P+ T++T+ T + K
Sbjct: 278 KEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM-VSKGCFPDVVTYNTLITGFCK 336
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-- 352
+VE + + + D Y+ L+ Y GK +V+N R V GV+
Sbjct: 337 SKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN--RMVDCGVSPDI 394
Query: 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNS 412
+ Y+ ++ L G IE + E+ + D N+++ + +A F S
Sbjct: 395 VTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRS 454
Query: 413 IIEEGGKPNSTSWETLAEGHIRE 435
+ +G KP++ ++ T+ G R+
Sbjct: 455 LTRKGVKPDAIAYITMISGLCRK 477
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D Y L++ Y +A A+ + ++M D G + + YN+++ + ++ MV
Sbjct: 358 DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMV 417
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQG--STEKMEGVFELMK--VDKAVNPNWTTFSTMAT 290
++++ + +D+ +YNI + QG T+K++ + L + K V P+ + TM +
Sbjct: 418 EDLQKSEMDVDIITYNIII-----QGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 472
Query: 291 MYIKMGQVEKAEESLRRVE 309
+ G +A++ RR++
Sbjct: 473 GLCRKGLQREADKLCRRMK 491
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 142/326 (43%), Gaps = 9/326 (2%)
Query: 124 HALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV--YGA 181
HA+++ D M +RG + + + ++ I K + A F +P + V +
Sbjct: 257 HAMKLLDEMRDRGCTPDVVTYN--VLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 182 LLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKG 241
+L + +AE L+ M KG++ + +N+++ + ++ +M + G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 242 IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK--VDKAVNPNWTTFSTMATMYIKMGQVE 299
+ + SYN L + +KM+ E ++ V + P+ T++TM T K G+VE
Sbjct: 375 CQPNSLSYNPLLHGFCKE---KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVE 431
Query: 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359
A E L ++ S+ + Y+ ++ GK + ++ + R+ + Y +++
Sbjct: 432 DAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLV 491
Query: 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
L+R G ++ K F E+ + + N +M K D+A F +I G K
Sbjct: 492 GGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCK 551
Query: 420 PNSTSWETLAEGHIRERRILEALSCL 445
PN TS+ L EG E EAL L
Sbjct: 552 PNETSYTILIEGLAYEGMAKEALELL 577
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 125/307 (40%), Gaps = 36/307 (11%)
Query: 171 DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEV 230
D D Y L+ A R G+A L+D+MRD+G + YNV++ K DE
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Query: 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMAT 290
+++M G + +V ++NI L S S G E + M + K +P+ TF+ +
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM-LRKGFSPSVVTFNILIN 352
Query: 291 MYIKMG-----------------------------------QVEKAEESLRRVESRITGR 315
+ G ++++A E L R+ SR
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412
Query: 316 DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIF 375
D V Y+ +L+ GK E+ + N S + Y+ +I LA+ G K+
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLL 472
Query: 376 EEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435
+E + D + ++ +EG D+A FF+ G +PN+ ++ ++ G +
Sbjct: 473 DEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS 532
Query: 436 RRILEAL 442
R+ A+
Sbjct: 533 RQTDRAI 539
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 114/264 (43%), Gaps = 8/264 (3%)
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
L+ + R A +++ + G + YNVM++ Y K E + S++ M
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS-- 199
Query: 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK 300
+ DV +YN L S G ++ V + M + + P+ T++ + + V
Sbjct: 200 -VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM-LQRDCYPDVITYTILIEATCRDSGVGH 257
Query: 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360
A + L + R D V Y+ L++ G+ +E + N S + ++ ++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIA--NLMMSWYVKEGNFDKAEAFFNSIIEEGG 418
S+ G EK+ + L + + P + N+++++ ++G +A + + G
Sbjct: 318 SMCSTGRWMDAEKLLADML--RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGC 375
Query: 419 KPNSTSWETLAEGHIRERRILEAL 442
+PNS S+ L G +E+++ A+
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAI 399
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/304 (16%), Positives = 115/304 (37%), Gaps = 38/304 (12%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D Y +L + + A ++D+M + + Y +++ + ++
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK--------------------- 273
EM+++G DV +YN+ ++ +G ++ M
Sbjct: 263 DEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322
Query: 274 -------------VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY 320
+ K +P+ TF+ + + G + +A + L ++ + + Y
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSY 382
Query: 321 HYLLSLYGSVGKKEEV--YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEW 378
+ LL + K + Y + R +P + Y+ M+++L + G +E +I +
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVT--YNTMLTALCKDGKVEDAVEILNQL 440
Query: 379 LSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438
S S N ++ K G KA + + + KP++ ++ +L G RE ++
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500
Query: 439 LEAL 442
EA+
Sbjct: 501 DEAI 504
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 151/348 (43%), Gaps = 16/348 (4%)
Query: 93 VLNDWEKGGRS--LTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ- 149
++N+ K S +T + +V++ L K +Y A++ + M + + + A+
Sbjct: 188 LVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEME---KSYGVKTDTIAMNS 244
Query: 150 -LDLIAKVHGVASAEDFFLSLPDTLK-DRRVYGALLNAYVRARMRGNAELLIDKMRDKGY 207
+D + K + + A + FL L DT+K D R + L++ + +AR +A ++D M+ +
Sbjct: 245 LMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEF 304
Query: 208 AVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267
+ Y + Y K ++ V M+ EM+E G +V +Y I + S G + G
Sbjct: 305 TPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALG 364
Query: 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327
V+E MK D V P+ +S++ + K G+ + A E + ++ RD + Y+ ++S
Sbjct: 365 VYEKMKEDGCV-PDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAA 423
Query: 328 GSVGKKEEVYRVWNLY-----RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVK 382
+ E R+ S P V Y ++ ++ + + +
Sbjct: 424 LHHSRDEMALRLLKRMEDEEGESCSPNVET--YAPLLKMCCHKKKMKLLGILLHHMVKND 481
Query: 383 SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430
S D L++ G ++A FF + +G P ++ + L +
Sbjct: 482 VSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVD 529
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 2/224 (0%)
Query: 230 VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289
V++ + K G++ D + N + + + S E VF +K+ + P+ TF+ +
Sbjct: 223 VDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVF--LKLFDTIKPDARTFNILI 280
Query: 290 TMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG 349
+ K + + A + ++ D V Y + Y G V + R
Sbjct: 281 HGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCN 340
Query: 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAF 409
+ Y ++ SL + + ++E+ D + + ++ K G F A
Sbjct: 341 PNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEI 400
Query: 410 FNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG 453
F + +G + + + T+ + R AL LK EG
Sbjct: 401 FEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEG 444
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/386 (19%), Positives = 159/386 (41%), Gaps = 23/386 (5%)
Query: 53 SMSQIHSYGTVDFERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRV 112
++ + HS + + P +AI NP L ++ D+ + S + R
Sbjct: 64 TVEKFHSIIKDHYRKNPTSPNDAIL-------NPSLTLHALSLDFSQIETSQVSPSVVRC 116
Query: 113 VKE----LRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168
V E +R +L ++W +R + S +DL KV D
Sbjct: 117 VIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQF----DLAWH 172
Query: 169 LPDTLKDRRV------YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM 222
L D +K R V + L+ YVRA + A ++M D G + ++++++
Sbjct: 173 LIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLS 232
Query: 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW 282
+ + E +S +K++ DV Y + G + E VF+ MK+ + PN
Sbjct: 233 RKRRASEAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKL-AGIEPNV 290
Query: 283 TTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNL 342
T+S + + GQ+ +A + + + + ++ L+ ++ G+ E+V +V+N
Sbjct: 291 YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQ 350
Query: 343 YRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN 402
+ + + Y+ +I + R ++E K+ + K + N + + K+ +
Sbjct: 351 MKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRD 410
Query: 403 FDKAEAFFNSIIEEGGKPNSTSWETL 428
+ A ++ ++E +PN+ ++ L
Sbjct: 411 VNGAHRMYSKMMEAKCEPNTVTYNIL 436
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 105/236 (44%), Gaps = 8/236 (3%)
Query: 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELM 272
PYN M+ L K++++D ++ MK + + + + ++ I + G + F M
Sbjct: 153 PYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRM 212
Query: 273 KVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY---GS 329
+ D P+ FS + + + + +A+ ++ R D + Y L+ + G
Sbjct: 213 E-DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEP-DVIVYTNLVRGWCRAGE 270
Query: 330 VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRI 389
+ + E+V++ L + P V Y +I +L R G I +F + L + +
Sbjct: 271 ISEAEKVFKEMKL-AGIEPNV--YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAIT 327
Query: 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCL 445
N +M +VK G +K +N + + G +P++ ++ L E H R+ + A+ L
Sbjct: 328 FNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVL 383
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 147 AIQLDLIAKVHGVASAEDFFLSLPDTLK------DRRVYGALLNAYVRARMRGNAELLID 200
AI + + +VH A + L + + +K D Y L+ A+ R NA +++
Sbjct: 325 AITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLN 384
Query: 201 KMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG 260
M K V++ +N + K ++ + M S+M E + +YNI +
Sbjct: 385 TMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSK 444
Query: 261 STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
ST+ + + + M DK V PN T+ + TM+ MG
Sbjct: 445 STDMVLKMKKEMD-DKEVEPNVNTYRLLVTMFCGMGH 480
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/338 (17%), Positives = 132/338 (39%), Gaps = 56/338 (16%)
Query: 88 LGSASV--LNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASD 145
L S +V N E G K V+ L + RR A +D + +R E D
Sbjct: 201 LASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE------PD 254
Query: 146 AAIQLDLI---AKVHGVASAEDFF--LSLPDTLKDRRVYGALLNAYVRARMRGNAELLID 200
+ +L+ + ++ AE F + L + Y +++A R A +
Sbjct: 255 VIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFA 314
Query: 201 KMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS----- 255
M D G A +++ +N +M +++K ++V + ++MK+ G D +YN + +
Sbjct: 315 DMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDE 374
Query: 256 ----------------CGSQGSTEKMEGVFELMKVDKAVN---------------PNWTT 284
C ST +F ++ + VN PN T
Sbjct: 375 NLENAVKVLNTMIKKKCEVNAST--FNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVT 432
Query: 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY- 343
++ + M++ + + + ++ + + Y L++++ +G Y+++
Sbjct: 433 YNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMV 492
Query: 344 --RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379
+ + P ++ Y +++ L R G ++ E++ E+ +
Sbjct: 493 EEKCLTPSLS--LYEMVLAQLRRAGQLKKHEELVEKMI 528
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 123/274 (44%), Gaps = 13/274 (4%)
Query: 175 DRRVYGALLNAYVRARMRGNAEL---LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
D YG ++N + RG+ +L L+ KM + YN ++ K K D+
Sbjct: 222 DLVTYGTVVNGLCK---RGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDAL 278
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
++ +EM KGIR DV++Y+ +S + G + M +++ +NPN TFS +
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDA 337
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY--RSVFPG 349
++K G++ +AE+ + R D Y L++ + + +E ++ L + FP
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Query: 350 VTNLGYHAMISSLARIGDI-EGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408
V Y +I + + EGME +F E + ++ + + + D A+
Sbjct: 398 VVT--YSTLIKGFCKAKRVEEGME-LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 454
Query: 409 FFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
F ++ G PN ++ L +G + ++ +A+
Sbjct: 455 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAM 488
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 124/272 (45%), Gaps = 9/272 (3%)
Query: 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234
D +LLN Y ++ +A L+D+M + GY + + ++ + E ++V
Sbjct: 152 DIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALV 211
Query: 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294
+M ++G + D+ +Y ++ +G + + + M+ K + + ++T+ K
Sbjct: 212 DQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK-IEADVVIYNTIIDGLCK 270
Query: 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTN 352
++ A ++++ D Y L+S + G+ + R+ + + R + P V
Sbjct: 271 YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 330
Query: 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANL--MMSWYVKEGNFDKAEAFF 410
+ A+I + + G + EK+++E +K S DP I +++ + D+A+ F
Sbjct: 331 --FSALIDAFVKEGKLVEAEKLYDEM--IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 386
Query: 411 NSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
+I + PN ++ TL +G + +R+ E +
Sbjct: 387 ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGM 418
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 146/357 (40%), Gaps = 40/357 (11%)
Query: 92 SVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLD 151
S+L EKG ++ L K++ AL ++ M+N+G R
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIR------------- 290
Query: 152 LIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHS 211
PD Y +L++ +A L+ M ++ +
Sbjct: 291 ------------------PDVF----TYSSLISCLCNYGRWSDASRLLSDMIERKINPNV 328
Query: 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271
+ ++ ++ ++K + E E + EM ++ I D+++Y+ ++ ++ + +FEL
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 388
Query: 272 MKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVG 331
M + K PN T+ST+ + K +VE+ E R + R + V Y L+ +
Sbjct: 389 M-ISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 447
Query: 332 KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA- 390
+ V+ SV L Y+ ++ L + G + +FE +L +S+ +P I
Sbjct: 448 DCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFE-YLQ-RSTMEPDIYT 505
Query: 391 -NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446
N+M+ K G + F ++ +G PN ++ T+ G R+ EA S LK
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLK 562
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 101/236 (42%), Gaps = 2/236 (0%)
Query: 171 DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEV 230
D + Y L+ + +A+ L +M +G +++ Y ++ + + ++ D
Sbjct: 393 DCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 452
Query: 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMAT 290
+ + +M G+ ++ +YNI L G K VFE ++ + P+ T++ M
Sbjct: 453 QMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ-RSTMEPDIYTYNIMIE 511
Query: 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV 350
K G+VE E + + + + Y+ ++S + G KEE + + P
Sbjct: 512 GMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLP 571
Query: 351 TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406
+ Y+ +I + R GD E ++ +E S + D L+ + + +G DK+
Sbjct: 572 NSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM-LHDGRLDKS 626
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 97/218 (44%), Gaps = 7/218 (3%)
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS-CGSQGSTEKMEGVFELM 272
+N +++ K+ +++ V S+ +M+ GI D+Y+Y+I+++ C + + + ++M
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145
Query: 273 KVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL-SLYGSVG 331
K+ P+ T S++ Y ++ A + ++ D + L+ L+
Sbjct: 146 KL--GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNK 203
Query: 332 KKEEVYRVWNLY-RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
E V V + R P + Y +++ L + GDI+ + ++ K D I
Sbjct: 204 ASEAVALVDQMVQRGCQPDLVT--YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 261
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428
N ++ K + D A F + +G +P+ ++ +L
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL 299
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 167/376 (44%), Gaps = 22/376 (5%)
Query: 70 MIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVY 129
++ + A+ L P L + ++LN EKG V+ L K+R AL ++
Sbjct: 205 LVTYGAVINGLCKRGEPDL-ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLF 263
Query: 130 DWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRV------YGALL 183
M+N+G R D LI+ + D L D L +R++ + +L+
Sbjct: 264 TEMDNKGIR-----PDVFTYSSLISCLCNYGRWSDASRLLSDML-ERKINPNVVTFNSLI 317
Query: 184 NAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIR 243
+A+ + AE L D+M + + + YN ++ + DE + + + M K
Sbjct: 318 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL 377
Query: 244 LDVYSYNIWLSS-CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302
DV +YN ++ C ++ + ME ++ + + + N T++T+ + + + A+
Sbjct: 378 PDVVTYNTLINGFCKAKKVVDGMELFRDMSR--RGLVGNTVTYTTLIHGFFQASDCDNAQ 435
Query: 303 ESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN-LYRSVF-PGVTNLGYHAMIS 360
+++ S + + Y+ LL GK E+ V+ L +S P + Y+ M
Sbjct: 436 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT--YNIMSE 493
Query: 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIA-NLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
+ + G +E +F LS+K IA N M+S + K+G ++A F + E+G
Sbjct: 494 GMCKAGKVEDGWDLFCS-LSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPL 552
Query: 420 PNSTSWETLAEGHIRE 435
P+S ++ TL H+R+
Sbjct: 553 PDSGTYNTLIRAHLRD 568
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 130/274 (47%), Gaps = 13/274 (4%)
Query: 175 DRRVYGALLNAYVRARMRGNAEL---LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231
D YGA++N + RG +L L++KM + Y+ ++ K + D+
Sbjct: 204 DLVTYGAVINGLCK---RGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260
Query: 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291
++ +EM KGIR DV++Y+ +S + G + M +++ +NPN TF+++
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM-LERKINPNVVTFNSLIDA 319
Query: 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS--VFPG 349
+ K G++ +AE+ + R + V Y+ L++ + + +E +++ L S P
Sbjct: 320 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379
Query: 350 VTNLGYHAMISSLARIGD-IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408
V Y+ +I+ + ++GME +F + + ++ + + + D A+
Sbjct: 380 VVT--YNTLINGFCKAKKVVDGME-LFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQM 436
Query: 409 FFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442
F ++ +G PN ++ TL +G + ++ +A+
Sbjct: 437 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 470
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 122/266 (45%), Gaps = 9/266 (3%)
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
+LLN + A L+D+M + GY ++ + ++ + + E ++V M K
Sbjct: 140 SLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK 199
Query: 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK 300
G + D+ +Y ++ +G + + M+ K + + +ST+ K V+
Sbjct: 200 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGK-IEADVVIYSTVIDSLCKYRHVDD 258
Query: 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGYHAM 358
A ++++ D Y L+S + G+ + R+ + L R + P V ++++
Sbjct: 259 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT--FNSL 316
Query: 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA--NLMMSWYVKEGNFDKAEAFFNSIIEE 416
I + A+ G + EK+F+E ++ S DP I N +++ + D+A+ F ++ +
Sbjct: 317 IDAFAKEGKLIEAEKLFDEM--IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374
Query: 417 GGKPNSTSWETLAEGHIRERRILEAL 442
P+ ++ TL G + +++++ +
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGM 400
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 2/236 (0%)
Query: 171 DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEV 230
D L D Y L+N + +A+ + L M +G +++ Y ++ + + + D
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434
Query: 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMAT 290
+ + +M G+ ++ +YN L G EK VFE ++ K + P+ T++ M+
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK-MEPDIYTYNIMSE 493
Query: 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV 350
K G+VE + + + D + Y+ ++S + G KEE Y ++ + P
Sbjct: 494 GMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLP 553
Query: 351 TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406
+ Y+ +I + R GD ++ +E S + + D L+ + +G DK
Sbjct: 554 DSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDM-LHDGRLDKG 608
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 18/261 (6%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRD-KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSE 236
+Y ALL AY R+ + +A ++DKM+ Y+ ++ + ++D V+S+ E
Sbjct: 161 LYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKE 220
Query: 237 MKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296
M E+ I + + NI LS G G ++ME V M V A P+ T + + +++ MG
Sbjct: 221 MDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMG 280
Query: 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSV-FPGVTNLGY 355
+++ E + + + ++ L+ YG +++ V R + FP T+ Y
Sbjct: 281 KIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTST-Y 339
Query: 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA--------- 406
+ +I + A +GD + ME F++ S D + +++ Y G F K
Sbjct: 340 NNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAK 399
Query: 407 ------EAFFNSIIEEGGKPN 421
AF+N++I K +
Sbjct: 400 FEIPENTAFYNAVISACAKAD 420
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 49/280 (17%)
Query: 168 SLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227
S P D Y LL A V A + L +M ++ +++ N++++ Y ++ +
Sbjct: 187 SFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRF 246
Query: 228 DEVESMVSEM-KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS 286
D++E ++S+M + DV++ NI LS G+ G + ME +E + + + P TF+
Sbjct: 247 DQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFR-NFGIEPETRTFN 305
Query: 287 TM------ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVW 340
+ MY KM V E +R++E T Y+ ++ + VG + + +
Sbjct: 306 ILIGSYGKKRMYDKMSSV---MEYMRKLEFPWTTS---TYNNIIEAFADVGDAKNMELTF 359
Query: 341 NLYRS------------VFPGVTNLG-----------------------YHAMISSLARI 365
+ RS + G N G Y+A+IS+ A+
Sbjct: 360 DQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKA 419
Query: 366 GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405
D+ ME+++ + D R +M+ Y KEG DK
Sbjct: 420 DDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDK 459
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 97/212 (45%), Gaps = 6/212 (2%)
Query: 198 LIDKMRDKG-YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256
+ D +R++ Y Y ++ L K + + + + EM E+G+ V Y L++
Sbjct: 110 VFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAY 169
Query: 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD 316
+ + + MK P+ T+ST+ + Q + + + ++ R+ +
Sbjct: 170 TRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 229
Query: 317 RVPYHYLLSLYGSVGKKEEVYRVWN---LYRSVFPGVTNLGYHAMISSLARIGDIEGMEK 373
V + +LS YG VG+ +++ +V + + + P V + + ++S +G I+ ME
Sbjct: 230 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTM--NIILSVFGNMGKIDMMES 287
Query: 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405
+E++ + + R N+++ Y K+ +DK
Sbjct: 288 WYEKFRNFGIEPETRTFNILIGSYGKKRMYDK 319
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/415 (22%), Positives = 170/415 (40%), Gaps = 50/415 (12%)
Query: 63 VDFERRP-MIKWNAIFRKLSLMDNPQLGSASVLND-WEKGGRSLTKWELCRVVKELRKFR 120
V+ +P +I NA+ L L N ++ A +L D + G + V+K + K
Sbjct: 169 VEMGHKPTLITLNALVNGLCL--NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSG 226
Query: 121 RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFF--LSLPDTLKDRRV 178
+ A+E+ M R + +L A +I +D + K + +A + F + + D +
Sbjct: 227 QTALAMELLRKMEER--KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIII 284
Query: 179 YGALLNAYVRA-RMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y L+ + A R A+LL D ++ K + ++ ++ ++K + E E + EM
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRK-ITPDVVAFSALIDCFVKEGKLREAEELHKEM 343
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
++GI D +Y + + +K + +LM V K PN TF+ + Y K
Sbjct: 344 IQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM-VSKGCGPNIRTFNILINGYCKANL 402
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGY 355
++ E R++ R D V Y+ L+ + +GK E ++ + R V P + + Y
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVS--Y 460
Query: 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANL----------------------- 392
++ L G+ E +IFE+ K D I N+
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520
Query: 393 ------------MMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435
M+ K+G+ +A+ F + E+G PN ++ L H+ E
Sbjct: 521 KGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGE 575
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 1/260 (0%)
Query: 182 LLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKG 241
++N R R A + K+ GY ++ ++ ++ E +V M E G
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172
Query: 242 IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKA 301
+ + + N ++ G + + M V+ PN T+ + + K GQ A
Sbjct: 173 HKPTLITLNALVNGLCLNGKVSDAVLLIDRM-VETGFQPNEVTYGPVLKVMCKSGQTALA 231
Query: 302 EESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISS 361
E LR++E R D V Y ++ G + + ++N + Y +I
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291
Query: 362 LARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN 421
G + K+ + + K + D + ++ +VKEG +AE +I+ G P+
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPD 351
Query: 422 STSWETLAEGHIRERRILEA 441
+ ++ +L +G +E ++ +A
Sbjct: 352 TVTYTSLIDGFCKENQLDKA 371
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/262 (19%), Positives = 105/262 (40%), Gaps = 36/262 (13%)
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
AL+N +A LLID+M + G+ + + Y ++ + K + ++ +M+E+
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 241
Query: 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK 300
I+LD Y+I + GS + +F M++ K + ++T+ + G+ +
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI-KGFKADIIIYTTLIRGFCYAGRWDD 300
Query: 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360
+ LR + + R + P V + + A+I
Sbjct: 301 GAKLLRDM---------------------------------IKRKITPDV--VAFSALID 325
Query: 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP 420
+ G + E++ +E + S D ++ + KE DKA + ++ +G P
Sbjct: 326 CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP 385
Query: 421 NSTSWETLAEGHIRERRILEAL 442
N ++ L G+ + I + L
Sbjct: 386 NIRTFNILINGYCKANLIDDGL 407
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 9/224 (4%)
Query: 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271
+ ++ + ++ + K+YD V + +M+ KGI ++Y+ +I ++ C K+ F
Sbjct: 73 IDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCC---CRCRKLSLAFSA 129
Query: 272 MK--VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329
M + P+ TFST+ G+V +A E + R+ + + L++
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189
Query: 330 VGKKEEVYRVWNLYRSVFPGV--TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP 387
GK + V + R V G + Y ++ + + G ++ + K D
Sbjct: 190 NGKVSDA--VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDA 247
Query: 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431
++++ K+G+ D A FN + +G K + + TL G
Sbjct: 248 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 156 VHGVASAE------DFFLSLP--DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGY 207
+HG+ +A D F SLP D + Y ++ + A+LL KM + G+
Sbjct: 499 IHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGH 558
Query: 208 AVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD 245
+ + YN+++ ++ + + ++ E+K G +D
Sbjct: 559 SPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVD 596
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 150/338 (44%), Gaps = 12/338 (3%)
Query: 116 LRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSL---PDT 172
LR+F+ + HA E + ++N G FR+ A A ++ ++ A+A FF L P
Sbjct: 304 LRRFK-WGHAAE--EALHNFG--FRMDAYQAN---QVLKQMDNYANALGFFYWLKRQPGF 355
Query: 173 LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVES 232
D Y ++ RA+ G L+D+M G +++ YN ++ Y + E +
Sbjct: 356 KHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMN 415
Query: 233 MVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMY 292
+ ++M+E G D +Y + G + +++ M+ + ++P+ T+S +
Sbjct: 416 VFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ-EAGLSPDTFTYSVIINCL 474
Query: 293 IKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN 352
K G + A + + + V ++ +++L+ E +++ ++
Sbjct: 475 GKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 534
Query: 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNS 412
+ Y ++ L G +E E +F E D + L++ + K GN DKA ++ +
Sbjct: 535 VTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQA 594
Query: 413 IIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA 450
+++ G +PN + +L +R R+ EA + L+ A
Sbjct: 595 MLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLA 632
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 24/259 (9%)
Query: 111 RVVKELRKFRRYKHALEVYDWMNNRG-ERFRLSASDAAIQLDLIAKVHGVASAEDFFLSL 169
R++ + K A+ V++ M G E R++ +D+ AK + A D + +
Sbjct: 399 RLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTY---CTLIDIHAKAGFLDIAMDMYQRM 455
Query: 170 ------PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223
PDT Y ++N +A A L +M +G + + +N+M+ L+ K
Sbjct: 456 QEAGLSPDTF----TYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAK 511
Query: 224 IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWT 283
+ Y+ + +M+ G + D +Y+I + G G E+ EGVF M+ V P+
Sbjct: 512 ARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEP 570
Query: 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY-HYLLSLYGSVGKKEEVYRVWNL 342
+ + ++ K G V+KA + + + + R VP + LLS + V + E Y NL
Sbjct: 571 VYGLLVDLWGKAGNVDKAWQWYQAM-LQAGLRPNVPTCNSLLSTFLRVHRMSEAY---NL 626
Query: 343 YRSVFPGVTNLGYHAMISS 361
+S+ LG H + +
Sbjct: 627 LQSMLA----LGLHPSLQT 641
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 4/159 (2%)
Query: 118 KFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSL--PDTLKD 175
K R Y+ AL++Y M N G F+ +I ++++ + AE F + + + D
Sbjct: 511 KARNYETALKLYRDMQNAG--FQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPD 568
Query: 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVS 235
VYG L++ + +A A M G + N +++ ++++ E +++
Sbjct: 569 EPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQ 628
Query: 236 EMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKV 274
M G+ + +Y + LS C S M +LM V
Sbjct: 629 SMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCGQLMAV 667
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/468 (20%), Positives = 194/468 (41%), Gaps = 51/468 (10%)
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDF-----F 166
V++ + + + ALE+ + M G + L I +D K + A F F
Sbjct: 183 VIRGFCEGKELEKALELANEMKGSGCSWSLVT--WGILIDAFCKAGKMDEAMGFLKEMKF 240
Query: 167 LSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE 226
+ L D VY +L+ + + L D++ ++G + ++ YN ++ + K+ +
Sbjct: 241 MGLE---ADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQ 297
Query: 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS 286
E + M E+G+R +VY+Y + G T++ + LM ++K PN T++
Sbjct: 298 LKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM-IEKDEEPNAVTYN 356
Query: 287 TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY--R 344
+ K G V A E + ++ R T D + Y+ LL + G +E ++ L
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKD 416
Query: 345 SVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404
S + + Y+A+I L + + I++ + + D N++++ +K G+ +
Sbjct: 417 SSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVN 476
Query: 405 KAEAFFNSIIEEGGKPNSTSWETL------------AEGHIRERRILEA------LSCLK 446
KA + I + NS ++ + A+G + + R+ E +CL
Sbjct: 477 KAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLL 536
Query: 447 GAFAAEGA--KSWR-----------PKPVNVINFFKACEEESDMGSKEAFVALLRQPG-- 491
+ EG+ ++WR P V+ + D+ S E+ + + + G
Sbjct: 537 SSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLS 596
Query: 492 -----YRKEKDYMSLIGLTDEAVAENNKKNDEDSDEDSEMLLSQLQFA 534
Y K + +G DEA++ +K D + D+ + S L++
Sbjct: 597 PDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYC 644
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 131/303 (43%), Gaps = 23/303 (7%)
Query: 170 PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229
DT + LL YV+ R G A ++ M +G+A + +N+++ + E +
Sbjct: 101 TDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGK 160
Query: 230 VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE--KMEGVFELMKVDKAVNPNWT--TF 285
S++ EM+ + DV+SYN + +G E ++E EL K +W+ T+
Sbjct: 161 AVSLLREMRRNSLMPDVFSYNTVI-----RGFCEGKELEKALELANEMKGSGCSWSLVTW 215
Query: 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LY 343
+ + K G++++A L+ ++ D V Y L+ + G+ + +++ L
Sbjct: 216 GILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLE 275
Query: 344 RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANL--MMSWYVKEG 401
R P + Y+ +I ++G ++ +IFE ++ P + ++ G
Sbjct: 276 RGDSP--CAITYNTLIRGFCKLGQLKEASEIFE--FMIERGVRPNVYTYTGLIDGLCGVG 331
Query: 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP 461
+A N +IE+ +PN+ ++ + ++ + +A+ E K R +P
Sbjct: 332 KTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE------IVELMKKRRTRP 385
Query: 462 VNV 464
N+
Sbjct: 386 DNI 388
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 168 SLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227
+ PD + + +++ ++A +AE L+ M G + Y+ ++ ++K+
Sbjct: 560 NFPDVVS----FNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYL 615
Query: 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM-EGVFELMKVDKAVNPNWTTFS 286
DE S +M + G D + + L C SQG T+K+ E V +L+ D ++ T +
Sbjct: 616 DEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTC-T 674
Query: 287 TMATMYIKMGQVEKAEESLRRVESR 311
M M ++ A+ LR + +
Sbjct: 675 VMDYMCNSSANMDLAKRLLRVTDDK 699
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 172/431 (39%), Gaps = 50/431 (11%)
Query: 85 NPQLGSASVLNDWEKGGRSLTKWEL--------CRVVKELRKFRRYKHALEVYDWMNNRG 136
N +G D + R + KW+L C + LR R Y A +VY + G
Sbjct: 175 NILIGFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQAYLRS-RDYSKAFDVYCEIRRGG 233
Query: 137 ERFRLSASDAAIQLDLIAKVHGVASA-EDFFLSLPDTLKDRRVYGALLNAYVRARMRGNA 195
+ + A + + LD +AK ED + +D Y ++ R A
Sbjct: 234 HKLDIFAYN--MLLDALAKDEKACQVFED--MKKRHCRRDEYTYTIMIRTMGRIGKCDEA 289
Query: 196 ELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS 255
L ++M +G ++ + YN +M + K K D+ + S M E G R + Y+Y++ L+
Sbjct: 290 VGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNL 349
Query: 256 CGSQGSTEKMEGVFELMK--------------------VDKA-----------VNPNWTT 284
++G +++GV E+ K V +A V +
Sbjct: 350 LVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDS 409
Query: 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYR 344
+ +M G+ +A E L ++ + D + Y+ + S G + + ++ ++ +
Sbjct: 410 YMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMK 469
Query: 345 SVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404
P Y+ +I+S R+G+++ IFEE D N +++ K G+ D
Sbjct: 470 KDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVD 529
Query: 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNV 464
+A F + E+G P+ ++ TL E + R+ A S F K +P V
Sbjct: 530 EAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYS----LFEEMLVKGCQPNIVTY 585
Query: 465 INFFKACEEES 475
N C E++
Sbjct: 586 -NILLDCLEKN 595
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 102/219 (46%), Gaps = 9/219 (4%)
Query: 153 IAKVHGVASAEDFFL---SLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAV 209
++K+ V+ A F S P +R Y ++L + A A ++ K+ +KG
Sbjct: 382 LSKLGHVSEAHRLFCDMWSFP-VKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVT 440
Query: 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVF 269
++ YN + + K+K+ + + +MK+ G D+++YNI ++S G G ++ +F
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIF 500
Query: 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329
E ++ P+ +++++ K G V++A + ++ + D V Y L+ +G
Sbjct: 501 EELERSDC-KPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGK 559
Query: 330 VGKKEEVYRVWN--LYRSVFPGVTNLGYHAMISSLARIG 366
+ E Y ++ L + P + Y+ ++ L + G
Sbjct: 560 TERVEMAYSLFEEMLVKGCQPNIVT--YNILLDCLEKNG 596
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/362 (19%), Positives = 155/362 (42%), Gaps = 22/362 (6%)
Query: 90 SASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ 149
+ V D +K ++ +++ + + + A+ +++ M G + + +Q
Sbjct: 254 ACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQ 313
Query: 150 LDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVR----ARMRGNAELLIDKMR 203
+ +AK V A F + +T + Y LLN V R+ G E+
Sbjct: 314 V--LAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEI------ 365
Query: 204 DKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS-CGSQGST 262
K Y + Y+ ++ K+ E + +M ++ + SY L S CG+ +
Sbjct: 366 SKRYMTQGI-YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTI 424
Query: 263 EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHY 322
E +E + ++ +K V + ++T+ + K+ Q+ + +++ D Y+
Sbjct: 425 EAIEMLSKIH--EKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNI 482
Query: 323 LLSLYGSVGKKEEVYRVWN-LYRS-VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380
L++ +G VG+ +E ++ L RS P + + Y+++I+ L + GD++ F+E
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDI--ISYNSLINCLGKNGDVDEAHVRFKEMQE 540
Query: 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440
+ D + +M + K + A + F ++ +G +PN ++ L + + R E
Sbjct: 541 KGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAE 600
Query: 441 AL 442
A+
Sbjct: 601 AV 602
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 10/205 (4%)
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFF--LSL 169
V L K ++ H ++++ M G + + I + +V V A + F L
Sbjct: 448 VFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYN--ILIASFGRVGEVDEAINIFEELER 505
Query: 170 PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229
D D Y +L+N + A + +M++KG + Y+ +M + K + +
Sbjct: 506 SDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEM 565
Query: 230 VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289
S+ EM KG + ++ +YNI L G T + ++ MK + + P+ T++ +
Sbjct: 566 AYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK-QQGLTPDSITYTVLE 624
Query: 290 TMYIKMGQVEKAEESLRRVESRITG 314
++ V + +RR ++ ITG
Sbjct: 625 ----RLQSVSHGKSRIRR-KNPITG 644
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 153/351 (43%), Gaps = 29/351 (8%)
Query: 105 TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAED 164
+K+ + ++ K LE+++ M + +R S + +D + K + AE
Sbjct: 178 SKFMYGKAIQAAVKLSDVGKGLELFNRMKH--DRIYPSVFIYNVLIDGLCKGKRMNDAEQ 235
Query: 165 FFLSLPDTLKDRRV------YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLP----Y 214
F D + RR+ Y L++ Y +A GN E K+R++ A H P +
Sbjct: 236 LF----DEMLARRLLPSLITYNTLIDGYCKA---GNPEKSF-KVRERMKADHIEPSLITF 287
Query: 215 NVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKV 274
N ++ K ++ E+++ EMK+ G D ++++I S E GV+E V
Sbjct: 288 NTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYE-TAV 346
Query: 275 DKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS----V 330
D V N T S + K G++EKAEE L R ++ + V Y+ ++ Y V
Sbjct: 347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLV 406
Query: 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
G + ++ + + + P +L Y+ +I +G++E EK + S
Sbjct: 407 GARMKIEAMEK--QGMKP--DHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETY 462
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441
N+++ Y ++ FDK + + G PN S+ TL + ++LEA
Sbjct: 463 NILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEA 513
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 126/298 (42%), Gaps = 7/298 (2%)
Query: 135 RGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSL--PDTLKDRRVYGALLNAYVRARMR 192
R E S+ + LD + K + FL++ D + +YG + A V+
Sbjct: 136 RNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDV 195
Query: 193 GNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIW 252
G L ++M+ YNV++ K K ++ E + EM + + + +YN
Sbjct: 196 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTL 255
Query: 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI 312
+ G+ EK V E MK D + P+ TF+T+ K G VE AE L+ ++
Sbjct: 256 IDGYCKAGNPEKSFKVRERMKADH-IEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG 314
Query: 313 TGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA--MISSLARIGDIEG 370
D + L Y S K E V+ +V GV Y ++++L + G IE
Sbjct: 315 FVPDAFTFSILFDGYSSNEKAEAALGVYE--TAVDSGVKMNAYTCSILLNALCKEGKIEK 372
Query: 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428
E+I ++ + I N M+ Y ++G+ A ++ ++G KP+ ++ L
Sbjct: 373 AEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCL 430
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 135/309 (43%), Gaps = 11/309 (3%)
Query: 125 ALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS--LPDTLKDRRVYGAL 182
AL VY+ + G +++A +I L+ + K + AE+ + + +Y +
Sbjct: 338 ALGVYETAVDSG--VKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTM 395
Query: 183 LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI 242
++ Y R A + I+ M +G L YN ++ + ++ E + E V++MK KG+
Sbjct: 396 IDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGV 455
Query: 243 RLDVYSYNIWLSSCGSQGSTEKMEGVFELMK--VDKAVNPNWTTFSTMATMYIKMGQVEK 300
V +YNI + G G + + F+++K D PN ++ T+ K ++ +
Sbjct: 456 SPSVETYNILI---GGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLE 512
Query: 301 AEESLRRVESR-ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359
A+ R +E R ++ + R+ Y+ L+ S GK E+ +R + + Y+ +I
Sbjct: 513 AQIVKRDMEDRGVSPKVRI-YNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLI 571
Query: 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419
L+ G + E + E D N ++S Y GN + A + + G K
Sbjct: 572 DGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIK 631
Query: 420 PNSTSWETL 428
P ++ L
Sbjct: 632 PTLKTYHLL 640
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237
Y L++ AE L+ ++ KG YN +++ Y ++ EM
Sbjct: 566 TYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEM 625
Query: 238 KEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297
K GI+ + +Y++ +S C +G E E +F M ++ P+ ++ + Y G
Sbjct: 626 KRSGIKPTLKTYHLLISLCTKEG-IELTERLFGEM----SLKPDLLVYNGVLHCYAVHGD 680
Query: 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336
+EKA +++ + G D+ Y+ L+ VGK EV
Sbjct: 681 MEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEV 719
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 152/340 (44%), Gaps = 29/340 (8%)
Query: 102 RSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVAS 161
+ L KW L V E+ ++ RY++ W N S D + + K+
Sbjct: 114 KQLKKWNL---VSEILEWLRYQN------WWN-------FSEIDFLMLITAYGKLGNFNG 157
Query: 162 AEDFF--LSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMT 219
AE LS + + Y AL+ +Y R NAE + +M+ G ++ Y +++
Sbjct: 158 AERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILK 217
Query: 220 LYM---KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK 276
++ K KE +EV + + K+ ++ D Y++ + G+ EK VF M V K
Sbjct: 218 TFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSM-VGK 276
Query: 277 AVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336
V + T++++ + +V K + ++R + + D V Y L+ YG ++EE
Sbjct: 277 GVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQ---PDVVSYALLIKAYGRARREEEA 333
Query: 337 YRVWN--LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394
V+ L V P T+ Y+ ++ + A G +E + +F+ + D M+
Sbjct: 334 LSVFEEMLDAGVRP--THKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTML 391
Query: 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434
S YV + + AE FF I +G +PN ++ TL +G+ +
Sbjct: 392 SAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAK 431
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 123/299 (41%), Gaps = 27/299 (9%)
Query: 146 AAIQLDLIAK--VHG--VASAEDFFLSLPDTLK-----DRRVYGALLNAYVRARMRGNAE 196
+AI +I K V G AE+ F +L D K D+++Y ++ Y +A A
Sbjct: 208 SAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKAR 267
Query: 197 LLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256
+ M KG ++ YN +M+ Y EV + +M+ I+ DV SY + + +
Sbjct: 268 KVFSSMVGKGVPQSTVTYNSLMSFET---SYKEVSKIYDQMQRSDIQPDVVSYALLIKAY 324
Query: 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD 316
G E+ VFE M +D V P ++ + + G VE+A+ + + RD
Sbjct: 325 GRARREEEALSVFEEM-LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMR-----RD 378
Query: 317 RV-----PYHYLLSLYGSVGKKEEVYRVWNLYR--SVFPGVTNLGYHAMISSLARIGDIE 369
R+ Y +LS Y + E + + + P + Y +I A+ D+E
Sbjct: 379 RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT--YGTLIKGYAKANDVE 436
Query: 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428
M +++E+ + I +M + NF A ++ + G P+ + L
Sbjct: 437 KMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVL 495
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSL-- 169
++K + RR + AL V++ M + G R A + I LD A V A+ F S+
Sbjct: 320 LIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN--ILLDAFAISGMVEQAKTVFKSMRR 377
Query: 170 PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229
D Y +L+AYV A AE +++ G+ + + Y ++ Y K + ++
Sbjct: 378 DRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEK 437
Query: 230 VESMVSEMKEKGIR 243
+ + +M+ GI+
Sbjct: 438 MMEVYEKMRLSGIK 451
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 119/270 (44%), Gaps = 5/270 (1%)
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
Y +L++ +A L+ M +K + + +N ++ ++K ++ E E + +M
Sbjct: 298 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI 357
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
++ I D+++YN ++ +K + +FE M V K P+ T++T+ + K +V
Sbjct: 358 KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM-VSKDCFPDVVTYNTLIKGFCKSKRV 416
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS--VFPGVTNLGYH 356
E E R + R D V Y L+ G + +V+ S V P + + Y
Sbjct: 417 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI--MTYS 474
Query: 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416
++ L G +E ++F+ + D I M+ K G D F S+ +
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534
Query: 417 GGKPNSTSWETLAEGHIRERRILEALSCLK 446
G KPN ++ T+ G +R + EA + LK
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLK 564
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 124/270 (45%), Gaps = 13/270 (4%)
Query: 179 YGALLNAYVRARMRGNAEL---LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVS 235
YG ++N + RG+ +L L++KM + +N ++ K + D+ ++
Sbjct: 228 YGVVVNGLCK---RGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFK 284
Query: 236 EMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM 295
EM+ KGIR +V +Y+ +S S G + M ++K +NPN TF+ + ++K
Sbjct: 285 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVKE 343
Query: 296 GQVEKAEESLRRVESRITGRDRVPYHYLLS---LYGSVGKKEEVYRVWNLYRSVFPGVTN 352
G+ +AE+ + R D Y+ L++ ++ + K ++++ + + + FP V
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFE-FMVSKDCFPDVVT 402
Query: 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNS 412
Y+ +I + +E ++F E D ++ +G+ D A+ F
Sbjct: 403 --YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 460
Query: 413 IIEEGGKPNSTSWETLAEGHIRERRILEAL 442
++ +G P+ ++ L +G ++ +AL
Sbjct: 461 MVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 124/262 (47%), Gaps = 9/262 (3%)
Query: 181 ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240
+LLN Y + +A L+D+M + GY ++ + ++ + E ++V M ++
Sbjct: 160 SLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR 219
Query: 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK 300
G + ++ +Y + ++ +G T+ + M+ K + + F+T+ K V+
Sbjct: 220 GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK-IEADVVIFNTIIDSLCKYRHVDD 278
Query: 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWN--LYRSVFPGVTNLGYHAM 358
A + +E++ + V Y L+S S G+ + ++ + + + + P + ++A+
Sbjct: 279 ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT--FNAL 336
Query: 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA--NLMMSWYVKEGNFDKAEAFFNSIIEE 416
I + + G EK++++ +K S DP I N +++ + DKA+ F ++ +
Sbjct: 337 IDAFVKEGKFVEAEKLYDDM--IKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 394
Query: 417 GGKPNSTSWETLAEGHIRERRI 438
P+ ++ TL +G + +R+
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRV 416
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 136/344 (39%), Gaps = 17/344 (4%)
Query: 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238
Y L+N + R A L+ KM GY + + ++ Y K + ++V +M
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182
Query: 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298
E G R D ++ + + + + M V + PN T+ + K G
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM-VQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY-----RSVFPGVTNL 353
+ A L ++E+ D V ++ ++ S+ K V NL+ + + P V
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIID---SLCKYRHVDDALNLFKEMETKGIRPNVVT- 297
Query: 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413
Y ++IS L G ++ + + K + + N ++ +VKEG F +AE ++ +
Sbjct: 298 -YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM 356
Query: 414 IEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKA-CE 472
I+ P+ ++ +L G R+ +A K F +K P V K C+
Sbjct: 357 IKRSIDPDIFTYNSLVNGFCMHDRLDKA----KQMFEFMVSKDCFPDVVTYNTLIKGFCK 412
Query: 473 EESDMGSKEAFVALLRQPGYRKEKDYMSLI-GLTDEAVAENNKK 515
+ E F + + Y +LI GL + +N +K
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 456
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/241 (19%), Positives = 98/241 (40%), Gaps = 2/241 (0%)
Query: 166 FLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK 225
F+ D D Y L+ + +++ + L +M +G ++ Y ++
Sbjct: 390 FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 449
Query: 226 EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTF 285
+ D + + +M G+ D+ +Y+I L + G EK VF+ M+ + + +
Sbjct: 450 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ-KSEIKLDIYIY 508
Query: 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345
+TM K G+V+ + + + + V Y+ ++S S +E Y + +
Sbjct: 509 TTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKE 568
Query: 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405
P + Y+ +I + R GD ++ E S + D L+ + + +G DK
Sbjct: 569 DGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANM-LHDGRLDK 627
Query: 406 A 406
+
Sbjct: 628 S 628
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 95/218 (43%), Gaps = 7/218 (3%)
Query: 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS-CGSQGSTEKMEGVFELM 272
+N +++ K+K++D V S+ +M+ I +Y+YNI ++ C + + + ++M
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 273 KVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL-SLYGSVG 331
K+ P+ T S++ Y ++ A + ++ D + + L+ L+
Sbjct: 148 KL--GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 205
Query: 332 KKEEVYRVWNLY-RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390
E V V + R P + Y +++ L + GD + + + + K D I
Sbjct: 206 ASEAVALVDRMVQRGCQPNLVT--YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263
Query: 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428
N ++ K + D A F + +G +PN ++ +L
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,563,724
Number of Sequences: 539616
Number of extensions: 8141144
Number of successful extensions: 27252
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 23566
Number of HSP's gapped (non-prelim): 1979
length of query: 535
length of database: 191,569,459
effective HSP length: 122
effective length of query: 413
effective length of database: 125,736,307
effective search space: 51929094791
effective search space used: 51929094791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)