Query 009424
Match_columns 535
No_of_seqs 761 out of 2980
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 12:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-72 2.4E-77 603.9 41.9 472 24-514 95-644 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 6.6E-71 1.4E-75 590.1 44.8 476 20-513 192-709 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.1E-67 4.6E-72 552.8 54.0 427 68-505 368-799 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 7.2E-68 1.6E-72 556.3 48.6 448 50-509 373-861 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 6.7E-66 1.5E-70 538.9 49.0 427 66-513 83-546 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.1E-65 1.5E-69 531.2 33.3 460 20-497 128-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-26 3.7E-31 252.6 50.7 425 69-514 464-890 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-25 2.7E-30 245.8 50.1 425 69-513 362-788 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.3E-21 5.1E-26 190.6 33.2 299 186-496 45-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.8E-21 3.9E-26 191.4 31.5 310 152-477 44-363 (389)
11 PRK15174 Vi polysaccharide exp 99.9 4.2E-18 9.1E-23 175.8 41.4 329 109-449 45-379 (656)
12 PRK11447 cellulose synthase su 99.9 5E-18 1.1E-22 187.3 44.7 415 78-513 277-729 (1157)
13 PRK11447 cellulose synthase su 99.9 1.9E-17 4.2E-22 182.6 49.1 434 69-513 61-655 (1157)
14 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-17 1.6E-21 167.2 48.3 397 75-493 132-574 (615)
15 PRK15174 Vi polysaccharide exp 99.9 2.1E-17 4.5E-22 170.7 43.7 333 74-418 46-383 (656)
16 PRK10049 pgaA outer membrane p 99.9 2.3E-17 5E-22 174.1 41.8 411 77-505 22-473 (765)
17 KOG4626 O-linked N-acetylgluco 99.9 7.1E-18 1.5E-22 159.1 33.3 381 105-505 115-500 (966)
18 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-16 2.3E-21 166.0 43.7 392 109-514 130-561 (615)
19 KOG4626 O-linked N-acetylgluco 99.8 1.1E-17 2.3E-22 157.9 29.2 418 73-513 51-474 (966)
20 PRK10049 pgaA outer membrane p 99.8 1.8E-16 4E-21 167.3 41.5 395 103-513 12-445 (765)
21 KOG4422 Uncharacterized conser 99.8 9.3E-16 2E-20 138.9 38.9 415 70-513 116-576 (625)
22 PRK14574 hmsH outer membrane p 99.8 3E-15 6.5E-20 155.2 45.0 400 80-496 44-519 (822)
23 PRK14574 hmsH outer membrane p 99.8 4.1E-14 9E-19 146.8 44.5 386 115-514 43-503 (822)
24 PRK09782 bacteriophage N4 rece 99.8 2.1E-13 4.6E-18 144.5 47.8 389 105-513 180-695 (987)
25 PRK09782 bacteriophage N4 rece 99.7 1.8E-13 3.9E-18 145.0 45.3 416 69-513 77-661 (987)
26 KOG4422 Uncharacterized conser 99.7 3.6E-13 7.8E-18 122.4 35.0 367 103-493 204-593 (625)
27 KOG2002 TPR-containing nuclear 99.7 4.5E-13 9.8E-18 133.6 36.6 423 68-503 268-759 (1018)
28 KOG2003 TPR repeat-containing 99.6 6.3E-13 1.4E-17 121.6 27.0 419 78-509 209-708 (840)
29 KOG2076 RNA polymerase III tra 99.6 1.2E-11 2.5E-16 122.9 37.7 370 115-489 148-554 (895)
30 KOG0495 HAT repeat protein [RN 99.6 1.5E-10 3.3E-15 110.9 42.7 327 178-513 518-869 (913)
31 PRK10747 putative protoheme IX 99.6 6E-12 1.3E-16 122.8 34.7 284 189-489 97-389 (398)
32 KOG2002 TPR-containing nuclear 99.6 7.6E-12 1.6E-16 125.1 34.9 414 89-513 254-734 (1018)
33 KOG1155 Anaphase-promoting com 99.6 9.5E-11 2.1E-15 108.0 38.4 372 101-490 159-536 (559)
34 PRK10747 putative protoheme IX 99.6 4.5E-12 9.7E-17 123.7 31.9 283 156-449 97-388 (398)
35 PF13429 TPR_15: Tetratricopep 99.6 1.4E-14 3E-19 135.0 13.2 259 183-449 15-275 (280)
36 KOG1915 Cell cycle control pro 99.6 1.7E-10 3.6E-15 106.6 38.4 412 69-495 72-541 (677)
37 TIGR00540 hemY_coli hemY prote 99.6 1E-11 2.2E-16 121.9 32.5 290 188-487 96-396 (409)
38 KOG0495 HAT repeat protein [RN 99.6 4.5E-10 9.7E-15 107.9 40.5 416 69-501 439-891 (913)
39 PF13429 TPR_15: Tetratricopep 99.6 3.7E-14 8E-19 132.2 13.2 259 148-414 13-275 (280)
40 KOG1155 Anaphase-promoting com 99.6 9.6E-11 2.1E-15 108.0 34.4 371 140-533 161-552 (559)
41 TIGR00540 hemY_coli hemY prote 99.6 1.6E-11 3.5E-16 120.5 32.0 289 154-449 95-397 (409)
42 KOG2076 RNA polymerase III tra 99.5 1E-10 2.2E-15 116.3 34.3 351 152-513 149-544 (895)
43 KOG1126 DNA-binding cell divis 99.5 1.3E-11 2.8E-16 118.9 25.5 285 121-419 334-623 (638)
44 KOG2003 TPR repeat-containing 99.5 1.6E-10 3.5E-15 106.1 31.3 204 258-476 502-709 (840)
45 KOG1126 DNA-binding cell divis 99.5 1.4E-11 3E-16 118.7 25.3 287 85-386 334-625 (638)
46 COG2956 Predicted N-acetylgluc 99.5 1.7E-10 3.7E-15 101.6 27.8 299 189-499 48-356 (389)
47 COG3071 HemY Uncharacterized e 99.5 6E-10 1.3E-14 101.3 31.5 286 189-489 97-389 (400)
48 COG2956 Predicted N-acetylgluc 99.5 1.7E-10 3.7E-15 101.6 26.9 272 223-505 47-325 (389)
49 PF13041 PPR_2: PPR repeat fam 99.4 3.3E-13 7.2E-18 88.5 5.8 49 174-222 1-49 (50)
50 KOG1915 Cell cycle control pro 99.4 1.5E-08 3.3E-13 94.0 37.5 378 107-500 74-476 (677)
51 COG3071 HemY Uncharacterized e 99.4 2.5E-09 5.4E-14 97.4 31.6 283 119-414 97-388 (400)
52 PF13041 PPR_2: PPR repeat fam 99.4 6.5E-13 1.4E-17 87.1 6.4 50 209-258 1-50 (50)
53 KOG3785 Uncharacterized conser 99.4 7.6E-09 1.7E-13 92.4 32.1 154 333-495 339-495 (557)
54 KOG4318 Bicoid mRNA stability 99.4 2.6E-11 5.6E-16 120.0 18.4 83 384-473 201-283 (1088)
55 KOG4318 Bicoid mRNA stability 99.4 5.2E-10 1.1E-14 111.0 26.6 254 92-368 11-287 (1088)
56 KOG0547 Translocase of outer m 99.4 4.9E-09 1.1E-13 97.6 30.9 385 76-488 121-564 (606)
57 KOG1173 Anaphase-promoting com 99.3 1.8E-08 3.9E-13 95.7 32.6 412 76-504 55-532 (611)
58 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.1E-14 97.6 25.8 198 176-377 31-228 (234)
59 TIGR02521 type_IV_pilW type IV 99.3 2.1E-09 4.5E-14 97.4 25.8 198 284-489 33-231 (234)
60 PRK12370 invasion protein regu 99.3 5.5E-09 1.2E-13 106.7 30.9 267 210-491 255-536 (553)
61 PRK12370 invasion protein regu 99.3 7.8E-09 1.7E-13 105.6 30.6 263 174-449 254-533 (553)
62 KOG2047 mRNA splicing factor [ 99.3 3.7E-07 8.1E-12 88.1 37.9 403 71-490 139-615 (835)
63 PF12569 NARP1: NMDA receptor- 99.2 1.4E-07 3.1E-12 93.3 34.4 289 151-449 12-332 (517)
64 KOG1173 Anaphase-promoting com 99.2 4.5E-08 9.8E-13 93.1 28.9 285 175-473 243-534 (611)
65 KOG1129 TPR repeat-containing 99.2 1.7E-09 3.6E-14 95.6 17.5 228 180-415 227-457 (478)
66 KOG1129 TPR repeat-containing 99.2 4E-09 8.6E-14 93.2 19.2 228 215-449 227-456 (478)
67 KOG2047 mRNA splicing factor [ 99.2 3.8E-06 8.3E-11 81.4 39.7 406 71-496 103-584 (835)
68 PF12569 NARP1: NMDA receptor- 99.1 1.3E-07 2.8E-12 93.6 30.2 291 184-489 12-333 (517)
69 KOG4162 Predicted calmodulin-b 99.1 2.8E-06 6E-11 84.2 37.9 421 83-513 240-772 (799)
70 KOG0547 Translocase of outer m 99.1 6.4E-07 1.4E-11 83.9 31.1 222 220-449 335-564 (606)
71 KOG1840 Kinesin light chain [C 99.1 1.7E-07 3.8E-12 91.6 28.5 134 355-488 328-477 (508)
72 KOG1840 Kinesin light chain [C 99.1 1.3E-07 2.8E-12 92.5 26.0 238 212-449 200-477 (508)
73 cd05804 StaR_like StaR_like; a 99.0 4.2E-06 9E-11 81.3 34.7 309 176-490 6-336 (355)
74 PRK11189 lipoprotein NlpI; Pro 99.0 8.2E-07 1.8E-11 83.1 27.6 95 285-381 67-161 (296)
75 KOG2376 Signal recognition par 99.0 3.6E-05 7.9E-10 74.2 39.2 403 77-508 19-505 (652)
76 KOG1174 Anaphase-promoting com 99.0 2.7E-05 5.9E-10 71.8 35.6 350 143-507 97-483 (564)
77 KOG3785 Uncharacterized conser 99.0 1.2E-05 2.6E-10 72.5 32.1 205 253-471 292-504 (557)
78 PRK11189 lipoprotein NlpI; Pro 99.0 9.2E-07 2E-11 82.8 26.6 216 191-416 41-265 (296)
79 cd05804 StaR_like StaR_like; a 98.9 4.7E-06 1E-10 80.9 31.9 53 220-273 123-175 (355)
80 KOG4162 Predicted calmodulin-b 98.9 1.5E-05 3.3E-10 79.1 34.5 135 354-496 652-789 (799)
81 KOG1174 Anaphase-promoting com 98.9 3.4E-05 7.4E-10 71.1 33.8 303 183-500 201-510 (564)
82 KOG0985 Vesicle coat protein c 98.9 8.1E-06 1.8E-10 83.0 32.2 274 127-447 968-1245(1666)
83 KOG1156 N-terminal acetyltrans 98.9 3.8E-05 8.3E-10 74.8 35.5 400 73-493 11-437 (700)
84 KOG1156 N-terminal acetyltrans 98.9 5.9E-05 1.3E-09 73.6 36.7 390 83-492 54-470 (700)
85 COG3063 PilF Tfp pilus assembl 98.9 2.5E-06 5.3E-11 72.5 24.1 192 253-449 42-234 (250)
86 KOG0985 Vesicle coat protein c 98.9 1.5E-05 3.2E-10 81.2 32.5 347 91-487 967-1338(1666)
87 COG3063 PilF Tfp pilus assembl 98.9 2.7E-06 5.8E-11 72.3 23.2 202 284-494 37-240 (250)
88 KOG1914 mRNA cleavage and poly 98.8 0.00012 2.5E-09 70.1 37.0 423 68-505 18-520 (656)
89 KOG3616 Selective LIM binding 98.8 2.8E-06 6E-11 83.4 25.4 110 217-340 738-847 (1636)
90 PRK04841 transcriptional regul 98.8 4.9E-05 1.1E-09 83.7 37.7 340 152-491 383-761 (903)
91 PF04733 Coatomer_E: Coatomer 98.8 2.5E-07 5.4E-12 85.3 16.3 85 402-492 182-267 (290)
92 PF12854 PPR_1: PPR repeat 98.8 6.1E-09 1.3E-13 61.1 3.5 32 206-237 2-33 (34)
93 KOG1070 rRNA processing protei 98.8 6.9E-06 1.5E-10 86.4 26.4 206 210-420 1457-1667(1710)
94 KOG3616 Selective LIM binding 98.7 5.9E-06 1.3E-10 81.2 24.1 268 147-449 619-909 (1636)
95 KOG1070 rRNA processing protei 98.7 8.5E-06 1.8E-10 85.7 26.3 245 234-487 1447-1697(1710)
96 KOG4340 Uncharacterized conser 98.7 7.1E-05 1.5E-09 66.1 28.0 324 73-414 13-373 (459)
97 PF12854 PPR_1: PPR repeat 98.7 1.6E-08 3.4E-13 59.4 3.8 32 417-448 2-33 (34)
98 KOG1914 mRNA cleavage and poly 98.7 0.00011 2.4E-09 70.2 30.8 354 140-504 17-481 (656)
99 PF04733 Coatomer_E: Coatomer 98.7 4.4E-07 9.5E-12 83.7 14.9 81 333-415 183-264 (290)
100 KOG0548 Molecular co-chaperone 98.7 0.00015 3.4E-09 69.3 31.7 102 80-186 12-114 (539)
101 KOG1125 TPR repeat-containing 98.7 1.7E-06 3.7E-11 82.9 18.7 264 256-532 295-578 (579)
102 KOG0624 dsRNA-activated protei 98.7 0.00022 4.8E-09 64.3 30.9 205 217-449 161-368 (504)
103 KOG4340 Uncharacterized conser 98.7 1.5E-05 3.2E-10 70.3 22.2 299 101-412 5-335 (459)
104 PRK04841 transcriptional regul 98.7 0.00026 5.6E-09 78.0 37.9 355 152-513 350-749 (903)
105 KOG0548 Molecular co-chaperone 98.7 0.00011 2.4E-09 70.3 29.1 104 114-221 10-114 (539)
106 KOG2376 Signal recognition par 98.6 0.00068 1.5E-08 65.7 34.7 348 111-489 17-445 (652)
107 KOG1128 Uncharacterized conser 98.6 8.3E-06 1.8E-10 80.5 20.7 232 248-505 400-633 (777)
108 KOG3617 WD40 and TPR repeat-co 98.6 0.00021 4.7E-09 71.6 30.0 208 245-485 911-1169(1416)
109 PLN02789 farnesyltranstransfer 98.6 5.2E-05 1.1E-09 71.0 24.3 207 291-508 46-268 (320)
110 KOG0624 dsRNA-activated protei 98.5 0.00048 1E-08 62.2 28.1 312 149-496 44-376 (504)
111 KOG1125 TPR repeat-containing 98.5 1.1E-05 2.4E-10 77.5 19.0 221 153-379 295-525 (579)
112 KOG1128 Uncharacterized conser 98.5 4.3E-05 9.4E-10 75.6 23.2 239 139-398 394-634 (777)
113 PLN02789 farnesyltranstransfer 98.5 0.0002 4.3E-09 67.2 26.8 146 334-488 125-300 (320)
114 TIGR03302 OM_YfiO outer membra 98.5 2.9E-05 6.4E-10 70.3 21.1 58 430-489 174-231 (235)
115 TIGR03302 OM_YfiO outer membra 98.5 2.4E-05 5.2E-10 70.9 19.7 166 279-449 30-230 (235)
116 PRK10370 formate-dependent nit 98.5 5.2E-05 1.1E-09 66.1 20.2 117 330-449 52-171 (198)
117 PRK10370 formate-dependent nit 98.4 7.9E-05 1.7E-09 64.9 19.9 161 324-505 23-187 (198)
118 KOG3617 WD40 and TPR repeat-co 98.4 8.1E-05 1.7E-09 74.5 21.5 150 141-308 724-884 (1416)
119 TIGR00756 PPR pentatricopeptid 98.4 5.4E-07 1.2E-11 53.8 4.1 33 178-210 2-34 (35)
120 KOG1127 TPR repeat-containing 98.4 0.00057 1.2E-08 70.2 26.7 394 72-479 494-941 (1238)
121 KOG1127 TPR repeat-containing 98.3 0.00049 1.1E-08 70.7 26.2 360 122-497 474-886 (1238)
122 PRK15359 type III secretion sy 98.3 3.1E-05 6.8E-10 63.7 14.4 90 358-449 30-119 (144)
123 PRK14720 transcript cleavage f 98.3 0.00025 5.4E-09 74.3 24.0 201 210-449 30-250 (906)
124 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.7E-11 52.2 4.4 35 212-246 1-35 (35)
125 PRK15359 type III secretion sy 98.3 5.5E-05 1.2E-09 62.2 15.6 122 372-504 13-135 (144)
126 PRK15179 Vi polysaccharide bio 98.3 0.00042 9E-09 71.8 25.1 132 315-449 84-215 (694)
127 COG4783 Putative Zn-dependent 98.3 0.001 2.2E-08 63.4 25.2 196 159-380 253-453 (484)
128 COG5010 TadD Flp pilus assembl 98.3 0.00029 6.3E-09 61.5 19.8 159 250-413 70-228 (257)
129 PRK14720 transcript cleavage f 98.3 0.00052 1.1E-08 72.0 25.3 151 247-433 117-268 (906)
130 PF13812 PPR_3: Pentatricopept 98.3 1.4E-06 3.1E-11 51.5 4.1 33 177-209 2-34 (34)
131 PRK15179 Vi polysaccharide bio 98.3 0.0004 8.6E-09 72.0 24.2 206 219-449 36-243 (694)
132 COG4783 Putative Zn-dependent 98.3 0.00093 2E-08 63.6 24.3 208 227-464 253-462 (484)
133 COG5010 TadD Flp pilus assembl 98.2 0.00031 6.7E-09 61.3 19.2 159 286-448 70-228 (257)
134 KOG3081 Vesicle coat complex C 98.2 0.0016 3.4E-08 57.1 22.9 176 304-494 95-275 (299)
135 KOG3081 Vesicle coat complex C 98.2 0.0013 2.8E-08 57.5 22.2 171 339-533 95-270 (299)
136 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.7E-11 50.0 4.4 33 212-244 2-34 (34)
137 TIGR02552 LcrH_SycD type III s 98.2 8.5E-05 1.8E-09 60.6 14.2 92 356-449 21-112 (135)
138 KOG3060 Uncharacterized conser 98.1 0.0015 3.2E-08 56.8 20.3 186 83-274 25-219 (289)
139 TIGR02552 LcrH_SycD type III s 98.1 0.00015 3.4E-09 59.1 13.5 116 374-496 5-120 (135)
140 PF01535 PPR: PPR repeat; Int 98.0 4.6E-06 1E-10 48.0 3.0 29 178-206 2-30 (31)
141 KOG2053 Mitochondrial inherita 98.0 0.031 6.6E-07 57.5 40.1 209 57-275 29-255 (932)
142 KOG3060 Uncharacterized conser 98.0 0.009 1.9E-07 52.1 22.5 159 325-492 60-222 (289)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00036 7.9E-09 66.8 15.6 118 326-449 178-295 (395)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00046 9.9E-09 66.1 16.1 126 177-309 170-295 (395)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00037 7.9E-09 57.6 13.8 117 330-448 24-144 (145)
146 PF01535 PPR: PPR repeat; Int 97.9 1.3E-05 2.9E-10 46.1 3.6 31 212-242 1-31 (31)
147 PF06239 ECSIT: Evolutionarily 97.8 0.00025 5.5E-09 60.3 11.0 99 163-261 34-153 (228)
148 PF10037 MRP-S27: Mitochondria 97.8 0.0003 6.5E-09 67.7 12.9 122 314-435 63-186 (429)
149 PF10037 MRP-S27: Mitochondria 97.8 0.0002 4.3E-09 68.9 11.5 120 140-259 63-186 (429)
150 PF08579 RPM2: Mitochondrial r 97.8 0.00033 7.2E-09 52.7 10.1 81 178-258 27-116 (120)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00055 1.2E-08 54.3 12.4 101 390-496 5-111 (119)
152 PF09976 TPR_21: Tetratricopep 97.8 0.00055 1.2E-08 56.5 12.7 85 150-236 55-143 (145)
153 PF05843 Suf: Suppressor of fo 97.7 0.00043 9.2E-09 64.1 11.7 130 107-240 2-136 (280)
154 PF05843 Suf: Suppressor of fo 97.7 0.0012 2.5E-08 61.2 14.3 128 178-309 3-134 (280)
155 cd00189 TPR Tetratricopeptide 97.7 0.001 2.2E-08 49.8 11.8 25 424-448 70-94 (100)
156 cd00189 TPR Tetratricopeptide 97.7 0.00087 1.9E-08 50.2 11.2 98 389-492 2-99 (100)
157 PLN03088 SGT1, suppressor of 97.7 0.0014 3E-08 63.0 14.6 103 361-471 11-113 (356)
158 PRK02603 photosystem I assembl 97.6 0.0035 7.7E-08 53.4 14.9 82 355-437 38-121 (172)
159 PF14938 SNAP: Soluble NSF att 97.6 0.013 2.9E-07 54.4 19.8 23 427-449 160-182 (282)
160 PF08579 RPM2: Mitochondrial r 97.6 0.0011 2.3E-08 50.0 9.7 75 358-432 31-114 (120)
161 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0044 9.6E-08 48.9 14.3 58 358-415 45-104 (119)
162 KOG0553 TPR repeat-containing 97.5 0.0013 2.8E-08 58.8 11.4 87 327-415 91-177 (304)
163 PF12895 Apc3: Anaphase-promot 97.5 0.0004 8.6E-09 51.1 6.4 80 400-486 2-83 (84)
164 PRK10866 outer membrane biogen 97.5 0.036 7.7E-07 50.1 20.2 195 285-488 35-239 (243)
165 PF12895 Apc3: Anaphase-promot 97.5 0.00028 6.2E-09 51.9 5.4 80 366-447 3-83 (84)
166 PLN03088 SGT1, suppressor of 97.4 0.0036 7.9E-08 60.2 13.6 104 394-504 9-113 (356)
167 PRK10153 DNA-binding transcrip 97.4 0.01 2.3E-07 59.7 17.1 143 313-464 333-489 (517)
168 CHL00033 ycf3 photosystem I as 97.4 0.0039 8.4E-08 53.0 12.3 93 354-447 37-138 (168)
169 KOG1538 Uncharacterized conser 97.4 0.0049 1.1E-07 60.6 13.7 207 194-449 618-844 (1081)
170 PRK10153 DNA-binding transcrip 97.3 0.019 4E-07 57.9 17.9 142 348-496 333-488 (517)
171 PRK02603 photosystem I assembl 97.3 0.022 4.8E-07 48.5 16.1 84 320-404 38-123 (172)
172 PRK15363 pathogenicity island 97.3 0.03 6.5E-07 45.7 15.6 91 357-449 40-130 (157)
173 PF14938 SNAP: Soluble NSF att 97.3 0.033 7.2E-07 51.8 18.3 145 290-449 102-264 (282)
174 KOG2041 WD40 repeat protein [G 97.3 0.26 5.6E-06 49.5 25.8 29 243-271 849-877 (1189)
175 CHL00033 ycf3 photosystem I as 97.2 0.0088 1.9E-07 50.8 13.0 65 282-346 35-101 (168)
176 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.2E-08 45.7 6.8 50 399-449 3-52 (68)
177 PF06239 ECSIT: Evolutionarily 97.2 0.0056 1.2E-07 52.3 11.1 34 438-475 119-152 (228)
178 KOG2041 WD40 repeat protein [G 97.2 0.16 3.5E-06 50.9 22.2 134 158-306 678-820 (1189)
179 KOG0553 TPR repeat-containing 97.2 0.0044 9.6E-08 55.4 10.7 129 360-496 89-221 (304)
180 PRK10866 outer membrane biogen 97.2 0.12 2.6E-06 46.7 20.2 174 255-449 41-239 (243)
181 PF13525 YfiO: Outer membrane 97.1 0.097 2.1E-06 45.9 18.9 176 289-481 12-198 (203)
182 PF04840 Vps16_C: Vps16, C-ter 97.1 0.24 5.3E-06 46.5 29.4 111 319-449 179-289 (319)
183 PRK15363 pathogenicity island 97.1 0.016 3.4E-07 47.3 12.3 97 389-491 37-133 (157)
184 PF13432 TPR_16: Tetratricopep 97.1 0.0015 3.2E-08 45.2 5.7 52 397-449 7-58 (65)
185 PF03704 BTAD: Bacterial trans 97.0 0.028 6.1E-07 46.4 13.4 76 388-464 63-139 (146)
186 KOG2796 Uncharacterized conser 97.0 0.045 9.9E-07 48.1 14.4 128 321-449 181-313 (366)
187 COG4700 Uncharacterized protei 97.0 0.18 3.8E-06 42.1 17.1 126 350-481 87-213 (251)
188 PF12688 TPR_5: Tetratrico pep 97.0 0.063 1.4E-06 42.1 14.0 90 325-414 9-102 (120)
189 PF13414 TPR_11: TPR repeat; P 97.0 0.0037 8E-08 43.8 6.6 62 387-449 3-65 (69)
190 PF14559 TPR_19: Tetratricopep 96.9 0.0041 9E-08 43.4 6.7 63 117-182 2-64 (68)
191 COG4235 Cytochrome c biogenesi 96.9 0.068 1.5E-06 48.3 15.5 95 353-449 157-254 (287)
192 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.43 9.2E-06 45.6 30.7 133 140-274 39-189 (660)
193 PF12688 TPR_5: Tetratrico pep 96.8 0.091 2E-06 41.2 13.9 88 218-308 8-101 (120)
194 PF04840 Vps16_C: Vps16, C-ter 96.8 0.46 1E-05 44.7 30.6 124 284-433 179-302 (319)
195 KOG2796 Uncharacterized conser 96.8 0.15 3.2E-06 45.0 15.7 145 353-503 178-328 (366)
196 PRK10803 tol-pal system protei 96.7 0.03 6.4E-07 51.0 12.2 107 388-496 144-252 (263)
197 PF13432 TPR_16: Tetratricopep 96.7 0.012 2.5E-07 40.6 7.4 57 359-416 4-60 (65)
198 KOG2053 Mitochondrial inherita 96.7 1 2.2E-05 47.0 39.4 72 118-192 55-126 (932)
199 PF13414 TPR_11: TPR repeat; P 96.7 0.0063 1.4E-07 42.6 6.0 66 421-492 2-69 (69)
200 COG4700 Uncharacterized protei 96.7 0.31 6.8E-06 40.7 17.5 65 209-273 87-151 (251)
201 KOG2280 Vacuolar assembly/sort 96.6 1 2.2E-05 46.0 30.4 319 99-449 425-771 (829)
202 KOG0550 Molecular chaperone (D 96.6 0.38 8.3E-06 45.4 18.3 85 183-270 56-141 (486)
203 PF13525 YfiO: Outer membrane 96.6 0.45 9.7E-06 41.7 19.4 167 183-371 12-197 (203)
204 COG4235 Cytochrome c biogenesi 96.6 0.27 5.9E-06 44.6 16.8 109 380-496 150-262 (287)
205 KOG3941 Intermediate in Toll s 96.5 0.02 4.4E-07 50.7 9.3 101 161-261 52-173 (406)
206 PF12921 ATP13: Mitochondrial 96.5 0.027 5.8E-07 44.7 9.2 52 241-292 47-98 (126)
207 PF13371 TPR_9: Tetratricopept 96.5 0.017 3.6E-07 41.0 7.5 53 396-449 4-56 (73)
208 PF03704 BTAD: Bacterial trans 96.5 0.21 4.5E-06 41.1 14.9 71 354-425 64-139 (146)
209 KOG2280 Vacuolar assembly/sort 96.4 1.4 3E-05 45.0 24.3 307 148-491 442-774 (829)
210 COG3898 Uncharacterized membra 96.4 0.89 1.9E-05 42.7 31.1 300 177-496 83-398 (531)
211 PRK10803 tol-pal system protei 96.4 0.088 1.9E-06 48.0 12.8 94 285-380 146-245 (263)
212 KOG1538 Uncharacterized conser 96.3 0.37 8E-06 48.1 17.1 223 214-491 601-847 (1081)
213 PF12921 ATP13: Mitochondrial 96.3 0.071 1.5E-06 42.3 10.4 101 352-475 2-102 (126)
214 PF13281 DUF4071: Domain of un 96.1 1.3 2.8E-05 42.3 20.3 127 365-493 195-337 (374)
215 COG3898 Uncharacterized membra 96.1 1.3 2.9E-05 41.6 29.5 281 118-416 96-392 (531)
216 PF13281 DUF4071: Domain of un 95.9 1.7 3.6E-05 41.6 18.8 77 251-327 146-227 (374)
217 PRK15331 chaperone protein Sic 95.8 0.85 1.8E-05 37.6 14.7 87 397-489 47-133 (165)
218 PF13371 TPR_9: Tetratricopept 95.8 0.071 1.5E-06 37.6 7.9 55 185-240 4-58 (73)
219 PF13424 TPR_12: Tetratricopep 95.8 0.019 4E-07 41.4 4.8 62 388-449 6-73 (78)
220 KOG2114 Vacuolar assembly/sort 95.8 2.9 6.2E-05 43.5 20.9 61 428-496 711-775 (933)
221 smart00299 CLH Clathrin heavy 95.7 0.87 1.9E-05 37.1 15.0 43 251-295 12-54 (140)
222 PF13424 TPR_12: Tetratricopep 95.6 0.075 1.6E-06 38.1 7.3 61 354-414 7-73 (78)
223 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.24 5.2E-06 47.9 12.1 63 353-415 76-140 (453)
224 KOG1130 Predicted G-alpha GTPa 95.5 0.51 1.1E-05 44.5 13.7 52 115-166 26-78 (639)
225 smart00299 CLH Clathrin heavy 95.5 0.92 2E-05 36.9 14.3 85 180-272 11-95 (140)
226 PF09205 DUF1955: Domain of un 95.5 0.96 2.1E-05 35.5 15.4 137 257-419 13-152 (161)
227 COG4105 ComL DNA uptake lipopr 95.4 1.8 4E-05 38.5 20.0 179 292-493 44-236 (254)
228 PF07079 DUF1347: Protein of u 95.3 2.9 6.3E-05 40.3 33.2 390 82-487 18-521 (549)
229 PRK15331 chaperone protein Sic 95.2 0.44 9.6E-06 39.3 11.1 84 364-449 49-132 (165)
230 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.17 3.7E-06 48.8 9.8 63 422-490 75-141 (453)
231 COG3629 DnrI DNA-binding trans 95.1 0.26 5.7E-06 44.8 10.3 83 387-470 153-236 (280)
232 PF10300 DUF3808: Protein of u 95.0 1.4 3E-05 44.2 16.4 117 365-488 246-374 (468)
233 PF10300 DUF3808: Protein of u 95.0 1.8 4E-05 43.4 17.2 177 231-414 177-374 (468)
234 PRK11906 transcriptional regul 95.0 1.2 2.7E-05 43.2 15.0 98 403-507 320-420 (458)
235 COG0457 NrfG FOG: TPR repeat [ 94.9 2.6 5.5E-05 37.2 28.6 126 361-492 139-267 (291)
236 KOG4555 TPR repeat-containing 94.8 0.46 9.9E-06 37.2 9.5 96 396-493 52-147 (175)
237 PF07035 Mic1: Colon cancer-as 94.7 2.1 4.6E-05 35.7 14.4 134 91-239 14-148 (167)
238 PF04053 Coatomer_WDAD: Coatom 94.7 0.8 1.7E-05 45.3 13.5 154 187-376 272-426 (443)
239 KOG1130 Predicted G-alpha GTPa 94.7 1.7 3.6E-05 41.3 14.5 257 185-449 26-342 (639)
240 KOG1585 Protein required for f 94.6 2.9 6.3E-05 36.8 15.3 58 425-484 193-250 (308)
241 COG5107 RNA14 Pre-mRNA 3'-end 94.6 4.5 9.8E-05 39.0 30.0 67 68-136 40-106 (660)
242 COG3118 Thioredoxin domain-con 94.6 3.5 7.6E-05 37.5 17.4 145 111-260 139-286 (304)
243 PF13170 DUF4003: Protein of u 94.6 4 8.6E-05 38.0 20.5 132 298-431 78-226 (297)
244 PF13512 TPR_18: Tetratricopep 94.5 1.4 3E-05 35.5 11.9 75 362-436 20-96 (142)
245 PF04053 Coatomer_WDAD: Coatom 94.2 1.6 3.5E-05 43.2 14.4 134 106-272 295-428 (443)
246 PF13428 TPR_14: Tetratricopep 94.2 0.2 4.2E-06 31.2 5.4 39 389-428 3-41 (44)
247 PF13170 DUF4003: Protein of u 94.1 2 4.2E-05 40.1 14.0 129 192-323 78-223 (297)
248 KOG3941 Intermediate in Toll s 94.0 0.78 1.7E-05 41.1 10.4 34 334-367 140-173 (406)
249 COG3118 Thioredoxin domain-con 93.9 2 4.4E-05 39.0 13.0 140 188-331 146-286 (304)
250 PF04184 ST7: ST7 protein; In 93.8 7.5 0.00016 38.3 17.3 59 391-449 263-322 (539)
251 PF13428 TPR_14: Tetratricopep 93.8 0.15 3.3E-06 31.7 4.3 38 463-500 3-40 (44)
252 PF08631 SPO22: Meiosis protei 93.7 5.8 0.00013 36.7 25.6 164 319-488 86-273 (278)
253 PF09613 HrpB1_HrpK: Bacterial 93.6 1.9 4.2E-05 35.4 11.4 91 398-496 21-112 (160)
254 PF09205 DUF1955: Domain of un 93.6 2.9 6.4E-05 32.9 12.5 137 328-493 13-152 (161)
255 KOG2610 Uncharacterized conser 93.6 2.1 4.6E-05 39.5 12.5 154 294-449 115-274 (491)
256 KOG1585 Protein required for f 93.4 5.2 0.00011 35.3 14.9 203 214-444 34-249 (308)
257 COG1729 Uncharacterized protei 93.4 1.3 2.9E-05 39.7 11.0 58 323-380 184-243 (262)
258 COG1729 Uncharacterized protei 93.4 1.6 3.4E-05 39.3 11.3 97 319-416 144-244 (262)
259 PF07079 DUF1347: Protein of u 93.2 8.6 0.00019 37.3 30.2 369 72-467 79-531 (549)
260 KOG0543 FKBP-type peptidyl-pro 93.2 3 6.5E-05 39.7 13.3 60 355-415 260-319 (397)
261 COG0457 NrfG FOG: TPR repeat [ 92.9 6.2 0.00013 34.6 28.6 223 225-449 37-263 (291)
262 KOG0543 FKBP-type peptidyl-pro 92.6 3.8 8.3E-05 39.0 13.3 93 289-382 215-321 (397)
263 COG3629 DnrI DNA-binding trans 92.6 1.6 3.4E-05 39.9 10.4 75 178-253 155-234 (280)
264 PF13512 TPR_18: Tetratricopep 92.5 4.9 0.00011 32.5 12.7 75 292-366 20-96 (142)
265 COG4649 Uncharacterized protei 92.4 5.6 0.00012 33.1 13.6 132 283-415 60-195 (221)
266 KOG1920 IkappaB kinase complex 92.4 20 0.00043 39.4 20.2 114 243-377 932-1051(1265)
267 cd00923 Cyt_c_Oxidase_Va Cytoc 92.3 0.96 2.1E-05 33.3 6.9 64 437-505 22-86 (103)
268 PF08631 SPO22: Meiosis protei 92.2 9.7 0.00021 35.3 24.8 163 284-449 86-273 (278)
269 PF07035 Mic1: Colon cancer-as 92.1 6.3 0.00014 32.9 14.8 133 339-489 16-148 (167)
270 PF04184 ST7: ST7 protein; In 92.1 5.4 0.00012 39.2 13.7 153 331-500 182-336 (539)
271 PRK11906 transcriptional regul 92.0 13 0.00029 36.4 19.0 159 318-485 252-431 (458)
272 KOG1941 Acetylcholine receptor 91.7 6.9 0.00015 36.7 13.3 45 223-267 18-64 (518)
273 TIGR02561 HrpB1_HrpK type III 91.7 6.2 0.00014 32.0 11.7 48 400-449 23-71 (153)
274 KOG0550 Molecular chaperone (D 91.5 13 0.00029 35.6 22.4 255 115-382 58-351 (486)
275 KOG4555 TPR repeat-containing 91.5 4.2 9.2E-05 32.0 10.1 91 291-382 52-145 (175)
276 PF02284 COX5A: Cytochrome c o 91.3 1.2 2.6E-05 33.2 6.7 62 440-505 28-89 (108)
277 KOG1941 Acetylcholine receptor 91.3 8.5 0.00018 36.1 13.5 165 249-413 86-272 (518)
278 COG4105 ComL DNA uptake lipopr 90.6 12 0.00027 33.4 18.4 173 257-449 45-231 (254)
279 PF10602 RPN7: 26S proteasome 90.5 5.6 0.00012 33.9 11.2 97 177-273 37-140 (177)
280 PF00637 Clathrin: Region in C 90.5 0.089 1.9E-06 43.1 0.3 86 357-449 12-97 (143)
281 KOG2610 Uncharacterized conser 90.4 15 0.00033 34.2 21.1 116 84-201 117-234 (491)
282 PF10602 RPN7: 26S proteasome 90.2 4.4 9.6E-05 34.5 10.4 62 284-345 38-101 (177)
283 KOG4570 Uncharacterized conser 90.0 4.1 8.8E-05 37.3 10.2 98 140-241 61-165 (418)
284 KOG1550 Extracellular protein 90.0 24 0.00051 36.5 17.4 179 262-449 228-424 (552)
285 PF13176 TPR_7: Tetratricopept 90.0 0.63 1.4E-05 27.3 3.7 26 424-449 1-26 (36)
286 KOG2114 Vacuolar assembly/sort 89.8 29 0.00063 36.6 19.8 138 81-237 379-516 (933)
287 PF00637 Clathrin: Region in C 89.3 0.0074 1.6E-07 49.6 -7.1 49 186-234 17-65 (143)
288 COG4649 Uncharacterized protei 89.3 12 0.00026 31.3 13.6 122 328-449 69-194 (221)
289 KOG4570 Uncharacterized conser 89.1 4 8.6E-05 37.4 9.4 48 437-488 115-162 (418)
290 PF13176 TPR_7: Tetratricopept 88.9 1 2.2E-05 26.5 4.0 23 214-236 2-24 (36)
291 PF02259 FAT: FAT domain; Int 88.7 23 0.00051 33.9 22.8 64 386-449 145-211 (352)
292 PF13431 TPR_17: Tetratricopep 88.3 0.61 1.3E-05 27.0 2.7 21 421-441 12-32 (34)
293 COG3947 Response regulator con 88.2 20 0.00044 32.7 15.1 73 390-463 282-355 (361)
294 PF09613 HrpB1_HrpK: Bacterial 87.9 14 0.00031 30.5 12.4 87 155-245 22-111 (160)
295 PF00515 TPR_1: Tetratricopept 87.8 0.9 2E-05 26.1 3.3 27 423-449 2-28 (34)
296 PF13431 TPR_17: Tetratricopep 87.5 0.77 1.7E-05 26.6 2.8 31 376-407 3-33 (34)
297 KOG0276 Vesicle coat complex C 86.7 13 0.00029 37.4 12.1 99 257-377 648-746 (794)
298 PF02284 COX5A: Cytochrome c o 86.4 4.6 0.0001 30.2 6.8 59 229-289 28-86 (108)
299 COG4455 ImpE Protein of avirul 86.3 22 0.00048 31.0 11.8 132 354-496 3-140 (273)
300 TIGR02508 type_III_yscG type I 86.2 12 0.00025 28.0 8.6 79 121-206 20-98 (115)
301 PF13929 mRNA_stabil: mRNA sta 86.2 27 0.00059 32.0 16.4 62 279-340 199-261 (292)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 85.4 5.9 0.00013 29.3 6.8 47 228-274 24-70 (103)
303 PF07719 TPR_2: Tetratricopept 85.2 1.5 3.2E-05 25.0 3.3 26 424-449 3-28 (34)
304 PF02259 FAT: FAT domain; Int 85.2 36 0.00079 32.6 25.0 65 281-345 145-212 (352)
305 PF04097 Nic96: Nup93/Nic96; 85.1 54 0.0012 34.4 23.3 219 72-310 114-355 (613)
306 KOG4077 Cytochrome c oxidase, 84.2 6.6 0.00014 30.7 6.9 62 440-505 67-128 (149)
307 PF11207 DUF2989: Protein of u 83.2 12 0.00027 32.2 9.0 75 404-480 123-197 (203)
308 COG4455 ImpE Protein of avirul 83.0 10 0.00022 33.0 8.4 78 390-470 4-81 (273)
309 KOG2063 Vacuolar assembly/sort 83.0 62 0.0013 35.1 15.8 41 394-434 598-638 (877)
310 PRK09687 putative lyase; Provi 82.4 42 0.00091 31.1 26.6 23 392-415 240-262 (280)
311 KOG2034 Vacuolar sorting prote 82.2 76 0.0016 34.0 26.6 235 149-403 364-644 (911)
312 KOG1258 mRNA processing protei 81.4 66 0.0014 32.7 36.0 131 69-205 44-180 (577)
313 KOG0276 Vesicle coat complex C 81.3 22 0.00048 35.9 11.1 97 294-411 649-745 (794)
314 PF11207 DUF2989: Protein of u 81.2 13 0.00028 32.0 8.5 71 123-196 123-198 (203)
315 PF13374 TPR_10: Tetratricopep 80.7 4.5 9.8E-05 24.2 4.4 26 389-414 4-29 (42)
316 KOG1464 COP9 signalosome, subu 80.6 44 0.00095 30.2 17.6 209 241-450 21-259 (440)
317 PF13374 TPR_10: Tetratricopep 80.4 4.8 0.0001 24.1 4.5 26 178-203 4-29 (42)
318 COG4785 NlpI Lipoprotein NlpI, 80.1 40 0.00087 29.5 14.0 33 462-494 238-270 (297)
319 PF07163 Pex26: Pex26 protein; 80.1 23 0.00051 32.1 9.9 87 324-410 90-181 (309)
320 PF00515 TPR_1: Tetratricopept 79.8 5.8 0.00013 22.5 4.4 24 285-308 4-27 (34)
321 PRK15180 Vi polysaccharide bio 79.6 22 0.00047 34.9 10.1 118 328-449 300-418 (831)
322 PHA02875 ankyrin repeat protei 79.6 67 0.0015 31.7 14.9 129 93-230 17-151 (413)
323 PF06552 TOM20_plant: Plant sp 78.7 40 0.00086 28.6 11.1 60 422-493 69-139 (186)
324 PF07719 TPR_2: Tetratricopept 78.7 4.3 9.3E-05 23.0 3.6 32 462-493 2-33 (34)
325 PF10579 Rapsyn_N: Rapsyn N-te 78.4 7.9 0.00017 27.5 5.2 46 329-374 18-65 (80)
326 COG4785 NlpI Lipoprotein NlpI, 77.6 49 0.0011 29.0 15.7 86 153-241 75-163 (297)
327 COG2976 Uncharacterized protei 77.6 33 0.00072 29.4 9.6 91 149-241 95-189 (207)
328 KOG2063 Vacuolar assembly/sort 77.2 1.2E+02 0.0025 33.1 28.1 117 284-400 506-639 (877)
329 PF07575 Nucleopor_Nup85: Nup8 76.6 1E+02 0.0022 32.1 18.1 241 258-532 309-563 (566)
330 KOG4234 TPR repeat-containing 76.5 40 0.00087 29.1 9.7 87 329-416 107-197 (271)
331 PF13181 TPR_8: Tetratricopept 76.4 3.2 7E-05 23.6 2.6 26 424-449 3-28 (34)
332 PF13762 MNE1: Mitochondrial s 75.8 42 0.00091 27.3 11.1 45 354-398 81-126 (145)
333 COG1747 Uncharacterized N-term 75.6 92 0.002 31.2 21.0 165 210-382 65-235 (711)
334 PF07163 Pex26: Pex26 protein; 74.9 43 0.00093 30.5 10.1 90 356-445 87-181 (309)
335 PRK15180 Vi polysaccharide bio 74.7 82 0.0018 31.1 12.5 118 294-415 301-419 (831)
336 PF13929 mRNA_stabil: mRNA sta 74.5 71 0.0015 29.4 17.5 65 243-307 199-263 (292)
337 PRK09687 putative lyase; Provi 72.1 84 0.0018 29.1 29.3 75 385-472 204-278 (280)
338 PF07721 TPR_4: Tetratricopept 71.8 6.2 0.00014 21.0 2.8 18 393-410 7-24 (26)
339 PF09477 Type_III_YscG: Bacter 71.5 43 0.00093 25.5 8.3 80 120-206 20-99 (116)
340 PF11768 DUF3312: Protein of u 70.8 59 0.0013 32.8 11.0 21 323-343 414-434 (545)
341 PF11663 Toxin_YhaV: Toxin wit 70.1 5.9 0.00013 31.4 3.3 32 188-221 107-138 (140)
342 TIGR02561 HrpB1_HrpK type III 69.7 60 0.0013 26.5 12.3 21 186-206 54-74 (153)
343 COG3947 Response regulator con 68.7 98 0.0021 28.6 13.5 59 286-345 283-341 (361)
344 PF13174 TPR_6: Tetratricopept 68.7 11 0.00023 21.0 3.6 20 326-345 9-28 (33)
345 PF13181 TPR_8: Tetratricopept 68.4 16 0.00035 20.5 4.3 27 389-415 3-29 (34)
346 PF14669 Asp_Glu_race_2: Putat 68.3 77 0.0017 27.2 13.2 86 212-307 108-206 (233)
347 KOG4648 Uncharacterized conser 67.8 28 0.0006 32.6 7.5 52 361-414 106-158 (536)
348 TIGR03504 FimV_Cterm FimV C-te 67.5 11 0.00025 23.3 3.6 25 182-206 5-29 (44)
349 KOG1464 COP9 signalosome, subu 67.2 99 0.0021 28.1 19.0 211 205-415 20-260 (440)
350 smart00028 TPR Tetratricopepti 67.0 11 0.00025 20.0 3.6 26 424-449 3-28 (34)
351 TIGR03504 FimV_Cterm FimV C-te 66.6 13 0.00028 23.0 3.7 25 467-491 5-29 (44)
352 KOG1920 IkappaB kinase complex 66.3 2.3E+02 0.0049 31.8 27.0 212 208-449 788-1026(1265)
353 COG2976 Uncharacterized protei 65.0 91 0.002 26.9 15.1 90 393-491 95-189 (207)
354 KOG2396 HAT (Half-A-TPR) repea 64.8 1.6E+02 0.0034 29.5 33.5 398 69-489 104-558 (568)
355 PF08424 NRDE-2: NRDE-2, neces 64.5 1.3E+02 0.0029 28.5 16.9 122 370-493 49-186 (321)
356 KOG4077 Cytochrome c oxidase, 64.4 42 0.00092 26.4 6.8 47 89-135 67-113 (149)
357 COG5187 RPN7 26S proteasome re 64.4 1.2E+02 0.0026 27.9 13.3 101 277-379 110-219 (412)
358 PF11846 DUF3366: Domain of un 64.2 35 0.00075 29.5 7.5 31 279-309 141-171 (193)
359 PF11838 ERAP1_C: ERAP1-like C 64.2 1.3E+02 0.0028 28.4 20.4 81 227-311 146-230 (324)
360 PHA02875 ankyrin repeat protei 63.4 1.1E+02 0.0023 30.3 11.8 213 115-351 8-229 (413)
361 KOG4234 TPR repeat-containing 63.3 1E+02 0.0022 26.8 9.6 89 360-449 103-195 (271)
362 KOG2066 Vacuolar assembly/sort 62.8 2.1E+02 0.0046 30.4 25.1 102 150-258 363-467 (846)
363 PF10366 Vps39_1: Vacuolar sor 62.6 69 0.0015 24.6 7.9 27 319-345 41-67 (108)
364 KOG1550 Extracellular protein 62.1 2E+02 0.0044 29.8 25.8 156 186-349 259-429 (552)
365 KOG0890 Protein kinase of the 61.6 3.8E+02 0.0082 32.8 27.4 316 149-493 1389-1734(2382)
366 COG1747 Uncharacterized N-term 61.3 1.9E+02 0.004 29.2 25.1 182 243-433 63-250 (711)
367 PF10579 Rapsyn_N: Rapsyn N-te 58.6 39 0.00085 24.1 5.3 19 425-443 46-64 (80)
368 KOG3807 Predicted membrane pro 58.6 65 0.0014 30.1 8.1 54 252-305 281-334 (556)
369 PF11848 DUF3368: Domain of un 58.5 44 0.00095 21.1 5.2 31 223-253 14-44 (48)
370 COG5108 RPO41 Mitochondrial DN 58.4 77 0.0017 32.7 9.2 75 357-432 33-113 (1117)
371 PF14689 SPOB_a: Sensor_kinase 57.8 15 0.00032 24.8 3.1 30 459-488 21-50 (62)
372 PRK11619 lytic murein transgly 57.2 2.6E+02 0.0057 29.6 32.9 113 226-343 256-372 (644)
373 PF04097 Nic96: Nup93/Nic96; 57.1 2.6E+02 0.0056 29.5 20.2 70 175-246 111-187 (613)
374 KOG0686 COP9 signalosome, subu 56.0 2E+02 0.0044 27.9 13.1 59 146-204 153-215 (466)
375 PF07575 Nucleopor_Nup85: Nup8 55.8 60 0.0013 33.8 8.7 57 285-343 408-464 (566)
376 KOG4507 Uncharacterized conser 55.4 1.3E+02 0.0027 30.8 10.0 87 295-382 620-706 (886)
377 cd08819 CARD_MDA5_2 Caspase ac 55.3 37 0.0008 24.7 4.8 14 225-238 50-63 (88)
378 cd00280 TRFH Telomeric Repeat 53.5 1.1E+02 0.0023 26.2 7.8 67 403-476 85-158 (200)
379 PF11846 DUF3366: Domain of un 53.2 64 0.0014 27.8 7.3 31 419-449 141-171 (193)
380 PF13762 MNE1: Mitochondrial s 53.0 1.3E+02 0.0027 24.6 12.1 79 391-474 43-128 (145)
381 PF11663 Toxin_YhaV: Toxin wit 52.3 22 0.00047 28.3 3.6 30 84-116 109-138 (140)
382 PF14689 SPOB_a: Sensor_kinase 51.6 38 0.00081 22.9 4.3 22 287-308 28-49 (62)
383 PF11768 DUF3312: Protein of u 51.5 2.8E+02 0.0061 28.3 11.9 22 252-273 414-435 (545)
384 KOG1586 Protein required for f 51.2 1.8E+02 0.004 26.0 21.3 19 328-346 165-183 (288)
385 PF13934 ELYS: Nuclear pore co 51.1 1.8E+02 0.0039 25.9 10.9 53 149-202 114-166 (226)
386 PF15469 Sec5: Exocyst complex 50.6 1.4E+02 0.003 25.5 8.8 27 475-501 153-179 (182)
387 PF11848 DUF3368: Domain of un 50.6 62 0.0014 20.4 5.2 13 405-417 20-32 (48)
388 KOG4642 Chaperone-dependent E3 49.7 2E+02 0.0042 25.9 10.9 118 327-448 20-143 (284)
389 smart00386 HAT HAT (Half-A-TPR 49.5 31 0.00067 18.8 3.3 28 475-502 1-28 (33)
390 KOG1114 Tripeptidyl peptidase 49.1 4E+02 0.0086 29.3 15.3 64 421-488 1230-1293(1304)
391 COG0735 Fur Fe2+/Zn2+ uptake r 48.6 1E+02 0.0022 25.1 7.3 64 92-158 7-70 (145)
392 COG0735 Fur Fe2+/Zn2+ uptake r 48.3 99 0.0021 25.3 7.1 63 197-260 7-69 (145)
393 PF10345 Cohesin_load: Cohesin 48.3 3.5E+02 0.0077 28.5 33.2 193 69-272 29-251 (608)
394 PF10475 DUF2450: Protein of u 47.6 1.7E+02 0.0036 27.4 9.5 110 287-407 103-217 (291)
395 PF14853 Fis1_TPR_C: Fis1 C-te 47.4 47 0.001 21.6 4.0 21 429-449 8-28 (53)
396 PF14853 Fis1_TPR_C: Fis1 C-te 47.0 52 0.0011 21.4 4.2 30 467-496 7-36 (53)
397 KOG0991 Replication factor C, 46.8 2.2E+02 0.0047 25.5 13.2 127 357-494 164-303 (333)
398 KOG0292 Vesicle coat complex C 45.9 1.6E+02 0.0034 31.8 9.3 100 251-378 625-724 (1202)
399 COG5108 RPO41 Mitochondrial DN 45.6 1.8E+02 0.004 30.2 9.5 45 148-192 33-81 (1117)
400 KOG4648 Uncharacterized conser 45.4 1.3E+02 0.0029 28.4 7.9 79 325-412 105-183 (536)
401 PF04090 RNA_pol_I_TF: RNA pol 45.1 2.1E+02 0.0045 24.9 9.6 28 213-240 43-70 (199)
402 PRK10564 maltose regulon perip 44.4 47 0.001 30.7 5.0 37 279-315 253-290 (303)
403 TIGR02508 type_III_yscG type I 44.3 1.4E+02 0.003 22.6 8.2 49 395-449 47-95 (115)
404 cd07153 Fur_like Ferric uptake 44.2 77 0.0017 24.5 5.8 48 75-123 5-52 (116)
405 KOG2066 Vacuolar assembly/sort 44.1 4.3E+02 0.0093 28.3 27.5 105 113-223 363-467 (846)
406 PRK14951 DNA polymerase III su 43.7 3.6E+02 0.0079 28.4 11.9 45 460-505 250-294 (618)
407 PRK10564 maltose regulon perip 43.3 50 0.0011 30.6 5.0 30 214-243 260-289 (303)
408 PF12862 Apc5: Anaphase-promot 42.5 96 0.0021 22.9 5.8 21 470-490 50-70 (94)
409 PF09868 DUF2095: Uncharacteri 42.4 1.1E+02 0.0023 23.6 5.7 40 111-153 66-105 (128)
410 KOG4507 Uncharacterized conser 41.8 1.9E+02 0.0042 29.6 8.9 99 329-429 619-717 (886)
411 KOG4521 Nuclear pore complex, 41.6 5.7E+02 0.012 29.0 14.3 153 291-449 929-1130(1480)
412 KOG0403 Neoplastic transformat 41.5 3.6E+02 0.0079 26.7 23.3 104 391-503 513-624 (645)
413 COG2178 Predicted RNA-binding 41.0 2.4E+02 0.0052 24.4 10.2 54 292-345 39-97 (204)
414 KOG0687 26S proteasome regulat 40.9 3.2E+02 0.0069 25.8 16.7 135 242-380 66-209 (393)
415 COG4003 Uncharacterized protei 40.8 1.1E+02 0.0023 21.9 5.1 36 111-149 36-71 (98)
416 COG5159 RPN6 26S proteasome re 40.5 3E+02 0.0065 25.4 12.8 49 288-336 9-64 (421)
417 PF06957 COPI_C: Coatomer (COP 40.4 1.3E+02 0.0028 29.7 7.6 53 440-496 281-335 (422)
418 PF10255 Paf67: RNA polymerase 39.8 3.8E+02 0.0082 26.4 13.0 63 247-309 123-191 (404)
419 PRK10941 hypothetical protein; 39.7 3.1E+02 0.0066 25.3 10.7 57 392-449 186-242 (269)
420 PHA02537 M terminase endonucle 39.7 2.8E+02 0.006 24.8 11.4 36 434-469 190-225 (230)
421 KOG0991 Replication factor C, 39.5 2.8E+02 0.0062 24.8 14.7 138 285-432 133-282 (333)
422 KOG2297 Predicted translation 39.5 3.2E+02 0.007 25.5 19.0 21 421-441 320-340 (412)
423 KOG3677 RNA polymerase I-assoc 39.2 2.3E+02 0.0049 27.7 8.6 152 247-399 236-396 (525)
424 PRK08691 DNA polymerase III su 38.8 5.2E+02 0.011 27.7 13.6 97 380-505 193-289 (709)
425 KOG1114 Tripeptidyl peptidase 38.6 5.8E+02 0.013 28.2 13.1 133 188-343 1159-1292(1304)
426 PF09670 Cas_Cas02710: CRISPR- 38.5 3.9E+02 0.0084 26.1 11.9 55 185-240 140-198 (379)
427 KOG4279 Serine/threonine prote 37.9 5.3E+02 0.012 27.6 12.0 26 468-493 373-398 (1226)
428 cd08326 CARD_CASP9 Caspase act 37.8 1.5E+02 0.0033 21.5 6.0 30 159-190 46-75 (84)
429 KOG0376 Serine-threonine phosp 37.8 84 0.0018 31.1 5.8 101 364-473 16-117 (476)
430 PF01475 FUR: Ferric uptake re 37.8 86 0.0019 24.5 5.2 48 74-122 11-58 (120)
431 PF12796 Ank_2: Ankyrin repeat 37.7 1.5E+02 0.0032 21.2 6.2 8 236-243 77-84 (89)
432 PF08424 NRDE-2: NRDE-2, neces 37.7 3.6E+02 0.0079 25.6 16.7 27 392-418 159-185 (321)
433 KOG2908 26S proteasome regulat 37.5 2.9E+02 0.0063 26.2 8.9 58 392-449 80-142 (380)
434 COG2909 MalT ATP-dependent tra 37.5 5.8E+02 0.013 27.9 27.1 300 197-503 332-662 (894)
435 TIGR02710 CRISPR-associated pr 37.5 2.9E+02 0.0062 26.9 9.3 24 361-384 139-162 (380)
436 PF02847 MA3: MA3 domain; Int 37.4 1.6E+02 0.0035 22.4 6.7 19 324-342 9-27 (113)
437 PF10475 DUF2450: Protein of u 36.7 3.6E+02 0.0077 25.2 10.9 113 180-304 102-219 (291)
438 PF09454 Vps23_core: Vps23 cor 36.7 1.4E+02 0.003 20.4 5.3 47 387-434 8-54 (65)
439 KOG3364 Membrane protein invol 36.6 2.3E+02 0.005 22.9 8.6 90 401-495 12-105 (149)
440 cd08326 CARD_CASP9 Caspase act 36.5 88 0.0019 22.7 4.5 34 224-261 43-76 (84)
441 PF12926 MOZART2: Mitotic-spin 36.3 1.7E+02 0.0037 21.4 5.7 42 372-413 28-69 (88)
442 PF09454 Vps23_core: Vps23 cor 35.9 75 0.0016 21.7 3.8 49 174-223 6-54 (65)
443 PF11838 ERAP1_C: ERAP1-like C 35.6 3.8E+02 0.0082 25.2 22.2 111 333-447 146-262 (324)
444 KOG3636 Uncharacterized conser 35.6 3.2E+02 0.0069 26.9 9.0 87 101-187 178-271 (669)
445 COG4259 Uncharacterized protei 35.6 1.9E+02 0.0042 21.7 6.2 59 404-468 54-112 (121)
446 PRK07003 DNA polymerase III su 35.1 6.2E+02 0.014 27.5 13.1 45 460-505 245-289 (830)
447 PF09986 DUF2225: Uncharacteri 35.0 2.5E+02 0.0054 24.8 8.0 23 470-492 174-196 (214)
448 PRK14700 recombination factor 34.7 3E+02 0.0064 25.8 8.5 45 75-120 128-175 (300)
449 KOG0292 Vesicle coat complex C 34.5 3.4E+02 0.0073 29.5 9.7 176 189-415 606-781 (1202)
450 PF10366 Vps39_1: Vacuolar sor 34.2 2.1E+02 0.0047 21.9 7.4 27 213-239 41-67 (108)
451 PF02607 B12-binding_2: B12 bi 34.1 86 0.0019 22.1 4.3 38 82-120 13-50 (79)
452 PF04190 DUF410: Protein of un 33.9 3.7E+02 0.0081 24.6 16.1 127 96-240 39-170 (260)
453 cd08819 CARD_MDA5_2 Caspase ac 33.8 1.9E+02 0.0041 21.2 6.4 13 366-378 50-62 (88)
454 KOG2908 26S proteasome regulat 32.7 2.6E+02 0.0056 26.5 7.7 60 152-211 84-155 (380)
455 PF06972 DUF1296: Protein of u 32.2 96 0.0021 20.6 3.6 12 518-529 33-44 (60)
456 TIGR03184 DNA_S_dndE DNA sulfu 32.1 1.5E+02 0.0032 22.7 5.2 29 263-291 5-34 (105)
457 KOG2168 Cullins [Cell cycle co 32.0 7E+02 0.015 27.1 14.5 20 430-449 630-649 (835)
458 PF08542 Rep_fac_C: Replicatio 31.2 1.4E+02 0.003 21.6 5.1 45 460-505 4-48 (89)
459 PRK11639 zinc uptake transcrip 30.8 1.2E+02 0.0026 25.6 5.2 59 98-159 18-76 (169)
460 PF02847 MA3: MA3 domain; Int 30.8 2.3E+02 0.005 21.6 6.5 20 358-377 8-27 (113)
461 KOG1258 mRNA processing protei 30.7 6.2E+02 0.013 26.1 31.6 370 81-475 90-489 (577)
462 KOG3807 Predicted membrane pro 30.7 4.7E+02 0.01 24.7 13.3 16 434-449 287-302 (556)
463 PF02184 HAT: HAT (Half-A-TPR) 30.5 25 0.00055 20.0 0.7 22 192-215 3-24 (32)
464 PF12862 Apc5: Anaphase-promot 30.4 2.2E+02 0.0049 20.9 7.1 16 257-272 52-67 (94)
465 KOG2297 Predicted translation 30.3 4.6E+02 0.01 24.6 16.8 68 330-407 268-341 (412)
466 COG5159 RPN6 26S proteasome re 30.1 4.5E+02 0.0098 24.4 15.7 55 252-307 9-70 (421)
467 PF03745 DUF309: Domain of unk 29.8 1.7E+02 0.0037 19.8 4.7 14 400-413 12-25 (62)
468 PF11817 Foie-gras_1: Foie gra 29.6 2.3E+02 0.0051 25.6 7.2 57 216-272 183-244 (247)
469 PF04190 DUF410: Protein of un 29.3 4.5E+02 0.0097 24.1 17.9 83 280-381 88-170 (260)
470 KOG4567 GTPase-activating prot 29.2 2.9E+02 0.0063 25.8 7.4 71 372-447 263-343 (370)
471 PRK13342 recombination factor 29.0 5.8E+02 0.013 25.3 17.9 22 225-246 244-265 (413)
472 PHA03100 ankyrin repeat protei 28.8 6.1E+02 0.013 25.5 15.7 13 93-105 50-62 (480)
473 PF07678 A2M_comp: A-macroglob 28.8 2.1E+02 0.0046 25.8 6.8 28 90-118 33-60 (246)
474 PRK07764 DNA polymerase III su 28.6 6.9E+02 0.015 27.5 11.5 32 381-414 195-226 (824)
475 PRK06645 DNA polymerase III su 28.1 6.7E+02 0.015 25.7 11.8 34 464-498 261-294 (507)
476 KOG0686 COP9 signalosome, subu 27.7 6E+02 0.013 25.0 14.6 95 177-273 151-256 (466)
477 PF11817 Foie-gras_1: Foie gra 27.6 4.6E+02 0.01 23.7 9.7 58 428-485 184-242 (247)
478 PF07443 HARP: HepA-related pr 27.3 30 0.00065 22.7 0.7 33 190-222 6-38 (55)
479 PF09868 DUF2095: Uncharacteri 27.2 2.4E+02 0.0052 21.8 5.4 25 217-241 67-91 (128)
480 PRK12356 glutaminase; Reviewed 27.1 5.4E+02 0.012 24.3 10.3 26 387-412 231-256 (319)
481 KOG2659 LisH motif-containing 27.1 4.5E+02 0.0098 23.4 8.6 102 381-486 20-128 (228)
482 PF08870 DUF1832: Domain of un 26.7 2.2E+02 0.0047 22.1 5.5 26 264-289 7-33 (113)
483 PRK13342 recombination factor 26.2 6.5E+02 0.014 24.9 18.1 32 295-326 243-274 (413)
484 KOG4521 Nuclear pore complex, 25.8 1E+03 0.022 27.1 14.9 154 80-234 930-1125(1480)
485 PF08870 DUF1832: Domain of un 25.7 2.4E+02 0.0051 21.9 5.5 29 228-256 6-36 (113)
486 PHA00425 DNA packaging protein 25.6 1.6E+02 0.0036 20.8 4.0 43 477-522 15-57 (88)
487 PRK10941 hypothetical protein; 25.2 5.4E+02 0.012 23.7 10.3 56 217-273 187-242 (269)
488 COG4003 Uncharacterized protei 25.2 1.3E+02 0.0027 21.6 3.5 27 287-313 36-62 (98)
489 PF13934 ELYS: Nuclear pore co 25.1 4.9E+02 0.011 23.2 11.5 125 354-496 78-204 (226)
490 PRK14700 recombination factor 25.0 5.8E+02 0.013 23.9 9.5 31 296-326 140-170 (300)
491 smart00804 TAP_C C-terminal do 24.8 60 0.0013 22.0 1.9 21 261-281 40-60 (63)
492 PF08311 Mad3_BUB1_I: Mad3/BUB 24.7 3.5E+02 0.0077 21.4 9.1 78 262-342 46-124 (126)
493 PF09477 Type_III_YscG: Bacter 24.7 3.3E+02 0.0071 21.0 8.0 76 226-309 21-96 (116)
494 PF09986 DUF2225: Uncharacteri 24.4 5E+02 0.011 22.9 11.3 59 391-449 122-192 (214)
495 KOG1498 26S proteasome regulat 24.2 6.8E+02 0.015 24.5 14.0 50 189-238 25-79 (439)
496 PF00244 14-3-3: 14-3-3 protei 24.1 5.3E+02 0.011 23.2 13.8 51 438-489 142-197 (236)
497 PF04090 RNA_pol_I_TF: RNA pol 24.1 4.8E+02 0.01 22.7 9.3 58 354-412 43-101 (199)
498 PF15297 CKAP2_C: Cytoskeleton 24.1 3.5E+02 0.0076 25.8 7.2 62 404-471 120-185 (353)
499 PRK09462 fur ferric uptake reg 24.0 2.5E+02 0.0053 23.0 5.8 32 89-120 35-66 (148)
500 PF10345 Cohesin_load: Cohesin 23.9 8.7E+02 0.019 25.6 33.3 23 466-488 582-604 (608)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-72 Score=603.86 Aligned_cols=472 Identities=17% Similarity=0.206 Sum_probs=421.8
Q ss_pred CCCCCCcc---ccccchhhhhhhhccCccceeeccccccccccc--------cccccccchHHHHHHHhccCCCCccHHH
Q 009424 24 PCKIPRCF---TRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVD--------FERRPMIKWNAIFRKLSLMDNPQLGSAS 92 (535)
Q Consensus 24 ~c~~~~~~---~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~n~li~~~~~~g~~~~~a~~ 92 (535)
.|...+.+ .++|+++++.+...+..+.+.++++|+++|++. ++.||+++||++|++|++.|+++ +|+.
T Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~-~A~~ 173 (857)
T PLN03077 95 LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD-EALC 173 (857)
T ss_pred HHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHH-HHHH
Confidence 35444433 489999999999888899999999999999987 44599999999999999999999 9999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC
Q 009424 93 VLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT 172 (535)
Q Consensus 93 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 172 (535)
+|++|.+.|+.||.+||++++++|++.++++.+.++|..+.+.| +.++..+++++|.+|+++|++++|+++|++|+.
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~- 250 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG--FELDVDVVNALITMYVKCGDVVSARLVFDRMPR- 250 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC--CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 009424 173 LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIW 252 (535)
Q Consensus 173 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~l 252 (535)
||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++|
T Consensus 251 -~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 251 -RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred -CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC
Q 009424 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK 332 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (535)
|.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 999999999999999999996 468889999999999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHh--------------------------------
Q 009424 333 KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS-------------------------------- 380 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------------------------------- 380 (535)
+++|.++++.|.+.|..++..+|++++++|++.|++++|.++|++|.+
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 888888877777777777767777777777777666666666665532
Q ss_pred ---------------------------------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 009424 381 ---------------------------------VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWET 427 (535)
Q Consensus 381 ---------------------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 427 (535)
.|+.+|..++++||++|+++|++++|.++|+.+ .||..+|++
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~ 559 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNI 559 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHH
Confidence 233333334445556666666666666666665 579999999
Q ss_pred HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh-cCCCCChh-hHHHHHHHh
Q 009424 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR-QPGYRKEK-DYMSLIGLT 505 (535)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~~~~~~~-~~~~L~~~y 505 (535)
||.+|+++|+.++|+++|++|. +.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+. +|++|+++|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~----~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMV----ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999999999999999 78999998 999999999
Q ss_pred Hhhhhcccc
Q 009424 506 DEAVAENNK 514 (535)
Q Consensus 506 ~~~~~~~~~ 514 (535)
+++|+.+++
T Consensus 636 ~r~G~~~eA 644 (857)
T PLN03077 636 GRAGKLTEA 644 (857)
T ss_pred HhCCCHHHH
Confidence 999999883
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.6e-71 Score=590.11 Aligned_cols=476 Identities=12% Similarity=0.106 Sum_probs=425.5
Q ss_pred CCCCCCCCCCcc---ccccchhhhhhhhccCccceeeccccccccccc--------cccccccchHHHHHHHhccCCCCc
Q 009424 20 TQPLPCKIPRCF---TRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVD--------FERRPMIKWNAIFRKLSLMDNPQL 88 (535)
Q Consensus 20 ~~~~~c~~~~~~---~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~n~li~~~~~~g~~~~ 88 (535)
+++..|.....+ +++|+++++.|...+.++.+.+|.+|+++|++. +++||+++||+||++|++.|+++
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~- 270 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL- 270 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHH-
Confidence 344456555444 599999999999999999999999999999987 45589999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
+|+++|++|.+.|+.||..||+.++++|++.|+++.|.++|..+.+.| +.++..+++.++.+|+++|++++|+++|++
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 009424 169 LPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~ 248 (535)
|.. ||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+
T Consensus 349 m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 349 MET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred CCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
|++||++|++.|++++|.++|+.|. .+|..+||++|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|+
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 9999999999999999999999997 35778888888888888888888888888874 47777777776666555
Q ss_pred hcCCHHHHHHHHHHHHhhCC------------------------------CCchhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFP------------------------------GVTNLGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~------------------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
+.|.++.+.+++..+.+.|. .+|..+|+++|.+|++.|+.++|.++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555444444444333 456778888888888899999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCC
Q 009424 379 LSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII-EEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSW 457 (535)
Q Consensus 379 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~ 457 (535)
.+.|+.||..+|+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|++++.+|++.|++++|.+++++|. +
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-------~ 653 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-------I 653 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-------C
Confidence 988999999999999999999999999999999998 57889999999999999999999999999988886 6
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 458 RPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 458 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+||..+|.+++.+|...|+.+.++.+.+++.+..+.....|..|.++|+..|+|++
T Consensus 654 ~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 654 TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 89999999999999999999999999989888888777789999999999999998
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-67 Score=552.77 Aligned_cols=427 Identities=15% Similarity=0.216 Sum_probs=413.6
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGR-SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDA 146 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 146 (535)
+|...|..++..+++.|+.. +|+++|++|.+.|+ .++..++..++.+|.+.|.+++|..++..|.. ++..+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Ty 440 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTF 440 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHH
Confidence 67888999999999999999 99999999999985 56888889999999999999999999988853 789999
Q ss_pred HHHHHHHHhhCCHhhHHHHHhhCCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhc
Q 009424 147 AIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224 (535)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 224 (535)
+.++.+|++.|+++.|.++|++|.+. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999876 7899999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD-KAVNPNWTTFSTMATMYIKMGQVEKAEE 303 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (535)
|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+. .++.||..+|++||.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999753 5789999999999999999999999999
Q ss_pred HHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC
Q 009424 304 SLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 383 (535)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|+++|++|...|..||..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHH
Q 009424 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVN 463 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~ 463 (535)
.||..+|+++|.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|. ..|+.||..|
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~----~~Gi~Pd~~T 756 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK----RLGLCPNTIT 756 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh-hHHHHHHHh
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKEK-DYMSLIGLT 505 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~L~~~y 505 (535)
|..++.+|.+.|++++|.+++++|.+.|+.|+. +|++|+.++
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999874
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-68 Score=556.30 Aligned_cols=448 Identities=13% Similarity=0.155 Sum_probs=386.9
Q ss_pred ceeeccccccccccc--------cccccccch-----HHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009424 50 IKCSMSQIHSYGTVD--------FERRPMIKW-----NAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKEL 116 (535)
Q Consensus 50 ~~~~~~~~~~~~~~~--------~~~~~~~~~-----n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (535)
...++..+.++|++. +.+++++.| +.++.+|.+.|... +|+.+|+.|.. ||..||+.++++|
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~-eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVK-EAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHH-HHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 344444555567765 333555544 45666788888888 89999988854 8999999999999
Q ss_pred HHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC--CCCHHHHHHHHHHHHHcCCHhH
Q 009424 117 RKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGN 194 (535)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 194 (535)
++.|+++.|.++|+.|.+.| +.++..+++.+|.+|+++|++++|.++|++|.+. .||.++||+||.+|++.|++++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAG--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999998 8889999999999999999999999999998865 5899999999999999999999
Q ss_pred HHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHh
Q 009424 195 AELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE--KGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELM 272 (535)
Q Consensus 195 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~ 272 (535)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 578899999999999999999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 009424 273 KVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN 352 (535)
Q Consensus 273 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 352 (535)
.+ .++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..|+.
T Consensus 606 ~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 86 58889999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999889999999999999999
Q ss_pred HccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh----c-------------------CChhhHHHHHHHHhc
Q 009424 433 IRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE----E-------------------SDMGSKEAFVALLRQ 489 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~ 489 (535)
++.|++++|.++|.+|. +.|+.||..+|+.++..|.+ . +..+.|..+|++|++
T Consensus 765 ~k~G~le~A~~l~~~M~----k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAK----EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHCCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999998 88999999999988876542 1 123678889999999
Q ss_pred CCCCChh-hHHHHHHHhHhhh
Q 009424 490 PGYRKEK-DYMSLIGLTDEAV 509 (535)
Q Consensus 490 ~~~~~~~-~~~~L~~~y~~~~ 509 (535)
.|+.|+. +|+.++..+.+.+
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccc
Confidence 9999888 8888887664443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-66 Score=538.91 Aligned_cols=427 Identities=17% Similarity=0.220 Sum_probs=324.5
Q ss_pred ccccccchHHHHHHHhccCCCCccHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHh
Q 009424 66 ERRPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGG-RSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSAS 144 (535)
Q Consensus 66 ~~~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 144 (535)
.+++.++||++|.+|.+.|++. +|+++|+.|...+ ..||..||+.++++|++.++++.|.++|..|.+.| +.++..
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~-~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g--~~~~~~ 159 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHR-EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG--FEPDQY 159 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCcchH
Confidence 3467889999999999999999 9999999998864 78999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHH--------
Q 009424 145 DAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNV-------- 216 (535)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------- 216 (535)
+++.++++|+++|++++|+++|++|++ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 999999999999999999999999998 9999999999999999999999999999988877776665554
Q ss_pred ---------------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHH
Q 009424 217 ---------------------------MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 217 ---------------------------li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~ 269 (535)
||++|++.|++++|.++|++|. ++|.++||++|.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555555555555553 235555555555555555555555555
Q ss_pred HHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 009424 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 349 (535)
++|.+ .|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+++|.+|++.|++++|.++|++|. .
T Consensus 314 ~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 314 YEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 55553 355566666666666666666666666666666555656666666666666666666666666666653 2
Q ss_pred CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCHhHHHHH
Q 009424 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE-EGGKPNSTSWETL 428 (535)
Q Consensus 350 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l 428 (535)
+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 455666666666666666666666666666666666766677777777666777777777766654 4666666667777
Q ss_pred HHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 429 AEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
+.+|++.|++++|.+++++|. +.||..+|++++.+|...|+++.|+++++++.+.++....+|..|+++|++.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~-------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAP-------FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 777777777777766665543 6788888888888888888888888888888877776666899999999999
Q ss_pred hhccc
Q 009424 509 VAENN 513 (535)
Q Consensus 509 ~~~~~ 513 (535)
|+|++
T Consensus 542 G~~~~ 546 (697)
T PLN03081 542 GRQAE 546 (697)
T ss_pred CCHHH
Confidence 99887
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.1e-65 Score=531.19 Aligned_cols=460 Identities=13% Similarity=0.174 Sum_probs=418.3
Q ss_pred CCCCCCCCCCcc---ccccchhhhhhhhccCccceeeccccccccccc--------cccccccchHHHHHHHhccCCCCc
Q 009424 20 TQPLPCKIPRCF---TRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVD--------FERRPMIKWNAIFRKLSLMDNPQL 88 (535)
Q Consensus 20 ~~~~~c~~~~~~---~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~n~li~~~~~~g~~~~ 88 (535)
.++..|...+.+ .++|..+.+.|+.++....+.++.+|+++|.++ ++.||+++||++|++|++.|+++
T Consensus 128 ~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~- 206 (697)
T PLN03081 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYR- 206 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHH-
Confidence 344445555444 599999999999999999999999999999987 44589999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
+|+++|++|.+.|+.||..||..++++|++.|..+.+.++|..+.+.| +.++..++++++++|+++|++++|.++|++
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 009424 169 LPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~ 248 (535)
|+. +|+++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+
T Consensus 285 m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 285 MPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred CCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 998 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
|++|+++|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||.+||++++.+|+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999997 47999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHh-hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 329 SVGKKEEVYRVWNLYRS-VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
+.|++++|.++|+.|.+ .+..|+..+|++++++|++.|++++|.+++++| +..|+..+|++|+.+|+..|+++.|.
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999986 589999999999999999999999999998865 67899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHH-------HHHHhc----C
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFF-------KACEEE----S 475 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll-------~a~~~~----g 475 (535)
.+++++.+.++. +..+|..|+..|++.|++++|.++++.|. +.|+++.+ .+|..+- .....+ .
T Consensus 515 ~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~----~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 515 LAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLK----RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHH----HcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 999999764332 57899999999999999999999999999 78876432 2332211 000001 1
Q ss_pred ChhhHHHHHHHHhcCCCCChhh
Q 009424 476 DMGSKEAFVALLRQPGYRKEKD 497 (535)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~~~~ 497 (535)
-++...++..+|.+.|..|+..
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc
Confidence 2456677888899999988763
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.7e-26 Score=252.61 Aligned_cols=425 Identities=9% Similarity=0.021 Sum_probs=327.3
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
+...|+.+...|...|+++ +|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 538 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLA-KAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID---PKNLRAILA 538 (899)
T ss_pred CcHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHH
Confidence 4556777777777777777 7777777776632 2234455566677777777888888887777664 445667777
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCCh
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 227 (535)
+...|.+.|+.++|...|+++... +.+...+..+...|.+.|++++|..+++++.+.. +.+..+|..+...+.+.|++
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 777777888888888888776554 3456677778888888888888888888877643 45667788888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
++|...|+.+.+.. +.+...+..+..++.+.|++++|..+++.+.+. .+.+..++..++..+...|++++|.++++.
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888887764 345667777888888888888888888888753 255677888888888888888888888888
Q ss_pred HHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH
Q 009424 308 VESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP 387 (535)
Q Consensus 308 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 387 (535)
+.+..+ .+...+..+...+...|++++|+..|+.+....+.. .++..+..++.+.|+.++|.+.++.+.+..+. +.
T Consensus 695 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~ 770 (899)
T TIGR02917 695 LQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DA 770 (899)
T ss_pred HHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 876543 456677778888888889999999998888765444 56677888888899999999988888876544 77
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ 466 (535)
.++..+...|.+.|+.++|...|+++.+..+. +...++.+...+...|+ ++|+++++++.+ ..| +..++..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~------~~~~~~~~~~~ 842 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALK------LAPNIPAILDT 842 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHh------hCCCCcHHHHH
Confidence 88888889999999999999999998886543 78888888899999888 889999999882 334 3456667
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccc
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNK 514 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~ 514 (535)
+..++...|++++|.++++++++.++....++..+...|.+.|+.+++
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 777888999999999999999999887666888899999887766553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.2e-25 Score=245.85 Aligned_cols=425 Identities=9% Similarity=0.007 Sum_probs=217.0
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
+...|+.+...+.+.|+++ +|..+|+++.+. .| +...+..+...+...|++++|.+.++.+.+.. +.......
T Consensus 362 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~ 435 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFE-KAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLD---PELGRADL 435 (899)
T ss_pred CHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC---CcchhhHH
Confidence 3445666666666666666 666666666553 22 33344455555555566666666666555543 11223333
Q ss_pred HHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC
Q 009424 148 IQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 226 (535)
.++..|.+.|++++|..+++.+... +.+..+|+.+...|.+.|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCC
Confidence 4445555555555555555555443 2344556666666666666666666666555432 2233444555555555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLR 306 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 306 (535)
+++|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|..+++++.+.. +.+...+..++..|.+.|++++|..+++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555543 2244455555555555555555555555554321 3344445555555555555555555555
Q ss_pred HHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 307 RVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
.+.+.. +.+...|..+..+|...|++++|+..|+.+....+. +...+..+...+...|++++|...++.+.+..+. +
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 668 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPD-N 668 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Confidence 554322 233445555555555555555555555555543222 2234445555555555555555555555543322 3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVIN 466 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ 466 (535)
...+..+...+...|++++|.++++.+.+.+.. +...+..+...+...|++++|++.|+++. ...|+..++..
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~ 741 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKAL------KRAPSSQNAIK 741 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHH------hhCCCchHHHH
Confidence 445555555555555555555555555544322 44444455555555555555555555555 12233344444
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+..++.+.|++++|.+.++.+.+..+.....+..+...|...|+..+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 44444445555555555554444444433344444444444444333
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.3e-21 Score=190.58 Aligned_cols=299 Identities=12% Similarity=0.047 Sum_probs=159.2
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCCH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD---VYSYNIWLSSCGSQGST 262 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd---~~~~~~ll~~~~~~g~~ 262 (535)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555555555555542 22334555555555555555555555555554321111 13345555555556666
Q ss_pred hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc----chHHHHHHHHHhcCCHHHHHH
Q 009424 263 EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR----VPYHYLLSLYGSVGKKEEVYR 338 (535)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~ 338 (535)
+.|..+|+.+.+. -+.+..+++.++..|.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|+.
T Consensus 124 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666655532 1334455555666666666666666666665543322211 123344445555666666666
Q ss_pred HHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 339 VWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
.|+++.+..+. +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 66665554322 123444555566666666666666666654433222344556666666666666666666666553
Q ss_pred CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHhcCCCCCh
Q 009424 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE---ESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
.|+...+..++..+.+.|++++|.++++++. ...|+..++..++..+.. .|+.+++..+++++.+.++.++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l------~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQL------RRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH------HhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 2344444556666666666666666666665 234666666655554443 3456666666666665544444
Q ss_pred h
Q 009424 496 K 496 (535)
Q Consensus 496 ~ 496 (535)
+
T Consensus 353 p 353 (389)
T PRK11788 353 P 353 (389)
T ss_pred C
Confidence 3
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.8e-21 Score=191.42 Aligned_cols=310 Identities=14% Similarity=0.099 Sum_probs=247.1
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC---cchHHHHHHHHHhcCCh
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLK-DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH---SLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~ 227 (535)
.+...|++++|...|.++.+..| +..+|..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45667888888888888876634 556888898999999999999999999887542221 24678888899999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998763 456788899999999999999999999998864211111 22456677888899999999999
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
|+++.+... .+...+..+...|.+.|++++|+++|+++....+.....++..++.+|...|++++|...++.+.+..
T Consensus 203 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 203 LKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 999876432 23557778889999999999999999999886555444678889999999999999999999998764
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---cccHHHHHHHHHHhHHhccCCCCCCCH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR---ERRILEALSCLKGAFAAEGAKSWRPKP 461 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~g~~p~~ 461 (535)
|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.++++.++++|. +.+++|++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~----~~~~~~~p 353 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV----GEQLKRKP 353 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH----HHHHhCCC
Confidence 45566788999999999999999999998875 5888899988887764 568999999999999 66777776
Q ss_pred HHHHHHHHHHHhcCCh
Q 009424 462 VNVINFFKACEEESDM 477 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~ 477 (535)
. .+|.+.|..
T Consensus 354 ~------~~c~~cg~~ 363 (389)
T PRK11788 354 R------YRCRNCGFT 363 (389)
T ss_pred C------EECCCCCCC
Confidence 6 236555543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=4.2e-18 Score=175.83 Aligned_cols=329 Identities=9% Similarity=-0.040 Sum_probs=194.4
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHH
Q 009424 109 LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYV 187 (535)
Q Consensus 109 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~ 187 (535)
...++..+.+.|+++.|..+++.++... +-+......++......|++++|...|+++... +.+...|..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~---p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA---KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC---CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4455666777777777777777777664 333444444445555567777777777766555 334556666666667
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
+.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 7777777777777666542 223455666666677777777777777666554322 22222222 23556677777777
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHH----HHHHHHHH
Q 009424 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEE----VYRVWNLY 343 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m 343 (535)
.++.+.+.. -.++...+..+...+.+.|++++|...|++..+..+ .+...+..+...|...|++++ |+..|++.
T Consensus 199 ~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 199 LARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 766665421 112233344445566666777777777776665432 234455566666666666664 56666666
Q ss_pred HhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-
Q 009424 344 RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS- 422 (535)
Q Consensus 344 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 422 (535)
....+. +...+..+...+...|++++|...+++..+..+. +...+..+..+|.+.|++++|...|+++.+.+ |+.
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 664433 2345666666666667777777776666655433 44555566666666777777777766666542 232
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+..+...+...|+.++|++.|+++.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223334455666667777777776666
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=5e-18 Score=187.27 Aligned_cols=415 Identities=11% Similarity=0.016 Sum_probs=296.4
Q ss_pred HHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHh------------
Q 009424 78 RKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSAS------------ 144 (535)
Q Consensus 78 ~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------ 144 (535)
..+...|+++ +|+..|++.++ ..| +...+..+...+.+.|++++|+..|+..++...... ...
T Consensus 277 ~~~~~~g~~~-~A~~~l~~aL~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~-~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 277 LAAVDSGQGG-KAIPELQQAVR--ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS-NRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHCCCHH-HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-chhHHHHHHHhhhHH
Confidence 4456678888 88888888877 344 667777888888888999999998888887652111 111
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 145 DAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
........+.+.|++++|+..|++.... +.+...+..+...|.+.|++++|++.|++..+.. +.+...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 1112244567888889999888887766 3456677788888888899999999998888753 234455666666664
Q ss_pred cCChhHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc
Q 009424 224 IKEYDEVESMVSEMKEKGIR--------LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM 295 (535)
Q Consensus 224 ~g~~~~a~~~~~~m~~~g~~--------pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 295 (535)
.++.++|+.+++.+...... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...|.+.
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 45778888877665332100 011234456667788999999999999988642 44567788888899999
Q ss_pred CCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---------hhHHHHHHHHHhcC
Q 009424 296 GQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN---------LGYHAMISSLARIG 366 (535)
Q Consensus 296 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---------~~~~~ll~~~~~~g 366 (535)
|++++|...|+++.+..+ .+...+..+...+...++.++|+..++.+......++. ..+......+...|
T Consensus 509 G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 999999999999876432 23334444555667788999999988876432221111 11234566788899
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 446 (535)
+.++|.++++. .+.++..+..+...|.+.|++++|+..|++..+..+. +...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998872 2336667788899999999999999999999986554 68889999999999999999999999
Q ss_pred HhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh-----h-hHHHHHHHhHhhhhccc
Q 009424 447 GAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKE-----K-DYMSLIGLTDEAVAENN 513 (535)
Q Consensus 447 ~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~-~~~~L~~~y~~~~~~~~ 513 (535)
... ...|+ ..++..+..++...|++++|.++++.+++..+..+ . .+..+..+|...|+..+
T Consensus 662 ~ll------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 662 KLP------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred HHh------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 887 34554 34556667788889999999999999987654322 1 45555666665555555
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=1.9e-17 Score=182.63 Aligned_cols=434 Identities=12% Similarity=0.031 Sum_probs=278.2
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHccChHHHHHHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWEL-----------------CRVVKELRKFRRYKHALEVYDW 131 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~-----------------~~ll~~~~~~~~~~~a~~~~~~ 131 (535)
|...+..++..+.+.|+.+ +|...++++.+. .|+...+ ....+.+...|++++|++.|+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~-~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSD-GAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5566788888889999999 999999998874 4544332 2223457788999999999999
Q ss_pred HHhcCCCcccCHhHH-HHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--
Q 009424 132 MNNRGERFRLSASDA-AIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGY-- 207 (535)
Q Consensus 132 ~~~~g~~~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-- 207 (535)
+.+.. +++.... ..........|+.++|.+.++++... +.+...+..+...+.+.|+.++|++.|+++....-
T Consensus 138 ~l~~~---p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 138 LFNGA---PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HccCC---CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 88765 2222211 11112223458899999999988876 44567788888888889999999999988754320
Q ss_pred ----------------C--------------cCcchH---------------------HHHHHHHHhcCChhHHHHHHHH
Q 009424 208 ----------------A--------------VHSLPY---------------------NVMMTLYMKIKEYDEVESMVSE 236 (535)
Q Consensus 208 ----------------~--------------p~~~~~---------------------~~li~~~~~~g~~~~a~~~~~~ 236 (535)
. |+.... ......+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 110000 0113345677899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHH
Q 009424 237 MKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS------------TMATMYIKMGQVEKAEES 304 (535)
Q Consensus 237 m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~ 304 (535)
.++.. +.|...+..+..++.+.|++++|+..|++..+...-.++...|. .....+.+.|++++|...
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88864 33777888888899999999999999998875321111222222 223456788999999999
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHH---------------------------
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA--------------------------- 357 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--------------------------- 357 (535)
|++..+..+ .+...+..+...+...|++++|++.|++..+..+... ..+..
T Consensus 374 ~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 374 YQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 999877532 3455677788888999999999999998887544422 11111
Q ss_pred ---------------HHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 009424 358 ---------------MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS 422 (535)
Q Consensus 358 ---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 422 (535)
+...+...|++++|.+.+++.++..+. ++..+..+...|.+.|++++|...|+++.+.... +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 223345678899999999988877654 6777888888999999999999999988764332 33
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhHHhcc------------------------C-----------CCCCCCHHHHHHH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAFAAEG------------------------A-----------KSWRPKPVNVINF 467 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------------~-----------~g~~p~~~~~~~l 467 (535)
..+..+...+...++.++|+..++.+..... . ....++...+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 3332222223333444444333332210000 0 0011222334444
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
...+.+.|++++|...+++.++..+.....+..+..+|...|+.++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4555556666666666666666555544455555666655555544
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=7.4e-17 Score=167.18 Aligned_cols=397 Identities=10% Similarity=-0.008 Sum_probs=279.4
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHH
Q 009424 75 AIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIA 154 (535)
Q Consensus 75 ~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~ 154 (535)
..-..+.+.|+++ .|+..|++... ..|+...|..+..++...|++++|++.+...++.. +.+...+..+..+|.
T Consensus 132 ~~G~~~~~~~~~~-~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 132 EKGNKAYRNKDFN-KAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD---PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 4445667778888 88888888776 56777777788888888888888888888888775 445667777888888
Q ss_pred hhCCHhhHHHHHhhCCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHH------------------
Q 009424 155 KVHGVASAEDFFLSLPDTL-KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYN------------------ 215 (535)
Q Consensus 155 ~~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~------------------ 215 (535)
..|++++|...|....... .+......++..+.. ..+.....+..+.. +++..++.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhh
Confidence 8888888887765443211 111111111111111 01111111111110 01111111
Q ss_pred ---------------HHHHHH---HhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 216 ---------------VMMTLY---MKIKEYDEVESMVSEMKEKG-IRL-DVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 216 ---------------~li~~~---~~~g~~~~a~~~~~~m~~~g-~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
.+...+ ...+++++|.+.|+...+.+ ..| +...+..+...+...|++++|...++...+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 111000 12367889999999998865 233 4556777788888999999999999998853
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhH
Q 009424 276 KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 276 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
. +.+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|+..|++.....+. +...+
T Consensus 361 ~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~ 436 (615)
T TIGR00990 361 D--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH 436 (615)
T ss_pred C--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence 2 3346688888999999999999999999987653 235678888899999999999999999999886544 33567
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh------HHHHHH
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNST------SWETLA 429 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li 429 (535)
..+...+.+.|++++|...++..++..+. +...++.+...+...|++++|.+.|++..+.....+.. .++...
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 77888899999999999999998876433 67889999999999999999999999988753321111 122222
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
..+...|++++|.++++++. .+.|+. ..+..+...+...|++++|.+.+++..+....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl------~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKAL------IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33344689999999999988 244544 46788888999999999999999999877554
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.1e-17 Score=170.74 Aligned_cols=333 Identities=11% Similarity=0.022 Sum_probs=270.4
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHH
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLI 153 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~ 153 (535)
--++..+.+.|++. +|+.++...+.....+ ...+..++.++...|++++|.+.++.+.+.. +.+...+..+...+
T Consensus 46 ~~~~~~~~~~g~~~-~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---P~~~~a~~~la~~l 120 (656)
T PRK15174 46 ILFAIACLRKDETD-VGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN---VCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHhcCCcc-hhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHH
Confidence 34677888999999 9999999998854333 3445556677778999999999999999886 55677788889999
Q ss_pred HhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHH
Q 009424 154 AKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVES 232 (535)
Q Consensus 154 ~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 232 (535)
...|++++|...|++.... +.+...|..+...+.+.|++++|...++.+....- .+...+..+ ..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998776 45678899999999999999999999998876532 223334333 45788999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 009424 233 MVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK----AEESLRRV 308 (535)
Q Consensus 233 ~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m 308 (535)
.++.+.+....++...+..+..++...|++++|...++...+.. +.+...+..+...|.+.|++++ |...|++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99999887544455566666788899999999999999998642 5567888999999999999986 89999998
Q ss_pred HhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH
Q 009424 309 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR 388 (535)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 388 (535)
.+..+ .+...+..+...+.+.|++++|+..+++.....+.. ...+..+..++.+.|++++|...++.+.+..+. +..
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chH
Confidence 77432 245688899999999999999999999999865553 355677889999999999999999999876543 334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
.+..+..++...|+.++|...|++..+..+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 445567788999999999999999987543
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=2.3e-17 Score=174.06 Aligned_cols=411 Identities=8% Similarity=-0.026 Sum_probs=307.8
Q ss_pred HHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhh
Q 009424 77 FRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKV 156 (535)
Q Consensus 77 i~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~ 156 (535)
+......|+.. +|+.++.+.... -..+...+..+..++...|++++|.++++..++.. +.+......+...+...
T Consensus 22 ~~ia~~~g~~~-~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 22 LQIALWAGQDA-EVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE---PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHcCCHH-HHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHC
Confidence 44556789999 999999998762 23455568889999999999999999999999875 45566777888899999
Q ss_pred CCHhhHHHHHhhCCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHH
Q 009424 157 HGVASAEDFFLSLPDTL-KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVS 235 (535)
Q Consensus 157 g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 235 (535)
|+.++|...+++..... .+.. |..+...+...|+.++|+..+++..+.. +.+...+..+...+...+..++|++.++
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999987763 4556 8889999999999999999999999874 3345566777888888999999999887
Q ss_pred HHHHcCCCCCH------HHHHHHHHHHh-----cCCCH---hHHHHHHHHhHhCCCCCCCHH-HH----HHHHHHHHhcC
Q 009424 236 EMKEKGIRLDV------YSYNIWLSSCG-----SQGST---EKMEGVFELMKVDKAVNPNWT-TF----STMATMYIKMG 296 (535)
Q Consensus 236 ~m~~~g~~pd~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~-~~----~~li~~~~~~g 296 (535)
.... .|+. .....++.... ..+++ ++|+..++.+.+...-.|+.. .+ ...+..+...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6554 2221 11222222222 22234 778888888885322233321 11 11133456779
Q ss_pred CHHHHHHHHHHHHhcccC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhhHHHHHHHHHhcCCHhhHH
Q 009424 297 QVEKAEESLRRVESRITG-RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV---TNLGYHAMISSLARIGDIEGME 372 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~ 372 (535)
++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+..|+++....+.. .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999876532 322 12225678999999999999999987654332 1234566777889999999999
Q ss_pred HHHHHHHhcCC-----------CCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH
Q 009424 373 KIFEEWLSVKS-----------SYD---PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438 (535)
Q Consensus 373 ~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 438 (535)
++++.+.+..+ .|+ ...+..+...+...|+.++|+++++++....+. +...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 99999886532 123 234567788899999999999999999886544 688899999999999999
Q ss_pred HHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh--hHHHHHHHh
Q 009424 439 LEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK--DYMSLIGLT 505 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~L~~~y 505 (535)
++|++.++++. .+.||. ..+......+...|++++|+.+++++++..+.... .+.-..+.+
T Consensus 410 ~~A~~~l~~al------~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~~~ 473 (765)
T PRK10049 410 RAAENELKKAE------VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARDVH 473 (765)
T ss_pred HHHHHHHHHHH------hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 99999999999 566875 45556666888999999999999999998888766 344444444
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=7.1e-18 Score=159.08 Aligned_cols=381 Identities=12% Similarity=0.074 Sum_probs=315.1
Q ss_pred CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHH
Q 009424 105 TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLN 184 (535)
Q Consensus 105 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~ 184 (535)
-..+|+-+...+-..|++..|+..+..+++.. +.....+..+..++...|+.+.|...|.+..+..|+.+...+-+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~---p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK---PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC---chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 56788889999999999999999999999876 455677888888999999999999999988877677665544443
Q ss_pred -HHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCH
Q 009424 185 -AYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD-VYSYNIWLSSCGSQGST 262 (535)
Q Consensus 185 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~g~~ 262 (535)
.....|++++|...|.+..+.. +-=.+.|+.|...+-..|+...|+..|++.++.+ |+ ...|-.|-..|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcc
Confidence 4445799999999998887753 2236789999999999999999999999988764 33 45677888889999999
Q ss_pred hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 009424 263 EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 341 (535)
+.|...+....... +....++..|...|...|.+|.|++.+++..+ ..|+ ...|+.|..++-..|++.+|.+.|+
T Consensus 269 d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred hHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999998887432 34566788888889999999999999999876 3455 5589999999999999999999999
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009424 342 LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN 421 (535)
Q Consensus 342 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 421 (535)
+.....+... ...+.|...+...|.+++|..+|....+..+. -....+.|...|-..|++++|...+++... ++|+
T Consensus 345 kaL~l~p~ha-dam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 345 KALRLCPNHA-DAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHhCCccH-HHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 9988654432 56788999999999999999999988765433 345778899999999999999999999886 5665
Q ss_pred -HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHH
Q 009424 422 -STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYM 499 (535)
Q Consensus 422 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 499 (535)
...|+.+...|-..|+.+.|++.+.+++ .+.|.. ..++.|...+...|++.+|.+-++..++..++.+..|-
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAI------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHH------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 6789999999999999999999999999 567764 47888889999999999999999999999988777555
Q ss_pred HHHHHh
Q 009424 500 SLIGLT 505 (535)
Q Consensus 500 ~L~~~y 505 (535)
.|....
T Consensus 495 Nllh~l 500 (966)
T KOG4626|consen 495 NLLHCL 500 (966)
T ss_pred HHHHHH
Confidence 444444
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.1e-16 Score=165.95 Aligned_cols=392 Identities=11% Similarity=-0.029 Sum_probs=283.3
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHH
Q 009424 109 LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYV 187 (535)
Q Consensus 109 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~ 187 (535)
+......+.+.|+++.|+..|+..++.. ++...+..+..+|.+.|++++|.+.++...+. +.+...|..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~----p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK----PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4455667888899999999999998765 35667888888999999999999999988776 345678999999999
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHH--------------
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI--RLDVYSYNI-------------- 251 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~pd~~~~~~-------------- 251 (535)
..|++++|+.-|......+- .+......++..+... .+........+... .|.......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 99999999998877655431 1111122222222111 11111111111110 001000000
Q ss_pred -------------HHHH------HhcCCCHhHHHHHHHHhHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009424 252 -------------WLSS------CGSQGSTEKMEGVFELMKVDKAVNP-NWTTFSTMATMYIKMGQVEKAEESLRRVESR 311 (535)
Q Consensus 252 -------------ll~~------~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 311 (535)
++.. ....+++++|.+.|+.........| +...|+.+...+...|++++|...|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0100 1223678899999999885332233 4567888889999999999999999998764
Q ss_pred ccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHH
Q 009424 312 ITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390 (535)
Q Consensus 312 g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 390 (535)
.|+ ...|..+...+...|++++|+..|++.....+. +...|..+...+...|++++|...|++.++..+. +...+
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~ 436 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH 436 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence 454 457888889999999999999999999886444 3467888999999999999999999999887654 67778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC-CCCCCHH-HHHHHH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK-SWRPKPV-NVINFF 468 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-g~~p~~~-~~~~ll 468 (535)
..+...+.+.|++++|+..|++..+..+. +...|+.+...+...|++++|++.|+++.+..+.. +..++.. .+...+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 88999999999999999999999875433 67889999999999999999999999999322110 0111111 111122
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccc
Q 009424 469 KACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNK 514 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~ 514 (535)
..+...|++++|.+++++.++..+.....+..|...|...|+.+++
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 2334469999999999999998877766889999999888887773
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.1e-17 Score=157.92 Aligned_cols=418 Identities=12% Similarity=0.059 Sum_probs=330.5
Q ss_pred hHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHH
Q 009424 73 WNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152 (535)
Q Consensus 73 ~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~ 152 (535)
-..|..-.-+.|++. +|.+--+..-++ -..+..+...+-..+....+++...+--...++.. +.-...+..+.+.
T Consensus 51 ~l~lah~~yq~gd~~-~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~---~q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYK-QAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN---PQGAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHH-HHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc---chHHHHHHHHHHH
Confidence 345556667788888 887754443322 11122222233334455555555544444444443 4456788889999
Q ss_pred HHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHH-HHHHHhcCChhHH
Q 009424 153 IAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVM-MTLYMKIKEYDEV 230 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a 230 (535)
+-..|++++|..+++.+.+. +..+..|..+..++...|+.+.|.+.|.+..+.+ |+.....+- ...+-..|++++|
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchh
Confidence 99999999999999998887 4467899999999999999999999999988763 655544443 3444457999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 231 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
...|.+..+.. +--.+.|+.|-..+-..|+.-.|++.|++..+ +.|+ ...|-.|...|...+.+++|...+.+..
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99998888763 22356788888888999999999999999985 3555 4578889999999999999999999876
Q ss_pred hcccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH
Q 009424 310 SRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR 388 (535)
Q Consensus 310 ~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 388 (535)
. ..|+ .+.+..+...|...|.++-|+..|++..+..+.-. ..|+.+..++-..|++.+|.+.+...+..... ...
T Consensus 280 ~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-had 355 (966)
T KOG4626|consen 280 N--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HAD 355 (966)
T ss_pred h--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHH
Confidence 5 3454 55777788889999999999999999988655433 68999999999999999999999999876544 567
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVIN 466 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ 466 (535)
..+.|...|...|.+++|..+|....+. .|. ...++.|...|-++|++++|+..|+++. .++|+. ..|+.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal------rI~P~fAda~~N 427 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL------RIKPTFADALSN 427 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH------hcCchHHHHHHh
Confidence 7888999999999999999999998874 344 5678899999999999999999999999 789986 47888
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+-..+...|+++.|.+.+.+.+..++.-....+.|...|..+|.-.+
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHH
Confidence 88899999999999999999998888777788999999987777666
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.8e-16 Score=167.26 Aligned_cols=395 Identities=8% Similarity=0.002 Sum_probs=298.2
Q ss_pred CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHH
Q 009424 103 SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGA 181 (535)
Q Consensus 103 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~ 181 (535)
..++.-..-.+......|+.++|++++....... +.+...+..+...+.+.|++++|..+|++.... +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455556677888899999999999999988643 556667889999999999999999999997665 356778889
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 182 LLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 182 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
+...+.+.|++++|+..+++..+.. +.+.. |..+...+...|+.++|+..++++.+... .+...+..+..++...|.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998873 34455 88888999999999999999999999753 355666677888888999
Q ss_pred HhHHHHHHHHhHhCCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-ccCCCcc-hHH----
Q 009424 262 TEKMEGVFELMKVDKAVNPNW------TTFSTMATMYI-----KMGQV---EKAEESLRRVESR-ITGRDRV-PYH---- 321 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~~---- 321 (535)
.+.|.+.++...+ .|+. .....++..+. ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 166 ~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 SAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred hHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 9999999987763 2331 11222222222 22334 7788889888754 1223322 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC---CHHHHHHHHHHHH
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY---DPRIANLMMSWYV 398 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~ 398 (535)
..+.++...|+.++|+..|+.+...++..+......+..++...|++++|...++.+.+..... .......+..++.
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 1134556779999999999999887543222233345778999999999999999987654321 1345666777889
Q ss_pred HcCChhHHHHHHHHHHHcCC-----------CCC---HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHH
Q 009424 399 KEGNFDKAEAFFNSIIEEGG-----------KPN---STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVN 463 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~ 463 (535)
..|++++|..+++.+.+..+ .|+ ...+..+...+...|+.++|+++++++. ...| +...
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al------~~~P~n~~l 395 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA------YNAPGNQGL 395 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHH
Confidence 99999999999999987532 123 2345667788899999999999999999 2344 4567
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+..+...+...|++++|++.+++.++..|.....+..+...+...+++.+
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 77888889999999999999999999988776666667777777777766
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=9.3e-16 Score=138.88 Aligned_cols=415 Identities=14% Similarity=0.151 Sum_probs=290.2
Q ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccC--hH-HHHHHHHHHHhcCCCcccCHhHH
Q 009424 70 MIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRR--YK-HALEVYDWMNNRGERFRLSASDA 146 (535)
Q Consensus 70 ~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~-~a~~~~~~~~~~g~~~~~~~~~~ 146 (535)
+++=|.|+.. ..+|... ++.-+|+.|.+.|+..++..-..+++.-+-.+. .- .-.+.|-.|.+.| +.+..+
T Consensus 116 V~~E~nL~km-IS~~EvK-Ds~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~---E~S~~s- 189 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVK-DSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG---EDSTSS- 189 (625)
T ss_pred hcchhHHHHH-Hhhcccc-hhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc---cccccc-
Confidence 4556666654 3456677 788888888888887777766666554432221 11 1123333344443 111111
Q ss_pred HHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC
Q 009424 147 AIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 226 (535)
.+.|++.+ -+|+..+ ++..+|.+||.+.++--..+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 190 -------WK~G~vAd--L~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 190 -------WKSGAVAD--LLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred -------cccccHHH--HHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 23454443 5666666 478899999999999999999999999999888888999999999765433
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH----HHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHH-H
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM----EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK-A 301 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A 301 (535)
...++..+|....+.||..|+|+++++.++.|+++.| .+++.+|++ -|+.|...+|..+|..+.+.++..+ |
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhh
Confidence 2378899999999999999999999999999988764 567778885 6999999999999999999888754 4
Q ss_pred HHHHHHHHhc----ccCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCch---hhHHHHHHHHHhcC
Q 009424 302 EESLRRVESR----ITGR----DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSV----FPGVTN---LGYHAMISSLARIG 366 (535)
Q Consensus 302 ~~~~~~m~~~----g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~---~~~~~ll~~~~~~g 366 (535)
..++.++... .++| |...|...+..|.+..+.+-|.++..-.+.. .+.++. +-|..+..+.|+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 4455554332 2333 3445667788888888888888877665441 122222 45778888899999
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc-c--------
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER-R-------- 437 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~-------- 437 (535)
.++.-...|+.|+..-+-|+..+...++.+..-.|.++-..+++..++..|..-+...-..+...+++.. +
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 9999999999999888888999999999999999999999999999988775545555444555555443 1
Q ss_pred HHH-----HHHH-------HHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-Chh-hHHHHHH
Q 009424 438 ILE-----ALSC-------LKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYR-KEK-DYMSLIG 503 (535)
Q Consensus 438 ~~~-----A~~~-------~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~L~~ 503 (535)
+.. |..+ -.+|. ...+ .....+.+.-.+.+.|..++|.+++..+.+.+-. |.. ..++|++
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r----~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQR----AQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH----hccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 111 1111 11122 2233 3455666666788999999999999999655443 322 6777888
Q ss_pred HhHhhhhccc
Q 009424 504 LTDEAVAENN 513 (535)
Q Consensus 504 ~y~~~~~~~~ 513 (535)
....+.+.+.
T Consensus 567 l~d~a~~~~s 576 (625)
T KOG4422|consen 567 LMDSAKVSNS 576 (625)
T ss_pred HHHHHHhcCC
Confidence 7766555544
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=3e-15 Score=155.20 Aligned_cols=400 Identities=10% Similarity=-0.013 Sum_probs=238.6
Q ss_pred HhccCCCCccHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhC
Q 009424 80 LSLMDNPQLGSASVLNDWEKGGRSLTK--WELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVH 157 (535)
Q Consensus 80 ~~~~g~~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g 157 (535)
..+.|++. .|+..|++..+ ..|+. ..+ .++..+...|+.++|+..++..... -+........+...|...|
T Consensus 44 ~~r~Gd~~-~Al~~L~qaL~--~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 44 RARAGDTA-PVLDYLQEESK--AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHhCCCHH-HHHHHHHHHHh--hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcC
Confidence 35677777 78888888776 44543 233 6677777778888888887777622 2344444444566777778
Q ss_pred CHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHH
Q 009424 158 GVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSE 236 (535)
Q Consensus 158 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 236 (535)
++++|.++|+++.+. +.|...+..++..|.+.++.++|++.++++... .|+...+-.++..+...++..+|++.+++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 888888888877766 334566667777777788888888888777665 34544443333333334555557888887
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHH----------------------------------------------
Q 009424 237 MKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFE---------------------------------------------- 270 (535)
Q Consensus 237 m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~---------------------------------------------- 270 (535)
+.+.. +-+...+..+..+..+.|-...|.++..
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 77764 2345555566666666664444443333
Q ss_pred --HhHhCCCCCCC-HHHH-H---HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 271 --LMKVDKAVNPN-WTTF-S---TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 271 --~~~~~~~~~~~-~~~~-~---~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
.+...-+-.|. ...| . -.+-++.+.|+..++.+.|+.+...|.+....+-..+.++|...+++++|+.+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 22221111121 1111 1 223345566677777777777766554433445556667777777777777777766
Q ss_pred HhhCC----CC-chhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC-----------CCCH---HHHHHHHHHHHHcCChh
Q 009424 344 RSVFP----GV-TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS-----------SYDP---RIANLMMSWYVKEGNFD 404 (535)
Q Consensus 344 ~~~~~----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~li~~~~~~g~~~ 404 (535)
....+ .+ +......|.-++...+++++|..+++.+.+..+ .|++ ..+..++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 44321 11 112235666677777777777777777665221 1221 22334555566677777
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAF 483 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~ 483 (535)
+|++.++++....+. |...+..+...+...|.+.+|.+.++.+. .+.|+. .+......+....|++++|..+
T Consensus 434 ~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~------~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 434 TAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVE------SLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh------hhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 777777777665444 66666677777777777777777776555 345543 3444555566666777777777
Q ss_pred HHHHhcCCCCChh
Q 009424 484 VALLRQPGYRKEK 496 (535)
Q Consensus 484 ~~~~~~~~~~~~~ 496 (535)
.+.+.+..|+...
T Consensus 507 ~~~l~~~~Pe~~~ 519 (822)
T PRK14574 507 TDDVISRSPEDIP 519 (822)
T ss_pred HHHHHhhCCCchh
Confidence 7777666666544
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=4.1e-14 Score=146.81 Aligned_cols=386 Identities=11% Similarity=-0.052 Sum_probs=286.3
Q ss_pred HHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHh
Q 009424 115 ELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRG 193 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~ 193 (535)
...+.|++..|+..+.++.+.. ....+.+. .++..+...|+.++|+..+++.... ........++...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3478899999999999999886 22222334 8888889999999999999998851 122333334456888899999
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
+|+++|+++.+.. +-+...+..++..+...++.++|++.+..+.+. .|+...+..++..+...++..+|.+.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999875 334667778888999999999999999999887 4566666555555555666766999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------------------------------
Q 009424 274 VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLR----------------------------------------------- 306 (535)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----------------------------------------------- 306 (535)
+.. +.+...+..++....+.|-...|.++..
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 642 4456666766666666664444433333
Q ss_pred -HHHhc-ccCCCcc-hH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 307 -RVESR-ITGRDRV-PY----HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 307 -~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
.+... +..|... .| .-.+-++...|+..++++.|+.++..+...+..+-..+.++|...+.+++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 22211 1112211 12 12456778889999999999999988877667788899999999999999999999987
Q ss_pred hcCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------------CCCH-hHHHHHHHHHHccccHHH
Q 009424 380 SVKS-----SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-------------KPNS-TSWETLAEGHIRERRILE 440 (535)
Q Consensus 380 ~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~-~~~~~li~~~~~~g~~~~ 440 (535)
.... .++......|.-+|...+++++|..+++.+.+..+ .||- ..+..++..+...|+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6542 22444457889999999999999999999987322 1222 224456677888999999
Q ss_pred HHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccc
Q 009424 441 ALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNK 514 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~ 514 (535)
|.+.++++. ...| |.......-..+...|...+|++.++......+.+......+...+.+.+.|.++
T Consensus 435 Ae~~le~l~------~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 435 AQKKLEDLS------STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHH------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 999999998 2344 6677888888999999999999999888888777666777888888777777774
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=2.1e-13 Score=144.53 Aligned_cols=389 Identities=11% Similarity=0.011 Sum_probs=257.6
Q ss_pred CHHHHHHH-HHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh-hCCHhhHHHHHhhCCCCCCCHHHHHHH
Q 009424 105 TKWELCRV-VKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK-VHGVASAEDFFLSLPDTLKDRRVYGAL 182 (535)
Q Consensus 105 ~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~~~l 182 (535)
++.+.... .+.|...++|++|+.++..+.+.+ +.+......+...|.. .++ +.+..++....+ .|...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~---pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN---TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF--TDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc--cCHHHHHHH
Confidence 34444444 677788888899999999888886 4445556666667777 366 777777664333 678888899
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCC-cCcchHH------------------------------HHHHH-----------
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGYA-VHSLPYN------------------------------VMMTL----------- 220 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~------------------------------~li~~----------- 220 (535)
...|.+.|+.++|..+++++...... |+..+|- .++..
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999988887643211 1111110 00111
Q ss_pred ----------------------------------------------------HHhcCChhHHHHHHHHHHHc-C-CCCCH
Q 009424 221 ----------------------------------------------------YMKIKEYDEVESMVSEMKEK-G-IRLDV 246 (535)
Q Consensus 221 ----------------------------------------------------~~~~g~~~~a~~~~~~m~~~-g-~~pd~ 246 (535)
..+.|+.++|.++|+..... + -.++.
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 12344555555555544431 1 12233
Q ss_pred HHHHHHHHHHhcCCC---HhHHHHH----------------------HHHhHhCCCC-CC--CHHHHHHHHHHHHhcCCH
Q 009424 247 YSYNIWLSSCGSQGS---TEKMEGV----------------------FELMKVDKAV-NP--NWTTFSTMATMYIKMGQV 298 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~ 298 (535)
....-++..|.+.+. ..++..+ ......-.+. ++ +...|..+..++.. |+.
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 334455566655544 2222111 1111111111 33 56677777777766 788
Q ss_pred HHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 299 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
++|...|.+.... .|+......+...+.+.|++++|+..|+++....+ +...+..+..++.+.|+.++|...++..
T Consensus 493 ~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM--SNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888877776553 35544433344455688999999999998765422 2334556677888899999999999988
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCC
Q 009424 379 LSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWR 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~ 458 (535)
.+..+. +...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|++.++++. ...
T Consensus 569 L~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL------~l~ 639 (987)
T PRK09782 569 EQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL------ELE 639 (987)
T ss_pred HhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HhC
Confidence 876533 3333334444455569999999999998875 4567888888899999999999999999998 456
Q ss_pred CCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 459 PKPV-NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 459 p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
|+.. .+..+..++...|+.++|...+++.++..|.....+..+..+|...|+.++
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 7554 555555688889999999999999999888777788888888888777776
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=1.8e-13 Score=145.05 Aligned_cols=416 Identities=9% Similarity=0.019 Sum_probs=269.0
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
+...+..|.+.|.+.|+++ +|+..+++..+ ..|+...|..++..+ ++.++|.++++++.+.. +.+..++..
T Consensus 77 n~~~~~~LA~~yl~~g~~~-~A~~~~~kAv~--ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~---P~n~~~~~~ 147 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDD-RARLLLEDQLK--RHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ---KACDAVPTL 147 (987)
T ss_pred CHHHHHHHHHHHHHCCCHH-HHHHHHHHHHh--cCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC---CCChhHHHH
Confidence 4567788999999999999 99999999887 566666655555333 88889999999999875 445555555
Q ss_pred HHHH--------HHhhCCHhhHHHHHhhCCCCCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHH
Q 009424 149 QLDL--------IAKVHGVASAEDFFLSLPDTLKDRRV-YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMT 219 (535)
Q Consensus 149 li~~--------~~~~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 219 (535)
+... |.+.+....+.+ .+.....|+..+ .-.+...|.+.|++++|++++.++.+.+ +.+..-+..+-.
T Consensus 148 la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ 224 (987)
T PRK09782 148 RCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFD 224 (987)
T ss_pred HHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 5555 777766666665 222221223443 4444888999999999999999998875 223333555556
Q ss_pred HHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH------------
Q 009424 220 LYMK-IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS------------ 286 (535)
Q Consensus 220 ~~~~-~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 286 (535)
.|.+ .++ +++..+++. .++-|...+..+.+.+.+.|+.++|.+++.++.....-.|+..+|-
T Consensus 225 ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~ 299 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQ 299 (987)
T ss_pred HHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhh
Confidence 6666 355 666666442 2334667777777777777777777777766642110011111110
Q ss_pred --------------------------------------------------------------------------------
Q 009424 287 -------------------------------------------------------------------------------- 286 (535)
Q Consensus 287 -------------------------------------------------------------------------------- 286 (535)
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l 379 (987)
T PRK09782 300 ALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRL 379 (987)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHH
Confidence
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhc-c-c--------------------------------------------------
Q 009424 287 -TMATMYIKMGQVEKAEESLRRVESR-I-T-------------------------------------------------- 313 (535)
Q Consensus 287 -~li~~~~~~g~~~~A~~~~~~m~~~-g-~-------------------------------------------------- 313 (535)
-+.....+.|+.++|.++|+..... + -
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 0001112344455555555544320 0 0
Q ss_pred ------------CC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 314 ------------GR--DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 314 ------------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
.+ +...|..+..++.. ++.++|+..|.+..... |+......+...+...|++++|...++.+.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 00 12223333333333 55666777666665543 333333334444567888999988888875
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
.. .|+...+..+...+.+.|+.++|...+++..+.++. +...+..+...+.+.|++++|+..+++.. ...|
T Consensus 537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL------~l~P 607 (987)
T PRK09782 537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSL------NIAP 607 (987)
T ss_pred cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HhCC
Confidence 44 234445566677888889999999999888875422 23333333344445699999999999998 4668
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 460 KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 460 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+...+..+..++.+.|++++|...+++.++..+.....+..+...+...|+..+
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 888888888899999999999999999999998888888888888888777766
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3.6e-13 Score=122.36 Aligned_cols=367 Identities=12% Similarity=0.100 Sum_probs=255.2
Q ss_pred CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC--CCCHHHHH
Q 009424 103 SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYG 180 (535)
Q Consensus 103 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~ 180 (535)
+-+..||.++|.++++.-..+.|.+++....... ...+..++|.+|.+-+-..+ .++..+|... .||..|+|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k--~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK--GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh--heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 3478899999999999999999999998887766 68888899998886654433 5566666544 69999999
Q ss_pred HHHHHHHHcCCHhHH----HHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhH-HHHHHHHHHHc----CCCC----CHH
Q 009424 181 ALLNAYVRARMRGNA----ELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE-VESMVSEMKEK----GIRL----DVY 247 (535)
Q Consensus 181 ~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~----g~~p----d~~ 247 (535)
+++++.++.|+++.| .+++.+|++-|+.|...+|..+|..+.+.++..+ +..++.+++.. .++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 999999999988765 5677899999999999999999999999888754 55555555442 2333 556
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHhHhCCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHH
Q 009424 248 SYNIWLSSCGSQGSTEKMEGVFELMKVDKA---VNPN---WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYH 321 (535)
Q Consensus 248 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 321 (535)
.|.+.++.|.+..+.+.|.++..-+....+ +.|+ .+-|..+....++....+.-...|+.|.-+-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 788889999999999999999988764211 2333 2346677788888999999999999998877888888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG 401 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 401 (535)
.++++....|.++-.-++|.++...|-. ++..+ .++++..+....+.|+...-.-+-...+++-
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~~l-----------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHT-----FRSDL-----------REEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhh-----hhHHH-----------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999888775432 22222 2344455555554444332222222222221
Q ss_pred -Ch-hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhh
Q 009424 402 -NF-DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 402 -~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~ 479 (535)
++ +..+..-.+|.+... .....+.+.-.+.+.|+.++|.+++.-..+...+--..|.-....-++.+.....+.-.
T Consensus 502 ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 11 111222233443322 44556666777788888888888888886211111122333334456666777778888
Q ss_pred HHHHHHHHhcCCCC
Q 009424 480 KEAFVALLRQPGYR 493 (535)
Q Consensus 480 a~~~~~~~~~~~~~ 493 (535)
|..+++.+...+..
T Consensus 580 A~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 580 AIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHcCch
Confidence 88888888665544
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=4.5e-13 Score=133.62 Aligned_cols=423 Identities=10% Similarity=0.059 Sum_probs=269.8
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRS--LTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASD 145 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 145 (535)
-|++.-|.|-+.|...|+++ .+..+...+...-.. .-...|--+.+++-..|+++.|.+.|-...+.. .......
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~-~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYE-RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 46777888888888888888 888888877664311 123446677888888888888888888777765 2223444
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhhCCCCCCC-HHHHHHHHHHHHHcC----CHhHHHHHHHHHHHCCCCcCcchH------
Q 009424 146 AAIQLDLIAKVHGVASAEDFFLSLPDTLKD-RRVYGALLNAYVRAR----MRGNAELLIDKMRDKGYAVHSLPY------ 214 (535)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~------ 214 (535)
+-.+..+|.+.|+++.+...|+.+....|| ..+.-.|-..|+..+ ..+.|..+..+..+.- +.|...|
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 455677888888888888888877665343 344444445555443 3344444444433332 2233334
Q ss_pred --------------------------------HHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH------HHHHHHH
Q 009424 215 --------------------------------NVMMTLYMKIKEYDEVESMVSEMKEK---GIRLDV------YSYNIWL 253 (535)
Q Consensus 215 --------------------------------~~li~~~~~~g~~~~a~~~~~~m~~~---g~~pd~------~~~~~ll 253 (535)
|.+...+...|.+.+|...|...... ...+|. .+--.+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 44444444445555555555444332 111111 1111122
Q ss_pred HHHhcCCCHhHHHHHHHHhHhCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC
Q 009424 254 SSCGSQGSTEKMEGVFELMKVDKAVNPNWT-TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK 332 (535)
Q Consensus 254 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (535)
...-..++.+.|.+.|..+.+. .|+-+ .|--+..+--..+...+|...+....+. ...++..|..+-..+.+...
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhh
Confidence 2333344455555555555432 22211 1112221222234566677777666542 23455566666667777777
Q ss_pred HHHHHHHHHHHHhh-CCCCchhhHHHHHHHHHhc------------CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009424 333 KEEVYRVWNLYRSV-FPGVTNLGYHAMISSLARI------------GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK 399 (535)
Q Consensus 333 ~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 399 (535)
+..|..-|...... ...+|.++..+|.+.|.+. +..++|.++|.++++..+. |...-|.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhh
Confidence 77777766665442 2234555555555544322 4577899999999887766 88888999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhh
Q 009424 400 EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~ 479 (535)
.|++.+|..+|.+..+.... +..+|--+...|...|++..|+++|+.... ...-.-+......|-+++...|.+.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lk---kf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLK---KFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHH---HhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999986443 667899999999999999999999999884 34445567788889999999999999
Q ss_pred HHHHHHHHhcCCCCChh-hHHHHHH
Q 009424 480 KEAFVALLRQPGYRKEK-DYMSLIG 503 (535)
Q Consensus 480 a~~~~~~~~~~~~~~~~-~~~~L~~ 503 (535)
|.+.+.......+.++. .+|..+-
T Consensus 735 ak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999988888776 5554433
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=6.3e-13 Score=121.60 Aligned_cols=419 Identities=11% Similarity=0.003 Sum_probs=268.0
Q ss_pred HHHhccCCCCccHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHh----HHHHHHHH
Q 009424 78 RKLSLMDNPQLGSASVLNDWEKGGRSLTKWELC-RVVKELRKFRRYKHALEVYDWMNNRGERFRLSAS----DAAIQLDL 152 (535)
Q Consensus 78 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~~~li~~ 152 (535)
+-|..+.... +|+..|+-..+....|+.-.+. .+-..+.+.+.+..|++.|...+..- ...+.. ..+.+.-.
T Consensus 209 qqy~~ndm~~-ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv--psink~~rikil~nigvt 285 (840)
T KOG2003|consen 209 QQYEANDMTA-EALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV--PSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHhhhhHHHH-HHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc--cccchhhHHHHHhhcCee
Confidence 4455556666 7888888777776667655432 23345667788889999988877665 333333 33333345
Q ss_pred HHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCc------------chHHHHH--
Q 009424 153 IAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHS------------LPYNVMM-- 218 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------~~~~~li-- 218 (535)
+.+.|++++|..-|+...+..||..+--.|+-++..-|+-++..+.|.+|..--..||. ...|.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 67889999999999988777788877667777777789999999999999754322222 2122111
Q ss_pred ---HHHHhcC--ChhHHHHHHHHHHHcCCCCCHHH-------------HH--------HHHHHHhcCCCHhHHHHHHHHh
Q 009424 219 ---TLYMKIK--EYDEVESMVSEMKEKGIRLDVYS-------------YN--------IWLSSCGSQGSTEKMEGVFELM 272 (535)
Q Consensus 219 ---~~~~~~g--~~~~a~~~~~~m~~~g~~pd~~~-------------~~--------~ll~~~~~~g~~~~a~~~~~~~ 272 (535)
.-.-+.+ +.++++-.-..+..--+.||-.. +. .-.--+.+.|+++.|.+++.-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 11111111111111111111100 00 0011355666666666666555
Q ss_pred HhCCCCCC-----------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc
Q 009424 273 KVDKAVNP-----------------------------------NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR 317 (535)
Q Consensus 273 ~~~~~~~~-----------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 317 (535)
.+...-.. +....+.-.+.-..+|++++|.+.+++.......-..
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 43211000 1111111111122467899999999888653222222
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 318 VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
..||.= -.+-..|++++|++.|-++... ..-+......+.+.|....+..+|.+++.+.... ++.|+.+...|.+.|
T Consensus 526 alfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 233322 2356678999999999887664 2223456667888888899999999999887543 344889999999999
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH-HhcCC
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC-EEESD 476 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~-~~~g~ 476 (535)
-+.|+-..|.+..-.--.. +.-|..+..-|..-|....-+++|+.+|+++. -+.|+..-|..++..| .+.|+
T Consensus 603 dqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa------liqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA------LIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred hcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH------hcCccHHHHHHHHHHHHHhccc
Confidence 9999999999887655443 33477888888888999999999999999987 6899999999998876 57899
Q ss_pred hhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhh
Q 009424 477 MGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAV 509 (535)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~ 509 (535)
+..|..+++..-+.-+++-....-|+......|
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999988776666557788888874443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=1.2e-11 Score=122.95 Aligned_cols=370 Identities=12% Similarity=0.087 Sum_probs=275.9
Q ss_pred HHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHh
Q 009424 115 ELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRG 193 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~ 193 (535)
.+...|++++|..++..+++.. +.....|-.|...|-..|+.+++...+--.-.. +.|...|-.+-....+.|.++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 3344499999999999999986 677888999999999999999999877655443 467899999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhcCCCHhHHHHHH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSY----NIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~----~~ll~~~~~~g~~~~a~~~~ 269 (535)
+|.-.|.+..+.. +++...+---+..|-+.|+...|.+-|.++.+...+.|..-+ -.++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999875 555555556678899999999999999999987542233222 33455677788889999998
Q ss_pred HHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC----------------------cchHH----HH
Q 009424 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD----------------------RVPYH----YL 323 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------------~~~~~----~l 323 (535)
+......+-..+...++.++..|.+...++.|......+.....++| ..+|. -+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 88775434455666788999999999999999998888866222222 11111 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC--CCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVF--PGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG 401 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 401 (535)
+-++.+....+....+........ +.-+...|.-+..++...|++..|..++..+......-+..+|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223333333333333333333333 333446788999999999999999999999988766667889999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhc----cCCCCCCCHHHHHHHHHHHHhcCCh
Q 009424 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAE----GAKSWRPKPVNVINFFKACEEESDM 477 (535)
Q Consensus 402 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~g~~p~~~~~~~ll~a~~~~g~~ 477 (535)
..++|...|+......+. +...-..|-..+-+.|+.++|++.+..+..-. +..++.|+..........+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999885333 55666677788899999999999999965111 1345667766666666777888888
Q ss_pred hhHHHHHHHHhc
Q 009424 478 GSKEAFVALLRQ 489 (535)
Q Consensus 478 ~~a~~~~~~~~~ 489 (535)
++-..+...|+.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 776665555543
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=1.5e-10 Score=110.93 Aligned_cols=327 Identities=9% Similarity=0.049 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
+|+.-...|.+.+.++-|+.+|....+- ++-+...|......=-..|..++...+|++....- +-....|-...+-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4555555566666677777777666554 23345556666655556677777777777776652 234444555555566
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVY 337 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 337 (535)
..|+...|+.++....+.. +.+...|-+-+..-..+..++.|+.+|.+... ..|+...|..-+...--.+..++|+
T Consensus 596 ~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 6788888888888877532 44666788888888888888888888887754 4567777776666666677888888
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009424 338 RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417 (535)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 417 (535)
+++++..+..+..+ ..|-.+...+-+.++++.|...|..-.+.- +..+..|-.|.+.--+.|++-.|..++++..-++
T Consensus 672 rllEe~lk~fp~f~-Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKSFPDFH-KLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHhCCchH-HHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 88888777654433 456667777777788888887777544332 2245677777777777888888888888887776
Q ss_pred CCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCC-------------------------CCCHHHHHHHHHHHH
Q 009424 418 GKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSW-------------------------RPKPVNVINFFKACE 472 (535)
Q Consensus 418 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~-------------------------~p~~~~~~~ll~a~~ 472 (535)
++ |...|-..|..=.+.|+.+.|..+..++.+..+..|+ .-|+.....+...+.
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 66 7788888888888888888888777777654444443 234555666667777
Q ss_pred hcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 473 EESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
....++.|++.|.+.++.++....+|.-+...+...|..++
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 77889999999999999999888888888888877775444
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=6e-12 Score=122.83 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=195.7
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcCCCHhHHH
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYN--IWLSSCGSQGSTEKME 266 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~--~ll~~~~~~g~~~~a~ 266 (535)
.|+++.|.+......+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588888887777665542111 222333334446788888888888888765 34443322 3355677888888888
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-------chHHHHHHHHHhcCCHHHHHHH
Q 009424 267 GVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR-------VPYHYLLSLYGSVGKKEEVYRV 339 (535)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~ 339 (535)
..++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888887542 556777888888888888888888888888776554322 1233334434444555666666
Q ss_pred HHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009424 340 WNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419 (535)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 419 (535)
++......+ .+......+..++...|+.++|.+++.+..+. .+|... .++.+....++.+++.+..+...+..+.
T Consensus 252 w~~lp~~~~-~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRKTR-HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHHHh-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 666544322 23456677888888888888888888888763 334422 1233334558888888888888876544
Q ss_pred CCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 420 PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 420 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
|...+.++...|.+.+++++|.+.|+.+. ...|+..++..+..++.+.|+.++|.+++++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al------~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAAL------KQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66677888888888889999999998888 4678888888888888888898888888887654
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=7.6e-12 Score=125.06 Aligned_cols=414 Identities=12% Similarity=0.078 Sum_probs=274.2
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
.++.++...-.. -.-|+...+.|..-+.-.|++..+.++...+++....-..-...+--+..+|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 455555544332 2236677778889999999999999999999886521223344577789999999999999999998
Q ss_pred CCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC----ChhHHHHHHHHHHHcCC
Q 009424 169 LPDTLKDR--RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK----EYDEVESMVSEMKEKGI 242 (535)
Q Consensus 169 ~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~ 242 (535)
.....+|. ..+--|...|.+.|+++.+...|+...+.. +-+..+...+...|...+ ..+.|..++....+.-
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 77664544 345567789999999999999999998863 445667777777777665 4566666666666553
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH---hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---ccCCC
Q 009424 243 RLDVYSYNIWLSSCGSQGSTEKMEGVFELMK---VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR---ITGRD 316 (535)
Q Consensus 243 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~ 316 (535)
+.|...|-.+-..+-...-+.. ...+.... ...+-.+-....|.+...+...|++++|...|+..... -..+|
T Consensus 411 ~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 3466677666666655443332 54444332 11223466677888888888888888888888877544 12233
Q ss_pred cc-------hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------------------------chhhHH
Q 009424 317 RV-------PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV---------------------------------TNLGYH 356 (535)
Q Consensus 317 ~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------------------------------~~~~~~ 356 (535)
.. -|| +...+-..++.+.|.+.|..+....|.- +...++
T Consensus 490 e~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 490 EGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred ccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 31 222 2233333444555555555544432221 112233
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH------------cCChhHHHHHHHHHHHcCCCCCHh
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKS-SYDPRIANLMMSWYVK------------EGNFDKAEAFFNSIIEEGGKPNST 423 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~ 423 (535)
.+...+.+...+..|.+-|..+.+.-. .+|+.+.-+|.+.|.. .+..++|+++|.+.....++ |..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhh
Confidence 333344444445555544443333211 2455555555554432 24567888888888876655 777
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC-CCCChh-hHHHH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP-GYRKEK-DYMSL 501 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~-~~~~L 501 (535)
.-|-+.-.++..|++.+|..+|.+..+ .. .-+..+|..+...|...|.+..|.++|+...+. ....+. +..+|
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrE----a~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVRE----AT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHH----HH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 888888889999999999999999993 33 235568899999999999999999999988755 545555 88999
Q ss_pred HHHhHhhhhccc
Q 009424 502 IGLTDEAVAENN 513 (535)
Q Consensus 502 ~~~y~~~~~~~~ 513 (535)
..+|-++|.+.+
T Consensus 723 ara~y~~~~~~e 734 (1018)
T KOG2002|consen 723 ARAWYEAGKLQE 734 (1018)
T ss_pred HHHHHHhhhHHH
Confidence 999988888887
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.5e-11 Score=108.03 Aligned_cols=372 Identities=13% Similarity=0.083 Sum_probs=244.8
Q ss_pred CCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHH
Q 009424 101 GRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYG 180 (535)
Q Consensus 101 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 180 (535)
+..-|.+-+-..-..+.+.|..+.|...|-..+..- +.....+.. ...-.-+.+.+..+....+. .+...-.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~---P~~W~AWle---L~~lit~~e~~~~l~~~l~~--~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY---PWFWSAWLE---LSELITDIEILSILVVGLPS--DMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC---CcchHHHHH---HHHhhchHHHHHHHHhcCcc--cchHHHH
Confidence 445565555444455566777777777777666543 333333333 33333444544444444433 1111111
Q ss_pred -HHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHh
Q 009424 181 -ALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIR--LDVYSYNIWLSSCG 257 (535)
Q Consensus 181 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--pd~~~~~~ll~~~~ 257 (535)
-+..+|-...+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+.+.- -|..+|+.++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 223455566678888888888888876555444444445555677889999999998887421 26777877764433
Q ss_pred cCCCHhH-HHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 258 SQGSTEK-MEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 258 ~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
....+.- |..++ .+. .+. +.|+..+.+.|+-.++.++|...|++..+-++ .....|+.|-.-|....+...|
T Consensus 311 ~~skLs~LA~~v~-~id---KyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NID---KYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhHHHHHHHHHHH-Hhc---cCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHH
Confidence 3222221 22222 222 123 34777778888888889999999988876432 2456788888889999999999
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
++.++...+..|. |-..|-.+..+|.-.+...-|+-.|++..+..+. |..+|.+|.++|.+.++.++|++.|.+....
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999988875333 4578888999999888888888888888776544 8889999999999999999999999888876
Q ss_pred CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 417 GGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV--NVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 417 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
|-. +...+..+...|-+.++.++|...|.+-.+.....|..-+.. ...-|..-+.+.+++++|..+.......
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 544 667888888888888888998888887764322334333322 1222334567778888888777766655
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=4.5e-12 Score=123.72 Aligned_cols=283 Identities=10% Similarity=0.062 Sum_probs=211.0
Q ss_pred hCCHhhHHHHHhhCCCCCCCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHH--HHHHHHHhcCChhHHHH
Q 009424 156 VHGVASAEDFFLSLPDTLKDRRVYGAL-LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYN--VMMTLYMKIKEYDEVES 232 (535)
Q Consensus 156 ~g~~~~A~~~f~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~ 232 (535)
.|+++.|++.+...++..++...+-.+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888888888766642333333333 34447889999999999998775 34543332 33567888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 009424 233 MVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW------TTFSTMATMYIKMGQVEKAEESLR 306 (535)
Q Consensus 233 ~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~ 306 (535)
.++++.+.. +-+......+...|.+.|+++.|.+++..+.+.....++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 3467778888889999999999999999998754332221 133344444445556666677777
Q ss_pred HHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 307 RVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
.+.+. .+.+......+...+...|+.++|..++++..+... +.. ..++.+....++.+++.+..+...+..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 66432 234667788889999999999999999988877433 321 12344445568999999999988877655 7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+.....+...+.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788889999999999999999999999874 6888888999999999999999999999886
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.4e-14 Score=135.04 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=71.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCC-CcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGY-AVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
...+.+.|++++|++++++-....- +.|..-|..+...+...+++++|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3444555555555555543322221 122333333444444455555565555555554322 33344444444 45555
Q ss_pred HhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009424 262 TEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI-TGRDRVPYHYLLSLYGSVGKKEEVYRVW 340 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (535)
+++|.+++...-++ .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555544332 2344445555555555666666666555544321 1234445555555555566666666666
Q ss_pred HHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 009424 341 NLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP 420 (535)
Q Consensus 341 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 420 (535)
++..+..|. +......++..+...|+.+++.+++....+.. ..|+..+..+..+|...|+.++|...|++.......
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 655554333 22344455555555566665555555554433 224445555666666666666666666665553222
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|......+..++.+.|+.++|.++.+++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55555555666666666666666555544
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.7e-10 Score=106.63 Aligned_cols=412 Identities=11% Similarity=0.041 Sum_probs=272.5
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
++..|-.--.-=...++.. .|.++|++.+... .-+...+-.-+..-.+.+.+..|..+++..+..- +--...+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~-RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyK 146 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQ-RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHH
Confidence 3444443333334455566 7777887776532 2233334455555667777778888888777653 222223333
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChh
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYD 228 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 228 (535)
.+.+=-..|++..|+++|++-.+-.|+...|++.|+.=.+-+.++.|+.++++..-. .|++.+|--....=.+.|...
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 444445667888888888876666688888888888888888888888888877654 477777777777777777777
Q ss_pred HHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC-------------------------------
Q 009424 229 EVESMVSEMKEK-GI-RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD------------------------------- 275 (535)
Q Consensus 229 ~a~~~~~~m~~~-g~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------- 275 (535)
.|..+|....+. |- .-+...+++...-=..+..++.|.-+|.....+
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 777777665543 10 011122222222222333444444444333211
Q ss_pred -----------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc--chHHHHHH--------HHHhcCCHH
Q 009424 276 -----------KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR--VPYHYLLS--------LYGSVGKKE 334 (535)
Q Consensus 276 -----------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~--------~~~~~g~~~ 334 (535)
..-+.|-.+|--.+..-...|+.+...++|++.... ++|-. .-|.-.|- .-....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 011345556666677677778888888888887754 33311 12222221 123457788
Q ss_pred HHHHHHHHHHhhCCCCchhhHHHHHHHHH----hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009424 335 EVYRVWNLYRSVFPGVTNLGYHAMISSLA----RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFF 410 (535)
Q Consensus 335 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 410 (535)
.+.++|+..... +....+||.-+--.|+ +..++..|.+++... .|..|...++-..|..-.+.+++|...+++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888774 2333467766655554 557889999999986 577888999999999999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 411 NSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 411 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
++..+.++. |..+|.-....=...|+.+.|..+|.-+.. ...+..-...|.+.|..=...|.++.|+.+++++++.
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~---qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAIS---QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc---CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999998776 888998888888889999999999999982 2223333567778888778889999999999999987
Q ss_pred CCCCh
Q 009424 491 GYRKE 495 (535)
Q Consensus 491 ~~~~~ 495 (535)
.....
T Consensus 537 t~h~k 541 (677)
T KOG1915|consen 537 TQHVK 541 (677)
T ss_pred cccch
Confidence 65443
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=1e-11 Score=121.94 Aligned_cols=290 Identities=11% Similarity=-0.022 Sum_probs=156.9
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHS-LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKME 266 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~ 266 (535)
..|+++.|.+.+.+..+.. |+. ..+-....++.+.|+++.|.+.+.+..+....++..........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3566666666666655442 332 2222333455566667777766666655421112223333455566666777777
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHH---HhcCCHHHHHHHHHHH
Q 009424 267 GVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY---GSVGKKEEVYRVWNLY 343 (535)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m 343 (535)
..++.+.+.. +-+..+...+...|.+.|++++|.+.+..+.+.++.+....-..-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7776666532 4455566666666777777777777777666654332221111111111 2222223333344444
Q ss_pred HhhCCC---CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHHcCC
Q 009424 344 RSVFPG---VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY--VKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 344 ~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~ 418 (535)
....+. .+...+..+...+...|+.++|.+++++..+..+......+. ++..+ ...++.+.+.+.++...+..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 443332 134555666667777777777777777766654332111111 22222 224556666777766665422
Q ss_pred CCCH--hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 419 KPNS--TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 419 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
. |. ....++...+.+.|++++|.+.|+... .....||...+..+...+.+.|+.++|.+++++.
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~----a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVA----ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhH----HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 33 445566777777777777777777433 2245677777777777777777777777777664
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=4.5e-10 Score=107.85 Aligned_cols=416 Identities=9% Similarity=0.010 Sum_probs=227.6
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHH----HHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHh
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLND----WEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSAS 144 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 144 (535)
+...|-+--.-=-++|+.+ .+.++..+ +...|+..+...|-.=..+|-..|..-.+..+...++..|..-.-...
T Consensus 439 d~~IWitaa~LEE~ngn~~-mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVD-MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred ChhHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 4556766666666677777 66666554 334466666666655556666666666666666655555532233344
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 145 DAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
++..-.+.|.+.+.++-|+.+|....+. +.+...|......--..|..++-..+|++.... ++-....|-....-+-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHh
Confidence 5555555555566666666665554443 334445555554444455555555555555543 12223334444444445
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009424 224 IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEE 303 (535)
Q Consensus 224 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (535)
.|+...|..++.+.-+.. +-+...|-.-+..-..+.+++.|+.+|.+... ..|+..+|.--+..---.+..++|.+
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 555555555555554443 12444455555555555555555555555543 23444444444444444455555555
Q ss_pred HHHHHHhcccCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhc
Q 009424 304 SLRRVESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 381 (535)
++++..+. -|+-. .|-.+-+.+-+.++.+.|.+.|..-.+. .|.. -.|..+...=-+.|.+-.|+.+++.....
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 55554432 12222 3444444445555555555544443332 1111 23444444444444555555555554444
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----------------------------CCCCCHhHHHHHHHHH
Q 009424 382 KSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE-----------------------------GGKPNSTSWETLAEGH 432 (535)
Q Consensus 382 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------------------------~~~p~~~~~~~li~~~ 432 (535)
+++ +...|-..|.+-.+.|+.+.|..+..+..+. ...-|....-.+...+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 433 4445555555555555555544444333321 0112555566666777
Q ss_pred HccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHH
Q 009424 433 IRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSL 501 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L 501 (535)
-...+++.|.+.|.+.. .+.||. .+|..+......+|.-+.-.++++......|.-...|-+.
T Consensus 828 w~e~k~~kar~Wf~Rav------k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAV------KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHH------ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 88889999999999999 445554 5888889999999999999999999998887765555443
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=3.7e-14 Score=132.23 Aligned_cols=259 Identities=15% Similarity=0.097 Sum_probs=98.0
Q ss_pred HHHHHHHhhCCHhhHHHHHhhC-CCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhc
Q 009424 148 IQLDLIAKVHGVASAEDFFLSL-PDT--LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~-~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 224 (535)
.+...+.+.|++++|.+++++. ... +.|...|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3355566677777777777432 222 134455666666666778888888888888766422 44556666666 677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
+++++|.+++...-+.. ++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888777665542 4556667777778888888888888888765444456777788888888888888888888
Q ss_pred HHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC
Q 009424 305 LRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383 (535)
Q Consensus 305 ~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 383 (535)
+++..+. .| |....+.++..+...|+.+++.++++...... ..+...+..+..++...|+.++|...+++..+..+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 8887764 34 45567777888888888888777777776653 22334566778888888888888888888777554
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
. |+.+...+.+++...|+.++|.++..+..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T--HHHHHHHHHHHT----------------
T ss_pred c-ccccccccccccccccccccccccccccc
Confidence 4 77778888888888888888888876654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=9.6e-11 Score=108.01 Aligned_cols=371 Identities=13% Similarity=0.139 Sum_probs=261.7
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchH---HH
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPY---NV 216 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ 216 (535)
..|.+.+-...-.+-+.|....|++.|-.... .-+..|.+-+...--.-+.+.+..+.... +.| ..| --
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~--~~P~~W~AWleL~~lit~~e~~~~l~~~l-----~~~-~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN--RYPWFWSAWLELSELITDIEILSILVVGL-----PSD-MHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHh--cCCcchHHHHHHHHhhchHHHHHHHHhcC-----ccc-chHHHHHH
Confidence 34444433334445666777788887776655 23344544443332233333332222111 111 111 12
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC-CCHHHHHHHHHHHHhc
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN-PNWTTFSTMATMYIKM 295 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 295 (535)
+..++....+.+++++-.......|++-+...-+....+.-...|+++|+.+|+++.+..... -|..+|+.++ |.+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 345566667888899888889998876665555555556677889999999999999742211 2566887776 5554
Q ss_pred CCHHH---HHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHH
Q 009424 296 GQVEK---AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGME 372 (535)
Q Consensus 296 g~~~~---A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 372 (535)
.+..- |..+++ + -+--+.|...+.+-|+-.++.++|+..|++..+.++... ..|+.+..-|....+...|.
T Consensus 311 ~~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~-~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL-SAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh-HHHHHhhHHHHHhcccHHHH
Confidence 43322 333322 1 123455777788889999999999999999998665533 67889999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhc
Q 009424 373 KIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAE 452 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 452 (535)
+-++.+++..+. |-..|-.|.++|.-.+...-|+-.|++..+..+. |...|.+|...|.+.++.++|++.|..+.
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai--- 459 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAI--- 459 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHH---
Confidence 999999988766 8999999999999999999999999999986444 89999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC----CCCChh---hHHHHHHHhHhhhhccc-------ccCCC
Q 009424 453 GAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP----GYRKEK---DYMSLIGLTDEAVAENN-------KKNDE 518 (535)
Q Consensus 453 ~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~~~---~~~~L~~~y~~~~~~~~-------~~~~i 518 (535)
..| ..+...+..+...+-+.++.++|.+.+++.++. |...+. ...-|..-+.+.+.+++ .-.+-
T Consensus 460 -~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 460 -LLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred -hcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 444 336688999999999999999999999888763 434332 23446666777777777 22332
Q ss_pred CCChhHHHHHHhhhh
Q 009424 519 DSDEDSEMLLSQLQF 533 (535)
Q Consensus 519 ~~~~~~~~l~~~l~~ 533 (535)
..-+|.+++++++..
T Consensus 538 ~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 538 TECEEAKALLREIRK 552 (559)
T ss_pred chHHHHHHHHHHHHH
Confidence 233478888888754
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.6e-11 Score=120.52 Aligned_cols=289 Identities=10% Similarity=0.035 Sum_probs=202.5
Q ss_pred HhhCCHhhHHHHHhhCCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcc--hHHHHHHHHHhcCChhHH
Q 009424 154 AKVHGVASAEDFFLSLPDTLKDR-RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSL--PYNVMMTLYMKIKEYDEV 230 (535)
Q Consensus 154 ~~~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a 230 (535)
...|+++.|++.+.+..+..|+. ..+-.....+.+.|+.+.|.+.+.+..+.. |+.. ..-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 34688888888888777654543 334444566777899999999998876643 4443 333346777888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHHH
Q 009424 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS-TMATM---YIKMGQVEKAEESLR 306 (535)
Q Consensus 231 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~---~~~~g~~~~A~~~~~ 306 (535)
.+.++.+.+.. +-+..++..+...+...|+++.|.+.+..+.+.. . .+...+. .-... +...+..+.+.+.+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-L-FDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999988875 3366678888888999999999999999888642 2 2332221 11111 122233333334444
Q ss_pred HHHhcccC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHH--HhcCCHhhHHHHHHHHHhc
Q 009424 307 RVESRITG---RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSL--ARIGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 307 ~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~ 381 (535)
.+.+..+. .+...+..+...+...|+.++|.+++++..+..+......+. ++..+ ...++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44433221 367788888899999999999999999988865554322211 22222 3357788888888887766
Q ss_pred CCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 382 KSSYDP--RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 382 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544 55 67778999999999999999999965444457888888899999999999999999999875
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=1e-10 Score=116.35 Aligned_cols=351 Identities=13% Similarity=0.091 Sum_probs=264.5
Q ss_pred HHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEV 230 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 230 (535)
.+++ |++++|.+++.++... +.+...|-+|-..|-+.|+.+++...+-..-..+ +-|..-|..+-....+.|.+++|
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 3444 9999999999998876 6678899999999999999999998886665543 44678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH-HHH----HHHHHHHHhcCCHHHHHHHH
Q 009424 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW-TTF----STMATMYIKMGQVEKAEESL 305 (535)
Q Consensus 231 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~----~~li~~~~~~g~~~~A~~~~ 305 (535)
.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.... +|.. .-+ -..+..|...++.+.|.+.+
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999985 4565555566778999999999999999998632 2222 222 23456677788889999999
Q ss_pred HHHHhc-ccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----------------------CCchhhH----HHH
Q 009424 306 RRVESR-ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP----------------------GVTNLGY----HAM 358 (535)
Q Consensus 306 ~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------------------~~~~~~~----~~l 358 (535)
+..... +-..+...++.++..|.+...++.|......+..... .++...| .-+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 887652 2334566788999999999999999998888876111 1111111 123
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVK--SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.-++.+....+....+.....+.. +.-+...|.-+.++|...|++.+|..+|..+......-+...|--+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 334455566666666666666666 344577888999999999999999999999998655557889999999999999
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCC--------CCChh-hHHHHHHHhH
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVALLRQPG--------YRKEK-DYMSLIGLTD 506 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--------~~~~~-~~~~L~~~y~ 506 (535)
..++|++.|.... ...|+.. .-.+|-..+...|+.|+|.+.++.+..-+ ..|.. ......+.|.
T Consensus 464 e~e~A~e~y~kvl------~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 464 EYEEAIEFYEKVL------ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred hHHHHHHHHHHHH------hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999 5667654 44456667889999999999999976322 22333 3345556666
Q ss_pred hhhhccc
Q 009424 507 EAVAENN 513 (535)
Q Consensus 507 ~~~~~~~ 513 (535)
..|+.++
T Consensus 538 ~~gk~E~ 544 (895)
T KOG2076|consen 538 QVGKREE 544 (895)
T ss_pred HhhhHHH
Confidence 6666555
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.3e-11 Score=118.87 Aligned_cols=285 Identities=14% Similarity=0.101 Sum_probs=172.6
Q ss_pred ChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCH-hHH
Q 009424 121 RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMR-GNA 195 (535)
Q Consensus 121 ~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~-~~A 195 (535)
..++|...|..+..+. .....+...+..+|...+++++|+++|+.+.+. ..+...|.+.+..+-+.=.. --|
T Consensus 334 ~~~~A~~~~~klp~h~---~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH---YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 4566777777744443 344477777777777777777777777776654 33566777766554332111 112
Q ss_pred HHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 196 ELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 196 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
.++.+.++ -...+|-++..+|.-.++.+.|++.|++..+.+ +-...+|+.+-.=+....++|.|...|+....-
T Consensus 411 q~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 411 QDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22222222 235777777777777777777777777776653 125666766666666777777777777776631
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhH
Q 009424 276 KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 276 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
. +.+-..|--|...|.|.++++.|+-.|+...+-++ .+.+....+...+-+.|+.++|++++++.....+.- ...-
T Consensus 485 ~--~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn-~l~~ 560 (638)
T KOG1126|consen 485 D--PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN-PLCK 560 (638)
T ss_pred C--chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC-chhH
Confidence 1 22233444566667777777777777777665332 244555555666667777777777777766644432 2223
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 419 (535)
.-....+...++.++|.+.++++++.-++ +..++..+...|.+.|+.+.|..-|.-+.+.+++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 33444555666677777777766554332 4556666666677777777776666666654443
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.6e-10 Score=106.08 Aligned_cols=204 Identities=9% Similarity=0.116 Sum_probs=161.2
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTM---ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKE 334 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (535)
..|++++|.+.+.+.... |...-.+| .-.+-..|++++|++.|-.+..- +..+.....-+.+.|-...+..
T Consensus 502 ~ngd~dka~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred ecCcHHHHHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 468999999999998842 33333332 23467889999999999887432 2345566777888899999999
Q ss_pred HHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 335 EVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 335 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
+|++++.+....- ..|....+-+...|-+.|+-.+|.+.+-.--+ -++-+..+..-|..-|....-+++|+.+|++..
T Consensus 576 qaie~~~q~~sli-p~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 576 QAIELLMQANSLI-PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHhcccC-CCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999998877642 22446788999999999999999998876433 234478888888888999999999999999876
Q ss_pred HcCCCCCHhHHHHHHHHHH-ccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 415 EEGGKPNSTSWETLAEGHI-RERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESD 476 (535)
Q Consensus 415 ~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~ 476 (535)
- +.|+..-|..||..|. +.|++.+|+++|++.. ..++-|...+..|++.|...|.
T Consensus 654 l--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h-----rkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 L--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH-----RKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred h--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH-----HhCccchHHHHHHHHHhccccc
Confidence 4 6899999999997765 6899999999999998 3567788889999999988875
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.4e-11 Score=118.67 Aligned_cols=287 Identities=12% Similarity=0.074 Sum_probs=226.7
Q ss_pred CCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHh-hHH
Q 009424 85 NPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVA-SAE 163 (535)
Q Consensus 85 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~-~A~ 163 (535)
+.. +|+.+|..... .+.-+.+....+-++|...+++++|..+|+.+.+..+-.--+..+|.+.+.-+-+.-.+. -|.
T Consensus 334 ~~~-~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCR-EALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHH-HHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 344 78888888443 344556888889999999999999999999999876434445667777765554332222 245
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009424 164 DFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIR 243 (535)
Q Consensus 164 ~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 243 (535)
.+.+..+. .+.+|-++-..|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+..
T Consensus 412 ~Li~~~~~---sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 412 DLIDTDPN---SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHhhCCC---CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 55555554 78999999999999999999999999998864 226789999999999999999999999887654
Q ss_pred CCHHHHHH---HHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchH
Q 009424 244 LDVYSYNI---WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY 320 (535)
Q Consensus 244 pd~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 320 (535)
|...|++ +...|.+.++++.|.-.|+...+-. +.+.+....+...+-+.|+.|+|+++|++...... .|+..-
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~ 560 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCK 560 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhH
Confidence 5555555 5667999999999999999998643 55667777888889999999999999999876433 355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
-..+..+...++.++|+..++++++. .|+. ..+..+...|-+.|+.+.|+.-|..+.+..++..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 56677788899999999999999994 5554 6788899999999999999999999887665543
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.7e-10 Score=101.62 Aligned_cols=299 Identities=12% Similarity=0.056 Sum_probs=208.7
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCCHhHH
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD---VYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd---~~~~~~ll~~~~~~g~~~~a 265 (535)
+++.++|.++|-+|.+.. +-+..+--+|.+.|-+.|..+.|+++++.+.+..--+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467889999999998853 22344556677888889999999999988877521111 12233455667888999999
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc----hHHHHHHHHHhcCCHHHHHHHHH
Q 009424 266 EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV----PYHYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~ 341 (535)
+.+|..+.... ..-......|+..|-...++++|.++-+++.+.+..+..+ .|.-+...+....+.+.|+.++.
T Consensus 127 E~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999888533 2334567788889999999999999999887766555433 35556666667788899999999
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009424 342 LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN 421 (535)
Q Consensus 342 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 421 (535)
+..+..++.-. .--.+.+.....|+++.|.+.++.+.+.++..-+.+...|..+|...|+.++....+.++.+... +
T Consensus 205 kAlqa~~~cvR-Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 205 KALQADKKCVR-ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHhhCcccee-hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 88875544322 22355677788899999999999998887776778888899999999999999999988887433 3
Q ss_pred HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHhcCCCCChhhH
Q 009424 422 STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEE---SDMGSKEAFVALLRQPGYRKEKDY 498 (535)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~~~~~~~~ 498 (535)
...-..+...-....-.+.|..++.+-. .-+|+...+..++..-... |...+-...++.|+...+...+.|
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql------~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQL------RRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHH------hhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 3333344443334444566666555555 3478888888888865433 345555566666665544444444
Q ss_pred H
Q 009424 499 M 499 (535)
Q Consensus 499 ~ 499 (535)
.
T Consensus 356 R 356 (389)
T COG2956 356 R 356 (389)
T ss_pred e
Confidence 3
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=6e-10 Score=101.32 Aligned_cols=286 Identities=13% Similarity=0.044 Sum_probs=213.8
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHH
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGV 268 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~ 268 (535)
.|++..|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+.-+.--.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888877776333 4445555566777888888888888887764355666666777778888888888888
Q ss_pred HHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-------chHHHHHHHHHhcCCHHHHHHHHH
Q 009424 269 FELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR-------VPYHYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~ 341 (535)
.+++.+.. +.+..+......+|.+.|++.....++..|.+.|.-.|. .+|+.+++-....+..+.-...|+
T Consensus 176 v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88877543 566778888888899999999999999988888766553 367777777777777777777777
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009424 342 LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN 421 (535)
Q Consensus 342 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 421 (535)
..... .+-+...-.+++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+-++.+.=++..+.-...... +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 76553 2223344567888888999999999999998888776551 1122334556666666666655543222 4
Q ss_pred HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 422 STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
+..+.+|...|.+++.|.+|.+.|+... ...|+..+|..+-.++...|+.++|.++.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl------~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAAL------KLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH------hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5778889999999999999999999888 6789999999999999999999999998887663
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.7e-10 Score=101.62 Aligned_cols=272 Identities=12% Similarity=0.128 Sum_probs=204.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN--WTTFSTMATMYIKMGQVEK 300 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 300 (535)
-+.+.++|.++|-+|.+.+ +-...+--+|-+.|.+.|..|.|+.+++.+.++.+..-+ ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3568899999999999863 224445567888899999999999999999975433222 2234567778999999999
Q ss_pred HHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch----hhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN----LGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 301 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
|+.+|..+.+.+. .-......++..|-+..+|++|+++-++....+..+.. .-|.-+...+....+++.|+.+++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999976432 23456778899999999999999999999887766654 245566667777789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCC
Q 009424 377 EWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKS 456 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g 456 (535)
+..+...+ .+..--.+.+.+...|+++.|.+.++...+.++.--..+...|..+|.+.|+.++...++..+. +.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~----~~- 278 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM----ET- 278 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----Hc-
Confidence 99887655 5666667888999999999999999999987555456678889999999999999999999998 33
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh-hHHHHHHHh
Q 009424 457 WRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK-DYMSLIGLT 505 (535)
Q Consensus 457 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~L~~~y 505 (535)
.+....-..+...-....-.+.|..++.+-++.. |+. .+.-|++.-
T Consensus 279 -~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~ 325 (389)
T COG2956 279 -NTGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYH 325 (389)
T ss_pred -cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhh
Confidence 3333333444443333334566666666655544 444 555666665
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=3.3e-13 Score=88.45 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH
Q 009424 174 KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM 222 (535)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 222 (535)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.5e-08 Score=94.04 Aligned_cols=378 Identities=10% Similarity=0.060 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCC-HHHHHHHHHH
Q 009424 107 WELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKD-RRVYGALLNA 185 (535)
Q Consensus 107 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~ 185 (535)
..+-.-.+.-...+++..|..+|+..+... ..+...+..-+.+=.++..+..|+.+|++....-|- ...|-..+.+
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd---~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD---YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333333444456778889999999998765 345666777788889999999999999998776343 3567777777
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 265 (535)
=-..|++..|+++|++-.+- .|+...|++.|+.=.+.+.++.|..+|++.+-. .|++.+|--...-=-+.|....+
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 77889999999999988764 799999999999999999999999999998865 58999998888888899999999
Q ss_pred HHHHHHhHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCH---HHHHHH-
Q 009424 266 EGVFELMKVDKAV-NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKK---EEVYRV- 339 (535)
Q Consensus 266 ~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~---~~a~~~- 339 (535)
+++|+......|- .-+...+.+....=.++..++.|.-+|+-..+.-++-. ...|.....---+-|+. ++++--
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999998863221 11223344444444567788899989888776533211 23444444444444553 333322
Q ss_pred ----HHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC-HHHHHHHHH--------HHHHcCChhHH
Q 009424 340 ----WNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD-PRIANLMMS--------WYVKEGNFDKA 406 (535)
Q Consensus 340 ----~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~--------~~~~~g~~~~A 406 (535)
|+.+...+ ..|-.+|--.++.-...|+.+...++|+.++..-++.. ...|...|- .-....+++.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 22222221 12335666677777777888888888888775432211 112222221 11235677778
Q ss_pred HHHHHHHHHcCCCCC-HhH----HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 009424 407 EAFFNSIIEEGGKPN-STS----WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
.++|+...+ +.|. ..| |-.....-.++.+...|.+++..++ |..|-..+|...|..=.+.+.++..+
T Consensus 386 r~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI------G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 386 RQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI------GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh------ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 888877776 3343 233 3333444456777888888888887 77888888888887777778888888
Q ss_pred HHHHHHhcCCCCChhhHHH
Q 009424 482 AFVALLRQPGYRKEKDYMS 500 (535)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~ 500 (535)
.++++.++-+|.+-.+|..
T Consensus 458 kLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred HHHHHHHhcChHhhHHHHH
Confidence 8888888877776554433
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.5e-09 Score=97.37 Aligned_cols=283 Identities=10% Similarity=0.072 Sum_probs=146.8
Q ss_pred ccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC--CCCHHHHHHHHHHHHHcCCHhHHH
Q 009424 119 FRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGNAE 196 (535)
Q Consensus 119 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 196 (535)
.|+|..|.++...-.+.+ +.....+.....+--..|+.+.|-+++.+.-+. .++..+.-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 366666666666655554 333334444445555666666666666665554 334455555556666666666666
Q ss_pred HHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhcCCCHhHHHHHH
Q 009424 197 LLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV-------YSYNIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 197 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~-------~~~~~ll~~~~~~g~~~~a~~~~ 269 (535)
.-.+++.+.+ +-+.........+|.+.|++.+...+...|.+.|+-.|. .+|..+++-+...+..+.-...+
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 6666665554 223455566666666666666666666666666644332 34555555555555555544455
Q ss_pred HHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 009424 270 ELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 349 (535)
+..... .+.++..-.+++.-+.++|+.++|.++.++..+++..|... ..-.+.+-++.+.-++..+.-....+.
T Consensus 253 ~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 253 KNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 554432 23344455555556666666666666666655554444311 112233444444444444433332222
Q ss_pred CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 350 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
-+ ..+.++...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.+++++..
T Consensus 327 ~p-~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DP-LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred Ch-hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11 3344555555555555555555554332 23445555555555555555555555554443
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=6.5e-13 Score=87.07 Aligned_cols=50 Identities=30% Similarity=0.596 Sum_probs=46.1
Q ss_pred cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 009424 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS 258 (535)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 258 (535)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=7.6e-09 Score=92.44 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhCCCCchh-hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 333 KEEVYRVWNLYRSVFPGVTNL-GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
..-|.+.|...-..+..-|.. ---++.+.+.-..++++....++.+..--..-|...+ .+..+++..|.+.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 444555555444443333331 2234555555556677777777766543333233333 47788999999999999998
Q ss_pred HHHHcCCCCCHhHHHH-HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH-HHHHhcCChhhHHHHHHHHhc
Q 009424 412 SIIEEGGKPNSTSWET-LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF-KACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 412 ~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~ 489 (535)
++....++ |..+|-+ +.+.|.+++.++.|++++-++. ...+..++..+| .-|.+.+.+--|-+.|+.+..
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~-------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN-------TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC-------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 87765555 6666655 4578889999999998887766 223444444444 579999999999999999998
Q ss_pred CCCCCh
Q 009424 490 PGYRKE 495 (535)
Q Consensus 490 ~~~~~~ 495 (535)
.+|.|.
T Consensus 490 lDP~pE 495 (557)
T KOG3785|consen 490 LDPTPE 495 (557)
T ss_pred cCCCcc
Confidence 888874
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=2.6e-11 Score=119.95 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHH
Q 009424 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVN 463 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~ 463 (535)
.|++.+|.+++++-.-.|+.+.|..++.+|++.|+..+..-|..++-+ .+....+..+++.|. ..|+.|+..|
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq----e~gv~p~seT 273 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ----EKGVQPGSET 273 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH----HhcCCCCcch
Confidence 355566666666666666666666666666666655555555555554 445555555555555 5566666666
Q ss_pred HHHHHHHHHh
Q 009424 464 VINFFKACEE 473 (535)
Q Consensus 464 ~~~ll~a~~~ 473 (535)
+.-.+..|..
T Consensus 274 ~adyvip~l~ 283 (1088)
T KOG4318|consen 274 QADYVIPQLS 283 (1088)
T ss_pred hHHHHHhhhc
Confidence 5555555444
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=5.2e-10 Score=110.96 Aligned_cols=254 Identities=10% Similarity=0.030 Sum_probs=174.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCC
Q 009424 92 SVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPD 171 (535)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 171 (535)
.++-.|...|+.|+..||.++|..|+..|+++.|- +|..|.-.. .+....+++.++......++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccccccccCCC-------C
Confidence 56778889999999999999999999999999998 999998887 8888999999999999999888776 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHH-HHH-------CCCCcCc--------------chHHHHHHHHHhcCChhH
Q 009424 172 TLKDRRVYGALLNAYVRARMRGNAELLIDK-MRD-------KGYAVHS--------------LPYNVMMTLYMKIKEYDE 229 (535)
Q Consensus 172 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~--------------~~~~~li~~~~~~g~~~~ 229 (535)
|...+|+.|..+|.+.||+.. .+..++ |.. .|+.--. ..-...+.-..-.|-++.
T Consensus 81 --p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 --PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 788999999999999999765 222222 221 1211000 001122333344455555
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 230 VESMVSEMKEKG-IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 230 a~~~~~~m~~~g-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (535)
+++++..+.... ..|-.+ +++-+..... -.+++......-.+ .|+..++.+++..-.-+|+.+.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 555554443321 111111 2444433222 23333333332112 578888888888888888888888888888
Q ss_pred HhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH
Q 009424 309 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI 368 (535)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 368 (535)
++.|+..+..-|-.++-+ .++...+..+++-|...|+.|+..|+.--+-.+..+|..
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 888887777655555544 777788888888888888888888887777777776553
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.9e-09 Score=97.60 Aligned_cols=385 Identities=13% Similarity=0.032 Sum_probs=178.2
Q ss_pred HHHHHhccCCCCccHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHH
Q 009424 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLT-KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIA 154 (535)
Q Consensus 76 li~~~~~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~ 154 (535)
.-+-|-++|.++ +|+..|.+... ..|| +.-|.-.-.+|...|+|++..+--...++.. +.-+..+.....++-
T Consensus 121 ~GN~~f~~kkY~-eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 121 KGNKFFRNKKYD-EAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---PDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhcccHH-HHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---cHHHHHHHHHHHHHH
Confidence 334566788888 88888888877 6777 6666677777788888888887776666654 222344445555666
Q ss_pred hhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH---------HHHCC--CCcCcchHHHHHHHHHh
Q 009424 155 KVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDK---------MRDKG--YAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 155 ~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~g--~~p~~~~~~~li~~~~~ 223 (535)
..|++.+|.. -+|-.+++.++....-.--+.+++.+ |.+.+ +-|+....++....+..
T Consensus 195 ~lg~~~eal~-----------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 195 QLGKFDEALF-----------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred hhccHHHHHH-----------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 6677776632 23334444444333333333333322 11111 12222222222211110
Q ss_pred c--------C-----ChhHHHHHHH------------HHHHcC----CCCCHH---------HHHHHHH--HHhcCCCHh
Q 009424 224 I--------K-----EYDEVESMVS------------EMKEKG----IRLDVY---------SYNIWLS--SCGSQGSTE 263 (535)
Q Consensus 224 ~--------g-----~~~~a~~~~~------------~m~~~g----~~pd~~---------~~~~ll~--~~~~~g~~~ 263 (535)
. + ...++++.+. .+.+.. ..++.. .-..++. -+.-.|+.-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 0 0 0111111111 111000 000000 0111111 122345555
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
.|..-|+..++-. +.+...|--+..+|....+.++.+..|+...+-.+ -|..+|..-.+.+.-.+++++|..=|++.
T Consensus 344 ~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 344 GAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555321 11222244444455555556666666655544322 13444544445555555555665555555
Q ss_pred HhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---
Q 009424 344 RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP--- 420 (535)
Q Consensus 344 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--- 420 (535)
....+. +...|..+.-+..+.+.+++++..|++.++. ++-.+.+|+.....+...++++.|.+.|+...+....-
T Consensus 421 i~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 421 ISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 553222 1234444444444555566666666555443 22245555555555666666666666665555421111
Q ss_pred --CHhHHHHH-HHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 421 --NSTSWETL-AEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 421 --~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
+...+..= +-.+.-.+++..|.+++.++. .+.|- ...|.++...-...|+.++|.++|++..
T Consensus 499 ~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~------e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWKEDINQAENLLRKAI------ELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccchhhhhhhHhhhchhhhHHHHHHHHHHHH------ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111000 000111245555566665555 23332 2345555555555556666666665543
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.8e-08 Score=95.70 Aligned_cols=412 Identities=12% Similarity=0.073 Sum_probs=281.6
Q ss_pred HHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhH----------
Q 009424 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASD---------- 145 (535)
Q Consensus 76 li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---------- 145 (535)
+..++.-.|... .|..+...-.- ..-|..+.......+.+.++|++|..+++.......++.-+...
T Consensus 55 ~aq~l~~~~~y~-ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~ 131 (611)
T KOG1173|consen 55 LAQVLYLGRQYE-RAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSA 131 (611)
T ss_pred HHHHHHhhhHHH-HHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcc
Confidence 555566666666 66655554322 34477777788888899999999999988321111001111111
Q ss_pred -----HHH-------HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHc---------------------CCH
Q 009424 146 -----AAI-------QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRA---------------------RMR 192 (535)
Q Consensus 146 -----~~~-------li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~---------------------g~~ 192 (535)
.+. -...|......++|+..|.+... .|+..+.++...-... .+.
T Consensus 132 ~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~ 209 (611)
T KOG1173|consen 132 GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDV 209 (611)
T ss_pred cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHH
Confidence 011 12234555667778877777655 4555554443322111 111
Q ss_pred hHHHHHHHHH----HHC------------CCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 193 GNAELLIDKM----RDK------------GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 193 ~~A~~~~~~m----~~~------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
+.-..+|+-- .+. +..-+......-.+-|...+++.+..++++...+.. ++....+..-|.++
T Consensus 210 e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l 288 (611)
T KOG1173|consen 210 ERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACL 288 (611)
T ss_pred HHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHH
Confidence 1122222211 000 111223333444556677889999999999998874 56667777777888
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 335 (535)
...|+..+-..+=.++.+. .+....+|-++.-.|...|+..+|++.|.+... +.|. ...|-.+...|+-.|..++
T Consensus 289 ~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHH
Confidence 9999988877777788864 477788999999999999999999999998743 3332 4479999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 336 VYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 336 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
|+..+...-+..+.... -+--+.--|.+.++++.|.++|.+.....+. |+.+.+-+.-.....+.+.+|..+|+...+
T Consensus 365 AmaaY~tAarl~~G~hl-P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHL-PSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHhccCCcc-hHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 99999988775433221 1233445678899999999999998765544 888999988888889999999999988763
Q ss_pred --cCCCC----CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 416 --EGGKP----NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 416 --~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
+.+.+ -..+++.|..+|.+.+.+++|+..+++... . .+-|..++.++.-.+...|+++.|...|.+.+-
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~----l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL----L-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH----c-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 11111 345678888999999999999999999992 2 234677888888889999999999999999887
Q ss_pred CCCCChhhHHHHHHH
Q 009424 490 PGYRKEKDYMSLIGL 504 (535)
Q Consensus 490 ~~~~~~~~~~~L~~~ 504 (535)
..+.+..+-..|-.+
T Consensus 518 l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 518 LKPDNIFISELLKLA 532 (611)
T ss_pred cCCccHHHHHHHHHH
Confidence 776654444444433
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=1.9e-09 Score=97.63 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS 255 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~ 255 (535)
...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4456666666667777777777776665542 2234555666666666666666666666666543 2234455555556
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHH
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (535)
+...|++++|.+.++..............+..+...|...|++++|...|++..+... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666654211122233444455555555555555555555544221 122344444445555555555
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 336 VYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 336 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
|...+++.....+ .+...+..+...+...|+.+.|..+.+.
T Consensus 188 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555554444311 1122233333444444444444444443
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=2.1e-09 Score=97.38 Aligned_cols=198 Identities=18% Similarity=0.177 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
.+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++.....+. +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 34444444444444444444444443321 112233444444444444455554444444443222 1123344444444
Q ss_pred hcCCHhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSS-YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
..|++++|.+.++.+.+.... .....+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555554432211 12234444455555555555555555555543222 3444555555555555566665
Q ss_pred HHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 443 SCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 443 ~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
+.++++. .. ...+...+..+...+...|+.++|..+.+.+.+
T Consensus 190 ~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQ----QT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHH----Hh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5555555 22 122334444445555555555555555555443
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=5.5e-09 Score=106.74 Aligned_cols=267 Identities=8% Similarity=-0.030 Sum_probs=176.1
Q ss_pred CcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---------cCCCHhHHHHHHHHhHhC
Q 009424 210 HSLPYNVMMTLYMK-----IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG---------SQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 210 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~ 275 (535)
+...|...+.+-.. .+.+++|++.|++..+... -+...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34455566655322 1245788888888887632 23444544444333 234578899999888863
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhh
Q 009424 276 KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354 (535)
Q Consensus 276 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 354 (535)
. +.+...+..+...+...|++++|...|++..+.. |+ ...|..+...+...|++++|+..+++..+..+.....
T Consensus 334 d--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~- 408 (553)
T PRK12370 334 D--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA- 408 (553)
T ss_pred C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh-
Confidence 2 5567788888888888999999999999887753 43 4567778888889999999999999988866654332
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+..++..+...|++++|...++++.+....-++..+..+..+|...|+.++|...++++...... +...++.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 23344456667889999999888776543325566777788888899999999998887654221 34445566666677
Q ss_pred cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 435 ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
.| ++|...++.+.+ .....|...-+..++ +.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~---~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLE---SEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHH---HhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 76 477777777663 223344434443333 3444555555555 7766654
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=7.8e-09 Score=105.59 Aligned_cols=263 Identities=11% Similarity=-0.006 Sum_probs=182.9
Q ss_pred CCHHHHHHHHHHHHH-----cCCHhHHHHHHHHHHHCCCCcC-cchHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 009424 174 KDRRVYGALLNAYVR-----ARMRGNAELLIDKMRDKGYAVH-SLPYNVMMTLYMK---------IKEYDEVESMVSEMK 238 (535)
Q Consensus 174 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 238 (535)
.+...|...+.+-.. .++.++|..+|++..+.. |+ ...|..+..++.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455666666665322 134678999999888763 43 4455555444432 244789999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc
Q 009424 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV 318 (535)
Q Consensus 239 ~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 318 (535)
+.+ +-+...+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+.. |+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~ 406 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRA 406 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCh
Confidence 875 3467778888888889999999999999998642 4556788888999999999999999999997753 4432
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 319 -PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 319 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
.+..+...+...|++++|+..+++.....+.-+...+..+..++...|+.++|...+.++...... +....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHH
Confidence 333444556678999999999999876532223345667778888999999999999887554322 444556666677
Q ss_pred HHcCChhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 398 VKEGNFDKAEAFFNSIIEE-GGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+..| ++|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++.
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 7777 5888888877652 222333333 44445566776666655 7777
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=3.7e-07 Score=88.14 Aligned_cols=403 Identities=12% Similarity=0.123 Sum_probs=257.7
Q ss_pred cchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcC----CCcccCHhHH
Q 009424 71 IKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRG----ERFRLSASDA 146 (535)
Q Consensus 71 ~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~ 146 (535)
-.|...|......|-|+ -++.+|++.++ +.|.. -.--|.-++..+++++|.+.+..++... ...+.+-..+
T Consensus 139 rIW~lyl~Fv~~~~lPe-ts~rvyrRYLk--~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPE-TSIRVYRRYLK--VAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred cchHHHHHHHHhCCChH-HHHHHHHHHHh--cCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 36888888888888998 89999999876 44443 5667888899999999999998887543 1123444555
Q ss_pred HHHHHHHHhhCCH---hhHHHHHhhCCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHH
Q 009424 147 AIQLDLIAKVHGV---ASAEDFFLSLPDTLKDR--RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLY 221 (535)
Q Consensus 147 ~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 221 (535)
.-+.+..++.-+. -....++..+....+|. ..|++|.+-|.+.|.++.|.++|++-...- .++.-|+.+.++|
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 6666665554332 23445666666655554 589999999999999999999999877642 2444556666655
Q ss_pred HhcC----------------------ChhHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHhcCCCHhHHHHH
Q 009424 222 MKIK----------------------EYDEVESMVSEMKEKGI-----------RLDVYSYNIWLSSCGSQGSTEKMEGV 268 (535)
Q Consensus 222 ~~~g----------------------~~~~a~~~~~~m~~~g~-----------~pd~~~~~~ll~~~~~~g~~~~a~~~ 268 (535)
++-. +++-.+.-|+.+...+. +-++.+|..-+. ...|+..+-...
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHH
Confidence 5321 12222333443333221 112333333222 234566777777
Q ss_pred HHHhHhCCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC---cchHHHHHHHHHhcCCHHHHHHH
Q 009424 269 FELMKVDKAVNPN------WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD---RVPYHYLLSLYGSVGKKEEVYRV 339 (535)
Q Consensus 269 ~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~ 339 (535)
+.+..+. +.|- ...|..+...|-..|+++.|+.+|++..+-..+.- ..+|......-.++.+++.|+.+
T Consensus 370 yteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 370 YTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8777752 3332 23688889999999999999999998865432211 23566666677778889999998
Q ss_pred HHHHHhhCCC----------Cc-------hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 009424 340 WNLYRSVFPG----------VT-------NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN 402 (535)
Q Consensus 340 ~~~m~~~~~~----------~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 402 (535)
.+.....-.. |. ...|...++.--..|-++..+.+++.+++..+. ++.+.-.....+-.+.-
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKY 526 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHH
Confidence 8876542111 11 124566666667778888999999998877665 44333333333445666
Q ss_pred hhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHc---cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHH--HHhcCC
Q 009424 403 FDKAEAFFNSIIEEGGKPN-STSWETLAEGHIR---ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKA--CEEESD 476 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a--~~~~g~ 476 (535)
++++.+++++-...-.-|+ ...|+..+.-+.+ .-..+.|..+|+++. + |.+|...-+..|+-| =-+.|.
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL----~-~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL----D-GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----h-cCCHHHHHHHHHHHHHHHHHhhH
Confidence 7888888876555323344 3457776665553 235788899999988 4 666655433333322 234577
Q ss_pred hhhHHHHHHHHhcC
Q 009424 477 MGSKEAFVALLRQP 490 (535)
Q Consensus 477 ~~~a~~~~~~~~~~ 490 (535)
...|..++++....
T Consensus 602 ar~amsiyerat~~ 615 (835)
T KOG2047|consen 602 ARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888888886543
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=1.4e-07 Score=93.28 Aligned_cols=289 Identities=14% Similarity=0.149 Sum_probs=162.0
Q ss_pred HHHHhhCCHhhHHHHHhhCCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH-h-----
Q 009424 151 DLIAKVHGVASAEDFFLSLPDTLKDRR-VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM-K----- 223 (535)
Q Consensus 151 ~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~----- 223 (535)
..+...|++++|.+.++.-.....|.. ........+.+.|+.++|..+|..+.+++ |+-..|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344555666666666655444434443 33455566667777777777777777765 44444433333332 1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHh-HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009424 224 IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE-KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302 (535)
Q Consensus 224 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (535)
..+.+...++|+++...- |......-+.-.+..-..+. .+..++..+.+ .|+++ +|+.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR-KGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHh-cCCch---HHHHHHHHHcChhHHHHHH
Confidence 124556666666665542 22222222211111111222 23334444443 24432 5555555555544444444
Q ss_pred HHHHHHHhc----c----------cCCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 303 ESLRRVESR----I----------TGRDRV--PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 303 ~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
+++...... + -.|... ++.-+.+.|...|++++|+++.++.....|.. ...|..-...+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHCC
Confidence 455444322 0 112332 33445666777888888888888777754332 245667777777888
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh------HH--HHHHHHHHccccH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNST------SW--ETLAEGHIRERRI 438 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~ 438 (535)
++++|.+.++........ |-.+-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 888888888887766655 66677777777788888888888887776654333211 12 3345677788888
Q ss_pred HHHHHHHHHhH
Q 009424 439 LEALSCLKGAF 449 (535)
Q Consensus 439 ~~A~~~~~~m~ 449 (535)
..|++-|....
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777666655
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.5e-08 Score=93.06 Aligned_cols=285 Identities=11% Similarity=0.096 Sum_probs=225.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
++.....-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.+|++.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 45555566667788899999999999998874 6677778888889999999999888888888773 456788988888
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCH
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (535)
-|...|..++|++.|.+... +.|. ...|-.+...|+-.|..|.|...+...-+--..-.. .+--+---|.+.+..
T Consensus 321 YYl~i~k~seARry~SKat~---lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT---LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh---cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHHHHHhccH
Confidence 88888999999999998763 2333 347889999999999999999988877553221111 122233457788999
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC--CC----CCHHHHHHHHHHHHHcCChhHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVK--SS----YDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
+.|.++|.+.....|. |....+-+.-.....+.+.+|..+|+..+..- .. .-..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998885444 34566666666677889999999998776211 11 13456788999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE 473 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~ 473 (535)
..|++......+ |..++.++.-.|...|+++.|++.|.+.. .+.||..+...++..+..
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL------~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL------ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH------hcCCccHHHHHHHHHHHH
Confidence 999999887555 89999999999999999999999999999 899999988888875544
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.7e-09 Score=95.56 Aligned_cols=228 Identities=13% Similarity=0.045 Sum_probs=141.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhc
Q 009424 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS-YNIWLSSCGS 258 (535)
Q Consensus 180 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~-~~~ll~~~~~ 258 (535)
+.|-.+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+..+...|+.+|.+-++. .|-.+| ..-..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45556677777777777777665554 345566666777777777777777777666554 233333 3344555666
Q ss_pred CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHH
Q 009424 259 QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYR 338 (535)
Q Consensus 259 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 338 (535)
.++.++|.++++...+.. +.++.....+...|.-.++.+.|+++++++.+.|+. +...|+.+--+|.-.++++-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 666777777777666532 334455555556666667777777777777666653 55566666666666666777776
Q ss_pred HHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 339 VWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 339 ~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.|.+....-..|+. ..|-.+-......|++..|.+.|+..+..+.. +...+|.|.-.-.+.|+++.|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666554333333 34555555566667777777777666655433 455666666666667777777777666554
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=4e-09 Score=93.22 Aligned_cols=228 Identities=14% Similarity=0.011 Sum_probs=129.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh
Q 009424 215 NVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294 (535)
Q Consensus 215 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 294 (535)
+.+..+|.+.|.+.+|.+.|+.-++. .|-+.||..|-+.|.+..+.+.|..++.+-... ++-|+....-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45566666666666666666666555 345555666666666666666666666666532 34444444445555556
Q ss_pred cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHH
Q 009424 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
.++.++|.++++...+.. ..++.....+..+|.-.++++-|+..|+++.+.|...+ ..|+.+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp-eLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP-ELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh-HHHhhHHHHHHhhcchhhhHHH
Confidence 666666666666655431 12344444455555556666666666666666555433 3455555555566666666666
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 375 FEEWLSVKSSYD--PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 375 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|.+....--.|+ ..+|-.+-......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++.+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 655554333232 234444555555556666666666655544333 45555555555556666666666666555
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=3.8e-06 Score=81.40 Aligned_cols=406 Identities=9% Similarity=0.076 Sum_probs=264.0
Q ss_pred cchHHHHHHHhccCCCCccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHH
Q 009424 71 IKWNAIFRKLSLMDNPQLGSASVLNDWEKG-GRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ 149 (535)
Q Consensus 71 ~~~n~li~~~~~~g~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~l 149 (535)
..|-.-+..+...|+.- .....|++.++. .+.-....|...++...+.+-.+-+..+++.-++.. +...+--
T Consensus 103 RIwl~Ylq~l~~Q~~iT-~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~------P~~~eey 175 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLIT-RTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA------PEAREEY 175 (835)
T ss_pred HHHHHHHHHHHhcchHH-HHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC------HHHHHHH
Confidence 34656666666777777 777777776554 333444567778888888888889999999887754 4446777
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCC--------CCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHHCCCCcC--cchHHH
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDT--------LKDRRVYGALLNAYVRARMRGN---AELLIDKMRDKGYAVH--SLPYNV 216 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~--~~~~~~ 216 (535)
|..+++.+++++|-+.+..+... +.+-..|+-+-+..+++-+.-. ...+++.+..+ -+| ...|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 88899999999999999888764 2234567777777666544332 33344444432 233 357999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----------------------CHhHHHHHHHHhHh
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG----------------------STEKMEGVFELMKV 274 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g----------------------~~~~a~~~~~~~~~ 274 (535)
|.+.|.+.|.+++|.++|.+..+.- ..+.-|+.+.++|+.-. +++....-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999887763 24444555555554321 23334444444443
Q ss_pred CCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC------cchHHHHHHHHHhcCCHHHHHH
Q 009424 275 DKAV----------NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD------RVPYHYLLSLYGSVGKKEEVYR 338 (535)
Q Consensus 275 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~a~~ 338 (535)
...+ +.++..|..-+.. ..|+..+-...|.+..+. +.|- ...|..+...|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 2111 2233344433332 346677777777777643 3332 3368888999999999999999
Q ss_pred HHHHHHhhCCCC-ch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC----------C-------CHHHHHHHHHHHH
Q 009424 339 VWNLYRSVFPGV-TN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS----------Y-------DPRIANLMMSWYV 398 (535)
Q Consensus 339 ~~~~m~~~~~~~-~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~li~~~~ 398 (535)
+|++........ +. .+|..-...=.+..+++.|.++.+......-. | +..+|...++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 999986642221 11 34444455556677888898888876532111 1 3446777777777
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHh-c--
Q 009424 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEE-E-- 474 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~-~-- 474 (535)
..|-++....+++++.+..+. ++..-......+-.+.-++++.+++++-+ ..=-.|+. ..|+..+.-+.+ -
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI----~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGI----SLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCC----ccCCCccHHHHHHHHHHHHHHHhcC
Confidence 889999999999999986554 22222222333446677899999998877 22223444 367766664432 2
Q ss_pred CChhhHHHHHHHHhcCCCCChh
Q 009424 475 SDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
...+.|+.+|++.++ |.+|..
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHH
Confidence 368999999999999 444544
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=1.3e-07 Score=93.59 Aligned_cols=291 Identities=14% Similarity=0.087 Sum_probs=202.1
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhc----
Q 009424 184 NAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSY-NIWLSSCGS---- 258 (535)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~-~~ll~~~~~---- 258 (535)
..+...|++++|++.+++-... +.............+.+.|+.++|..++..+.+.+ ||...| ..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4467889999999999875543 33334455667788999999999999999999986 455554 444444422
Q ss_pred -CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 259 -QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV-EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 259 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
..+.+.-.++++++... -|.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|......+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 23577888899988754 24333333332222222222 2445556666666653 4577777777766666666
Q ss_pred HHHHHHHHhh----C---------CCCch-h--hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 009424 337 YRVWNLYRSV----F---------PGVTN-L--GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE 400 (535)
Q Consensus 337 ~~~~~~m~~~----~---------~~~~~-~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 400 (535)
.+++...... + ..++. . ++.-+...|-..|++++|.++++..++..+. .+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 6666665432 1 12222 2 4456677788999999999999999887644 478889999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH------HH--HHHHHHHH
Q 009424 401 GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV------NV--INFFKACE 472 (535)
Q Consensus 401 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~------~~--~~ll~a~~ 472 (535)
|++++|.+.++.....+.. |...=+-.+..+.++|+.++|.+++.... +.+..|-.. .| .....+|.
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft----r~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFT----REDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhc----CCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987665 77777778888999999999999999888 555444322 22 23345888
Q ss_pred hcCChhhHHHHHHHHhc
Q 009424 473 EESDMGSKEAFVALLRQ 489 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~ 489 (535)
+.|++..|.+-|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99998888876665543
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=2.8e-06 Score=84.16 Aligned_cols=421 Identities=13% Similarity=0.050 Sum_probs=271.0
Q ss_pred cCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HccChHHH-------------------HHHHHHHHh--cCCC
Q 009424 83 MDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELR---KFRRYKHA-------------------LEVYDWMNN--RGER 138 (535)
Q Consensus 83 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a-------------------~~~~~~~~~--~g~~ 138 (535)
.+++. +++.-+..-..++..-++.++..+.+.+. ..++.++. ....-.+.+ .+..
T Consensus 240 ~~~~~-~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 240 LSGPK-EAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCch-HHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 35555 66766666666666666666666555433 22333332 222111111 1223
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHH
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVM 217 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 217 (535)
+..+..++-.+.-+...+|+++.+-+.|++.... ......|+.+-..|...|.-..|+.+.++-....-.|+..+--.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 6678888889999999999999999999987643 345678999999999999999999999876554323444443333
Q ss_pred HH-HHH-hcCChhHHHHHHHHHHH--cCCC--CCHHHHHHHHHHHhcC----C-------CHhHHHHHHHHhHhCCCCCC
Q 009424 218 MT-LYM-KIKEYDEVESMVSEMKE--KGIR--LDVYSYNIWLSSCGSQ----G-------STEKMEGVFELMKVDKAVNP 280 (535)
Q Consensus 218 i~-~~~-~~g~~~~a~~~~~~m~~--~g~~--pd~~~~~~ll~~~~~~----g-------~~~~a~~~~~~~~~~~~~~~ 280 (535)
+. .|. +.+..++++++-.+... .+.. .....|..+--+|... . ...++.+.+++..+...-.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33 333 34567777776666555 1111 1223333333333321 1 23467778888876555566
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----c-----
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV----T----- 351 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~----- 351 (535)
++..|-++ -|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|+.+.+......+.- +
T Consensus 479 ~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 65555554 478889999999999999887777788999999999999999999999988765533220 0
Q ss_pred ----------hhhHHHHHHHHHh---------cC--------------CHhhHHHHHHHH----H----hcC--------
Q 009424 352 ----------NLGYHAMISSLAR---------IG--------------DIEGMEKIFEEW----L----SVK-------- 382 (535)
Q Consensus 352 ----------~~~~~~ll~~~~~---------~g--------------~~~~a~~~~~~~----~----~~~-------- 382 (535)
..|...++...-. .| +..++.....++ . ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0122222221110 00 011111111100 0 011
Q ss_pred ---CCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhcc
Q 009424 383 ---SSYD------PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG 453 (535)
Q Consensus 383 ---~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (535)
..|+ ...|....+.+.+.+..++|...+.+.....+. ....|......+...|++++|.+.|..+.
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al---- 711 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVAL---- 711 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHH----
Confidence 0112 234556677888889999998888877764222 45556666677778899999999999998
Q ss_pred CCCCCCCHH-HHHHHHHHHHhcCChhhHHH--HHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 454 AKSWRPKPV-NVINFFKACEEESDMGSKEA--FVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 454 ~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
-+.|+.+ ..+++...+...|+...+.. ++..+.+.++.....|-.|..++-+.|+...
T Consensus 712 --~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 712 --ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred --hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 6778765 66777788889998777777 9999999999998899999999877666554
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=6.4e-07 Score=83.89 Aligned_cols=222 Identities=15% Similarity=0.149 Sum_probs=174.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009424 220 LYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299 (535)
Q Consensus 220 ~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 299 (535)
.+.-.|+...|.+-|+...+....++. .|--+..+|....+-++..+.|+....-. +-|..+|..-..++.-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHH
Confidence 344568889999999999887654443 26666677999999999999999998533 446668888888888899999
Q ss_pred HHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 300 KAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 300 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
+|..=|++.... .| +...|.-+--+..+.++++++...|++.+...|... ..|+.....+...++++.|.+.|+..
T Consensus 412 ~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~-Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP-EVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999998763 33 344666666666778899999999999999877755 57899999999999999999999998
Q ss_pred HhcCCCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 379 LSVKSSY-------DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 379 ~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
++..... .+.+.-+++..- =.+++..|..++++..+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8654331 122222233222 238999999999999987555 56789999999999999999999999987
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=1.7e-07 Score=91.59 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcC---CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CC--CC-
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVK---SSYD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEE----GG--KP- 420 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p- 420 (535)
++.+...|+..+++++|..+++...+.- +.++ ..+++.|...|.+.|++++|+++|++.... +. .+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 4455555566666666666555443211 1111 345666666666677777666666665431 11 11
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSW-RPK-PVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~-~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
....++.|...|.+.+++++|.++|.+.....+..|. .|+ ..+|..|..+|...|+++.|.++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1344556666666666666666666665533322221 122 2567777777777777777777666654
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=1.3e-07 Score=92.47 Aligned_cols=238 Identities=17% Similarity=0.209 Sum_probs=116.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHhcCCCHhHHHHHHHHhHhC----CC-CC
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEK-----GI-RLDVYS-YNIWLSSCGSQGSTEKMEGVFELMKVD----KA-VN 279 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~pd~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~ 279 (535)
.+...+...|...|+++.|..++.+.++. |. .|.+.+ .+.+...|...+++++|..+|+.+... .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444556666666666666666655443 11 122222 122444555566666666666655421 01 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----ccC-CCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC
Q 009424 280 PN-WTTFSTMATMYIKMGQVEKAEESLRRVESR-----ITG-RDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSV---FP 348 (535)
Q Consensus 280 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~ 348 (535)
|. ..+++.|-..|.+.|++++|...+++..+- |.. |.+. .++.+...|...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 223444555566666666666666554221 111 1111 2344445555566666666666544331 11
Q ss_pred CCch----hhHHHHHHHHHhcCCHhhHHHHHHHHHhcC----CC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-
Q 009424 349 GVTN----LGYHAMISSLARIGDIEGMEKIFEEWLSVK----SS--Y-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEE- 416 (535)
Q Consensus 349 ~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 416 (535)
.++. .+++.+...|-..|++++|.++|+.++... .. + ....++.+...|.+.+++++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2221 355566666666666666666666554321 11 1 1233445555556666666666666554432
Q ss_pred -CCCCCH----hHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 417 -GGKPNS----TSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 417 -~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-..|+. .+|..|...|.+.|++++|+++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 233332 345555566666666666666655554
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=4.2e-06 Score=81.26 Aligned_cols=309 Identities=11% Similarity=0.027 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcch---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLP---YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNI- 251 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~- 251 (535)
...|..+...+...|+.+++.+.+.+..+.. +++... .......+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 4456666666667777777766666655432 122221 2222334567788888888888877763 233334332
Q ss_pred --HHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHh
Q 009424 252 --WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329 (535)
Q Consensus 252 --ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (535)
........+..+.+.+.+..... ..+.+......+...+...|++++|...+++..+..+ .+...+..+...|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 22222234555555555554221 1223334455666778888899999998888876532 345567777788888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CCHHHH-H--HHHHHHHHcCC
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YDPRIA-N--LMMSWYVKEGN 402 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~-~--~li~~~~~~g~ 402 (535)
.|++++|+..+++.....+.++. ..|..+...+...|++++|..++++....... +..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 89999999988887765432221 23456777888889999999999887544331 112111 1 33344444554
Q ss_pred hhHHHHH--H-HHHHHcCC-CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccC---CCCCCCHHHHHHHHH--HHHh
Q 009424 403 FDKAEAF--F-NSIIEEGG-KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGA---KSWRPKPVNVINFFK--ACEE 473 (535)
Q Consensus 403 ~~~A~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~g~~p~~~~~~~ll~--a~~~ 473 (535)
.+.+.+. . ..-..... ............++...|+.++|.++++.+...... .+... ..+-..++. ++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~~~l~A~~~~~ 319 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPA-RDVGLPLAEALYAFA 319 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhH-HhhhHHHHHHHHHHH
Confidence 4433333 1 11111100 011122234666777889999999999988732211 11111 112222333 4567
Q ss_pred cCChhhHHHHHHHHhcC
Q 009424 474 ESDMGSKEAFVALLRQP 490 (535)
Q Consensus 474 ~g~~~~a~~~~~~~~~~ 490 (535)
.|++++|.+.+...+..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999988887654
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=8.2e-07 Score=83.10 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
|..+...|.+.|+.++|...|++..+..+ .+...|+.+...+...|++++|+..|++..+..+.. ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 44444445555555555555555544221 123445555555555555555555555555433221 2344444455555
Q ss_pred cCCHhhHHHHHHHHHhc
Q 009424 365 IGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~ 381 (535)
.|++++|.+.++...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3.6e-05 Score=74.20 Aligned_cols=403 Identities=11% Similarity=0.025 Sum_probs=224.2
Q ss_pred HHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH--HHHHH-
Q 009424 77 FRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI--QLDLI- 153 (535)
Q Consensus 77 i~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~--li~~~- 153 (535)
++-+..+|+++ +|+..-+.++..+ +-|...+.+=+-++.+.+.+++|+.+.+. .+ . ..+.+. +=.+|
T Consensus 19 ln~~~~~~e~e-~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~--~---~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 19 LNRHGKNGEYE-EAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG--A---LLVINSFFFEKAYC 88 (652)
T ss_pred HHHhccchHHH-HHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc--h---hhhcchhhHHHHHH
Confidence 45566778888 9999999998854 34566778888889999999999965443 22 0 011111 23344
Q ss_pred -HhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH-hcCChhHHH
Q 009424 154 -AKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM-KIKEYDEVE 231 (535)
Q Consensus 154 -~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~ 231 (535)
.+.+..++|...++.... -|..+-..-...+-+.|++++|+++|+.+.+.+. ..+..-+.+-+ ..+..-.+
T Consensus 89 ~Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~a~~a~l~~- 161 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLLAVAAALQV- 161 (652)
T ss_pred HHHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHhhhH-
Confidence 467899999999996554 3444555555667789999999999999977642 22222221111 00000011
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH---HHhcCCCHhHHHHHHHHhHh-------CCCCC-CCHHH-----HHHHHHHHHhc
Q 009424 232 SMVSEMKEKGIRLDVYSYNIWLS---SCGSQGSTEKMEGVFELMKV-------DKAVN-PNWTT-----FSTMATMYIKM 295 (535)
Q Consensus 232 ~~~~~m~~~g~~pd~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~-------~~~~~-~~~~~-----~~~li~~~~~~ 295 (535)
+.+......| ..+|..+.+ .+...|++.+|+++++...+ +.... -+... ---|.-.+-..
T Consensus 162 ---~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 162 ---QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred ---HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 0122222222 223322222 34456666666666665511 00000 00000 11122334456
Q ss_pred CCHHHHHHHHHHHHhcccCCCcchH----HHHHHHH--------------------------------------------
Q 009424 296 GQVEKAEESLRRVESRITGRDRVPY----HYLLSLY-------------------------------------------- 327 (535)
Q Consensus 296 g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~-------------------------------------------- 327 (535)
|+-++|..++....+... +|.... |.++..-
T Consensus 238 Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655432 222111 1111000
Q ss_pred -HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC--CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 328 -GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG--DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 328 -~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
...+..+.+.++-. ..-...+...+..++..+.+.. ....+.+++...-+....-...+.-..+......|+++
T Consensus 317 ~l~tnk~~q~r~~~a---~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSA---SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHH---hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 00011111111111 1112222345556665554332 35666777776655544434567777888889999999
Q ss_pred HHHHHHH--------HHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH----HHHHHHHHHH
Q 009424 405 KAEAFFN--------SIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV----NVINFFKACE 472 (535)
Q Consensus 405 ~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~----~~~~ll~a~~ 472 (535)
.|.+++. .+.+.+..|-.+. .+...+.+.++.+.|..++.++..+-. .-.+... ++.-+...-.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~--~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWR--KQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHH--HhcccchHHHhHHHHHhHHHH
Confidence 9999999 6666555555544 455666666666666666666652210 0111222 3333333445
Q ss_pred hcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 473 EESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
+.|.-++|..+++++.+..+........||.+|+.-
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 679999999999999999888888999999999653
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-05 Score=71.75 Aligned_cols=350 Identities=12% Similarity=0.017 Sum_probs=193.3
Q ss_pred HhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcC-CHhHHH--------------HHHHHHHHCC-
Q 009424 143 ASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR-MRGNAE--------------LLIDKMRDKG- 206 (535)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~--------------~~~~~m~~~g- 206 (535)
.......+.+|...++-..|.....+.+...+. .--|.|+.-.-+.| +-.++. +...-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~-p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS-PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccc-hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 344556677888889999999998888864222 22233333222222 211111 1111111111
Q ss_pred --------------CCcCcchHHHHHHHHHh--cCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCHhHHHHHH
Q 009424 207 --------------YAVHSLPYNVMMTLYMK--IKEYDEVESMVSEMKEK-GIRLDVYSYNIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 207 --------------~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~-g~~pd~~~~~~ll~~~~~~g~~~~a~~~~ 269 (535)
++|+..+....+.++++ .++...+...+-.+... -++-|+.....+.+++...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 22333333334444433 34444444444333332 24556677777777777788888887777
Q ss_pred HHhHhCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 009424 270 ELMKVDKAVNPNWTTF-STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP 348 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 348 (535)
++..- +.|+..+- ....-.+.+.|+.++...+...+... ..-....|-.-.......++++.|+.+-++..+..+
T Consensus 256 e~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~ 331 (564)
T KOG1174|consen 256 SSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP 331 (564)
T ss_pred HHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc
Confidence 77662 23332221 11112245667777766666665431 112233344444444556677777777776655332
Q ss_pred CCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 349 GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 349 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
. +...|..-..++...|+.++|.-.|+......+. +..+|..|+..|...|++.+|.-+-+..... +.-+..+.+.+
T Consensus 332 r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~ 408 (564)
T KOG1174|consen 332 R-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF 408 (564)
T ss_pred c-cchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh
Confidence 2 1133434445667778888888888877654433 6778888888888888888877666554432 11244454444
Q ss_pred H-HHHH-ccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 429 A-EGHI-RERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 429 i-~~~~-~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
. ..+. .-..-++|.+++++.. .+.|+.. ..+.+...|...|..+.+..+++.....-+ ++...+.|.+.+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L------~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSL------KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIM 481 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhh------ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 2 2222 2223467777777777 5677654 344455678888888888888888775432 222556666666
Q ss_pred Hh
Q 009424 506 DE 507 (535)
Q Consensus 506 ~~ 507 (535)
..
T Consensus 482 ~A 483 (564)
T KOG1174|consen 482 RA 483 (564)
T ss_pred HH
Confidence 43
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.2e-05 Score=72.52 Aligned_cols=205 Identities=11% Similarity=0.079 Sum_probs=139.5
Q ss_pred HHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcccCCCcc-hHHHHHHH
Q 009424 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM-----YIKMGQVEKAEESLRRVESRITGRDRV-PYHYLLSL 326 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~ 326 (535)
+--|.+.+++.+|..+...+.. ..|-......++.+ ......+.-|.+.|+-.-.++.+-|.+ --.++.++
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 3346677788888777766642 23333333333321 122234566777777766666666554 45567777
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHcCChhH
Q 009424 327 YGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA-NLMMSWYVKEGNFDK 405 (535)
Q Consensus 327 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~ 405 (535)
+.-..++++++-.++.++.-...-|.+-+ .+..+.+..|...+|+++|-.+....++ |..+| ..|..+|.+++.++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 77778899999999999887666665554 5778999999999999999887554445 55666 457789999999999
Q ss_pred HHHHHHHHHHcCCCCCHhH-HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH
Q 009424 406 AEAFFNSIIEEGGKPNSTS-WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC 471 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~ 471 (535)
|+.++-.+... .+..+ ...+..-|.+.+++--|-+.|+.+. ...|++..|..--.||
T Consensus 447 AW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE------~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 447 AWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELE------ILDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------ccCCCccccCCccchH
Confidence 99987665431 12223 2334467888999999999999888 5678888776433333
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.96 E-value=9.2e-07 Score=82.75 Aligned_cols=216 Identities=11% Similarity=0.001 Sum_probs=106.8
Q ss_pred CHhHHHHHHHHHHHCC-CCcC--cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 191 MRGNAELLIDKMRDKG-YAVH--SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|+++.|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555421 1111 2335555556666666666666666666653 2345566666666666666666666
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 009424 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF 347 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 347 (535)
.|+...+.. +.+..+|..+...+...|++++|.+.|+...+. .|+..........+...++.++|+..|.+.....
T Consensus 120 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 666666421 233455666666666666666666666666543 2332211111222334455666666665433221
Q ss_pred CCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhc---CCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 348 PGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV---KSS--Y-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 348 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
.++. |. ........|+...+ +.+..+.+. .+. | ....|..+...+.+.|++++|...|++..+.
T Consensus 196 -~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 -DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1111 11 11122233444333 233333211 000 0 1235556666666666666666666666654
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=4.7e-06 Score=80.86 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=22.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 220 LYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 220 ~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
.+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 3344444444444444444432 1223333444444444444444444444443
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=1.5e-05 Score=79.08 Aligned_cols=135 Identities=12% Similarity=-0.000 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.|......+.+.+..++|...+.+..+.. ......|......+-..|+.++|.+.|......++. ++.+.+++...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 45667788888999999987777775543 236777888888888999999999999988875444 5778899999999
Q ss_pred ccccHHHHHH--HHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 434 RERRILEALS--CLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 434 ~~g~~~~A~~--~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+.|+..-|.. ++.++. .+.| ++..|-.+-..+.+.|+.+.|-+.|....+.....+.
T Consensus 730 e~G~~~la~~~~~L~dal------r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDAL------RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HhCCcchHHHHHHHHHHH------hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9998888887 999999 3455 6778999999999999999999999999887666554
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.4e-05 Score=71.13 Aligned_cols=303 Identities=10% Similarity=0.047 Sum_probs=186.0
Q ss_pred HHHHHH--cCCHhHHHHHHHHHHHC-CCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhc
Q 009424 183 LNAYVR--ARMRGNAELLIDKMRDK-GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS-YNIWLSSCGS 258 (535)
Q Consensus 183 i~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~-~~~ll~~~~~ 258 (535)
|.++++ .++...|...+--+... -++-|+.....+.+.+...|+.++|+..|+..+..+ |+..+ .....-.+..
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQ 278 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHh
Confidence 444443 34444444444433322 245567777888888888888888888888776653 33221 1111222356
Q ss_pred CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHH
Q 009424 259 QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYR 338 (535)
Q Consensus 259 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 338 (535)
.|+.+....+...+... ...+...|-.-........+++.|+.+-++..+... .+...+-.--..+.+.|++++|.-
T Consensus 279 eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred ccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHH
Confidence 67777766666665531 122333344334444556777888877777654321 223333333456677888888888
Q ss_pred HHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH-HHHHH-cCChhHHHHHHHHHHHc
Q 009424 339 VWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM-SWYVK-EGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~ 416 (535)
.|+..+...|. +-..|..++.+|...|.+.+|..+-+...+.- .-+..+...+. ..+.- -.--++|.+++++-..
T Consensus 356 aFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~- 432 (564)
T KOG1174|consen 356 AFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK- 432 (564)
T ss_pred HHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-
Confidence 88887774322 33678888888888888888877666554321 12334433331 22222 1224567777776654
Q ss_pred CCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 417 GGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 417 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
+.|+ ...-+.+...+...|..++++.++++.. ...||....+.+-..+.....+.++...|....+.+|.+.
T Consensus 433 -~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L------~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 433 -INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL------IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred -cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH------hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 3444 3345556677778888888888888887 5678888888888888888888888888888888887776
Q ss_pred hhHHH
Q 009424 496 KDYMS 500 (535)
Q Consensus 496 ~~~~~ 500 (535)
.+..-
T Consensus 506 ~sl~G 510 (564)
T KOG1174|consen 506 RTLRG 510 (564)
T ss_pred HHHHH
Confidence 65443
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=8.1e-06 Score=83.01 Aligned_cols=274 Identities=13% Similarity=0.167 Sum_probs=136.7
Q ss_pred HHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 009424 127 EVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKM 202 (535)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 202 (535)
++.+++++.+.+-..++...+..+.++...+-..+-.++++++.-. .-+...-|.||-...+. +.....+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 4555555555334445555555566666666666666666655321 11222333333333332 233444444444
Q ss_pred HHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH
Q 009424 203 RDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW 282 (535)
Q Consensus 203 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 282 (535)
..-+ .| .+...+..++-+++|..+|+..- .+....+.||. .-+.++.|.++-+... ..
T Consensus 1047 dnyD-a~------~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p 1104 (1666)
T KOG0985|consen 1047 DNYD-AP------DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EP 1104 (1666)
T ss_pred ccCC-ch------hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------Ch
Confidence 3332 11 12334445555666666665431 23344444443 2344555555444433 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 009424 283 TTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSL 362 (535)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 362 (535)
.+|+.+..+-.+.|.+.+|.+-|-+. -|+..|.-+++...+.|.+++-...+...++..-.|... +.+|-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 35666666666666666666555432 345556666666666666666666665555544444332 2566666
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHH
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
++.+++.+-++++. .||......+.+-|...|.++.|.-+|. ++.-|..+...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHH
Confidence 66666555444432 2444445555555555555555555443 3334455555555555555555
Q ss_pred HHHHH
Q 009424 443 SCLKG 447 (535)
Q Consensus 443 ~~~~~ 447 (535)
..-++
T Consensus 1241 D~aRK 1245 (1666)
T KOG0985|consen 1241 DAARK 1245 (1666)
T ss_pred HHhhh
Confidence 44443
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.92 E-value=3.8e-05 Score=74.85 Aligned_cols=400 Identities=13% Similarity=0.055 Sum_probs=220.0
Q ss_pred hHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHH
Q 009424 73 WNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL 152 (535)
Q Consensus 73 ~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~ 152 (535)
|-.++..|- .+++. ..+.+.+..+.. ..-...|....--.+...|+-++|.......++.. .-+...+-.+.-.
T Consensus 11 F~~~lk~yE-~kQYk-kgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALKCYE-TKQYK-KGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHH-HHHHH-hHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHHHHHH
Confidence 344444442 34555 566666666652 22233444333334456677777777766666543 2223333333344
Q ss_pred HHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 153 IAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
+....++++|.+.|...... +.|...|.-+--.-++.|+++.......+..+.. +-....|.....++.-.|++..|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55556788888888776655 3455667666666677777777777766665542 234567888888888888889998
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHH------HHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 232 SMVSEMKEKG-IRLDVYSYNIWLS------SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 232 ~~~~~m~~~g-~~pd~~~~~~ll~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
.+.++..+.. -.|+...+.-... ...+.|.++.|.+.+..-... +......--.-.+.+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 8888887754 2455555543322 245677777777777665532 222233334556678888899999999
Q ss_pred HHHHHhcccCCCcchHHHHH-HHHHhcCCHHHHH-HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 009424 305 LRRVESRITGRDRVPYHYLL-SLYGSVGKKEEVY-RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVK 382 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 382 (535)
+..+... .||..-|.... .++.+..+.-+++ .+|....+..+........ =++..-...-.+....++..+.+.|
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl-plsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL-PLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc-cHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9888764 46666665554 3443343434444 6666665533322111000 0011111122233334445555555
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----cC----------CCCCHhHHH--HHHHHHHccccHHHHHHHHH
Q 009424 383 SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE----EG----------GKPNSTSWE--TLAEGHIRERRILEALSCLK 446 (535)
Q Consensus 383 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~ 446 (535)
+. .++..+...|-.-...+--.++.-.+.. .| -.|....|+ .++..|-+.|+++.|.++++
T Consensus 319 ~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 43 2333333333322222211122111111 10 034444443 34566667777888888887
Q ss_pred HhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 447 GAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 447 ~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.+. +-.|+.+ .|..=.+.+.+.|++++|..++++..+.+..
T Consensus 396 ~AI------dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 396 LAI------DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HHh------ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 777 4556543 3333346677777888887777777766543
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=5.9e-05 Score=73.62 Aligned_cols=390 Identities=11% Similarity=0.032 Sum_probs=239.6
Q ss_pred cCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhH
Q 009424 83 MDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASA 162 (535)
Q Consensus 83 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A 162 (535)
.|+.+ +|....+.-.+. -.-+.+.|..+.-.+...+++++|++.|..+.+.+ +.+...+.-+--.=+..|+++..
T Consensus 54 lg~~~-ea~~~vr~glr~-d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~---~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 54 LGKKE-EAYELVRLGLRN-DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE---KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred ccchH-HHHHHHHHHhcc-CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhhhH
Confidence 36666 777766655442 22255667666666667788999999999998876 44555555554455666777666
Q ss_pred HHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCcCcchHHHHH------HHHHhcCChhHHHHHH
Q 009424 163 EDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG-YAVHSLPYNVMM------TLYMKIKEYDEVESMV 234 (535)
Q Consensus 163 ~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~a~~~~ 234 (535)
...-....+. +.....|..+..++.-.|+...|..+.++..+.. -.|+...+.-.. ....+.|..++|++.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6555555443 2456789999999999999999999999988764 245665554433 3445678888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHhcc
Q 009424 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS-TMATMYIKMGQVEKAE-ESLRRVESRI 312 (535)
Q Consensus 235 ~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g 312 (535)
..-... +.-....--.-...+.+.+++++|..++..+..+ .||..-|. .+..++.+--+.-++. .+|....+.-
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 655443 2212222334455678899999999999999965 56666555 4445554444444444 6676665432
Q ss_pred cCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH----hcC------
Q 009424 313 TGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL----SVK------ 382 (535)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~------ 382 (535)
.. ....-..=++........+..-.++..+.+.|+.+ ++..+.+.|-.-...+-.+++.-.+. ..|
T Consensus 285 ~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 285 PR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred cc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 11 11111111111111112333334444444444432 34455555443332222222222211 111
Q ss_pred ----CCCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC
Q 009424 383 ----SSYDPRIA--NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAK 455 (535)
Q Consensus 383 ----~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 455 (535)
-.|....| -.++..|-+.|+++.|...++...+. .|+ +.-|-.=.+.+..+|+.++|..++++.. +.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~----el 434 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ----EL 434 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH----hc
Confidence 13454444 45778888999999999999998874 444 2334444578889999999999999999 33
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 009424 456 SWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 456 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
. .||...-.--..-..+....++|.++.....+.|.
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 2 34444433445556677889999999999988875
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=2.5e-06 Score=72.49 Aligned_cols=192 Identities=14% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC
Q 009424 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK 332 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (535)
.-.|...|+...|..-+++..+.. +.+..+|..+...|-+.|..+.|.+.|+......+ .+..+.|..-.-+|..|+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence 334445555555555555544321 22333444455555555555555555554433211 122233333444444445
Q ss_pred HHHHHHHHHHHHhhCCCC-chhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 333 KEEVYRVWNLYRSVFPGV-TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
+++|...|++....-.-+ ...+|..+.-+..+.|+.+.|...+++.++.... .+...-.+.....+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 555554444444321111 1134444444444455555555555544443332 22333344444444455555554444
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 412 SIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 412 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.....+. ++..+...-|..-.+.|+.+.+-++=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444333 344444444444444444444444433333
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.5e-05 Score=81.19 Aligned_cols=347 Identities=11% Similarity=0.051 Sum_probs=174.1
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 91 ASVLNDWEKGGRS--LTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 91 ~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
..+.++..+-++. -|+...+..++++...+-..+-+++++.++-....+.-+....|.++-.-.+..+ ....+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHH
Confidence 3455555555433 4777777899999999999999999999987765566566666666554444332 233344444
Q ss_pred CCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC---------------------CcCcchHHHHHHHHHhcCC
Q 009424 169 LPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGY---------------------AVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 169 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------~p~~~~~~~li~~~~~~g~ 226 (535)
+..- .|+ +......++-+++|..+|++....+- --....|..+..+-.+.|.
T Consensus 1046 LdnyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1046 LDNYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred hccCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 4332 122 12223344555666666655422100 0012345555555555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLR 306 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 306 (535)
..+|++-|- +. -|...|..+++.+.+.|.+++-.+++...+++ .-.| .+-+.||-+|++.+++.+-.+++
T Consensus 1120 v~dAieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~--~id~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREP--YIDSELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred hHHHHHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCc--cchHHHHHHHHHhchHHHHHHHh-
Confidence 555554442 11 14445555555555555555555555444432 1122 23344555555555554443333
Q ss_pred HHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 307 RVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
..||......+-+-|...|.++.|.-+|..+. -|..+...+...|+++.|..--+++ .+
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 13455555555555555555555555444331 2444455555555555554443322 14
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVI 465 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~ 465 (535)
..+|--+-.+|...+.+.-|. |-..++.....-..-++.-|-..|.+++-+.+++... |++--+ ..|+
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L------GLERAHMgmfT 1317 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL------GLERAHMGMFT 1317 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh------chhHHHHHHHH
Confidence 445555555555444433322 2222223344445566666777777777777776666 444322 2344
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 009424 466 NFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
-+.-.|++- +.++..+.++..
T Consensus 1318 ELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HHHHHHHhc-CHHHHHHHHHHH
Confidence 443344332 344444444433
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=2.7e-06 Score=72.28 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSL 362 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 362 (535)
+...|.-.|...|+...|..-+++..+. .| +..+|..+...|.+.|+.+.|.+-|++.....+. +..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 4556777899999999999999999875 34 4558999999999999999999999999885444 235677888888
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHH
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSY-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 441 (535)
|..|.+++|.+.|++......-+ -..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 99999999999999988654322 3467888888888999999999999999987554 566777888889999999999
Q ss_pred HHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 442 LSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 442 ~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
..+++... ..+ .++..++...|+.-...||.+.+.++=.++.+.-|..
T Consensus 193 r~~~~~~~----~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 193 RLYLERYQ----QRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHH----hcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999988 444 4889999889999999999999988887777655443
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.85 E-value=0.00012 Score=70.06 Aligned_cols=423 Identities=9% Similarity=0.075 Sum_probs=257.3
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDA 146 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 146 (535)
-|+-+|+.||+-+-.. ..+ ++.+++++|.. +.| .+..|..-++.-.+.++++....+|.+.+..- +. ...+
T Consensus 18 ~di~sw~~lire~qt~-~~~-~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln--lDLW 89 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PID-KVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN--LDLW 89 (656)
T ss_pred ccHHHHHHHHHHHccC-CHH-HHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh--HhHH
Confidence 4788999999988666 777 99999999986 455 56677788999999999999999999888765 33 4444
Q ss_pred HHHHHHHHhh-CCHhhHHH----HHhh----CCCCCCCHHHHHHHHHH---------HHHcCCHhHHHHHHHHHHHCCCC
Q 009424 147 AIQLDLIAKV-HGVASAED----FFLS----LPDTLKDRRVYGALLNA---------YVRARMRGNAELLIDKMRDKGYA 208 (535)
Q Consensus 147 ~~li~~~~~~-g~~~~A~~----~f~~----~~~~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~ 208 (535)
..-++.-.+. |+...++. .|+- +--...+-..|+..+.. |..+.+.+..+++++++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 4444433322 33322221 2221 11101334456666553 45566778888888888764221
Q ss_pred c------CcchHHHHHHHHH-------hcCChhHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHhc
Q 009424 209 V------HSLPYNVMMTLYM-------KIKEYDEVESMVSEMKE--KGIRLDVYS---------------YNIWLSSCGS 258 (535)
Q Consensus 209 p------~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~g~~pd~~~---------------~~~ll~~~~~ 258 (535)
- |-..|..=|+... +...+..|.+++++... +|+..+..+ |-.+|.-= +
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-k 248 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-K 248 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-h
Confidence 1 1112222222111 22346677777777654 343322222 33333211 1
Q ss_pred CCCHh---------HHHHHHHHhHhCCCCCCCHHHH-H----HHHHHHHhcCC-------HHHHHHHHHHHHhcccCCCc
Q 009424 259 QGSTE---------KMEGVFELMKVDKAVNPNWTTF-S----TMATMYIKMGQ-------VEKAEESLRRVESRITGRDR 317 (535)
Q Consensus 259 ~g~~~---------~a~~~~~~~~~~~~~~~~~~~~-~----~li~~~~~~g~-------~~~A~~~~~~m~~~g~~~~~ 317 (535)
.+-+. ...-++++...-.+..|++... . ..-+.+...|+ -+++..+++.....-...+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1112223322222333332211 1 11122333444 35566666665443223333
Q ss_pred chHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-CHHHHHHH
Q 009424 318 VPYHYLLSLYGSV---GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY-DPRIANLM 393 (535)
Q Consensus 318 ~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 393 (535)
.+|..+.+---.. ...+.....+++.......-...+|...++.--+..-++.|+.+|.++.+.+..+ ++.+++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 3444333221111 1256666777777664333344789999999999999999999999999988776 88899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH--HHHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP--VNVINFFKAC 471 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~--~~~~~ll~a~ 471 (535)
+.-|| .++.+-|.++|+--..+- .-+..--...+.-+..-++-..|..+|++.. ..++.||. ..|..+|.-=
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l----~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVL----TSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHH----hccCChhhhHHHHHHHHHHH
Confidence 99887 578899999998755431 1133444567788888899999999999999 66677665 5899999999
Q ss_pred HhcCChhhHHHHHHHHhcCCC---CChh-hHHHHHHHh
Q 009424 472 EEESDMGSKEAFVALLRQPGY---RKEK-DYMSLIGLT 505 (535)
Q Consensus 472 ~~~g~~~~a~~~~~~~~~~~~---~~~~-~~~~L~~~y 505 (535)
+.-|+...+.++-+++...-+ .+.. .-..+++.|
T Consensus 483 S~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 999999999999888765533 3333 556667777
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=2.8e-06 Score=83.42 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=65.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 296 (535)
.+.+......+.+|+.+++.++.... -..-|..+.+-|+..|+++.|.++|.+.. .++--|.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence 34455556667777777776665532 22335566667777777777777775443 2444567777777
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVW 340 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (535)
++++|.++-++. .|.+.....|.+-..-+-++|++.+|.++|
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777777766554 334444445555455555556555555554
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=4.9e-05 Score=83.67 Aligned_cols=340 Identities=8% Similarity=-0.015 Sum_probs=213.0
Q ss_pred HHHhhCCHhhHHHHHhhCCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC--C----CcCc--chHHHHHHHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDT--LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG--Y----AVHS--LPYNVMMTLY 221 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~--~~~~~li~~~ 221 (535)
.....|+++.+..+++.++.. ..+..........+...|++++|..++.+....- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567888888888877532 1222223344455567899999999998775421 0 1111 1112223445
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCC--CC--CHHHHHHHHHHHH
Q 009424 222 MKIKEYDEVESMVSEMKEKGIRLDV----YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAV--NP--NWTTFSTMATMYI 293 (535)
Q Consensus 222 ~~~g~~~~a~~~~~~m~~~g~~pd~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~li~~~~ 293 (535)
...|++++|...+++..+.-...+. ...+.+...+...|+++.|...+.+......- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988764211222 23455566677899999999999887632110 11 1234556667788
Q ss_pred hcCCHHHHHHHHHHHHhc----ccCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCc--hhhHHHHHHHH
Q 009424 294 KMGQVEKAEESLRRVESR----ITGR---DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP--GVT--NLGYHAMISSL 362 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~----g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~--~~~~~~ll~~~ 362 (535)
..|++++|...+++..+. +... ....+..+...+...|++++|...+.+...... .+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998886542 2111 122344455667778999999999988755311 111 23444566677
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCC-CHHHH-----HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHH
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSY-DPRIA-----NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN---STSWETLAEGHI 433 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 433 (535)
...|+.+.|.+.+.......... ....+ ...+..+...|+.+.|.+.+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875431111 11111 1122445568999999999876554211111 111345667788
Q ss_pred ccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 434 RERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
..|++++|...++++.......|..++. .+...+-.++...|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999988433234444332 345556668889999999999999887654
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=2.5e-07 Score=85.33 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCCh-hhH
Q 009424 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDM-GSK 480 (535)
Q Consensus 402 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~-~~a 480 (535)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.++. ... .-|..++..++..+...|+. +.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al----~~~-~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL----EKD-PNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC----CC--CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH----Hhc-cCCHHHHHHHHHHHHHhCCChhHH
Confidence 355555555554432 23344445555555555555555555555544 111 11233444444444454544 344
Q ss_pred HHHHHHHhcCCC
Q 009424 481 EAFVALLRQPGY 492 (535)
Q Consensus 481 ~~~~~~~~~~~~ 492 (535)
.+++.++....+
T Consensus 256 ~~~l~qL~~~~p 267 (290)
T PF04733_consen 256 ERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHCHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 455555554433
No 92
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=6.1e-09 Score=61.13 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCCcCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 009424 206 GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237 (535)
Q Consensus 206 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 237 (535)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=6.9e-06 Score=86.35 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=121.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEK-GIR---LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTF 285 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~---pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 285 (535)
....|-..|....+.++.++|.+++++.+.. +++ --...|.++++.-..-|.-+...++|+++.+- ..-..+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3455666666666677777777776666543 111 01234555555555556666666666666642 2223456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHh
Q 009424 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLAR 364 (535)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~ 364 (535)
..|...|.+.+..++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++.+....-+.... ....-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 66666777777777777777776543 2234556666666666666666676666666654444222 223334444456
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP 420 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 420 (535)
.|+.+.++.+|+..+...++ -...|+..|++-.++|+.+.++.+|++..+.++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666666554443 45566666666666666666666666666655543
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=5.9e-06 Score=81.22 Aligned_cols=268 Identities=17% Similarity=0.169 Sum_probs=163.0
Q ss_pred HHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---------C-----------
Q 009424 147 AIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDK---------G----------- 206 (535)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g----------- 206 (535)
.+.|..|.+.|....|.+....-.....|......+..++.+..-++.|-++|+++... |
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 45678888888887776655332222245555555555555555555555555554321 0
Q ss_pred --CCcCcchH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHH
Q 009424 207 --YAVHSLPY-NVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWT 283 (535)
Q Consensus 207 --~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 283 (535)
++..+++. ......+...|+++.|+.-|-+.. ...-.+.+.....+|.+|+.+++.+..+ +.-.-
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq---k~~s~ 766 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ---KTASG 766 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh---ccccc
Confidence 11111111 111122233344444443332211 1122345566778899999999988743 23334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
-|..+.+.|+..|+++.|.++|-+. ..++-.|.+|.+.|+|+.|.++-.+.. ++......|.+-..-+-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLD 835 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence 5777889999999999999999753 236677899999999999998876653 35545566766677778
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
+.|++.+|.+++-.+ | .|+ .-|.+|-+.|..++.+++.++-... --..|...+..-|-..|+...|.+
T Consensus 836 ehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHH
Confidence 889999998887543 2 233 3578888888888888877654321 112344455555666677776666
Q ss_pred HHHHhH
Q 009424 444 CLKGAF 449 (535)
Q Consensus 444 ~~~~m~ 449 (535)
-|-++.
T Consensus 904 ~flea~ 909 (1636)
T KOG3616|consen 904 HFLEAG 909 (1636)
T ss_pred HHHhhh
Confidence 665554
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=8.5e-06 Score=85.70 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=184.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 234 VSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP---NWTTFSTMATMYIKMGQVEKAEESLRRVES 310 (535)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (535)
|++..... +-....|-..|.-....+++++|+++.++..+.-++.- -...|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 33456788888888899999999999999886422211 134788888888888888899999999876
Q ss_pred cccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-CHHH
Q 009424 311 RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY-DPRI 389 (535)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~ 389 (535)
. --....|..|...|.+.+..++|.++|+.|.+... -....|...+..+.+..+-+.|..++.++++.-++- ....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 3 22244688889999999999999999999988644 334678899999999999999999999887654331 3445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH--HHHHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP--VNVINF 467 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~--~~~~~l 467 (535)
..-.+..-.++|+.+.++.+|+......++ ....|+.+|+.=.++|+.+.+..+|+++. ..++.|-. ..|.-.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi----~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVI----ELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHH----hcCCChhHhHHHHHHH
Confidence 566777788899999999999998876555 67889999999999999999999999999 77777754 355566
Q ss_pred HHHHHhcCChhhHHHHHHHH
Q 009424 468 FKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~ 487 (535)
+..=...|+-+.++.+-.+.
T Consensus 1678 LeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHhcCchhhHHHHHHHH
Confidence 66556667765555444433
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=7.1e-05 Score=66.10 Aligned_cols=324 Identities=12% Similarity=0.090 Sum_probs=203.5
Q ss_pred hHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHH
Q 009424 73 WNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLD 151 (535)
Q Consensus 73 ~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~ 151 (535)
+++.|--+.+..++. +|++++..-.++ .| +...++.+..+|-...++..|-..++++-... ......-+ --..
T Consensus 13 ftaviy~lI~d~ry~-DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl-Y~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYA-DAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL-YQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHH-HHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH-HHHH
Confidence 566777777788888 888888776653 34 55566677777778888999999888887654 11111111 1123
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHH--HHH--HHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCCh
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDRRVYGALL--NAY--VRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li--~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 227 (535)
.+.+.+.+.+|.++...|.+. ....+..+ .+- -..+++..++.+.++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 445677888888888888762 22222222 111 23577888888888877554 555555555566788889
Q ss_pred hHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC-------------CCHH--------HH
Q 009424 228 DEVESMVSEMKEK-GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN-------------PNWT--------TF 285 (535)
Q Consensus 228 ~~a~~~~~~m~~~-g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~~--------~~ 285 (535)
++|++-|+...+- |.. ....|+..+ +..+.|+.+.|.+...+++++ |++ ||+. .-
T Consensus 161 EaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999888887775 444 445676655 445668888888888887753 221 1211 12
Q ss_pred HHHHH-------HHHhcCCHHHHHHHHHHHHhc-ccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHH
Q 009424 286 STMAT-------MYIKMGQVEKAEESLRRVESR-ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHA 357 (535)
Q Consensus 286 ~~li~-------~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 357 (535)
++++. .+.+.|+.+.|.+.+-.|.-+ ....|++|...+.-. -..+++.+..+-+.-+....|-| ..||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP-~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP-PETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC-hHHHHH
Confidence 33443 356789999999998888322 233577777655322 12344555555555555655644 479999
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHH-cCChhHHHHHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSS-YDPRIANLMMSWYVK-EGNFDKAEAFFNSII 414 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 414 (535)
++-.||++.-++.|-.++.+-...... .+...|+ |++++.- .-..++|++-++.+.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999888753222111 2344444 3444443 445677766665544
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=1.6e-08 Score=59.38 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=16.3
Q ss_pred CCCCCHhHHHHHHHHHHccccHHHHHHHHHHh
Q 009424 417 GGKPNSTSWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 417 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
|+.||..||++||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 98
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.72 E-value=0.00011 Score=70.19 Aligned_cols=354 Identities=8% Similarity=0.065 Sum_probs=210.5
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHH
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM 218 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 218 (535)
+.|...++.||.-+... .++++++.++++... +-....|..-|.+-.+.++++...++|.+....- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 67888999999887776 999999999999887 3456789999999999999999999999887653 3577788887
Q ss_pred HHHHhc-CChhH----HHHHHHHH-HHcCCCCCH-HHHHHHHHH---------HhcCCCHhHHHHHHHHhHhCCCCCCCH
Q 009424 219 TLYMKI-KEYDE----VESMVSEM-KEKGIRLDV-YSYNIWLSS---------CGSQGSTEKMEGVFELMKVDKAVNPNW 282 (535)
Q Consensus 219 ~~~~~~-g~~~~----a~~~~~~m-~~~g~~pd~-~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 282 (535)
+.--+. |+... ..+.|+-. .+.|+.+-. ..|+..+.- +....+++..+++++++... .+..=.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~nlE 172 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHNLE 172 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-ccccHH
Confidence 755443 33322 23334433 344544322 234444433 22334567788888888742 111111
Q ss_pred HHHHH------HHHH-------HHhcCCHHHHHHHHHHHHh--cccCCCcch---------------HHHHHHHHHhc--
Q 009424 283 TTFST------MATM-------YIKMGQVEKAEESLRRVES--RITGRDRVP---------------YHYLLSLYGSV-- 330 (535)
Q Consensus 283 ~~~~~------li~~-------~~~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~li~~~~~~-- 330 (535)
..|+- =|+. --+...+..|+++++++.. +|...+..+ |-.+|.---.+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 12321 1111 1123345667777777643 333333222 33333211111
Q ss_pred -----------------------------------------------CC-------HHHHHHHHHHHHhhCCCCchhhHH
Q 009424 331 -----------------------------------------------GK-------KEEVYRVWNLYRSVFPGVTNLGYH 356 (535)
Q Consensus 331 -----------------------------------------------g~-------~~~a~~~~~~m~~~~~~~~~~~~~ 356 (535)
|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122222222222211111111222
Q ss_pred HHHHHHHhcC---CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHH
Q 009424 357 AMISSLARIG---DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP-NSTSWETLAEGH 432 (535)
Q Consensus 357 ~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~ 432 (535)
.+.+---..- ..+....+++++...-..--..+|..+++.-.+..-+..|+.+|.+..+.+..+ ++..+++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 1111111111 133344444444433222123467778888888889999999999999987777 778888888877
Q ss_pred HccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh---hHHHHHHH
Q 009424 433 IRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVALLRQPGYRKEK---DYMSLIGL 504 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~L~~~ 504 (535)
|. ++.+-|.++|+--.. --+|.. --...+.-+.+.++-..++.+|++.+..+..++. .|..+++.
T Consensus 413 cs-kD~~~AfrIFeLGLk------kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLK------KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred hc-CChhHHHHHHHHHHH------hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 65 677999999998772 223443 4456677888999999999999999988666544 56666654
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=4.4e-07 Score=83.70 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHH
Q 009424 333 KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF-DKAEAFFN 411 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 411 (535)
+.+|..+|+++... ..++..+.+.+..+....|++++|.+++.+....... ++.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 1223334444444444455555555554444433322 333444444444444444 33444444
Q ss_pred HHHH
Q 009424 412 SIIE 415 (535)
Q Consensus 412 ~m~~ 415 (535)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=0.00015 Score=69.31 Aligned_cols=102 Identities=8% Similarity=-0.067 Sum_probs=65.5
Q ss_pred HhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 80 LSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 80 ~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
....|+++ .|+.+|.+..... ++|...|+-=..++++.|++.+|++=-..-++.. +.-+.-|+....+..-.|++
T Consensus 12 a~s~~d~~-~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 12 AFSSGDFE-TAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hcccccHH-HHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccH
Confidence 34567777 7777777766532 1255566677777777787777777666665554 33345566666667777788
Q ss_pred hhHHHHHhhCCCCCC-CHHHHHHHHHHH
Q 009424 160 ASAEDFFLSLPDTLK-DRRVYGALLNAY 186 (535)
Q Consensus 160 ~~A~~~f~~~~~~~~-~~~~~~~li~~~ 186 (535)
++|+.-|.+-.+..| |...++-+..++
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 888877777665533 445555555555
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=1.7e-06 Score=82.94 Aligned_cols=264 Identities=14% Similarity=0.136 Sum_probs=186.1
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHH
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (535)
+.+.|++.+|.-.|+..++.. +-+...|--|....+.+++-..|+..+.+..+..+ .|....-.|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 457888999999999888653 55677899898888999998889988888876322 245567777788888888889
Q ss_pred HHHHHHHHHhhCCCC--------chhhHHHHHHHHHhcCCHhhHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHcCChhHH
Q 009424 336 VYRVWNLYRSVFPGV--------TNLGYHAMISSLARIGDIEGMEKIFEEWLS-VKSSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 336 a~~~~~~m~~~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
|+..++......+.- +...-.. ........+....++|-++.. .+..+|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999888876533221 0000000 111222234444555555544 44457899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKEAFVA 485 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~ 485 (535)
.+.|+......+. |...||-|...++...+.++|+..|++++ .++|+.+ ....|--+|...|.+++|.+.|=
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rAL------qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRAL------QLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHH------hcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999986555 78899999999999999999999999999 6788865 55556668999999999998887
Q ss_pred HHhcCCCC---------C-hhhHHHHHHHhHhhhhcccccCCCCCChhHHHHHHhhh
Q 009424 486 LLRQPGYR---------K-EKDYMSLIGLTDEAVAENNKKNDEDSDEDSEMLLSQLQ 532 (535)
Q Consensus 486 ~~~~~~~~---------~-~~~~~~L~~~y~~~~~~~~~~~~i~~~~~~~~l~~~l~ 532 (535)
..+..... + +..|..|-.++...++.+- .....+..++..+...+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~-l~~a~~~~nl~~l~~~f~ 578 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL-LQEAAPSRNLSALKAEFS 578 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH-HHHhccccCHHHHHHHhc
Confidence 66533221 2 2266666655544444432 233444556666665543
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=0.00022 Score=64.31 Aligned_cols=205 Identities=10% Similarity=0.042 Sum_probs=128.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 296 (535)
.+..+...|+...|++....+++.. +-|...+..-..+|...|++..|+.=+....+-. ..+..+.--+-..+...|
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhh
Confidence 3444556778888888888887763 3477777777788888888888877776665421 345555666666777788
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
+.+.++...++..+ +.||.... |..-..+.+....++.|.+ ....+++.++.+-.+
T Consensus 238 d~~~sL~~iRECLK--ldpdHK~C------f~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 238 DAENSLKEIRECLK--LDPDHKLC------FPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGE 293 (504)
T ss_pred hHHHHHHHHHHHHc--cCcchhhH------HHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHH
Confidence 88888877777655 34543321 1111122223333333322 223455666666666
Q ss_pred HHHhcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 377 EWLSVKSSYDPR---IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 377 ~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
...+..+..... .+..+-.+|...|++.+|++.-.+..+.... |+.++.--..+|.-...+++|+.=|+.+.
T Consensus 294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 665555442222 3334556667778888888888877764222 47777777788888888888888888888
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.5e-05 Score=70.28 Aligned_cols=299 Identities=12% Similarity=0.046 Sum_probs=206.0
Q ss_pred CCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHH
Q 009424 101 GRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYG 180 (535)
Q Consensus 101 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 180 (535)
|+....--+.+++..+.+..++..+++++..-.+.. +.+....+.+..+|....++..|-..++++....|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 333333345578888888899999999998877765 44667778888899999999999999999887656555443
Q ss_pred HH-HHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 181 AL-LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTL--YMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 181 ~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
-. ...+-+.+.+.+|+++...|... |+...-..-+.+ ....+++..+..+.++....| +..+.+..-....
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 22 24456778999999999988764 222222222222 235678888888888776544 4455555555567
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-------------Ccc------
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-------------DRV------ 318 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-------------~~~------ 318 (535)
+.|+.+.|.+-|+...+-+|+.|- ..||.-+. ..+.|+.+.|++...++.++|++. |+.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 899999999999999987787664 45665554 456789999999999999887642 211
Q ss_pred ---------hHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH
Q 009424 319 ---------PYHYLLSLYGSVGKKEEVYRVWNLYRSV-FPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR 388 (535)
Q Consensus 319 ---------~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 388 (535)
.+|.-...+.+.|+.+.|.+.+-.|.-. ....|.+|...+.-.= ..+++.++.+-+..+....+. ...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChH
Confidence 1222233456778888888888887431 2233445554433221 235566666767777666654 567
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNS 412 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~ 412 (535)
|+..++-.||+..-++.|-+++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888888899999999998888754
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=0.00026 Score=78.04 Aligned_cols=355 Identities=11% Similarity=-0.004 Sum_probs=212.9
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhH
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDRRV--YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 229 (535)
.+...|++.+|......... .+... ...........|+++.+...++.+.......+..........+...|++++
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d--~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGD--AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34555666666665555543 11111 111222344567888777777765322111123333445556677899999
Q ss_pred HHHHHHHHHHcC--C----CCCHH--HHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH----HHHHHHHHHHHhcCC
Q 009424 230 VESMVSEMKEKG--I----RLDVY--SYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW----TTFSTMATMYIKMGQ 297 (535)
Q Consensus 230 a~~~~~~m~~~g--~----~pd~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 297 (535)
+..++......- . .+... ....+-..+...|+++.|...++....... ..+. ...+.+...+...|+
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCC
Confidence 999998775431 1 11111 122233445679999999999998764211 1121 244566667788999
Q ss_pred HHHHHHHHHHHHhcccC---CC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC--C-chhhHHHHHHHHHhc
Q 009424 298 VEKAEESLRRVESRITG---RD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV----FPG--V-TNLGYHAMISSLARI 365 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~---~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~ 365 (535)
+++|...+++....... +. ..++..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999887643211 11 224455566788899999999998886552 211 1 112344555667778
Q ss_pred CCHhhHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhHHH-----HHHHHHHcc
Q 009424 366 GDIEGMEKIFEEWLSVK--SSY--DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-PNSTSWE-----TLAEGHIRE 435 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~-----~li~~~~~~ 435 (535)
|++++|...+.+..... ..+ ....+..+...+...|+.++|.+.++........ .....+. ..+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 99999999988875431 111 2334455667788899999999999887642111 1111111 122445567
Q ss_pred ccHHHHHHHHHHhHHhccCCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHhcC----CCCChh--hHHHHHHHhH
Q 009424 436 RRILEALSCLKGAFAAEGAKSWRPKP---VNVINFFKACEEESDMGSKEAFVALLRQP----GYRKEK--DYMSLIGLTD 506 (535)
Q Consensus 436 g~~~~A~~~~~~m~~~~~~~g~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~~~--~~~~L~~~y~ 506 (535)
|+.+.|.+++.... ........ ..+..+..++...|+.++|...+++..+. |..... ....+..+|.
T Consensus 667 g~~~~A~~~l~~~~----~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 667 GDKEAAANWLRQAP----KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred CCHHHHHHHHHhcC----CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 89999999988766 22211111 11345566788889999999999988654 333333 4566667777
Q ss_pred hhhhccc
Q 009424 507 EAVAENN 513 (535)
Q Consensus 507 ~~~~~~~ 513 (535)
..|+..+
T Consensus 743 ~~G~~~~ 749 (903)
T PRK04841 743 QQGRKSE 749 (903)
T ss_pred HcCCHHH
Confidence 7776655
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=0.00011 Score=70.28 Aligned_cols=104 Identities=10% Similarity=-0.076 Sum_probs=80.4
Q ss_pred HHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCC-HHHHHHHHHHHHHcCCH
Q 009424 114 KELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKD-RRVYGALLNAYVRARMR 192 (535)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~ 192 (535)
.+....|+++.|+..|-..+... +.+...|+.-..+|++.|++++|.+=-.+-.+..|+ ...|+-.-.+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~---p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS---PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC---CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 45567899999999999999886 448888888999999999999998766665555455 45788888888889999
Q ss_pred hHHHHHHHHHHHCCCCcCcchHHHHHHHH
Q 009424 193 GNAELLIDKMRDKGYAVHSLPYNVMMTLY 221 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 221 (535)
++|+.-|.+-.+.. +-|...++.+..++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 99999999877653 23344444444444
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00068 Score=65.75 Aligned_cols=348 Identities=11% Similarity=0.080 Sum_probs=203.4
Q ss_pred HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHH--HHHH--
Q 009424 111 RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGAL--LNAY-- 186 (535)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~l--i~~~-- 186 (535)
+=+..+...+++++|.+..+.++..+ +-+...+..-+-+....+++++|.++.+.-... .+++.. =.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhHHHHHHH
Confidence 44566678899999999999999876 566777777777889999999999777654431 222322 3444
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHhHH
Q 009424 187 VRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL-DVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~g~~~~a 265 (535)
.+.+..++|+..++-.... |..+...-...+.+.|++++|+.+|+.+.+.+.+- |...-..++.+-.. -.+
T Consensus 90 Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV 161 (652)
T ss_pred HHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH
Confidence 4679999999999832222 33366666778889999999999999998886431 22222222221111 111
Q ss_pred HHHHHHhHhCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-------------CCcc-hHHHHHHHHHh
Q 009424 266 EGVFELMKVDKAVNPN--WTTFSTMATMYIKMGQVEKAEESLRRVESRITG-------------RDRV-PYHYLLSLYGS 329 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------~~~~-~~~~li~~~~~ 329 (535)
. +.+... ..|+ ...+-.....+...|++.+|+++++...+-+.+ -+.. .-.-+.-.+-.
T Consensus 162 ~-~~q~v~----~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVP----EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhcc----CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 222222 2232 222222344577899999999999988332111 0111 11223445677
Q ss_pred cCCHHHHHHHHHHHHhhCCCCch----hhHHHHHHHHHhcCC-Hh-----------------------------------
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTN----LGYHAMISSLARIGD-IE----------------------------------- 369 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~-~~----------------------------------- 369 (535)
.|+.++|..++.......+. |. +.-|.++.. ..-.+ ++
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988775332 22 111111111 11111 00
Q ss_pred ----------hHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcccc
Q 009424 370 ----------GMEKIFEEWLSVKSSYDPRIANLMMSWYVK--EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437 (535)
Q Consensus 370 ----------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 437 (535)
.+.++-... -+..|. ..+..++....+ .....+|..++...-+....-..+.--.++.....+|+
T Consensus 315 lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 011110000 111222 233333333322 22466677777766654333234555666777888999
Q ss_pred HHHHHHHHH--------HhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 438 ILEALSCLK--------GAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 438 ~~~A~~~~~--------~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
++.|++++. ... +.+..| .+...+...+.+.++-+.|..++...++
T Consensus 392 ~~~A~~il~~~~~~~~ss~~----~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSIL----EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhh----hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 999999998 555 334444 4556666777788887777777776653
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=8.3e-06 Score=80.45 Aligned_cols=232 Identities=15% Similarity=0.109 Sum_probs=180.5
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHH
Q 009424 248 SYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327 (535)
Q Consensus 248 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (535)
.-..+...+...|-...|..+|+++. .|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 33456677788899999999998876 577789999999999999999888766 468888898888888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
....-+++|.++++..... .-..+.......++++++.+.++.-.+..+- -..+|-.+-.+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHH
Confidence 7777899999999876442 0011111223478999999999987665533 5678888888999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
+.|.......+. +...||.+-.+|.+.++-.+|...++++. +.. .-+...|...+....+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAl----Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEAL----KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHh----hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998875433 67889999999999999999999999999 666 445678888888889999999999999998
Q ss_pred hcCCCC--ChhhHHHHHHHh
Q 009424 488 RQPGYR--KEKDYMSLIGLT 505 (535)
Q Consensus 488 ~~~~~~--~~~~~~~L~~~y 505 (535)
.+.... .+.+-..++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 765333 222444444444
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=0.00021 Score=71.59 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL 324 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 324 (535)
|...|.-.-.-.-..|++|.|+.+|...+. |-+++...|-.|+.++|-++-++- -|....-.+.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhla 974 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLA 974 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHH
Confidence 334444444445567777777777777652 445666666677777777776653 3555556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC---------------CHhhHHHHHHHHHhcCCCCCHHH
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG---------------DIEGMEKIFEEWLSVKSSYDPRI 389 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~ 389 (535)
+.|-..|++.+|+.+|.+.+. +...|+.|-.++ +.-.|-++|++. |. -
T Consensus 975 R~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~ 1037 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----Y 1037 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----h
Confidence 778888888888888776643 333333332222 122233333321 11 1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH--------HHHcCC--CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh------c-
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNS--------IIEEGG--KPNSTSWETLAEGHIRERRILEALSCLKGAFAA------E- 452 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~--------m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~- 452 (535)
...-+..|-+.|.+.+|+++--+ ++.+++ ..|+...+--.+.++.+.++++|..++-..++. .
T Consensus 1038 ~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1038 AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22345567777777777665321 222222 234555555555566666666666655443311 0
Q ss_pred ---------------cCCCCCCCHH----HHHHHHHHHHhcCChhhHHHHHH
Q 009424 453 ---------------GAKSWRPKPV----NVINFFKACEEESDMGSKEAFVA 485 (535)
Q Consensus 453 ---------------~~~g~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~ 485 (535)
+...-.|+.. .+..+...|.+.|++..|-+=|.
T Consensus 1118 ~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1118 NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 1111233333 45566667888888877765444
No 109
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=5.2e-05 Score=71.05 Aligned_cols=207 Identities=11% Similarity=0.029 Sum_probs=142.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC-
Q 009424 291 MYIKMGQVEKAEESLRRVESRITGRD-RVPYHYLLSLYGSVG-KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD- 367 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~- 367 (535)
.+...++.++|+.+.+++.+. .|+ ..+|+.--..+...| ++++++..++++....++.- .+|+.-...+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny-qaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY-QIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch-HHhHHHHHHHHHcCch
Confidence 344456677777777777653 233 335555445555556 46788888888777655532 345544444445554
Q ss_pred -HhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc---cc----HH
Q 009424 368 -IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE---RR----IL 439 (535)
Q Consensus 368 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~ 439 (535)
.+.+..+.+.+++...+ |..+|+....++.+.|+++++++.++++.+.++. |...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 25678888888877665 7888888888888889999999999999987766 777787776655543 22 35
Q ss_pred HHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhc----CChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 440 EALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEE----SDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
+++++..+++ ...| |...|..+...+... +...+|.+++.+..+.++........|++.|++.
T Consensus 201 ~el~y~~~aI------~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 201 SELKYTIDAI------LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHH------HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 6788887777 3455 456777777777663 4456788899888887776666889999999753
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.00048 Score=62.24 Aligned_cols=312 Identities=10% Similarity=0.030 Sum_probs=182.1
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHH---HHHHHcCCHhHHHHHHHHHHHCCCCcCcchH-HHHHHHHHhc
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALL---NAYVRARMRGNAELLIDKMRDKGYAVHSLPY-NVMMTLYMKI 224 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~ 224 (535)
+...+...|++.+|+.-|....+ -|+..|-++. ..|...|+...|+.=+.+..+. +||-..- -.-...+.+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 34445556777777777777666 4444444443 4566777777777777766654 4553211 1112345677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
|.+++|..-|+..++.. |+..+ ...++.+.--.++-+.+ ...+..+.-.|+...|+..
T Consensus 120 Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l-----------------~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL-----------------VQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred ccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH-----------------HHHHHHHhcCCchhhHHHH
Confidence 77777777777777663 22111 11112111111111111 1222334456666667766
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
...+.+- ...|...+..-..+|...|++..|+.=++...+..... ..++.-+-..+...|+.+.++...++.++.+
T Consensus 178 i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKld-- 253 (504)
T KOG0624|consen 178 ITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLD-- 253 (504)
T ss_pred HHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--
Confidence 6666543 22455566666667777777777766666655543222 2344455556666777777776666665543
Q ss_pred CCHHH----HHH-------H--HHHHHHcCChhHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHccccHHHHHHHHHHh
Q 009424 385 YDPRI----ANL-------M--MSWYVKEGNFDKAEAFFNSIIEEGGKPNST---SWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 385 ~~~~~----~~~-------l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
||... |-. | +......+++.++..-.+...+..+..... .+..+-.++...|++.+|++...+.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 33211 111 1 122345677777777777777654432223 3445556777889999999999999
Q ss_pred HHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 449 FAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 449 ~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
. .+.|| ..++.-=..|+.-..+++.|..-|+...+.+..++.
T Consensus 334 L------~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 334 L------DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred H------hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 9 57776 557766677888778888888888888777666554
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.1e-05 Score=77.50 Aligned_cols=221 Identities=12% Similarity=0.060 Sum_probs=113.5
Q ss_pred HHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 153 IAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
+.+.|++.+|.-.|+..... +.+...|--|-...+.+++-..|+..+++..+.. +-|....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 45556666666666655443 3345566666666666666666666666665543 223444445555555566666666
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009424 232 SMVSEMKEKGIR--------LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEE 303 (535)
Q Consensus 232 ~~~~~m~~~g~~--------pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (535)
..++.-.+...+ ++...-+. +.+.....+....++|-++....+..+|..+...|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 665554433210 00000000 11112222334445555544434433455555555555666666666666
Q ss_pred HHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 304 SLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 304 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
.|+.... ++| |..+||-|-..++...+.++|+..|++..+..|.--. ....|.-+|...|.+++|.+.|-.++
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6666654 233 3446666666666666666666666666664333222 22334445566666666665554443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=4.3e-05 Score=75.57 Aligned_cols=239 Identities=12% Similarity=0.098 Sum_probs=181.5
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHH
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM 218 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 218 (535)
+++-...-..+...+.++|-+..|..+|+++ ..|.-+|.+|...|+..+|..+..+-.++ +||...|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 4555666777888999999999999999865 46888999999999999999998887774 68888899988
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009424 219 TLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298 (535)
Q Consensus 219 ~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 298 (535)
+......-+++|.++++..-.+ .-..+-....+.++++++.+.|+.-.+-. +-...+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 8888888889999998765433 11112222234789999999998776543 44566888888889999999
Q ss_pred HHHHHHHHHHHhcccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 299 EKAEESLRRVESRITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 299 ~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
+.|.+.|..-.. ..|| ...||.+-.+|.+.++-.+|...+.+..+....+. ..|...+....+.|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhhhhhcccHHHHHHHHHH
Confidence 999999988765 4555 45899999999999999999999999988764433 4566666777899999999999988
Q ss_pred HHhcCC-CCCHHHHHHHHHHHH
Q 009424 378 WLSVKS-SYDPRIANLMMSWYV 398 (535)
Q Consensus 378 ~~~~~~-~~~~~~~~~li~~~~ 398 (535)
+..... ..|..+...++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 875431 125555554444443
No 113
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=0.0002 Score=67.16 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCh----hHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE---GNF----DKA 406 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A 406 (535)
++++.+++++.+..++ +...|+...-++...|+++++.+.++++++.++. |...|+.....+.+. |.. +++
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 3445555455443222 2244444444555555555555555555554443 444444433333332 111 344
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHcc----ccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcC------
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRE----RRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEES------ 475 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g------ 475 (535)
..+..++....+. |...|+.+...+... ++..+|.+.+.+.. . ..| +...+..|+..+....
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~----~--~~~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL----S--KDSNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh----c--ccCCcHHHHHHHHHHHHhhhccchhh
Confidence 4555455544333 556666665555552 23345666666655 2 223 3344555555554321
Q ss_pred ------------ChhhHHHHHHHHh
Q 009424 476 ------------DMGSKEAFVALLR 488 (535)
Q Consensus 476 ------------~~~~a~~~~~~~~ 488 (535)
..++|.++++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHH
Confidence 3466777777773
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=2.9e-05 Score=70.32 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=26.2
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
..|.+.|++++|+..+++..+..+. -......+..+..++...|++++|..+++.+..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPD--TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555421100 011234444555555555555555555554443
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=2.4e-05 Score=70.90 Aligned_cols=166 Identities=14% Similarity=0.090 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc----chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR----VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL- 353 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~- 353 (535)
......+..+...|.+.|++++|...|+++.... |+. ..+..+..++.+.|++++|+..++++.+..+.....
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456677888888899999999999999886643 332 356677788888999999999999998866654432
Q ss_pred -hHHHHHHHHHhc--------CCHhhHHHHHHHHHhcCCCCCHHHHH-----------------HHHHHHHHcCChhHHH
Q 009424 354 -GYHAMISSLARI--------GDIEGMEKIFEEWLSVKSSYDPRIAN-----------------LMMSWYVKEGNFDKAE 407 (535)
Q Consensus 354 -~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~li~~~~~~g~~~~A~ 407 (535)
++..+..++... |+.++|.+.++.+.+..+. +...+. .+...|.+.|++++|.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 344444444443 5667777777777665433 222221 2344556667777777
Q ss_pred HHHHHHHHcCCCCCH----hHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 408 AFFNSIIEEGGKPNS----TSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+++.. ...|+. ..+..+..++.+.|++++|..+++.+.
T Consensus 187 ~~~~~al--~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 187 NRFETVV--ENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHH--HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7666644 334442 456667777777777777777776665
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=5.2e-05 Score=66.06 Aligned_cols=117 Identities=9% Similarity=0.103 Sum_probs=68.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCC--hhHH
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW-YVKEGN--FDKA 406 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 406 (535)
.++.++++..++......+. +...|..+...|...|++++|...+++..+..+. +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554333 3345666666666666666666666666655543 55555555554 345555 3666
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666665444 55566666666666666666666666666
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=7.9e-05 Score=64.90 Aligned_cols=161 Identities=9% Similarity=0.080 Sum_probs=120.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
+..|.+.|+++.+..-.+.+.. +. . .+...++.+++...++..++..+. |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4567788887776444322211 11 0 112356677888888888777655 899999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHH-Hcccc--HHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhh
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGH-IRERR--ILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGS 479 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~ 479 (535)
++|...|++....... +...+..+..++ .+.|+ .++|.+++++.. ...|+ ...+..+...+...|++++
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al------~~dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKAL------ALDANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH------HhCCCChhHHHHHHHHHHHcCCHHH
Confidence 9999999999987655 788888888764 67777 599999999999 45564 4567777778899999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 480 KEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
|...++++.+..+..+..+..+ +..
T Consensus 163 Ai~~~~~aL~l~~~~~~r~~~i-~~i 187 (198)
T PRK10370 163 AIELWQKVLDLNSPRVNRTQLV-ESI 187 (198)
T ss_pred HHHHHHHHHhhCCCCccHHHHH-HHH
Confidence 9999999999887766554433 544
No 118
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=8.1e-05 Score=74.49 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=100.4
Q ss_pred cCHhHHHHHHH--HHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CC--------Cc
Q 009424 141 LSASDAAIQLD--LIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDK-GY--------AV 209 (535)
Q Consensus 141 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p 209 (535)
.+..+-.++++ .|..-|+++.|.+-...+. +..+|..|.++|++.++++-|.-.+..|... |. .|
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 44555555554 5677899999888777774 6688999999999999999888887777542 21 12
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
+ .+-.-+.-...+.|.+++|+.+|++.++.+ .|=+.|-..|.|++|.++-+.-.+ + .=..||..-.
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA 865 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYA 865 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHH
Confidence 2 222233334457888999999999888763 233456678899998887654331 1 1123555555
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 009424 290 TMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m 308 (535)
..+-..+|.+.|++.|++.
T Consensus 866 ~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHhhccHHHHHHHHHhc
Confidence 5555677888888887753
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.38 E-value=5.4e-07 Score=53.82 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVH 210 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 210 (535)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455566666666666666666666655555554
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=0.00057 Score=70.22 Aligned_cols=394 Identities=13% Similarity=0.004 Sum_probs=203.0
Q ss_pred chHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHH
Q 009424 72 KWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQL 150 (535)
Q Consensus 72 ~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li 150 (535)
.|..|-.-|....+.. .|...|+...+ +.+ |..........+++..+++.|..+.-..-+.. +...-...+-...
T Consensus 494 af~~LG~iYrd~~Dm~-RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMK-RAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcc
Confidence 3444444444444444 55555555443 333 34445566667777777777776622211111 0111111122233
Q ss_pred HHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHH--HHHHhcCCh
Q 009424 151 DLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM--TLYMKIKEY 227 (535)
Q Consensus 151 ~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~ 227 (535)
-.|.+.++...|..-|+...+. +.|...|..+..+|.++|++..|.++|.+..... |+ .+|...- ..-+..|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhH
Confidence 3455666777777777766555 5577888888899999999999999998876653 32 2333222 223456788
Q ss_pred hHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhcCCCH-------hHHHHHHHHhHhCCCCCCCHHHHHHHHHHH--
Q 009424 228 DEVESMVSEMKEKG------IRLDVYSYNIWLSSCGSQGST-------EKMEGVFELMKVDKAVNPNWTTFSTMATMY-- 292 (535)
Q Consensus 228 ~~a~~~~~~m~~~g------~~pd~~~~~~ll~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-- 292 (535)
.+++..+......- ..--..++--+...+...|-. +++++.|.-...+. ...+...|-.+-+++
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~-~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS-LQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh-hhhhHHHHHHHhHHHHH
Confidence 88888777665431 000111221122222222222 22333332222211 112222222222211
Q ss_pred ---------------------HhcCCH---H---HHHHHHHHHHhcccCCCcchHHHHHHHHHh----cC----CHHHHH
Q 009424 293 ---------------------IKMGQV---E---KAEESLRRVESRITGRDRVPYHYLLSLYGS----VG----KKEEVY 337 (535)
Q Consensus 293 ---------------------~~~g~~---~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g----~~~~a~ 337 (535)
-+.+.. | -+.+.+-.-.+ ...+..+|..+...|.+ .| +...|+
T Consensus 726 f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 726 FSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 111111 1 01111111000 11234455444443333 11 234566
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009424 338 RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417 (535)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 417 (535)
..+....+.... +..+|+.+.-. ...|.+.-+.-.|-.-....+. ...+|..+.-.+.+..+++-|...|...+...
T Consensus 804 ~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 804 RCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence 666665553221 33556555444 5556666666665554443332 56677777777888889999999999888765
Q ss_pred CCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhh
Q 009424 418 GKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 418 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~ 479 (535)
+. |...|--........|+.-++..+|..-.+.....|-.|+..-|.....-....|+.++
T Consensus 881 P~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 881 PL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred ch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 44 67778776666667888888888888744333355556666656555555555555443
No 121
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=0.00049 Score=70.68 Aligned_cols=360 Identities=11% Similarity=-0.033 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 009424 122 YKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLID 200 (535)
Q Consensus 122 ~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 200 (535)
...++..|=+..+.. +.-...+..+.+.|+...+...|.+.|+...+. ..|...+....+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 455555555555543 334567888899999888999999999998776 4577889999999999999999999843
Q ss_pred HHHHCC-CCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC
Q 009424 201 KMRDKG-YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN 279 (535)
Q Consensus 201 ~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 279 (535)
.--+.. ...-...|....-.|.+.++...++.-|+...+..+ -|...|..+..+|..+|.+..|.++|.+... +.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL---LR 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cC
Confidence 322221 000112344444556778888899999988887753 4788899999999999999999999988774 24
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcc------cCCCcchHHHHHHHHHhcCCHHHHHHHHHH-------HHh
Q 009424 280 PNWT-TFSTMATMYIKMGQVEKAEESLRRVESRI------TGRDRVPYHYLLSLYGSVGKKEEVYRVWNL-------YRS 345 (535)
Q Consensus 280 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------m~~ 345 (535)
|+.. .---...+-+..|.+.+|...+......- ..--..++..+...+...|-..++..+++. ...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4432 22222334566788888888887764321 111111222222233333333333333332 211
Q ss_pred hCCCCchhhHHHHHHHH-----------------------HhcCCH---h---hHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 346 VFPGVTNLGYHAMISSL-----------------------ARIGDI---E---GMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 346 ~~~~~~~~~~~~ll~~~-----------------------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
.....+...|-.+-++| -..+.. + .|.+.+-.-. ....+...|..+..-
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHH
Confidence 11111112222222222 111111 1 0111111100 011123334333333
Q ss_pred HHH----cC----ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 397 YVK----EG----NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 397 ~~~----~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
|.+ +| +...|...+.......-. +..+|+.|.-. ..-|++.-|...|-+.. . -.+-+..+|..+-
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~----~-sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSR----F-SEPTCHCQWLNLG 857 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhh----h-ccccchhheeccc
Confidence 322 22 223566777666653222 67777776655 55566666666666555 1 1233456777777
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCChhh
Q 009424 469 KACEEESDMGSKEAFVALLRQPGYRKEKD 497 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 497 (535)
-.|....+++.|...|.......|.+...
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~ 886 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQ 886 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHH
Confidence 77777888888888888887777765543
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=3.1e-05 Score=63.68 Aligned_cols=90 Identities=9% Similarity=-0.074 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcccc
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 437 (535)
....+...|++++|...|.......+. +...|..+..++.+.|++++|...|++..+.++. +...|..+..++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 344444455555555555554443322 4444445555555555555555555555543322 44444445555555555
Q ss_pred HHHHHHHHHHhH
Q 009424 438 ILEALSCLKGAF 449 (535)
Q Consensus 438 ~~~A~~~~~~m~ 449 (535)
+++|++.|+...
T Consensus 108 ~~eAi~~~~~Al 119 (144)
T PRK15359 108 PGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.00025 Score=74.25 Aligned_cols=201 Identities=11% Similarity=0.069 Sum_probs=111.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS-YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM 288 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 288 (535)
+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------hh
Confidence 4556777888888888888888888766554 344332 22222245555554444443 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI 368 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 368 (535)
++......++.....+...|.+.+ -+...+..+..+|-+.|+.+++..+|+++.+..+. +....|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 222333333333333333443321 22335666777777778888888888877775422 345667777777777 77
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------------------CCCHhHHHHHH
Q 009424 369 EGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-------------------KPNSTSWETLA 429 (535)
Q Consensus 369 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------------~p~~~~~~~li 429 (535)
++|++++.+++.. |...+++..+..+|.++.+..+ ..-+.++-.+-
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 7777777766543 4444455555555555554321 11223333333
Q ss_pred HHHHccccHHHHHHHHHHhH
Q 009424 430 EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~ 449 (535)
..|-..++|++++++++.+.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHH
Confidence 44555555555555555555
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.2e-06 Score=52.20 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=31.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998873
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.30 E-value=5.5e-05 Score=62.25 Aligned_cols=122 Identities=16% Similarity=0.071 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh
Q 009424 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAA 451 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (535)
..++++.++. ++..+..+...+...|++++|...|+......+. +...|..+...+.+.|++++|+..|+.+.
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-- 85 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHAL-- 85 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH--
Confidence 3455555443 3334556778889999999999999999986554 78899999999999999999999999999
Q ss_pred ccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 452 EGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 452 ~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
...| +...+..+..++...|+.++|...++..++..+.....+......
T Consensus 86 ----~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 86 ----MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred ----hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445 556788888889999999999999999999988876655444433
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.00042 Score=71.84 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=99.6
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
.+...+..|.....+.|..++|..+++...+..|.. ......+...+.+.+++++|....++.....+. +......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 456677777788888888888888888887743332 245667777788888888888888888776654 667777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.++.+.|++++|..+|++....+.. +..++..+..++...|+.++|...|+++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888888874332 47778888888888888888888888887
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.001 Score=63.37 Aligned_cols=196 Identities=15% Similarity=0.048 Sum_probs=111.1
Q ss_pred HhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHH
Q 009424 159 VASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234 (535)
Q Consensus 159 ~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 234 (535)
+.+++..-+.++.. .++...+...+.+......-..+-.++.+-.+.+ -...+--..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHHHH
Confidence 44445455555443 3455555555554444333333333333322211 1222333333444667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009424 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRIT 313 (535)
Q Consensus 235 ~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 313 (535)
+.+... .+-|...+......+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|+..+|..+++......
T Consensus 330 ~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 330 QPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 776665 2234444445556677777777777777777642 344 5556666777777777777777777765442
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 314 GRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
+-|...|..|.++|...|+..++..-..+... ..|+++.|...+....+
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQ 453 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHH
Confidence 34666777777777777777777666665532 34566666666655544
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00029 Score=61.49 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=110.2
Q ss_pred HHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHh
Q 009424 250 NIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329 (535)
Q Consensus 250 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (535)
.-+-..+...|+-+....+....... -+.|.......+....+.|++..|...|.+...- -++|..+|+.+--+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHH
Confidence 44555666677777777666665432 2556666666777777788888888888777642 33566678888788888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAF 409 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 409 (535)
.|+.++|..-|.+..+..+.-+ ..++.+.-.+.-.|+.+.|..++......+.. |..+-..+.-.....|++++|.++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p-~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEP-SIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCc-hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 8888888888877777544432 45677777777778888888888877655443 666777777777788888888877
Q ss_pred HHHH
Q 009424 410 FNSI 413 (535)
Q Consensus 410 ~~~m 413 (535)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00052 Score=71.97 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHH
Q 009424 247 YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSL 326 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 326 (535)
..+-.+..+|-+.|+.+++..+++++.+-. +.|..+.|.+...|+.. ++++|.+++.+....
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 455556666666666666666666666432 44566666666666666 666666666655332
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChhH
Q 009424 327 YGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV-KSSYDPRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 327 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 405 (535)
|...+++.++.++|.++....+ +. ++.-.++.+.+... +..--..++--+-..|....++++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~--~d---------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNS--DD---------------FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCc--cc---------------chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 4444555555555555554221 11 11112222222221 222233444455566666777777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 406 AEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
+..+++.+.+...+ |.....-++..|.
T Consensus 242 ~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 77777777765444 5555555555554
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.4e-06 Score=51.50 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCc
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAV 209 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 209 (535)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.0004 Score=72.00 Aligned_cols=206 Identities=10% Similarity=-0.038 Sum_probs=148.1
Q ss_pred HHHHhcCChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 219 TLYMKIKEYDEV-ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297 (535)
Q Consensus 219 ~~~~~~g~~~~a-~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 297 (535)
.+.+.-|..++| .+++.+.. .++...+.......+.--.....++ ...+...+-.|.....+.|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~ 101 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLVARALEAAHR 101 (694)
T ss_pred HHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCC
Confidence 344555665555 34443332 2333344434444444333333333 36678899999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 298 VEKAEESLRRVESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
+++|..+++...+ ..||.. .+..+...+.+.+++++|+..+++.....+.. ......+..++.+.|+.++|..+|+
T Consensus 102 ~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 102 SDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-AREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred cHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999977 456654 67778899999999999999999998854442 2566788889999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 377 EWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
++...+.. +..++..+..++.+.|+.++|...|+...+. ..|....|+.++ ++...-..++++..
T Consensus 179 ~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 179 RLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 99984433 5889999999999999999999999999874 223455555544 34444555666655
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00093 Score=63.57 Aligned_cols=208 Identities=13% Similarity=0.036 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 227 YDEVESMVSEMKEKG--IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
+.++.+.-+.|...+ -.|+...+...+.+......-..+...+.+..+ +-....+-...-.+...|+.++|+..
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK----RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC----ccchHHHHHHHHHHHHhcccchHHHH
Confidence 344444444443322 234555555555544443333333333333332 11222333334446678889999999
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
++.+... .+-|...+......+...++.++|.+.++++....+.. ....-.+..++.+.|++.+|..+++......+.
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9988764 22345555666788889999999999999988855543 345567788888999999999999888766554
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNV 464 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~ 464 (535)
|+..|..|..+|...|+..+|.... ..+|...|++++|+..+....+ .++++..+|
T Consensus 407 -dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~-----~~~~~~~~~ 462 (484)
T COG4783 407 -DPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQ-----QVKLGFPDW 462 (484)
T ss_pred -CchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHH-----hccCCcHHH
Confidence 8889999999999999887776543 3456678889999988888873 234454444
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.24 E-value=0.00031 Score=61.34 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 009424 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI 365 (535)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 365 (535)
.-+-..+...|+-+....+....... ...|.......+....+.|++.+|+..|++.....+ +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 44455555666666666665554321 122333444466666666777777777776665321 2335666666667777
Q ss_pred CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHH
Q 009424 366 GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCL 445 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 445 (535)
|+++.|..-|.+..+.... ++...|.+.-.|.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777666666655433 4555666666666667777777766666654333 5555555566666666666666655
Q ss_pred HHh
Q 009424 446 KGA 448 (535)
Q Consensus 446 ~~m 448 (535)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0016 Score=57.07 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=104.4
Q ss_pred HHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC
Q 009424 304 SLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 383 (535)
+.+.+.......+.+....-...|.+.|++++|++....... . .....=+..+.+..+++.|.+.++.|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----l--E~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----L--EAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 334443333333323333334567777777777777665211 1 122222334456667777777777776543
Q ss_pred CCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC
Q 009424 384 SYDPRIANLMMSWYVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
+..+.+-|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..+++++. +.. .-
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL----~kd-~~ 239 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL----DKD-AK 239 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH----hcc-CC
Confidence 44555555555544 45677788888888763 45677777777777788888888888888887 332 33
Q ss_pred CHHHHHHHHHHHHhcCCh-hhHHHHHHHHhcCCCCC
Q 009424 460 KPVNVINFFKACEEESDM-GSKEAFVALLRQPGYRK 494 (535)
Q Consensus 460 ~~~~~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~ 494 (535)
++.|+..++-.....|.. +.-.+.+.++....+..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 456666666655555544 44455666666555443
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0013 Score=57.53 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=122.0
Q ss_pred HHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 339 VWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
+.+.+.......+......-...|++.|++++|.+..... - +......=+..+.+..+++-|.+.++.|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 3344444333333333334445688999999999988752 1 4444444456677888999999999999973
Q ss_pred CCCHhHHHHHHHHHHc----cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 419 KPNSTSWETLAEGHIR----ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
-+..|.+.|..++.+ .+...+|.-+|++|- ....|+..+.+....+|...|++++|..+++.........
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s-----~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS-----EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-----cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 266777777777754 356899999999998 2478999999999999999999999999999999887776
Q ss_pred hhhH-HHHHHHhHhhhhcccccCCCCCChhHHHHHHhhhh
Q 009424 495 EKDY-MSLIGLTDEAVAENNKKNDEDSDEDSEMLLSQLQF 533 (535)
Q Consensus 495 ~~~~-~~L~~~y~~~~~~~~~~~~i~~~~~~~~l~~~l~~ 533 (535)
+.+. |.++-+. +.-.+++.+.+.++||+.
T Consensus 241 petL~Nliv~a~----------~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLAL----------HLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHH----------HhCCChHHHHHHHHHHHh
Confidence 6543 4444444 233445566677777654
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=3.1e-06 Score=50.04 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL 244 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 244 (535)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=8.5e-05 Score=60.63 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
..+...+...|+.++|.+.++.+...++. +...+..+...|.+.|++++|..+++...+.+.. +...|..+...|...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 34444445555555555555555444322 4455555555555555555555555555443322 344444455555555
Q ss_pred ccHHHHHHHHHHhH
Q 009424 436 RRILEALSCLKGAF 449 (535)
Q Consensus 436 g~~~~A~~~~~~m~ 449 (535)
|++++|++.|+...
T Consensus 99 g~~~~A~~~~~~al 112 (135)
T TIGR02552 99 GEPESALKALDLAI 112 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555555
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0015 Score=56.83 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=117.2
Q ss_pred cCCCCccHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhC
Q 009424 83 MDNPQLGSASVLNDWEKG---G-RSLTKWE-LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVH 157 (535)
Q Consensus 83 ~g~~~~~a~~~~~~m~~~---g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g 157 (535)
..+++ +.++++.++... | ..++.++ |..++-+....++.+.|...++.+... ++.+..+...-...+-..|
T Consensus 25 ~rnse-evv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~---fp~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 25 VRNSE-EVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR---FPGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccCHH-HHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhh
Confidence 34666 888888888543 5 6677776 567777777888889999988887766 4555555444444555667
Q ss_pred CHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHH
Q 009424 158 GVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSE 236 (535)
Q Consensus 158 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 236 (535)
.+++|.++++.+.+. +.|.+++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+++
T Consensus 101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 777777777776665 345566665555555566666666666665553 345667777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcC---CCHhHHHHHHHHhHh
Q 009424 237 MKEKGIRLDVYSYNIWLSSCGSQ---GSTEKMEGVFELMKV 274 (535)
Q Consensus 237 m~~~g~~pd~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 274 (535)
+.-.. +.+..-+..+...+.-. .+++.++++|.+..+
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66542 22333333333333222 244556666666654
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00015 Score=59.07 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=92.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhcc
Q 009424 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG 453 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (535)
.++.+....+. +......+...+...|++++|...|+.....+.. +...|..+...+...|++++|...++...
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~---- 78 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAA---- 78 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 45555554433 4556677888899999999999999999886544 78889999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 454 AKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 454 ~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
... ..+...+..+...+...|++++|...++...+..+....
T Consensus 79 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 79 ALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 222 334567777777899999999999999999998766544
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.04 E-value=4.6e-06 Score=48.05 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKG 206 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 206 (535)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.031 Score=57.50 Aligned_cols=209 Identities=11% Similarity=0.098 Sum_probs=127.7
Q ss_pred cccccccccccccccchHHHHHHH--hccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHh
Q 009424 57 IHSYGTVDFERRPMIKWNAIFRKL--SLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNN 134 (535)
Q Consensus 57 ~~~~~~~~~~~~~~~~~n~li~~~--~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 134 (535)
+..+|.+---.||. .|..++.++ .|.|..+ +|..+++.....+.. |..|...+-..|.+.+..+++..+|++..+
T Consensus 29 l~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~-ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 29 LAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGD-EALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCch-hHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44555554444554 456666666 4668888 888777777655444 777888888888888888888888888877
Q ss_pred cCCCcccCHhHHHHHHHHHHhhCCHhh----HHHHHhhCCCCCCCHHHHHHHHHHHHHcCC----------HhHHHHHHH
Q 009424 135 RGERFRLSASDAAIQLDLIAKVHGVAS----AEDFFLSLPDTLKDRRVYGALLNAYVRARM----------RGNAELLID 200 (535)
Q Consensus 135 ~g~~~~~~~~~~~~li~~~~~~g~~~~----A~~~f~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~ 200 (535)
.. |+......+..+|.+.+.+.+ |.+++...++ +...+=++++.+.+.-. ..-|.+.++
T Consensus 106 ~~----P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 106 KY----PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred hC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 64 236666777777777776654 5556655554 44433344454444311 233555666
Q ss_pred HHHHCC-CCcCcchHHHHHHHHHhcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 201 KMRDKG-YAVHSLPYNVMMTLYMKIKEYDEVESMVS-EMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 201 ~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
.+.+.+ ---+..-...-...+...|++++|++++. ...+.-..-+...-+--+..+...+++.+-.++-.++...
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 665543 11111112222334456677888888883 3333333445555556677778888888888887777754
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.009 Score=52.10 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=74.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
-+....|+.+.|...++.+....+....+ -..-.--+-..|++++|.++++.+++..+. |..++-.=+-..-..|+--
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV-~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRV-GKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcH
Confidence 33444455555555555555543322211 000111122345555556665555554422 4444444444444455555
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhc---CChhhH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEE---SDMGSK 480 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~---g~~~~a 480 (535)
+|++-+....+. +.-|...|.-+...|...|++++|.-.++++. =+.|-.. .|..+.....-. .+++.+
T Consensus 138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l------l~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL------LIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH------HcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555554443 22256666666666666666666666666655 2344332 222332222222 235555
Q ss_pred HHHHHHHhcCCC
Q 009424 481 EAFVALLRQPGY 492 (535)
Q Consensus 481 ~~~~~~~~~~~~ 492 (535)
++++.+.++..+
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 566666555554
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00036 Score=66.79 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=54.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH
Q 009424 326 LYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 405 (535)
.+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+.++..+. +......-...|.+.++.+.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 3333444455555555544432 11 1223344444444444555555544433222 34444444444555555555
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 406 AEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|+.+.+++.+..+. +..+|..|..+|.+.|++++|+..++.+.
T Consensus 253 AL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555543221 33455555555555555555555555443
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00046 Score=66.13 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
..-.+|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++++..+.. +-|...+....+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556666667788999999999988874 43 45557777878888888888888888653 33666666667778
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
.+.++.+.|.++.+++.+. .+.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888889999998888853 23444588889999999999999988888763
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00037 Score=57.57 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCChhH
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP--RIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 405 (535)
.++...+...++.+...++...- ...-.+...+...|++++|...|+.+......++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555665566666554443321 22223345556666666666666666655422221 233345556666666666
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHh
Q 009424 406 AEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
|+..++...... .....+......|.+.|++++|...|+.+
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666665533221 13334555556666666677666666653
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=1.3e-05 Score=46.07 Aligned_cols=31 Identities=32% Similarity=0.717 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGI 242 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 242 (535)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 147
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.84 E-value=0.00025 Score=60.29 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=68.9
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC------------
Q 009424 163 EDFFLSLPDTLKDRRVYGALLNAYVRA-----RMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK------------ 225 (535)
Q Consensus 163 ~~~f~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------------ 225 (535)
...|++.....+|..+|..+|+.|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 445555533347888888888888754 677777778888888898889999999888775421
Q ss_pred ----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 226 ----EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 226 ----~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
+-+-|++++++|...|+-||..|+..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 224566666666666666666666666666655554
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.84 E-value=0.0003 Score=67.68 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=84.6
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH
Q 009424 314 GRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF--PGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391 (535)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 391 (535)
.-+.+....++..+....+++++..++.+.+... ...-..|..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3455566667777777777777777777776642 11222455677888888888888888877777777778888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888877777655555666666656555544
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.82 E-value=0.0002 Score=68.86 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=89.6
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHH
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYN 215 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 215 (535)
+.+......+++......+++.+..++.+.... .--..+..++|..|.+.|..++++.+++.=...|+-||..|+|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555666666665554433 0112345689999999999999999999888999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 009424 216 VMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ 259 (535)
Q Consensus 216 ~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 259 (535)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988887777777777777776665
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.82 E-value=0.00033 Score=52.67 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CcCcchHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGY-AVHSLPYNVMMTLYMKIK--------EYDEVESMVSEMKEKGIRLDVYS 248 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~pd~~~ 248 (535)
+-...|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-+.+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677888888999999998888 888999999888877653 23467788888888888888888
Q ss_pred HHHHHHHHhc
Q 009424 249 YNIWLSSCGS 258 (535)
Q Consensus 249 ~~~ll~~~~~ 258 (535)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876644
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00055 Score=54.25 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C-CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC----HHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-P-NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----PVN 463 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----~~~ 463 (535)
+..+...+.+.|++++|.+.|+.+...... | ....+..+...+.+.|++++|.+.|+.+.. ..|+ ...
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~ 78 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK------KYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH------HCCCCCcccHH
Confidence 344455555566666666666655543211 0 123344455556666666666666666551 1122 233
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+..+..++.+.|+.++|.+.++++++..+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 444445555566666666666666655554433
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.00055 Score=56.51 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=39.7
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDTLKDR----RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK 225 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 225 (535)
...+...|++++|...|+.+....+|. ...-.|...+...|++++|+..++......+ ....+....+.+.+.|
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCC
Confidence 344444455555555554444332222 1233344555555555555555544332222 2233444555555566
Q ss_pred ChhHHHHHHHH
Q 009424 226 EYDEVESMVSE 236 (535)
Q Consensus 226 ~~~~a~~~~~~ 236 (535)
+.++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666555543
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.00043 Score=64.10 Aligned_cols=130 Identities=11% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh-hCCHhhHHHHHhhCCCC-CCCHHHHHHHHH
Q 009424 107 WELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK-VHGVASAEDFFLSLPDT-LKDRRVYGALLN 184 (535)
Q Consensus 107 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~-~~~~~~~~~li~ 184 (535)
.+|..+++.+-+.+..+.|+++|..+.+.+ ..+..+|.....+-.. .++.+.|.++|+...+. ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 356667777777777778888887777544 2333444444444233 35555577777776554 556777777777
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcCc---chHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVHS---LPYNVMMTLYMKIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 240 (535)
.+.+.|+.+.|+.+|++.... +.++. ..|...+..=.+.|+.+.+.++..++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777788888888888777654 22222 36777777777777777777777777665
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.0012 Score=61.21 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTL-YMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
+|-.++...-+.+..+.|+.+|.+.++.+ .-+...|...... |...++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555554322 0111112211111 11123334455555554443 233444444444555
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNW---TTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
.+.++.+.|+.+|+..... +.++. ..|...+..=.+.|+++.+.++.+++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555554432 11111 244444444444455554444444443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.001 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=10.1
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHh
Q 009424 424 SWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
++..+...+...|++++|.+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333444444444444444433
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00087 Score=50.17 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
++..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++... ... ..+..++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKAL----ELD-PDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCC-CcchhHHHHHH
Confidence 3556677788899999999999998875333 44678888889999999999999999988 322 23345777888
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCC
Q 009424 469 KACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
..+...|+++.|...+....+..+
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccCC
Confidence 889999999999999998887654
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.0014 Score=63.03 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=59.6
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
.+...|+++.|...+.++++.... +...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 344556666666666666655443 4555566666666666666666666666654332 45556666666666666666
Q ss_pred HHHHHHHhHHhccCCCCCCCHHHHHHHHHHH
Q 009424 441 ALSCLKGAFAAEGAKSWRPKPVNVINFFKAC 471 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~ 471 (535)
|+..|+++. .+.|+...+...+..|
T Consensus 89 A~~~~~~al------~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGA------SLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHH------HhCCCCHHHHHHHHHH
Confidence 666666666 3445554444444433
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0035 Score=53.43 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYD--PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33334444444444444444444443322211 234444444555555555555555544443221 233344444444
Q ss_pred Hcccc
Q 009424 433 IRERR 437 (535)
Q Consensus 433 ~~~g~ 437 (535)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.013 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=10.2
Q ss_pred HHHHHHHccccHHHHHHHHHHhH
Q 009424 427 TLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-+...+.+.|++++|+++|++..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444445555555554443
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0011 Score=50.04 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKS-SYDPRIANLMMSWYVKEG--------NFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
.|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33444444555555555555555555 455555555555544432 122333444444444444444444444
Q ss_pred HHHH
Q 009424 429 AEGH 432 (535)
Q Consensus 429 i~~~ 432 (535)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4433
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0044 Score=48.93 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSSY--DPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..++.+.|+++.|...++.+....+.. ...++..+..++.+.|+.++|.+.++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3444444444444444444443322110 122333444444444444444444444444
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.0013 Score=58.76 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009424 327 YGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 327 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
..+.+++.+|+..|.+.....+. +.+-|..=..+|++.|..+.|.+=-+..+..... -...|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 33445555555555555543222 2234444445555555555555544444333221 234455555555555555555
Q ss_pred HHHHHHHHH
Q 009424 407 EAFFNSIIE 415 (535)
Q Consensus 407 ~~~~~~m~~ 415 (535)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555554444
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.48 E-value=0.0004 Score=51.12 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=39.8
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCCh
Q 009424 400 EGNFDKAEAFFNSIIEEGGK-PNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDM 477 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~ 477 (535)
.|+++.|+.+|+++.+.... |+...|-.+..+|.+.|++++|++++++ . ...|+. .....+..++...|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~------~~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L------KLDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H------THHHCHHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h------CCCCCCHHHHHHHHHHHHHhCCH
Confidence 35566666666666554331 1333444456666666666666666655 3 122222 2222334455566666
Q ss_pred hhHHHHHHH
Q 009424 478 GSKEAFVAL 486 (535)
Q Consensus 478 ~~a~~~~~~ 486 (535)
++|.+++++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666553
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.47 E-value=0.036 Score=50.06 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVP--YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSL 362 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 362 (535)
+-.....+.+.|++++|.+.|+.+...-+...... .-.+..+|.+.+++++|+..+++..+..|..+..-+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33344456678889999999988876433221111 1235577788889999999999988877776666665555554
Q ss_pred HhcCCHhhHHHHHHHHHhc-CCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 363 ARIGDIEGMEKIFEEWLSV-KSSYDP-------RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+.... ....+...... ....|. ..+..+|+-|-...-..+|...+..+.+. =...--.+..-|.+
T Consensus 115 ~~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~ 187 (243)
T PRK10866 115 TNMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTK 187 (243)
T ss_pred hhhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 42100 00011100000 000010 12334444444445556666555555431 11111245566889
Q ss_pred cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 435 ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
.|.+..|+.-++.+.+.-+ +..........+..++...|..++|..+...+.
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp--~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYP--DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred cCchHHHHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 9999999999999984221 222344567778889999999999998877654
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00028 Score=51.89 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=37.0
Q ss_pred CCHhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHH
Q 009424 366 GDIEGMEKIFEEWLSVKSS-YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555544332 1333334455555555555555555555 211111 222333334555556666666655
Q ss_pred HHH
Q 009424 445 LKG 447 (535)
Q Consensus 445 ~~~ 447 (535)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.0036 Score=60.16 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=86.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACE 472 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~ 472 (535)
...+...|++++|+..|++..+.... +...|..+..+|.+.|++++|+..++++. .+.| +...|..+..+|.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al------~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAI------ELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCcCCHHHHHHHHHHHH
Confidence 45566789999999999999987655 78888899999999999999999999999 3456 4557777888999
Q ss_pred hcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 473 EESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
..|++++|...+++.++.++........+..+
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999988776654444433
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.01 Score=59.68 Aligned_cols=143 Identities=10% Similarity=0.047 Sum_probs=82.3
Q ss_pred cCCCcchHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC--------CHhhHHHHHHHHH
Q 009424 313 TGRDRVPYHYLLSLYGSVG-----KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG--------DIEGMEKIFEEWL 379 (535)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~ 379 (535)
...|...|...+++..... ..+.|+.+|++..+..|.- ...|..+..++.... ++..+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4456677777777654432 2667888888887744332 133333333222211 1223333333322
Q ss_pred hcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCC
Q 009424 380 SVK-SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWR 458 (535)
Q Consensus 380 ~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~ 458 (535)
... ...++..|.++.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++++. .+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~------~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF------NLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hcC
Confidence 221 22345566666555566677777777777777643 566677777777777777777777777777 455
Q ss_pred CCHHHH
Q 009424 459 PKPVNV 464 (535)
Q Consensus 459 p~~~~~ 464 (535)
|...||
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 655554
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.0039 Score=52.96 Aligned_cols=93 Identities=12% Similarity=-0.004 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSY--DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
.+..+...+...|++++|...++........+ ...++..+...|.+.|+.++|+..+++....... ...++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34455555556666666666666665443222 1235566666666667777777766666653221 23444444444
Q ss_pred HH-------ccccHHHHHHHHHH
Q 009424 432 HI-------RERRILEALSCLKG 447 (535)
Q Consensus 432 ~~-------~~g~~~~A~~~~~~ 447 (535)
+. ..|++++|+..+++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 44 55665544444443
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.36 E-value=0.0049 Score=60.56 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
+...-+++|+++|-.|+... +...++-.|++.+|-++|.+ .|.. +-.+.+|.....+|.|.++...-.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 44445667788887676543 34556667888888888753 3322 123344444444444444332110
Q ss_pred ---------hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 274 ---------VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 274 ---------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 344 (535)
++.....|+.-=.+...++...|+.++|..+ +..+|-.+-++++-+++.
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i----------------------~~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEI----------------------CGDHGWVDMLIDIARKLD 743 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhh----------------------hhcccHHHHHHHHHhhcc
Confidence 0000000000001122233333433333322 223333344444433332
Q ss_pred hhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhH
Q 009424 345 SVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTS 424 (535)
Q Consensus 345 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 424 (535)
.. +..+...+..-+-+...+..|-++|..|-.. ..++++....+++++|..+-++..+. .||+..
T Consensus 744 ~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~ 808 (1081)
T KOG1538|consen 744 KA----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYM 808 (1081)
T ss_pred hh----hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccc
Confidence 21 2234444444555666677777777766321 24667777788888888887776653 333321
Q ss_pred -----------HHHHHHHHHccccHHHHHHHHHHhH
Q 009424 425 -----------WETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 425 -----------~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|...-.+|.++|+-.||.++++++.
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3334467788888888888888876
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.31 E-value=0.019 Score=57.91 Aligned_cols=142 Identities=10% Similarity=-0.010 Sum_probs=101.8
Q ss_pred CCCchhhHHHHHHHHHhcC-----CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHH
Q 009424 348 PGVTNLGYHAMISSLARIG-----DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG--------NFDKAEAFFNSII 414 (535)
Q Consensus 348 ~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~ 414 (535)
+..+...|...+.+..... +.+.|..+|+++++..+. ....|..+..+|.... ++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3445577888888765433 377899999999887654 4555555544443321 2234444444433
Q ss_pred Hc-CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 415 EE-GGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 415 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.. ....+...|.++.......|++++|...++++. .+.|+...|..+...+...|+.++|.+.+++....++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl------~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI------DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH------HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 32 123355778888777777899999999999999 45688888999999999999999999999999999888
Q ss_pred Chh
Q 009424 494 KEK 496 (535)
Q Consensus 494 ~~~ 496 (535)
.+.
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 654
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.30 E-value=0.022 Score=48.53 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc--hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT--NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
+..+...+...|++++|+..|++.....+.++ ...+..+...+.+.|++++|...+.+..+..+. +...+..+..+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 33444444455555555555555544333322 134455555555566666666666555544322 344444455555
Q ss_pred HHcCChh
Q 009424 398 VKEGNFD 404 (535)
Q Consensus 398 ~~~g~~~ 404 (535)
...|+..
T Consensus 117 ~~~g~~~ 123 (172)
T PRK02603 117 HKRGEKA 123 (172)
T ss_pred HHcCChH
Confidence 5555433
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.30 E-value=0.03 Score=45.71 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.+..-+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|.......+. |...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 3444445666666666666666554433 4455555666666666666666666666655443 5555555666666666
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
+.+.|.+.|+..+
T Consensus 118 ~~~~A~~aF~~Ai 130 (157)
T PRK15363 118 NVCYAIKALKAVV 130 (157)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666665
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.28 E-value=0.033 Score=51.79 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC---CCc--hhhHHHHHHHHH
Q 009424 290 TMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV-GKKEEVYRVWNLYRSVFP---GVT--NLGYHAMISSLA 363 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~ 363 (535)
..|...|++..|-+++..+- ..|-.. |++++|++.|++...... .+. ...+..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 34566666666655555442 233344 566666666665543211 111 134455566666
Q ss_pred hcCCHhhHHHHHHHHHhcCCCC-----CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCC--HhHHHHHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSY-----DPR-IANLMMSWYVKEGNFDKAEAFFNSIIEEG--GKPN--STSWETLAEGHI 433 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~li~~~~ 433 (535)
+.|++++|.++|+++....... +.. .+...+-++...|++..|.+.|++..... +..+ ......|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 7777777777777665433221 111 12222334445667777777777665431 2111 223344455553
Q ss_pred c--cccHHHHHHHHHHhH
Q 009424 434 R--ERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~--~g~~~~A~~~~~~m~ 449 (535)
. ...+++|+.-|+.+.
T Consensus 247 ~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS
T ss_pred hCCHHHHHHHHHHHcccC
Confidence 3 223455555555444
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.26 Score=49.54 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHH
Q 009424 243 RLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271 (535)
Q Consensus 243 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 271 (535)
+-|....-.+.+++...|.-++|.+.|-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 34455555566666666666666655533
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.0088 Score=50.79 Aligned_cols=65 Identities=8% Similarity=-0.112 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV 346 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 346 (535)
...|..+...+...|++++|...|++.......+. ..+|..+...|...|+.++|+..++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455555566666666666666666654322211 225555566666666666666666665553
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.0015 Score=45.69 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=25.9
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+.|++++|.++|+++....+. +...+..+...|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555544333 44445555555555555555555555555
No 177
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0056 Score=52.34 Aligned_cols=34 Identities=12% Similarity=-0.007 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC
Q 009424 438 ILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES 475 (535)
Q Consensus 438 ~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g 475 (535)
-+-|++++++|. ..|+-||..|+..++..+.+.+
T Consensus 119 q~c~i~lL~qME----~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQME----NNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHH----HcCCCCcHHHHHHHHHHhcccc
Confidence 345666666666 6666666666666666665544
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.16 Score=50.91 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=60.6
Q ss_pred CHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-CCCCc--------CcchHHHHHHHHHhcCChh
Q 009424 158 GVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRD-KGYAV--------HSLPYNVMMTLYMKIKEYD 228 (535)
Q Consensus 158 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p--------~~~~~~~li~~~~~~g~~~ 228 (535)
.+++|.+..+.- |....|..+.....+.-.++.|...|-+... .|++. +...-.+=|.+| -|+++
T Consensus 678 gledA~qfiEdn----PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN----PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFE 751 (1189)
T ss_pred chHHHHHHHhcC----CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchh
Confidence 345555554433 4556676666655555556666665554433 12211 000001112222 36777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009424 229 EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLR 306 (535)
Q Consensus 229 ~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 306 (535)
+|.++|-+|-++++ .|..+.+.|++-...++++.--.+..-.--...|+.+...++....+++|.+.|.
T Consensus 752 eaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 752 EAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred Hhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766655532 2444555555554444443211000000012244455544444444444444444
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.0044 Score=55.44 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=99.8
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 439 (535)
.-..+.+++++|...|.++++..+. |.+.|..=..+|++.|.++.|++-.+.....+.. -..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 4467889999999999999987765 7888888899999999999999999888875332 4678999999999999999
Q ss_pred HHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhc-CChh---hHHHHHHHHhcCCCCChh
Q 009424 440 EALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEE-SDMG---SKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~-g~~~---~a~~~~~~~~~~~~~~~~ 496 (535)
+|++.|++.. .+.|+..+|..-|+..... +... .+..-++.....|..|+.
T Consensus 167 ~A~~aykKaL------eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 167 EAIEAYKKAL------ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHhhh------ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999999 6899999988777655432 2222 344444444444543433
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.19 E-value=0.12 Score=46.66 Aligned_cols=174 Identities=9% Similarity=0.034 Sum_probs=98.6
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHh--
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTF---STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS-- 329 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 329 (535)
.+...|++++|.+.|+.+.... +-+...- -.+..+|.+.+++++|...|++..+.-+.-..+-|...+.+.+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3455667777777777766432 2222222 23455666777777777777777664433333344444444331
Q ss_pred c---------------CC---HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH
Q 009424 330 V---------------GK---KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391 (535)
Q Consensus 330 ~---------------g~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 391 (535)
. .+ ..+|+..|+.+.+..|.. .-..+|...+..+... =...--
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S---------------~ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS---------------QYTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC---------------hhHHHHHHHHHHHHHH----HHHHHH
Confidence 0 11 234556666666554432 2233444433333211 001112
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEE--GGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+...|.+.|.+..|..-|+.+.+. +-.........++.+|...|..++|.++.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4567788889999999999888873 223345566778889999999988888776554
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.15 E-value=0.097 Score=45.92 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=91.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
...+...|++++|...|+.+....+... ....-.++.++.+.|++++|...++++....|..+..-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345566777777777777765432211 12344556677777777777777777777666655444444443333221
Q ss_pred CHhhHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSY-----DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 441 (535)
...... .....+ -...+..++.-|-......+|...+..+.+. =...--.+...|.+.|.+..|
T Consensus 92 ~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 92 QIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHH
T ss_pred hCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHH
Confidence 111110 000000 0123344555555555666666655555431 111112355678888888888
Q ss_pred HHHHHHhHHhccCCCCCCCH----HHHHHHHHHHHhcCChhhHH
Q 009424 442 LSCLKGAFAAEGAKSWRPKP----VNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 442 ~~~~~~m~~~~~~~g~~p~~----~~~~~ll~a~~~~g~~~~a~ 481 (535)
..-++.+.+. -|+. .....++.++.+.|..+.+.
T Consensus 161 ~~r~~~v~~~------yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 161 IIRFQYVIEN------YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHH------STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHH------CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888832 3333 35566777888888877444
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.24 Score=46.51 Aligned_cols=111 Identities=15% Similarity=0.073 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYV 398 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 398 (535)
+.+..|.-+...|+...|.++-.+. -.|+..-|-..+.+++..++|++-.++-.. +-.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455555556555554443333 334445555666666666666555544321 113345555666666
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.-.+..
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 666666666555441 11334555566666666655544333
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.12 E-value=0.016 Score=47.31 Aligned_cols=97 Identities=10% Similarity=-0.030 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
..-.+...+...|++++|.++|+-+...++. +..-|-.|...+-..|++++|+..|..+. ... .-|+..+-.+-
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~----~L~-~ddp~~~~~ag 110 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAA----QIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcC-CCCchHHHHHH
Confidence 3344556677899999999999999886555 77788889999999999999999999999 333 23566777888
Q ss_pred HHHHhcCChhhHHHHHHHHhcCC
Q 009424 469 KACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 469 ~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
.++...|+.+.|++.|+..+...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999999888664
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.10 E-value=0.0015 Score=45.21 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=21.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 397 YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+.+.|++++|.+.|++..+..+. +...|..+...+.+.|++++|..+|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444443222 33444444444444444444444444443
No 185
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.028 Score=46.38 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhcc-CCCCCCCHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG-AKSWRPKPVNV 464 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~g~~p~~~~~ 464 (535)
.+...++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|++.|+++.+... +.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556677777888888888888888876554 778888888888888888888888888763322 45888877654
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.045 Score=48.07 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH-----H
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM-----S 395 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~ 395 (535)
+.++..+.-.|.+.-.+..+++..+..+..+......+.+.-.+.|+.+.|...|+...+..-..|....+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34445555555566666666666665555555555566666666666666666666555443333333333322 2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|.-.+++.+|...|.++...+.. |...-|.-.-...-.|+..+|++.+..|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 233345566666666666554332 33333333333334566666666666666
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.18 Score=42.10 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=70.2
Q ss_pred CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHhHHHHH
Q 009424 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-KPNSTSWETL 428 (535)
Q Consensus 350 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l 428 (535)
|+...-..+..++...|+..+|...|++...--+.-|..+.-.+.++....+++.+|...++.+-+... .....+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 344444456666666777777777776665443445666666666666666777777766666665321 0122233445
Q ss_pred HHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 009424 429 AEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
.+.|...|.+.+|...|+.+. ...|+...-...-..+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~------~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAI------SYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHH------HhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 566666677666776676666 34455443333333344445444443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.95 E-value=0.063 Score=42.14 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHc
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY--DPRIANLMMSWYVKE 400 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 400 (535)
.++-..|+.++|+.+|++....|...+. ..+..+.+.+...|++++|..+++......+.. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444555566666666655554444332 234455555566666666666666555432210 111222233344555
Q ss_pred CChhHHHHHHHHHH
Q 009424 401 GNFDKAEAFFNSII 414 (535)
Q Consensus 401 g~~~~A~~~~~~m~ 414 (535)
|+.++|.+.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666554433
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.95 E-value=0.0037 Score=43.81 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc-cHHHHHHHHHHhH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER-RILEALSCLKGAF 449 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 449 (535)
..+|..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555554332 4445555555555555 4555555555554
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.93 E-value=0.0041 Score=43.39 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=42.1
Q ss_pred HHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHH
Q 009424 117 RKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGAL 182 (535)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~l 182 (535)
...|++++|.++++.+.+.. +.+..+...+..+|.+.|++++|.++++++....|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35677888888888887765 4466666677777777777777777777776655554444443
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.068 Score=48.32 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG---NFDKAEAFFNSIIEEGGKPNSTSWETLA 429 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li 429 (535)
..|-.|...|...|+.+.|..-|....+...+ ++..+..+..++.... .-.++..+|+++...+.. |+.+...|.
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lLA 234 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLLA 234 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 34444444444444444444444444433221 3333333333322211 122344444444443222 334444444
Q ss_pred HHHHccccHHHHHHHHHHhH
Q 009424 430 EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+...|++.+|...|+.|.
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 44444444444444444444
No 192
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.90 E-value=0.43 Score=45.60 Aligned_cols=133 Identities=5% Similarity=0.032 Sum_probs=90.5
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHH
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMM 218 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 218 (535)
+.+...+-.||..|...|..++-+++++++... +--..+|..-|++=...+++.....+|.+.....+ +...|...+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 577889999999999999999999999999884 22346899999988888999999999999887643 567788888
Q ss_pred HHHHhcCChh------HHHHHHHHHHH-cCCCCCH-HHHHHH---HHHHhcCCCH------hHHHHHHHHhHh
Q 009424 219 TLYMKIKEYD------EVESMVSEMKE-KGIRLDV-YSYNIW---LSSCGSQGST------EKMEGVFELMKV 274 (535)
Q Consensus 219 ~~~~~~g~~~------~a~~~~~~m~~-~g~~pd~-~~~~~l---l~~~~~~g~~------~~a~~~~~~~~~ 274 (535)
+.-.+.+..- ...+.|+.... .++.|-. ..|+.. +..--..|.| |..+..+.++..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 7665554221 22333333333 4555533 334443 3333345554 455666777663
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.091 Score=41.24 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHH
Q 009424 218 MTLYMKIKEYDEVESMVSEMKEKGIRLD--VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATM 291 (535)
Q Consensus 218 i~~~~~~g~~~~a~~~~~~m~~~g~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~ 291 (535)
..++-..|+.++|+.+|++....|+... ...+-.+-+.+...|++++|..+++...... |+ ......+.-+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHH
Confidence 3455566777777777777777665433 2234445556667777777777777666431 22 1122222334
Q ss_pred HHhcCCHHHHHHHHHHH
Q 009424 292 YIKMGQVEKAEESLRRV 308 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m 308 (535)
+...|+.++|.+.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55667777776666544
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.81 E-value=0.46 Score=44.68 Aligned_cols=124 Identities=13% Similarity=0.166 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
+.+..|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-..+... +-+++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667788899999988877763 48999999999999999999988776442 112367899999999
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
+.|+..+|..+...+ .+..-+.+|.++|++.+|.+.--+.. |......+...+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~ 302 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCP 302 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCC
Confidence 999999999888762 12567889999999999987754433 5555544444443
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.15 Score=44.99 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHH---
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLA--- 429 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--- 429 (535)
...++++..+...|.+.-...++.+.++.....++.....|..+-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34567788888888899999999999988877789999999999999999999999999887654444555555554
Q ss_pred --HHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHH
Q 009424 430 --EGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIG 503 (535)
Q Consensus 430 --~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~ 503 (535)
..|.-++++.+|...+.+..+ . .| |....+.-.-...-.|+...|.+.++.|.+..|.+..+-+.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~----~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILR----M--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred hhhheecccchHHHHHHHhhccc----c--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 335567789999999998882 2 22 22222222222345688999999999999988887654433333
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.03 Score=51.02 Aligned_cols=107 Identities=7% Similarity=-0.020 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN--STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVI 465 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~ 465 (535)
..|...+..+.+.|++++|...|+.+.+..+.-. ...+-.+...|...|++++|...|+.+.+..++.... ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~--~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA--ADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--hHHHH
Confidence 3455555555666788888888888776533211 2455567777778888888888888887322111111 23344
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 466 NFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
.+...+...|+.+.|.++++.+++..+....
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 4455566778888888888888777665543
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.70 E-value=0.012 Score=40.65 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=40.6
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
...+.+.|++++|...|+.+++..+. +...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566777777777777777776644 6677777777777778888887777777654
No 198
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.69 E-value=1 Score=46.99 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=31.8
Q ss_pred HccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCH
Q 009424 118 KFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMR 192 (535)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 192 (535)
+.|+.++|..+++.....+ ..|..+...+-..|...|+.++|..++++.....|+......+..+|++.+++
T Consensus 55 r~gk~~ea~~~Le~~~~~~---~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLK---GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HhcCchhHHHHHhhhccCC---CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333 11444444444444444444444444444444434433344444444444443
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.67 E-value=0.0063 Score=42.62 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=55.5
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcC-ChhhHHHHHHHHhcCCC
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEES-DMGSKEAFVALLRQPGY 492 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~ 492 (535)
+...|..+...+...|++++|+..|.+.. .+.|+. ..|..+-.++...| ++++|.+.+++.++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai------~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI------ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH------HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999 345654 56777777889999 79999999999887543
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.66 E-value=0.31 Score=40.69 Aligned_cols=65 Identities=6% Similarity=-0.111 Sum_probs=30.8
Q ss_pred cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
|++..--.|..+..+.|++.+|...|.+...--+.-|....-.+.++....+++..|...++.+-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 34444444445555555555555555544443333344444444444444555555555444444
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=1 Score=46.04 Aligned_cols=319 Identities=12% Similarity=0.067 Sum_probs=163.0
Q ss_pred hCCCCCCHHHHH-----HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhC---CHhhHHHHHhhCC
Q 009424 99 KGGRSLTKWELC-----RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVH---GVASAEDFFLSLP 170 (535)
Q Consensus 99 ~~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~~ 170 (535)
+-|+..+..-|. .++..+...+.+..|+++-.++-..- .....++.....-+.+.. +-+.+..+=+++.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~---~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE---SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc---ccccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 346776665554 45677778888999999887764332 222567777777776653 2333444444444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC----cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 009424 171 DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYA----VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 171 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
......++|..+....-.+|+++-|..+.+.=...+-. .+..-+...+.-+.+.|+.+-...++-.+.+.- +.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 32245678888888888899999999888753332210 122335556666777788877777776665541 11
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHH----hcccCCCcchHH
Q 009424 247 YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL-RRVE----SRITGRDRVPYH 321 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----~~g~~~~~~~~~ 321 (535)
..|.-.+ .+...|..+|.+..++.+- . .+-+.|-...+...+-.+. +... ..|..|+ ..
T Consensus 579 s~l~~~l------~~~p~a~~lY~~~~r~~~~----~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk 642 (829)
T KOG2280|consen 579 SSLFMTL------RNQPLALSLYRQFMRHQDR----A---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LK 642 (829)
T ss_pred HHHHHHH------HhchhhhHHHHHHHHhhch----h---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HH
Confidence 1121111 2333444555444432111 1 1111122222211111111 1100 0111122 22
Q ss_pred HHHHHHHhcCC----------HHHHHHHHHHHHh-hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHH
Q 009424 322 YLLSLYGSVGK----------KEEVYRVWNLYRS-VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA 390 (535)
Q Consensus 322 ~li~~~~~~g~----------~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 390 (535)
.....+++... ..+-+.+.+.+.. .+..-...+.+-.+.-+...|+..+|.++-.+.. -||...|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 22233333322 1111222222222 1222222445555556666677777766665532 2466666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-.-+.+++..+++++-+++-+.++ .+.-|.-.+.+|.+.|+.++|.+++-+..
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 666667777777666655544432 24455566667777777777777666554
No 202
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.38 Score=45.42 Aligned_cols=85 Identities=12% Similarity=-0.056 Sum_probs=43.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCC
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRL-DVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~g~ 261 (535)
-..+.+..++.+|+..+....+.+ +-++.-|..-...+...|+++++.--.+.-.+. +| ......-.-+++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 345556666777777776666654 223444555555566666666666555444332 11 11223333344444455
Q ss_pred HhHHHHHHH
Q 009424 262 TEKMEGVFE 270 (535)
Q Consensus 262 ~~~a~~~~~ 270 (535)
..+|.+.++
T Consensus 133 ~i~A~~~~~ 141 (486)
T KOG0550|consen 133 LIEAEEKLK 141 (486)
T ss_pred HHHHHHHhh
Confidence 555555444
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.60 E-value=0.45 Score=41.73 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=84.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCcC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 009424 183 LNAYVRARMRGNAELLIDKMRDKGYAVH----SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS 258 (535)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 258 (535)
...+.+.|++++|.+.|+++...- |+ ....-.++.++.+.|++++|...++++.+.-..-...-+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344567788888888888877642 21 223445667777888888888888887765322112222222222221
Q ss_pred CCC-------------HhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 259 QGS-------------TEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 259 ~g~-------------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
... ..+|.. .+..+|.-|=......+|...+..+.+.-- ..--.+..
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~----------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la----~~e~~ia~ 149 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIE----------------EFEELIKRYPNSEYAEEAKKRLAELRNRLA----EHELYIAR 149 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHH----------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHH----------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 111 112222 233344444444555555554444432100 00112445
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhH
Q 009424 326 LYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGM 371 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a 371 (535)
-|.+.|.+..|..-++.+.+..+.... .....++.++.+.|..+.+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 677777777777777777776555443 3455666667777666533
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.27 Score=44.57 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=85.8
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc---cHHHHHHHHHHhHHhccCCC
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER---RILEALSCLKGAFAAEGAKS 456 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~g 456 (535)
..++. |...|-.|...|...|+.+.|..-|.+..+...+ |...+..+..++.... ...++.++|+++. .
T Consensus 150 ~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al------~ 221 (287)
T COG4235 150 QQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQAL------A 221 (287)
T ss_pred HhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH------h
Confidence 34444 8999999999999999999999999999885333 6666777776655432 4568999999999 5
Q ss_pred CCCCHHHHH-HHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 457 WRPKPVNVI-NFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 457 ~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
..|+..+-. .+-..+...|++.+|...|+.|.+..+..+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 677666544 4456888999999999999999998876554
No 205
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.54 E-value=0.02 Score=50.68 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=72.0
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC----------
Q 009424 161 SAEDFFLSLPDTLKDRRVYGALLNAYVRA-----RMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK---------- 225 (535)
Q Consensus 161 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------- 225 (535)
..++.|.......+|-.+|-+.+..+... +.++=....++.|.+.|+..|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 44566666664447888888888777654 566767777888999999999999999988765432
Q ss_pred ------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 226 ------EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 226 ------~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
+-+-++.++++|...|+.||..+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224466777777777777777777777777766554
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.53 E-value=0.027 Score=44.68 Aligned_cols=52 Identities=6% Similarity=-0.044 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 009424 241 GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMY 292 (535)
Q Consensus 241 g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 292 (535)
...|+..+..+++.+|+..|++..|.++.+...+..+++.+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3557777777777777777777777777777776666666667777666543
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.51 E-value=0.017 Score=40.95 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555554333 44444445555555555555555555555
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.48 E-value=0.21 Score=41.13 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-----HcCCCCCHhHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII-----EEGGKPNSTSW 425 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~ 425 (535)
....++..+...|+++.|..+...+....+. |...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556777788899999999999998887655 88899999999999999999999998775 35888887664
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=1.4 Score=45.04 Aligned_cols=307 Identities=12% Similarity=0.099 Sum_probs=179.0
Q ss_pred HHHHHHHhhCCHhhHHHHHhhCCCCCCC---HHHHHHHHHHHHHcCCH---hHHHHHHHHHHHCCCCcCcchHHHHHHHH
Q 009424 148 IQLDLIAKVHGVASAEDFFLSLPDTLKD---RRVYGALLNAYVRARMR---GNAELLIDKMRDKGYAVHSLPYNVMMTLY 221 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 221 (535)
.+++-+...+.+..|.++-..+.. |. ..+|.....-+.+..+. +-+..+-+++... . -+..+|..+..-.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~--p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNL--PESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRA 517 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCC--ccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHH
Confidence 356677777888888888877766 43 56677777777766432 2233333333332 2 3467788888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 222 MKIKEYDEVESMVSEMKEKGIR----LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ 297 (535)
Q Consensus 222 ~~~g~~~~a~~~~~~m~~~g~~----pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 297 (535)
...|+.+-|..+++.=.+.+-. .+..-+...+.-+...|+.+....++-.+..+ .+...+...+ .+
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~----~~~s~l~~~l------~~ 587 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK----LNRSSLFMTL------RN 587 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH----HHHHHHHHHH------Hh
Confidence 8899999998887643322211 12223444555666777777777777666642 1222222111 23
Q ss_pred HHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH----H-hhCCCCchhhHHHHHHHHHhcCCHhhH-
Q 009424 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY----R-SVFPGVTNLGYHAMISSLARIGDIEGM- 371 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~-~~~~~~~~~~~~~ll~~~~~~g~~~~a- 371 (535)
.-.|..+|.+..+.. |.. .+-+.|-+..+..++-.+.-+- . ..+..|+ .....+++++.....-.
T Consensus 588 ~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred chhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 445566666554321 111 1122232333322222111111 0 1122222 23444455554442211
Q ss_pred ---------HHHHHHHH-hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHH
Q 009424 372 ---------EKIFEEWL-SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 372 ---------~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 441 (535)
.++.+.+. +.|....-.+.+--+.-+...|+-.+|.++-.+.+ .||-..|..-+.+++..++|++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 11222221 12323334455556667778899999998877665 47999999999999999999998
Q ss_pred HHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 442 LSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 442 ~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
.++-+.++ .+.-|..+..+|.+.|+.++|.+++.+....-
T Consensus 735 ekfAkskk----------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 735 EKFAKSKK----------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHHhccC----------CCCCchhHHHHHHhcccHHHHhhhhhccCChH
Confidence 87777665 25678888999999999999999999987654
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.38 E-value=0.89 Score=42.72 Aligned_cols=300 Identities=14% Similarity=0.055 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHH--cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHH--HHH
Q 009424 177 RVYGALLNAYVR--ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLY--MKIKEYDEVESMVSEMKEKGIRLDVY--SYN 250 (535)
Q Consensus 177 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~pd~~--~~~ 250 (535)
.-|.+|-.++.. .|+-..|+++-.+-.+. +.-|....-.++.+- .-.|+++.|.+-|+-|... |... -..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 345666655544 47778888877665432 233455555555443 3568999999999999753 2211 122
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-ccCCCcc--hHHHHHHHH
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR-ITGRDRV--PYHYLLSLY 327 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~--~~~~li~~~ 327 (535)
.|.-..-+.|+.+.|+++-+..-... +.-...+.+.+...+..|+++.|+++.+.-+.. -+.++.. .-..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 23333456888888888888776432 334567888999999999999999999876543 2445543 222333322
Q ss_pred Hh---cCCHHHHHHHHHHHHhhCCCCchh-hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 328 GS---VGKKEEVYRVWNLYRSVFPGVTNL-GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 328 ~~---~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
+. ..+...|...-.+..+ ..|+.. .-.....++.+.|++.++-.+++.+-+..+.|++ +. +..+.+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd- 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD- 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC-
Confidence 21 2345566665555544 344432 2234557889999999999999999777665554 22 223344444
Q ss_pred hHHHHHHHHHHH-cCCCC-CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH-HhcCChhhH
Q 009424 404 DKAEAFFNSIIE-EGGKP-NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC-EEESDMGSK 480 (535)
Q Consensus 404 ~~A~~~~~~m~~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~-~~~g~~~~a 480 (535)
.+..-+++... ..++| +..+--.+..+-...|++..|..--+... ...|....|..+-..- ...||-.++
T Consensus 310 -ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~------r~~pres~~lLlAdIeeAetGDqg~v 382 (531)
T COG3898 310 -TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA------REAPRESAYLLLADIEEAETGDQGKV 382 (531)
T ss_pred -cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh------hhCchhhHHHHHHHHHhhccCchHHH
Confidence 44444444433 22344 46666677788888899988887777776 5678888887777654 455999999
Q ss_pred HHHHHHHhcCCCCChh
Q 009424 481 EAFVALLRQPGYRKEK 496 (535)
Q Consensus 481 ~~~~~~~~~~~~~~~~ 496 (535)
++.+.+.++.--+|..
T Consensus 383 R~wlAqav~APrdPaW 398 (531)
T COG3898 383 RQWLAQAVKAPRDPAW 398 (531)
T ss_pred HHHHHHHhcCCCCCcc
Confidence 9999998887655544
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.36 E-value=0.088 Score=47.98 Aligned_cols=94 Identities=11% Similarity=0.157 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc----chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDR----VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAM 358 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l 358 (535)
|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|+..|+.+....+..+. ..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333334455555555555544322 221 13333444444455555555555554443332111 122223
Q ss_pred HHHHHhcCCHhhHHHHHHHHHh
Q 009424 359 ISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~ 380 (535)
...+...|+.+.|..+++.+++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.31 E-value=0.37 Score=48.06 Aligned_cols=223 Identities=14% Similarity=0.118 Sum_probs=122.2
Q ss_pred HHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 009424 214 YNVMMTLYMKIKE--YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291 (535)
Q Consensus 214 ~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 291 (535)
++..=.+|.+-.+ +-+-+.-+++|+++|-.||.... ...|+-.|++.+|-++|.+--. . |-.+.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~----e------nRAlEm 667 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGH----E------NRALEM 667 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCc----h------hhHHHH
Confidence 3444445544443 23444456778888877887643 4456778888888888865321 1 222334
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCchhhH---------HHHHH
Q 009424 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS--VFPGVTNLGY---------HAMIS 360 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~---------~~ll~ 360 (535)
|.....++.|.+++. .|..++-..+.++--+ ...+-+...- .-.+.
T Consensus 668 yTDlRMFD~aQE~~~-----------------------~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLG-----------------------SGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIE 724 (1081)
T ss_pred HHHHHHHHHHHHHhh-----------------------cCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhh
Confidence 444333444433332 2222222222111100 0011010000 01122
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
.+...|-.+.+.++-.++-+. +..+...+..-+.+...+.-|-++|..|-+. ..++......++|++
T Consensus 725 i~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~e 791 (1081)
T KOG1538|consen 725 ICGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDE 791 (1081)
T ss_pred hhhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchH
Confidence 233334444444443332211 3334444444555667788899999887542 256778889999999
Q ss_pred HHHHHHHhHHhccCCCCCCCHH-----------HHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 441 ALSCLKGAFAAEGAKSWRPKPV-----------NVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p~~~-----------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
|..+-+... .+.||.. -|.-.-.|+.+.|+..+|.++++++....
T Consensus 792 AFalAe~hP------e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 792 AFALAEKHP------EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hHhhhhhCc------cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 999998877 4555532 35555668999999999999999986543
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.30 E-value=0.071 Score=42.30 Aligned_cols=101 Identities=12% Similarity=-0.007 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 352 NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 352 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
..++..++.++++.|+++....+++.. .|+.++...- .+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 456777777777777777777777654 3433222100 000 11123456788888888888
Q ss_pred HHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC
Q 009424 432 HIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES 475 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g 475 (535)
|+.+|++..|+++.+...+ ..+++-+..+|..|+.-+...-
T Consensus 62 f~~n~~i~~al~~vd~fs~---~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSR---KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHhcccHHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHhc
Confidence 8888888888888888775 5567777888888887554443
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.14 E-value=1.3 Score=42.25 Aligned_cols=127 Identities=17% Similarity=0.069 Sum_probs=65.2
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHcCCCCCHhH---HHHHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK---------EGNFDKAEAFFNSIIEEGGKPNSTS---WETLAEGH 432 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~ 432 (535)
.|+.++|++++..+....-.+++.+|..+...|-. ....+.|...|.+.-+. .||..+ +.+|+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 55566666665554444444455555554444422 11255666666655442 233322 22222222
Q ss_pred Hccc-cHHHHHHHH---HHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 433 IRER-RILEALSCL---KGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 433 ~~~g-~~~~A~~~~---~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.... .-.+..++- ....-..+..+-..|...+.+++.++.-.|+++.|.+..++|.+..++
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2111 111222222 222210112223456667788889999999999999999999988643
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.05 E-value=1.3 Score=41.61 Aligned_cols=281 Identities=11% Similarity=0.033 Sum_probs=156.6
Q ss_pred HccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHH--HHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHH----HHHHcCC
Q 009424 118 KFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL--IAKVHGVASAEDFFLSLPDTLKDRRVYGALLN----AYVRARM 191 (535)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~----~~~~~g~ 191 (535)
..|+-..|.++-.+..+. +..|..-...++.+ -.-.|+.+.|++-|+.|.+ |..+-..=+. .--+.|+
T Consensus 96 gAGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhccc
Confidence 456666776665554432 23333333333332 2345788888888888876 4444332222 2245677
Q ss_pred HhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHhc---CCCHhHH
Q 009424 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKG-IRLDVYS--YNIWLSSCGS---QGSTEKM 265 (535)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~pd~~~--~~~ll~~~~~---~g~~~~a 265 (535)
.+.|+..-++.-..- +-=...+.+.+...+..|+++.|+++.+.-+... +.+|+.- -..|+.+-+. ..+...|
T Consensus 170 reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 777777766665442 1113456777888888888888888887665543 3444322 2233333221 2345555
Q ss_pred HHHHHHhHhCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 266 EGVFELMKVDKAVNPNWTTF-STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 344 (535)
+..-.+..+ +.||..-- -.-...+.+.|+..++-.+++.+-+..+.|+. +.. -.+.+.|+ .++.-+++.+
T Consensus 249 r~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~l--Y~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 249 RDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALL--YVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHH--HHHhcCCC--cHHHHHHHHH
Confidence 555544443 35554322 22345677888888888888888765444432 221 22334444 3333333332
Q ss_pred h-hCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHc
Q 009424 345 S-VFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK-EGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 345 ~-~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 416 (535)
. ...+|+. .+...+..+-...|++..|..--+...+ ..|....|..|.+.-.- .|+-.++...+.+....
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2 1133433 4555666777778888877766665543 35667777777665544 48888888887777654
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.85 E-value=1.7 Score=41.58 Aligned_cols=77 Identities=18% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAV--NPNWTTFSTMATMYIK---MGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
.++-+|....+++...++.+.+..-..+ ..+..+--...-++.+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334566666666666666666542111 1111122223334444 6666666666666444444455555555544
Q ss_pred HH
Q 009424 326 LY 327 (535)
Q Consensus 326 ~~ 327 (535)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=95.84 E-value=0.85 Score=37.65 Aligned_cols=87 Identities=16% Similarity=0.076 Sum_probs=58.0
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 397 YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESD 476 (535)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~ 476 (535)
+-..|++++|..+|.-+.-.++. |..-|..|...+-..+++++|+..|..+. ..+ .-|+..+-..-..+...|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~----~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAF----TLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hcc-cCCCCccchHHHHHHHhCC
Confidence 44577888888887777665444 55566667777777777888888777776 222 1234444455556677778
Q ss_pred hhhHHHHHHHHhc
Q 009424 477 MGSKEAFVALLRQ 489 (535)
Q Consensus 477 ~~~a~~~~~~~~~ 489 (535)
.+.|+..|+..++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777776
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.84 E-value=0.071 Score=37.63 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 240 (535)
.|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666553 334555555666666666666666666666654
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.83 E-value=0.019 Score=41.38 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCC-CC-HhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEE----GGK-PN-STSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+++.+...|...|++++|+..|++..+. |.. |+ ..++..+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666666666666666666665532 111 11 3345555566666666666666666554
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=2.9 Score=43.50 Aligned_cols=61 Identities=7% Similarity=-0.089 Sum_probs=38.2
Q ss_pred HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhh----HHHHHHHHhcCCCCChh
Q 009424 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGS----KEAFVALLRQPGYRKEK 496 (535)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~~~ 496 (535)
++..+.+..+.+++..+.+..- +. ++..|..+++.+.+.+.++. ..++++.+......|+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g----~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl 775 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG----KE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPL 775 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC----cc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHH
Confidence 5566677777777777776655 22 67788888888887775443 44444454444444443
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.74 E-value=0.87 Score=37.08 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM 295 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 295 (535)
.++..+.+.+.......+++.+.+. + ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 3444444444455555555554432 1 23444455555555443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.60 E-value=0.075 Score=38.13 Aligned_cols=61 Identities=15% Similarity=0.365 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcC--CC---CC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVK--SS---YD-PRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
+++.+...|...|++++|+..+++..+.. .. |+ ..+++.+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555566666666666666666555321 11 11 3344555556666666666666665544
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.53 E-value=0.24 Score=47.86 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP--RIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
..++.+..+|.+.|++++|...|++.++..+.... ..|..+..+|.+.|+.++|+..+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555666666666666666655544333111 2355555666666666666666665554
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.52 E-value=0.51 Score=44.51 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=32.9
Q ss_pred HHHHccChHHHHHHHHHHHhcC-CCcccCHhHHHHHHHHHHhhCCHhhHHHHH
Q 009424 115 ELRKFRRYKHALEVYDWMNNRG-ERFRLSASDAAIQLDLIAKVHGVASAEDFF 166 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 166 (535)
.+++.|+...+..+|+..++.| ..+..-+..|..|.++|.-.+++++|.++.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 4567777777777777777776 112222345555666666667777777655
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.50 E-value=0.92 Score=36.93 Aligned_cols=85 Identities=7% Similarity=0.093 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 009424 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ 259 (535)
Q Consensus 180 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 259 (535)
..+|..+.+.+........++.+...+ ..+....|.++..|++.. ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555566666666666666555 245556666666666543 2233333331 11223333455555555
Q ss_pred CCHhHHHHHHHHh
Q 009424 260 GSTEKMEGVFELM 272 (535)
Q Consensus 260 g~~~~a~~~~~~~ 272 (535)
+-++++.-++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.45 E-value=0.96 Score=35.54 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=74.0
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchH---HHHHHHHHhcCCH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY---HYLLSLYGSVGKK 333 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~ 333 (535)
.-.|.++++.++..+.... .+..-+|.+|--....-+-+-..++++.+ |--.|.... ..++.+|+..|.
T Consensus 13 ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc-
Confidence 4467888888888887753 34444454443333333333334444433 333444332 233444444332
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
+...+...++.+...|.-++-.+++..+.+ .-.+++...-.+..+|.+.|+..++.+++.+.
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 223445667777788888888888887765 33567777778888888888888888888877
Q ss_pred HHcCCC
Q 009424 414 IEEGGK 419 (535)
Q Consensus 414 ~~~~~~ 419 (535)
-++|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 776654
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.40 E-value=1.8 Score=38.48 Aligned_cols=179 Identities=11% Similarity=0.099 Sum_probs=103.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcccC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC--
Q 009424 292 YIKMGQVEKAEESLRRVESRITG--RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD-- 367 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-- 367 (535)
-.+.|++++|.+.|+.+..+-+- -...+.-.++-++.+.++.++|+..+++.....|..+..-|..-|.+++..-.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 45678888888888888754221 11224445567778888899999999888887777777777777777663321
Q ss_pred -----HhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhH-H-HHHHHHHHccccHHH
Q 009424 368 -----IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTS-W-ETLAEGHIRERRILE 440 (535)
Q Consensus 368 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~-~~li~~~~~~g~~~~ 440 (535)
...+.+-+..+ ..+|.-|=...-..+|..-...+.. ... + -.+.+-|.+.|.+..
T Consensus 124 ~~~rDq~~~~~A~~~f------------~~~i~ryPnS~Ya~dA~~~i~~~~d------~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 124 DVTRDQSAARAAFAAF------------KELVQRYPNSRYAPDAKARIVKLND------ALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ccccCHHHHHHHHHHH------------HHHHHHCCCCcchhhHHHHHHHHHH------HHHHHHHHHHHHHHHhcChHH
Confidence 11122222211 1122222222222223322222221 111 1 134566888888888
Q ss_pred HHHHHHHhHHhccCCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 441 ALSCLKGAFAAEGAKSWRPKP---VNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
|..-+++|.+ . ..-.. ..+-.+..++...|..++|...-+-+...-+.
T Consensus 186 A~nR~~~v~e----~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 186 AINRFEEVLE----N-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHh----c-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 8888888883 2 22222 24455566888888888888877666554443
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.32 E-value=2.9 Score=40.31 Aligned_cols=390 Identities=11% Similarity=0.056 Sum_probs=187.8
Q ss_pred ccCCCCccHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh
Q 009424 82 LMDNPQLGSASVLNDWEKGGRSLTKW------ELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK 155 (535)
Q Consensus 82 ~~g~~~~~a~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~ 155 (535)
+.++.. +|..+|.+..+. +.-+++ .-+.+++|+.. .+++..........+.. +......-...-...+
T Consensus 18 kq~~~~-esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 18 KQKKFQ-ESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---GKSAYLPLFKALVAYK 91 (549)
T ss_pred HHhhhh-HHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHH
Confidence 457788 888888888654 222322 23466677664 34555555555555443 2222222222223456
Q ss_pred hCCHhhHHHHHhhCCCC-----C-----------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC----cCcchHH
Q 009424 156 VHGVASAEDFFLSLPDT-----L-----------KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYA----VHSLPYN 215 (535)
Q Consensus 156 ~g~~~~A~~~f~~~~~~-----~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~ 215 (535)
.+.+.+|.+.|..-.+. + +|-+.=+..+..+.+.|++.+++.++++|..+=++ =+..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888877654332 1 12223356677788899999999999888765333 5777888
Q ss_pred HHHHHHHhcC--------C-------hhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcC--CCHhHHHHHHHHh
Q 009424 216 VMMTLYMKIK--------E-------YDEVESMVSEMKEK------GIRLDVYSYNIWLSSCGSQ--GSTEKMEGVFELM 272 (535)
Q Consensus 216 ~li~~~~~~g--------~-------~~~a~~~~~~m~~~------g~~pd~~~~~~ll~~~~~~--g~~~~a~~~~~~~ 272 (535)
.++-.+++.= . ++.++-...+|... .+.|-...+..++....-. ..+.--.+++...
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7655554421 1 12222222222221 1233333333333332211 1122222333333
Q ss_pred HhCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcccC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 009424 273 KVDKAVNPNWT-TFSTMATMYIKMGQVEKAEESLRRVESRITG----RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF 347 (535)
Q Consensus 273 ~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 347 (535)
. +.-+.|+.. +...|+.-+.+ +.+++..+-+.+....+. .=..+|..++....+.++..+|-+.+.-++...
T Consensus 252 e-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 252 E-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred H-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 2 122344322 23333333333 334443333333221111 112345555555566666655555555444322
Q ss_pred CCCc------------------------------------------h-hhHHHH---HHHHHhcCC-HhhHHHHHHHHHh
Q 009424 348 PGVT------------------------------------------N-LGYHAM---ISSLARIGD-IEGMEKIFEEWLS 380 (535)
Q Consensus 348 ~~~~------------------------------------------~-~~~~~l---l~~~~~~g~-~~~a~~~~~~~~~ 380 (535)
+... . ....-+ ..-+-+.|. -++|..+++.+.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 2211 1 000011 111222333 5556666665554
Q ss_pred cCCCCCHHHHHHHH----HHHHHc---CChhHHHHHHHHHHHcCCCCCHh----HHHHHHHH--HHccccHHHHHHHHHH
Q 009424 381 VKSSYDPRIANLMM----SWYVKE---GNFDKAEAFFNSIIEEGGKPNST----SWETLAEG--HIRERRILEALSCLKG 447 (535)
Q Consensus 381 ~~~~~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~--~~~~g~~~~A~~~~~~ 447 (535)
-.. .|...-|.+. .+|... ..+.+-.++-+-+.+.|+.|-.+ .-|.+.++ +..+|++.++.-.-..
T Consensus 409 ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 321 1333333322 222221 22223333333334556655322 23333332 4466788887766666
Q ss_pred hHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 448 AFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 448 m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
.. .+.|++.+|..+--......++++|..++..+
T Consensus 488 L~------~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 488 LT------KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH------HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55 57788888877766667777888888887654
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=95.23 E-value=0.44 Score=39.27 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=39.7
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
..|++++|..+|..+...++. +..-|..|..++-..+++++|...|......+.. |...+-.....|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence 445555555555544443332 3444444444454555555555555444333221 33333334445555555555555
Q ss_pred HHHHhH
Q 009424 444 CLKGAF 449 (535)
Q Consensus 444 ~~~~m~ 449 (535)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 555555
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.14 E-value=0.17 Score=48.83 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 422 STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV----NVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
...|+.+..+|.+.|++++|+..|++.. .+.|+.. +|..+..+|...|+.++|.+.+++.++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL------eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL------ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555 2344432 2444555555555555555555555443
No 231
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.05 E-value=0.26 Score=44.75 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHH-hccCCCCCCCHHHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA-AEGAKSWRPKPVNVI 465 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~g~~p~~~~~~ 465 (535)
..++..++..+..+|+.+.+...++++....+. +...|..+|.+|.+.|+...|+..|+++.+ ...+.|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345667788888888888888888888886555 788888899999999988888888888874 233678888877776
Q ss_pred HHHHH
Q 009424 466 NFFKA 470 (535)
Q Consensus 466 ~ll~a 470 (535)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.00 E-value=1.4 Score=44.22 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=71.8
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHc--C-CCCCHhHHHHHHHHHHccccHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANL-MMSWYVKEGNFDKAEAFFNSIIEE--G-GKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~--~-~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
....+.|.+++..+.+.- |+...|.. -...+...|++++|.+.|++.... . .+.....+--+...+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 345677788888776543 45444433 345566678888888888865431 0 11233445556666777888899
Q ss_pred HHHHHHHhHHhccCCCCCCCHHHHHHHHHHH-HhcCCh-------hhHHHHHHHHh
Q 009424 441 ALSCLKGAFAAEGAKSWRPKPVNVINFFKAC-EEESDM-------GSKEAFVALLR 488 (535)
Q Consensus 441 A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~-~~~g~~-------~~a~~~~~~~~ 488 (535)
|.+.|..+.+ ...+ +..+|..+..+| ...|+. ++|.+++.+.-
T Consensus 324 A~~~f~~L~~---~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLK---ESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHh---cccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9888888883 2222 345555555544 345666 77777777663
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.99 E-value=1.8 Score=43.38 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHH-----HHHHHHHHHHh----cCCHHHH
Q 009424 231 ESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWT-----TFSTMATMYIK----MGQVEKA 301 (535)
Q Consensus 231 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~----~g~~~~A 301 (535)
.-+|.-+... ++|. +..+++..+-.||-+.+.+.+....+..++..... .|..++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3444444443 3332 34455666677888888888877765444432222 23333333322 3456677
Q ss_pred HHHHHHHHhcccCCCcchHHHHH-HHHHhcCCHHHHHHHHHHHHhhC---CCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 302 EESLRRVESRITGRDRVPYHYLL-SLYGSVGKKEEVYRVWNLYRSVF---PGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
.++++.+.++ -|+...|...- +.+...|++++|++.|++..... .......+--+.-.+.-..++++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 7777777653 46666655442 45556677777777777543211 111222333444445556666666666666
Q ss_pred HHhcCCCCCHHHHHHHH-HHHHHcCCh-------hHHHHHHHHHH
Q 009424 378 WLSVKSSYDPRIANLMM-SWYVKEGNF-------DKAEAFFNSII 414 (535)
Q Consensus 378 ~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~ 414 (535)
+.+..-. +..+|.-+. .++...|+. ++|.++|.+..
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6553321 233333222 223334555 55555555544
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=94.96 E-value=1.2 Score=43.22 Aligned_cols=98 Identities=6% Similarity=-0.127 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHHHHhcCChhhHH
Q 009424 403 FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKACEEESDMGSKE 481 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~ 481 (535)
..+|.++.++..+.+.. |......+..+....++.+.|..+|+++. .+.||.. +|...-..+...|+.++|.
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~------~L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAK------IHSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHh------hcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555554443 55555555555556666666666666666 4556543 3333334455566666666
Q ss_pred HHHHHHhcCCCCChh--hHHHHHHHhHh
Q 009424 482 AFVALLRQPGYRKEK--DYMSLIGLTDE 507 (535)
Q Consensus 482 ~~~~~~~~~~~~~~~--~~~~L~~~y~~ 507 (535)
+.+++..+..|..-. .....+++|..
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~~~~~~ 420 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECVDMYVP 420 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHcC
Confidence 666666666555433 33455555543
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.86 E-value=2.6 Score=37.20 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKS--SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 438 (535)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34444555555555554432111 0112222222333444555555555555555421111234445555555555555
Q ss_pred HHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 009424 439 LEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
+.|...+.... ...|+ ...+..+...+...+..+.+...+....+..+
T Consensus 219 ~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 219 EEALEYYEKAL------ELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHH------hhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 55655555555 22232 22233333333344445555555555554443
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.84 E-value=0.46 Score=37.16 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=47.6
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC
Q 009424 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES 475 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g 475 (535)
+.+..|+++.|++.|.+....-++ +...||.-..++.-+|+.++|++=++++.++.+..+ +.--..|..=-..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-rtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-RTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHhC
Confidence 344555666666666555543222 455566666666666666666666666553221110 001112222223455566
Q ss_pred ChhhHHHHHHHHhcCCCC
Q 009424 476 DMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~ 493 (535)
+.+.|+.-|+..-+.|-.
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 666666666666555543
No 237
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.73 E-value=2.1 Score=35.69 Aligned_cols=134 Identities=9% Similarity=0.028 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhh-CCHhhHHHHHhhC
Q 009424 91 ASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKV-HGVASAEDFFLSL 169 (535)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~~ 169 (535)
++..+.+.+.|+.|+...+..+++.+.+.|.+..-.++.. .+. ++.+..+...+++.-.+. .-..-|.+++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~V-i~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHV-IPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcc-cCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 3455566667888888888888888888887665555443 330 233333333332222111 0122333333333
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009424 170 PDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239 (535)
Q Consensus 170 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 239 (535)
.. .+..++..+...|++-+|+++.+..... +...-..++.+..+.++...-..+|+-..+
T Consensus 89 ~~------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 GT------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 3444555555666666666665554222 222334455555555554444444444443
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.71 E-value=0.8 Score=45.29 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHcCCHhHHHHHHH-HHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH
Q 009424 187 VRARMRGNAELLID-KMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 187 ~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 265 (535)
.-.|+++++.++.+ .-.-..++ ..-.+.+++.+-+.|..+.|+++-..-. .-.....++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 34566666666554 11111121 2335666666666666666666543221 123444566666666
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 266 EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
.++-.+ ..+...|..|.+...+.|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.+....
T Consensus 338 ~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 338 LEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 654422 22455666666666666666666666665422 44555555566665555555444433
Q ss_pred hCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 346 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
.+ -++....++.-.|+.++..+++.
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 21 13344444445555555555554
No 239
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.69 E-value=1.7 Score=41.28 Aligned_cols=257 Identities=11% Similarity=0.032 Sum_probs=148.4
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcC----cchHHHHHHHHHhcCChhHHHHHHHHH--HHc--CCC-CCHHHHHHHHHH
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVH----SLPYNVMMTLYMKIKEYDEVESMVSEM--KEK--GIR-LDVYSYNIWLSS 255 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~--g~~-pd~~~~~~ll~~ 255 (535)
-+++.|+....+.+|+...+.|- -| ...|..|..+|.-.+++++|++++..= +.+ |-+ -...+...|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 36788888889999998888772 12 234556666777777888888875421 111 100 001111112222
Q ss_pred HhcCCCHhHHHH-----------HHHHhHhCCCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 009424 256 CGSQGSTEKMEG-----------VFELMKVDKAVNPNWTTFSTMATMYIKMGQ--------------------VEKAEES 304 (535)
Q Consensus 256 ~~~~g~~~~a~~-----------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~ 304 (535)
+--.|.+++|.- +=+.+.+ ...+-.|.+.|...|+ ++.|.++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e-------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLE-------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhh-------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 223344444433 2222221 2234445555654442 2344444
Q ss_pred HHHHHh----cccC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHH----hhCCCCch-hhHHHHHHHHHhcCCHhhHHHH
Q 009424 305 LRRVES----RITG-RDRVPYHYLLSLYGSVGKKEEVYRVWNLYR----SVFPGVTN-LGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 305 ~~~m~~----~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
|.+=.+ .|-. .--..|..+-..|.-.|+++.|+...+.-. +.|..... ..+..+.+++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 443211 1100 112244555555666788999887766432 22322222 5677888889999999999988
Q ss_pred HHHHHh----cCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----c-CCCCCHhHHHHHHHHHHccccHHHHHHH
Q 009424 375 FEEWLS----VKSS-YDPRIANLMMSWYVKEGNFDKAEAFFNSIIE----E-GGKPNSTSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 375 ~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
|+.... .|-. ....+.-+|.+.|.-..++++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 876542 2211 2334556678888888888999888865432 1 1222567788999999999999999988
Q ss_pred HHHhH
Q 009424 445 LKGAF 449 (535)
Q Consensus 445 ~~~m~ 449 (535)
.....
T Consensus 338 ae~hl 342 (639)
T KOG1130|consen 338 AELHL 342 (639)
T ss_pred HHHHH
Confidence 87766
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=2.9 Score=36.84 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=30.8
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 009424 425 WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFV 484 (535)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 484 (535)
|...|-.|....++..|.+.++.--+.. ...-.-+..+...||.+|- .||.|++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip-~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIP-AFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCc-cccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 4444555555667777777777644100 1111223456666666654 36666666554
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.63 E-value=4.5 Score=39.00 Aligned_cols=67 Identities=1% Similarity=0.066 Sum_probs=50.7
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcC
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRG 136 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 136 (535)
.|+.+|-.||.-|...|..+ +..+++++|.+- .+.-+..|..-+++-....++.....+|.+.++..
T Consensus 40 tnI~S~fqLiq~~~tq~s~~-~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 40 TNILSYFQLIQYLETQESMD-AEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHH-HHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 56789999999999999999 999999999653 22234455566666666677888888888777655
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=3.5 Score=37.55 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=93.1
Q ss_pred HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCH--HHHHHHHHHHHH
Q 009424 111 RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDR--RVYGALLNAYVR 188 (535)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~ 188 (535)
.-.......|++.+|..+|....... +-+......+..+|...|+++.|..+++.++....+. ....+-|..+.+
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 34456677899999999999888875 3346667778888999999999999999988752222 122233455555
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCC
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI-RLDVYSYNIWLSSCGSQG 260 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~~~~~~ll~~~~~~g 260 (535)
.....+...+-.+.-.. +-|...-..+...+...|+.++|++.+-.+.+++. .-|...-..++..+.-.|
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55555555555554443 22555566677777888888888877766665421 124444555555554444
No 243
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.56 E-value=4 Score=38.04 Aligned_cols=132 Identities=11% Similarity=0.158 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcccCCCcchHHHHHHHHHh--cC----CHHHHHHHHHHHHhhCCCCc---hhhHHHHHHHHHhcCC-
Q 009424 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGS--VG----KKEEVYRVWNLYRSVFPGVT---NLGYHAMISSLARIGD- 367 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~- 367 (535)
+++...+++.|.+.|+..+..+|-+....... .. ....+..+|+.|++..+-.+ ...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777888888888887766553332222 22 25678888888888665433 3555555443 3333
Q ss_pred ---HhhHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 368 ---IEGMEKIFEEWLSVKSSYDPR--IANLMMSWYVKEGN--FDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 368 ---~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
.+..+.+|+.+.+.|+..+-. ....++...-.... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 345667777777767664322 22223322221111 44677888888888888777777665433
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.46 E-value=1.4 Score=35.50 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHhcCCHhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 362 LARIGDIEGMEKIFEEWLSVKSS--YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
..+.|+++.|.+.|+.+...-+. ......-.++.+|.+.|++++|...+++.++..+.-.-+-|...+.|++...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34556666666666665543221 1233444566666666666666666666666544322344555555554433
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.23 E-value=1.6 Score=43.20 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHH
Q 009424 106 KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNA 185 (535)
Q Consensus 106 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~ 185 (535)
..-...+++-+-+.|..+.|+++-..- ..-.+...++|+++.|.++-++.. +...|..|-+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~--------------~~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP--------------DHRFELALQLGNLDIALEIAKELD----DPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H--------------HHHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh--------------HHHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHH
Confidence 333556777777777777777653221 123455667777777777766653 56677777777
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 265 (535)
..+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++-+.....|- ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 7777777777777776433 56666667777777666666666665542 34444455556666666
Q ss_pred HHHHHHh
Q 009424 266 EGVFELM 272 (535)
Q Consensus 266 ~~~~~~~ 272 (535)
.+++..-
T Consensus 422 v~lL~~~ 428 (443)
T PF04053_consen 422 VDLLIET 428 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6665543
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.22 E-value=0.2 Score=31.20 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
++..+...|...|++++|+++|++..+..+. |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4555666666666666666666666665433 44444433
No 247
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.11 E-value=2 Score=40.06 Aligned_cols=129 Identities=14% Similarity=0.189 Sum_probs=72.2
Q ss_pred HhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh--cC----ChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhcCCC-
Q 009424 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK--IK----EYDEVESMVSEMKEKG---IRLDVYSYNIWLSSCGSQGS- 261 (535)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g---~~pd~~~~~~ll~~~~~~g~- 261 (535)
+++...+++.|.+.|++-+..+|-+....... .. ....+.++|+.|++.- ..++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788888888888877666553333322 22 2457888888888764 23556666666544 3333
Q ss_pred ---HhHHHHHHHHhHhCCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcccCCCcchHHHH
Q 009424 262 ---TEKMEGVFELMKVDKAVNPNW--TTFSTMATMYIKMGQ--VEKAEESLRRVESRITGRDRVPYHYL 323 (535)
Q Consensus 262 ---~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~l 323 (535)
.+.+..+|+.+.+ .|+..+- ...+.++........ ...+.++++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2455666666664 3444332 223333332222111 33566667777777666665555443
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.00 E-value=0.78 Score=41.11 Aligned_cols=34 Identities=6% Similarity=-0.152 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD 367 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 367 (535)
+-++.++++|...|+.||..+-..+++++.+.+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3455666666666666666666666666655554
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=2 Score=39.02 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=58.6
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
..|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4445555555555444332 112333344445555555555555555544333211111122222333333334443444
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cCCCcchHHHHHHHHHhcC
Q 009424 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI-TGRDRVPYHYLLSLYGSVG 331 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g 331 (535)
+....-.+ +-|...-..+...|...|+.+.|.+.+-.+.++. -.-|...-..++..+.-.|
T Consensus 225 l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 225 LQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444331 2244444455555555555555555444443221 1123334444444444444
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.79 E-value=7.5 Score=38.27 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGK-PNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+..+.-+.|+.++|.+.|.+|.+.... -+......|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555555667777777777766543211 133455566667777777777776666654
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.78 E-value=0.15 Score=31.72 Aligned_cols=38 Identities=5% Similarity=0.002 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHH
Q 009424 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMS 500 (535)
Q Consensus 463 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 500 (535)
+|..+-.++...|++++|.++++++++..+.+...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 34444455555555555555555555555544444333
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.70 E-value=5.8 Score=36.75 Aligned_cols=164 Identities=10% Similarity=0.053 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 009424 319 PYHYLLSLYGSVGK---KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMS 395 (535)
Q Consensus 319 ~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 395 (535)
+...++.+|...+. .++|..+++.+....+.+. .++..-+..+.+.++.+.+.+.+.+|+..-.. ....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~-~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP-EVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 45566777777666 4456666677766655543 34445566666678888888888888765321 2233444444
Q ss_pred HH---HHcCChhHHHHHHHHHHHcCCCCCHhHHH-H-HHH---HHHccc------cHHHHHHHHHHhHHhccCCCCCCCH
Q 009424 396 WY---VKEGNFDKAEAFFNSIIEEGGKPNSTSWE-T-LAE---GHIRER------RILEALSCLKGAFAAEGAKSWRPKP 461 (535)
Q Consensus 396 ~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~-li~---~~~~~g------~~~~A~~~~~~m~~~~~~~g~~p~~ 461 (535)
.+ ... ....|...++.+....+.|....|. . ++. ...+.+ +.+...+++....+ ..+-+.+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~---~~~~~ls~ 239 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH---SLGKQLSA 239 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH---HhcCCCCH
Confidence 43 332 3345666666665544444443111 1 111 111211 24444455553331 12223333
Q ss_pred HHHH---HHH----HHHHhcCChhhHHHHHHHHh
Q 009424 462 VNVI---NFF----KACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 462 ~~~~---~ll----~a~~~~g~~~~a~~~~~~~~ 488 (535)
.+-. +++ ..+.+.++++.|.+.++...
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3322 222 25667889999999887543
No 253
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.63 E-value=1.9 Score=35.45 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=53.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCC
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKPNSTSWE-TLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESD 476 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~ 476 (535)
.+.++.+++..++..+.-. .|...... .-...+.+.|+|.+|+.+|+++. +-.|....-..|+..|.....
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~------~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELE------ERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHcC
Confidence 3456777777777777653 33322222 12334567778888888888876 223444455566666665555
Q ss_pred hhhHHHHHHHHhcCCCCChh
Q 009424 477 MGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~ 496 (535)
-..-+.+-+++.+.+..|+.
T Consensus 93 D~~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA 112 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH
Confidence 45555556666676665554
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.58 E-value=2.9 Score=32.95 Aligned_cols=137 Identities=8% Similarity=0.055 Sum_probs=80.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHH---HHHHHHHHHcCChh
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIA---NLMMSWYVKEGNFD 404 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~ 404 (535)
.-.|.+++..++..+..... +..-++.+|--....-+-+-..+.++. -|--.|.... -.++.+|++.|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~Lds---IGkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDS---IGKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHH---HGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHH---HhhhcCchhhcchHHHHHHHHHhcc--
Confidence 34577888888887776542 223455555444444444444444443 3333344332 234444444433
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFV 484 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 484 (535)
+.......+..+..+|+-+.-.+++++.. . .-+|++.....+..||.+.|+..++.+++
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~----k-n~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELK----K-NEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHh----h-ccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 44455666788888999999889999887 4 44788889999999999999999999999
Q ss_pred HHHhcCCCC
Q 009424 485 ALLRQPGYR 493 (535)
Q Consensus 485 ~~~~~~~~~ 493 (535)
.+..+.|..
T Consensus 144 ~~ACekG~k 152 (161)
T PF09205_consen 144 KEACEKGLK 152 (161)
T ss_dssp HHHHHTT-H
T ss_pred HHHHHhchH
Confidence 999998864
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=2.1 Score=39.48 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=97.4
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhhHHH--HHHHHHhcCCHhh
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSV-FPGVTNLGYHA--MISSLARIGDIEG 370 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~--ll~~~~~~g~~~~ 370 (535)
-.|+..+|-..++++.+. .+.|...+.-.=.+|.-.|+.+.-...++++... ....+..+|.. ..-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456777777777777654 4457777777778888888888888777777654 33333344433 2334457788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHccccHHHHHHHHHH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE---GGKPNSTSWETLAEGHIRERRILEALSCLKG 447 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (535)
|++.-++..+.+.. |...-.++...+-..|+..++.++..+-... +--.-..-|....-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88887777665533 5566666777777778888887776554321 0001122344444455666778888888876
Q ss_pred hH
Q 009424 448 AF 449 (535)
Q Consensus 448 m~ 449 (535)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 55
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=5.2 Score=35.35 Aligned_cols=203 Identities=11% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 293 (535)
|.--..+|-...++++|...+.+..+. ..-|...|.+ ...++.|.-+.+++.+ ++--+..|+--..+|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~k---lsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSK---LSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Confidence 333345556666777776655544321 1112222221 1234555555555553 1222335566667788
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hhHHHHHHHHHhcCCH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-----LGYHAMISSLARIGDI 368 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~ 368 (535)
.+|..+-|-..+++.-+ .....++++|+++|.+....-..-+. ..+..+-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 88887777666665432 12334566666666655432111111 2344555556666666
Q ss_pred hhHHHHHHHHHh----cCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHccccHHH
Q 009424 369 EGMEKIFEEWLS----VKSSYDP-RIANLMMSWYVKEGNFDKAEAFFNSIIEEG---GKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 369 ~~a~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
++|-..+.+-.. ..--++. ..|.+.|-.|....++..|.+.++.--+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 666554433211 1111122 235555666677778888999888744321 122566777788877 4466665
Q ss_pred HHHH
Q 009424 441 ALSC 444 (535)
Q Consensus 441 A~~~ 444 (535)
+-++
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5443
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.41 E-value=1.3 Score=39.69 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
|...+...|++++|..+|..+.+..++.+. ..+.-+.....+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444444444444444443322221 2333344444444444444444444443
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=1.6 Score=39.27 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-C-CHHHHHHHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-Y-DPRIANLMM 394 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li 394 (535)
.|+.-+..| +.|++.+|...|....+.+|.-.- ..+-.|..++...|+++.|..+|..+.+.-++ | -+...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355555443 456688888888887776655332 35667888889999999999998888775433 1 245666777
Q ss_pred HHHHHcCChhHHHHHHHHHHHc
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7788888899999998888764
No 259
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.24 E-value=8.6 Score=37.30 Aligned_cols=369 Identities=13% Similarity=0.132 Sum_probs=203.4
Q ss_pred chHHHHHHHh--ccCCCCccHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHHccChHHHHHHHHHHHhc
Q 009424 72 KWNAIFRKLS--LMDNPQLGSASVLNDWEKG--GRSL------------TKWELCRVVKELRKFRRYKHALEVYDWMNNR 135 (535)
Q Consensus 72 ~~n~li~~~~--~~g~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 135 (535)
.|-.+..++. +.+.+. .|++.|...... +..| |-+-=+..+.++...|++.+|+.++++++..
T Consensus 79 ~~l~LF~~L~~Y~~k~~~-kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYR-KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hHHHHHHHHHHHHhhhHH-HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4556665553 457777 788777766544 2221 1122234556778999999999999988865
Q ss_pred C--CCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcC---------CHhHHHHHHHHHH-
Q 009424 136 G--ERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRAR---------MRGNAELLIDKMR- 203 (535)
Q Consensus 136 g--~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~- 203 (535)
= -....+..+|+.++-++++.=-++--......+. | -|--+|..|.+.= .+.-+..++..+.
T Consensus 158 llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~---p---dyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imq 231 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLY---P---DYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQ 231 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccC---h---HHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHH
Confidence 4 0144788899988888776533332111111111 1 2333333333221 1111222222222
Q ss_pred ---------------------HCCCCcCcchHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHH
Q 009424 204 ---------------------DKGYAVHSLPYNVMMTLYMKI--KEYDEVESMVSEMKEKGIRL----DVYSYNIWLSSC 256 (535)
Q Consensus 204 ---------------------~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p----d~~~~~~ll~~~ 256 (535)
..-+.|+ |..++...... .+.+++..+.+.+....+.+ =..+|..++...
T Consensus 232 hlfi~p~e~l~~~mq~l~~We~~yv~p~---~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 232 HLFIVPKERLPPLMQILENWENFYVHPN---YDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHhCCHhhccHHHHHHHHHHhhccCCc---hhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2222333 33333333221 14555555544443322111 246788899999
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcc-hHHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFS-------TMATMYIK----MGQVEKAEESLRRVESRITGRDRV-PYHYLL 324 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li 324 (535)
.+.++...|.+.+..+.. +.|+...-. .+.+..+. .-+..+=+.+|+......+ |.. .-..++
T Consensus 309 Vk~~~T~~a~q~l~lL~~---ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~ 383 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKI---LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLV 383 (549)
T ss_pred HHHHhHHHHHHHHHHHHh---cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHH
Confidence 999999999999887763 355544222 22233331 1123334455555543222 211 111122
Q ss_pred ---HHHHhcCC-HHHHHHHHHHHHhhCCCCchh----hHHHHHHHHHhc---CCHhhHHHHHHHHHhcCCCCC----HHH
Q 009424 325 ---SLYGSVGK-KEEVYRVWNLYRSVFPGVTNL----GYHAMISSLARI---GDIEGMEKIFEEWLSVKSSYD----PRI 389 (535)
Q Consensus 325 ---~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~----~~~ 389 (535)
.-+-+.|. -++|+++++.+.+.. ..|.. ++..+=.+|.+. ..+..-..+-+.+.+.|+.|- ...
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 22334455 788999999887742 22222 222222333322 234455555566667787653 345
Q ss_pred HHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHH
Q 009424 390 ANLMMSW--YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINF 467 (535)
Q Consensus 390 ~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~l 467 (535)
-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-.+..+.++++|++++.... |+..++.+=
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---------~n~~~~dsk 531 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP---------PNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC---------CchhhHHHH
Confidence 5555554 4567888888766555554 67999999999999999999999999998655 666666543
No 260
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=3 Score=39.67 Aligned_cols=60 Identities=8% Similarity=0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..+.-+|.+.+++..|++.-...+..+.. |+...-.=..+|...|+++.|+..|+++++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444444555555555544444444322 333333344455555555555555555554
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.86 E-value=6.2 Score=34.63 Aligned_cols=223 Identities=17% Similarity=0.111 Sum_probs=132.2
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIR-LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEE 303 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~-pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (535)
+....+...+......... .....+......+...+.+..+...+...............+..+...+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443221 124555556666666677776666666655310123444555566666666677777777
Q ss_pred HHHHHHhcccCCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCC--CchhhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 304 SLRRVESRITGRDRVPYHYLLS-LYGSVGKKEEVYRVWNLYRSVFPG--VTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
.+.........+ ......... .+...|+.+.+...+.+.....+. .....+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777665432222 122222223 677778888888888777442221 1223334444446677888888888887766
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 381 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.........+..+...+...++.+.|...+......... ....+..+...+...+..+++...+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 543223566777788888888888888888888774222 23445555555556677888888888887
No 262
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=3.8 Score=38.98 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-----cC---------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhh
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRI-----TG---------RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLG 354 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g-----~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 354 (535)
.+.|.+.|++..|..-|++....- .. .-..+++.+.-+|.+.+++.+|+..-+......+. +.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 345666677777766666643210 00 01223444555566666666666666666554322 2233
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVK 382 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 382 (535)
.-.-..+|...|+++.|+..|+.+++..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3344555666666666666666665544
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.55 E-value=1.6 Score=39.88 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE-----KGIRLDVYSYNIW 252 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~pd~~~~~~l 252 (535)
++..++..+...|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555566666666666655543 33455566666666666666666666655543 3455555444443
Q ss_pred H
Q 009424 253 L 253 (535)
Q Consensus 253 l 253 (535)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.47 E-value=4.9 Score=32.47 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 292 YIKMGQVEKAEESLRRVESRITGR--DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
..+.|++++|.+.|+.+..+-+.. ....--.++.+|.+.+++++|+..+++..+..|....+-|...+.+++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 345566666666666665442211 112333456666677777777777777666666655555666555555433
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.45 E-value=5.6 Score=33.12 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-hHHHH--
Q 009424 283 TTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL-GYHAM-- 358 (535)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l-- 358 (535)
..|.+-+. +++.+..++|+.-|..+.+.|..-=++ .---+.....+.|+...|...|+++-...+.|-.. -..-|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 456677778888888777655432111 11112334566777888888888777655555432 11111
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.-.+...|.+++.....+-+...+-..-...-.+|.-+-.+.|++..|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 223456667777666666554333322333344555556667777777777777665
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.44 E-value=20 Score=39.38 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHH----HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc
Q 009424 243 RLDVYSYNIWLSS----CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV 318 (535)
Q Consensus 243 ~pd~~~~~~ll~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 318 (535)
+||...+.....+ +.....+++|.-.|+..-+. .--+.+|-.+|++.+|+.+..++.. ..|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSE---GKDEL 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHH
Confidence 4555554444433 34456666666666554321 1235567777777777777776632 12222
Q ss_pred h--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 319 P--YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 319 ~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
. -..|+.-+...+++-+|-++..+.... ..-.+..+++...+++|.++-..
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 2 245667777777777777766655431 12334445555556666555443
No 267
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.27 E-value=0.96 Score=33.28 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh-cCCCCChhhHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR-QPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~L~~~y 505 (535)
+.-++.+-++.+. ...+.|++....+.++||.+..|+..|.++++-+. +.|. ....|..+++-.
T Consensus 22 D~we~rr~mN~l~----~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLF----GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHh----ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHHHH
Confidence 3445566666666 67788888899999999999999999999988776 4443 333666655543
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.18 E-value=9.7 Score=35.28 Aligned_cols=163 Identities=14% Similarity=0.155 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 284 TFSTMATMYIKMGQVE---KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
+...++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+++.+.+.+|...-..++ ..+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e-~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE-SNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc-chHHHHHH
Confidence 4556666666666543 445555555433221 233444445555566777777777777766532222 23333333
Q ss_pred HH---HhcCCHhhHHHHHHHHHhcCCCCCHH--HHHHHHHHH---HHcC------ChhHHHHHHHHHHH-cCCCCCHhHH
Q 009424 361 SL---ARIGDIEGMEKIFEEWLSVKSSYDPR--IANLMMSWY---VKEG------NFDKAEAFFNSIIE-EGGKPNSTSW 425 (535)
Q Consensus 361 ~~---~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~---~~~g------~~~~A~~~~~~m~~-~~~~p~~~~~ 425 (535)
.+ .... ...+...+..+....+.|... .-..++... .+.+ +++....+++...+ .+.+.+..+-
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 3322 334455555555444444432 111111111 1111 14445555554333 2222233332
Q ss_pred HH---H----HHHHHccccHHHHHHHHHHhH
Q 009424 426 ET---L----AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 426 ~~---l----i~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+ + ...+.+.+++++|.++|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 2 234557899999999998654
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.11 E-value=6.3 Score=32.95 Aligned_cols=133 Identities=15% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 339 VWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
..+.+...+..++...+..+++.+.+.|++....+++. .++-+|.......+-.+ .+....+.++--.|...
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH--
Confidence 33444445555555566666666666665544444333 23333333222222111 11222233332223221
Q ss_pred CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
=...+..++..+...|++-+|+++.+... . -+...-..++.|..+.+|...--.+++-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~----~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYH----K----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcC----C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01134456666777777777777776653 1 1112224455566666665555555544443
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.07 E-value=5.4 Score=39.16 Aligned_cols=153 Identities=10% Similarity=0.009 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009424 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFF 410 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 410 (535)
.+...-++.-++..+ +.|+..+ .-++-+--....+.++++++++..+.|-. .+ .+....+..-..+
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAd-AYILLAEEeA~Ti~Eae~l~rqAvkAgE~----~l-------g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCAD-AYILLAEEEASTIVEAEELLRQAVKAGEA----SL-------GKSQFLQHHGHFW 247 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhH-HHhhcccccccCHHHHHHHHHHHHHHHHH----hh-------chhhhhhcccchh
Confidence 344444444444444 2333321 22333333456688899999887765421 00 0000000101111
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 411 NSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 411 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
+........|-...-..+...+.+.|+.++|++.|++|.+ +....-+......|+.++...+.+.++..++.+.-+.
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk---e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK---EFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh---hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 2222222223333344567777789999999999999982 1111113346778999999999999999999998665
Q ss_pred CCCChh--hHHH
Q 009424 491 GYRKEK--DYMS 500 (535)
Q Consensus 491 ~~~~~~--~~~~ 500 (535)
..+... .|+.
T Consensus 325 ~lpkSAti~YTa 336 (539)
T PF04184_consen 325 SLPKSATICYTA 336 (539)
T ss_pred cCCchHHHHHHH
Confidence 444433 5654
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=91.98 E-value=13 Score=36.41 Aligned_cols=159 Identities=9% Similarity=0.057 Sum_probs=103.3
Q ss_pred chH--HHHHHHHHhcC-----CHHHHHHHHHHHHh-hCCCCch-hhHHHHHHHHHh---------cCCHhhHHHHHHHHH
Q 009424 318 VPY--HYLLSLYGSVG-----KKEEVYRVWNLYRS-VFPGVTN-LGYHAMISSLAR---------IGDIEGMEKIFEEWL 379 (535)
Q Consensus 318 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~~-~~~~~~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 379 (535)
..| ..++.+..... ..+.|+.+|.+... ...+|+- ..|..+..++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55666655522 36778888988872 1234433 333333322221 234567778888888
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
+.+.. |+.....+..++...|+++.|...|++....++. ...+|......+.-.|+.++|.+.+++.. ...|
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al------rLsP 403 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL------QLEP 403 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh------ccCc
Confidence 77755 8888888888888889999999999999885443 45667666777778999999999999977 3556
Q ss_pred CHH---HHHHHHHHHHhcCChhhHHHHHH
Q 009424 460 KPV---NVINFFKACEEESDMGSKEAFVA 485 (535)
Q Consensus 460 ~~~---~~~~ll~a~~~~g~~~~a~~~~~ 485 (535)
... .....+..|+..+ .+.+.+++-
T Consensus 404 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 404 RRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 432 3333344555544 455555553
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.72 E-value=6.9 Score=36.72 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 223 KIKEYDEVESMVSEMKEK--GIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~--g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
...+.++|+..+..-+.+ +...-..++..+..+.+..|.++++..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 445566666666555443 111223455555666666666555544
No 273
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.67 E-value=6.2 Score=32.00 Aligned_cols=48 Identities=13% Similarity=0.031 Sum_probs=26.8
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 400 EGNFDKAEAFFNSIIEEGGK-PNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.++.+++..+++.|.-..++ |...++.. ..+.+.|+|++|+++|++..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhh
Confidence 56666777776666653221 12222222 33556677777777777766
No 274
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=13 Score=35.56 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=124.3
Q ss_pred HHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCC-CCHHHHHHHHHHHHHcCCHh
Q 009424 115 ELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTL-KDRRVYGALLNAYVRARMRG 193 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~ 193 (535)
++-+..++..|+..+...++.. +-+..-|..-...|...|++++|.--...-.+.. .......-.-.++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~---pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC---PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC---ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 3445556667777777777765 2234444444455555566665544333222210 11111111112222222222
Q ss_pred HHHHHHH---------------HHHHCCC-CcCcchHHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 009424 194 NAELLID---------------KMRDKGY-AVHSLPYNVMM-TLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS-- 254 (535)
Q Consensus 194 ~A~~~~~---------------~m~~~g~-~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~-- 254 (535)
+|...++ ....... +|...+|-.+- ..+.-.|+.++|.++-...++.+- ...+..+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccc
Confidence 2222222 1111111 12223343332 344566788888777766666531 122333333
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH-------------HHHHHHHhcCCHHHHHHHHHHHHhc---ccCCCcc
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS-------------TMATMYIKMGQVEKAEESLRRVESR---ITGRDRV 318 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~ 318 (535)
++.-.++.+.|...|++..+ ..|+-..-- -=.+...+.|++..|.+.|.+.+.. ...++..
T Consensus 212 ~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred ccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 34456778888888887764 244433221 1223345677777777777776542 1223333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hh--HHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LG--YHAMISSLARIGDIEGMEKIFEEWLSVK 382 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 382 (535)
.|-.......+.|+.++|+.--+..... |. .. |..-..++...++|+.|.+-++...+..
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555566677777777766665442 22 11 2222233444566777777776665543
No 275
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.49 E-value=4.2 Score=32.00 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=48.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hhHHHHHHHHHhcCC
Q 009424 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN---LGYHAMISSLARIGD 367 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~ 367 (535)
+.+..|+++.|++.|.+...-- +.....||.-.+++--.|+.++|++=+++..+....... ..|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666654421 124455666666666666666666666655543111111 223333334455566
Q ss_pred HhhHHHHHHHHHhcC
Q 009424 368 IEGMEKIFEEWLSVK 382 (535)
Q Consensus 368 ~~~a~~~~~~~~~~~ 382 (535)
.+.|+.=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555544
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.35 E-value=1.2 Score=33.16 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 440 EALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+..+-++.+. ...+.|++....+.++||.+..|+..|.++++-+....-.....|..+++-.
T Consensus 28 e~rrglN~l~----~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLF----GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHT----TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHh----ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 4555666666 7778889999999999999999999999998887643222222676666544
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.29 E-value=8.5 Score=36.13 Aligned_cols=165 Identities=14% Similarity=0.021 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-----CCcchH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIKMGQVEKAEESLRRVESRITG-----RDRVPY 320 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~~~ 320 (535)
|-.+-+++-+.-++.+++.+-..-....|..|. -...-+|-.++...+.++++++.|+...+--.. .....+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444555555544443322232221 122334555566666777777777765432111 123467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCchhhH-----HHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CCHH--
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRS----VFPGVTNLGY-----HAMISSLARIGDIEGMEKIFEEWLSVKSS-YDPR-- 388 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~-- 388 (535)
..+-+.|.+..+.++|.-+..+..+ .+.+--..-| -.+.-++-..|.+.+|.+.-++..+..+. -|..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 7777778888888877766655433 1211111112 23344556667766666666554432211 1333
Q ss_pred --HHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 389 --IANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 389 --~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
....+.+.|...|+.+.|+.-|+..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3345667788888888887777654
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.58 E-value=12 Score=33.44 Aligned_cols=173 Identities=15% Similarity=0.133 Sum_probs=94.1
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc-----
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNP-NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV----- 330 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----- 330 (535)
.+.|++++|.+.|+.+..+....| ...+--.++-++.+.+++++|...+++..+.-+.-..+-|..-|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 456777777777777775432211 23344455566677777777777777776554443344455555554422
Q ss_pred --CCHH---HHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH
Q 009424 331 --GKKE---EVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 331 --g~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 405 (535)
.+.. +|+.-|+++....|... -...|..-...+... =...=..+.+-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~---------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSR---------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCc---------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHH
Confidence 2233 33344444444333321 111222221111100 00011245677888899988
Q ss_pred HHHHHHHHHHcCCCCC---HhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 406 AEAFFNSIIEEGGKPN---STSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 406 A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|..-+++|.+. ..-. ....-.+..+|.+.|..++|.+.-+-+.
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888875 2112 3345556678888888888877766665
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.49 E-value=5.6 Score=33.89 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC--cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH--SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
..+..+...|.+.|+.++|++.|.++.+....+. ...+-.+|......+++..+.....+....--.+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566666777777777777777777766543332 23455566666667777766666655543211111111111111
Q ss_pred -----HHhcCCCHhHHHHHHHHhH
Q 009424 255 -----SCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 255 -----~~~~~g~~~~a~~~~~~~~ 273 (535)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1233566777666666554
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.47 E-value=0.089 Score=43.15 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 445666667777777777777776665556777788888888887777777776621 1122234556666666
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 6666666666554
No 281
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=15 Score=34.18 Aligned_cols=116 Identities=5% Similarity=-0.183 Sum_probs=57.2
Q ss_pred CCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhc-CCCcccCHhHHHHHHHHHHhhCCHhhH
Q 009424 84 DNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR-GERFRLSASDAAIQLDLIAKVHGVASA 162 (535)
Q Consensus 84 g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~~~li~~~~~~g~~~~A 162 (535)
|+.. +|...++++++. .+-|...+...=.+|...|+...-+..++.++-. ....+..+++.....-++..+|-+++|
T Consensus 117 g~~h-~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHH-EAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccc-HHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444 455555555442 3335555555555566666555555555555433 211222233333333344455666666
Q ss_pred HHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 009424 163 EDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDK 201 (535)
Q Consensus 163 ~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 201 (535)
++.-++..+. .-|..+-.++....--+|+..++.++..+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666555544 23444444555555555566665555443
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.25 E-value=4.4 Score=34.50 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDR--VPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
.+..+.+.|.+.|+.+.|.+.|.++.+....+.. ..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566667777777777777777777654333322 2344556666666677666666665544
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=4.1 Score=37.35 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=61.4
Q ss_pred ccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-----CC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcc
Q 009424 140 RLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-----LK--DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSL 212 (535)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 212 (535)
+.+..+...++..-....+++++...+-++... .+ ..++|-.++.- -++++++.+...=.+-|+-||-.
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchh
Confidence 334444445555555566777777766655543 11 22333333332 25667777777777778888888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKG 241 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 241 (535)
+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888777777666543
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.03 E-value=24 Score=36.52 Aligned_cols=179 Identities=12% Similarity=-0.048 Sum_probs=92.5
Q ss_pred HhHHHHHHHHhHhCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh-------cccCCCcchHHHHHHHHHhcC--
Q 009424 262 TEKMEGVFELMKVDKAVNPNWTTFSTMATM-YIKMGQVEKAEESLRRVES-------RITGRDRVPYHYLLSLYGSVG-- 331 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g-- 331 (535)
...+.++++...+.+.+.+-...-.....+ +....|.+.|..+|+...+ .| +......+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 445666666666432111111111122222 4455677777777777655 33 3334555666666643
Q ss_pred ---CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh-cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HcCCh
Q 009424 332 ---KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR-IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYV----KEGNF 403 (535)
Q Consensus 332 ---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~ 403 (535)
+.+.|+.+|...-..+. |+.......+.-... ..+...|.++|....+.|.. ..+-.+..+|. -..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCH
Confidence 56678888887776533 333322222221111 23567888888888777743 22222222222 12356
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..|..++.+.-++| .|-..--...+..+.. ++++.+.-.+..+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 77788887777765 2222222222333334 66666666666666
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.97 E-value=0.63 Score=27.34 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=16.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667777777777777777644
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=29 Score=36.61 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=91.1
Q ss_pred hccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHh
Q 009424 81 SLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVA 160 (535)
Q Consensus 81 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~ 160 (535)
-+.|+++ +|..-|-+-... +.| +.+++-+....++.+-...++.+.+.| + .+......|+.+|.+.++.+
T Consensus 379 y~Kgdf~-~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g--l-a~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 379 YGKGDFD-EATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG--L-ANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HhcCCHH-HHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc--c-ccchhHHHHHHHHHHhcchH
Confidence 4578999 998888775432 222 245666777777888888888999988 3 44556678899999999999
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 009424 161 SAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEM 237 (535)
Q Consensus 161 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 237 (535)
.-.+..+....... ..-....+..+-+.+-.++|..+-...... .. .+.-.+-..+++++|++.+..|
T Consensus 449 kL~efI~~~~~g~~-~fd~e~al~Ilr~snyl~~a~~LA~k~~~h-----e~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCDKGEW-FFDVETALEILRKSNYLDEAELLATKFKKH-----EW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCCCcce-eeeHHHHHHHHHHhChHHHHHHHHHHhccC-----HH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 99988887763100 112445566677777777777766554332 22 2222334566777777776544
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.28 E-value=0.0074 Score=49.65 Aligned_cols=49 Identities=8% Similarity=0.209 Sum_probs=20.0
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 234 (535)
+.+.+.++.....++.+...+...+....+.++..|++.++.++..+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444444444444443332233344444444444444444444443
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.25 E-value=12 Score=31.30 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=52.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH-HHHHH--HHHHHHcCCh
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR-IANLM--MSWYVKEGNF 403 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 403 (535)
++.+..++|+.-|..+...|...-. ...-.+.....+.|+...|...|+++-.....|-+. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445566666666666554433211 111222233445566666666666654443333221 11111 1122334555
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+....-.+-+...+-......-..|.-+-.+.|++.+|.++|..+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5544444444332222222233334444445555555555555555
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.15 E-value=4 Score=37.42 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
++++++.++..=+ ..|+-||..++..++..+.+.+++.+|.++...|+
T Consensus 115 ~pq~~i~~l~npI----qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPI----QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcc----hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445555555555 45555555555555555555555555555554444
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.92 E-value=1 Score=26.48 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSE 236 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~ 236 (535)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666555
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.65 E-value=23 Score=33.93 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP---NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
...+|..+...+.+.|.++.|...+..+...+... .....-.-...+-..|+..+|+..++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666666667777777776666666532111 22233333445555666666666666555
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.31 E-value=0.61 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=10.6
Q ss_pred CHhHHHHHHHHHHccccHHHH
Q 009424 421 NSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A 441 (535)
|...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.25 E-value=20 Score=32.71 Aligned_cols=73 Identities=8% Similarity=-0.003 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh-ccCCCCCCCHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAA-EGAKSWRPKPVN 463 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~g~~p~~~~ 463 (535)
.+.....|..+|.+.+|.++-++....+.- +...|-.++..++..|+--.|.+-+..+.+. ..+.|+..|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 445556677777777777777777664332 6666777777777777766666666655421 113455554433
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.85 E-value=14 Score=30.50 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=40.2
Q ss_pred hhCCHhhHHHHHhhCCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 155 KVHGVASAEDFFLSLPDTLKDR---RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 155 ~~g~~~~A~~~f~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
+.++.+++..+++.+.-..|.. .++.. ..+.+.|++.+|+++|+++.+.+ |....-..|+..|.....-..-.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHH
Confidence 3445555555555543332322 22222 23456677777777777765553 33333344444444443333333
Q ss_pred HHHHHHHHcCCCCC
Q 009424 232 SMVSEMKEKGIRLD 245 (535)
Q Consensus 232 ~~~~~m~~~g~~pd 245 (535)
..-+++.+.+-.|+
T Consensus 98 ~~A~evle~~~d~~ 111 (160)
T PF09613_consen 98 RYADEVLESGADPD 111 (160)
T ss_pred HHHHHHHhcCCChH
Confidence 33344555543333
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.83 E-value=0.9 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+|..+...|...|++++|++.|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 356667777777777777777777777
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.54 E-value=0.77 Score=26.59 Aligned_cols=31 Identities=13% Similarity=0.413 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 376 EEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 376 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
++.++..+. +...|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444443 6777777777787888777775
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.73 E-value=13 Score=37.39 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=47.1
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|....+ |..|+-.+...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 34555555555443332 334455555555555666555555554322 34444555555554444
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
..+-...++.|.. + ....++...|+++++.+++..
T Consensus 712 ~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHh
Confidence 4444444433222 1 122234445555555555543
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.41 E-value=4.6 Score=30.20 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 229 EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 229 ~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
+..+-++.+...++.|+..+..+.+++|.+.+++..|.++|+.++.+.+-..+ .|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHH
Confidence 45555666666677777777777778888888888888877777754332222 555444
No 299
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.26 E-value=22 Score=31.04 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCCHhHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG--GKPNSTSWETLAEG 431 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~ 431 (535)
|....++.+.+.+.+++++.....-++.++. |...-..+++.||-.|++++|..-++-.-+.. ..+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566777788888888888877776654 66677778888888999998887777665432 22344556665554
Q ss_pred HHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHH-H--HHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 432 HIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFK-A--CEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~-a--~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
-.... ++|.-=. .-|+.- ....|...+. + |...|.-+....+-+...+.++.+..
T Consensus 82 ea~R~------evfag~~----~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 EAARN------EVFAGGA----VPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHHH------HHhccCC----CCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 22111 1222111 222221 2334554444 2 22333444455555666677766544
No 300
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.22 E-value=12 Score=28.04 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 009424 121 RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLID 200 (535)
Q Consensus 121 ~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 200 (535)
.-++|..|-+++...+ .....+.-.-+..+...|++++|..+.+...- ||...|-+|-.. +.|..+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~--pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCY--PDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCCCC--chHHHHHHHHHH--hhccHHHHHHHHH
Confidence 3466777777776655 12333333344556777888888888888875 888888777553 5666666666666
Q ss_pred HHHHCC
Q 009424 201 KMRDKG 206 (535)
Q Consensus 201 ~m~~~g 206 (535)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 676666
No 301
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.20 E-value=27 Score=32.02 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-ccCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVESR-ITGRDRVPYHYLLSLYGSVGKKEEVYRVW 340 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (535)
.++..+...+|..+++.+++..-.++++..... +...|...|..+|..-.+.|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 444445555555555555555555555544332 33444555555555555555544444433
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.39 E-value=5.9 Score=29.33 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHh
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKV 274 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 274 (535)
-++.+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+.++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555556666666677777777777777777777777777776663
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.19 E-value=1.5 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=16.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|..+...|.+.|++++|++.|++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666667777777777777666
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.15 E-value=36 Score=32.57 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR---DRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
...+|..+...+-+.|.++.|...+..+...+... +....-.-....-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666667777777777666665433211 222333334555556666666666666554
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.09 E-value=54 Score=34.45 Aligned_cols=219 Identities=11% Similarity=0.098 Sum_probs=98.8
Q ss_pred chHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCh-------HHHHHHHHHHHhcCCCcccCHh
Q 009424 72 KWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRY-------KHALEVYDWMNNRGERFRLSAS 144 (535)
Q Consensus 72 ~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~~~ 144 (535)
.| ++|=-+.|+|+.+ +|+++..+.... .......|...++.+....+- +....-|++..+.. ...|++
T Consensus 114 ~W-a~Iyy~LR~G~~~-~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~--~~~Dpy 188 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYD-EALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS--TDGDPY 188 (613)
T ss_dssp HH-HHHHHHHTTT-HH-HHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT---TTS-HH
T ss_pred cH-HHHHHHHhcCCHH-HHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC--CCCChH
Confidence 44 6777889999999 999999665443 555566677888888765332 34555566666554 222333
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCH--HHHHHHHHHHHHcCC-----------HhHHHHHHHHHHHCCCCcCc
Q 009424 145 DAAIQLDLIAKVHGVASAEDFFLSLPDTLKDR--RVYGALLNAYVRARM-----------RGNAELLIDKMRDKGYAVHS 211 (535)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~ 211 (535)
=... ....++|.-...- .+....++ ..|-.|. .++... +++..+...+.-+.-+.+ .
T Consensus 189 K~Av-Y~ilg~cD~~~~~------~~~V~~tiED~LW~~L~--~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~ 258 (613)
T PF04097_consen 189 KRAV-YKILGRCDLSRRH------LPEVARTIEDWLWLQLS--LVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-G 258 (613)
T ss_dssp HHHH-HHHHHT--CCC-S-------TTC--SHHHHHHHHHH--H---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHHH-HHHHhcCCccccc------hHHHhCcHHHHHHHHHH--hhccCCCccccccccccHHHHHHHHHHhchhhccc-c
Confidence 2111 1111333221110 00001122 3344332 222221 223333333333332333 1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHH
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM 291 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 291 (535)
...-.....+.-.|+++.|++.+.+ ..+...|.+.+...+.-|.-.+-.+... ..+.....-.|...-+..||..
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 1122344566778999999999876 3344567777777776654433332222 2222111011222567889999
Q ss_pred HHh---cCCHHHHHHHHHHHHh
Q 009424 292 YIK---MGQVEKAEESLRRVES 310 (535)
Q Consensus 292 ~~~---~g~~~~A~~~~~~m~~ 310 (535)
|.+ ..+..+|.++|--+..
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 987 4577888888876644
No 306
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.18 E-value=6.6 Score=30.66 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 440 EALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+..+-++... ...+.|++......++||.+.+|+..|.++++-+...-......|-.+++-.
T Consensus 67 EvrkglN~l~----~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLF----DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhh----ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445566666 7778899999999999999999999999999887744333333566555543
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.24 E-value=12 Score=32.18 Aligned_cols=75 Identities=11% Similarity=-0.028 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSK 480 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a 480 (535)
+.|.+.|-.+...+.--++..-..+...|. ..+.++++.++..+.+.. ..+-.+|+..+.+|.+.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~-~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS-NPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455566655555443324444444444333 455666676666666433 222355666677777777766666655
No 308
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.03 E-value=10 Score=32.98 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFK 469 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~ 469 (535)
.+.-++.+.+.+++++|+...+.-.+..+. |..+-..++..|+-.|+|++|..-++-.-+. +....+-..+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l--~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATL--SPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhc--CcccchHHHHHHHHHH
Confidence 445567788889999999998887776444 7777888999999999999999888877632 1223344556766665
Q ss_pred H
Q 009424 470 A 470 (535)
Q Consensus 470 a 470 (535)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 3
No 309
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.99 E-value=62 Score=35.06 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=29.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+-.|.+....+-+..+++.+....-.++..-.+.++..|+.
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 33456677788888888888875555577777778777764
No 310
>PRK09687 putative lyase; Provisional
Probab=82.37 E-value=42 Score=31.11 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=10.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
..+.++...|.. +|...+..+.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344455555543 34444444443
No 311
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.16 E-value=76 Score=33.96 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=112.2
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChh
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYD 228 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 228 (535)
+-..|...|+++.|.++-..-++ .-..++-.-.+.|.+.+++..|-+++.++.+ +|..+.--+....+.+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~--~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPD--ALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHH
Confidence 34567778888888776554321 1112334444566777888888888887733 2444444444555544
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH-----HHHHH-hcCCCHh----HHHHHHHH--------hHhCCCCCCCHHHHHHHHH
Q 009424 229 EVESMVSEMKEKGIRLDVYSYNI-----WLSSC-GSQGSTE----KMEGVFEL--------MKVDKAVNPNWTTFSTMAT 290 (535)
Q Consensus 229 ~a~~~~~~m~~~g~~pd~~~~~~-----ll~~~-~~~g~~~----~a~~~~~~--------~~~~~~~~~~~~~~~~li~ 290 (535)
++..|-.=+-..++|...+-.. ++..| .+.++++ ++..-++. +.+......+.....+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Confidence 4333322222223333332222 12221 1222222 22211111 1100001122223344445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-------------hCC---------
Q 009424 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS-------------VFP--------- 348 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------~~~--------- 348 (535)
.....|+.+....+-.-|.+ |..++.-+.+.+.+++|++++..-.. ..+
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~ 583 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMA 583 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHH
Confidence 55666777776666555543 55667777777888888777654211 000
Q ss_pred ---CCchhhHHHHHHHHHhcC---CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 349 ---GVTNLGYHAMISSLARIG---DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 349 ---~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
..+..-...++..+.+.+ ....+....+.....-..-++..+|.++..|++..+-
T Consensus 584 ~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 584 QKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD 644 (911)
T ss_pred ccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc
Confidence 001112234444444442 2333444444433333334788888888888765543
No 312
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.39 E-value=66 Score=32.72 Aligned_cols=131 Identities=7% Similarity=0.092 Sum_probs=90.7
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWE-LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
+...|+.+|..--+..... .+..+++.++. -.|..+- |.....-=.+.|..+.+.++|+..++. ++.+...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~-~~r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~ 117 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVD-ALREVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWL 117 (577)
T ss_pred cccchHHHHhccCchhHHH-HHHHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHH
Confidence 4557888887666555555 66677777765 3555543 333333345678889999999988875 556666665
Q ss_pred HHHHHHH-hhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 009424 148 IQLDLIA-KVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDK 205 (535)
Q Consensus 148 ~li~~~~-~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 205 (535)
..+.... ..|+.+..++.|++.... -.....|...|.--..++++.....++++..+.
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5555443 346777788888876543 345667888888888889999999999998875
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.31 E-value=22 Score=35.92 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=46.2
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEK 373 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 373 (535)
+.|+++.|.++..+. -+..-|..|-++..+.+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 445555555554433 2344455555555555555555555554432 3445555555555544444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444333321 122233444555555555543
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.18 E-value=13 Score=32.01 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-----CCCHHHHHHHHHHHHHcCCHhHHH
Q 009424 123 KHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-----LKDRRVYGALLNAYVRARMRGNAE 196 (535)
Q Consensus 123 ~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 196 (535)
+.|++.|-.+...+ .--++.....+...|. ..+.+++..++.+..+. .+|+..+.+|++.|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTP--ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCC--CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44555555555555 3334444444444444 45555565555443222 356677777777777777776663
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.69 E-value=4.5 Score=24.19 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444445555555555555554443
No 316
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.65 E-value=44 Score=30.21 Aligned_cols=209 Identities=13% Similarity=0.152 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHHHH-HhcCCCHhHHHHHHHHhHhCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh---cccC
Q 009424 241 GIRLDVYSYNIWLSS-CGSQGSTEKMEGVFELMKVDKAVNPNW--TTFSTMATMYIKMGQVEKAEESLRRVES---RITG 314 (535)
Q Consensus 241 g~~pd~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 314 (535)
+-.||+..-|..-.+ -.+..++++|..-|++..+-.|-+.+. -....+|..+.+.|++++....+.+|.. +.+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445666554433222 123457888888888887543333222 2345677888888888888888888743 2222
Q ss_pred C--CcchHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC--
Q 009424 315 R--DRVPYHYLLSLYGSVGKKEEVYRVWNLYRS-----VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY-- 385 (535)
Q Consensus 315 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-- 385 (535)
. +..+.|+++..-....+.+-..++|+.-.. .+....-.|-+-+...|...+.+....++++++....-.-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 2 234566777666666666555555554322 1111111244456667777777777777777665433211
Q ss_pred --C-------HHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCHhHHHHHHHHH-----HccccHHHHHHHHHHhHH
Q 009424 386 --D-------PRIANLMMSWYVKEGNFDKAEAFFNSIIE-EGGKPNSTSWETLAEGH-----IRERRILEALSCLKGAFA 450 (535)
Q Consensus 386 --~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~ 450 (535)
| ..+|..-|.+|....+-..-..++++... +.-.|.+..... |+-| .+.|++++|..=|-++..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 23566667777777666666677776665 445555544433 3323 456777777765555553
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.40 E-value=4.8 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMR 203 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~ 203 (535)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555556666666666555543
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.12 E-value=40 Score=29.47 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 462 VNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
.||-.+-+-+...|+.++|..+|+..+..+.-+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 466666667777788888888887777655443
No 319
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.06 E-value=23 Score=32.15 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK---- 399 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 399 (535)
|++++..++|.+++...-+--+.--+.+....-.-|-.|.+.+......++-.......-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555555555555444333322222222233444445555666655555555544433222223335555544443
Q ss_pred -cCChhHHHHHH
Q 009424 400 -EGNFDKAEAFF 410 (535)
Q Consensus 400 -~g~~~~A~~~~ 410 (535)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 36666665554
No 320
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.78 E-value=5.8 Score=22.53 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m 308 (535)
|..+...|...|++++|...|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 334444444444444444444443
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.58 E-value=22 Score=34.89 Aligned_cols=118 Identities=6% Similarity=-0.024 Sum_probs=67.3
Q ss_pred HhcCCHHHHH-HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009424 328 GSVGKKEEVY-RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 328 ~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
...|+.-.|- +++.-+......|+.+...+. .....|+++.+.+.+....+. +.....+...++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3445554443 344444444344444333333 345677777777777654322 222445666677777777777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+-+.|....++ +..........--+.|-++++...|++..
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 7777777765555 44433333333445566777777777776
No 322
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.57 E-value=67 Score=31.72 Aligned_cols=129 Identities=10% Similarity=-0.035 Sum_probs=61.5
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCC
Q 009424 93 VLNDWEKGGRSLTKWE--LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLP 170 (535)
Q Consensus 93 ~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 170 (535)
+++.+.+.|..|+... -.+.+..++..|+.+ +.+.+.+.|.............+...++.|+.+....+++.-.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence 4555566777765432 234555666677765 3444455552111111122334566677788887777776543
Q ss_pred CC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchH--HHHHHHHHhcCChhHH
Q 009424 171 DT--LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPY--NVMMTLYMKIKEYDEV 230 (535)
Q Consensus 171 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a 230 (535)
.. ..+.. ..+.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-+
T Consensus 93 ~~~~~~~~~-g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 93 FADDVFYKD-GMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred cccccccCC-CCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 21 00111 11223333455554 344444555655543221 2234444456665443
No 323
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.66 E-value=40 Score=28.56 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHccc-----------cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 422 STSWETLAEGHIRER-----------RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 422 ~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
..++..+..+|...+ .+++|.+.|+++. ...|+..+|..-+..+. .|-+++.++.+.
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv------~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV------DEDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH------HH-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH------hcCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 355555665554332 3677777888777 56899999998887764 356666666555
Q ss_pred CCC
Q 009424 491 GYR 493 (535)
Q Consensus 491 ~~~ 493 (535)
+..
T Consensus 137 ~~~ 139 (186)
T PF06552_consen 137 GLG 139 (186)
T ss_dssp SS-
T ss_pred Hhh
Confidence 443
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.65 E-value=4.3 Score=22.96 Aligned_cols=32 Identities=3% Similarity=-0.157 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 462 VNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
..|..+-..+...|++++|.+.+++.++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35667778899999999999999999877654
No 325
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.40 E-value=7.9 Score=27.48 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
+..+.++|+..|+...+....+.. .++..++.+++..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666554444333 4556666666666666555443
No 326
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.58 E-value=49 Score=28.99 Aligned_cols=86 Identities=13% Similarity=-0.016 Sum_probs=49.1
Q ss_pred HHhhCCHhhHHHHHhhCCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHH--HHhcCChhH
Q 009424 153 IAKVHGVASAEDFFLSLPDTLKD-RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTL--YMKIKEYDE 229 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~ 229 (535)
|-..|-+.-|+--|.+.....|+ ..+||-|---+...|+++.|.+.|+...+.+ | ..-|..+=++ +.--|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p-~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--P-TYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--C-cchHHHhccceeeeecCchHh
Confidence 33445555555556555444333 4577777777777888888888888777764 1 1222222221 123467777
Q ss_pred HHHHHHHHHHcC
Q 009424 230 VESMVSEMKEKG 241 (535)
Q Consensus 230 a~~~~~~m~~~g 241 (535)
|.+-|...-+.+
T Consensus 152 Aq~d~~~fYQ~D 163 (297)
T COG4785 152 AQDDLLAFYQDD 163 (297)
T ss_pred hHHHHHHHHhcC
Confidence 766665555543
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.55 E-value=33 Score=29.42 Aligned_cols=91 Identities=11% Similarity=0.107 Sum_probs=52.6
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhc
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRR----VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 224 (535)
+...+..+|++++|..-+......+.|.. .--.|.....+.|.+++|+.+++.....++.+ .....-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHc
Confidence 34456666677777666665543322221 22233455666777777777777665554211 1122234667777
Q ss_pred CChhHHHHHHHHHHHcC
Q 009424 225 KEYDEVESMVSEMKEKG 241 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g 241 (535)
|+-++|..-|...++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777777765
No 328
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.24 E-value=1.2e+02 Score=33.14 Aligned_cols=117 Identities=11% Similarity=0.154 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC---cchHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCchhhHH--
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRD---RVPYHYLLSLYGSVGKK--EEVYRVWNLYRSVFPGVTNLGYH-- 356 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~-- 356 (535)
-|..|+..|...|..++|+++|.+..+.--.-| ...+-.++....+.+.. +-.+++-+......+.-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 478899999999999999999999865210011 11223344544444443 44444444443322221111111
Q ss_pred ----------HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 009424 357 ----------AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE 400 (535)
Q Consensus 357 ----------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 400 (535)
..+-.+......+.+...++.+....-..+....+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 12334556667778888888888766666778888888888763
No 329
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.56 E-value=1e+02 Score=32.12 Aligned_cols=241 Identities=12% Similarity=0.094 Sum_probs=57.4
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHH------H----HHHHHHHHhcccCCCcchHHHHHHHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEK------A----EESLRRVESRITGRDRVPYHYLLSLY 327 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------A----~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (535)
-.|++..+.+....+. .|..+-..+.+.+..+|-++. . .+.+-.--....-.+...|..-+..+
T Consensus 309 ~~~d~~~vL~~~~~~~------~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~yL 382 (566)
T PF07575_consen 309 FEGDIESVLKEISSLF------DDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIGYL 382 (566)
T ss_dssp HTS--GGGHHHHHHH--------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHHHH
T ss_pred HccCHHHHHHHHHHHc------cchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 3677777777666553 133445556666666665551 0 00000000001112344455555444
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
...++.. ....+.....-+-.+.....-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.++|+.....
T Consensus 383 ~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~ 458 (566)
T PF07575_consen 383 SSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVT 458 (566)
T ss_dssp HS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------
T ss_pred HHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHH
Confidence 4433222 44444444444445555666777778888877777777776543221 1122334444444555544433
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHH---HHhcCChhhHHHHH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKA---CEEESDMGSKEAFV 484 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a---~~~~g~~~~a~~~~ 484 (535)
.+.+.+ +..|...|... ...+++.+. ...+--+.-++...++- ....|++.+|.+.+
T Consensus 459 ~i~~~l---------------l~~~~~~~~~~-~~~ll~~i~----~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~L 518 (566)
T PF07575_consen 459 RIADRL---------------LEEYCNNGEPL-DDDLLDNIG----SPMLLSQRLSFLAKYREFYELYDEGDFREAASLL 518 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH---------------HHHHhcCCCcc-cHHHHHHhc----chhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333332 23444444311 222222222 11111112222222221 13447888888888
Q ss_pred HHHhcCCCCChhhH-HHHHHHhHhhhhcccccCCCCCChhHHHHHHhhh
Q 009424 485 ALLRQPGYRKEKDY-MSLIGLTDEAVAENNKKNDEDSDEDSEMLLSQLQ 532 (535)
Q Consensus 485 ~~~~~~~~~~~~~~-~~L~~~y~~~~~~~~~~~~i~~~~~~~~l~~~l~ 532 (535)
-.+++....|...+ ..|.++. ..=+..+.+-..++|..+++.|+
T Consensus 519 v~Ll~~~~~Pk~f~~~LL~d~l----plL~~~~~~f~~~~~~~ll~~Le 563 (566)
T PF07575_consen 519 VSLLKSPIAPKSFWPLLLCDAL----PLLESDEVIFSSSDTYELLRCLE 563 (566)
T ss_dssp -------------------------------------------------
T ss_pred HHHHCCCCCcHHHHHHHHHHHH----HHhCCCCCccCHHHHHHHHHHHH
Confidence 88888888888855 4444443 11111222333346666666554
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.46 E-value=40 Score=29.06 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCch----hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTN----LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
+.|++++|..-|......-+.... +.|..-..++.+.+.++.|..--...++.++. .......-..+|-+...++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHH
Confidence 445555555555554443222221 23333344455555555555555555444432 1112222234555666666
Q ss_pred HHHHHHHHHHHc
Q 009424 405 KAEAFFNSIIEE 416 (535)
Q Consensus 405 ~A~~~~~~m~~~ 416 (535)
+|+.-|..+.+.
T Consensus 186 ealeDyKki~E~ 197 (271)
T KOG4234|consen 186 EALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.36 E-value=3.2 Score=23.59 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=17.6
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+|..+...|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666677777777777777666
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.81 E-value=42 Score=27.34 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCC-HhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGD-IEGMEKIFEEWLSVKSSYDPRIANLMMSWYV 398 (535)
Q Consensus 354 ~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 398 (535)
+|.+++.+.+.... --.+..+|..+.+.+..+++.-|..+|.++.
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44455555444433 2334444555544444455555555554443
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.60 E-value=92 Score=31.18 Aligned_cols=165 Identities=14% Similarity=0.111 Sum_probs=78.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
|.....+++..+.++....-+..+..+|...|- +...|-.++.+|... .-+.-..+++++.+ ..+ .|++.-..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve-~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVE-YDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcc-hhHHHHHHHH
Confidence 334445555555555555555566666655542 445555555555555 34444555555553 111 2333333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccCC--C---cchHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhhHHHHHHHHH
Q 009424 290 TMYIKMGQVEKAEESLRRVESRITGR--D---RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV-FPGVTNLGYHAMISSLA 363 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~ 363 (535)
..|-+ ++.+.+..+|.....+-+.. + ...|..++..- ..+.+..+.+...++.. |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44443 55555555555554332210 0 11344333211 23455555555555442 22222234444445566
Q ss_pred hcCCHhhHHHHHHHHHhcC
Q 009424 364 RIGDIEGMEKIFEEWLSVK 382 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~ 382 (535)
...++++|.+++..+.+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 6666666666666555544
No 334
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.92 E-value=43 Score=30.54 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc-
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR- 434 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 434 (535)
..=|.+++..+++.++....-+--..--+.-+.+...-|-.|.|.|.+..+.++-..-...--.-+...|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3447899999999988765544333322334566667778899999999999998877764222345568888877764
Q ss_pred ----cccHHHHHHHH
Q 009424 435 ----ERRILEALSCL 445 (535)
Q Consensus 435 ----~g~~~~A~~~~ 445 (535)
.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58888888776
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.70 E-value=82 Score=31.11 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=64.8
Q ss_pred hcCCHHHH-HHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHH
Q 009424 294 KMGQVEKA-EESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGME 372 (535)
Q Consensus 294 ~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 372 (535)
..|++-.| .++|..+....-.|+.+...+.| ....|+++.+.+.+...... ......+..+++....+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34555444 34444444433334444433333 44567777777776665543 2223345667777777777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 373 KIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.+-..|....+. ++.+...-...--..|-++++...|++...
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 777766655554 433333322223334566777777766654
No 336
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.54 E-value=71 Score=29.41 Aligned_cols=65 Identities=9% Similarity=0.053 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 243 RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 243 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
.++..+...+|..++..+++.+-.++++......+...|...|..+|......|+..-...+.++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34444445555555555555555555554443323344445555555555555555544444443
No 337
>PRK09687 putative lyase; Provisional
Probab=72.07 E-value=84 Score=29.14 Aligned_cols=75 Identities=7% Similarity=-0.065 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNV 464 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~ 464 (535)
++..+-...+.++.+.|+. .|...+-...+. ++ .....+.++...|.. +|+..+..+. ... ||..+-
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~----~~~--~d~~v~ 270 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLL----YKF--DDNEII 270 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHH----hhC--CChhHH
Confidence 3556666666677776663 344444444432 12 234566777777774 6777777776 322 366666
Q ss_pred HHHHHHHH
Q 009424 465 INFFKACE 472 (535)
Q Consensus 465 ~~ll~a~~ 472 (535)
...+.+|.
T Consensus 271 ~~a~~a~~ 278 (280)
T PRK09687 271 TKAIDKLK 278 (280)
T ss_pred HHHHHHHh
Confidence 66666654
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.84 E-value=6.2 Score=21.00 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=7.8
Q ss_pred HHHHHHHcCChhHHHHHH
Q 009424 393 MMSWYVKEGNFDKAEAFF 410 (535)
Q Consensus 393 li~~~~~~g~~~~A~~~~ 410 (535)
+...+...|++++|+.++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 339
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.49 E-value=43 Score=25.52 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=48.4
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLI 199 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (535)
...++|..+.+++...+ .....+.-..+..+.+.|++++|.. .......||...|-+|-. .+.|--+++..-+
T Consensus 20 HcH~EA~tIa~wL~~~~---~~~E~v~lIr~~sLmNrG~Yq~ALl--~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG---EMEEVVALIRLSSLMNRGDYQEALL--LPQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTT---TTHHHHHHHHHHHHHHTT-HHHHHH--HHTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHHHH--hcccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 35678888888888876 2333444444556677788888833 333333478888877654 3677777777777
Q ss_pred HHHHHCC
Q 009424 200 DKMRDKG 206 (535)
Q Consensus 200 ~~m~~~g 206 (535)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7776665
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=70.77 E-value=59 Score=32.80 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=10.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 009424 323 LLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m 343 (535)
++.-|.+.+++++|+.++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444444555555555555444
No 341
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.09 E-value=5.9 Score=31.38 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=25.8
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLY 221 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 221 (535)
+.|.-.+|-.+|.+|.++|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44677889999999999998886 488888754
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.67 E-value=60 Score=26.53 Aligned_cols=21 Identities=5% Similarity=0.102 Sum_probs=12.5
Q ss_pred HHHcCCHhHHHHHHHHHHHCC
Q 009424 186 YVRARMRGNAELLIDKMRDKG 206 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g 206 (535)
+.+.|++++|.++|++..+.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccC
Confidence 345666666666666665553
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.70 E-value=98 Score=28.55 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 286 STMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
+.....|..+|.+.+|.++.++...-. +.+...|-.++..++..|+--.+..-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444456777777777777777765432 23556677777777777776666666666543
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.69 E-value=11 Score=20.97 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=8.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 009424 326 LYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~ 345 (535)
++.+.|++++|.+.|+++..
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 33344444444444444444
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.39 E-value=16 Score=20.53 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788888888888888887765
No 346
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=68.29 E-value=77 Score=27.17 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=50.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCC-------------CC
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK-------------AV 278 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~ 278 (535)
+.|-.....-++.-..+++-+.| =..+-.+++-.|-+.-++.+++++++.|.+.. +.
T Consensus 108 vPFceFAetV~k~~q~~e~dK~~----------LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~ 177 (233)
T PF14669_consen 108 VPFCEFAETVCKDPQNDEVDKTL----------LGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKL 177 (233)
T ss_pred CCHHHHHHHHhcCCccchhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCcccc
Confidence 34555555555554444433322 11223466777888888888888888776420 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
.+--...|.-...+.++|.+|.|..++++
T Consensus 178 asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 178 ASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 23344556666777777777777777763
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.79 E-value=28 Score=32.59 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSY-DPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
-|.+.|.+++|...|...+.. .| |++++..-..+|.+..++..|+.-.+...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 455666666666666654332 22 55555555566666666655554444333
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.50 E-value=11 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=15.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCC
Q 009424 182 LLNAYVRARMRGNAELLIDKMRDKG 206 (535)
Q Consensus 182 li~~~~~~g~~~~A~~~~~~m~~~g 206 (535)
|..+|.+.|+.+.|++++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666666666666666666543
No 349
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.24 E-value=99 Score=28.07 Aligned_cols=211 Identities=13% Similarity=0.118 Sum_probs=133.3
Q ss_pred CCCCcCcchHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhcCCCHhHHHHHHHHhHhC----C
Q 009424 205 KGYAVHSLPYNVMMTLY-MKIKEYDEVESMVSEMKEKGIRLDV---YSYNIWLSSCGSQGSTEKMEGVFELMKVD----K 276 (535)
Q Consensus 205 ~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~pd~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~ 276 (535)
.+-.||+..=|..-..- .+...+++|+.-|...++..-.-.. .....++....+.|++++....+.++..- -
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567776655432221 2344789999999998875323233 33455788899999999999988887631 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cCCCcchH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 009424 277 AVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI-TGRDRVPY----HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT 351 (535)
Q Consensus 277 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 351 (535)
.-..+.-+.|++++.-+...+.+.-..+++.-.+.- -..|...| +.+-..|...+.+.+...+++++......-+
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 113345567888888777777777777666543221 11333333 4567778888888888888888876422211
Q ss_pred ----h-------hhHHHHHHHHHhcCCHhhHHHHHHHHHhcC-CCCCHHHHHHHH----HHHHHcCChhHHHH-HHHHHH
Q 009424 352 ----N-------LGYHAMISSLARIGDIEGMEKIFEEWLSVK-SSYDPRIANLMM----SWYVKEGNFDKAEA-FFNSII 414 (535)
Q Consensus 352 ----~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li----~~~~~~g~~~~A~~-~~~~m~ 414 (535)
. ..|..-|..|....+-..-..++++.+... --|.+.+...+- .+..+.|++++|-. +|+..+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 357777888888888888888888776433 224554443322 23456678887654 455554
Q ss_pred H
Q 009424 415 E 415 (535)
Q Consensus 415 ~ 415 (535)
.
T Consensus 260 N 260 (440)
T KOG1464|consen 260 N 260 (440)
T ss_pred c
Confidence 3
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.05 E-value=11 Score=20.01 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=16.4
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|..+...+...|++++|...|+...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555566666666777776666665
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.56 E-value=13 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=15.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
+..+|...|+.+.|+++++++.+.|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666677777777766666544
No 352
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=66.34 E-value=2.3e+02 Score=31.85 Aligned_cols=212 Identities=14% Similarity=0.089 Sum_probs=100.3
Q ss_pred CcCcchHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 208 AVHSLPYNVMMTLYMKIK--EYDEVESMVSEMKEKGIRLDVYS----------YNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 208 ~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~pd~~~----------~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
.|+ .-.-.+|..|++.+ .+++++....+.+.....++... -+.+.++..-.=|++.|..+-+.-.+
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~Sqk- 865 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQK- 865 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhcc-
Confidence 454 44556778888888 67788877777765221111110 12222222222344444444333322
Q ss_pred CCCCCCHHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 276 KAVNPNWTTFSTMATMYI-------------KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNL 342 (535)
Q Consensus 276 ~~~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (535)
|+.-|-.+++-+- ..+++++|+.-+.++ +...|.-.++.--++|.+.+|+.++..
T Consensus 866 -----DPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~-------~~~~~~e~~n~I~kh~Ly~~aL~ly~~ 933 (1265)
T KOG1920|consen 866 -----DPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC-------GETYFPECKNYIKKHGLYDEALALYKP 933 (1265)
T ss_pred -----ChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc-------CccccHHHHHHHHhcccchhhhheecc
Confidence 2222222222211 123444444444333 222344444444555666666655432
Q ss_pred HHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 009424 343 YRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS 422 (535)
Q Consensus 343 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 422 (535)
=.+. -...|.+..+-+...+.+++|--+|+..-+ ..--+.+|-.+|++.+|..+..++... .|.
T Consensus 934 ~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de 997 (1265)
T KOG1920|consen 934 DSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDE 997 (1265)
T ss_pred CHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHH
Confidence 1110 012344444445555666666666654311 112355666677777777766655431 122
Q ss_pred hH--HHHHHHHHHccccHHHHHHHHHHhH
Q 009424 423 TS--WETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 423 ~~--~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.. -..|+.-+...++.-+|-++..+..
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 11 2455666666677767666666555
No 353
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.01 E-value=91 Score=26.87 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHH-----HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHH
Q 009424 393 MMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWET-----LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINF 467 (535)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~l 467 (535)
+...+..+|++++|+.-++..... |....+.. |.+...+.|.+|+|+.+++... ..++.+ .....-
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~----~~~w~~--~~~elr 165 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK----EESWAA--IVAELR 165 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc----cccHHH--HHHHHh
Confidence 344566677777777776655532 22222322 3344566777777777777666 332221 112222
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCC
Q 009424 468 FKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
-.++...|+-++|+.-|+...+.+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 246677777777777777777766
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.80 E-value=1.6e+02 Score=29.53 Aligned_cols=398 Identities=9% Similarity=0.039 Sum_probs=202.1
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKG-GRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
|+-.|..-|.-+-+.+.+. +.-.+|.+|+.. +..||.+.+. ...-+-....++.|+.++...++.. +-++..+.
T Consensus 104 D~~lW~~yi~f~kk~~~~~-~v~ki~~~~l~~Hp~~~dLWI~a-A~wefe~n~ni~saRalflrgLR~n---pdsp~Lw~ 178 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYG-EVKKIFAAMLAKHPNNPDLWIYA-AKWEFEINLNIESARALFLRGLRFN---PDSPKLWK 178 (568)
T ss_pred CHHHHHHHHHHHHHhcchh-HHHHHHHHHHHhCCCCchhHHhh-hhhHHhhccchHHHHHHHHHHhhcC---CCChHHHH
Confidence 7778999988888888888 999999999875 4566766653 3344444555899999998888765 22333333
Q ss_pred HHHHHHHhh-CCHhhHHHHHhhCCCCC-----CCHHHHHHHHH------HHHHc---------CCHhHH-HHHHHHHHHC
Q 009424 148 IQLDLIAKV-HGVASAEDFFLSLPDTL-----KDRRVYGALLN------AYVRA---------RMRGNA-ELLIDKMRDK 205 (535)
Q Consensus 148 ~li~~~~~~-g~~~~A~~~f~~~~~~~-----~~~~~~~~li~------~~~~~---------g~~~~A-~~~~~~m~~~ 205 (535)
..+++-... .....=++.+....... .-...|+.... +..+. ....+- ..+.+.+..
T Consensus 179 eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~- 257 (568)
T KOG2396|consen 179 EYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQS- 257 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhc-
Confidence 222211100 00000011111111000 00111211111 11111 111111 111222222
Q ss_pred CCCcCcchHHHHHH----HHHhc---------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC------
Q 009424 206 GYAVHSLPYNVMMT----LYMKI---------------KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG------ 260 (535)
Q Consensus 206 g~~p~~~~~~~li~----~~~~~---------------g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g------ 260 (535)
+.+-++.+|.-+.. .+.+. .+-+....+|++..+. -|....|+..|..|...-
T Consensus 258 ~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~ 335 (568)
T KOG2396|consen 258 KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGK 335 (568)
T ss_pred cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhh
Confidence 22345555544322 22111 1122334555555443 345555666666654422
Q ss_pred CHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcC-CHH-HHH
Q 009424 261 STEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVG-KKE-EVY 337 (535)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~-~a~ 337 (535)
.+.....+++...+..+..++ ...|..+.-++.+.....+ +-..+...++.-+...|..-++...+.. +.+ .-.
T Consensus 336 ~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~---~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~ 412 (568)
T KOG2396|consen 336 RILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE---VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFE 412 (568)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH---HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHH
Confidence 344455566665554444443 3345555555555443322 2222222334456666665555554331 211 112
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcCC-HhhH--HHHHHHHHhcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHH
Q 009424 338 RVWNLYRSVFPGVTNLGYHAMISSLARIGD-IEGM--EKIFEEWLSVKSSYDPRIA-NLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a--~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m 413 (535)
.+|...+..-..+-...|++.. .++ ++.. ..++....+. ..|+..++ +.+++-+-+.|-..+|.+++..+
T Consensus 413 ~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l 486 (568)
T KOG2396|consen 413 ELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSL 486 (568)
T ss_pred HHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHH
Confidence 2233333321122112333333 122 2211 1222222222 34455544 67888889999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHH--ccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 414 IEEGGKPNSTSWETLAEGHI--RERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 414 ~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
... +.|+...|.-+|..=. ...+...+.++|+.|.. ..| .|+..|...+.-=...|..+.+-.++.+..+
T Consensus 487 ~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~---~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 487 QEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR---EFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH---HhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 885 4567888888875422 22347788899999985 456 6778888888777788888888777766554
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.52 E-value=1.3e+02 Score=28.52 Aligned_cols=122 Identities=9% Similarity=0.028 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---cccHHHHHHHHH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR---ERRILEALSCLK 446 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 446 (535)
.-+.+++++++.++ -+......++..+.+....++..+-|+++...... +...|...+..... .-.+++...+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34455555555543 25555666666666666666666666666654333 45556665554433 123344444444
Q ss_pred HhHHhcc--CCCC------CCC--HH---HHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 447 GAFAAEG--AKSW------RPK--PV---NVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 447 ~m~~~~~--~~g~------~p~--~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+..+... ..+. .|+ .. .+.-+...+...|-.+.|..+++-+++.++-
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 3331100 0111 111 11 2333333456788999999999999888763
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.45 E-value=42 Score=26.40 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=38.1
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhc
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR 135 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 135 (535)
+..+-++.+..-.+.|++......+++|.+.+|+..|..+++-+.-.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45556666677778899999999999999999999999999877643
No 357
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.41 E-value=1.2e+02 Score=27.95 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cccCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 009424 277 AVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES----RITGRDRVPYHY-LLSLYGSVGKKEEVYRVWNLYRSVFPGVT 351 (535)
Q Consensus 277 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 351 (535)
|-.-....|..+...|++.++.+.+.+...+..+ .|.+.|+....+ |.-.|....-+++-++..+.|.+.|.+.+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 3333445666667777777777776666555432 233333332111 11122333335666666667766666554
Q ss_pred h----hhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 352 N----LGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 352 ~----~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
. .+|-.+- +....++.+|-.++....
T Consensus 190 RrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 190 RRNRYKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhhhHHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 3 1232222 122344555555555544
No 358
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.24 E-value=35 Score=29.50 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
.|+..++..++..+...|+.++|.+...++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555554
No 359
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=64.20 E-value=1.3e+02 Score=28.37 Aligned_cols=81 Identities=11% Similarity=-0.011 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009424 227 YDEVESMVSEMKEKGI----RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~----~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (535)
.++|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+......++.+.+...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 4566777777666421 33445555666666666766655555555553 345666667777777777777777
Q ss_pred HHHHHHHhc
Q 009424 303 ESLRRVESR 311 (535)
Q Consensus 303 ~~~~~m~~~ 311 (535)
++++.....
T Consensus 222 ~~l~~~l~~ 230 (324)
T PF11838_consen 222 RLLDLLLSN 230 (324)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHcCC
Confidence 777766653
No 360
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.42 E-value=1.1e+02 Score=30.28 Aligned_cols=213 Identities=12% Similarity=0.005 Sum_probs=97.3
Q ss_pred HHHHccChHHHHHHHHHHHhcCCCcccCH--hHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHH--HHHHHHHHHHHcC
Q 009424 115 ELRKFRRYKHALEVYDWMNNRGERFRLSA--SDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRR--VYGALLNAYVRAR 190 (535)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~--~~~~li~~~~~~g 190 (535)
..+..|+.+.+..+ ++.| ..++. ....+.++..+..|+.+-+.-+++.-.. ++.. ...+-+...++.|
T Consensus 8 ~A~~~g~~~iv~~L----l~~g--~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRL----LDIG--INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI--PDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHH----HHCC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCcccHHHHHHHCC
Confidence 33455666554444 4456 33322 2234456666778888776666654332 2211 1123345556778
Q ss_pred CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhcCCCHhHHHHH
Q 009424 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS--YNIWLSSCGSQGSTEKMEGV 268 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~--~~~ll~~~~~~g~~~~a~~~ 268 (535)
+.+.+..+++.-....-..+..-+ +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 877665555432111000011112 233444455654 44555566676654322 12344455567777665555
Q ss_pred HHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 269 FELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVP---YHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
++.-.. .. ..|..-++ -+...+..|+.+-+ +.+.+.|..++... ..+.+...+..|+.+-+. .+.+
T Consensus 155 l~~g~~-~~-~~d~~g~T-pL~~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~----~Ll~ 223 (413)
T PHA02875 155 IDHKAC-LD-IEDCCGCT-PLIIAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR----LFIK 223 (413)
T ss_pred HhcCCC-CC-CCCCCCCC-HHHHHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHH----HHHH
Confidence 543210 00 11111222 23334455665543 33445666655432 123444344556654433 3334
Q ss_pred hCCCCc
Q 009424 346 VFPGVT 351 (535)
Q Consensus 346 ~~~~~~ 351 (535)
.|..++
T Consensus 224 ~gad~n 229 (413)
T PHA02875 224 RGADCN 229 (413)
T ss_pred CCcCcc
Confidence 455544
No 361
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.26 E-value=1e+02 Score=26.76 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=61.5
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDP----RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
+-+...|++++|..-|..++...+.... ..|..-..++.+.+.++.|+.-....++.++. .......-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3456789999999999988876544222 33444455777888888888887777775432 222233334577788
Q ss_pred ccHHHHHHHHHHhH
Q 009424 436 RRILEALSCLKGAF 449 (535)
Q Consensus 436 g~~~~A~~~~~~m~ 449 (535)
..+++|++=|+++.
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 88999999999988
No 362
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.84 E-value=2.1e+02 Score=30.36 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=65.6
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDTLK---DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 226 (535)
++-+.+.+.+++|.+.-+......+ -..++...|..+.-.|++++|-.+.-.|... +..-|.-.+.-+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 5566777788888888877766533 3457888888888888888888888877765 46667776666666665
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS 258 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 258 (535)
......+ +.......+..+|..++-.+..
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 5443322 2222222344556666555554
No 363
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.63 E-value=69 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777776655
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.10 E-value=2e+02 Score=29.83 Aligned_cols=156 Identities=12% Similarity=0.024 Sum_probs=88.9
Q ss_pred HHHcCCHhHHHHHHHHHHH-------CCCCcCcchHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009424 186 YVRARMRGNAELLIDKMRD-------KGYAVHSLPYNVMMTLYMKIK-----EYDEVESMVSEMKEKGIRLDVYSYNIWL 253 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~pd~~~~~~ll 253 (535)
+....+++.|+..|....+ .| +....+-+...|.+.. +.+.|+.++...-+.|. |+...+-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3455677777777777765 55 4456667777777643 56678888888888773 4555544444
Q ss_pred HHHhc-CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc
Q 009424 254 SSCGS-QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI--KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330 (535)
Q Consensus 254 ~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (535)
..... -.+...|.++|....+. |. ++..-+-+++-... ...+.+.|..++.+..+.| .|...--...+..+..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~-G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKA-GH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHc-CC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 33333 34677888888888753 32 22222222221111 2346778888888877765 2222222222333333
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 009424 331 GKKEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~ 349 (535)
+.++.+...+..+...+..
T Consensus 411 ~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYE 429 (552)
T ss_pred ccccHHHHHHHHHHHhhhh
Confidence 6666666666666554433
No 365
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.59 E-value=3.8e+02 Score=32.83 Aligned_cols=316 Identities=11% Similarity=0.008 Sum_probs=170.1
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhc
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 224 (535)
+..+-.+|+.+..|...+++-... .....-|-.+...|+.-+++|....+...-.. ..+...-|.-....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHHHHHHHHhh
Confidence 344667889999999999883221 11223445555589999999988887765211 12344556667788
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM-ATMYIKMGQVEKAEE 303 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 303 (535)
|+++.|...|+.+.+.+ ++...+++-++......|.++......+..... ..+....|+++ +.+-.+.++++....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 99999999999999875 334667777777777788888888777666542 23344444433 334466777777666
Q ss_pred HHHHHHhcccCCCcchHHHH--HHHHHhc--CCHHHHHHHHHHHHhhCCCCch---------hhHHHHHHHHHhcCCHhh
Q 009424 304 SLRRVESRITGRDRVPYHYL--LSLYGSV--GKKEEVYRVWNLYRSVFPGVTN---------LGYHAMISSLARIGDIEG 370 (535)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~m~~~~~~~~~---------~~~~~ll~~~~~~g~~~~ 370 (535)
... ..+..+|... .....+. .+.-.-.+..+.+++.-+.+-. ..|..++....-. +
T Consensus 1540 ~l~-------~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----e 1608 (2382)
T KOG0890|consen 1540 YLS-------DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----E 1608 (2382)
T ss_pred hhh-------cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----H
Confidence 554 1344455444 2222222 1211122233333332111100 1122222221111 1
Q ss_pred HHHHHHHHHhcCCCCCH------HHHHHHHHHHHHcCChhHHHHHHHH-HHHcCCCC-----CHhHHHHHHHHHHccccH
Q 009424 371 MEKIFEEWLSVKSSYDP------RIANLMMSWYVKEGNFDKAEAFFNS-IIEEGGKP-----NSTSWETLAEGHIRERRI 438 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~p-----~~~~~~~li~~~~~~g~~ 438 (535)
-....+.. .+..++. .-|-.-+..-....+..+-.--+++ +......| -..+|-...+....+|++
T Consensus 1609 l~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1609 LENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 11111111 1112211 1121122111111112221111221 11111122 245677788888889999
Q ss_pred HHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 439 LEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+.|...+-.+. +.+ .| ..+.--..-....|+...|..+++..++....
T Consensus 1687 q~A~nall~A~----e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1687 QRAQNALLNAK----ESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHhhh----hcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99998887777 444 33 34555566778889999999999988865443
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.25 E-value=1.9e+02 Score=29.17 Aligned_cols=182 Identities=13% Similarity=0.045 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHH
Q 009424 243 RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHY 322 (535)
Q Consensus 243 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 322 (535)
..|.....+++..++.+-.+.-...+..+|..- .-+-..+-.++..|..+ ..+.-..+|+++.+..+ -|++.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 347777888999999999999999999999852 45777899999999998 56778889998876533 23444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hhHHHHHHHHHhcCCHhhHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-----LGYHAMISSLARIGDIEGMEKIFEEWLSV-KSSYDPRIANLMMSW 396 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 396 (535)
+..-| ..++.+.+..+|.+.....+.... ..|.-+.... ..+.+....+...+... |...-...+.-+-.-
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44444 448899999999988765333111 2344444321 34566666666666543 333345556666678
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 397 YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
|....++++|++++..+.+.+-+ |...-..++.-+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~lR 250 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIENLR 250 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHHH
Confidence 88899999999999988876444 5555555555443
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.60 E-value=39 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=8.7
Q ss_pred HHHHHHHHHccccHHHHHH
Q 009424 425 WETLAEGHIRERRILEALS 443 (535)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~ 443 (535)
+..++.+|+..|+++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444454444443
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.60 E-value=65 Score=30.08 Aligned_cols=54 Identities=4% Similarity=0.036 Sum_probs=25.1
Q ss_pred HHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009424 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL 305 (535)
Q Consensus 252 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (535)
|.-+..+.|+..+|.+.|+.+.++..+..-..+...||.++....-+.+...++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567777777777766654211111112234555554444444444433
No 369
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.52 E-value=44 Score=21.14 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=16.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWL 253 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll 253 (535)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 370
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.37 E-value=77 Score=32.75 Aligned_cols=75 Identities=11% Similarity=0.247 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHH----HHHcCCCCCHhHHHHHHH
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVK--SSYDPRIANLMMSWYVKEGNFDKAEAFFNS----IIEEGGKPNSTSWETLAE 430 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~li~ 430 (535)
+++.+|...|++..+.++++...... -+.-...+|..|+-..+.|.++- .++.+. +....+.-|..||..|+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l-~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL-TDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 77788888888888888877776532 12224456666777777775542 222222 222334445555555544
Q ss_pred HH
Q 009424 431 GH 432 (535)
Q Consensus 431 ~~ 432 (535)
+-
T Consensus 112 ~s 113 (1117)
T COG5108 112 AS 113 (1117)
T ss_pred hh
Confidence 43
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.85 E-value=15 Score=24.83 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 459 PKPVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 459 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
-|..--..++.++...|++++|.++++.+.
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455566666667777777776666654
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.23 E-value=2.6e+02 Score=29.62 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=52.5
Q ss_pred ChhHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009424 226 EYDEVESMVSEMKEKG-IRLDV--YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302 (535)
Q Consensus 226 ~~~~a~~~~~~m~~~g-~~pd~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (535)
+.+.|..++....... +.+.. .++..+....+..+..+++...++..... ..|......-+..-.+.++++.+.
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHH
Confidence 4456666666553332 22111 12222322222222244455555544321 123333444444445667777777
Q ss_pred HHHHHHHhcccCCCcchHH-HHHHHHHhcCCHHHHHHHHHHH
Q 009424 303 ESLRRVESRITGRDRVPYH-YLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m 343 (535)
..+..|..... +...|. -+..++...|+.++|...|+..
T Consensus 333 ~~i~~L~~~~~--~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEAK--EKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhhc--cCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77766633211 122222 2345555567777777777765
No 373
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.08 E-value=2.6e+02 Score=29.49 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCCH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE-------YDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~pd~ 246 (535)
+..+| ++|--+.++|++++|.++..+.... .......+-..+..|....+ -+....-|++..+.....|.
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 34456 4667788999999999998555443 34455677888888876532 23455555655554332244
No 374
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.97 E-value=2e+02 Score=27.95 Aligned_cols=59 Identities=12% Similarity=-0.048 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 009424 146 AAIQLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMRGNAELLIDKMRD 204 (535)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 204 (535)
+.-+.+.|..||+++.|.+.+.+..+- ...+..|-.+|..-.-.|+|........+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 444566677777777777777664332 11233455555555555666555555544433
No 375
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.84 E-value=60 Score=33.77 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
-.-++..|.+.|-.+.|.++.+.+-.+-.. ..-|..-+..+.+.|+...+..+-..+
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555555544332211 123444444455555544444444333
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.35 E-value=1.3e+02 Score=30.81 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHH
Q 009424 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
.|+...|...+.......+.-..+....+.+...+.|....|..++.+..... .....++..+.+++.-..+++.|.+.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34555555554444322222223333344444445555555555555444432 11223444555555555555555555
Q ss_pred HHHHHhcC
Q 009424 375 FEEWLSVK 382 (535)
Q Consensus 375 ~~~~~~~~ 382 (535)
|+.+.+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 55555443
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.33 E-value=37 Score=24.74 Aligned_cols=14 Identities=0% Similarity=0.083 Sum_probs=6.3
Q ss_pred CChhHHHHHHHHHH
Q 009424 225 KEYDEVESMVSEMK 238 (535)
Q Consensus 225 g~~~~a~~~~~~m~ 238 (535)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.47 E-value=1.1e+02 Score=26.19 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHhH-------HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC
Q 009424 403 FDKAEAFFNSIIEEGGKPNSTS-------WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES 475 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p~~~~-------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g 475 (535)
++.|+.+|+.+.+.-..|+... -...+..|.+.|.+++|.+++++.. + .|+......-+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~------~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF------S-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh------c-CCCchhHHHHHHHHHHcc
Q ss_pred C
Q 009424 476 D 476 (535)
Q Consensus 476 ~ 476 (535)
|
T Consensus 158 d 158 (200)
T cd00280 158 D 158 (200)
T ss_pred c
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.17 E-value=64 Score=27.81 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=19.4
Q ss_pred CCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 419 KPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|+...|..++..+...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666666666665
No 380
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.97 E-value=1.3e+02 Score=24.65 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc------CCCCCHhHHHHHHHHHHcccc-HHHHHHHHHHhHHhccCCCCCCCHHH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSIIEE------GGKPNSTSWETLAEGHIRERR-ILEALSCLKGAFAAEGAKSWRPKPVN 463 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~g~~p~~~~ 463 (535)
|.++.-.+..+++.-...+++.+.-. | ..+..+|.+++.+..+..- ---+..+|+-++ +.+.++++.-
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~-~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk----~~~~~~t~~d 117 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIG-WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK----KNDIEFTPSD 117 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhh-hcccchHHHHHHHHccChHHHHHHHHHHHHHH----HcCCCCCHHH
Confidence 44444444444444444444444211 1 1266678888888866555 345677888888 6678888888
Q ss_pred HHHHHHHHHhc
Q 009424 464 VINFFKACEEE 474 (535)
Q Consensus 464 ~~~ll~a~~~~ 474 (535)
|..++.+|.+.
T Consensus 118 y~~li~~~l~g 128 (145)
T PF13762_consen 118 YSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHcC
Confidence 99898888775
No 381
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.26 E-value=22 Score=28.32 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009424 84 DNPQLGSASVLNDWEKGGRSLTKWELCRVVKEL 116 (535)
Q Consensus 84 g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (535)
|.-. +|-.+|..|+.+|-.||... .|+..+
T Consensus 109 gsk~-DaY~VF~kML~~G~pPddW~--~Ll~~a 138 (140)
T PF11663_consen 109 GSKT-DAYAVFRKMLERGNPPDDWD--ALLKEA 138 (140)
T ss_pred ccCC-cHHHHHHHHHhCCCCCccHH--HHHHHh
Confidence 5666 89999999999999998764 566544
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.64 E-value=38 Score=22.87 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009424 287 TMATMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m 308 (535)
.+|.+|...|++++|.++.+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555555555555555444
No 383
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.47 E-value=2.8e+02 Score=28.25 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=11.8
Q ss_pred HHHHHhcCCCHhHHHHHHHHhH
Q 009424 252 WLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 252 ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
++.-|.+.+++++|..++..|.
T Consensus 414 L~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCC
Confidence 4445555555555555555554
No 384
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.18 E-value=1.8e+02 Score=25.98 Aligned_cols=19 Identities=0% Similarity=0.093 Sum_probs=10.8
Q ss_pred HhcCCHHHHHHHHHHHHhh
Q 009424 328 GSVGKKEEVYRVWNLYRSV 346 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~ 346 (535)
+..+++.+|+.+|+++-..
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665543
No 385
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.08 E-value=1.8e+02 Score=25.91 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=23.4
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKM 202 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 202 (535)
++..+...|+...|..++........+....+.++.. ..++.+.+|...-+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 4444444555555555555544322222222332333 4445555555544443
No 386
>PF15469 Sec5: Exocyst complex component Sec5
Probab=50.63 E-value=1.4e+02 Score=25.48 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=20.4
Q ss_pred CChhhHHHHHHHHhcCCCCChhhHHHH
Q 009424 475 SDMGSKEAFVALLRQPGYRKEKDYMSL 501 (535)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~~~~~L 501 (535)
...++..+++..+.+.++.++++|.+|
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 457777788888888888887776655
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.59 E-value=62 Score=20.43 Aligned_cols=13 Identities=8% Similarity=0.463 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHcC
Q 009424 405 KAEAFFNSIIEEG 417 (535)
Q Consensus 405 ~A~~~~~~m~~~~ 417 (535)
++..++++|.+.|
T Consensus 20 ~~~~~l~~l~~~g 32 (48)
T PF11848_consen 20 EVKPLLDRLQQAG 32 (48)
T ss_pred hHHHHHHHHHHcC
Confidence 3333333333333
No 388
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.69 E-value=2e+02 Score=25.89 Aligned_cols=118 Identities=9% Similarity=0.021 Sum_probs=53.3
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHcCChh
Q 009424 327 YGSVGKKEEVYRVWNLYRSVFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANL-MMSWYVKEGNFD 404 (535)
Q Consensus 327 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~ 404 (535)
|....+++.|+..|.+... ..|+. .-|..=+..+.+..+++.+.+=-...++ +.||..--.. +-.+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3344456666665554444 33333 2234444455555666555544443332 3344333222 333444455566
Q ss_pred HHHHHHHHHHH----cCCCCCHhHHHHHHHHHHccccHHHHHHHHHHh
Q 009424 405 KAEAFFNSIIE----EGGKPNSTSWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 405 ~A~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
+|+..+.+... ..+.|-...+..|..+=-+.-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 66666655532 223333444444444433333333444444433
No 389
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.47 E-value=31 Score=18.80 Aligned_cols=28 Identities=4% Similarity=-0.026 Sum_probs=16.1
Q ss_pred CChhhHHHHHHHHhcCCCCChhhHHHHH
Q 009424 475 SDMGSKEAFVALLRQPGYRKEKDYMSLI 502 (535)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~~~~~~~~L~ 502 (535)
|+.+.+..+++++++..+.....|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4556667777777665554444554443
No 390
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=49.09 E-value=4e+02 Score=29.30 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
|..+|..-..-+...|++-.|++++.++.+ +.|-.++...|..++..|...| |.....+++.+.
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~klie---e~~es~t~~~~~~~~el~~~Lg-w~H~~t~~~~~~ 1293 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIE---ENGESATKDVAVLLAELLENLG-WNHLATFVKNWM 1293 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHH---hccccchhHHHHHHHHHHHHhC-chHhHHHHhhhe
Confidence 455555555556666777777777777764 4455566666666655555555 334444444443
No 391
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.56 E-value=1e+02 Score=25.15 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCC
Q 009424 92 SVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHG 158 (535)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~ 158 (535)
.+...+.+.|.+++.--. .+++.+...++.-.|.++|+.+.+.+ ...+..+.-..++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~--p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEG--PGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCHhHHHHHHHHHHHCCC
Confidence 344556667887776553 67888888877788999999999888 55555555555566666653
No 392
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.34 E-value=99 Score=25.26 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=41.0
Q ss_pred HHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 009424 197 LLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG 260 (535)
Q Consensus 197 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g 260 (535)
++...+.+.|++++.. -..++..+.+.++.-.|.++|+++.+.+...+..|.-..++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445566677766433 45667777777777888888888888776655555444455666555
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=48.32 E-value=3.5e+02 Score=28.47 Aligned_cols=193 Identities=11% Similarity=0.032 Sum_probs=108.8
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHh-CCCCC--CHHHHHHHHHHHH-HccChHHHHHHHHHHHhcCCCcccC--
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEK-GGRSL--TKWELCRVVKELR-KFRRYKHALEVYDWMNNRGERFRLS-- 142 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~-~g~~p--~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~-- 142 (535)
++..|..||+ .|+..++-..+ ....| +..++-.+.+.+. ...++++|...+++...........
T Consensus 29 ~l~~Y~kLI~----------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 29 QLKQYYKLIA----------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hHHHHHHHHH----------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 3456666665 55666666653 23334 3334555556555 6788999999999776543111111
Q ss_pred -HhHHHHHHHHHHhhCCHhhHHHHHhhCCCC--C--CCHH--HHHHH-HHHHHHcCCHhHHHHHHHHHHHCC---CCcCc
Q 009424 143 -ASDAAIQLDLIAKVHGVASAEDFFLSLPDT--L--KDRR--VYGAL-LNAYVRARMRGNAELLIDKMRDKG---YAVHS 211 (535)
Q Consensus 143 -~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~--~~~~--~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~ 211 (535)
-.....++..|.+.+... |.+..++..+. . -+.. .+.-+ +..+...+++..|.+.++.+...- -.|-+
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 122334566676666655 88877775443 1 1122 22222 233334489999999998876532 12334
Q ss_pred chHHHHHHHHH--hcCChhHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHh--cCCCHhHHHHHHHHh
Q 009424 212 LPYNVMMTLYM--KIKEYDEVESMVSEMKEKGI---------RLDVYSYNIWLSSCG--SQGSTEKMEGVFELM 272 (535)
Q Consensus 212 ~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~---------~pd~~~~~~ll~~~~--~~g~~~~a~~~~~~~ 272 (535)
..+-.++.+.. +.+..+++++..+++..... .|-..+|..+++.++ ..|+++.+.+.++++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444555444 34556777777777744221 345667777776654 567766666655544
No 394
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.56 E-value=1.7e+02 Score=27.37 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 287 TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
.++..+.+.++.....+.+..+. ....-...++.....|++..|+++..+....--.. ..|.++=..-.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l--~~~~c~~~L~~--- 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL--KGYSCVRHLSS--- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--ccchHHHHHhH---
Confidence 34455555566655555555553 23334455667778888888888888776531111 11111111111
Q ss_pred CHhhHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 367 DIEGMEKIFEEWLS-----VKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 367 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
++++-......+.+ .-...|+..|..+..+|.-.|+...+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 12222222222211 111346777777777777777655544
No 395
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.38 E-value=47 Score=21.60 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=10.4
Q ss_pred HHHHHccccHHHHHHHHHHhH
Q 009424 429 AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~ 449 (535)
.-++.+.|++++|.+..+.+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555555555555
No 396
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.96 E-value=52 Score=21.39 Aligned_cols=30 Identities=3% Similarity=-0.030 Sum_probs=23.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+.-++.+.|+++.|++..+.+++..|.+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 445788999999999999999998887755
No 397
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.75 E-value=2.2e+02 Score=25.55 Aligned_cols=127 Identities=16% Similarity=0.314 Sum_probs=76.8
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCC-----------CCCHhH
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE-EGG-----------KPNSTS 424 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~-----------~p~~~~ 424 (535)
+.+--|.+..+.+--.++.+-....++..+..-..+++ +...|+...|+.-++.-.. .|. .|.+..
T Consensus 164 CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~ 241 (333)
T KOG0991|consen 164 CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLL 241 (333)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHH
Confidence 34444566666655566666555566665555555544 4557888888887776554 332 355666
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHH-HHHHhcCCCCC
Q 009424 425 WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAF-VALLRQPGYRK 494 (535)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~~~~ 494 (535)
...++..|. .+++++|.+.+++.. +.|+.|.. ..+++.+++... +-++.+ ++.+.+.|+..
T Consensus 242 v~~ml~~~~-~~~~~~A~~il~~lw----~lgysp~D-ii~~~FRv~K~~---~~~E~~rlE~ikeig~th 303 (333)
T KOG0991|consen 242 VKKMLQACL-KRNIDEALKILAELW----KLGYSPED-IITTLFRVVKNM---DVAESLRLEFIKEIGLTH 303 (333)
T ss_pred HHHHHHHHH-hccHHHHHHHHHHHH----HcCCCHHH-HHHHHHHHHHhc---cHHHHHHHHHHHHHhhHH
Confidence 666666654 467899999999988 78888754 344555665543 333333 24445556553
No 398
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.91 E-value=1.6e+02 Score=31.85 Aligned_cols=100 Identities=12% Similarity=0.124 Sum_probs=54.4
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (535)
++|.-+.+.|-.+-|+.+.+.=..+.+ ....+|+++.|++.-..+ -|..+|..|...-...
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tRF~-------------LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTRFE-------------LALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchhee-------------eehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh
Confidence 344445556666655554443332211 144567777776665544 3555677777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
|+.+-|...|++.+. |..|--.|.-.|+.++-.++.+.+
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 777777666666544 222222344456666655555544
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.64 E-value=1.8e+02 Score=30.19 Aligned_cols=45 Identities=4% Similarity=-0.050 Sum_probs=22.7
Q ss_pred HHHHHHHhhCCHhhHHHHHhhCCCC----CCCHHHHHHHHHHHHHcCCH
Q 009424 148 IQLDLIAKVHGVASAEDFFLSLPDT----LKDRRVYGALLNAYVRARMR 192 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~ 192 (535)
+++.+|...|++-.+..+++..... ..=...+|..|..+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555555556655555555554432 11233455555555555543
No 400
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=45.37 E-value=1.3e+02 Score=28.38 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=53.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 325 SLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
.-|.+.|.+++|++.|..-....+. +.+++..-..+|.+...+..|+.=-...+..+ ...+.+|.+.+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHHH
Confidence 4589999999999999987764332 55788888889999998887776555544321 23566666665444
Q ss_pred HHHHHHHH
Q 009424 405 KAEAFFNS 412 (535)
Q Consensus 405 ~A~~~~~~ 412 (535)
+++....+
T Consensus 176 ~~Lg~~~E 183 (536)
T KOG4648|consen 176 ESLGNNME 183 (536)
T ss_pred HHHhhHHH
Confidence 44444333
No 401
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.08 E-value=2.1e+02 Score=24.89 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 240 (535)
..+.++..|...|+++.|-++|.-+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3455556666666666666666665554
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.36 E-value=47 Score=30.71 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=25.0
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcccCC
Q 009424 279 NPNWTT-FSTMATMYIKMGQVEKAEESLRRVESRITGR 315 (535)
Q Consensus 279 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 315 (535)
.||... |+..|..-.+.||+++|+.++++.++.|..-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 344443 5677777777777777777777777766653
No 403
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.33 E-value=1.4e+02 Score=22.62 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=29.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+...|++++|..+.+.+ ..||...|-++-.. +.|..+++..-+.+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 3455667777777666554 35677777665432 5555565555555555
No 404
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.20 E-value=77 Score=24.46 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=36.7
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChH
Q 009424 75 AIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYK 123 (535)
Q Consensus 75 ~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 123 (535)
.++..+...+.+. .|-++++.+.+.+..++..|.-..|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~-sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHL-TAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCC-CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 4566666666777 88899999988887788888778888888777544
No 405
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.15 E-value=4.3e+02 Score=28.27 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=69.3
Q ss_pred HHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCH
Q 009424 113 VKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMR 192 (535)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 192 (535)
++.+.+.+.+++|+..-......-..+ ....+....|+.+...|++++|-...-.|.. -+..-|.--+..++..++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhcccccc
Confidence 456677778888887765544332111 2456777888999999999999888888877 6777788777777777765
Q ss_pred hHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 193 GNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
.....+ ++...-..+...|..++..+..
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 543332 3322212345567777777766
No 406
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.73 E-value=3.6e+02 Score=28.38 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 460 KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 460 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+......++.++.. |+...+.++++.+.+.|..+......|+..+
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~il~~l~~~~ 294 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAASTLEEMAAVL 294 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33444445555444 6677777777777777776666555555554
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.30 E-value=50 Score=30.56 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIR 243 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 243 (535)
||..|....+.|++++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345566666666666666666666666543
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.47 E-value=96 Score=22.92 Aligned_cols=21 Identities=0% Similarity=-0.262 Sum_probs=11.1
Q ss_pred HHHhcCChhhHHHHHHHHhcC
Q 009424 470 ACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 470 a~~~~g~~~~a~~~~~~~~~~ 490 (535)
.....|.+++|.+.+++.++.
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 344455566665555555433
No 409
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=42.41 E-value=1.1e+02 Score=23.63 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=28.7
Q ss_pred HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHH
Q 009424 111 RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLI 153 (535)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~ 153 (535)
+++.-+.+....++|+++.+++.++| ..+....+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G---EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG---EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 45666677788899999999999998 55665555544333
No 410
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.83 E-value=1.9e+02 Score=29.60 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=64.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 408 (535)
..|+...|...+.......+.-..+....+.....+.|...+|-.++.+.+.... ..+-++-.+.++|.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHH
Confidence 3577777777777665544444445566666777777777777777776665552 255666777778888888888888
Q ss_pred HHHHHHHcCCCCCHhHHHHHH
Q 009424 409 FFNSIIEEGGKPNSTSWETLA 429 (535)
Q Consensus 409 ~~~~m~~~~~~p~~~~~~~li 429 (535)
.|+...+...+ +.+.-+.|.
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHH
Confidence 88877765443 444444443
No 411
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.61 E-value=5.7e+02 Score=28.96 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=87.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----------------------ccCCC-----cchHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 291 MYIKMGQVEKAEESLRRVESR-----------------------ITGRD-----RVPYHYLLSLYGSVGKKEEVYRVWNL 342 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~-----------------------g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (535)
+|..+|...+|++.|.+.... |-.|. ..=|-.+++.+-+.+..+++.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 366778888888888776431 11111 11245667777777888888777766
Q ss_pred HHhhCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCChhH----------
Q 009424 343 YRSVFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP----RIANLMMSWYVKEGNFDK---------- 405 (535)
Q Consensus 343 m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~---------- 405 (535)
..+.-+.-+. .+++++.+-....|.+-+|...+-. .||. .....++-.++.+|+++.
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 6553222111 4667777777788887777665543 2343 234556777777777543
Q ss_pred --HHH-HHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHH-HHHhH
Q 009424 406 --AEA-FFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSC-LKGAF 449 (535)
Q Consensus 406 --A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~ 449 (535)
... +++..-...+.-....|+.|-.-+...+++.+|-.+ |+...
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 333 222222222222334566666667777777776554 44444
No 412
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.54 E-value=3.6e+02 Score=26.68 Aligned_cols=104 Identities=12% Similarity=0.035 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKA 470 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a 470 (535)
..|+.-|...|.+.+|.+.++++----+ -..+.+.+++.+.-+.|+-...+.+++... ..|+ .|-+.+-++
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf----~sgl----IT~nQMtkG 583 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECF----KSGL----ITTNQMTKG 583 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hcCc----eeHHHhhhh
Confidence 4466667777777777777665432111 145667777777777777666777777666 4443 233444444
Q ss_pred HHhcC--------ChhhHHHHHHHHhcCCCCChhhHHHHHH
Q 009424 471 CEEES--------DMGSKEAFVALLRQPGYRKEKDYMSLIG 503 (535)
Q Consensus 471 ~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~L~~ 503 (535)
|.+.. |+..|.+.|+...+.+......+-.|-+
T Consensus 584 f~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~i~~~l~~ 624 (645)
T KOG0403|consen 584 FERVYDSLPDLSLDVPNAYEKFERYVEECFQNGIISKQLRD 624 (645)
T ss_pred hhhhhccCcccccCCCcHHHHHHHHHHHHHHcCchhHHhhh
Confidence 43321 2344455555554444444333333333
No 413
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.95 E-value=2.4e+02 Score=24.37 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=24.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcc--cCCCcchHHHHHH-HHHhcCC--HHHHHHHHHHHHh
Q 009424 292 YIKMGQVEKAEESLRRVESRI--TGRDRVPYHYLLS-LYGSVGK--KEEVYRVWNLYRS 345 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~ 345 (535)
....|++++|..-++++.+.- ++.-...|..+.. +++..+. +-+|..++.-...
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 444566666666665553310 1112223444433 4444443 4455555554443
No 414
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.87 E-value=3.2e+02 Score=25.83 Aligned_cols=135 Identities=17% Similarity=0.128 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cccCCCc
Q 009424 242 IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES----RITGRDR 317 (535)
Q Consensus 242 ~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~~ 317 (535)
++.|...++++..+ +..++++--+..+...+..|-.--...+-.....|++-||.+.|.+.+....+ -|.+-|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555544432 12223333333334443323222334566667778888888888887776533 3566666
Q ss_pred chHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCch----hhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 318 VPYHYLLSL-YGSVGKKEEVYRVWNLYRSVFPGVTN----LGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 318 ~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
+.+..-+.. |....-+.+-++..+.+.+.|.+.+. .+|-.+- |....++.+|-.+|-....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 655443332 33334456666666677777776654 2333332 3345677888777776654
No 415
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.77 E-value=1.1e+02 Score=21.89 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=26.4
Q ss_pred HHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHH
Q 009424 111 RVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ 149 (535)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~l 149 (535)
+++.-+.+..-.++|+++++.+.++| ..+....+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG---Ei~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG---EITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 56666777788889999999999998 5555544433
No 416
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.50 E-value=3e+02 Score=25.43 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHH-------HHHHHHHhcCCHHHH
Q 009424 288 MATMYIKMGQVEKAEESLRRVESRITGRDRVPYH-------YLLSLYGSVGKKEEV 336 (535)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-------~li~~~~~~g~~~~a 336 (535)
+.+-..+.+++++|...+.++...|+..|..+.| .+...|...|+...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 3344566778888888888888888776655433 344555555554433
No 417
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.35 E-value=1.3e+02 Score=29.65 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=34.9
Q ss_pred HHHHHHHHhHHhccCCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 440 EALSCLKGAFAAEGAKSWRPKPV--NVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
..+++-.-+- ...++|.+. ++...+..+.+.+++..|..+.+++++.++.+..
T Consensus 281 R~lELAAYFT----hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 281 RNLELAAYFT----HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHHHC----CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 4445555555 556666554 5566777888889999999999999998887765
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.84 E-value=3.8e+02 Score=26.40 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 247 YSYNIWLSSCGSQGSTEKMEGVFELMKVDKA------VNPNWTTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
.+...|++..+-.||+..|.++++.+.-... ..-.+.++-.+.-+|...+++.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888889999999999887653211 11123456667778888899999999998864
No 419
>PRK10941 hypothetical protein; Provisional
Probab=39.72 E-value=3.1e+02 Score=25.29 Aligned_cols=57 Identities=11% Similarity=-0.083 Sum_probs=28.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+-.+|.+.++++.|+++.+.+....+. +..-+.--.-.|.+.|.+..|..=++...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444555555566666655555553322 33334444444555555555555554444
No 420
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=39.68 E-value=2.8e+02 Score=24.80 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=23.4
Q ss_pred ccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHH
Q 009424 434 RERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFK 469 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~ 469 (535)
..++...|+.+++++.++.++.|++-+.......|+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr 225 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGVKKDIERLERRLK 225 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Confidence 345778899999999866656666655444444443
No 421
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.47 E-value=2.8e+02 Score=24.84 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
..--+..|.+.-++.-|...++++.+ | ..+-.+ +--|.+..+..--.++.+-.+..++..+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 33456777777777777777766632 2 222222 223455555444445555555555555554444444 346
Q ss_pred cCCHhhHHHHHHHHHhc-C-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSV-K-----------SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
.|+..+|...++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|..|.- ..+.+.+.+
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 78898888888765431 1 1355655666665544 57899999999999999988643 333444433
No 422
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.46 E-value=3.2e+02 Score=25.51 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=12.8
Q ss_pred CHhHHHHHHHHHHccccHHHH
Q 009424 421 NSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A 441 (535)
...+|.-|+.+++..|+.+-.
T Consensus 320 hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHH
Confidence 445566666666666665544
No 423
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.16 E-value=2.3e+02 Score=27.70 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHhHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 247 YSYNIWLSSCGSQGSTEKMEGVFELMKVD-KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
.+..-|++...-.||.....+..+.+.+. .|-.|...+---+.-+|.-.|++.+|.+.|-...-. +......+...--
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly-Iqrtks~~~~~~y 314 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTTY 314 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhh
Confidence 33455677777788876667777766642 111222111133455677778888888888776432 1111111111111
Q ss_pred HHHh-cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH-------hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 326 LYGS-VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA-------RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 326 ~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
.|.. .+.++....++.-.....|..-..++.+.+.-++ .+|+.+.-+.+|......-..|.+..|..+..-|
T Consensus 315 ~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y 394 (525)
T KOG3677|consen 315 QYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNY 394 (525)
T ss_pred hHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCcccccccccc
Confidence 1111 1234444444444444333332244444443332 2355555555555444444445555555555544
Q ss_pred HH
Q 009424 398 VK 399 (535)
Q Consensus 398 ~~ 399 (535)
.+
T Consensus 395 ~k 396 (525)
T KOG3677|consen 395 HK 396 (525)
T ss_pred cc
Confidence 44
No 424
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=38.81 E-value=5.2e+02 Score=27.67 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=50.0
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
+.|+..+......++... .|++..|..+++++...|- |.+. .+....+. |. +
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~-----------------g~It--~e~V~~lL------G~-~ 244 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS-----------------GKVA--ENDVRQMI------GA-V 244 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC-----------------CCcC--HHHHHHHH------cc-c
Confidence 346666666555555433 4777777777766554220 1111 11222222 22 2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 460 KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 460 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+......++.++.. ++...+..+++.+.+.|..+......|+..+
T Consensus 245 d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l 289 (709)
T PRK08691 245 DKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNALGELAILL 289 (709)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23334444554444 6677777777777777776655444444433
No 425
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=38.55 E-value=5.8e+02 Score=28.17 Aligned_cols=133 Identities=12% Similarity=0.072 Sum_probs=74.3
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEG 267 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~ 267 (535)
+...-.+|..+-.+|... -+++|.++++.|..-.- ++.+... ..-|.. -.....+...+
T Consensus 1159 k~D~r~da~klk~~me~q--------k~tli~AL~kKg~a~ak---~e~l~g~-~e~dae---------ee~s~ld~~~e 1217 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEKQ--------KDTLIDALVKKGEAFAK---YEALKGH-KEQDAE---------EELSKLDSYNE 1217 (1304)
T ss_pred ccCCcchHHHHHHHHHHH--------HHHHHHHHHHhhhHHhh---hhhhccc-ccccch---------hhhhhhhhHHH
Confidence 333345577777777654 36788888877632211 1111111 111211 11133555566
Q ss_pred HHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 268 VFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES-RITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
.|.++.+-- -..|.-+|..-...+...|++..|.+++.++.+ .|-.++...|..++..+...|.- -...+++.+
T Consensus 1218 ~y~el~kw~-d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~~ 1292 (1304)
T KOG1114|consen 1218 NYQELLKWL-DASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKNW 1292 (1304)
T ss_pred HHHHHHHHh-hcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhhh
Confidence 666666421 134556676666777778888888888888755 45556666777777777666654 333344443
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.48 E-value=3.9e+02 Score=26.13 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcCcc--hHHHHHHHHH--hcCChhHHHHHHHHHHHc
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVHSL--PYNVMMTLYM--KIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 240 (535)
...+.+++..|.++|+++..+ ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344789999999999999987 666555 4455555554 456788999999887765
No 427
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.87 E-value=5.3e+02 Score=27.55 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=18.0
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+.+-.-+.|+.+|.+.-+.|.+..++
T Consensus 373 ~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 373 FEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhhhhhccCHHHHHHHHHHHhccCCc
Confidence 34445567788888888888877654
No 428
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.85 E-value=1.5e+02 Score=21.46 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=13.4
Q ss_pred HhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcC
Q 009424 159 VASAEDFFLSLPDTLKDRRVYGALLNAYVRAR 190 (535)
Q Consensus 159 ~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g 190 (535)
.+.|+++++.++. +...+|.++.+++-..|
T Consensus 46 ~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 46 RDQARQLLIDLET--RGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHh--cCHHHHHHHHHHHHhcC
Confidence 4444444444444 34444444444444443
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.81 E-value=84 Score=31.09 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=42.1
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIA-NLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
..+.++.|..++.++++.. ||-..| .-=..++.+.+++..|+.=+....+..+. ....|--=..++.+.+++.+|+
T Consensus 16 ~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred ccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHHH
Confidence 3444555555555554432 222222 11124455555555555555554443211 1111111122223333444444
Q ss_pred HHHHHhHHhccCCCCCCCHHHHHHHHHHHHh
Q 009424 443 SCLKGAFAAEGAKSWRPKPVNVINFFKACEE 473 (535)
Q Consensus 443 ~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~ 473 (535)
..|+... .+.|+..-+...+.-|-.
T Consensus 93 ~~l~~~~------~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 93 LDLEKVK------KLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHhh------hcCcCcHHHHHHHHHHHH
Confidence 4444444 455555555555554433
No 430
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.78 E-value=86 Score=24.46 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=34.0
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCh
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRY 122 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 122 (535)
.+++..+...+.+. .|-++++.|.+.|...+..|.-..|+.+.+.|-+
T Consensus 11 ~~Il~~l~~~~~~~-ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHL-TAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSE-EHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCC-CHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 35667777777777 8888888888888788888777777777766643
No 431
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.75 E-value=1.5e+02 Score=21.24 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=2.7
Q ss_pred HHHHcCCC
Q 009424 236 EMKEKGIR 243 (535)
Q Consensus 236 ~m~~~g~~ 243 (535)
.+.+.|..
T Consensus 77 ~Ll~~g~~ 84 (89)
T PF12796_consen 77 LLLEHGAD 84 (89)
T ss_dssp HHHHTTT-
T ss_pred HHHHcCCC
Confidence 33344433
No 432
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.66 E-value=3.6e+02 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=17.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
.+...+..+|..+.|..+++.+.+.++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 334445567777777777777777543
No 433
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.54 E-value=2.9e+02 Score=26.20 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=34.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc---CCCCCHhHHHH--HHHHHHccccHHHHHHHHHHhH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEE---GGKPNSTSWET--LAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.++...-+.++.++|.++++++.+. --.|+.+.|-. +...+...|+..++.+++.+..
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~ 142 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLK 142 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444445566777777777777652 23445555433 3344556677777777777776
No 434
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.52 E-value=5.8e+02 Score=27.85 Aligned_cols=300 Identities=12% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCcC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcCCCHhHHHHHHHH
Q 009424 197 LLIDKMRDKGYAVH-SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC----GSQGSTEKMEGVFEL 271 (535)
Q Consensus 197 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~----~~~g~~~~a~~~~~~ 271 (535)
+++..=.+++..++ ..-...--..+...|...+|+ +.....| |...-..++.-+ ...+++..-....+.
T Consensus 332 eFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI---~hAlaA~---d~~~aa~lle~~~~~L~~~~~lsll~~~~~~ 405 (894)
T COG2909 332 EFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAI---DHALAAG---DPEMAADLLEQLEWQLFNGSELSLLLAWLKA 405 (894)
T ss_pred HHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHH---HHHHhCC---CHHHHHHHHHhhhhhhhcccchHHHHHHHHh
Q ss_pred hHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHH--------HhcCCHHHHHHHHHHH
Q 009424 272 MKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY--------GSVGKKEEVYRVWNLY 343 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--------~~~g~~~~a~~~~~~m 343 (535)
+. ..-+..++...-.-+.......++++|..+..+....-..|+...-..+...+ ...|++++|.++-+..
T Consensus 406 lP-~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a 484 (894)
T COG2909 406 LP-AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA 484 (894)
T ss_pred CC-HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q ss_pred Hh----hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHHcC--ChhHHHHHHHH
Q 009424 344 RS----VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW-----YVKEG--NFDKAEAFFNS 412 (535)
Q Consensus 344 ~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g--~~~~A~~~~~~ 412 (535)
.. ....+..+.+..+..+..-.|++++|..+.+...+..-..+...+..+... +-..| ...+.+..|..
T Consensus 485 l~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 485 LVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHH---cCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHH--HHHHHHHhcCChhhHHHHHHHH
Q 009424 413 IIE---EGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVI--NFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 413 m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~--~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
... ..........-.-...+...-+.+.+..-...-.+........|-..-+. .+.......|+.+.|...++++
T Consensus 565 ~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 565 IREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q ss_pred hcCCCCC--hhhHHHHHH
Q 009424 488 RQPGYRK--EKDYMSLIG 503 (535)
Q Consensus 488 ~~~~~~~--~~~~~~L~~ 503 (535)
......+ ..-|.+.+.
T Consensus 645 ~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 645 ERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHhcCCCCCchHHHHHH
No 435
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.47 E-value=2.9e+02 Score=26.93 Aligned_cols=24 Identities=17% Similarity=-0.141 Sum_probs=12.8
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
.+.+.+++..|.++|+++....++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~ 162 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLS 162 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccC
Confidence 344555555666666555555433
No 436
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.41 E-value=1.6e+02 Score=22.44 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=8.1
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 009424 324 LSLYGSVGKKEEVYRVWNL 342 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~ 342 (535)
+..|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444444
No 437
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.75 E-value=3.6e+02 Score=25.18 Aligned_cols=113 Identities=9% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 009424 180 GALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ 259 (535)
Q Consensus 180 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 259 (535)
-.++..+.+.++..+..+.+..+.. +..-...+......|++..|+++..+..+.= . ...-|+.+=..-.+.
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~~~L 173 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLSSQL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHhHHH
Confidence 3444555555555555555555533 2333445556666677777766666655430 0 000111110000010
Q ss_pred CCH-----hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 260 GST-----EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 260 g~~-----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
.++ +.....|..+.. .-|+..|..++.+|.-.|+...+.+-
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~----~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQ----DFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 000 011122333332 34667778888888777776655533
No 438
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.70 E-value=1.4e+02 Score=20.45 Aligned_cols=47 Identities=6% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
...++.+++.+++..-+++++..+.+..+.|.. +..+|---++.+++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 334444445555444455555555555444432 34444444444433
No 439
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.55 E-value=2.3e+02 Score=22.91 Aligned_cols=90 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc---cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHH-HHHhcCC
Q 009424 401 GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER---RILEALSCLKGAFAAEGAKSWRPKPVNVINFFK-ACEEESD 476 (535)
Q Consensus 401 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~-a~~~~g~ 476 (535)
+++-...+-+..-...+ .+...+--.+..++.+.. +..+.+.++.+.. +..-+-...-+...+. +|.+.+.
T Consensus 12 ~d~~~~~e~~~rq~a~~-~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~----~~~~~~~rRe~lyYLAvg~yRlke 86 (149)
T KOG3364|consen 12 EDLIAGQEEILRQAARS-DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLL----KSAHPERRRECLYYLAVGHYRLKE 86 (149)
T ss_pred hhhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHh----hhcCcccchhhhhhhHHHHHHHhh
Q ss_pred hhhHHHHHHHHhcCCCCCh
Q 009424 477 MGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~ 495 (535)
++.++++.+.+++..+.+.
T Consensus 87 Y~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 87 YSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHHhhCCCcH
No 440
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.48 E-value=88 Score=22.72 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=15.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 009424 224 IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGS 261 (535)
Q Consensus 224 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 261 (535)
..+.+++.++++.+..+| ...|.+..+++-..|.
T Consensus 43 ~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 43 GSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred CCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 334455555555555543 2344444444444443
No 441
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.27 E-value=1.7e+02 Score=21.37 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
.++|+-....|+..|+.+|..+++.+.-.=.++...++++.|
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 442
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.88 E-value=75 Score=21.73 Aligned_cols=49 Identities=6% Similarity=0.101 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 174 KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
+....++.++..+++..-.++++..+++..+.|. -+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4556666777777776667777777777776663 234444444444443
No 443
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.62 E-value=3.8e+02 Score=25.17 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhCC----CCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009424 333 KEEVYRVWNLYRSVFP----GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 408 (535)
.++|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677777777766311 334444556666667777766666666655433 256677788888888888888888
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcccc--HHHHHHHHHH
Q 009424 409 FFNSIIEEGGKPNSTSWETLAEGHIRERR--ILEALSCLKG 447 (535)
Q Consensus 409 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~ 447 (535)
+++.....+..++... ..++.++...+. .+.+++++..
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 8888777442223333 334444442232 2555555544
No 444
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=35.60 E-value=3.2e+02 Score=26.90 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHH-----HHhhCCHhhHHHHHhhCCCC--C
Q 009424 101 GRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDL-----IAKVHGVASAEDFFLSLPDT--L 173 (535)
Q Consensus 101 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~f~~~~~~--~ 173 (535)
.+.||.++.+-+...++..-..+-...+++.-++.+.++-.--.....||++ -.+...-+++.++++.|+.. .
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~ 257 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSV 257 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhccc
Confidence 5788888877777777776777778888888887773332222222222221 13344567777777777764 3
Q ss_pred CCHHHHHHHHHHHH
Q 009424 174 KDRRVYGALLNAYV 187 (535)
Q Consensus 174 ~~~~~~~~li~~~~ 187 (535)
.|+.-+-+|...|+
T Consensus 258 eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 258 EDVPDFFSLAQYYS 271 (669)
T ss_pred ccchhHHHHHHHHh
Confidence 34445555555444
No 445
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.59 E-value=1.9e+02 Score=21.75 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
..-++.+++...++.....-....|.-.|.+.|+.+.|.+-|+.=+ .+-|.+.+|.-++
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK------alFPES~~fmDFL 112 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK------ALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh------hhCccchhHHHHH
Confidence 3444556666654433333334455566777777777777777655 4556666655443
No 446
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=35.10 E-value=6.2e+02 Score=27.51 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 460 KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 460 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
|...+..++.++.. |+.+.+..+++++...|.........|++.+
T Consensus 245 d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l 289 (830)
T PRK07003 245 DQTYMVRLLDALAA-GDGPEILAVADEMALRSLSFSTALQDLASLL 289 (830)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34445555555544 7777888888888777776665555555554
No 447
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.00 E-value=2.5e+02 Score=24.81 Aligned_cols=23 Identities=0% Similarity=-0.054 Sum_probs=13.1
Q ss_pred HHHhcCChhhHHHHHHHHhcCCC
Q 009424 470 ACEEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 470 a~~~~g~~~~a~~~~~~~~~~~~ 492 (535)
...+.|+.++|.+.|.+++..+-
T Consensus 174 L~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 174 LNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHhCCHHHHHHHHHHHHcCCC
Confidence 34555666666666666655433
No 448
>PRK14700 recombination factor protein RarA; Provisional
Probab=34.70 E-value=3e+02 Score=25.76 Aligned_cols=45 Identities=7% Similarity=-0.046 Sum_probs=27.9
Q ss_pred HHHHHHhcc---CCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcc
Q 009424 75 AIFRKLSLM---DNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFR 120 (535)
Q Consensus 75 ~li~~~~~~---g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 120 (535)
-+|+++.++ .+++ .|+-.+.+|++.|-.|....-..++-+.-.-|
T Consensus 128 d~iSAf~KSiRGSDpD-AAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 128 EQLSAFHKSVRGTDPD-AAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred HHHHHHHHHhhcCCcc-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 356666443 5666 77777777777777666666555555554444
No 449
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.52 E-value=3.4e+02 Score=29.53 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=109.7
Q ss_pred cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHH
Q 009424 189 ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGV 268 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~ 268 (535)
+.++++.+.+.+.-.--| -++|..+.+.|..+-|+.+.+.= .+ -...+..+|+++.|.+.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~---------~t---RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDE---------RT---RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCc---------ch---heeeehhcCCHHHHHHH
Confidence 456666666555432222 45677777888888887765422 21 12345678999998876
Q ss_pred HHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 009424 269 FELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP 348 (535)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 348 (535)
-..+. |..+|..|...-.+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.++.+..+..
T Consensus 666 akkld-------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r-- 727 (1202)
T KOG0292|consen 666 AKKLD-------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR-- 727 (1202)
T ss_pred HHhcC-------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh--
Confidence 65543 567999999999999999999999987753 334444566678888776665554332
Q ss_pred CCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 349 GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 349 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
-|. ......-.-.|++++-.+++... |..| ..|-. -..+|.-++|.++.++...
T Consensus 728 -~D~---~~~~qnalYl~dv~ervkIl~n~---g~~~--laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 728 -NDA---TGQFQNALYLGDVKERVKILENG---GQLP--LAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred -hhh---HHHHHHHHHhccHHHHHHHHHhc---Cccc--HHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 121 12222223467888777777653 3222 12211 1236777888888888765
No 450
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.20 E-value=2.1e+02 Score=21.90 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKE 239 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 239 (535)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888877766
No 451
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.08 E-value=86 Score=22.09 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=27.1
Q ss_pred ccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcc
Q 009424 82 LMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFR 120 (535)
Q Consensus 82 ~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 120 (535)
..|+.+ .+.+++++....|..|.......+..+..+.|
T Consensus 13 ~~~d~~-~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEE-EAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CC-HHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 357777 88888888888888887777666666655443
No 452
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.88 E-value=3.7e+02 Score=24.56 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=64.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHccC-----hHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCC
Q 009424 96 DWEKGGRSLTKWELCRVVKELRKFRR-----YKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLP 170 (535)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 170 (535)
-+.+.++.+|......+++.+..... .+-..+...|- +.|.....++.....+...|.+.|++.+|+.-|-.-.
T Consensus 39 v~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 39 VYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 33445666676666666665554432 22233344444 4443345677888888888899999998888776654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009424 171 DTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 171 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 240 (535)
+ ++...+..++.-....|...++ |...-.+ +--|.-.++...|...++...+.
T Consensus 118 ~--~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra-VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 118 D--PSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA-VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H--HHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH-HHHHHHhcCHHHHHHHHHHHHHH
Confidence 4 3444443344444444444333 1111112 22344566777777777666544
No 453
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.84 E-value=1.9e+02 Score=21.19 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=5.7
Q ss_pred CCHhhHHHHHHHH
Q 009424 366 GDIEGMEKIFEEW 378 (535)
Q Consensus 366 g~~~~a~~~~~~~ 378 (535)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 4444444444444
No 454
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.70 E-value=2.6e+02 Score=26.54 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=31.8
Q ss_pred HHHhhCCHhhHHHHHhhCCCC-----CCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHH-----CCCCcCc
Q 009424 152 LIAKVHGVASAEDFFLSLPDT-----LKDRRVY--GALLNAYVRARMRGNAELLIDKMRD-----KGYAVHS 211 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~ 211 (535)
..-+.++-++|.+.++++.+. .|+.+.| +.+...+...|+..++.+++++..+ .|++|++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 334445555565555555332 3444444 3344455556666666666666655 4555544
No 455
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=32.18 E-value=96 Score=20.61 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=7.4
Q ss_pred CCCChhHHHHHH
Q 009424 518 EDSDEDSEMLLS 529 (535)
Q Consensus 518 i~~~~~~~~l~~ 529 (535)
.+|++.+++||+
T Consensus 33 MDpnea~qrLL~ 44 (60)
T PF06972_consen 33 MDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHh
Confidence 566666666655
No 456
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=32.13 E-value=1.5e+02 Score=22.72 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=16.9
Q ss_pred hHHHHHHHHhHhCCCCCC-CHHHHHHHHHH
Q 009424 263 EKMEGVFELMKVDKAVNP-NWTTFSTMATM 291 (535)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~-~~~~~~~li~~ 291 (535)
++|...+.++....|+.| |+.+--++...
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~S 34 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLS 34 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHH
Confidence 356667777776667777 55444444333
No 457
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=32.00 E-value=7e+02 Score=27.13 Aligned_cols=20 Identities=10% Similarity=-0.154 Sum_probs=15.0
Q ss_pred HHHHccccHHHHHHHHHHhH
Q 009424 430 EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~ 449 (535)
+-+-..|++++|+.++..+-
T Consensus 630 ~~a~~~G~~~~sI~LY~lag 649 (835)
T KOG2168|consen 630 SEADEDGLFEDAILLYHLAG 649 (835)
T ss_pred HHHHhcCCHHHHHHHHHHhh
Confidence 44556788888888888776
No 458
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=31.19 E-value=1.4e+02 Score=21.62 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 460 KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 460 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
.+.....++..|.. ++++++...+..+...|+.+......|.+..
T Consensus 4 ~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l 48 (89)
T PF08542_consen 4 PPEVIEEILESCLN-GDFKEARKKLYELLVEGYSASDILKQLHEVL 48 (89)
T ss_dssp -HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34444455555544 3666666666666655665555555555555
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.80 E-value=1.2e+02 Score=25.57 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=31.9
Q ss_pred HhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 98 EKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 98 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
...|++++..-. .++..+....+.-.|.++++.+.+.+ ...+..+.-..++.+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~--~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAE--PQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhC--CCCCcchHHHHHHHHHHCCCE
Confidence 344555555443 44555554455556666666666666 444444444455556555544
No 460
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.77 E-value=2.3e+02 Score=21.60 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHhhHHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~ 377 (535)
++..|...++.++|...+.+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHH
Confidence 33444444444444444443
No 461
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=30.73 E-value=6.2e+02 Score=26.15 Aligned_cols=370 Identities=11% Similarity=0.001 Sum_probs=197.3
Q ss_pred hccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 81 SLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELR-KFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 81 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
.+-|..+ .+.++|++-+.. +......|...+..+. ..|+.+.....|+.....-..--.+...+-..|..--.++++
T Consensus 90 ~klg~~~-~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 90 YKLGNAE-NSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHhhhHH-HHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 3457777 889999987663 5555555555555444 457788888888888764311223344555666666778888
Q ss_pred hhHHHHHhhCCCCCCCHHHHHHHHHHHHH---c------CCHhHHHHHHHHHHHC----CCCcCcchHHHHHHHHHhc-C
Q 009424 160 ASAEDFFLSLPDTLKDRRVYGALLNAYVR---A------RMRGNAELLIDKMRDK----GYAVHSLPYNVMMTLYMKI-K 225 (535)
Q Consensus 160 ~~A~~~f~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~-g 225 (535)
.....+++++.+. ...-++..-.-|.+ . ...+++.++-.....+ -..+....+..-++.-... +
T Consensus 168 k~v~~iyeRilei--P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~ 245 (577)
T KOG1258|consen 168 KRVANIYERILEI--PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSK 245 (577)
T ss_pred HHHHHHHHHHHhh--hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccc
Confidence 8888899888773 33334433333322 2 2233333332222211 0001111122211111111 1
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCC------CCCCHHHHHHHHHHHHhcCCHH
Q 009424 226 EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKA------VNPNWTTFSTMATMYIKMGQVE 299 (535)
Q Consensus 226 ~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~ 299 (535)
..+++..+..+.. ..--.++-........+..|+.-.++.- .+++..+|..-++.-.+.|+.+
T Consensus 246 ~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~ 314 (577)
T KOG1258|consen 246 SLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFS 314 (577)
T ss_pred hhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHH
Confidence 1122221111111 0111122223334444445555443211 1335667888888888899999
Q ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 300 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
.+.-+|++..-- +..=...|--.+.-....|+.+-|..++....+........+-..-..-+-..|+++.|..+++.+.
T Consensus 315 ~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 315 RVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999888886421 1111234555555555668888888877776664333332221111122345678999999999887
Q ss_pred hcCCCCCH-HHHHHHHHHHHHcCChhHHHH---HHHHHHHcCCCCCHhHHHHHHHHH-----HccccHHHHHHHHHHhHH
Q 009424 380 SVKSSYDP-RIANLMMSWYVKEGNFDKAEA---FFNSIIEEGGKPNSTSWETLAEGH-----IRERRILEALSCLKGAFA 450 (535)
Q Consensus 380 ~~~~~~~~-~~~~~li~~~~~~g~~~~A~~---~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~ 450 (535)
..- |+. .+-..-+.+..+.|..+.+.. ++..... |- -+......+.--+ .-.++.+.|..++.+|.+
T Consensus 394 ~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~-~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 394 SEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GK-ENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred hhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cc-cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 654 333 333344566677788887773 3332222 11 1333333333222 235678889999998882
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcC
Q 009424 451 AEGAKSWRPKPVNVINFFKACEEES 475 (535)
Q Consensus 451 ~~~~~g~~p~~~~~~~ll~a~~~~g 475 (535)
-+.++...|..++..+...+
T Consensus 470 -----~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 470 -----ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -----cCCccHHHHHHHHHHHHhCC
Confidence 34556667778887766554
No 462
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.67 E-value=4.7e+02 Score=24.74 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=7.8
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
+.|+..+|.+.|+++.
T Consensus 287 klGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLM 302 (556)
T ss_pred HhhhHHHHHHHHHHHh
Confidence 3455555555554444
No 463
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=30.55 E-value=25 Score=20.00 Aligned_cols=22 Identities=5% Similarity=-0.082 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHHHCCCCcCcchHH
Q 009424 192 RGNAELLIDKMRDKGYAVHSLPYN 215 (535)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~~~~ 215 (535)
++.|..+|++.... .|++.+|.
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45555566555543 35555554
No 464
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.38 E-value=2.2e+02 Score=20.93 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=7.0
Q ss_pred hcCCCHhHHHHHHHHh
Q 009424 257 GSQGSTEKMEGVFELM 272 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~ 272 (535)
...|+.++|.+.+++.
T Consensus 52 ~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 52 RRFGHYEEALQALEEA 67 (94)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3344444444444443
No 465
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=30.28 E-value=4.6e+02 Score=24.56 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHH-HHhhCCCCch----hhHHHHHHHHHhcCCHh-hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 330 VGKKEEVYRVWNL-YRSVFPGVTN----LGYHAMISSLARIGDIE-GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 330 ~g~~~~a~~~~~~-m~~~~~~~~~----~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
...+++.+...++ |++. .-|+. +.|.+++++---+.+-+ -|.+.++ ....|.-|+.+++..|+.
T Consensus 268 e~p~~evi~~VKee~k~~-nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRN-NLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFCSQGQS 337 (412)
T ss_pred CCCHHHHHHHHHHHHHhc-CCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHhcCChH
Confidence 3445555555544 4443 33443 45667666643332211 1222333 345688899999999988
Q ss_pred hHHH
Q 009424 404 DKAE 407 (535)
Q Consensus 404 ~~A~ 407 (535)
+-.+
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 7654
No 466
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.06 E-value=4.5e+02 Score=24.36 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=39.9
Q ss_pred HHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHHHH
Q 009424 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTF-------STMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 252 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~~ 307 (535)
+.+-..+.+++++|...+.++.. .|...|..+. ..+...|...|+...-.+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~-kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILG-KGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhc-CCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 45567788999999999999995 5777765554 4566778888887665555443
No 467
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.75 E-value=1.7e+02 Score=19.75 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=5.9
Q ss_pred cCChhHHHHHHHHH
Q 009424 400 EGNFDKAEAFFNSI 413 (535)
Q Consensus 400 ~g~~~~A~~~~~~m 413 (535)
.|++-+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44444444444444
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.55 E-value=2.3e+02 Score=25.60 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=40.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHh
Q 009424 216 VMMTLYMKIKEYDEVESMVSEMKE----KG-IRLDVYSYNIWLSSCGSQGSTEKMEGVFELM 272 (535)
Q Consensus 216 ~li~~~~~~g~~~~a~~~~~~m~~----~g-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~ 272 (535)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456677888888888888887742 33 3345566777788888888888777665544
No 469
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.34 E-value=4.5e+02 Score=24.06 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHH
Q 009424 280 PNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359 (535)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 359 (535)
-|......+...|.+.|++.+|+..|-.- -.++...+..++......|...++ + .-....+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~--------------d-lfi~RaV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEA--------------D-LFIARAV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------H-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcch--------------h-HHHHHHH
Confidence 45667778888888888888888776422 112222221233222222222221 1 2223344
Q ss_pred HHHHhcCCHhhHHHHHHHHHhc
Q 009424 360 SSLARIGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~ 381 (535)
--|...+++..|...+....+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4556677888888777666544
No 470
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.20 E-value=2.9e+02 Score=25.84 Aligned_cols=71 Identities=7% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc----------ccHHHH
Q 009424 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE----------RRILEA 441 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------g~~~~A 441 (535)
.++|+.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..++..|+.. |++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHH
Q 009424 442 LSCLKG 447 (535)
Q Consensus 442 ~~~~~~ 447 (535)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
No 471
>PRK13342 recombination factor protein RarA; Reviewed
Probab=28.95 E-value=5.8e+02 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=10.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
++.+.|+.++..|.+.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4445555555555555544443
No 472
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.83 E-value=6.1e+02 Score=25.48 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=5.6
Q ss_pred HHHHHHhCCCCCC
Q 009424 93 VLNDWEKGGRSLT 105 (535)
Q Consensus 93 ~~~~m~~~g~~p~ 105 (535)
+++.+.+.|..|+
T Consensus 50 ivk~Ll~~g~~~~ 62 (480)
T PHA03100 50 VVKILLDNGADIN 62 (480)
T ss_pred HHHHHHHcCCCCC
Confidence 3344444454443
No 473
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=28.81 E-value=2.1e+02 Score=25.84 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009424 90 SASVLNDWEKGGRSLTKWELCRVVKELRK 118 (535)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (535)
++++|.++.+. +..|.......+..+..
T Consensus 33 v~k~f~~a~~~-i~vd~~~i~~a~~wL~~ 60 (246)
T PF07678_consen 33 VVKVFSQAKKY-IFVDENVICRAVKWLIS 60 (246)
T ss_dssp HHHHHHHHTTT-S-CEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hcCCHHHHHHHHHHHHH
Confidence 44566666665 66666665555555543
No 474
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=28.62 E-value=6.9e+02 Score=27.52 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=17.7
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 381 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
.|+..+......++... .|++..++..++++.
T Consensus 195 EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLi 226 (824)
T PRK07764 195 EGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLL 226 (824)
T ss_pred cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 45555555544444332 366667777666655
No 475
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.14 E-value=6.7e+02 Score=25.72 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhH
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKEKDY 498 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 498 (535)
...++.+... |+.+.|..+++.+...|..|....
T Consensus 261 if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~~l 294 (507)
T PRK06645 261 IIEFVEYIIH-RETEKAINLINKLYGSSVNLEIFI 294 (507)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3334444433 566666666666666666555433
No 476
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.68 E-value=6e+02 Score=24.98 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC--CCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc---------CCCCC
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKG--YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK---------GIRLD 245 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~pd 245 (535)
..+.-+-+.|..+|+++.|++.|.+.+.-- -+-.+..|-.+|..-.-.|+|........+..+. -+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 457778889999999999999999865421 1112445666666667778887777766665543 12333
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 246 VYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 246 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
...+..|...+.+ ++..|.+.|-...
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCC
Confidence 4444444443333 6666666665544
No 477
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.60 E-value=4.6e+02 Score=23.67 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHHHHHccccHHHHHHHHHHhHHhccCCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHH
Q 009424 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWR-PKPVNVINFFKACEEESDMGSKEAFVA 485 (535)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~ 485 (535)
|..-|.+.|++++|.++|+.+...-.+.|.. +...+...+..++.+.|+.+....+.=
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455556666666666666654222233322 233344444555556666655554443
No 478
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=27.26 E-value=30 Score=22.67 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=24.8
Q ss_pred CCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH
Q 009424 190 RMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM 222 (535)
Q Consensus 190 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 222 (535)
|-.++.+.+|+.|..+...|....||-.++-|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 445677888888888888888888877776554
No 479
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.23 E-value=2.4e+02 Score=21.82 Aligned_cols=25 Identities=12% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKG 241 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g 241 (535)
+|+.+.++...++|+++.+.|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455555666666666666666665
No 480
>PRK12356 glutaminase; Reviewed
Probab=27.14 E-value=5.4e+02 Score=24.35 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNS 412 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~ 412 (535)
..+...+......||.+|.+-++.-+
T Consensus 231 ~~~~r~v~s~M~TCGmYd~SG~fa~~ 256 (319)
T PRK12356 231 ADNVPYILAEMTMEGLYERSGDWAYT 256 (319)
T ss_pred HHHHHHHHHHHHHcCCccchhhHHHH
Confidence 34445555556667777777666544
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.11 E-value=4.5e+02 Score=23.39 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=0.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHhHHHH--HHHHHHccccHHHHHHHHHHhHHhccCCCC
Q 009424 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-KPNSTSWET--LAEGHIRERRILEALSCLKGAFAAEGAKSW 457 (535)
Q Consensus 381 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~~g~ 457 (535)
..+.++..-+|.||--|.-...+.+|-+.|..-..-.. .+|..+++. -|......|+.++|++...+.. -.-+
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~----PeiL 95 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN----PEIL 95 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC----hHHH
Q ss_pred CCCHHHHHHHHH----HHHhcCChhhHHHHHHH
Q 009424 458 RPKPVNVINFFK----ACEEESDMGSKEAFVAL 486 (535)
Q Consensus 458 ~p~~~~~~~ll~----a~~~~g~~~~a~~~~~~ 486 (535)
.-|...+..+.. -..+.|..++|.++.+.
T Consensus 96 d~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 96 DTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 482
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=26.73 E-value=2.2e+02 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=13.9
Q ss_pred HHHHHHHHhHhCCCCCC-CHHHHHHHH
Q 009424 264 KMEGVFELMKVDKAVNP-NWTTFSTMA 289 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~-~~~~~~~li 289 (535)
++.+.+..+....|+.| |+.+--++-
T Consensus 7 ~~~~~L~~Lk~~tgi~~~Nil~R~A~~ 33 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITPWNILCRIAFC 33 (113)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 45556666665566666 444433333
No 483
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.19 E-value=6.5e+02 Score=24.91 Aligned_cols=32 Identities=9% Similarity=-0.091 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHhcccCCCcchHHHHHHH
Q 009424 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSL 326 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 326 (535)
.++.+.|+..+..|.+.|..|..+.-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 36677777777777766655554443333333
No 484
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.75 E-value=1e+03 Score=27.12 Aligned_cols=154 Identities=10% Similarity=0.048 Sum_probs=96.3
Q ss_pred HhccCCCCccHHHHHHHHHh-----------------------CCCCCC-----HHHHHHHHHHHHHccChHHHHHHHHH
Q 009424 80 LSLMDNPQLGSASVLNDWEK-----------------------GGRSLT-----KWELCRVVKELRKFRRYKHALEVYDW 131 (535)
Q Consensus 80 ~~~~g~~~~~a~~~~~~m~~-----------------------~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~ 131 (535)
|...|.+. +|+..|.+... .|-.|. ..-|..+++.+-+.+..+.+.++-..
T Consensus 930 yl~tge~~-kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 930 YLGTGEPV-KALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eecCCchH-HHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 56667777 88887776532 232232 23367778888888888888888776
Q ss_pred HHhcC-CCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHH------------HH-
Q 009424 132 MNNRG-ERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNA------------EL- 197 (535)
Q Consensus 132 ~~~~g-~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A------------~~- 197 (535)
+++.- +..+.-...++.+.+.....|.+.+|.+..-+.+....-.....-++..++++|.++.- ..
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~ 1088 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDF 1088 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHH
Confidence 66543 22333445667777777888888888888777765434445667778888888876543 22
Q ss_pred HHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHH
Q 009424 198 LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234 (535)
Q Consensus 198 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 234 (535)
+++.--+........-|+.|-..+...+++.+|-.+.
T Consensus 1089 l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1089 LRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 2222111111122345677777777888888776554
No 485
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=25.73 E-value=2.4e+02 Score=21.94 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHH-cCCCC-CHHHHHHHHHHH
Q 009424 228 DEVESMVSEMKE-KGIRL-DVYSYNIWLSSC 256 (535)
Q Consensus 228 ~~a~~~~~~m~~-~g~~p-d~~~~~~ll~~~ 256 (535)
+++.+.+.++.+ .|+.| |+..--++....
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL 36 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSL 36 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 345555555544 36666 554444443333
No 486
>PHA00425 DNA packaging protein, small subunit
Probab=25.58 E-value=1.6e+02 Score=20.81 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccccCCCCCCh
Q 009424 477 MGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDEDSDE 522 (535)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~~~~i~~~~ 522 (535)
.+.|++.+..+....-..+..||++-..+ .|+.-....+.||+
T Consensus 15 TE~a~~mL~DL~ddekRtPQLYnAIgKlL---~RHkF~isKl~pD~ 57 (88)
T PHA00425 15 TEMAQRMLADLKDDEKRTPQLYNAIGKLL---DRHKFQISKLQPDE 57 (88)
T ss_pred HHHHHHHHHHhcCccccChHHHHHHHHHH---HHhcccccccCCcH
Confidence 44555555555544444444555555554 33333444444444
No 487
>PRK10941 hypothetical protein; Provisional
Probab=25.21 E-value=5.4e+02 Score=23.69 Aligned_cols=56 Identities=7% Similarity=-0.059 Sum_probs=23.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 217 MMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 217 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
+-.+|.+.++++.|+.+.+.+.... +.|..-+.----.|.+.|.+..|..=++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3344444444444444444444432 1122223323333444444444444444443
No 488
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.19 E-value=1.3e+02 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009424 287 TMATMYIKMGQVEKAEESLRRVESRIT 313 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~ 313 (535)
++++.+.+|.-.++|+++++.|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 357778899999999999999988763
No 489
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.11 E-value=4.9e+02 Score=23.17 Aligned_cols=125 Identities=13% Similarity=0.155 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhc--CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 354 GYHAMISSLARI--GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 354 ~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
.|...+.++... ++++.|.+.+.. -.. .+..-.-++.++...|+.+.|.++++...-. -.+...-..++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~--~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSL--IPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCC--CcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 466788887655 556666666632 111 1222345788888899999999998875421 1122333333444
Q ss_pred HHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 432 HIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
..++...||+.+-+... +. -....+..++..|..... + ...++.+.+.-+.+..
T Consensus 151 -La~~~v~EAf~~~R~~~----~~---~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYP----DE---LRRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEEE 204 (226)
T ss_pred -HHcCCHHHHHHHHHhCc----hh---hhHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChHH
Confidence 66789999998888776 21 114577777877765443 1 2336666666555544
No 490
>PRK14700 recombination factor protein RarA; Provisional
Probab=25.00 E-value=5.8e+02 Score=23.92 Aligned_cols=31 Identities=10% Similarity=-0.165 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHhcccCCCcchHHHHHHH
Q 009424 296 GQVEKAEESLRRVESRITGRDRVPYHYLLSL 326 (535)
Q Consensus 296 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 326 (535)
.|.+.|+-.+-+|.+.|-.|.-+.-..++.+
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~A 170 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIA 170 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444444444444444433333333333
No 491
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=24.80 E-value=60 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=9.5
Q ss_pred CHhHHHHHHHHhHhCCCCCCC
Q 009424 261 STEKMEGVFELMKVDKAVNPN 281 (535)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~ 281 (535)
+++.|...|..+...+.++++
T Consensus 40 d~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChh
Confidence 444455555554443334433
No 492
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.72 E-value=3.5e+02 Score=21.37 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc-hHHHHHHHHHhcCCHHHHHHHH
Q 009424 262 TEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVW 340 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~ 340 (535)
.+.-.+.............|......-+..--... ++.++|..|..+|+..... .|......+...|++++|.++|
T Consensus 46 ~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 46 LELLERCIRKFKDDERYKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HH
Q 009424 341 NL 342 (535)
Q Consensus 341 ~~ 342 (535)
+.
T Consensus 123 ~~ 124 (126)
T PF08311_consen 123 QL 124 (126)
T ss_dssp HH
T ss_pred Hh
No 493
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=24.68 E-value=3.3e+02 Score=20.98 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009424 226 EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL 305 (535)
Q Consensus 226 ~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (535)
..++|..+.+.+...+- -...+--+-+..+.+.|+++.| +..-.. .-.||...|-+|- -.+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~---~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQC---HCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTT---S--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhccc---CCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 34555555555555442 1122222223344555555555 111111 1245555554443 23455555555555
Q ss_pred HHHH
Q 009424 306 RRVE 309 (535)
Q Consensus 306 ~~m~ 309 (535)
.++.
T Consensus 93 ~rla 96 (116)
T PF09477_consen 93 TRLA 96 (116)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 5443
No 494
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.36 E-value=5e+02 Score=22.93 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCC-------hhHHHHHHHHHHHcCCCC----CHhH-HHHHHHHHHccccHHHHHHHHHHhH
Q 009424 391 NLMMSWYVKEGN-------FDKAEAFFNSIIEEGGKP----NSTS-WETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 391 ~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p----~~~~-~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-.+...|...|+ +..|.+.|++..+..-.| +..+ .-.+.....+.|+.++|.+.|.++.
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334445555554 334666666655432221 2222 2234455667888888888888888
No 495
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=24.20 E-value=6.8e+02 Score=24.45 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=27.7
Q ss_pred cCCHhHHHHHHHHHHH-----CCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 009424 189 ARMRGNAELLIDKMRD-----KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 238 (535)
.++.+.|.+-+-...+ .+...+...+..+++.|...++|+.--+....+.
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Ls 79 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLS 79 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 5666666655444332 1233344455666777777777776555544443
No 496
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.13 E-value=5.3e+02 Score=23.17 Aligned_cols=51 Identities=14% Similarity=0.005 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHhccCCCCCCCHHHHHHHHH-----HHHhcCChhhHHHHHHHHhc
Q 009424 438 ILEALSCLKGAFAAEGAKSWRPKPVNVINFFK-----ACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 438 ~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~-----a~~~~g~~~~a~~~~~~~~~ 489 (535)
.+.|.+.|+++.+... ..+.|...++..++- -|-..|+.++|.++.+...+
T Consensus 142 ~~~a~~aY~~A~~~a~-~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAK-KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHH-HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHh-cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566777777664331 226677666555543 23456888888877766543
No 497
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=24.08 E-value=4.8e+02 Score=22.70 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR-IANLMMSWYVKEGNFDKAEAFFNS 412 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 412 (535)
..+.++..|...|+++.|.+.|.-+++.. ..|.. .|..=+..+.+.+.-....+.++.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~ 101 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEW 101 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHH
Confidence 46778888888899999999999888654 33433 344444444444443333333333
No 498
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.06 E-value=3.5e+02 Score=25.83 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH
Q 009424 404 DKAEAFFNSIIEEGGKPN----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC 471 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~ 471 (535)
++...+++.+... .|+ +..|.+++......|.+++++.+|.+++ ..|..|=...-..++...
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi----~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAI----LAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH----HcCCChHHHHHHHHHHHH
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.97 E-value=2.5e+02 Score=22.96 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=14.5
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcc
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFR 120 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 120 (535)
.|-++++.+.+.+...+..|.-..|+.+...|
T Consensus 35 sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44455555444444444444444444444433
No 500
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=23.87 E-value=8.7e+02 Score=25.59 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=13.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHh
Q 009424 466 NFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
.+...+...|+.++|.+...+..
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 33444666666666666655543
Done!