Query 009424
Match_columns 535
No_of_seqs 761 out of 2980
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 04:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.7E-42 5.7E-47 359.9 40.6 474 22-513 30-568 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.4E-39 2.2E-43 332.9 33.0 441 50-506 87-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.5E-32 1.5E-36 270.6 22.2 185 285-473 29-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 8.7E-32 3E-36 268.5 23.9 188 177-365 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-27 7.3E-32 232.5 45.8 379 113-508 6-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-26 1.5E-30 223.0 43.4 379 77-475 6-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.8E-22 6.3E-27 201.4 37.6 310 109-429 29-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 5.9E-22 2E-26 197.7 38.5 312 176-502 26-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 3.2E-22 1.1E-26 203.1 37.0 414 70-501 6-489 (514)
10 2gw1_A Mitochondrial precursor 99.9 7.6E-22 2.6E-26 200.3 37.9 397 107-513 7-467 (514)
11 3fp2_A TPR repeat-containing p 99.9 3.6E-20 1.2E-24 189.2 41.3 408 69-497 24-498 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.2E-20 1.1E-24 189.5 33.7 393 106-513 25-480 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.3E-18 4.5E-23 167.5 39.5 318 176-508 3-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3E-18 1E-22 165.0 38.6 298 108-415 5-334 (359)
15 1fch_A Peroxisomal targeting s 99.8 1.6E-18 5.3E-23 167.9 27.7 293 188-486 37-355 (368)
16 3hym_B Cell division cycle pro 99.8 1.1E-17 3.9E-22 159.0 33.2 284 175-505 21-314 (330)
17 3hym_B Cell division cycle pro 99.8 1.7E-17 5.9E-22 157.8 34.2 278 139-449 18-297 (330)
18 2ooe_A Cleavage stimulation fa 99.8 2.7E-16 9.2E-21 160.1 41.1 419 69-505 12-509 (530)
19 1b89_A Protein (clathrin heavy 99.8 1.9E-19 6.6E-24 171.3 16.2 283 154-483 14-304 (449)
20 1fch_A Peroxisomal targeting s 99.8 6.5E-18 2.2E-22 163.5 26.4 291 153-449 35-357 (368)
21 2xm6_A Protein corresponding t 99.8 1.7E-15 5.8E-20 152.5 44.1 379 89-505 25-450 (490)
22 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.4E-22 161.4 26.2 272 210-486 64-352 (365)
23 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-19 3.6E-24 186.4 10.7 150 176-331 127-286 (1134)
24 3spa_A Mtrpol, DNA-directed RN 99.8 2.6E-20 8.9E-25 190.8 5.5 152 139-296 123-286 (1134)
25 2xm6_A Protein corresponding t 99.8 4.3E-15 1.5E-19 149.6 43.2 349 69-449 38-430 (490)
26 2ooe_A Cleavage stimulation fa 99.8 2.3E-15 7.8E-20 153.2 41.1 392 105-510 12-478 (530)
27 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.5E-22 161.3 22.8 283 160-449 48-354 (365)
28 1b89_A Protein (clathrin heavy 99.8 4.2E-17 1.4E-21 155.3 22.7 267 68-374 30-304 (449)
29 3cv0_A Peroxisome targeting si 99.8 3.3E-16 1.1E-20 148.6 28.4 270 211-487 21-312 (327)
30 3cv0_A Peroxisome targeting si 99.8 2.6E-16 9E-21 149.3 25.3 265 178-449 23-313 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 9.5E-16 3.2E-20 142.7 26.1 249 152-415 8-263 (291)
32 1xi4_A Clathrin heavy chain; a 99.7 5.5E-14 1.9E-18 149.0 41.8 344 104-507 983-1326(1630)
33 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.7E-20 141.0 26.9 275 113-407 6-285 (291)
34 1xi4_A Clathrin heavy chain; a 99.7 1.1E-13 3.9E-18 146.7 41.6 374 74-514 989-1374(1630)
35 4g1t_A Interferon-induced prot 99.7 4.8E-14 1.6E-18 141.3 32.2 389 70-496 51-465 (472)
36 4g1t_A Interferon-induced prot 99.7 5E-14 1.7E-18 141.1 31.3 376 106-519 51-454 (472)
37 3uq3_A Heat shock protein STI1 99.7 3.4E-14 1.1E-18 129.7 25.8 223 214-450 8-235 (258)
38 3uq3_A Heat shock protein STI1 99.7 2.2E-14 7.6E-19 130.9 24.1 226 246-491 5-237 (258)
39 2pl2_A Hypothetical conserved 99.6 1.9E-13 6.5E-18 121.3 22.9 198 245-449 4-212 (217)
40 3u4t_A TPR repeat-containing p 99.6 2.7E-13 9.1E-18 124.9 24.3 247 251-505 8-265 (272)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-13 4E-18 127.5 20.3 246 189-445 18-269 (275)
42 2pl2_A Hypothetical conserved 99.6 3.2E-13 1.1E-17 119.8 21.7 198 210-414 4-212 (217)
43 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-12 5.1E-17 118.4 25.9 59 390-449 144-202 (252)
44 2vq2_A PILW, putative fimbrial 99.6 2.2E-12 7.6E-17 114.8 26.0 26 424-449 149-174 (225)
45 3u4t_A TPR repeat-containing p 99.6 2E-12 7E-17 118.9 26.3 244 179-428 6-261 (272)
46 2ho1_A Type 4 fimbrial biogene 99.6 2.7E-12 9.1E-17 116.7 26.6 210 246-466 37-247 (252)
47 2vq2_A PILW, putative fimbrial 99.6 3.8E-12 1.3E-16 113.2 26.8 202 175-379 7-209 (225)
48 2h6f_A Protein farnesyltransfe 99.6 2.2E-12 7.5E-17 124.1 26.7 244 251-506 102-364 (382)
49 1ouv_A Conserved hypothetical 99.6 1.4E-11 4.7E-16 113.5 31.3 224 175-417 5-252 (273)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.9E-13 9.9E-18 124.8 19.3 220 223-449 17-242 (275)
51 2q7f_A YRRB protein; TPR, prot 99.5 5E-13 1.7E-17 120.7 19.9 209 284-501 25-233 (243)
52 1ouv_A Conserved hypothetical 99.5 1.7E-11 5.7E-16 113.0 30.3 222 249-493 9-254 (273)
53 3sf4_A G-protein-signaling mod 99.5 5.6E-13 1.9E-17 130.4 20.9 275 174-449 7-334 (406)
54 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.9E-17 117.7 21.8 197 214-416 26-222 (243)
55 4e6h_A MRNA 3'-END-processing 99.5 2.6E-10 8.9E-15 117.1 40.3 426 68-505 64-584 (679)
56 2h6f_A Protein farnesyltransfe 99.5 7.2E-12 2.5E-16 120.5 26.5 250 176-469 97-361 (382)
57 3e4b_A ALGK; tetratricopeptide 99.5 6E-12 2E-16 124.8 25.4 346 112-495 9-392 (452)
58 2ond_A Cleavage stimulation fa 99.5 3.9E-11 1.3E-15 112.6 29.7 188 299-493 81-273 (308)
59 3sf4_A G-protein-signaling mod 99.5 2.2E-12 7.4E-17 126.2 21.3 304 209-513 7-365 (406)
60 3ro2_A PINS homolog, G-protein 99.5 2.4E-12 8.1E-17 122.1 18.6 269 179-449 8-330 (338)
61 4a1s_A PINS, partner of inscut 99.5 1.9E-12 6.7E-17 126.9 17.9 282 177-491 49-373 (411)
62 4a1s_A PINS, partner of inscut 99.5 3.5E-12 1.2E-16 125.1 19.7 277 143-449 48-370 (411)
63 3e4b_A ALGK; tetratricopeptide 99.4 3.5E-12 1.2E-16 126.5 19.5 378 76-489 9-420 (452)
64 2ond_A Cleavage stimulation fa 99.4 6.6E-11 2.2E-15 111.1 27.0 217 228-450 33-269 (308)
65 3ro2_A PINS homolog, G-protein 99.4 5.9E-12 2E-16 119.4 19.8 279 212-491 6-333 (338)
66 3vtx_A MAMA; tetratricopeptide 99.4 4.1E-11 1.4E-15 103.1 22.0 165 281-449 4-168 (184)
67 3nf1_A KLC 1, kinesin light ch 99.4 1.5E-12 5E-17 122.3 12.6 246 175-449 26-305 (311)
68 4abn_A Tetratricopeptide repea 99.4 2.8E-11 9.7E-16 120.7 22.3 215 227-448 84-318 (474)
69 3ulq_A Response regulator aspa 99.4 4.8E-11 1.6E-15 115.9 23.4 232 252-490 109-368 (383)
70 4e6h_A MRNA 3'-END-processing 99.4 1.7E-09 6E-14 111.0 35.4 410 50-472 69-585 (679)
71 3nf1_A KLC 1, kinesin light ch 99.4 3E-12 1E-16 120.2 13.6 248 139-415 23-306 (311)
72 3ulq_A Response regulator aspa 99.4 4.1E-11 1.4E-15 116.4 21.0 164 284-450 186-367 (383)
73 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-10 4E-15 100.2 20.8 169 316-493 4-173 (184)
74 4abn_A Tetratricopeptide repea 99.4 4.6E-11 1.6E-15 119.2 20.8 186 318-513 103-310 (474)
75 1hz4_A MALT regulatory protein 99.4 5.3E-10 1.8E-14 108.0 27.7 302 179-493 17-352 (373)
76 1hz4_A MALT regulatory protein 99.3 2.1E-09 7.1E-14 103.8 29.5 296 146-449 17-347 (373)
77 3q15_A PSP28, response regulat 99.3 9.1E-10 3.1E-14 106.6 26.8 228 254-489 109-364 (378)
78 3as5_A MAMA; tetratricopeptide 99.3 1E-09 3.5E-14 93.9 22.4 163 144-310 9-172 (186)
79 3q15_A PSP28, response regulat 99.3 1.9E-10 6.7E-15 111.3 18.7 228 218-449 108-363 (378)
80 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.8E-14 97.6 21.4 209 280-504 5-223 (228)
81 3as5_A MAMA; tetratricopeptide 99.2 1.8E-09 6.1E-14 92.4 20.3 161 285-449 11-171 (186)
82 4i17_A Hypothetical protein; T 99.2 4.5E-09 1.5E-13 93.6 21.9 206 244-468 5-220 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.2 9.9E-10 3.4E-14 114.2 19.9 164 281-449 8-172 (723)
84 4gyw_A UDP-N-acetylglucosamine 99.2 1.4E-09 4.7E-14 113.1 20.3 165 245-415 8-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.8E-14 100.8 15.9 157 189-345 14-197 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 1.2E-09 4E-14 100.7 14.7 228 257-490 12-281 (283)
87 1qqe_A Vesicular transport pro 99.1 7E-09 2.4E-13 96.3 18.8 209 261-491 32-270 (292)
88 3mv2_B Coatomer subunit epsilo 99.0 2.4E-07 8.1E-12 84.6 26.1 189 301-496 85-288 (310)
89 2fo7_A Synthetic consensus TPR 99.0 2.4E-08 8.2E-13 80.1 17.5 129 178-310 3-131 (136)
90 1qqe_A Vesicular transport pro 99.0 1.6E-08 5.5E-13 93.8 18.7 193 255-449 46-267 (292)
91 2uy1_A Cleavage stimulation fa 99.0 5.3E-07 1.8E-11 89.8 30.4 343 120-489 28-412 (493)
92 2fo7_A Synthetic consensus TPR 99.0 2.5E-08 8.5E-13 80.0 16.9 123 324-449 8-130 (136)
93 3qky_A Outer membrane assembly 99.0 4.5E-08 1.5E-12 89.1 20.0 184 245-449 14-222 (261)
94 3mv2_B Coatomer subunit epsilo 99.0 3.8E-07 1.3E-11 83.3 24.5 78 195-273 85-163 (310)
95 3qky_A Outer membrane assembly 98.9 7.4E-08 2.5E-12 87.7 19.7 210 279-513 12-250 (261)
96 3urz_A Uncharacterized protein 98.9 8E-08 2.7E-12 84.1 18.8 74 358-433 60-133 (208)
97 2pzi_A Probable serine/threoni 98.9 7E-08 2.4E-12 100.6 21.5 191 293-494 402-606 (681)
98 3urz_A Uncharacterized protein 98.9 4.6E-08 1.6E-12 85.7 17.0 174 282-467 4-196 (208)
99 2ifu_A Gamma-SNAP; membrane fu 98.9 3.7E-08 1.3E-12 92.1 16.0 162 319-483 78-254 (307)
100 2pzi_A Probable serine/threoni 98.9 9.5E-08 3.2E-12 99.7 19.2 185 257-448 402-602 (681)
101 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.3E-07 7.9E-12 82.3 19.1 191 281-496 3-219 (225)
102 3dra_A Protein farnesyltransfe 98.8 3.5E-06 1.2E-10 77.7 27.0 223 187-415 44-286 (306)
103 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.1E-07 1.4E-11 80.7 20.3 186 245-449 3-211 (225)
104 2r5s_A Uncharacterized protein 98.8 5.2E-08 1.8E-12 82.8 13.8 78 371-449 93-171 (176)
105 2r5s_A Uncharacterized protein 98.8 9.4E-08 3.2E-12 81.2 15.2 159 320-488 9-171 (176)
106 4ga2_A E3 SUMO-protein ligase 98.8 1.3E-08 4.5E-13 83.9 9.1 135 364-506 9-145 (150)
107 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4.1E-12 88.6 16.5 182 295-493 29-226 (307)
108 3qou_A Protein YBBN; thioredox 98.8 2.8E-07 9.6E-12 85.1 18.1 166 281-449 116-282 (287)
109 4ga2_A E3 SUMO-protein ligase 98.8 6E-08 2E-12 79.9 12.1 141 292-436 7-148 (150)
110 3qou_A Protein YBBN; thioredox 98.8 2.8E-07 9.5E-12 85.1 17.9 164 315-488 115-282 (287)
111 3dra_A Protein farnesyltransfe 98.8 5.4E-06 1.8E-10 76.4 26.3 227 264-500 51-298 (306)
112 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.5E-12 96.7 16.9 151 295-449 2-155 (568)
113 3rjv_A Putative SEL1 repeat pr 98.8 7.4E-07 2.5E-11 78.1 19.2 176 194-382 4-198 (212)
114 2uy1_A Cleavage stimulation fa 98.8 7E-06 2.4E-10 81.7 28.3 345 84-450 28-412 (493)
115 3rjv_A Putative SEL1 repeat pr 98.8 1.9E-06 6.4E-11 75.5 21.3 163 174-348 16-199 (212)
116 2vsy_A XCC0866; transferase, g 98.7 5.6E-07 1.9E-11 92.0 18.3 150 120-274 3-156 (568)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.2E-06 7.6E-11 74.9 18.3 134 357-495 11-155 (213)
118 3u3w_A Transcriptional activat 98.6 6E-06 2.1E-10 76.4 22.1 95 355-449 158-264 (293)
119 3u3w_A Transcriptional activat 98.6 8.4E-06 2.9E-10 75.4 22.8 167 323-489 81-265 (293)
120 3gyz_A Chaperone protein IPGC; 98.6 6.2E-07 2.1E-11 73.5 12.7 94 354-449 38-131 (151)
121 3dss_A Geranylgeranyl transfer 98.6 3.2E-05 1.1E-09 71.7 25.3 197 298-505 90-319 (331)
122 4gco_A Protein STI-1; structur 98.6 9.2E-07 3.1E-11 70.2 13.1 93 355-449 16-108 (126)
123 1a17_A Serine/threonine protei 98.6 5.1E-06 1.8E-10 69.1 17.5 127 320-449 16-144 (166)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5.3E-06 1.8E-10 72.5 18.2 100 210-310 36-149 (213)
125 4gco_A Protein STI-1; structur 98.5 2E-06 6.7E-11 68.2 13.7 110 388-504 14-124 (126)
126 3q7a_A Farnesyltransferase alp 98.5 4.9E-05 1.7E-09 70.8 24.9 231 179-415 57-330 (349)
127 1na0_A Designed protein CTPR3; 98.5 2.3E-06 8E-11 67.1 13.9 112 388-505 10-121 (125)
128 3gyz_A Chaperone protein IPGC; 98.5 6E-07 2.1E-11 73.6 10.5 103 386-495 35-138 (151)
129 2qfc_A PLCR protein; TPR, HTH, 98.5 1.7E-05 5.9E-10 73.2 21.7 166 284-449 77-264 (293)
130 2qfc_A PLCR protein; TPR, HTH, 98.5 8.2E-06 2.8E-10 75.5 19.4 171 319-489 77-265 (293)
131 2c2l_A CHIP, carboxy terminus 98.5 1.9E-06 6.4E-11 79.2 13.6 97 246-345 4-100 (281)
132 3gw4_A Uncharacterized protein 98.5 1.9E-06 6.4E-11 74.6 12.9 120 294-414 4-134 (203)
133 2e2e_A Formate-dependent nitri 98.5 2.2E-06 7.5E-11 72.6 12.7 116 331-449 24-142 (177)
134 1na0_A Designed protein CTPR3; 98.5 1.1E-05 3.6E-10 63.2 16.0 60 355-415 46-105 (125)
135 4f3v_A ESX-1 secretion system 98.4 1.4E-06 4.9E-11 78.4 11.7 141 356-504 106-250 (282)
136 1a17_A Serine/threonine protei 98.4 5.6E-06 1.9E-10 68.9 14.8 96 177-274 14-109 (166)
137 2vyi_A SGTA protein; chaperone 98.4 5.1E-06 1.7E-10 65.8 13.7 112 389-507 14-126 (131)
138 2lni_A Stress-induced-phosphop 98.4 4.2E-06 1.4E-10 66.6 13.1 115 386-507 15-130 (133)
139 3q7a_A Farnesyltransferase alp 98.4 0.00013 4.4E-09 68.0 24.6 233 223-488 66-329 (349)
140 2vgx_A Chaperone SYCD; alterna 98.4 1.1E-06 3.9E-11 71.9 9.5 99 388-493 22-121 (148)
141 1p5q_A FKBP52, FK506-binding p 98.4 1.1E-05 3.7E-10 76.2 17.4 146 281-449 146-292 (336)
142 2vyi_A SGTA protein; chaperone 98.4 8.9E-06 3E-10 64.3 14.5 115 354-476 14-129 (131)
143 3gw4_A Uncharacterized protein 98.4 3.1E-06 1.1E-10 73.3 12.6 116 156-273 5-134 (203)
144 2vgx_A Chaperone SYCD; alterna 98.4 1.9E-06 6.4E-11 70.6 10.5 95 353-449 22-116 (148)
145 4f3v_A ESX-1 secretion system 98.4 9.8E-06 3.3E-10 73.0 15.8 189 82-274 18-236 (282)
146 2e2e_A Formate-dependent nitri 98.4 3.6E-06 1.2E-10 71.2 12.4 126 363-496 21-150 (177)
147 3upv_A Heat shock protein STI1 98.4 1E-05 3.5E-10 63.9 14.1 94 354-449 6-99 (126)
148 2c2l_A CHIP, carboxy terminus 98.4 3.8E-06 1.3E-10 77.2 12.9 98 105-205 3-101 (281)
149 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.7E-10 61.8 14.2 108 388-502 5-113 (118)
150 2lni_A Stress-induced-phosphop 98.3 8.9E-06 3E-10 64.7 13.1 95 282-378 16-110 (133)
151 3q49_B STIP1 homology and U bo 98.3 1.9E-05 6.7E-10 63.2 14.6 95 353-449 10-104 (137)
152 1p5q_A FKBP52, FK506-binding p 98.3 1.7E-05 5.7E-10 74.9 16.0 157 225-406 127-283 (336)
153 2fbn_A 70 kDa peptidylprolyl i 98.3 2.6E-06 8.9E-11 73.7 9.5 95 353-449 89-184 (198)
154 2fbn_A 70 kDa peptidylprolyl i 98.3 2.1E-06 7.1E-11 74.3 8.5 148 150-301 11-175 (198)
155 2kck_A TPR repeat; tetratricop 98.3 7E-06 2.4E-10 62.9 10.7 101 387-494 6-110 (112)
156 2xcb_A PCRH, regulatory protei 98.3 9.8E-06 3.4E-10 65.7 11.9 91 357-449 23-113 (142)
157 3upv_A Heat shock protein STI1 98.3 1.2E-05 4.3E-10 63.4 12.2 112 387-505 4-122 (126)
158 1elw_A TPR1-domain of HOP; HOP 98.3 4.5E-05 1.5E-09 58.8 15.3 94 354-449 6-99 (118)
159 1hxi_A PEX5, peroxisome target 98.2 2E-05 6.8E-10 61.8 12.8 93 355-449 20-112 (121)
160 4gcn_A Protein STI-1; structur 98.2 1.7E-05 5.8E-10 62.8 12.3 105 354-465 10-120 (127)
161 3dss_A Geranylgeranyl transfer 98.2 0.00038 1.3E-08 64.5 23.0 131 160-294 91-239 (331)
162 2xcb_A PCRH, regulatory protei 98.2 1.3E-05 4.4E-10 65.0 11.5 104 386-496 17-121 (142)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 1.8E-05 6.1E-10 65.9 12.3 94 354-449 13-106 (164)
164 4gcn_A Protein STI-1; structur 98.2 7E-06 2.4E-10 65.1 9.2 105 388-495 9-117 (127)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 2.5E-05 8.4E-10 65.1 12.6 100 388-494 12-112 (164)
166 4b4t_Q 26S proteasome regulato 98.2 6E-05 2E-09 73.8 17.4 55 255-309 13-82 (434)
167 3q49_B STIP1 homology and U bo 98.2 2.7E-05 9.2E-10 62.4 12.4 102 385-493 7-109 (137)
168 1elr_A TPR2A-domain of HOP; HO 98.2 2.7E-05 9.2E-10 61.5 12.1 94 355-449 7-106 (131)
169 1elr_A TPR2A-domain of HOP; HO 98.1 1.7E-05 5.9E-10 62.6 10.8 116 387-506 4-123 (131)
170 2kck_A TPR repeat; tetratricop 98.1 4.1E-05 1.4E-09 58.5 12.3 96 212-310 7-105 (112)
171 4b4t_Q 26S proteasome regulato 98.1 0.0003 1E-08 68.8 21.4 198 218-415 11-244 (434)
172 1hxi_A PEX5, peroxisome target 98.1 2.2E-05 7.7E-10 61.5 10.4 99 389-494 19-118 (121)
173 2dba_A Smooth muscle cell asso 98.1 0.00017 5.8E-09 58.3 15.6 60 355-415 68-127 (148)
174 2dba_A Smooth muscle cell asso 98.0 0.00016 5.3E-09 58.5 14.5 94 353-449 29-126 (148)
175 1wao_1 Serine/threonine protei 98.0 7.2E-05 2.5E-09 74.2 14.5 116 328-446 17-134 (477)
176 3ro3_A PINS homolog, G-protein 98.0 8.3E-05 2.9E-09 61.1 12.7 61 284-344 11-76 (164)
177 3ro3_A PINS homolog, G-protein 98.0 6.8E-05 2.3E-09 61.6 11.7 131 319-449 11-156 (164)
178 1dce_A Protein (RAB geranylger 98.0 0.00037 1.3E-08 70.5 18.8 172 333-513 45-244 (567)
179 2xev_A YBGF; tetratricopeptide 98.0 0.00021 7.1E-09 56.3 13.6 59 390-449 42-103 (129)
180 2xev_A YBGF; tetratricopeptide 97.9 0.00051 1.8E-08 53.9 15.8 93 324-416 9-105 (129)
181 3rkv_A Putative peptidylprolyl 97.9 0.0001 3.6E-09 61.0 11.9 62 387-449 63-124 (162)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00022 7.4E-09 70.4 15.7 145 282-449 268-413 (457)
183 3rkv_A Putative peptidylprolyl 97.9 0.00011 3.9E-09 60.8 11.7 115 389-509 13-146 (162)
184 3k9i_A BH0479 protein; putativ 97.9 2.2E-05 7.6E-10 61.0 6.9 84 365-449 3-88 (117)
185 1wao_1 Serine/threonine protei 97.8 7.6E-05 2.6E-09 74.0 10.8 120 358-485 12-134 (477)
186 2hr2_A Hypothetical protein; a 97.8 0.00065 2.2E-08 55.1 14.1 77 389-465 59-146 (159)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00047 1.6E-08 68.0 15.6 158 225-407 248-405 (457)
188 1dce_A Protein (RAB geranylger 97.8 0.0016 5.5E-08 65.8 19.5 173 297-479 44-244 (567)
189 1ihg_A Cyclophilin 40; ppiase 97.7 0.00049 1.7E-08 65.6 14.6 89 353-443 274-362 (370)
190 3k9i_A BH0479 protein; putativ 97.7 4.8E-05 1.7E-09 59.1 6.0 60 213-273 29-88 (117)
191 1zu2_A Mitochondrial import re 97.7 0.00015 5.1E-09 58.7 8.6 100 364-471 14-134 (158)
192 1ihg_A Cyclophilin 40; ppiase 97.7 0.00031 1.1E-08 67.0 12.4 83 422-510 273-356 (370)
193 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00011 3.7E-09 69.3 9.0 151 318-494 180-332 (338)
194 2if4_A ATFKBP42; FKBP-like, al 97.6 0.0001 3.5E-09 69.5 7.9 147 282-449 179-326 (338)
195 2hr2_A Hypothetical protein; a 97.6 0.0012 4.1E-08 53.6 12.2 61 354-415 59-130 (159)
196 2l6j_A TPR repeat-containing p 97.6 0.0007 2.4E-08 51.4 10.7 93 421-519 3-102 (111)
197 2l6j_A TPR repeat-containing p 97.6 0.00049 1.7E-08 52.3 9.5 92 386-484 3-101 (111)
198 2kat_A Uncharacterized protein 97.5 0.0005 1.7E-08 52.9 9.2 78 370-449 3-80 (115)
199 3n71_A Histone lysine methyltr 97.4 0.0021 7.3E-08 63.3 14.4 125 326-450 318-463 (490)
200 3n71_A Histone lysine methyltr 97.4 0.0018 6.2E-08 63.9 13.9 125 291-415 318-463 (490)
201 1klx_A Cysteine rich protein B 97.4 0.0037 1.3E-07 49.9 13.3 109 191-311 10-126 (138)
202 1klx_A Cysteine rich protein B 97.3 0.0029 1E-07 50.5 11.5 111 120-241 9-127 (138)
203 1na3_A Designed protein CTPR2; 97.3 0.0032 1.1E-07 45.5 10.7 62 354-416 11-72 (91)
204 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.7E-08 49.0 8.1 63 386-449 6-68 (100)
205 1na3_A Designed protein CTPR2; 97.2 0.0017 5.8E-08 47.1 8.4 81 421-507 8-89 (91)
206 2kat_A Uncharacterized protein 97.2 0.0046 1.6E-07 47.3 11.3 78 336-415 4-81 (115)
207 3lvg_A Clathrin heavy chain 1; 97.2 0.0001 3.5E-09 69.9 1.6 396 69-505 53-523 (624)
208 1zu2_A Mitochondrial import re 97.1 0.00092 3.2E-08 54.1 6.4 99 398-504 13-133 (158)
209 3ly7_A Transcriptional activat 97.1 0.017 5.9E-07 53.7 15.5 144 313-465 190-347 (372)
210 3mkq_A Coatomer beta'-subunit; 96.9 0.031 1.1E-06 59.4 18.5 46 292-343 662-707 (814)
211 3ma5_A Tetratricopeptide repea 96.8 0.0038 1.3E-07 46.5 7.2 64 175-239 6-69 (100)
212 2kc7_A BFR218_protein; tetratr 96.8 0.0094 3.2E-07 43.9 9.4 56 360-416 8-64 (99)
213 3ly7_A Transcriptional activat 96.8 0.031 1.1E-06 52.0 14.3 134 102-240 190-339 (372)
214 2kc7_A BFR218_protein; tetratr 96.6 0.0018 6E-08 48.1 3.9 55 394-449 7-62 (99)
215 3bee_A Putative YFRE protein; 96.2 0.041 1.4E-06 40.1 9.5 63 386-449 5-70 (93)
216 3qww_A SET and MYND domain-con 96.2 0.035 1.2E-06 53.7 11.4 63 353-415 341-410 (433)
217 3qww_A SET and MYND domain-con 96.0 0.03 1E-06 54.2 10.3 85 366-450 312-410 (433)
218 3mkq_A Coatomer beta'-subunit; 96.0 0.14 4.8E-06 54.3 16.3 47 152-202 661-707 (814)
219 3qwp_A SET and MYND domain-con 96.0 0.059 2E-06 52.1 12.0 61 354-414 331-398 (429)
220 1pc2_A Mitochondria fission pr 95.9 0.042 1.4E-06 43.9 8.6 77 371-449 17-98 (152)
221 3mkq_B Coatomer subunit alpha; 95.9 0.51 1.7E-05 38.7 15.2 99 292-411 15-113 (177)
222 1wy6_A Hypothetical protein ST 95.9 0.44 1.5E-05 36.7 16.7 140 257-419 18-157 (172)
223 3qwp_A SET and MYND domain-con 95.7 0.06 2.1E-06 52.1 10.8 100 364-464 299-412 (429)
224 3bee_A Putative YFRE protein; 95.6 0.1 3.4E-06 38.0 9.3 81 420-507 4-88 (93)
225 1pc2_A Mitochondria fission pr 95.3 0.16 5.4E-06 40.5 10.0 89 403-497 14-107 (152)
226 2v5f_A Prolyl 4-hydroxylase su 95.0 0.21 7.3E-06 37.1 9.6 61 389-449 7-73 (104)
227 3mkq_B Coatomer subunit alpha; 94.7 1.5 5.2E-05 35.9 16.1 105 150-273 12-116 (177)
228 2v5f_A Prolyl 4-hydroxylase su 94.6 0.28 9.6E-06 36.4 9.4 78 421-498 4-83 (104)
229 3u64_A Protein TP_0956; tetrat 94.4 0.28 9.7E-06 43.7 10.2 65 354-418 201-271 (301)
230 3u64_A Protein TP_0956; tetrat 94.3 0.39 1.3E-05 42.9 10.9 85 262-349 179-272 (301)
231 4b4t_P 26S proteasome regulato 94.1 4.3 0.00015 39.2 19.1 187 190-378 30-244 (445)
232 1nzn_A CGI-135 protein, fissio 94.1 0.6 2.1E-05 35.8 10.2 89 402-496 16-109 (126)
233 4h7y_A Dual specificity protei 94.1 0.77 2.6E-05 36.2 10.8 53 366-419 74-126 (161)
234 1wy6_A Hypothetical protein ST 93.8 1.8 6.2E-05 33.4 15.3 140 222-384 18-157 (172)
235 4h7y_A Dual specificity protei 93.7 0.93 3.2E-05 35.8 10.5 48 401-449 74-121 (161)
236 1v54_E Cytochrome C oxidase po 93.3 0.88 3E-05 32.9 9.0 65 437-505 25-89 (109)
237 4b4t_P 26S proteasome regulato 92.7 7.4 0.00025 37.6 18.8 55 225-279 30-89 (445)
238 1nzn_A CGI-135 protein, fissio 91.8 0.78 2.7E-05 35.1 7.8 82 367-449 16-101 (126)
239 4gns_B Protein CSD3, chitin bi 91.8 2.1 7.1E-05 44.2 13.3 54 395-449 345-398 (754)
240 3lvg_A Clathrin heavy chain 1; 91.1 6.1E-05 2.1E-09 71.4 -18.7 200 284-507 56-275 (624)
241 2y69_E Cytochrome C oxidase su 90.6 2.2 7.6E-05 32.7 9.0 65 437-505 68-132 (152)
242 4ady_A RPN2, 26S proteasome re 90.3 21 0.0007 37.8 21.6 310 186-513 384-724 (963)
243 2ff4_A Probable regulatory pro 90.2 1.1 3.7E-05 42.6 9.1 75 389-464 173-248 (388)
244 4gns_B Protein CSD3, chitin bi 89.2 3.3 0.00011 42.7 12.1 125 180-308 252-397 (754)
245 2p58_C Putative type III secre 87.3 5.7 0.00019 28.7 8.6 79 120-206 21-99 (116)
246 2ff4_A Probable regulatory pro 87.3 2.3 8E-05 40.2 9.2 71 214-285 174-248 (388)
247 4fhn_B Nucleoporin NUP120; pro 86.5 18 0.00062 39.8 16.9 80 355-436 902-985 (1139)
248 2uwj_G Type III export protein 86.5 5.4 0.00018 28.7 8.1 79 120-206 20-98 (115)
249 1v54_E Cytochrome C oxidase po 86.3 5.8 0.0002 28.7 8.3 46 370-415 28-73 (109)
250 3ffl_A Anaphase-promoting comp 83.4 9.1 0.00031 30.8 9.3 61 74-135 24-92 (167)
251 4fhn_B Nucleoporin NUP120; pro 83.0 36 0.0012 37.4 17.2 86 249-336 902-990 (1139)
252 3o48_A Mitochondria fission 1 82.9 14 0.00048 28.4 11.0 65 385-449 38-105 (134)
253 1wdy_A 2-5A-dependent ribonucl 82.9 6 0.00021 35.0 9.5 19 150-168 43-61 (285)
254 3o48_A Mitochondria fission 1 81.5 16 0.00055 28.1 10.2 74 417-496 35-113 (134)
255 3ffl_A Anaphase-promoting comp 80.7 5.8 0.0002 31.9 7.2 24 391-414 126-149 (167)
256 2y69_E Cytochrome C oxidase su 80.4 12 0.0004 28.8 8.3 46 371-416 72-117 (152)
257 2wpv_A GET4, UPF0363 protein Y 79.0 37 0.0013 30.7 19.5 26 386-411 133-158 (312)
258 4b4t_R RPN7, 26S proteasome re 78.3 21 0.00072 34.2 12.0 97 284-380 133-236 (429)
259 1zbp_A Hypothetical protein VP 75.4 30 0.001 30.4 10.7 117 361-492 6-131 (273)
260 1zbp_A Hypothetical protein VP 74.2 9.2 0.00032 33.6 7.2 54 395-449 5-58 (273)
261 4b4t_R RPN7, 26S proteasome re 74.1 26 0.0009 33.5 11.4 99 212-310 132-236 (429)
262 1wdy_A 2-5A-dependent ribonucl 74.0 12 0.00041 32.9 8.6 15 153-167 12-26 (285)
263 2wpv_A GET4, UPF0363 protein Y 73.0 54 0.0018 29.6 21.5 25 245-269 133-157 (312)
264 1k1a_A B-cell lymphoma 3-encod 72.6 10 0.00035 32.5 7.5 23 114-136 14-36 (241)
265 1n11_A Ankyrin; clathrin, BAND 72.3 13 0.00045 35.5 9.0 291 93-421 29-338 (437)
266 4g8k_A 2-5A-dependent ribonucl 71.6 33 0.0011 31.1 11.3 15 153-167 66-80 (337)
267 3lpz_A GET4 (YOR164C homolog); 70.9 63 0.0021 29.5 20.4 167 179-379 38-214 (336)
268 3eiq_C Programmed cell death p 70.4 45 0.0016 30.8 11.4 64 320-384 220-285 (358)
269 4g8k_A 2-5A-dependent ribonucl 69.8 48 0.0016 30.0 11.9 54 74-136 26-82 (337)
270 3eu9_A Huntingtin-interacting 69.4 16 0.00053 31.1 8.0 17 361-377 216-232 (240)
271 3txn_A 26S proteasome regulato 68.9 77 0.0026 29.7 22.1 168 246-414 19-208 (394)
272 1y8m_A FIS1; mitochondria, unk 68.5 40 0.0014 26.3 11.5 21 429-449 84-104 (144)
273 1k1a_A B-cell lymphoma 3-encod 68.2 36 0.0012 28.8 10.2 84 184-271 14-101 (241)
274 1y8m_A FIS1; mitochondria, unk 67.1 43 0.0015 26.1 12.7 72 419-496 36-112 (144)
275 3esl_A Checkpoint serine/threo 64.6 53 0.0018 27.3 9.5 53 333-385 95-148 (202)
276 3txn_A 26S proteasome regulato 63.1 1E+02 0.0034 29.0 23.3 168 211-379 19-208 (394)
277 3eiq_C Programmed cell death p 62.0 42 0.0014 31.0 9.4 26 178-203 56-81 (358)
278 3eu9_A Huntingtin-interacting 59.5 18 0.00063 30.7 6.5 53 359-415 181-235 (240)
279 3esl_A Checkpoint serine/threo 57.6 82 0.0028 26.2 10.4 68 178-246 82-150 (202)
280 3b7b_A Euchromatic histone-lys 56.8 14 0.00048 31.5 5.2 19 327-345 217-235 (237)
281 2nsz_A Programmed cell death p 56.7 49 0.0017 25.2 7.6 22 392-413 12-33 (129)
282 3hra_A Ankyrin repeat family p 56.3 24 0.00082 29.0 6.5 14 154-167 13-26 (201)
283 3kea_A K1L; tropism, ANK repea 56.1 36 0.0012 30.1 8.0 18 150-167 66-83 (285)
284 3aji_A 26S proteasome non-ATPa 53.4 30 0.001 29.2 6.8 23 290-316 177-199 (231)
285 3ltm_A Alpha-REP4; protein eng 52.3 98 0.0034 25.5 19.8 92 89-191 19-110 (211)
286 2uwj_G Type III export protein 52.0 64 0.0022 23.3 6.8 76 226-310 21-96 (115)
287 2qx5_A Nucleoporin NIC96; mRNA 51.8 2.1E+02 0.007 29.1 15.1 81 216-308 299-382 (661)
288 2p58_C Putative type III secre 51.5 66 0.0023 23.3 7.5 47 256-309 50-96 (116)
289 1n11_A Ankyrin; clathrin, BAND 51.3 54 0.0018 31.1 8.9 294 112-442 17-328 (437)
290 2ion_A PDCD4, programmed cell 50.0 68 0.0023 25.3 7.6 24 355-378 12-35 (152)
291 3t8k_A Uncharacterized protein 49.8 1E+02 0.0035 25.0 9.6 93 153-246 13-109 (186)
292 3b7b_A Euchromatic histone-lys 49.6 19 0.00065 30.6 4.9 23 358-380 213-235 (237)
293 3hra_A Ankyrin repeat family p 49.3 16 0.00054 30.2 4.2 19 150-168 76-94 (201)
294 3t8k_A Uncharacterized protein 49.0 93 0.0032 25.3 8.9 27 290-316 43-69 (186)
295 1qsa_A Protein (soluble lytic 48.4 2.3E+02 0.0077 28.5 29.2 114 226-345 229-347 (618)
296 2zu6_B Programmed cell death p 47.0 1.3E+02 0.0046 26.9 10.0 26 179-204 6-31 (307)
297 4ady_A RPN2, 26S proteasome re 46.9 2.9E+02 0.0099 29.4 29.8 252 152-415 383-657 (963)
298 3mv2_A Coatomer subunit alpha; 46.3 1.7E+02 0.0057 26.4 12.3 56 437-496 185-242 (325)
299 3jxi_A Vanilloid receptor-rela 45.7 20 0.00067 31.2 4.4 54 79-133 11-73 (260)
300 3kea_A K1L; tropism, ANK repea 44.6 36 0.0012 30.2 6.0 54 69-128 28-81 (285)
301 2ion_A PDCD4, programmed cell 42.8 1E+02 0.0034 24.3 7.6 24 321-344 13-36 (152)
302 3ljn_A Hypothetical protein; a 42.5 64 0.0022 29.6 7.7 54 149-204 56-109 (364)
303 3jxi_A Vanilloid receptor-rela 41.3 27 0.00091 30.3 4.5 51 221-271 12-71 (260)
304 3lpz_A GET4 (YOR164C homolog); 40.8 2.1E+02 0.0072 26.0 25.0 163 150-345 42-215 (336)
305 2nsz_A Programmed cell death p 40.0 1.2E+02 0.0041 23.0 8.9 22 322-343 12-33 (129)
306 2rfa_A Transient receptor pote 39.1 1.2E+02 0.0041 25.2 8.4 19 360-378 202-220 (232)
307 3mkr_B Coatomer subunit alpha; 38.6 2.1E+02 0.0073 25.7 9.7 54 439-496 178-233 (320)
308 4a1g_A Mitotic checkpoint seri 37.7 1.5E+02 0.0051 23.4 9.2 27 284-310 103-129 (152)
309 3ljn_A Hypothetical protein; a 37.1 1.8E+02 0.006 26.5 9.8 19 394-412 248-266 (364)
310 3mwm_A ZUR, putative metal upt 37.0 72 0.0025 24.6 5.9 48 74-122 17-64 (139)
311 2d2s_A Exocyst complex compone 36.7 2E+02 0.0069 24.6 9.9 90 357-449 23-118 (235)
312 2fe3_A Peroxide operon regulat 36.5 1.4E+02 0.0048 23.1 7.6 62 95-159 11-72 (145)
313 3aji_A 26S proteasome non-ATPa 36.3 1.1E+02 0.0038 25.4 7.7 14 187-200 14-27 (231)
314 2yru_A Steroid receptor RNA ac 35.7 1.3E+02 0.0046 22.4 6.8 45 92-136 47-91 (118)
315 3utm_A Tankyrase-1; tankyrase, 35.0 2.4E+02 0.0083 25.1 12.7 20 149-168 61-80 (351)
316 3mv2_A Coatomer subunit alpha; 33.5 2.7E+02 0.0092 25.1 9.5 50 369-418 187-238 (325)
317 4a1g_A Mitotic checkpoint seri 33.4 1.8E+02 0.006 22.9 9.6 54 193-246 82-136 (152)
318 2o03_A Probable zinc uptake re 33.2 80 0.0028 24.0 5.6 46 75-121 15-60 (131)
319 2zu6_B Programmed cell death p 32.9 2.7E+02 0.0093 24.9 12.0 69 390-463 169-239 (307)
320 1bd8_A P19INK4D CDK4/6 inhibit 32.8 62 0.0021 25.0 5.1 14 257-270 109-122 (156)
321 2rfa_A Transient receptor pote 32.7 1.4E+02 0.0047 24.9 7.7 20 293-312 162-181 (232)
322 2ijq_A Hypothetical protein; s 32.7 1.9E+02 0.0064 23.0 7.7 51 295-345 45-103 (161)
323 4fke_A Aminopeptidase N; zinc 32.6 4.7E+02 0.016 27.7 18.3 164 321-491 690-861 (909)
324 1mzb_A Ferric uptake regulatio 32.4 1E+02 0.0035 23.6 6.1 58 98-158 10-68 (136)
325 2d2s_A Exocyst complex compone 32.2 2.4E+02 0.0081 24.1 10.3 29 385-413 89-117 (235)
326 1mzb_A Ferric uptake regulatio 32.1 1.4E+02 0.0047 22.8 6.8 50 73-123 20-70 (136)
327 3twr_A Tankyrase-2; ankyrin re 31.6 1.4E+02 0.0046 23.2 7.1 17 151-167 13-29 (165)
328 2b7e_A PRE-mRNA processing pro 31.6 53 0.0018 21.0 3.4 32 193-224 3-35 (59)
329 2f8y_A Notch homolog 1, transl 31.3 1.5E+02 0.0053 24.3 7.8 12 93-104 40-51 (223)
330 3bu8_A Telomeric repeat-bindin 30.8 2.1E+02 0.0073 24.0 7.6 22 428-449 120-141 (235)
331 3qye_A TBC1 domain family memb 30.5 1.9E+02 0.0065 26.1 8.6 94 127-225 209-308 (331)
332 3pvs_A Replication-associated 30.2 3.6E+02 0.012 25.6 14.9 22 330-351 268-289 (447)
333 3f3f_C Nucleoporin NUP85; stru 30.1 1.9E+02 0.0067 28.4 8.6 87 320-408 482-570 (570)
334 2fe3_A Peroxide operon regulat 29.8 1.1E+02 0.0037 23.7 5.9 49 73-122 24-72 (145)
335 2yru_A Steroid receptor RNA ac 29.8 70 0.0024 24.0 4.4 42 198-239 48-89 (118)
336 2ko4_A Mediator of RNA polymer 29.7 39 0.0013 23.0 2.6 39 163-201 23-61 (81)
337 3bge_A Predicted ATPase; struc 29.7 2.4E+02 0.0082 23.3 8.5 22 295-316 20-41 (201)
338 2r9g_A AAA ATPase, central reg 29.7 2.4E+02 0.0082 23.4 10.7 33 331-364 28-60 (204)
339 4aez_C MAD3, mitotic spindle c 29.3 2.6E+02 0.0089 23.6 8.3 53 193-245 131-184 (223)
340 4b4t_S RPN3, 26S proteasome re 29.3 1.3E+02 0.0045 29.3 7.3 121 176-307 231-366 (523)
341 1ug3_A EIF4GI, eukaryotic prot 29.2 2.5E+02 0.0087 25.5 9.2 26 146-171 14-39 (339)
342 3e3v_A Regulatory protein RECX 29.2 2.3E+02 0.0077 22.9 10.0 50 193-243 50-99 (177)
343 3rjo_A Endoplasmic reticulum a 29.1 3.6E+02 0.012 25.3 23.3 145 321-474 201-353 (419)
344 2wvi_A Mitotic checkpoint seri 29.0 2.2E+02 0.0076 22.7 10.2 55 193-247 77-132 (164)
345 2w57_A Ferric uptake regulatio 28.9 1.3E+02 0.0044 23.5 6.2 62 95-159 6-68 (150)
346 2f8y_A Notch homolog 1, transl 28.7 2.2E+02 0.0075 23.3 8.3 19 150-168 62-80 (223)
347 2b7e_A PRE-mRNA processing pro 28.6 66 0.0023 20.6 3.4 29 299-327 3-31 (59)
348 2xig_A Ferric uptake regulatio 28.6 1E+02 0.0036 24.1 5.6 61 96-159 17-77 (150)
349 3eyy_A Putative iron uptake re 27.9 1.9E+02 0.0064 22.4 6.9 60 96-159 9-68 (145)
350 3ltm_A Alpha-REP4; protein eng 27.6 2.5E+02 0.0085 22.9 20.1 47 143-191 33-79 (211)
351 4b4t_S RPN3, 26S proteasome re 27.0 4.5E+02 0.015 25.6 11.3 124 211-343 231-367 (523)
352 2fu4_A Ferric uptake regulatio 26.9 1.5E+02 0.005 20.0 5.8 60 97-159 8-68 (83)
353 3eyy_A Putative iron uptake re 26.9 1.1E+02 0.0038 23.7 5.4 48 73-122 21-68 (145)
354 2w57_A Ferric uptake regulatio 26.8 1.2E+02 0.0041 23.7 5.6 50 73-123 19-69 (150)
355 3ltj_A Alpharep-4; protein eng 26.7 2.5E+02 0.0086 22.6 21.7 17 281-297 151-167 (201)
356 1qsa_A Protein (soluble lytic 26.3 5.1E+02 0.017 26.0 34.4 336 127-484 57-436 (618)
357 2qfz_A TBC1 domain family memb 25.8 1.9E+02 0.0064 26.4 7.7 74 127-202 230-312 (345)
358 2ijq_A Hypothetical protein; s 25.7 2.5E+02 0.0086 22.3 7.2 53 398-450 43-103 (161)
359 4ets_A Ferric uptake regulatio 25.7 1.6E+02 0.0054 23.4 6.2 47 321-367 36-84 (162)
360 3d9h_A CDNA FLJ77766, highly s 25.3 2.1E+02 0.0072 24.9 7.8 14 290-303 227-240 (285)
361 3ctd_A Putative ATPase, AAA fa 25.3 3E+02 0.01 23.0 9.7 22 331-352 49-70 (213)
362 2qx5_A Nucleoporin NIC96; mRNA 24.5 3.4E+02 0.012 27.5 9.6 45 177-223 154-198 (661)
363 2pnn_A Transient receptor pote 24.5 85 0.0029 27.2 4.9 63 68-132 9-80 (273)
364 2r9g_A AAA ATPase, central reg 24.5 3E+02 0.01 22.8 10.0 38 294-332 26-63 (204)
365 4ets_A Ferric uptake regulatio 23.9 1.3E+02 0.0043 24.0 5.3 69 89-160 15-86 (162)
366 2y1l_E Darpin-8.4; hydrolase-i 23.8 2.6E+02 0.0087 21.7 7.8 16 152-167 53-68 (169)
367 2pnn_A Transient receptor pote 23.1 51 0.0017 28.7 3.1 15 471-485 240-254 (273)
368 3bge_A Predicted ATPase; struc 22.7 3.3E+02 0.011 22.5 7.9 35 331-365 21-55 (201)
369 3ygs_P Procaspase 9; apoptosis 22.2 1.2E+02 0.0042 21.6 4.4 13 193-205 54-66 (97)
370 3ygs_P Procaspase 9; apoptosis 21.9 88 0.003 22.3 3.6 37 158-196 52-88 (97)
371 2wvi_A Mitotic checkpoint seri 21.8 3.1E+02 0.01 21.9 10.3 50 301-350 79-129 (164)
372 2qq8_A TBC1 domain family memb 21.7 2.3E+02 0.0078 25.7 7.3 43 127-171 214-256 (334)
373 1ug3_A EIF4GI, eukaryotic prot 21.7 4.5E+02 0.015 23.8 14.1 22 181-202 16-37 (339)
374 3bu8_A Telomeric repeat-bindin 21.6 2.3E+02 0.0079 23.8 6.3 38 467-504 120-157 (235)
375 2xai_A ASB-9, ankyrin repeat a 21.3 3.2E+02 0.011 23.2 8.1 10 293-302 142-151 (261)
376 1wgl_A TOLL-interacting protei 21.1 1.4E+02 0.0048 19.0 4.0 23 434-460 35-57 (59)
377 2xai_A ASB-9, ankyrin repeat a 21.1 3.6E+02 0.012 22.9 8.3 18 253-270 138-155 (261)
378 4aez_C MAD3, mitotic spindle c 20.9 3.8E+02 0.013 22.6 8.8 52 369-420 131-183 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-42 Score=359.91 Aligned_cols=474 Identities=8% Similarity=-0.074 Sum_probs=376.4
Q ss_pred CCCCCCCCccccccchhhhhhhhccCccceeecccccccccccc--------ccccccchHHHHHHHhccCCCCccHHHH
Q 009424 22 PLPCKIPRCFTRLHQQSAIKHQRQKLPVIKCSMSQIHSYGTVDF--------ERRPMIKWNAIFRKLSLMDNPQLGSASV 93 (535)
Q Consensus 22 ~~~c~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~n~li~~~~~~g~~~~~a~~~ 93 (535)
...|.....++++|+.....+....+.. .....+.++|.+.. +.+++..|+.++.+|.+.|+++ +|+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~ 106 (597)
T 2xpi_A 30 YMTPPSMGALNANNSNSQLSTLTISPMT--YLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYK-CAAFV 106 (597)
T ss_dssp ---------------CTTSCGGGGCGGG--GGC---------------------CHHHHHHHHHHHHHHTTCHH-HHHHH
T ss_pred hcCCccHHHHhhccccccccceeechhh--hhcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCch-HHHHH
Confidence 3345566667788888766555443322 22333455565442 3368889999999999999999 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-
Q 009424 94 LNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT- 172 (535)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~- 172 (535)
|++|.. ..||..++..++.+|.+.|++++|+++|+.+.. .+.+..+++.++.+|.++|++++|.++|+++...
T Consensus 107 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 180 (597)
T 2xpi_A 107 GEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL----YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180 (597)
T ss_dssp HHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG----GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC
T ss_pred HHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc----cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc
Confidence 999985 678999999999999999999999999998864 3567889999999999999999999999954331
Q ss_pred ----------------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHH---------------------
Q 009424 173 ----------------LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYN--------------------- 215 (535)
Q Consensus 173 ----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--------------------- 215 (535)
..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...|.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 259 (597)
T 2xpi_A 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLN 259 (597)
T ss_dssp ----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSC
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcC
Confidence 1258899999999999999999999999998864 11223322
Q ss_pred -----------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCC
Q 009424 216 -----------------VMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAV 278 (535)
Q Consensus 216 -----------------~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 278 (535)
.++..|.+.|++++|.++|+++.+. ++|..+++.++.+|.+.|++++|.++|+++.+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 335 (597)
T 2xpi_A 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-- 335 (597)
T ss_dssp THHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--
Confidence 2355566788899999999988776 5789999999999999999999999999998642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHH
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAM 358 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 358 (535)
+.+..+|+.++.+|.+.|++++|..+|+++.+. ...+..+|+.++.+|.+.|++++|+++|+++....+. +..+|+.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 457778999999999999999999999999754 3346778999999999999999999999999886443 45688999
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI 438 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 438 (535)
+.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCH
Confidence 99999999999999999999876543 7889999999999999999999999999886544 788999999999999999
Q ss_pred HHHHHHHHHhHHhccCCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 439 LEALSCLKGAFAAEGAKSWRPK--PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
++|+++|+++.+..++.+..|+ ..+|..+..+|.+.|++++|.++++++.+.++.....|..|..+|.+.|++++
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999854333467887 67899999999999999999999999998887766799999999999888887
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-39 Score=332.92 Aligned_cols=441 Identities=10% Similarity=0.040 Sum_probs=382.7
Q ss_pred ceeecccccccccccccc----------ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009424 50 IKCSMSQIHSYGTVDFER----------RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKF 119 (535)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~----------~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 119 (535)
.+.++..|.+.|....+. ||..+|+.+..+|.+.|+++ +|+.+|+.+.. ..++..++..++.++.+.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYA-RAKCLLTKEDL--YNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHH-HHHHHHHHTCG--GGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHH
Confidence 456667777777765332 78899999999999999999 99999999865 478999999999999999
Q ss_pred cChHHHHHHHHHHHhcC-------------CCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCC-CHHHHHH----
Q 009424 120 RRYKHALEVYDWMNNRG-------------ERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLK-DRRVYGA---- 181 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g-------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~~~---- 181 (535)
|++++|.++|+.+.... ...+.+..+++.++..|.+.|++++|.++|+++.+..| +...|..
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 243 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSN 243 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHh
Confidence 99999999998532111 00234578999999999999999999999999876533 3344333
Q ss_pred ----------------------------------HHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCCh
Q 009424 182 ----------------------------------LLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 182 ----------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 227 (535)
++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence 355677889999999999999876 57999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
++|+++|+++.+.+ +.+..+++.++.++.+.|++++|.++++.+.+. .+.+..+|+.++.+|.+.|++++|.++|++
T Consensus 322 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 322 IDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999876 347889999999999999999999999999863 366889999999999999999999999999
Q ss_pred HHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH
Q 009424 308 VESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP 387 (535)
Q Consensus 308 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 387 (535)
+.+.. +.+..+|+.++.+|.+.|++++|+++|+++....+. +..+|..++.+|.+.|++++|.++|+++.+..+. ++
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 98743 235779999999999999999999999999886543 5578999999999999999999999999887654 88
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC--HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEE----GGKPN--STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP 461 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~ 461 (535)
.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+ .+ +.+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-p~~~ 550 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL----LS-TNDA 550 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HS-SCCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hC-CCCh
Confidence 99999999999999999999999999876 66787 78999999999999999999999999993 22 3378
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhH
Q 009424 462 VNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTD 506 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~ 506 (535)
.+|..+..+|...|++++|.++++++.+..+.....+..|.++|.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 899999999999999999999999999999888889999988884
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.5e-32 Score=270.60 Aligned_cols=185 Identities=10% Similarity=0.005 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC---------HHHHHHHHHHHHhhCCCCchhhH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK---------KEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|...|..||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444444444444444444444444444444444444444444443322 45555555555555555555555
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555566666666666666666666666666665555666666666666666666
Q ss_pred ccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh
Q 009424 436 RRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE 473 (535)
Q Consensus 436 g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~ 473 (535)
|+.++|.+++++|. +.|..|+..||..++..|..
T Consensus 189 g~~d~A~~ll~~Mr----~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLR----DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHH----HHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHH----HhCCCcCHHHHHHHHHHHhc
Confidence 66666666666665 55555666666555555543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.7e-32 Score=268.50 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC---------hhHHHHHHHHHHHcCCCCCHH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE---------YDEVESMVSEMKEKGIRLDVY 247 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~pd~~ 247 (535)
.+++.+|++|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35666777777777777777777777777777777777777777766543 456777777777777777777
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHH
Q 009424 248 SYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLY 327 (535)
Q Consensus 248 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (535)
||++||++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 777777777777777777777777764 4677777777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI 365 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 365 (535)
++.|++++|.++|++|++.+..|+..||+.++..++..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777666553
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.1e-27 Score=232.46 Aligned_cols=379 Identities=9% Similarity=-0.013 Sum_probs=315.4
Q ss_pred HHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCC
Q 009424 113 VKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARM 191 (535)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~ 191 (535)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++..... +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 345667788888888888877765 445566667777788888888888888766544 4577899999999999999
Q ss_pred HhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHH
Q 009424 192 RGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271 (535)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 271 (535)
+++|...|+++.+.. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998753 3345679999999999999999999999998874 23455677788888999999999999999
Q ss_pred hHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 009424 272 MKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT 351 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 351 (535)
+.+.. +.+..+|..+...|.+.|++++|...|+++.+..+ .+...|..+...+...|++++|+..|++.....+. +
T Consensus 161 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 88642 55678999999999999999999999999987532 24567888889999999999999999999886554 3
Q ss_pred hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 009424 352 NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG 431 (535)
Q Consensus 352 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 431 (535)
..++..+...+...|++++|.+.++++.+..+. ++.+|..+...|.+.|++++|...|+++.+..+ .+..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHH
Confidence 467888999999999999999999999887644 678899999999999999999999999998644 378899999999
Q ss_pred HHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 432 HIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
+.+.|++++|++.++++. ...| +..++..+...+.+.|++++|.+.++++++..+.....|..+...|.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHT------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 999999999999999998 3345 4678889999999999999999999999998877766888888887554
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.5e-26 Score=223.02 Aligned_cols=379 Identities=12% Similarity=0.017 Sum_probs=322.1
Q ss_pred HHHHhccCCCCccHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh
Q 009424 77 FRKLSLMDNPQLGSASVLNDWEKGGRSLT-KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK 155 (535)
Q Consensus 77 i~~~~~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~ 155 (535)
...+.+.|+++ +|+..|.++.+. .|+ ...+..+...+...|++++|...++..++.. +.+...+..+...|.+
T Consensus 6 a~~~~~~g~~~-~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~---p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFE-AAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHH-HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 45667889999 999999998874 454 4556667778889999999999999999875 6678899999999999
Q ss_pred hCCHhhHHHHHhhCCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHH
Q 009424 156 VHGVASAEDFFLSLPDTLK-DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMV 234 (535)
Q Consensus 156 ~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 234 (535)
.|++++|...|+++....| +..+|..+...+.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999866534 56789999999999999999999999998864 234556777888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC
Q 009424 235 SEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITG 314 (535)
Q Consensus 235 ~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 314 (535)
+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+..+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 234 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 9999874 3467889999999999999999999999998642 55678899999999999999999999999876432
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
.+..+|..+...|.+.|++++|+..|+++....+. +..+|..+...+.+.|++++|.+.++++.+..+ .+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHH
Confidence 24678999999999999999999999999986554 336788999999999999999999999988754 3788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHh
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEE 473 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~ 473 (535)
..+.+.|++++|...|+++.+..+ .+..+|..+...|.+.|++++|++.|+++. .+.|+ ...|..+...+..
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAI------RISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHH------TTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCCHHHHHhHHHHHHH
Confidence 999999999999999999987533 268899999999999999999999999999 35665 4455555555544
Q ss_pred cC
Q 009424 474 ES 475 (535)
Q Consensus 474 ~g 475 (535)
.|
T Consensus 386 ~~ 387 (388)
T 1w3b_A 386 MQ 387 (388)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.8e-22 Score=201.38 Aligned_cols=310 Identities=11% Similarity=0.043 Sum_probs=194.0
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHH
Q 009424 109 LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYV 187 (535)
Q Consensus 109 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~ 187 (535)
+..+...+.+.|++++|+.+|+.+++.. +.+...+..+...|...|++++|...|+++.+. +.+..+|..+...|.
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3344444444444444444444444332 223344444444444444444444444443322 123455555555555
Q ss_pred HcCCHhHHHHHHHHHHHCCCCcCc---chHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 009424 188 RARMRGNAELLIDKMRDKGYAVHS---LPYNVM------------MTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIW 252 (535)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~l 252 (535)
+.|++++|...|+++.+.+ +.+. ..|..+ ...+.+.|++++|+..|+++.+.. +.+..++..+
T Consensus 106 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 5555555555555555542 1112 333333 334677788888888888777654 3466777777
Q ss_pred HHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc-hHHHH--------
Q 009424 253 LSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV-PYHYL-------- 323 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l-------- 323 (535)
..+|.+.|++++|..+|+.+.+.. +.+..+|..+...|.+.|++++|...|+++.+. .|+.. .+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 788888888888888888777532 456777888888888888888888888887653 34333 33333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 324 ----LSLYGSVGKKEEVYRVWNLYRSVFPGVT---NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 324 ----i~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
...|.+.|++++|+..|+++....+... ...+..+...+.+.|++++|...++.+.+..+. +..+|..+..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 338 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 6778888888888888888877554422 236777788888888888888888887765433 67788888888
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 009424 397 YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLA 429 (535)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 429 (535)
|...|++++|...|+++.+..+. +...+..+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 88888888888888888774333 455555555
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=5.9e-22 Score=197.73 Aligned_cols=312 Identities=11% Similarity=0.030 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS 255 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~ 255 (535)
...|..+...|.+.|++++|+.+|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3444455555555555555555555544431 2234444455555555555555555555554443 2234444445555
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCC-H---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHhcccCCCcch
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPN-W---TTFSTMA------------TMYIKMGQVEKAEESLRRVESRITGRDRVP 319 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 319 (535)
|.+.|++++|.+.|+.+.+. .|+ . ..+..++ ..|.+.|++++|...|+++.+.. +.+...
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 55555555555555554431 222 2 2333332 22445555555555555554321 123344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHH------
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM------ 393 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 393 (535)
+..+..+|.+.|++++|+..|+++....+. +..++..+...+...|++++|...++.+.+..+. +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 455555555555555555555555443222 2244445555555555555555555555443222 22233222
Q ss_pred ------HHHHHHcCChhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHH
Q 009424 394 ------MSWYVKEGNFDKAEAFFNSIIEEGGKPN----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPV 462 (535)
Q Consensus 394 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~ 462 (535)
...|.+.|++++|...|+++.+.... + ...|..+...+.+.|++++|++.++++.+ +.| +..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------~~p~~~~ 330 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ------MEPDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------HCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcccHH
Confidence 55555566666666666665553211 1 23455555556666666666666666551 223 345
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHH
Q 009424 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLI 502 (535)
Q Consensus 463 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~ 502 (535)
.|..+..+|...|++++|.+.++++++..+.....+..|.
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 5555555666666666666666666655555444444444
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.2e-22 Score=203.10 Aligned_cols=414 Identities=9% Similarity=-0.032 Sum_probs=322.3
Q ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHH
Q 009424 70 MIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQ 149 (535)
Q Consensus 70 ~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~l 149 (535)
+..|-..-..+.+.|+++ +|+..|+++.+.. ||..++..+..++...|++++|.+.++.+++.. +.+...+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~-~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYD-DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHH-HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHHHHHHHHH
Confidence 345667778889999999 9999999999854 899999999999999999999999999999886 5667888999
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-----------------------
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDK----------------------- 205 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------- 205 (535)
..+|.+.|++++|...|+++... +++......++..+.+......+.+.+..+...
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999987654 234444444444444433333333222211110
Q ss_pred ------------CC---------CcCcchHHHHHHHHHh---cCChhHHHHHHHHHHH-----c--CC------CCCHHH
Q 009424 206 ------------GY---------AVHSLPYNVMMTLYMK---IKEYDEVESMVSEMKE-----K--GI------RLDVYS 248 (535)
Q Consensus 206 ------------g~---------~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~--g~------~pd~~~ 248 (535)
.. +.+...+......+.. .|++++|+.+|+++.+ . .. +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 00 0113334444444444 8999999999999988 3 11 235677
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
+..+...+...|++++|...++.+.+. .|+..++..+...|...|++++|...|+++.+... .+...|..+...|.
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 888889999999999999999998864 34488899999999999999999999999876532 35668889999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 408 (535)
..|++++|+..|+++....+. +...+..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999886554 3467888899999999999999999999876544 67788999999999999999999
Q ss_pred HHHHHHHcCCC-CC----HhHHHHHHHHHHc---cccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhh
Q 009424 409 FFNSIIEEGGK-PN----STSWETLAEGHIR---ERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 409 ~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~ 479 (535)
.|+++.+.... ++ ...|..+...|.. .|++++|.+.++++.+ ..| +..++..+...+...|++++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK------LDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHhcCHHH
Confidence 99998764322 12 3488999999999 9999999999999983 234 46678888889999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHH
Q 009424 480 KEAFVALLRQPGYRKEKDYMSL 501 (535)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~L 501 (535)
|.+.+++..+..+.....+..+
T Consensus 468 A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 468 AITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHH
Confidence 9999999999888766655444
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.6e-22 Score=200.34 Aligned_cols=397 Identities=10% Similarity=0.016 Sum_probs=314.2
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHH
Q 009424 107 WELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNA 185 (535)
Q Consensus 107 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~ 185 (535)
..+......+.+.|++++|+..|+.+++.. ++...+..+..+|.+.|++++|...|+++.+. +.+..+|..+...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 445567788899999999999999999976 36888999999999999999999999987665 4567899999999
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-------------------CC---
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKG-------------------IR--- 243 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------------------~~--- 243 (535)
|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+ ..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999876 4455555566655554433333333332211110 00
Q ss_pred ---------------------C-CHHHHHHHHHHHh---cCCCHhHHHHHHHHhHh-----CCCC-------CCCHHHHH
Q 009424 244 ---------------------L-DVYSYNIWLSSCG---SQGSTEKMEGVFELMKV-----DKAV-------NPNWTTFS 286 (535)
Q Consensus 244 ---------------------p-d~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~ 286 (535)
| +...+......+. +.|++++|..+|+.+.+ .... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1 1333333333344 38999999999999886 2111 23456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 287 TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
.+...|...|++++|...|+++.+... +...|..+...|...|++++|+..++++....+. +...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 899999999999999999999987654 4778889999999999999999999999886544 3467889999999999
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 446 (535)
++++|...++.+.+..+. +...+..+...|.+.|++++|...|+++.+.... +...|..+...|...|++++|.+.++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999887655 6778999999999999999999999999886443 67889999999999999999999999
Q ss_pred HhHHhccCCCCCC-CHHHHHHHHHHHHh---cCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 447 GAFAAEGAKSWRP-KPVNVINFFKACEE---ESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 447 ~m~~~~~~~g~~p-~~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
++.+..+...... ....+..+...+.. .|++++|.+.++++.+..+.....+..+..+|...|+.++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 9985433322111 14588888899999 9999999999999999887777789999999988888877
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.6e-20 Score=189.19 Aligned_cols=408 Identities=9% Similarity=-0.021 Sum_probs=314.7
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
....|..+-..+.+.|+++ +|+..|+++.+.. +.+..++..+..++...|++++|++.++.+++.. +.+...+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 98 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFN-EAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHH
Confidence 3557888889999999999 9999999998852 2367888899999999999999999999999986 557888899
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC------CCcCcch---------
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG------YAVHSLP--------- 213 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~--------- 213 (535)
+...|...|++++|...|+.+.. +....+..+..+...+...+|...++++.... ..|+...
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLSL---NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999999975533 22333344556666777788898888885531 1111111
Q ss_pred -----------------HHHHHHHHH------------hcCChhHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHh
Q 009424 214 -----------------YNVMMTLYM------------KIKEYDEVESMVSEMKEKGIRLD-------VYSYNIWLSSCG 257 (535)
Q Consensus 214 -----------------~~~li~~~~------------~~g~~~~a~~~~~~m~~~g~~pd-------~~~~~~ll~~~~ 257 (535)
+..+..++. ..|++++|+.+|+++.+.... + ..++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 111222222 124788999999999876422 2 235666777888
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVY 337 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 337 (535)
..|++++|...++.+.+. .|+..++..+...|...|++++|...|++..+... .+..+|..+...|...|++++|+
T Consensus 255 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999864 56788899999999999999999999999987543 35678999999999999999999
Q ss_pred HHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009424 338 RVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG 417 (535)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 417 (535)
..|+++....+. +...+..+...+...|++++|...++.+.+..+. +..++..+...|...|++++|...|+++.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999987655 3367888999999999999999999999887644 67789999999999999999999999987642
Q ss_pred CC-----CCHhHHHHHHHHHHcc----------ccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHH
Q 009424 418 GK-----PNSTSWETLAEGHIRE----------RRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 418 ~~-----p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
.. .....+......+.+. |++++|++.|+++.+ ..| +...+..+...+...|++++|.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE------LDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 21 1222344555677777 999999999999993 334 4678888889999999999999
Q ss_pred HHHHHHhcCCCCChhh
Q 009424 482 AFVALLRQPGYRKEKD 497 (535)
Q Consensus 482 ~~~~~~~~~~~~~~~~ 497 (535)
+.+++..+..+.....
T Consensus 483 ~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 483 ELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHC--CHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999999988877663
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=3.2e-20 Score=189.53 Aligned_cols=393 Identities=10% Similarity=0.003 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHH
Q 009424 106 KWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLN 184 (535)
Q Consensus 106 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~ 184 (535)
...+......+.+.|++++|++.|+.+++.. +.+...+..+...|.+.|++++|.+.|+++... +.+..+|..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3556777888999999999999999999986 567889999999999999999999999997665 457889999999
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCHHHH---------
Q 009424 185 AYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK------GIRLDVYSY--------- 249 (535)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~pd~~~~--------- 249 (535)
.|.+.|++++|...|+.+... |+ ..+..+..+...+...+|...++.+... ...|+....
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999744222 22 2233345566666678888888887543 122332222
Q ss_pred ---------------------HHHHHHHhcC--------CCHhHHHHHHHHhHhCCCCCCCH-------HHHHHHHHHHH
Q 009424 250 ---------------------NIWLSSCGSQ--------GSTEKMEGVFELMKVDKAVNPNW-------TTFSTMATMYI 293 (535)
Q Consensus 250 ---------------------~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~ 293 (535)
..+...+... |++++|..+++.+.+.. +.+. .++..+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHH
Confidence 2222222222 47899999999998632 3332 35667778889
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEK 373 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 373 (535)
..|++++|...|++..+. .|+...|..+...|...|++++|+..|+++....+. +..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999874 466778889999999999999999999999887654 34678899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhcc
Q 009424 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEG 453 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (535)
.++.+.+..+. +...+..+...|...|++++|...|+++.+.... +...|..+...|...|++++|.+.|+++.+..+
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99999887654 6788999999999999999999999999987544 677899999999999999999999999984332
Q ss_pred CCC-CCCCHHHHHHHHHHHHhc----------CChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 454 AKS-WRPKPVNVINFFKACEEE----------SDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 454 ~~g-~~p~~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
... .......+......+... |++++|...++++.+..+.....+..+...|...|+..+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 221 111222344445567777 999999999999999988777799999999988887777
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.3e-18 Score=167.53 Aligned_cols=318 Identities=11% Similarity=0.019 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSS 255 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~ 255 (535)
+..|..+...+.+.|++++|...|++..+.. +.+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445555555666666666666666655542 2234555556666666666666666666665543 2244555556666
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcccCCCcch
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNP----NWTTFSTM------------ATMYIKMGQVEKAEESLRRVESRITGRDRVP 319 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 319 (535)
+...|++++|...++.+.+. .| +...+..+ ...+...|++++|...|+++.+..+ .+...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 156 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAEL 156 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHH
Confidence 66666666666666666532 23 23333333 4566777777777777777765432 34556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH--------
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN-------- 391 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------- 391 (535)
+..+...+...|++++|+..++++....+. +...+..+...+...|++++|...++.+.+..+. +...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 666777777777777777777777665333 3356667777777777777777777777665433 333322
Q ss_pred ----HHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHH
Q 009424 392 ----LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS----TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPV 462 (535)
Q Consensus 392 ----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~ 462 (535)
.+...+.+.|++++|...+++..+.... +. ..|..+...+...|++++|++.++++.+ ..| +..
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~ 307 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ------MEPDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCcccHH
Confidence 2356688889999999999888875433 22 2344567788888999999999998883 244 566
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhh
Q 009424 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 508 (535)
Q Consensus 463 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~ 508 (535)
++..+...+...|++++|.+.+++..+..+.....+..|..++...
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 7888888888899999999999999888877766777777776443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3e-18 Score=165.01 Aligned_cols=298 Identities=11% Similarity=0.022 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHH
Q 009424 108 ELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAY 186 (535)
Q Consensus 108 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~ 186 (535)
.+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|...|+++... +.+...|..+...|
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34445555566666666666666666553 334445555555555555555555555554433 22455666666666
Q ss_pred HHcCCHhHHHHHHHHHHHCCCC---cCcchHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 009424 187 VRARMRGNAELLIDKMRDKGYA---VHSLPYNVM------------MTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNI 251 (535)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ 251 (535)
.+.|++++|...|++..+.. + .+...+..+ ...+...|++++|++.|+++.+.. +.+...+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 66666666666666665542 1 122333332 355666666666666666666553 235555666
Q ss_pred HHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-chHH---------
Q 009424 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR-VPYH--------- 321 (535)
Q Consensus 252 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~--------- 321 (535)
+..++...|++++|...++.+.+. .+.+..++..+...|...|++++|...|++..+.. |+. ..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHH
Confidence 666666666666666666666642 24455666666666666666666666666665432 222 1221
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 009424 322 ---YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMS 395 (535)
Q Consensus 322 ---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 395 (535)
.+...+.+.|++++|+..++++....+.... ..+..+...+...|++++|...++.+.+..+. +..++..+..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 314 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 1133345555555555555555544333111 11223444455555555555555555443222 4445555555
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 009424 396 WYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~ 415 (535)
.|.+.|++++|...|++..+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555554
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.6e-18 Score=167.92 Aligned_cols=293 Identities=12% Similarity=-0.076 Sum_probs=208.8
Q ss_pred HcCCHhHHHH-HHHHHHHCC---CCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHh
Q 009424 188 RARMRGNAEL-LIDKMRDKG---YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE 263 (535)
Q Consensus 188 ~~g~~~~A~~-~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 263 (535)
..|++++|.. .|++..... ...+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666766 666443321 11134567777777777777777777777777764 346667777777777788888
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHH---------------HHHHHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHY---------------LLSLYG 328 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~ 328 (535)
+|...|+.+.+.. +.+..++..+...|...|++++|...|+++.+..+.. ...+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 8888877777532 4567777777788888888888888888776643221 112211 233344
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC-chhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGV-TNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
..|++++|+..|+++....+.. +..++..+...+...|++++|...++++.+..+. +..++..+...|.+.|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999998876553 3567888899999999999999999998876543 6788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCC-----C-CCCHHHHHHHHHHHHhcCChhhHH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKS-----W-RPKPVNVINFFKACEEESDMGSKE 481 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g-----~-~p~~~~~~~ll~a~~~~g~~~~a~ 481 (535)
..|+++.+.... +...|..+...|.+.|++++|.+.|+++.+..+... . .....+|..+..++...|++++|.
T Consensus 272 ~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999999886433 678899999999999999999999999984332221 0 012578888999999999999999
Q ss_pred HHHHH
Q 009424 482 AFVAL 486 (535)
Q Consensus 482 ~~~~~ 486 (535)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88763
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.1e-17 Score=159.04 Aligned_cols=284 Identities=11% Similarity=0.028 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444444555555555555555555554432 2233444444455555555555555555554432 123344444444
Q ss_pred HHhcCC-CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCH
Q 009424 255 SCGSQG-STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333 (535)
Q Consensus 255 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (535)
.+...| ++++|...|+...+.. +.+...|..+...|...|++++|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------------------------- 150 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFT-------------------------- 150 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHH--------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHH--------------------------
Confidence 455555 4555555555544321 22334444444445555555555555544
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
+....+.. ...+..+...+...|++++|...++++.+..+. +..++..+...|...|++++|...|++.
T Consensus 151 ---------a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 151 ---------AAQLMKGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp ---------HHHHTTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------HHHhcccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44433221 123333444455555555555555554443322 3445555555555555555555555555
Q ss_pred HHcC--------CCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHH
Q 009424 414 IEEG--------GKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFV 484 (535)
Q Consensus 414 ~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 484 (535)
.+.. ...+..+|..+...|...|++++|++.++++.+ ..| +...+..+...+...|++++|.+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV------LIPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------hCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 4321 011234555555555555555555555555552 112 3344555555555555555555555
Q ss_pred HHHhcCCCCChhhHHHHHHHh
Q 009424 485 ALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 485 ~~~~~~~~~~~~~~~~L~~~y 505 (535)
++..+..+.....+..|...|
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHccCCCchHHHHHHHHHH
Confidence 555555544444444444444
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.7e-17 Score=157.77 Aligned_cols=278 Identities=8% Similarity=-0.013 Sum_probs=201.9
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHH
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVM 217 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 217 (535)
.+.+..+...+...+...|++++|.++|+++... +.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4556777888889999999999999999998655 3456677788899999999999999999998864 4467889999
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC
Q 009424 218 MTLYMKIK-EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296 (535)
Q Consensus 218 i~~~~~~g-~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 296 (535)
...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence 99999999 9999999999999875 3467789999999999999999999999998642 445677777888999999
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHH
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFE 376 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 376 (535)
++++|...|++..+... .+...|..+...|...|++++|+..|++.....+....
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------------ 228 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------------------------ 228 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------------------------
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------------------------
Confidence 99999999998876432 34567777777778888888888877776653211000
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 377 EWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
......+..++..+...|.+.|++++|...|++..+.... +...|..+...|.+.|++++|.+.|+++.
T Consensus 229 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 229 ---EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp ---SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 0001112344555555555555555555555555543322 44555555555556666666666666555
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.7e-16 Score=160.07 Aligned_cols=419 Identities=10% Similarity=0.020 Sum_probs=302.8
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
|+..|..++. +.+.|+.+ .|..+|+++.+. .| +...|...+..+.+.|+++.|.++|+.+++.. |+...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~-~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~----p~~~lw~ 83 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPID-KARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV----LHIDLWK 83 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHH-HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----CCHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHH-HHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CChHHHH
Confidence 5668999998 57789999 999999999884 45 56678899999999999999999999999875 2555565
Q ss_pred HHHHHH-HhhCCHhhHHH----HHhhCCC----CCCCHHHHHHHHHHHHH---------cCCHhHHHHHHHHHHHCCCCc
Q 009424 148 IQLDLI-AKVHGVASAED----FFLSLPD----TLKDRRVYGALLNAYVR---------ARMRGNAELLIDKMRDKGYAV 209 (535)
Q Consensus 148 ~li~~~-~~~g~~~~A~~----~f~~~~~----~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p 209 (535)
..+... ...|+.+.|++ +|++... ...+...|...+....+ .|+++.|+.+|++..+. |
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P 160 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---P 160 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---h
Confidence 555433 35677777665 6665421 13467889888887665 78999999999999883 3
Q ss_pred Cc---chHHHHHHHH-------------HhcCChhHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHH
Q 009424 210 HS---LPYNVMMTLY-------------MKIKEYDEVESMVSEMK------EKG---IRLD--------VYSYNIWLSSC 256 (535)
Q Consensus 210 ~~---~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~pd--------~~~~~~ll~~~ 256 (535)
+. ..|....... .+.+++.+|..++.+.. +.. ++|+ ...|...+...
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e 240 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 32 3343322211 12345677777776632 111 2444 24555555433
Q ss_pred hcC----CCH----hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcccC
Q 009424 257 GSQ----GST----EKMEGVFELMKVDKAVNPNWTTFSTMATMYIK-------MGQVE-------KAEESLRRVESRITG 314 (535)
Q Consensus 257 ~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~ 314 (535)
... ++. +.+..+|++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+
T Consensus 241 ~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 241 KSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 221 233 3677889988864 35678899999888876 79987 899999998752223
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
.+...|..++..+.+.|++++|..+|+++....+.-....|...+..+.+.|+++.|.++|+...+.... +...|....
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a 397 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAA 397 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHH
Confidence 3577899999999999999999999999998543322357888888888999999999999999876432 333333322
Q ss_pred HH-HHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC--HHHHHHHHHHH
Q 009424 395 SW-YVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK--PVNVINFFKAC 471 (535)
Q Consensus 395 ~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~--~~~~~~ll~a~ 471 (535)
.. +...|+.++|..+|++..+..+. +...|..++..+.+.|+.++|..+|+++.. .....|+ ...|...+...
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~---~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT---SGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---SCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHH
Confidence 22 34689999999999998875433 688999999999999999999999999993 1122332 34788888888
Q ss_pred HhcCChhhHHHHHHHHhcCCCCChh--hHHHHHHHh
Q 009424 472 EEESDMGSKEAFVALLRQPGYRKEK--DYMSLIGLT 505 (535)
Q Consensus 472 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~L~~~y 505 (535)
...|+.+.+..+.+++.+.-+.... ....+++-|
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~r~ 509 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFREEYEGKETALLVDRY 509 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHHHHTTCHHHHHGGGT
T ss_pred HHcCCHHHHHHHHHHHHHHCchhccCchHHHHHHHH
Confidence 8999999999999999887653211 334555555
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.9e-19 Score=171.28 Aligned_cols=283 Identities=10% Similarity=0.053 Sum_probs=135.6
Q ss_pred HhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHH
Q 009424 154 AKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESM 233 (535)
Q Consensus 154 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 233 (535)
-+.|++++|.++++++.. | .+|..|..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..
T Consensus 14 ~~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 467889999999999965 4 49999999999999999999999653 4777999999999999999999997
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009424 234 VSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRIT 313 (535)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 313 (535)
++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 7766664 4567889999999999999999887773 367779999999999999999999999966
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHH
Q 009424 314 GRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM 393 (535)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 393 (535)
..|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 47999999999999999999999988 2567899999999999999999555443 22345556678
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc--ccHHHHHHHHHHhHHhccCCCCCC------CHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE--RRILEALSCLKGAFAAEGAKSWRP------KPVNVI 465 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~g~~p------~~~~~~ 465 (535)
+..|.+.|++++|..+++...... .-....|+-+..+|++- ++..+.+++|..-. ++.| +...|.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i------ni~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV------NIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS------CHHHHHHHHHTTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 999999999999999999888654 34678888888888764 56667777766443 4555 456788
Q ss_pred HHHHHHHhcCChhhHHHH
Q 009424 466 NFFKACEEESDMGSKEAF 483 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~ 483 (535)
.+.-.|.+.++++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 888888888999877753
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=6.5e-18 Score=163.52 Aligned_cols=291 Identities=11% Similarity=-0.043 Sum_probs=226.2
Q ss_pred HHhhCCHhhHHH-HHhhCCCCCC-----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC
Q 009424 153 IAKVHGVASAED-FFLSLPDTLK-----DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE 226 (535)
Q Consensus 153 ~~~~g~~~~A~~-~f~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 226 (535)
+...|++++|.. .|++.....| +...|..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888888 8886655422 34567888889999999999999999998874 4467788889999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHH---------------HHHH
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFST---------------MATM 291 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------li~~ 291 (535)
+++|++.|+++.+.+ +.+..++..+..++...|++++|...++.+.+.. +.+...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999998875 4477888889999999999999999999988632 222222221 2333
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhh
Q 009424 292 YIKMGQVEKAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEG 370 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 370 (535)
+...|++++|...|+++.+..+.. +..+|..+...|...|++++|+..|+++....+. +...+..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 448999999999999998754322 4678889999999999999999999999886544 34678899999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC----------CHhHHHHHHHHHHccccHHH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP----------NSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~ 440 (535)
|...++++.+..+. +..++..+..+|.+.|++++|...|++..+..... ...+|..+..+|...|++++
T Consensus 270 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999887543 68899999999999999999999999988643221 16889999999999999999
Q ss_pred HHHHHHHhH
Q 009424 441 ALSCLKGAF 449 (535)
Q Consensus 441 A~~~~~~m~ 449 (535)
|..++++..
T Consensus 349 A~~~~~~~l 357 (368)
T 1fch_A 349 YGAADARDL 357 (368)
T ss_dssp HHHHHTTCH
T ss_pred HHHhHHHHH
Confidence 998887554
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.7e-15 Score=152.54 Aligned_cols=379 Identities=10% Similarity=0.042 Sum_probs=296.9
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----ccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh----hCCHh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRK----FRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK----VHGVA 160 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~----~g~~~ 160 (535)
.++..+......| +...+..+-..+.. .++++.|.+.|....+.| +......+...|.. .++.+
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4455555554433 66666667777777 789999999999988876 35566777778887 88999
Q ss_pred hHHHHHhhCCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh----cCChhHHHH
Q 009424 161 SAEDFFLSLPDTLKDRRVYGALLNAYVR----ARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK----IKEYDEVES 232 (535)
Q Consensus 161 ~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~ 232 (535)
+|.+.|++..+. .+...+..|-..|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++
T Consensus 97 ~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 97 QAVIWYKKAALK-GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999887653 467788888888888 789999999999998887 67778888888887 788999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 009424 233 MVSEMKEKGIRLDVYSYNIWLSSCGS----QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEES 304 (535)
Q Consensus 233 ~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 304 (535)
.|++..+.| +...+..+...|.. .++.++|.+.|+...+. .+...+..+...|.. .++.++|...
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999988875 67778888888877 88999999999998863 367788888888886 7899999999
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc-----CCHhhHHHHH
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGS----VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI-----GDIEGMEKIF 375 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~ 375 (535)
|++..+.| +...+..+-..|.. .++.++|+..|++..+.+ +...+..+...+... ++.++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99887653 45566667777777 789999999999987653 234566777777776 8999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHHHHHHHHHHh
Q 009424 376 EEWLSVKSSYDPRIANLMMSWYVKEG---NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRILEALSCLKGA 448 (535)
Q Consensus 376 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 448 (535)
+...+.+ +...+..+...|.+.| +.++|.+.|++..+. .+...+..+...|.. .+++++|+++|+++
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9988875 5677788888888766 788999999998875 367888888888888 78999999999999
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHhcCCCC---ChhhHHHHHHHh
Q 009424 449 FAAEGAKSWRPKPVNVINFFKACEE----ESDMGSKEAFVALLRQPGYR---KEKDYMSLIGLT 505 (535)
Q Consensus 449 ~~~~~~~g~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~---~~~~~~~L~~~y 505 (535)
. +.+ +...+..+-..+.. .++.++|...+++..+.++. +......|..++
T Consensus 394 ~----~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 394 A----EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp H----HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred H----hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 8 444 46677777777777 78999999999999988865 222444444444
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.3e-17 Score=161.36 Aligned_cols=272 Identities=10% Similarity=-0.087 Sum_probs=202.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 44557777777778888888888888777764 3466777778888888888888888888877532 45577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccCC---------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-chhhHHHHH
Q 009424 290 TMYIKMGQVEKAEESLRRVESRITGR---------DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-TNLGYHAMI 359 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll 359 (535)
..|.+.|++++|...|+++.+..+.. ....+..+...+...|++++|+..|+++....+.. +..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 88888888888888888876642210 12223345778888999999999999998876552 456788899
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 439 (535)
..+...|++++|...++++.+..+. +..+|..+..+|.+.|++++|...|++..+..+. +..+|..+...|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999887644 7889999999999999999999999999886443 5888999999999999999
Q ss_pred HHHHHHHHhHHhccCCCC-------CCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 009424 440 EALSCLKGAFAAEGAKSW-------RPKPVNVINFFKACEEESDMGSKEAFVAL 486 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~-------~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 486 (535)
+|.+.|+++.+..+..+- ..+...|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999854333211 01356788888899999999888877654
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=186.36 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHH---CCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRD---KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIW 252 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~l 252 (535)
..+||+||++|++.|++++|.++|++|.+ .|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 578899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCH-hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC------cchHHHHHH
Q 009424 253 LSSCGSQGST-EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD------RVPYHYLLS 325 (535)
Q Consensus 253 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~ 325 (535)
|+++++.|+. +.|.++|++|.+ .|+.||..+|++++.++.+.+-++.+.++. .+..|+ ..+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~-----P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVK-----PTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGC-----CCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhC-----cccCCCCCCcccccchHHHHH
Confidence 9999998874 788899999986 588999999998887766654333333332 233333 445556667
Q ss_pred HHHhcC
Q 009424 326 LYGSVG 331 (535)
Q Consensus 326 ~~~~~g 331 (535)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.6e-20 Score=190.82 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=127.5
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcch
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-----LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLP 213 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 213 (535)
......+++++|++|+++|++++|.++|++|.+. .||+++||+||++|++.|++++|.++|++|.+.|+.||++|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 4455678999999999999999999999776422 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC------HHHHH
Q 009424 214 YNVMMTLYMKIKEY-DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN------WTTFS 286 (535)
Q Consensus 214 ~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ 286 (535)
||++|.++++.|+. ++|.++|++|.+.|+.||..+|+++++++.+.+ .++..+++. .++.|+ ..+..
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~--P~f~p~~~~~~~~~t~~ 276 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVK--PTFSLPPQLPPPVNTSK 276 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGC--CCCCCCCCCCCCCCCCT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhC--cccCCCCCCcccccchH
Confidence 99999999999985 789999999999999999999999987665543 344444443 234443 55667
Q ss_pred HHHHHHHhcC
Q 009424 287 TMATMYIKMG 296 (535)
Q Consensus 287 ~li~~~~~~g 296 (535)
.|.+.|.+.+
T Consensus 277 LL~dl~s~d~ 286 (1134)
T 3spa_A 277 LLRDVYAKDG 286 (1134)
T ss_dssp TTHHHHCCCS
T ss_pred HHHHHHccCC
Confidence 7888888766
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=4.3e-15 Score=149.64 Aligned_cols=349 Identities=12% Similarity=0.022 Sum_probs=293.9
Q ss_pred cccchHHHHHHHhc----cCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----ccChHHHHHHHHHHHhcCCCcc
Q 009424 69 PMIKWNAIFRKLSL----MDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRK----FRRYKHALEVYDWMNNRGERFR 140 (535)
Q Consensus 69 ~~~~~n~li~~~~~----~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 140 (535)
|+.++..+-..|.. .++++ .|+..|++..+.| +...+..+-..+.. .+++++|.+.|....+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~-~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLT-QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 45566666667776 78888 9999999998764 56677778888888 899999999999999876
Q ss_pred cCHhHHHHHHHHHHh----hCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCcCcc
Q 009424 141 LSASDAAIQLDLIAK----VHGVASAEDFFLSLPDTLKDRRVYGALLNAYVR----ARMRGNAELLIDKMRDKGYAVHSL 212 (535)
Q Consensus 141 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 212 (535)
++.....+..+|.. .+++++|.+.|++..+. .+...+..|-..|.. .++.++|.+.|++..+.| +..
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 35566677778887 78999999999987653 467888888888988 789999999999999887 788
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCCHHH
Q 009424 213 PYNVMMTLYMK----IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS----QGSTEKMEGVFELMKVDKAVNPNWTT 284 (535)
Q Consensus 213 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 284 (535)
++..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|..+|+...+. .+...
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a 257 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIA 257 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 89999999988 899999999999999876 56777778888875 88999999999999853 45677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCCchhhH
Q 009424 285 FSTMATMYIK----MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV-----GKKEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 285 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
+..+..+|.. .++.++|...|++..+.| +...+..+...|... ++.++|+..|++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 8888888888 899999999999987653 455777788888877 89999999999998754 23456
Q ss_pred HHHHHHHHhcC---CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 356 HAMISSLARIG---DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 356 ~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
..+...|...| +.++|.+.+++..+.+ ++..+..+...|.. .+++++|...|++..+.| +...+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 67777777766 7899999999998875 78889999999999 899999999999998864 67788888
Q ss_pred HHHHHc----cccHHHHHHHHHHhH
Q 009424 429 AEGHIR----ERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~----~g~~~~A~~~~~~m~ 449 (535)
...|.+ .++.++|.++|+++.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888887 899999999999999
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.3e-15 Score=153.24 Aligned_cols=392 Identities=9% Similarity=0.033 Sum_probs=284.3
Q ss_pred CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHH
Q 009424 105 TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLN 184 (535)
Q Consensus 105 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~ 184 (535)
|...|..++. +.+.|+++.|..+|+.+++. ++.+...+...+..+.+.|++++|+.+|++.....|++..|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 6667888887 47789999999999999987 4778889999999999999999999999999888788888988885
Q ss_pred HH-HHcCCHhHHHH----HHHHHHH-CCCCc-CcchHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCCHHH
Q 009424 185 AY-VRARMRGNAEL----LIDKMRD-KGYAV-HSLPYNVMMTLYMK---------IKEYDEVESMVSEMKEKGIRLDVYS 248 (535)
Q Consensus 185 ~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~pd~~~ 248 (535)
.. ...|+.++|.+ +|++... .|..| +...|...+....+ .|++++|..+|++.++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45688877766 7776654 35444 45678887776655 7889999999999988321111233
Q ss_pred HHHHHHHH-------------hcCCCHhHHHHHHHHh------HhCC--CCCCC--------HHHHHHHHHHHHhc----
Q 009424 249 YNIWLSSC-------------GSQGSTEKMEGVFELM------KVDK--AVNPN--------WTTFSTMATMYIKM---- 295 (535)
Q Consensus 249 ~~~ll~~~-------------~~~g~~~~a~~~~~~~------~~~~--~~~~~--------~~~~~~li~~~~~~---- 295 (535)
|....... ...++++.|..++..+ .+.. .++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43322211 1345677777777652 2111 13444 35666666543332
Q ss_pred CCH----HHHHHHHHHHHhcccCCCcchHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-hCCCCchhhHH
Q 009424 296 GQV----EKAEESLRRVESRITGRDRVPYHYLLSLYGS-------VGKKE-------EVYRVWNLYRS-VFPGVTNLGYH 356 (535)
Q Consensus 296 g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~-~~~~~~~~~~~ 356 (535)
++. +.+..+|++..... +.+...|......+.+ .|+++ +|+.+|++... ..+. +...|.
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~ 325 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYF 325 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 232 47788899887653 3467788888888875 68876 99999999986 3222 346788
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDP-RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG-HIR 434 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~ 434 (535)
.++..+.+.|++++|..+|+.+++..+. +. .+|..++..+.+.|++++|.++|++..+.... +...|...... +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHH
Confidence 8999999999999999999999886433 33 58999999999999999999999999875322 23333322222 336
Q ss_pred cccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh----hHHHHHHHhHhhh
Q 009424 435 ERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK----DYMSLIGLTDEAV 509 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~L~~~y~~~~ 509 (535)
.|+.++|.++|+++.+ ..| +...|..++....+.|+.++|+.+|++.++.++.++. .|...++.....|
T Consensus 404 ~~~~~~A~~~~e~al~------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLK------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp TCCHHHHHHHHHHHHH------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred cCChhHHHHHHHHHHH------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999983 345 4678889999999999999999999999988665432 5656566554444
Q ss_pred h
Q 009424 510 A 510 (535)
Q Consensus 510 ~ 510 (535)
.
T Consensus 478 ~ 478 (530)
T 2ooe_A 478 D 478 (530)
T ss_dssp C
T ss_pred C
Confidence 3
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.3e-17 Score=161.26 Aligned_cols=283 Identities=11% Similarity=-0.003 Sum_probs=219.1
Q ss_pred hhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 009424 160 ASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMK 238 (535)
Q Consensus 160 ~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 238 (535)
..+...+...+.. ..+...|..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|++.|+++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444433332 2345668888899999999999999999998764 4467889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 239 EKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN-----------WTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 239 ~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
+.. +.+..++..+..+|...|++++|...++++.+. .|+ ..++..+...|.+.|++++|...|++
T Consensus 127 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 127 ELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred hcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 874 346788999999999999999999999998753 222 22344567889999999999999999
Q ss_pred HHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC
Q 009424 308 VESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD 386 (535)
Q Consensus 308 m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 386 (535)
+.+..+.. +..+|..+...|...|++++|+..|+++....+. +..++..+..+|...|++++|...++++.+..+. +
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~ 280 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-F 280 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 98754321 5778999999999999999999999999887554 4568899999999999999999999999887644 6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----------CCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-----------PNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..++..+..+|.+.|++++|...|++..+.... .+...|..+..++...|+.+.+.++..+-.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 889999999999999999999999998864211 136789999999999999998888776543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.2e-17 Score=155.29 Aligned_cols=267 Identities=9% Similarity=0.050 Sum_probs=128.8
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAA 147 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 147 (535)
++..+|..|..++.+.|+++ +|++.|.+ .+|..+|..++.+|...|++++|+..+....+.. .++.+.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~-eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~----~~~~i~~ 98 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVK-EAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHH-HHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----ccchhHH
Confidence 34459999999999999999 99999975 3688899999999999999999999888777642 3477888
Q ss_pred HHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCCh
Q 009424 148 IQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 148 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 227 (535)
.++.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp ----------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence 999999999999999988863 67789999999999999999999999976 4799999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
++|.+.+..+ .+..+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|..+++.
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988 278999999999999999999966655433 2333455799999999999999999998
Q ss_pred HHhcccCCCcchHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCC------chhhHHHHHHHHHhcCCHhhHHHH
Q 009424 308 VESRITGRDRVPYHYLLSLYGSV--GKKEEVYRVWNLYRSVFPGV------TNLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 308 m~~~g~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
..... +.....|+-+--+|++- ++..+.+++|..- ..+.+ +...|.-+.-.|.+.++++.|...
T Consensus 233 aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 233 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 86432 33455777777777765 2344444444311 11111 124677777777777888777654
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=3.3e-16 Score=148.64 Aligned_cols=270 Identities=7% Similarity=-0.098 Sum_probs=187.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHH
Q 009424 211 SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMAT 290 (535)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 290 (535)
...|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHH
Confidence 3445555556666666666666666665543 2245555566666666666666666666665431 345556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccCCCcchHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhhCCCCchhhH
Q 009424 291 MYIKMGQVEKAEESLRRVESRITGRDRVPYHYL--------------LS-LYGSVGKKEEVYRVWNLYRSVFPGVTNLGY 355 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 355 (535)
.|...|++++|...|+++.+.... +...+..+ .. .+...|++++|+..++++....+. +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 666666776776666666553221 22222222 22 366778889999999998886554 45678
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE 435 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 435 (535)
..+...+...|++++|...++++.+..+. +..++..+...|...|++++|...|+++.+.... +...|..+...|.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 88888999999999999999988876543 6788899999999999999999999998876443 678899999999999
Q ss_pred ccHHHHHHHHHHhHHhccCCCCCC-------CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 009424 436 RRILEALSCLKGAFAAEGAKSWRP-------KPVNVINFFKACEEESDMGSKEAFVALL 487 (535)
Q Consensus 436 g~~~~A~~~~~~m~~~~~~~g~~p-------~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 487 (535)
|++++|.+.++++.+..+...... +...|..+..++...|++++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999984322211000 3567888888999999999999887644
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=2.6e-16 Score=149.31 Aligned_cols=265 Identities=8% Similarity=-0.046 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
.|..+...+.+.|++++|..+|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44555556666666666666666665543 2345566666666666666666666666666653 235556666666666
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcccCCCcchHHH
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTM--------------AT-MYIKMGQVEKAEESLRRVESRITGRDRVPYHY 322 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 322 (535)
..|++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|...++++.+... .+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 6677777766666666431 1122222222 22 36677888888888888876532 35667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN 402 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 402 (535)
+...|...|++++|+..++++....+. +...+..+...+...|++++|...++++.+..+. +..++..+...|.+.|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc
Confidence 888888888888888888888776443 3467788888888999999999999988776543 67788889999999999
Q ss_pred hhHHHHHHHHHHHcCCCC-----------CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 403 FDKAEAFFNSIIEEGGKP-----------NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+++|.+.|++..+..... +...|..+...+.+.|++++|.+++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999888753332 46788889999999999999999887665
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=9.5e-16 Score=142.67 Aligned_cols=249 Identities=11% Similarity=0.094 Sum_probs=122.8
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhH
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDR--RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 229 (535)
-....|++..|...++......|+. ...-.+...|...|++++|+..++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3444566666666665554432222 2334445566666666666654433 123445555555555666666666
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 230 VESMVSEMKEKGIRL-DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 230 a~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (535)
|++.++++...+..| +...+..+..++...|++++|.+.++. +.+...+..++..|.+.|+.++|.+.|+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666665554333 333344444555566666666655543 234555555555566666666666666555
Q ss_pred HhcccCCCcchHH---HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC
Q 009424 309 ESRITGRDRVPYH---YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY 385 (535)
Q Consensus 309 ~~~g~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 385 (535)
.+. .|+....+ ..+..+...|++++|+.+|+++....+. +...++.+..++.+.|++++|...++++++..+.
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 543 23322111 1112222334555555555555544222 2344444555555555555555555555444332
Q ss_pred CHHHHHHHHHHHHHcCChhH-HHHHHHHHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDK-AEAFFNSIIE 415 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 415 (535)
++.++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444445555555555443 3444444444
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=5.5e-14 Score=149.03 Aligned_cols=344 Identities=9% Similarity=0.050 Sum_probs=230.3
Q ss_pred CCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHH
Q 009424 104 LTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALL 183 (535)
Q Consensus 104 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li 183 (535)
-|+.-.+..+++|...|...+|+++++.++..+..+.-+....+.++....+. +..+..+..++... -+ ...+.
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA 1056 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIA 1056 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHH
Confidence 35555568899999999999999999999966544556677777777766666 45555555555543 22 33466
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHh
Q 009424 184 NAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTE 263 (535)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 263 (535)
..+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++.+.|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 667778888888888887521 1222233322 667777777777644 24567777788888888888
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
+|...|.+. .|...|..++..|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 888877443 356677777888888888888888887665533 34333445777777777777533332
Q ss_pred HhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh
Q 009424 344 RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNST 423 (535)
Q Consensus 344 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 423 (535)
..++...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++.. +..
T Consensus 1191 ----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 ----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred ----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 1223345556777778888888888888763 367778888888888888888777652 667
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIG 503 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~ 503 (535)
+|..+-.+|...|++..|........ .++..+..++..|.+.|.+++|..+++..+.........|.-|..
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii---------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV---------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh---------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 77777777777777777776555332 345556677777777777888877777766555333335666666
Q ss_pred HhHh
Q 009424 504 LTDE 507 (535)
Q Consensus 504 ~y~~ 507 (535)
+|++
T Consensus 1323 LyaK 1326 (1630)
T 1xi4_A 1323 LYSK 1326 (1630)
T ss_pred HHHh
Confidence 6644
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.7e-15 Score=141.00 Aligned_cols=275 Identities=9% Similarity=0.027 Sum_probs=207.3
Q ss_pred HHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCH
Q 009424 113 VKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMR 192 (535)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 192 (535)
++-....|.+..|+...+.+.... ..........+...|...|+++.|...++... .|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~--~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSS--APELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTS--CHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccC--ChhHHHHHHHHHHHcCCCcH
Confidence 445566788888888877654433 22222344566788999999999998887643 36778888899999999999
Q ss_pred hHHHHHHHHHHHCCCCcC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHH
Q 009424 193 GNAELLIDKMRDKGYAVH-SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFEL 271 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 271 (535)
++|++.++++...+..|+ ...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988775554 45566666889999999999999987 45788888999999999999999999999
Q ss_pred hHhCCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 009424 272 MKVDKAVNPNWTT---FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP 348 (535)
Q Consensus 272 ~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 348 (535)
+.+. .|+... ..+++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|++.....+
T Consensus 156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9864 354321 123344455568999999999999876 335777899999999999999999999999988755
Q ss_pred CCchhhHHHHHHHHHhcCCHhh-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 349 GVTNLGYHAMISSLARIGDIEG-MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 349 ~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
. +..++..++..+...|+.++ +.++++++.+..+. ++.+ .+...+.+.++++.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~----~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFI----KEYRAKENDFDRLV 285 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHH----HHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHH----HHHHHHHHHHHHHH
Confidence 4 44678888888889999865 67888888876654 3432 33344444444443
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.1e-13 Score=146.71 Aligned_cols=374 Identities=11% Similarity=0.057 Sum_probs=282.5
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHH
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKGGR--SLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLD 151 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~ 151 (535)
...+++|...|.+. +|+++|+...-.+- .-+...-+.++....+. +...+.+......+. ...-+..
T Consensus 989 s~~vKaf~~aglp~-EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~---------d~~eIA~ 1057 (1630)
T 1xi4_A 989 SVTVKAFMTADLPN-ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY---------DAPDIAN 1057 (1630)
T ss_pred HHHHHHHHhCCCHH-HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---------cHHHHHH
Confidence 45678899999999 99999999884321 12233444455555555 556666665554321 1333667
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVE 231 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 231 (535)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1058 Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 78889999999999999753 3344454543 7789999999998662 4688999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009424 232 SMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR 311 (535)
Q Consensus 232 ~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 311 (535)
+.|.+. -|...|..++.+|.+.|++++|.+.+...++. .++....+.++.+|++.+++++...+.+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI~----- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHHh-----
Confidence 999553 37788899999999999999999999988753 3454455569999999999986444431
Q ss_pred ccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH
Q 009424 312 ITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391 (535)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 391 (535)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 356677888999999999999999999985 36999999999999999999999976 2778999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH-HHHHHHHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV-NVINFFKA 470 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~-~~~~ll~a 470 (535)
.+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++... ++.|... .|+-+..+
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL------~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL------GLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh------ccChhHhHHHHHHHHH
Confidence 99999999999999998876533 377788899999999999999999999988 5555443 55444444
Q ss_pred HHh--cCChhhHHHHHHHHhcCCCCC-------hhhHHHHHHHhHhhhhcccc
Q 009424 471 CEE--ESDMGSKEAFVALLRQPGYRK-------EKDYMSLIGLTDEAVAENNK 514 (535)
Q Consensus 471 ~~~--~g~~~~a~~~~~~~~~~~~~~-------~~~~~~L~~~y~~~~~~~~~ 514 (535)
+.+ -++..++.+.|.. +.++++ ...|.-++-.|.+.|.++.+
T Consensus 1324 yaKy~peklmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHhCCHHHHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 443 3445555555543 223322 22688899999887777763
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=4.8e-14 Score=141.26 Aligned_cols=389 Identities=11% Similarity=-0.098 Sum_probs=203.0
Q ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHccChHHHHHHHHHHHhcC----C
Q 009424 70 MIKWNAIFRKLSLMDNPQLGSASVLNDWEKG-----G--RSL-TKWELCRVVKELRKFRRYKHALEVYDWMNNRG----E 137 (535)
Q Consensus 70 ~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~ 137 (535)
+..||.|-..+...|+.+ +|++.|++..+. + ..| ...+|..+...+...|++++|...++.+.+.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~-eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNE-AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 557888888888999999 999999876442 1 123 35678888888999999999999888876532 0
Q ss_pred Cc-ccCHhHHHHHHHHHHhh--CCHhhHHHHHhhCCCCCC-CHHHHHHHHHH---HHHcCCHhHHHHHHHHHHHCCCCcC
Q 009424 138 RF-RLSASDAAIQLDLIAKV--HGVASAEDFFLSLPDTLK-DRRVYGALLNA---YVRARMRGNAELLIDKMRDKGYAVH 210 (535)
Q Consensus 138 ~~-~~~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~~~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 210 (535)
.. .....++.....++.+. +++++|...|++..+..| +...+..+... +...++.++|++.|++..+.+ +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01 12234444444444444 356777777776654423 34444444433 234466667777776665543 223
Q ss_pred cchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHH
Q 009424 211 SLPYNVMMTLYMK----IKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFS 286 (535)
Q Consensus 211 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 286 (535)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...+++..+.. +.+..++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 285 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHH
Confidence 4444444444433 345667777777666653 3355666667777777777777777777766532 34455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 287 TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
.+...|...+....+.. ...........+..++|+..|++.....+.. ...+..+...+...|
T Consensus 286 ~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNL-FRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTT-CCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-hhhhhhHHHHHHHhc
Confidence 55555432211000000 0000000011123556666676666644332 245666667777777
Q ss_pred CHhhHHHHHHHHHhcCCCCCHH--HHHHHHH-HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPR--IANLMMS-WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
++++|...|++..+....+... .+..+.. .+...|+.++|+..|++..+. .|+...+ .+..+.+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~---------~~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREK---------EKMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHH---------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHH---------HHHHHHHHH
Confidence 7777777777766554332211 1222222 223456777777777776653 2332221 122233444
Q ss_pred HHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 444 CLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 444 ~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+++...+ . -+.+..+|..+-..+...|++++|.+.+++.++.++..+.
T Consensus 418 ~~~~~l~----~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 418 IAKMRLS----K-NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHH----H-CC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHH----h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 5555541 1 1224456666777777777777777777777776655433
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=5e-14 Score=141.14 Aligned_cols=376 Identities=8% Similarity=-0.042 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHhcC-----CC-cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-------
Q 009424 106 KWELCRVVKELRKFRRYKHALEVYDWMNNRG-----ER-FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT------- 172 (535)
Q Consensus 106 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~------- 172 (535)
...|+.+...+...|+.++|++.|++.++.- .. .+....+++.+...|...|++++|...|++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4457777777778888888888887765421 00 1112233444444555555555555444432110
Q ss_pred --CCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHCCCCcCcchHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCC
Q 009424 173 --LKDRRVYGALLNAYVRA--RMRGNAELLIDKMRDKGYAVHSLPYNVMMTL---YMKIKEYDEVESMVSEMKEKGIRLD 245 (535)
Q Consensus 173 --~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~pd 245 (535)
.....+++.+..++.+. +++++|+..|++..+.. +-+...+..+... +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01223333333333332 23445555555444432 1112222222222 122344444454444444432 122
Q ss_pred HHHHHHHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-cchH
Q 009424 246 VYSYNIWLSSCGS----QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-RVPY 320 (535)
Q Consensus 246 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~ 320 (535)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...|.+.|++++|...|++..+. .|+ ..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 3333333222222 234444555544444321 333444444445555555555555555444432 122 2223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE 400 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 400 (535)
..+...|...+.... .. ............+..+.|...++...+..+. +...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 322222211100000 00 0000000011123467788888888776544 567888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHh--HHHHHHH-HHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCCh
Q 009424 401 GNFDKAEAFFNSIIEEGGKPNST--SWETLAE-GHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDM 477 (535)
Q Consensus 401 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~ 477 (535)
|++++|+..|++..+....|... .+..+.. .+.+.|++++|++.|+++. .+.|+....... .
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal------~i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV------KINQKSREKEKM---------K 412 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH------HSCCCCHHHHHH---------H
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcCcccHHHHHH---------H
Confidence 99999999999998864433221 1222222 3457799999999999999 466765443332 3
Q ss_pred hhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhcccccCCCC
Q 009424 478 GSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENNKKNDED 519 (535)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~~~~~i~ 519 (535)
+.+.++++..++..+.....|..|..+|...|+..++....+
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445667777777777777799999999999999888555444
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.4e-14 Score=129.67 Aligned_cols=223 Identities=16% Similarity=0.110 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCC-CCCCC----HHHHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK-AVNPN----WTTFSTM 288 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~~l 288 (535)
|..+...+...|++++|++.|++..+.. .+..++..+..++...|++++|...++...+.. ...++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444444444444444444443 344444444444444444444444444443210 00011 3455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI 368 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 368 (535)
...|.+.|++++|...|++..+. .|+ ...+...|++++|+..++.+....+. +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCH
Confidence 55555556666666555555442 222 12344455566666666665553211 124455666666666666
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHh
Q 009424 369 EGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGA 448 (535)
Q Consensus 369 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (535)
++|...++.+.+..+. +..++..+...|.+.|++++|...|++..+.... +...|..+...|.+.|++++|.+.|+++
T Consensus 156 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666655433 5566666666777777777777777766664332 4666666667777777777777777776
Q ss_pred HH
Q 009424 449 FA 450 (535)
Q Consensus 449 ~~ 450 (535)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.2e-14 Score=130.89 Aligned_cols=226 Identities=12% Similarity=0.044 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC--C----cch
Q 009424 246 VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR--D----RVP 319 (535)
Q Consensus 246 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~----~~~ 319 (535)
...+..+...+...|++++|...|+...+.. .+..++..+...|...|++++|...|++..+..... + ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 4567788889999999999999999998743 778899999999999999999999999987654321 2 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK 399 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 399 (535)
|..+...|...|++++|+..|++.....+. ...+...|++++|...++.+.+..+. +...+..+...|..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHH
Confidence 889999999999999999999999886544 23466778999999999998876433 56788899999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChh
Q 009424 400 EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMG 478 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~ 478 (535)
.|++++|...|++..+.... +...|..+...|...|++++|++.|+++.+ ..| +...|..+..++...|+++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE------KDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999986544 788999999999999999999999999993 334 4678888889999999999
Q ss_pred hHHHHHHHHhcCC
Q 009424 479 SKEAFVALLRQPG 491 (535)
Q Consensus 479 ~a~~~~~~~~~~~ 491 (535)
+|.+.+++..+..
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998876
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.9e-13 Score=121.32 Aligned_cols=198 Identities=18% Similarity=0.118 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLL 324 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 324 (535)
+...+..+...+.+.|++++|...|+...+.. +.+...+..+...|.+.|++++|...|++..+..+ .+...|..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 33444444444455555555555555544321 33444455555555555555555555555443211 1233444444
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHH
Q 009424 325 SLYGSV-----------GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM 393 (535)
Q Consensus 325 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 393 (535)
..+... |++++|+..|++..+..|. +...+..+...+...|++++|...++++++.. .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 444444 6777777777777665443 23456666677777777777777777777666 467777777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+|...|++++|+..|++..+..+. +...+..+...+.+.|++++|++.|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777777777777777777765443 56667777777777777777777776654
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=2.7e-13 Score=124.93 Aligned_cols=247 Identities=11% Similarity=0.014 Sum_probs=140.3
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc--chHHHHHHHHH
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDR--VPYHYLLSLYG 328 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~ 328 (535)
.....+...|++++|...|+...+.. +.+...+..+...|...|++++|...|++..+....++. ..|..+...|.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34445555566666666666555421 223335555555666666666666666665542211111 12555666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 408 (535)
..|++++|+..|++.....+. +...+..+...+...|++++|...+++..+..+. +...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666654333 2245666666666777777777777666554322 45555555523333457777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcccc---HHHHHHHHHHhHHhccCCCCCCC------HHHHHHHHHHHHhcCChhh
Q 009424 409 FFNSIIEEGGKPNSTSWETLAEGHIRERR---ILEALSCLKGAFAAEGAKSWRPK------PVNVINFFKACEEESDMGS 479 (535)
Q Consensus 409 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~g~~p~------~~~~~~ll~a~~~~g~~~~ 479 (535)
.|++..+.... +...|..+...+...|+ +++|...++++.+.. .-.|+ ...|..+...+...|++++
T Consensus 164 ~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 164 SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC---APGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH---GGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH---hcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777664332 45566666666666666 666777777666321 11122 1355556666777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 480 KEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 480 a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
|.+.+++..+..+.+......+....
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 77777777777766655555555444
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1.2e-13 Score=127.49 Aligned_cols=246 Identities=9% Similarity=-0.037 Sum_probs=165.0
Q ss_pred cCCHhHHHHHHHHHHHCCC---CcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHH
Q 009424 189 ARMRGNAELLIDKMRDKGY---AVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 265 (535)
.|++++|+..|+++.+... +.+..+|..+...+...|++++|++.|++..+.+ +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4677788888887776531 1135667777777888888888888888877764 33567777778888888888888
Q ss_pred HHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 266 EGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
...|+.+.+.. +.+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|+..+++...
T Consensus 97 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888877532 445677788888888888888888888887663 35554444555555666888888888877766
Q ss_pred hCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 009424 346 VFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY---DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNS 422 (535)
Q Consensus 346 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 422 (535)
..+.. ...+ .++..+...++.++|...+..+.+..... +..++..+...|.+.|++++|...|++..+.. |+
T Consensus 173 ~~~~~-~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~- 247 (275)
T 1xnf_A 173 KSDKE-QWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH- 247 (275)
T ss_dssp HSCCC-STHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT-
T ss_pred cCCcc-hHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch-
Confidence 53332 2223 35666667777777888777765543211 14667777888888888888888888887643 32
Q ss_pred hHHHHHHHHHHccccHHHHHHHH
Q 009424 423 TSWETLAEGHIRERRILEALSCL 445 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~ 445 (535)
.+.....++...|++++|++.+
T Consensus 248 -~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 -NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -TCHHHHHHHHHHHHHHHC----
T ss_pred -hHHHHHHHHHHHHHHHhhHHHH
Confidence 1333355666777777777665
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=3.2e-13 Score=119.85 Aligned_cols=198 Identities=11% Similarity=0.020 Sum_probs=106.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHH
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMA 289 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 289 (535)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 44445555555555555555555555555442 2244445555555555555555555555554321 33444555555
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHH
Q 009424 290 TMYIKM-----------GQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAM 358 (535)
Q Consensus 290 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 358 (535)
..|.+. |++++|...|++..+..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 667777777766655321 134456666666677777777777777766655 344556666
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
..++...|++++|...++.+.+..+. +...+..+...+.+.|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 67777777777777777776665543 56666667777777777777777766543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.5e-12 Score=118.37 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+..+...|.+.|++++|...|++..+.... +...|..+...|...|++++|.+.++++.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444444444332211 23334444444444444444444444444
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=2.2e-12 Score=114.76 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=10.1
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|..+...+...|++++|.+.++++.
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333344444444433333
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2e-12 Score=118.93 Aligned_cols=244 Identities=11% Similarity=0.087 Sum_probs=147.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD--VYSYNIWLSSC 256 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd--~~~~~~ll~~~ 256 (535)
+......+.+.|++++|+..|++..+.. +.+...|..+...+...|++++|++.|++..+.+-.|+ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444556667777777777777776653 23444677777777777777777777777776331111 22366666777
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
...|++++|...|+...+.. +.+..+|..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776532 3455677777777777777777777777665431 12334455554233334477777
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCC---HhhHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHHcCChhHH
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGD---IEGMEKIFEEWLSVK-SSYD------PRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A 406 (535)
+..|+++.+..+.. ...+..+...+...|+ .++|...++++.+.. ..|+ ..+|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTTC-HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCccc-hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777776654432 3445556666666666 666666666665432 1122 14566666777777777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~l 428 (535)
.+.|++..+..+. +...+..+
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHhcCcc-HHHHHHHh
Confidence 7777777665433 44444333
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.7e-12 Score=116.71 Aligned_cols=210 Identities=13% Similarity=0.037 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 246 VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 246 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+... .+...|..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHH
Confidence 5678888899999999999999999998642 55788999999999999999999999999987532 35678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 009424 326 LYGSVGKKEEVYRVWNLYRSVFPGVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 404 (535)
.|...|++++|+..|+++...+..|+ ...+..+...+...|++++|...++++.+.... +...+..+...|...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987323333 367888899999999999999999999887644 6888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHH
Q 009424 405 KAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVIN 466 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ 466 (535)
+|...|+++.+... .+...+..+...+...|++++|.++++++. ...|+...+..
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~ 247 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLK------RLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTSHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH------HHCCCCHHHHH
Confidence 99999999987544 367888899999999999999999999998 34566554443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.8e-12 Score=113.25 Aligned_cols=202 Identities=12% Similarity=0.043 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666666666666666666665542 2234556666666666666666666666665543 224455555555
Q ss_pred HHhcC-CCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCH
Q 009424 255 SCGSQ-GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKK 333 (535)
Q Consensus 255 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (535)
.+... |++++|...++.+.+....+.+...+..+...|.+.|++++|...|+++.+... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 66666 666666666666554111122244555555555555555555555555544321 1233444444445555555
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
++|...++++....+..+...+..+...+...|+.+.+..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555544443321122233333344444444444444444443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=2.2e-12 Score=124.11 Aligned_cols=244 Identities=8% Similarity=0.018 Sum_probs=119.0
Q ss_pred HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcccCCCcchHHHHHHHHHh
Q 009424 251 IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQ-VEKAEESLRRVESRITGRDRVPYHYLLSLYGS 329 (535)
Q Consensus 251 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (535)
.+...+.+.|++++|+..++.+.+.. +.+..+|+.+...|.+.|+ +++|+..|++..+..+ .+...|..+..++..
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Confidence 33334444444444444444444321 2234444444444444443 4555554444443221 133344444444445
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCChhHH--
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK-EGNFDKA-- 406 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-- 406 (535)
.|++++|+..|+++....+. +...|..+..++...|++++|...++++++..+. +...|+.+..+|.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHH
Confidence 55555555555555443332 2244555555555555555555555555554443 45555555555555 3443554
Q ss_pred ---HHHHHHHHHcCCCCCHhHHHHHHHHHHccc--cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcC------
Q 009424 407 ---EAFFNSIIEEGGKPNSTSWETLAEGHIRER--RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEES------ 475 (535)
Q Consensus 407 ---~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g------ 475 (535)
+..|++..+..+. +...|..+...+...| ++++|++.+.++. .-..+...+..+...+.+.|
T Consensus 257 ~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~------~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 257 EREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDLQ------PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 3555555554333 4555666665565555 4566666555542 11223344555555555542
Q ss_pred ---ChhhHHHHHHHH-hcCCCCChhhHHHHHHHhH
Q 009424 476 ---DMGSKEAFVALL-RQPGYRKEKDYMSLIGLTD 506 (535)
Q Consensus 476 ---~~~~a~~~~~~~-~~~~~~~~~~~~~L~~~y~ 506 (535)
.+++|.++++++ .+.++.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 235666666666 5555554445555555553
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.4e-11 Score=113.53 Aligned_cols=224 Identities=12% Similarity=0.009 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK----IKEYDEVESMVSEMKEKGIRLDVYSYN 250 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~pd~~~~~ 250 (535)
+..++..+-..|.+.|++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56667777777778888888888888777744 55677777777777 788888888888777765 566777
Q ss_pred HHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcchHHH
Q 009424 251 IWLSSCGS----QGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESRITGRDRVPYHY 322 (535)
Q Consensus 251 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 322 (535)
.+...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 77777777 78888888888777753 266677777777777 778888888877776643 4455666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh----cCCHhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 009424 323 LLSLYGS----VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR----IGDIEGMEKIFEEWLSVKSSYDPRIANLMM 394 (535)
Q Consensus 323 li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 394 (535)
+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666666 677777777777766542 23455566666666 777777777777766654 255666666
Q ss_pred HHHHH----cCChhHHHHHHHHHHHcC
Q 009424 395 SWYVK----EGNFDKAEAFFNSIIEEG 417 (535)
Q Consensus 395 ~~~~~----~g~~~~A~~~~~~m~~~~ 417 (535)
.+|.+ .+++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66766 677777777777766643
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.9e-13 Score=124.82 Aligned_cols=220 Identities=8% Similarity=-0.075 Sum_probs=131.4
Q ss_pred hcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIR---LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE 299 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~---pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 299 (535)
..|++++|++.|+++.+.... .+..++..+...+...|++++|...|+.+.+.. +.+..+|..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 346677777777777765321 134566667777777777777777777776532 445667777777777777777
Q ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 300 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
+|...|++..+..+ .+...|..+...|...|++++|+..|+++....+... .....+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777777765422 2455666677777777777777777777766543322 22233334455566666666666555
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP---NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..... +...+. ++..+...++.++|...+++..+..... +...|..+...|.+.|++++|.+.|+++.
T Consensus 172 ~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 172 EKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44322 222222 4555555556666666665554321100 13455566666666666666666666666
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=5e-13 Score=120.69 Aligned_cols=209 Identities=13% Similarity=0.046 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
.|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|+..|+++....+. +...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 34444444555555555555555544321 123334444455555555555555555555444322 2244455555555
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
..|++++|.+.++++.+.... +...+..+...|.+.|++++|...++++.+.... +...|..+...+...|++++|++
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666666655554432 4555666666666666666666666666554322 45566666666666666666666
Q ss_pred HHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHH
Q 009424 444 CLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSL 501 (535)
Q Consensus 444 ~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L 501 (535)
.|+++.+ . ...+..++..+...+...|++++|.+.++++.+..+.....+..+
T Consensus 181 ~~~~~~~----~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 181 QFAAVTE----Q-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHH----H-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHH----h-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 6666662 1 122345566666666666666666666666666665554444333
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.7e-11 Score=113.00 Aligned_cols=222 Identities=12% Similarity=0.010 Sum_probs=114.8
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcchHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESRITGRDRVPYHYLL 324 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 324 (535)
+..+...+...|++++|...|++..+ +.+...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33333444444444444444444443 1233344444444444 444444444444444332 333444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh----cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 325 SLYGS----VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR----IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 325 ~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
..|.. .+++++|+..|++....+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 455555555555444432 22344445555555 555566666665555543 44455555555
Q ss_pred HHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 397 YVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 397 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++.. +.+ | ...+..+-
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~----~~~--~-~~a~~~l~ 225 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC----ELE--N-GGGCFNLG 225 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH----HTT--C-HHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH----hCC--C-HHHHHHHH
Confidence 555 666666666666665542 44555566666666 666667776666666 222 2 44555555
Q ss_pred HHHHh----cCChhhHHHHHHHHhcCCCC
Q 009424 469 KACEE----ESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 469 ~a~~~----~g~~~~a~~~~~~~~~~~~~ 493 (535)
..+.. .+++++|.+.+++..+.++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 55655 66677777777766666543
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=5.6e-13 Score=130.37 Aligned_cols=275 Identities=9% Similarity=0.031 Sum_probs=159.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-
Q 009424 174 KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH----SLPYNVMMTLYMKIKEYDEVESMVSEMKEK----GIRL- 244 (535)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p- 244 (535)
.....+......+.+.|++++|...|++..+.+ +.+ ...|..+...+...|++++|...|++..+. +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345556666677777777777777777776653 112 245666777777777777777777765432 1111
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATMYIKMGQ--------------------VEK 300 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~ 300 (535)
...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2345666666777777777777777765532100112 3356667777777777 777
Q ss_pred HHHHHHHHHhccc----CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-c----hhhHHHHHHHHHhcCCHhh
Q 009424 301 AEESLRRVESRIT----GR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-T----NLGYHAMISSLARIGDIEG 370 (535)
Q Consensus 301 A~~~~~~m~~~g~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~g~~~~ 370 (535)
|...+++..+... .+ ...++..+...|...|++++|+..+++........ + ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 7777766533210 01 12245566666677777777777776665421111 1 1255566666666677777
Q ss_pred HHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccccHHH
Q 009424 371 MEKIFEEWLSVKSS-YD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-KPN----STSWETLAEGHIRERRILE 440 (535)
Q Consensus 371 a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~ 440 (535)
|...+++..+.... .+ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 76666665532111 01 34555666666666666666666666554210 011 3455556666666666666
Q ss_pred HHHHHHHhH
Q 009424 441 ALSCLKGAF 449 (535)
Q Consensus 441 A~~~~~~m~ 449 (535)
|.+.++++.
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.4e-12 Score=117.66 Aligned_cols=197 Identities=10% Similarity=0.045 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 293 (535)
|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence 3334444444444444444444444332 1233444444444444444444444444444321 233444444555555
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEK 373 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 373 (535)
..|++++|...|+++.+.. +.+...|..+...+...|++++|+..++++....+. +...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544322 123334444455555555555555555555443222 22344555555556666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 374 IFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
.++.+.+.... +..++..+...|.+.|++++|...|+++.+.
T Consensus 181 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66655544322 4555666666666666666666666666554
No 55
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=2.6e-10 Score=117.09 Aligned_cols=426 Identities=10% Similarity=-0.010 Sum_probs=278.9
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccC---hHHHHHHHHHHHhcCCCcccCHh
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRR---YKHALEVYDWMNNRGERFRLSAS 144 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~ 144 (535)
.|.-+|..+|..+.+.+... .+..+|++++.. .+.....|..-+..-.+.+. ++.+.++|+..+.... .+++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~-~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-~~~sv~ 140 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWK-QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-GNNDLS 140 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-CCCCHH
T ss_pred CCHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-CCCCHH
Confidence 46778888888888888888 888888888774 33355566677777777777 8888888888887641 135666
Q ss_pred HHHHHHHHHHhhCCH--------hhHHHHHhhCCC-----CCCCHHHHHHHHHHHH---------HcCCHhHHHHHHHHH
Q 009424 145 DAAIQLDLIAKVHGV--------ASAEDFFLSLPD-----TLKDRRVYGALLNAYV---------RARMRGNAELLIDKM 202 (535)
Q Consensus 145 ~~~~li~~~~~~g~~--------~~A~~~f~~~~~-----~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m 202 (535)
.+..-+....+.+++ +..+++|+.... ...+...|...+.... ..++++.++.+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 776666666555543 334467765321 1234567887776543 334577788888887
Q ss_pred HHCCCCcCcchHHHHHHHHHhcCC-------------hhHHHHHHHHHHHc--CCC---------------C-----C--
Q 009424 203 RDKGYAVHSLPYNVMMTLYMKIKE-------------YDEVESMVSEMKEK--GIR---------------L-----D-- 245 (535)
Q Consensus 203 ~~~g~~p~~~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~~--g~~---------------p-----d-- 245 (535)
.......-..+|......-...+. ++.|...+.++.+. ++. | +
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 753111112333332222211111 22333444443221 111 1 0
Q ss_pred -HHHHHHHHHHHhcCC-------CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcccCCC
Q 009424 246 -VYSYNIWLSSCGSQG-------STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE-ESLRRVESRITGRD 316 (535)
Q Consensus 246 -~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~ 316 (535)
...|...+.---..+ ..+.+..+|++.... ++-+...|-..+..+.+.|+.++|. .+|++.... ++.+
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 123444443322222 123456778887764 4667888888888888999999996 999998763 3345
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------CCc------------hhhHHHHHHHHHhcCCHhhHHHHH
Q 009424 317 RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP---------GVT------------NLGYHAMISSLARIGDIEGMEKIF 375 (535)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~~~------------~~~~~~ll~~~~~~g~~~~a~~~~ 375 (535)
...|-..+...-+.|++++|.++|+.+....+ .|+ ...|...+....+.|.++.|+.+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55678888889999999999999999876421 121 236778888888889999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccC
Q 009424 376 EEWLSVKSSYDPRIANLMMSWYVKEG-NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGA 454 (535)
Q Consensus 376 ~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 454 (535)
..+.+........+|...+..-.+.+ +.+.|.++|+...+.- .-+...|...+......|+.+.|..+|+++. .
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal----~ 532 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSI----D 532 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT----T
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHH----H
Confidence 99987611223344444444444444 5899999999998752 2266777888888888999999999999999 3
Q ss_pred CCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 455 KSWRP--KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 455 ~g~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
..-.+ ....|...+..-...|+.+.+.++.+++.+..+.++ ....+++-|
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 32211 235788888888899999999999999998887643 444446666
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=7.2e-12 Score=120.51 Aligned_cols=250 Identities=8% Similarity=-0.000 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE-YDEVESMVSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~pd~~~~~~ll~ 254 (535)
..+|+.+...+.+.|++++|+..|++..+.. +-+...|+.+...+...|+ +++|+..|++..+... -+...|..+-.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4566666667777777777777777766653 2345566666666666665 7777777766666542 25556666666
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHh-cCCH
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGS-VGKK 333 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~ 333 (535)
++...|++++|+..|+++.+.. +.+...|..+..++.+.|++++|+..|+++.+..+ .+...|+.+..++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 6666666666666666665432 34555666666666666666666666665554321 133344444444444 2222
Q ss_pred HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHH
Q 009424 334 EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG--NFDKAEAFFN 411 (535)
Q Consensus 334 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~ 411 (535)
++|+ .+.+...+++.++..+. +...|+.+...+.+.| ++++|.+.+.
T Consensus 252 ~eA~------------------------------~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 252 DRAV------------------------------LEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp SHHH------------------------------HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred hHHH------------------------------HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 3321 11114566666655544 5667777777777766 5777777777
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHccc---------cHHHHHHHHHHh-HHhccCCCCCCCHH-HHHHHHH
Q 009424 412 SIIEEGGKPNSTSWETLAEGHIRER---------RILEALSCLKGA-FAAEGAKSWRPKPV-NVINFFK 469 (535)
Q Consensus 412 ~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~~g~~p~~~-~~~~ll~ 469 (535)
++ +.. ..+...+..+...|.+.| ..++|+++|+++ . .+.|... .|..+..
T Consensus 301 ~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~------~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 301 DL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK------EKDTIRKEYWRYIGR 361 (382)
T ss_dssp HH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH------TTCGGGHHHHHHHHH
T ss_pred Hh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH------HhCchhHHHHHHHHH
Confidence 76 322 225667777777777764 258889999888 6 3556544 3444433
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=6e-12 Score=124.81 Aligned_cols=346 Identities=16% Similarity=0.137 Sum_probs=227.7
Q ss_pred HHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH---hhHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 009424 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV---ASAEDFFLSLPDTLKDRRVYGALLNAYVR 188 (535)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~~~li~~~~~ 188 (535)
+...+.+.|++++|.++|....+.| . ......+..+|...|+. ++|...|.+..+. +...+..|-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--Y---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--C---CTGGGTCC------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 4556677899999999999998877 2 22333455556667777 8999999998873 66677777775555
Q ss_pred cC-----CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 009424 189 AR-----MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYD---EVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG 260 (535)
Q Consensus 189 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g 260 (535)
.+ ++++|...|++..+.| +...+..|...|...+..+ ++.+.+......| +......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 7889999999999887 4558888888888766544 4555555555555 3455666667777777
Q ss_pred CHh----HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc---
Q 009424 261 STE----KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG---QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV--- 330 (535)
Q Consensus 261 ~~~----~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 330 (535)
.++ .+..++..... + .|+ .+..|..+|.+.| +.++|.+.|++..+.|. ++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~--~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN--T-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT--T-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CcccCHHHHHHHHHHHHc--C-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 444 44445555442 1 333 8888888999999 99999999999887664 3444445666666554
Q ss_pred -CCHHHHHHHHHHHHhhCCCCchhhHHHHHHH-H--HhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----
Q 009424 331 -GKKEEVYRVWNLYRSVFPGVTNLGYHAMISS-L--ARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG----- 401 (535)
Q Consensus 331 -g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 401 (535)
++.++|+..|++.. . . +...+..+... + ...++.++|.+.|++..+.| ++..+..|..+|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~-g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P-G--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G-G--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C-C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 68999999999987 2 1 22345555555 3 46889999999999998877 7778888888887 55
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh----
Q 009424 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE---- 473 (535)
Q Consensus 402 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~---- 473 (535)
++++|.+.|++.. . -+...+..|...|.. ..+.++|+++|++.. +.|. |+ ....+-..|..
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa----~~g~-~~--A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA----RNGQ-NS--ADFAIAQLFSQGKGT 370 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH----TTTC-TT--HHHHHHHHHHSCTTB
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH----hhCh-HH--HHHHHHHHHHhCCCC
Confidence 8999999998877 2 367777777777766 348999999999999 6663 32 33334444432
Q ss_pred cCChhhHHHHHHHHhcCCCCCh
Q 009424 474 ESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
..+.++|...++...+.|....
T Consensus 371 ~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHH
Confidence 3588999999999988886543
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=3.9e-11 Score=112.64 Aligned_cols=188 Identities=12% Similarity=-0.025 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHH
Q 009424 299 EKAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEE 377 (535)
Q Consensus 299 ~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 377 (535)
++|..+|++..+. +.| +...|..+...+.+.|++++|..+|++.....+.-....|..+...+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4555555544431 112 22244445555555555555555555554422211111444555555555555555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC-
Q 009424 378 WLSVKSSYDPRIANLMMSWYV-KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK- 455 (535)
Q Consensus 378 ~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~- 455 (535)
.++..+. +...|........ ..|+.++|.++|++..+..+. +...|..++..+.+.|+.++|..+|+++. ..
T Consensus 160 a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al----~~~ 233 (308)
T 2ond_A 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVL----TSG 233 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHH----HSS
T ss_pred HHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcc
Confidence 5443321 2333332222211 145555666666555543222 45555555555555566666666666655 22
Q ss_pred CCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 456 SWRP--KPVNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 456 g~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.+.| ....|..++......|+.+.|..+++++.+..+.
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 1233 2334555555555556666666666665555444
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=2.2e-12 Score=126.16 Aligned_cols=304 Identities=12% Similarity=0.021 Sum_probs=227.5
Q ss_pred cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCCHhHHHHHHHHhHhC---CCCC-C
Q 009424 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD----VYSYNIWLSSCGSQGSTEKMEGVFELMKVD---KAVN-P 280 (535)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~-~ 280 (535)
+....+......+...|++++|+..|++..+.+. .+ ..++..+...+...|++++|...+++.... .+-. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455667778889999999999999999998742 23 356788888999999999999999886531 1111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCC--------------------HHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGK--------------------KEE 335 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~ 335 (535)
...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2457888889999999999999999987653211 12 3378888889999999 999
Q ss_pred HHHHHHHHHhh----CCCCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCChhH
Q 009424 336 VYRVWNLYRSV----FPGVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YD----PRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 336 a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~ 405 (535)
|+..+++.... +..+. ..++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999886542 11111 146788889999999999999999988754211 12 3478889999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhh
Q 009424 406 AEAFFNSIIEEGGK-PN----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGS 479 (535)
Q Consensus 406 A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~ 479 (535)
|...+++..+.... ++ ..++..+...|...|++++|.+.++++.+..+..+-.+. ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988752111 12 567888899999999999999999999843322222221 4467777888999999999
Q ss_pred HHHHHHHHhcC----CCCChh--hHHHHHHHhHhhhhccc
Q 009424 480 KEAFVALLRQP----GYRKEK--DYMSLIGLTDEAVAENN 513 (535)
Q Consensus 480 a~~~~~~~~~~----~~~~~~--~~~~L~~~y~~~~~~~~ 513 (535)
|.+.+++..+. +..+.. .+..|...|...|....
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999987654 322222 67888899988887654
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=2.4e-12 Score=122.11 Aligned_cols=269 Identities=9% Similarity=0.027 Sum_probs=141.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHH
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVH-----SLPYNVMMTLYMKIKEYDEVESMVSEMKEK----GIR-LDVYS 248 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-pd~~~ 248 (535)
+......+.+.|++++|...|++..+.. |+ ...|..+...+...|++++|.+.+++..+. +-. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444455666777777777777766642 22 245666666777777777777777665432 111 12345
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATMYIKMGQ--------------------VEKAEES 304 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 304 (535)
+..+...+...|++++|...+++..+...-.++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 556666666777777777766665431100112 2356666666667777 6666666
Q ss_pred HHHHHhcc----cCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---Cc--hhhHHHHHHHHHhcCCHhhHHHH
Q 009424 305 LRRVESRI----TGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG---VT--NLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 305 ~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~--~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
+++..+.. ..+ ...++..+...|...|++++|+..+++....... +. ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66543210 000 1224555555666666666666666655432111 00 12455555556666666666666
Q ss_pred HHHHHhcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccccHHHHHHH
Q 009424 375 FEEWLSVKSS-YD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG-KPN----STSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 375 ~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
+++..+.... .+ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|.+.|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6555432111 01 33445555555666666666666555443100 001 23444555555556666666666
Q ss_pred HHHhH
Q 009424 445 LKGAF 449 (535)
Q Consensus 445 ~~~m~ 449 (535)
++++.
T Consensus 326 ~~~a~ 330 (338)
T 3ro2_A 326 AEKHL 330 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65555
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.9e-12 Score=126.94 Aligned_cols=282 Identities=10% Similarity=0.007 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC-c----chHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCCH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH-S----LPYNVMMTLYMKIKEYDEVESMVSEMKEK----G-IRLDV 246 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~pd~ 246 (535)
..+..+...+.+.|++++|...|++..+.+ |+ . ..|..+...|...|++++|++.|++..+. + .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344455566777788888888888777653 22 2 35677777777778888888777776543 1 11123
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHhHhCC---C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 009424 247 YSYNIWLSSCGSQGSTEKMEGVFELMKVDK---A-VNPNWTTFSTMATMYIKMGQ-----------------VEKAEESL 305 (535)
Q Consensus 247 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 305 (535)
.++..+...|...|++++|...+++..+.. + .+....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 445556666666666666666666654310 0 01112345555555555555 55555544
Q ss_pred HHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 306 RRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
++..+.. . ..+..+. ...+..+...+...|++++|...+++..+....
T Consensus 207 ~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 207 QENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 4432210 0 0000010 124445555555555555555555554432111
Q ss_pred -CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C----CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccC
Q 009424 385 -YD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-P----NSTSWETLAEGHIRERRILEALSCLKGAFAAEGA 454 (535)
Q Consensus 385 -~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 454 (535)
.+ ..++..+...|...|++++|...|++..+.... . ...++..+...|...|++++|.+.++++.+..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01 125555666666666777666666665542110 0 1345666666677777777777777776632211
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 455 KSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 455 ~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
.+..+ ...++..+...+...|++++|.+.+++..+..
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11111 12355556666777777777777777766554
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=3.5e-12 Score=125.14 Aligned_cols=277 Identities=11% Similarity=0.027 Sum_probs=173.3
Q ss_pred HhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCC-CH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHC----C-CCcCcc
Q 009424 143 ASDAAIQLDLIAKVHGVASAEDFFLSLPDTLK-DR----RVYGALLNAYVRARMRGNAELLIDKMRDK----G-YAVHSL 212 (535)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~ 212 (535)
...+..+...+...|++++|...|++..+..| +. .+|..+...|...|++++|...|++..+. + .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455667788999999999999998766533 33 47889999999999999999999987653 1 122356
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcCCC-----------------HhHHHHHHH
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKG-----IRLDVYSYNIWLSSCGSQGS-----------------TEKMEGVFE 270 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~pd~~~~~~ll~~~~~~g~-----------------~~~a~~~~~ 270 (535)
+|..+...|...|++++|.+.|++..+.. ......++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78889999999999999999999887641 11234577888888999999 888888887
Q ss_pred HhHhCC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCCHHHHHHHHH
Q 009424 271 LMKVDK---AVNP-NWTTFSTMATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 271 ~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~ 341 (535)
+..+.. +-.+ ...++..+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|+..|+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 765311 1001 1235556666666777777777776665432111 01 1134444444455555555555554
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C
Q 009424 342 LYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK-P 420 (535)
Q Consensus 342 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p 420 (535)
+.......... ......++..+...|...|++++|...|++..+.... +
T Consensus 288 ~al~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 288 RTLALAVELGE------------------------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHTTC------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC------------------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 44331110000 0001344555666666666666666666655432000 0
Q ss_pred ----CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 421 ----NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 421 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
...++..+...|...|++++|.+.++++.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13356666677777777777777777776
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=3.5e-12 Score=126.48 Aligned_cols=378 Identities=13% Similarity=0.051 Sum_probs=244.8
Q ss_pred HHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCh---HHHHHHHHHHHhcCCCcccCHhHHHHHHHH
Q 009424 76 IFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRY---KHALEVYDWMNNRGERFRLSASDAAIQLDL 152 (535)
Q Consensus 76 li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~~li~~ 152 (535)
+...+.+.|+++ +|+.+|++..+.|. ++ .+..+-..+...|+. ++|.++|....+. ++.....+...
T Consensus 9 la~~~~~~g~~~-~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTV-TAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHTC-CT--GGGTCC----------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHH-HHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 455667788999 99999999887763 22 223344444556666 8999999888743 34445555554
Q ss_pred HHhhC-----CHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHh---HHHHHHHHHHHCCCCcCcchHHHHHHHHHhc
Q 009424 153 IAKVH-----GVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRG---NAELLIDKMRDKGYAVHSLPYNVMMTLYMKI 224 (535)
Q Consensus 153 ~~~~g-----~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 224 (535)
+...+ +.++|...|++..+. -+...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 44444 788999999887653 23347777778887766544 4555566655565 567888888899888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc----CC
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG---STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM----GQ 297 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~ 297 (535)
+.++++......+.+.-...+...+..|...|...| +.++|.+.|+...+.. +++...+..|..+|... ++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCC
Confidence 866665555444433322334447888888888899 9999999999998643 66777667788888665 79
Q ss_pred HHHHHHHHHHHHhcccCCCcchHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC-----CHh
Q 009424 298 VEKAEESLRRVESRITGRDRVPYHYLLSL-Y--GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG-----DIE 369 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-----~~~ 369 (535)
.++|...|++.. . -+...+..+-.. | ...++.++|+..|++..+.+ +...+..+...|. .| +.+
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999986 2 345566666665 4 46889999999999988765 3455666666666 55 999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cccHHHH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVK----EGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR----ERRILEA 441 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 441 (535)
+|...|++.. .| ++..+..|..+|.. ..++++|...|++..+.| +......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999876 33 77788888888876 348999999999998865 34555666666653 4689999
Q ss_pred HHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhc
Q 009424 442 LSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 442 ~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
..+|+... +.|. ++.......+..-...++.++|.++.++..+
T Consensus 378 ~~~~~~A~----~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 378 YVFSQLAK----AQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHH----TTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999 6663 2222222223222233455666666665543
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=6.6e-11 Score=111.10 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCCCH-------hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHH
Q 009424 228 DEVESMVSEMKEKGIRLDVYSYNIWLSSCG-------SQGST-------EKMEGVFELMKVDKAVNPNWTTFSTMATMYI 293 (535)
Q Consensus 228 ~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 293 (535)
++|..+|++..+.. +-+...|..+...+. +.|++ ++|..+|++..+.. -+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 44555555555432 224444444444443 24554 67777777776411 1334556777777777
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCc-c-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH-hcCCHhh
Q 009424 294 KMGQVEKAEESLRRVESRITGRDR-V-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA-RIGDIEG 370 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~-~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~ 370 (535)
+.|++++|..+|++..+ ..|+. . .|..+...+.+.|++++|+.+|++..+..+.. ...|........ ..|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-HHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-THHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777765 23432 2 67777777777777777777777776643322 223332222221 2578888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCC--CHhHHHHHHHHHHccccHHHHHHHHHH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG-GKP--NSTSWETLAEGHIRERRILEALSCLKG 447 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (535)
|..+|+..++..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877765443 67777778888888888888888888887752 333 356777777777778888888888888
Q ss_pred hHH
Q 009424 448 AFA 450 (535)
Q Consensus 448 m~~ 450 (535)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 773
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=5.9e-12 Score=119.35 Aligned_cols=279 Identities=11% Similarity=0.016 Sum_probs=209.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCCHhHHHHHHHHhHhC---CC-CCCCHH
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD----VYSYNIWLSSCGSQGSTEKMEGVFELMKVD---KA-VNPNWT 283 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~-~~~~~~ 283 (535)
..+......+...|++++|+..|++..+... .+ ...+..+...+...|++++|...+++..+. .+ .+....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566788899999999999999998742 23 367788888999999999999999886532 11 112255
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCC--------------------HHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGK--------------------KEEVYR 338 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~a~~ 338 (535)
++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7888899999999999999999997653221 22 3377788889999999 999999
Q ss_pred HHHHHHhh----CCCCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCChhHHHH
Q 009424 339 VWNLYRSV----FPGVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YD----PRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 339 ~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~ 408 (535)
.+++.... +..+. ...+..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99886542 11111 246778888999999999999999988754211 12 3377888999999999999999
Q ss_pred HHHHHHHcCCC-CC----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHH
Q 009424 409 FFNSIIEEGGK-PN----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEA 482 (535)
Q Consensus 409 ~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~ 482 (535)
.+++..+.... ++ ..++..+...|...|++++|.+.++++.+..+..+-.+. ..++..+...+...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99987752111 12 557788889999999999999999998843222221111 3467778889999999999999
Q ss_pred HHHHHhcCC
Q 009424 483 FVALLRQPG 491 (535)
Q Consensus 483 ~~~~~~~~~ 491 (535)
.+++..+..
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999988764
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=4.1e-11 Score=103.08 Aligned_cols=165 Identities=12% Similarity=0.065 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
+..+|..+...|.+.|++++|...|++..+..+ -+...|..+...|.+.|++++|+..+.......+.. ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 455677777777777777777777777665422 244566667777777777777777777776654442 345556666
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
.+...++++.+...+....+..+. +...+..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 677777777777777777665543 5667777777777777777777777777765443 56677777777777777777
Q ss_pred HHHHHHHhH
Q 009424 441 ALSCLKGAF 449 (535)
Q Consensus 441 A~~~~~~m~ 449 (535)
|++.|+++.
T Consensus 160 A~~~~~~al 168 (184)
T 3vtx_A 160 AVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777777
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.5e-12 Score=122.34 Aligned_cols=246 Identities=12% Similarity=0.049 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-------CCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDK-------GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK------G 241 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 241 (535)
+..+|..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|.+.|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888888888888888888888887762 22334556777778888888888888888777654 1
Q ss_pred C-CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCC-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 009424 242 I-RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK-----AV-NPNWTTFSTMATMYIKMGQVEKAEESLRRVESR--- 311 (535)
Q Consensus 242 ~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 311 (535)
- +....++..+...+...|++++|...+++..+.. +- +....++..+...|...|++++|..+|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 1234456666666777777777777776665421 11 112334555566666666666666666665442
Q ss_pred ---ccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------CchhhHHHHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 312 ---ITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPG-------VTNLGYHAMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 312 ---g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
+..| ...++..+...|...|++++|+..|+++....+. +.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 0011 1224444555555555555555555555432100 00000000
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 381 VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 381 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
....+..+...+...+.+.+|...++....... .+..+|..+...|.+.|++++|.++|+++.
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111222233333444555555556655554211 145566777777777777777777777766
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2.8e-11 Score=120.71 Aligned_cols=215 Identities=8% Similarity=0.006 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH-hHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009424 227 YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGST-EKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL 305 (535)
Q Consensus 227 ~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (535)
+++++..+++..... +.+...+..+..++...|++ ++|.+.|++..+.. +.+...|..+...|.+.|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555544432 23566677777777777777 77777777776532 345667777777777777777777777
Q ss_pred HHHHhcccCCCcchHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc--------CCH
Q 009424 306 RRVESRITGRDRVPYHYLLSLYGSV---------GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI--------GDI 368 (535)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------g~~ 368 (535)
++..+. .|+...|..+...|... |++++|+..|++.....+. +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 777663 35556677777777777 7888888888887776444 345677777777777 888
Q ss_pred hhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHH
Q 009424 369 EGMEKIFEEWLSVKSS--YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLK 446 (535)
Q Consensus 369 ~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 446 (535)
++|...|++..+..+. -+...|..+..+|...|++++|...|++..+.... +...|..+...+...|++++|++.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888776441 27788888888888899999999999888876544 66778888888888888888887654
Q ss_pred Hh
Q 009424 447 GA 448 (535)
Q Consensus 447 ~m 448 (535)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=4.8e-11 Score=115.85 Aligned_cols=232 Identities=13% Similarity=0.022 Sum_probs=162.7
Q ss_pred HHHHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC------cchHH
Q 009424 252 WLSSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD------RVPYH 321 (535)
Q Consensus 252 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~ 321 (535)
....+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++..+.-...+ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444567788888888888887642111122 34677788888888888888888888755322111 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-----hhhHHHHHHHHHhcCCHhhHHHHHHHHHhc----CC-CCCHHHHH
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRSVFPGVT-----NLGYHAMISSLARIGDIEGMEKIFEEWLSV----KS-SYDPRIAN 391 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 391 (535)
.+...|...|++++|+..|++........+ ..++..+...|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888999999888888765322111 146778888889999999999998888762 22 22456788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC----CCCCHhHHHHHHHHHHcccc---HHHHHHHHHHhHHhccCCCCCCC-HHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEG----GKPNSTSWETLAEGHIRERR---ILEALSCLKGAFAAEGAKSWRPK-PVN 463 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~g~~p~-~~~ 463 (535)
.+...|.+.|++++|...+++..+.. -......+..+...|...|+ .++|+.++++.. ..|+ ...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-------~~~~~~~~ 341 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-------LYADLEDF 341 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-------CHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-------CHHHHHHH
Confidence 88899999999999999998876521 11112335667777888888 777777777654 2332 346
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
+..+...+...|++++|.+.+++..+.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 667778889999999999999887643
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.7e-09 Score=110.98 Aligned_cols=410 Identities=10% Similarity=0.011 Sum_probs=276.8
Q ss_pred ceeecccccccccccccc----------c-cccchHHHHHHHhccCC---CCccHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 009424 50 IKCSMSQIHSYGTVDFER----------R-PMIKWNAIFRKLSLMDN---PQLGSASVLNDWEKGG-RSLTKWELCRVVK 114 (535)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~----------~-~~~~~n~li~~~~~~g~---~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~ 114 (535)
...++....+.+.+..+| | ..-.|..-+..-.+.++ .. .+..+|++.+... ..|+...|..-++
T Consensus 69 W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~-~v~~lfeRal~~~~~~~sv~LW~~Yl~ 147 (679)
T 4e6h_A 69 YVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAA-VIEPVLARCLSKELGNNDLSLWLSYIT 147 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHH-HHHHHHHHHTCSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 344555444445554333 3 34568888888888888 88 9999999998753 2488888888888
Q ss_pred HHHHccCh--------HHHHHHHHHHHhc-CCCc-c-cCHhHHHHHHHHHH---------hhCCHhhHHHHHhhCCCCCC
Q 009424 115 ELRKFRRY--------KHALEVYDWMNNR-GERF-R-LSASDAAIQLDLIA---------KVHGVASAEDFFLSLPDTLK 174 (535)
Q Consensus 115 ~~~~~~~~--------~~a~~~~~~~~~~-g~~~-~-~~~~~~~~li~~~~---------~~g~~~~A~~~f~~~~~~~~ 174 (535)
-..+.++. +...++|+..+.. | . . .+...+...+.... ..++++.++++|++....+.
T Consensus 148 f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG--~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~ 225 (679)
T 4e6h_A 148 YVRKKNDIITGGEEARNIVIQAFQVVVDKCA--IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPM 225 (679)
T ss_dssp HHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHhC--cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCcc
Confidence 77777664 3345788877653 4 2 2 34456666666543 34568889999999886422
Q ss_pred C--HHHHHHHHHHHHHcC-------------CHhHHHHHHHHHHH--CCCC---cC--------------------cchH
Q 009424 175 D--RRVYGALLNAYVRAR-------------MRGNAELLIDKMRD--KGYA---VH--------------------SLPY 214 (535)
Q Consensus 175 ~--~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~--~g~~---p~--------------------~~~~ 214 (535)
. ..+|......--..+ +++.|...+.++.. .++. |. ...|
T Consensus 226 ~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW 305 (679)
T 4e6h_A 226 DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIW 305 (679)
T ss_dssp SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHH
Confidence 2 245544433222212 12334555554432 1211 11 1235
Q ss_pred HHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHH-HHHHHhHhCCCCCCCHHHHH
Q 009424 215 NVMMTLYMKIK-------EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKME-GVFELMKVDKAVNPNWTTFS 286 (535)
Q Consensus 215 ~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~ 286 (535)
...+..--..+ ..+.+..+|++.+.. ++-+...|-.....+...|+.+.|. ++|+..... ++.+...|-
T Consensus 306 ~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl 382 (679)
T 4e6h_A 306 LEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAF 382 (679)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 55554433322 123456778888876 3447788888888888889999996 999999863 466777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccc---------CCC------------cchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 287 TMATMYIKMGQVEKAEESLRRVESRIT---------GRD------------RVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~g~---------~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
..+...-+.|+++.|..+|+.+.+... .|+ ...|...+....+.|..+.|..+|.+...
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999876421 132 23688888888889999999999999987
Q ss_pred hCCCCchhhHHHHHHHHHhc-CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CH
Q 009424 346 VFPGVTNLGYHAMISSLARI-GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP--NS 422 (535)
Q Consensus 346 ~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~ 422 (535)
..+......|...+..-.+. ++.+.|.++|+..++.- .-+...|...++.....|+.+.|..+|++.......+ ..
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 51222223343333333344 45899999999998873 3377788899999999999999999999998754322 35
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACE 472 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~ 472 (535)
..|...+..-.+.|+.+.+.++.+++.+ ..|+......+..-|.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~------~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFE------KFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHH------HSTTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCcHHHHHHHHhc
Confidence 6788888888899999999999999993 4566555555555443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=3e-12 Score=120.15 Aligned_cols=248 Identities=14% Similarity=0.077 Sum_probs=168.4
Q ss_pred cccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC---------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----
Q 009424 139 FRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT---------LKDRRVYGALLNAYVRARMRGNAELLIDKMRDK---- 205 (535)
Q Consensus 139 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 205 (535)
.+.....+..+...|...|++++|..+|+++.+. .....++..+...|...|++++|...|++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999999999987651 223567889999999999999999999998764
Q ss_pred --C-CCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhC
Q 009424 206 --G-YAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK------GIRL-DVYSYNIWLSSCGSQGSTEKMEGVFELMKVD 275 (535)
Q Consensus 206 --g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 275 (535)
+ .+....+|..+...|...|++++|.+.|++..+. +-.| ...++..+...+...|++++|..+++...+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 1234567888999999999999999999998875 2222 4556788889999999999999999998753
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-------CCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 276 ------KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRIT-------GRDRVPYHYLLSLYGSVGKKEEVYRVWNL 342 (535)
Q Consensus 276 ------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (535)
...+....++..+...|.+.|++++|...|+++.+... .+.........
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~------------------ 244 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA------------------ 244 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH------------------
Confidence 11122345788899999999999999999999876311 11111111111
Q ss_pred HHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 343 YRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 343 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
..+..+...+...+.+.++...+........ .+..++..+..+|.+.|++++|.+.|++..+
T Consensus 245 ----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 ----------EEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------HHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122223333344555555555555443221 2456677777888888888888888877665
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=4.1e-11 Score=116.37 Aligned_cols=164 Identities=12% Similarity=0.035 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-C----cchHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCc-hh
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGR-D----RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV----FPGVT-NL 353 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~ 353 (535)
+++.+...|...|++++|...|++..+..... + ..++..+...|...|++++|+..|++.... +..|. ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 34444445555555555555554443221110 0 124444555555555555555555554431 11111 24
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCC-CHhHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKS----SYDPRIANLMMSWYVKEGN---FDKAEAFFNSIIEEGGKP-NSTSW 425 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~ 425 (535)
++..+...+...|++++|...+++..+... ......+..+...|...|+ +++|..++++.. ..| ....+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHH
Confidence 455555555556666666555555443210 1011223445555556666 555555555441 111 23345
Q ss_pred HHHHHHHHccccHHHHHHHHHHhHH
Q 009424 426 ETLAEGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 426 ~~li~~~~~~g~~~~A~~~~~~m~~ 450 (535)
..+...|...|++++|.+.|+++.+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566667777777777777776653
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=1.2e-10 Score=100.18 Aligned_cols=169 Identities=8% Similarity=-0.023 Sum_probs=148.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 009424 316 DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMS 395 (535)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 395 (535)
+...|..+-..|.+.|++++|+..|++..+..|. +...+..+...+.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5667889999999999999999999999987655 4467889999999999999999999999877655 6788888899
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhc
Q 009424 396 WYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEE 474 (535)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~ 474 (535)
.+...++++.|...+++..+.... +...+..+...|.+.|++++|++.|+++.+ +.| +...|..+..++...
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTIS------IKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHH------hcchhhhHHHHHHHHHHHC
Confidence 999999999999999999886554 788899999999999999999999999993 345 466888888999999
Q ss_pred CChhhHHHHHHHHhcCCCC
Q 009424 475 SDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 475 g~~~~a~~~~~~~~~~~~~ 493 (535)
|++++|.+.+++.++..+.
T Consensus 155 g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHhCCcc
Confidence 9999999999999987653
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=4.6e-11 Score=119.21 Aligned_cols=186 Identities=10% Similarity=-0.059 Sum_probs=110.2
Q ss_pred chHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 009424 318 VPYHYLLSLYGSVGKK-EEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW 396 (535)
Q Consensus 318 ~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 396 (535)
..|..+...|...|++ ++|++.|++..+..+. +...|..+...|...|++++|.+.|++..+.. |+...+..+...
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~ 179 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHH
Confidence 3444444444555555 5555555554443322 22345555555555555666665555555443 334555555555
Q ss_pred HHHc---------CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc--------ccHHHHHHHHHHhHHhccCCCCCC
Q 009424 397 YVKE---------GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE--------RRILEALSCLKGAFAAEGAKSWRP 459 (535)
Q Consensus 397 ~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~g~~p 459 (535)
|... |++++|...|++..+.... +...|..+...|... |++++|++.|+++.+ +.|
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~p 252 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK------VDR 252 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH------HCG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH------hCC
Confidence 5555 6666666666666665433 566666666666666 777777777777762 234
Q ss_pred ----CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 460 ----KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 460 ----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+...|..+..++...|++++|.+.+++..+..+.....+..+..+|...|+..+
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777777777666665566666666666666555
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=5.3e-10 Score=108.02 Aligned_cols=302 Identities=11% Similarity=-0.013 Sum_probs=189.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCc-----chHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----HH
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHS-----LPYNVMMTLYMKIKEYDEVESMVSEMKEKGI-RLDV----YS 248 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~----~~ 248 (535)
+......+...|++++|...+++..... +++. .+++.+...+...|++++|.+.+++..+... .++. .+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444456677899999999999887753 2221 1456667778888999999999888765321 1122 23
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC----Ccc
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDK---AVN--P-NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR----DRV 318 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~ 318 (535)
+..+...+...|++++|...+++..+.. +.. | ...++..+...|...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4566677888899999988888876421 111 2 23456667778888899999988888876543221 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hhHH-----HHHHHHHhcCCHhhHHHHHHHHHhcCCCCC---HHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-LGYH-----AMISSLARIGDIEGMEKIFEEWLSVKSSYD---PRI 389 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 389 (535)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5666777788888888888888887654222211 1111 223346678888888888887765432211 224
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCH-hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEE----GGKPNS-TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNV 464 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~ 464 (535)
+..+...+...|++++|...+++.... |..++. ..+..+...+...|+.++|.+.+++..+.....|
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-------- 327 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-------- 327 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc--------
Confidence 556677778888888888888776542 111122 2555666777788888888888888873221111
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 465 INFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 465 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.+..+...| +....+++.+.+..+.
T Consensus 328 --~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 328 --FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp --CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred --HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 112233333 4556666666666554
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=2.1e-09 Score=103.81 Aligned_cols=296 Identities=9% Similarity=-0.005 Sum_probs=199.1
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhhCCCCC--CCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CcCc----chH
Q 009424 146 AAIQLDLIAKVHGVASAEDFFLSLPDTL--KDR----RVYGALLNAYVRARMRGNAELLIDKMRDKGY-AVHS----LPY 214 (535)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~f~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~ 214 (535)
.......+...|++++|...+++..... .+. .+++.+...|...|++++|...+++.....- .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778899999999987754331 222 2566777788889999999999988765210 0121 235
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCC---CCCCCHHH
Q 009424 215 NVMMTLYMKIKEYDEVESMVSEMKEK----GIR--L-DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK---AVNPNWTT 284 (535)
Q Consensus 215 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 284 (535)
+.+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..... +......+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888999999999999888653 221 2 23456667778889999999999999877532 11112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-chHHH-----HHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhhH
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDR-VPYHY-----LLSLYGSVGKKEEVYRVWNLYRSVFPGVT---NLGY 355 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~ 355 (535)
+..+...+...|++++|...+++.......++. ..|.. .+..+...|++++|...+++.....+..+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 778888899999999999999988654333322 22322 23447789999999999988876443321 1245
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcC----CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVK----SSYDP-RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 430 (535)
..+...+...|++++|...++...... ..++. .++..+..++...|+.++|...+++...... . .-.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence 677788889999999999998876532 11122 3566677888899999999999988765210 0 11223
Q ss_pred HHHccccHHHHHHHHHHhH
Q 009424 431 GHIRERRILEALSCLKGAF 449 (535)
Q Consensus 431 ~~~~~g~~~~A~~~~~~m~ 449 (535)
.+...| +....+++...
T Consensus 331 ~~~~~g--~~~~~ll~~~~ 347 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLI 347 (373)
T ss_dssp HHHTTH--HHHHHHHHHHH
T ss_pred HHHHcc--HHHHHHHHHHH
Confidence 344444 55666666666
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=9.1e-10 Score=106.58 Aligned_cols=228 Identities=11% Similarity=0.013 Sum_probs=157.5
Q ss_pred HHHhcCCCHhHHHHHHHHhHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-C-----CcchHHHH
Q 009424 254 SSCGSQGSTEKMEGVFELMKVDKAVNPN----WTTFSTMATMYIKMGQVEKAEESLRRVESRITG-R-----DRVPYHYL 323 (535)
Q Consensus 254 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-----~~~~~~~l 323 (535)
..+...|++++|...|++..+...-.++ ..++..+...|...|+++.|...+++..+.... + ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3456778888888888877642211223 346777778888888888888888876543211 1 13356677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCC---CC--chhhHHHHHHHHHhcCCHhhHHHHHHHHHh-----cCCCCCHHHHHHH
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFP---GV--TNLGYHAMISSLARIGDIEGMEKIFEEWLS-----VKSSYDPRIANLM 393 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 393 (535)
...|...|++++|++.|++...... .+ ...++..+...+...|++++|...+++..+ ..+. ...++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence 7888888888888888887755211 11 114677788888889999999998888876 3333 36677888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCC---C-CHhHHHHHHHHHHcccc---HHHHHHHHHHhHHhccCCCCCCC-HHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGK---P-NSTSWETLAEGHIRERR---ILEALSCLKGAFAAEGAKSWRPK-PVNVI 465 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~g~~p~-~~~~~ 465 (535)
...|.+.|++++|...+++..+.... | ....+..+...|...++ .++|+..+++.. ..|+ ...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-------~~~~~~~~~~ 340 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-------LHAYIEACAR 340 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-------CHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-------ChhHHHHHHH
Confidence 88999999999999999988763211 1 23345556666667777 777777777643 2232 34556
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhc
Q 009424 466 NFFKACEEESDMGSKEAFVALLRQ 489 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~~~ 489 (535)
.+...+...|++++|.+.+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788899999999999888764
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1e-09 Score=93.91 Aligned_cols=163 Identities=15% Similarity=0.090 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH
Q 009424 144 SDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM 222 (535)
Q Consensus 144 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 222 (535)
..+..+...+...|++++|...|+++... +.+..+|..+...+.+.|++++|...|++..+.. +.+...|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445566667777777777777776655 3456677777777777777777777777776653 334566666667777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAE 302 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (535)
..|++++|.+.++++.+.. +.+...+..+..++...|++++|...++...+.. +.+..++..+...|.+.|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777766653 3355566666666666777777777776666432 345566666666666666666666
Q ss_pred HHHHHHHh
Q 009424 303 ESLRRVES 310 (535)
Q Consensus 303 ~~~~~m~~ 310 (535)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=1.9e-10 Score=111.32 Aligned_cols=228 Identities=11% Similarity=0.006 Sum_probs=141.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCC-----CHHHHHH
Q 009424 218 MTLYMKIKEYDEVESMVSEMKEKGI-RLD----VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP-----NWTTFST 287 (535)
Q Consensus 218 i~~~~~~g~~~~a~~~~~~m~~~g~-~pd----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 287 (535)
...+...|++++|+..|++..+.-. .+| ..++..+...|...|+++.|...+.+..+...-.+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445567777777777777665311 122 34556666677777777777777766553111011 1345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCchhhHHH
Q 009424 288 MATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGKKEEVYRVWNLYRS-----VFPGVTNLGYHA 357 (535)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 357 (535)
+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|+..|++... ..+.. ..++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHH
Confidence 777777788888887777776542111 11 23566677777778888888888877665 22222 456777
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCC---C-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCC-HhHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSS---Y-DPRIANLMMSWYVKEGN---FDKAEAFFNSIIEEGGKPN-STSWETLA 429 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~---~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li 429 (535)
+...+.+.|++++|...+++..+.... + ....+..+...|...|+ +++|...+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 777888888888888888877654321 1 12344555556666677 66666666652 22222 34556677
Q ss_pred HHHHccccHHHHHHHHHHhH
Q 009424 430 EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~ 449 (535)
..|...|++++|.+.|+++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 88888888888888888876
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.1e-09 Score=97.65 Aligned_cols=209 Identities=8% Similarity=-0.024 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHH
Q 009424 280 PNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359 (535)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 359 (535)
.|...+......|.+.|++++|...|++..+....++...+..+..++...|++++|+..|++.....+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567777777788888888888888888776554356666666777788888888888888887775443 335677777
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HhHHHHHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDP-------RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN---STSWETLA 429 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li 429 (535)
..+...|++++|...+++..+..+. +. ..|..+...+.+.|++++|...|++.. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT--DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH--hcCCCcccHHHHHHHH
Confidence 7778888888888888877765543 34 446666677777777777777777653 45554 34555555
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
..|...|+ .+++++. ..+ ..+...|.... ....+.+++|...+++..+..+........|...
T Consensus 161 ~~~~~~~~-----~~~~~a~----~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKAT----PLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHG----GGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHH----hcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 55544432 3344444 111 12233333332 2334557888888888888877766555555443
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=1.8e-09 Score=92.36 Aligned_cols=161 Identities=14% Similarity=0.004 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 285 FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++....+. +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 33344444444444444444444432211 12333444444444444444444444444443221 22334444455555
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
.|++++|.+.++.+.+.... +...+..+...|.+.|++++|...+++..+.... +...|..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555443322 4445555555555556666666666555554322 445555555556666666666666
Q ss_pred HHHhH
Q 009424 445 LKGAF 449 (535)
Q Consensus 445 ~~~m~ 449 (535)
++++.
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=4.5e-09 Score=93.64 Aligned_cols=206 Identities=10% Similarity=0.042 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHH
Q 009424 244 LDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN-PNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHY 322 (535)
Q Consensus 244 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 322 (535)
.|...+......+...|++++|...|+...+.. + ++...+..+...|.+.|++++|...|++..+..+ .+...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 466788888899999999999999999998642 3 7888888899999999999999999999987432 24568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch------hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC---HHHHHHH
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTN------LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD---PRIANLM 393 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 393 (535)
+...|...|++++|+..|++.....+.... ..|..+...+...|++++|.+.++++++. .|+ ...+..+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999987655321 35778888899999999999999999775 344 4667777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFF 468 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll 468 (535)
...|...| ..+++++...+.. +...|.... ....+.+++|+..|++.. .+.|+......++
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~------~l~p~~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAV------TLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHH------HHCTTCHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHh------hcCCCCHHHHHHH
Confidence 77776554 3445555554322 444454433 345677999999999999 3567655444333
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=9.9e-10 Score=114.15 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMI 359 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 359 (535)
+...++.|...|.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++..+..+. +...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 3456666666777777777777777666553 23 3445666666666666666666666666654333 224555666
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHH
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 439 (535)
.++.+.|++++|.+.|++.++..+. +...|+.+..+|.+.|++++|++.|++..+.... +...|..+...|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 6666666666666666666555433 4556666666666666666666666666554333 4555666666666666666
Q ss_pred HHHHHHHHhH
Q 009424 440 EALSCLKGAF 449 (535)
Q Consensus 440 ~A~~~~~~m~ 449 (535)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=1.4e-09 Score=113.11 Aligned_cols=165 Identities=10% Similarity=0.045 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHYL 323 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l 323 (535)
+...|+.|-..+.+.|++++|++.|++..+.. +-+..+|+.+...|.+.|++++|...|++..+. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 46789999999999999999999999998642 456889999999999999999999999999874 44 46689999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
..+|.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|.+.|++.++..+. +...+..+..+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999986554 3468899999999999999999999999987755 788999999999999999
Q ss_pred hHHHHHHHHHHH
Q 009424 404 DKAEAFFNSIIE 415 (535)
Q Consensus 404 ~~A~~~~~~m~~ 415 (535)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=1.1e-09 Score=100.78 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=84.5
Q ss_pred cCCHhHHHHHHHHHHH-------CCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CCCHHHHHHHHH
Q 009424 189 ARMRGNAELLIDKMRD-------KGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK------GI-RLDVYSYNIWLS 254 (535)
Q Consensus 189 ~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~pd~~~~~~ll~ 254 (535)
.|++++|...|++..+ .+.+....+|..+...|...|++++|+..|++..+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555433 121223456666777777777777777777766543 11 123345666666
Q ss_pred HHhcCCCHhHHHHHHHHhHhCC-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------ccCC-CcchHH
Q 009424 255 SCGSQGSTEKMEGVFELMKVDK-----A-VNPNWTTFSTMATMYIKMGQVEKAEESLRRVESR------ITGR-DRVPYH 321 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~ 321 (535)
.+...|++++|...+.+..+.. . -+....++..+...|...|++++|...|++..+. ...| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666677777766666665320 0 0122345555666666666666666666665442 0011 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
.+...|...|++++|+..|++...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=1.2e-09 Score=100.65 Aligned_cols=228 Identities=14% Similarity=0.115 Sum_probs=156.2
Q ss_pred hcCCCHhHHHHHHHHhHhC------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc------cCC-CcchHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVD------KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI------TGR-DRVPYHYL 323 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~-~~~~~~~l 323 (535)
...|+++.|...+++..+. ...+....++..+...|...|++++|...|++..+.. -.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776541 1112345678889999999999999999999987541 112 34578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh-----CC-CCc-hhhHHHHHHHHHhcCCHhhHHHHHHHHHhc------CCCC-CHHH
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSV-----FP-GVT-NLGYHAMISSLARIGDIEGMEKIFEEWLSV------KSSY-DPRI 389 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~ 389 (535)
...|...|++++|+..|++.... +. .|+ ...+..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 12 232 367888889999999999999999998765 1122 3567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCC-HhHHHHHHHHHHcccc------HHHHHHHHHHhHHhccCC
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEE-------GGKPN-STSWETLAEGHIRERR------ILEALSCLKGAFAAEGAK 455 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~ 455 (535)
+..+...|.+.|++++|..+|++..+. ...+. ...|..+...+...+. +.++...++...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 245 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK------ 245 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC------
Confidence 888999999999999999999999884 11222 2333333333333222 222332332222
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 009424 456 SWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQP 490 (535)
Q Consensus 456 g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 490 (535)
...| ...++..+...+...|++++|.+++++.++.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 2346777888999999999999999988764
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=7e-09 Score=96.30 Aligned_cols=209 Identities=10% Similarity=0.023 Sum_probs=146.6
Q ss_pred CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----cCCC-cchHHHHHHHHHhcCCHHH
Q 009424 261 STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRI----TGRD-RVPYHYLLSLYGSVGKKEE 335 (535)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~-~~~~~~li~~~~~~g~~~~ 335 (535)
++++|...|... ...|...|++++|...|++..+.. -.++ ..+|+.+...|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 477777777766 335777899999998888775431 1111 4578888888999999999
Q ss_pred HHHHHHHHHhhCCCC---c--hhhHHHHHHHHHhc-CCHhhHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHHcCChh
Q 009424 336 VYRVWNLYRSVFPGV---T--NLGYHAMISSLARI-GDIEGMEKIFEEWLSVKSSY-D----PRIANLMMSWYVKEGNFD 404 (535)
Q Consensus 336 a~~~~~~m~~~~~~~---~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~ 404 (535)
|+..|++.....+.. . ..++..+...|... |++++|...+++..+..... + ..++..+...|.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 999998876632221 1 24677888888885 99999999999887643221 1 356788899999999999
Q ss_pred HHHHHHHHHHHcCCCCCHh------HHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHH------HHHHHHHHHH
Q 009424 405 KAEAFFNSIIEEGGKPNST------SWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPV------NVINFFKACE 472 (535)
Q Consensus 405 ~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~------~~~~ll~a~~ 472 (535)
+|...|++..+........ .|..+...+...|++++|+..|++.. .+.|+.. .+..++.++.
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ------SEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG------CC---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999998854432221 56777888889999999999999998 3455432 3444555554
Q ss_pred --hcCChhhHHHHHHHHhcCC
Q 009424 473 --EESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 473 --~~g~~~~a~~~~~~~~~~~ 491 (535)
..+++++|...++.+.+..
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCC
T ss_pred cCCHHHHHHHHHHhccCCccH
Confidence 3455777777766655543
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=2.4e-07 Score=84.63 Aligned_cols=189 Identities=11% Similarity=0.011 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-chhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 301 AEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-TNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 301 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
|...|++....+ .++..++..+..++...|++++|++++.+....++.+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666655443 3444455566677777777777777777765544322 22556677777777777777777777776
Q ss_pred hcCCCC-----CHHHHHHHHHH--HHHcC--ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHH
Q 009424 380 SVKSSY-----DPRIANLMMSW--YVKEG--NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 380 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (535)
+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 23 23444444444 22234 788888888887654 23433334444477788888888888876662
Q ss_pred hccCC-C---CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 451 AEGAK-S---WRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 451 ~~~~~-g---~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
..++. . ..| |..++..++......|+ ++.++++++.+..|..+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 10000 0 124 34455566666666676 778888888877776554
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=2.4e-08 Score=80.10 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
.|..+...+.+.|++++|..+|+++.+.+ +.+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45555566666666666666666665542 2244555556666666666666666666665543 224445555555566
Q ss_pred cCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 258 SQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVES 310 (535)
Q Consensus 258 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (535)
..|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666555421 33445555555555556666666655555543
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=1.6e-08 Score=93.83 Aligned_cols=193 Identities=11% Similarity=-0.010 Sum_probs=121.8
Q ss_pred HHhcCCCHhHHHHHHHHhHhC---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-C----cchHHHHHH
Q 009424 255 SCGSQGSTEKMEGVFELMKVD---KAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-D----RVPYHYLLS 325 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~ 325 (535)
.|...|++++|...|.+..+- .+-+++ ..+|+.+...|.+.|++++|...|++..+..... + ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666554421 111111 3456666666777777777776666654421111 1 235667777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhCCCCc-----hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH------HHHHHH
Q 009424 326 LYGSV-GKKEEVYRVWNLYRSVFPGVT-----NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP------RIANLM 393 (535)
Q Consensus 326 ~~~~~-g~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l 393 (535)
.|... |++++|+..|++.....+..+ ..++..+...+...|++++|...+++..+..+.... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 888888888887766432211 245777888888889999999999888876544322 156677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC------HhHHHHHHHHHH--ccccHHHHHHHHHHhH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPN------STSWETLAEGHI--RERRILEALSCLKGAF 449 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 449 (535)
..++...|++++|...|++..+. .|+ ...+..++.+|. ..+++++|++.|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 78888899999999999887653 222 113444556664 4567899999998777
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=5.3e-07 Score=89.82 Aligned_cols=343 Identities=10% Similarity=-0.009 Sum_probs=203.9
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCC-HhhHHHHHhhCCC----CCCCHHHHHHHHHHHH----HcC
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHG-VASAEDFFLSLPD----TLKDRRVYGALLNAYV----RAR 190 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~~----~~~~~~~~~~li~~~~----~~g 190 (535)
++++.+.++|+..++.- |+...+...+....+.++ .+..+.+|+.... ...+...|...+..+. ..+
T Consensus 28 ~~~e~~~~iferal~~~----ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS----YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 66777777777777643 366666666666655553 3445555554332 1245567777766543 345
Q ss_pred CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHH-------------hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYM-------------KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
+.+.+.++|++.......--...|......-. ..+.+..|..+++.+...--..+...|...+.--.
T Consensus 104 ~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 67777777777766311000111221111100 01123334444444432100013345555554432
Q ss_pred cC--CC-----HhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc
Q 009424 258 SQ--GS-----TEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV 330 (535)
Q Consensus 258 ~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (535)
.. |- .+.+..+|+++... ++.+...|...+..+.+.|+.+.|..+|++.... +.+...|. .|+..
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLV 255 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHH
T ss_pred cCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhh
Confidence 21 11 34567889988863 4667888998899899999999999999999876 23333333 23322
Q ss_pred CCHHHHHHHHHHHHhhCC------------CCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 009424 331 GKKEEVYRVWNLYRSVFP------------GVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYV 398 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 398 (535)
.+.++. ++.+..... ......|...+..+.+.+.++.|+.+|+.+ +.. ..+..+|......-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 221221 333322110 011245666777777788899999999998 322 234555544333333
Q ss_pred HcC-ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCCh
Q 009424 399 KEG-NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDM 477 (535)
Q Consensus 399 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~ 477 (535)
+.+ +.+.|..+|+...+.-.. +...|...++.....|+.+.|..+|+.+. . ....|...+..=...|+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~----k-----~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE----K-----TSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC----C-----BHHHHHHHHHHHHHHSCH
T ss_pred HHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----H-----HHHHHHHHHHHHHHCCCH
Confidence 334 699999999999875332 45567777888888999999999999875 2 466788888777788999
Q ss_pred hhHHHHHHHHhc
Q 009424 478 GSKEAFVALLRQ 489 (535)
Q Consensus 478 ~~a~~~~~~~~~ 489 (535)
+.+..++++..+
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888763
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=2.5e-08 Score=80.00 Aligned_cols=123 Identities=15% Similarity=0.259 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF 403 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 403 (535)
...+...|++++|+.+|+++....+. +...+..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhcCH
Confidence 33333444444444444443332221 1223333444444444444444444444433221 333444444444555555
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 404 DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 404 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
++|.+.++++.+.... +...|..+...+.+.|++++|.+.++++.
T Consensus 86 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 86 DEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5555555544443221 34444445555555555555555555544
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=4.5e-08 Score=89.14 Aligned_cols=184 Identities=9% Similarity=0.008 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC-cch
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIKMGQVEKAEESLRRVESRITG-RD-RVP 319 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~ 319 (535)
+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+..+. |. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34445555556666666666666666666432 222 455666666666666666666666666553221 11 223
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH
Q 009424 320 YHYLLSLYGS--------VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN 391 (535)
Q Consensus 320 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 391 (535)
+..+..++.. .|++++|+..|+++....+.... ........ ......+ ...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~-------~~~~~~~-----------~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-VDDATQKI-------RELRAKL-----------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-HHHHHHHH-------HHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-HHHHHHHH-------HHHHHHH-----------HHHHH
Confidence 4444555555 66666666666666554433211 11111000 0000000 11134
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHcc----------ccHHHHHHHHHHhH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIEEGGKP--NSTSWETLAEGHIRE----------RRILEALSCLKGAF 449 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~ 449 (535)
.+...|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|++.|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 55667777888888888888777643321 234566666666654 77777777777777
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=3.8e-07 Score=83.29 Aligned_cols=78 Identities=5% Similarity=-0.029 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 195 AELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI-RLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 195 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
|+..|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444333 23333334444555555555555555554443331 1133344444555555555555555555554
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=7.4e-08 Score=87.67 Aligned_cols=210 Identities=9% Similarity=-0.028 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--hh
Q 009424 279 NPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LG 354 (535)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~ 354 (535)
+.+...+-.+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|++.....+..+. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566677777778888888888888888876432211 346667777888888888888888888776553222 34
Q ss_pred HHHHHHHHHh--------cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHH
Q 009424 355 YHAMISSLAR--------IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWE 426 (535)
Q Consensus 355 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 426 (535)
+..+..++.. .|++++|...|+++++..+. +......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5566666666 77778888887777765433 2222222111 1111110 112245
Q ss_pred HHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC----HHHHHHHHHHHHhc----------CChhhHHHHHHHHhcCCC
Q 009424 427 TLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----PVNVINFFKACEEE----------SDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~ 492 (535)
.+...|.+.|++++|+..|+++.+ ..|+ ...+..+..++... |++++|...++++++..+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFD------AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH------HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH------HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 677889999999999999999983 3344 34566666777765 889999999999999887
Q ss_pred CChh---hHHHHHHHhHhhhhccc
Q 009424 493 RKEK---DYMSLIGLTDEAVAENN 513 (535)
Q Consensus 493 ~~~~---~~~~L~~~y~~~~~~~~ 513 (535)
.... .+..|...+.+.++.++
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhhh
Confidence 7643 45666666655555433
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=8e-08 Score=84.12 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=32.9
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
+..++.+.|++++|...+++.++..+. +...+..+..+|...|++++|...|++..+..+. +...|..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 344444444444444444444443322 3444444444444444444444444444443222 3444444444443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=7e-08 Score=100.64 Aligned_cols=191 Identities=11% Similarity=-0.038 Sum_probs=148.8
Q ss_pred HhcCCHHHHHHHHHHHH--------hcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 293 IKMGQVEKAEESLRRVE--------SRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 293 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
...|++++|.+.|++.. +. ...+...|..+...|.+.|++++|+..|++..+..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999987 32 1234567888889999999999999999999886554 34678888889999
Q ss_pred cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSC 444 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 444 (535)
.|++++|.+.|+++.+..+. +...|..+..+|.+.|++++ .+.|++..+.+.. +...|..+...|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887755 67888899999999999999 9999999886554 778899999999999999999999
Q ss_pred HHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCC-----hhhHHHHHHHHhcCCCCC
Q 009424 445 LKGAFAAEGAKSWRPKP-VNVINFFKACEEESD-----MGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 445 ~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~~~~ 494 (535)
|+++. .+.|+. ..+..+..++...++ .+...+..+.+.+....+
T Consensus 557 ~~~al------~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 606 (681)
T 2pzi_A 557 LDEVP------PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTE 606 (681)
T ss_dssp HHTSC------TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTS
T ss_pred HHhhc------ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCc
Confidence 99988 566765 456666666655454 344444555555544333
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=4.6e-08 Score=85.66 Aligned_cols=174 Identities=12% Similarity=0.086 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCC-CcchHHH----------------HHHHHHhcCCHHHHHHHHHHHH
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGR-DRVPYHY----------------LLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~ 344 (535)
...+-.....+.+.|++++|...|++..+. .| +...|.. +...|.+.|++++|+..|++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445566788999999999999998774 34 3446666 8889999999999999999999
Q ss_pred hhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCH
Q 009424 345 SVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN--FDKAEAFFNSIIEEGGKPNS 422 (535)
Q Consensus 345 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 422 (535)
...|. +...+..+...+...|++++|...|+++++..+. +...+..+...|...|+ .+.+...++.... ..|..
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 97655 4467889999999999999999999999987765 78888888888876654 3445555655532 22223
Q ss_pred hHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHH
Q 009424 423 TSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINF 467 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~l 467 (535)
..+.....++...|++++|+..|+++. .+.|+......+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al------~l~P~~~~~~~l 196 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVI------LRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHT------TTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH------HhCCCHHHHHHH
Confidence 344445666777899999999999999 577886654443
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=3.7e-08 Score=92.10 Aligned_cols=162 Identities=9% Similarity=0.080 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCc--hhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-----CHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFP---GVT--NLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY-----DPR 388 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~ 388 (535)
+|+.+...|.+.|++++|+..|++...... .+. ..++..+...|.. |++++|...+++..+..... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 444455555556666666666655443211 111 1345566666666 77777777777765432111 135
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEG----GKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVN 463 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~ 463 (535)
++..+...|.+.|++++|+..|++..+.. ..+. ...+..+...+...|++++|+..|++.. ..+...-......
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 67777888888888888888888876521 1111 2255566666777789999999988877 3222211111223
Q ss_pred HHHHHHHHHhcCChhhHHHH
Q 009424 464 VINFFKACEEESDMGSKEAF 483 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~ 483 (535)
...++.++ ..|+.+...++
T Consensus 236 l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHH
Confidence 44555555 56776666553
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=9.5e-08 Score=99.66 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=148.9
Q ss_pred hcCCCHhHHHHHHHHhH--------hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 257 GSQGSTEKMEGVFELMK--------VDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
...|++++|.+.+++.. +. -+.+...+..+...|.+.|++++|...|++..+... .+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence 78899999999999987 32 255677899999999999999999999999987543 35668888999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEA 408 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 408 (535)
..|++++|+..|++..+..+.. ...+..+..++.+.|++++ .+.|+++.+..+. +...|..+..+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGE-LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999876553 3678889999999999999 9999999887765 78899999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcccc--------HHHHHHHHHHh
Q 009424 409 FFNSIIEEGGKPNSTSWETLAEGHIRERR--------ILEALSCLKGA 448 (535)
Q Consensus 409 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m 448 (535)
.|++..+.+.. +...|..+..++...++ +++|.+.+..+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99988775332 46677777777766444 45555544443
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=2.3e-07 Score=82.30 Aligned_cols=191 Identities=8% Similarity=-0.031 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh--hHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNL--GYH 356 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~ 356 (535)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|+++.+..|..... .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445566677788999999999999999987533211 2467778889999999999999999998876664432 344
Q ss_pred HHHHHHHh------------------cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 357 AMISSLAR------------------IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 357 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
.+..++.. .|+.++|...|+.+++..+. +...+.+..... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 44444443 34556666666665544322 222221111000 000000
Q ss_pred CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 419 KPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKP----VNVINFFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
......+...|.+.|++++|+..|+++.+ ..|+. ..+..+..++.+.|++++|.+.++.+...++..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLR------DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHH------HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113456778899999999999999993 34543 467778889999999999999999999887765
Q ss_pred hh
Q 009424 495 EK 496 (535)
Q Consensus 495 ~~ 496 (535)
..
T Consensus 218 ~~ 219 (225)
T 2yhc_A 218 LE 219 (225)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=3.5e-06 Score=77.68 Aligned_cols=223 Identities=8% Similarity=0.032 Sum_probs=151.2
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcC-
Q 009424 187 VRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK--EYDEVESMVSEMKEKGIRLDVYSYNIWLSSC----GSQ- 259 (535)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~----~~~- 259 (535)
.+....++|+++++.+...+ +-+...|+.--..+...| ++++++++++.+.....+ +..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33444568888888888764 334556777777777777 888888888888877532 445555443333 344
Q ss_pred --CCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC---
Q 009424 260 --GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE--KAEESLRRVESRITGRDRVPYHYLLSLYGSVGK--- 332 (535)
Q Consensus 260 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 332 (535)
+++++++.+++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+..+ .|-..|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred ccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 67888888888888643 667888888877788888877 88888888876543 466677766666666665
Q ss_pred ---HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH-hhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCChhHH
Q 009424 333 ---KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI-EGMEKIFEEWLSVK--SSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 333 ---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
++++++.++++....+. +...|+-.-..+.+.|+. +.+..+...+.+.+ -..++..+..+.+.|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 77777777777776444 445666666666666663 33445555554433 122566777777777777777777
Q ss_pred HHHHHHHHH
Q 009424 407 EAFFNSIIE 415 (535)
Q Consensus 407 ~~~~~~m~~ 415 (535)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777765
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=4.1e-07 Score=80.68 Aligned_cols=186 Identities=8% Similarity=0.003 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc--hHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN-WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV--PYH 321 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~ 321 (535)
+...+..+...+.+.|++++|...|+.+.+.....+. ...+..+..+|.+.|++++|...|+++.+..+..... .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677889999999999999999864221221 3578888999999999999999999998754332211 344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCC
Q 009424 322 YLLSLYGS------------------VGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKS 383 (535)
Q Consensus 322 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 383 (535)
.+..++.. .|+.++|+..|+++....|.... .+.... +.+ .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~-a~~a~~----~l~------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY-TTDATK----RLV------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT-HHHHHH----HHH------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh-HHHHHH----HHH------HHHHHH-----
Confidence 44444443 57899999999999986555332 221111 100 011111
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 384 SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN--STSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 384 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|.+.++.+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 01123456778889999999999999987533211 2567888899999999999999999888
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=5.2e-08 Score=82.77 Aligned_cols=78 Identities=13% Similarity=0.026 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP-NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|...++...+..+. +...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45555555544333 45555555666666666666666666655543322 23455555566666666666666655544
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=9.4e-08 Score=81.17 Aligned_cols=159 Identities=11% Similarity=-0.064 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW-YV 398 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 398 (535)
+......+.+.|++++|+..|++.....+. +...+..+...+...|++++|...++.+.+..+ ++..+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 444555666677777777777766554333 234566666777777777777777776655433 44333222211 12
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC---HHHHHHHHHHHHhcC
Q 009424 399 KEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK---PVNVINFFKACEEES 475 (535)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~---~~~~~~ll~a~~~~g 475 (535)
..+...+|...|++..+..+. +...+..+...+...|++++|++.|+++. ...|+ ...+..+...+...|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l------~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNIL------KVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------TTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHH------HhCcccChHHHHHHHHHHHHHhC
Confidence 223344578888888876444 68889999999999999999999999999 34554 457888889999999
Q ss_pred ChhhHHHHHHHHh
Q 009424 476 DMGSKEAFVALLR 488 (535)
Q Consensus 476 ~~~~a~~~~~~~~ 488 (535)
+.++|...+++.+
T Consensus 159 ~~~~A~~~y~~al 171 (176)
T 2r5s_A 159 QGNAIASKYRRQL 171 (176)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999988765
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=1.3e-08 Score=83.90 Aligned_cols=135 Identities=12% Similarity=0.082 Sum_probs=79.5
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
..|++++|...+.......+. +...+..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHH
Confidence 445566666666655433211 2344455666666666666666666666665443 56666666666667777777777
Q ss_pred HHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHH-HHHHhcCCCCChhhHHHHHHHhH
Q 009424 444 CLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAF-VALLRQPGYRKEKDYMSLIGLTD 506 (535)
Q Consensus 444 ~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~L~~~y~ 506 (535)
.|+++. .+.|+ ...|..+...+.+.|+++++.+. +++.++..|.....|......+.
T Consensus 87 ~~~~al------~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 87 CYRRSV------ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHH------HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 776666 23443 44555666666666666554443 46666666665556665555553
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=1.2e-07 Score=88.63 Aligned_cols=182 Identities=8% Similarity=-0.038 Sum_probs=127.4
Q ss_pred cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCc--hhhHHHHHHHHHhcCCHh
Q 009424 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFP---GVT--NLGYHAMISSLARIGDIE 369 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~g~~~ 369 (535)
.+++++|...|.+. ...|...|++++|...|.+...... .+. ..+|..+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35666666666553 2345566777777777766544211 111 246778888999999999
Q ss_pred hHHHHHHHHHhcCCC---C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-C----HhHHHHHHHHHHccccHH
Q 009424 370 GMEKIFEEWLSVKSS---Y--DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP-N----STSWETLAEGHIRERRIL 439 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~ 439 (535)
+|...+++..+.-.. + -..++..+...|.. |++++|+..|++..+..... + ..++..+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 999999987654211 1 13567788888988 99999999999887531111 1 467888899999999999
Q ss_pred HHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 440 EALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+|++.|+++.+..+..+..+.. ..+..+...+...|++++|...+++.+ ..+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 9999999998433223322222 255666667778899999999999999 6554
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=2.8e-07 Score=85.13 Aligned_cols=166 Identities=8% Similarity=-0.058 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
+...+..+...+.+.|++++|...|++..+..+ -+...+..+...+.+.|++++|+..++++....+.+ .........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHHHH
Confidence 334444555555566666666666665544321 133345555556666666666666666554433311 112222222
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHccccHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP-NSTSWETLAEGHIRERRIL 439 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~ 439 (535)
.+...++.+.|...+++.....+. +...+..+...|...|++++|...|+++.+..+.. +...+..+...|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 344455555566666665555433 55566666666666666666666666666543221 1445666666666666666
Q ss_pred HHHHHHHHhH
Q 009424 440 EALSCLKGAF 449 (535)
Q Consensus 440 ~A~~~~~~m~ 449 (535)
+|...|++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665544
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=6e-08 Score=79.91 Aligned_cols=141 Identities=8% Similarity=0.002 Sum_probs=71.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhH
Q 009424 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGM 371 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 371 (535)
+...|++++|+..++....... -+...+-.+...|.+.|++++|++.|++..+..+. +...|..+...+...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 3344555555555555432211 12233444555555556666666666555554333 234555555666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAF-FNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
...|+..++..+. +...+..+...|.+.|+.++|.+. +++..+..+. +...|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666665554433 455556666666666665554443 3555554332 4445554444444444
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.78 E-value=2.8e-07 Score=85.15 Aligned_cols=164 Identities=10% Similarity=-0.055 Sum_probs=130.2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHH-HH
Q 009424 315 RDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIAN-LM 393 (535)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l 393 (535)
.+...+..+...+.+.|++++|+..|++.....+.- ...+..+...+...|++++|...++.+....+ +..... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHH
Confidence 344566777788899999999999999998876553 35678888999999999999999998866543 443332 33
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC---HHHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK---PVNVINFFKA 470 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~---~~~~~~ll~a 470 (535)
...+...++.++|...+++..+..+. +...+..+...|...|++++|++.|+++.+ ..|+ ...+..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~------~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLR------XDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTGGGGHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh------cccccccchHHHHHHHH
Confidence 33466778888899999998886554 788899999999999999999999999993 3454 4578888899
Q ss_pred HHhcCChhhHHHHHHHHh
Q 009424 471 CEEESDMGSKEAFVALLR 488 (535)
Q Consensus 471 ~~~~g~~~~a~~~~~~~~ 488 (535)
+...|+.++|...+++.+
T Consensus 265 ~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 265 LAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHH
Confidence 999999999988887654
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=5.4e-06 Score=76.39 Aligned_cols=227 Identities=7% Similarity=0.007 Sum_probs=119.8
Q ss_pred HHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcccCCCcchHHHHHHHH----Hhc---CCHH
Q 009424 264 KMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG--QVEKAEESLRRVESRITGRDRVPYHYLLSLY----GSV---GKKE 334 (535)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 334 (535)
+|+++++.+..-. +-+..+|+.--..+...| +++++++.++.+....+ .+..+|+.--..+ ... ++++
T Consensus 51 ~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 51 RALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4444444444321 223334444444444444 55555555555544322 1333444332222 222 4555
Q ss_pred HHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHh--hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC------hhHH
Q 009424 335 EVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIE--GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN------FDKA 406 (535)
Q Consensus 335 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A 406 (535)
+++.+++.+....++ +...|+.-.-.+.+.|.++ ++.+.++.+++..+. |...|+.-...+.+.|+ ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 666666666554333 2344444444455555555 666666666665544 55556555555555554 6677
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH-HHHHHHHhHHhccCCC--CCCCHHHHHHHHHHHHhcCChhhHHHH
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE-ALSCLKGAFAAEGAKS--WRPKPVNVINFFKACEEESDMGSKEAF 483 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~g--~~p~~~~~~~ll~a~~~~g~~~~a~~~ 483 (535)
++.++++....+. |...|+.+-..+.+.|+..+ +.++..+.. ..+ -..+...+..+...+.+.|+.++|.++
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFV----DLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTE----EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHH----hccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 7777777766555 67777776666666665433 444555555 211 123455666666677777777777777
Q ss_pred HHHHhc-CCCCChhhHHH
Q 009424 484 VALLRQ-PGYRKEKDYMS 500 (535)
Q Consensus 484 ~~~~~~-~~~~~~~~~~~ 500 (535)
++.+.+ .++.....|..
T Consensus 281 ~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHhccChHHHHHHHH
Confidence 777764 45443334443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=1.3e-07 Score=96.67 Aligned_cols=151 Identities=12% Similarity=-0.001 Sum_probs=100.1
Q ss_pred cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHH
Q 009424 295 MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKI 374 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 374 (535)
.|++++|...|++..+... .+...|..+...|.+.|++++|++.|++..+..+. +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4677888888887765321 24557777778888888888888888888775443 335677777888888888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc---ccHHHHHHHHHHhH
Q 009424 375 FEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE---RRILEALSCLKGAF 449 (535)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 449 (535)
+++..+.... +...+..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8887776544 5677778888888888888888888887775443 567777778888887 88888888888887
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=7.4e-07 Score=78.12 Aligned_cols=176 Identities=8% Similarity=-0.035 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----CHhHHHHHH
Q 009424 194 NAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG----STEKMEGVF 269 (535)
Q Consensus 194 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g----~~~~a~~~~ 269 (535)
+|++.|++..+.| +..++..+...|...+++++|++.|++..+.| +...+..|-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666655 55666666666666666666666666666654 44555555555555 4 666666666
Q ss_pred HHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccC-CCcchHHHHHHHHHh----cCCHHHHHHHH
Q 009424 270 ELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESRITG-RDRVPYHYLLSLYGS----VGKKEEVYRVW 340 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~a~~~~ 340 (535)
+...+ .-+...+..|...|.. .+++++|...|++..+.|.. .+...+..|-..|.. .++.++|+..|
T Consensus 77 ~~A~~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVE----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHH----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHH----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66654 2245555556555555 55666666666665543321 013444555555555 45555555555
Q ss_pred HHHHhhCCCCchhhHHHHHHHHHhc-C-----CHhhHHHHHHHHHhcC
Q 009424 341 NLYRSVFPGVTNLGYHAMISSLARI-G-----DIEGMEKIFEEWLSVK 382 (535)
Q Consensus 341 ~~m~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 382 (535)
++....+.. ...+..+...|... | +.++|...++...+.|
T Consensus 153 ~~A~~~~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLSRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTSCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 555443111 12333444444322 1 4555555555555444
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=7e-06 Score=81.70 Aligned_cols=345 Identities=11% Similarity=0.004 Sum_probs=214.8
Q ss_pred CCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccC-hHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHH----hhCC
Q 009424 84 DNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRR-YKHALEVYDWMNNRGERFRLSASDAAIQLDLIA----KVHG 158 (535)
Q Consensus 84 g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~----~~g~ 158 (535)
|+.+ .+..+|++.+. ..|+...|..-++-..+.++ .+....+|+.++..-.....+...+...+..+. ..++
T Consensus 28 ~~~e-~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYR-SLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHH-HHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHH-HHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6677 88888888877 45788888888777776653 345677788777642111234555655555543 3467
Q ss_pred HhhHHHHHhhCCCCCCC--HHHHHHHHHHHH-------------HcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 159 VASAEDFFLSLPDTLKD--RRVYGALLNAYV-------------RARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 159 ~~~A~~~f~~~~~~~~~--~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
++.++++|++....+.. ...|......-. ..+.+..|+.+++++...--..+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88888898887654211 123332222111 112333455555544431000123456665554332
Q ss_pred cC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcC
Q 009424 224 IK--E-----YDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMG 296 (535)
Q Consensus 224 ~g--~-----~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 296 (535)
.+ - .+.+..+|++++... +.+...|...+.-+...|+.+.|..+++..... +.+...|.. |+...
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~ 256 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVM 256 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhc
Confidence 21 1 345678899988763 456778888888888999999999999999963 444444432 33322
Q ss_pred CHHHHHHHHHHHHhcc---------c---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 297 QVEKAEESLRRVESRI---------T---GRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
..++. ++.+.+.- . ......|...+..+.+.+..+.|..+|++. .. +......|......-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH
Confidence 22222 33332210 0 011245777777777788899999999999 32 22333334322222222
Q ss_pred -cCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHH
Q 009424 365 -IGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALS 443 (535)
Q Consensus 365 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 443 (535)
.++.+.|..+|+...+.-.. ++..+...++...+.|+.+.|..+|++.. .....|...+..=...|+.+.+.+
T Consensus 332 ~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 33699999999999876433 46667778888899999999999999973 267788888887788899999999
Q ss_pred HHHHhHH
Q 009424 444 CLKGAFA 450 (535)
Q Consensus 444 ~~~~m~~ 450 (535)
+++++..
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8988873
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=1.9e-06 Score=75.53 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHHHH
Q 009424 174 KDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK----EYDEVESMVSEMKEKGIRLDVYSY 249 (535)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~pd~~~~ 249 (535)
.+..++..|-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|+++|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 367778888888888889999999998888877 67777778777777 6 8889999998888776 56777
Q ss_pred HHHHHHHhc----CCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccCCCcc
Q 009424 250 NIWLSSCGS----QGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIK----MGQVEKAEESLRRVESRITGRDRV 318 (535)
Q Consensus 250 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~ 318 (535)
..|-..|.. .+++++|...|++..+. .++ ...+..|..+|.. .++.++|...|++..+. ..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~ 163 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGY 163 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHH
Confidence 777777776 78899999999988853 232 6788888888888 78899999999988764 23455
Q ss_pred hHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCC
Q 009424 319 PYHYLLSLYGSV-G-----KKEEVYRVWNLYRSVFP 348 (535)
Q Consensus 319 ~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~~ 348 (535)
.+..+-..|... | +.++|+..|+...+.|.
T Consensus 164 a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 164 AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666677777653 3 78999999988877653
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=5.6e-07 Score=92.01 Aligned_cols=150 Identities=7% Similarity=-0.102 Sum_probs=62.8
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELL 198 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 198 (535)
|++++|.+.++...+.. +.+...+..+...|...|++++|.+.|++..+. +.+...|..+...|.+.|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555555443 233444444555555555555555555544433 22344455555555555555555555
Q ss_pred HHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC---CCHhHHHHHHHHhHh
Q 009424 199 IDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQ---GSTEKMEGVFELMKV 274 (535)
Q Consensus 199 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 274 (535)
|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 55544432 2233444445555555555555555555544442 12344444444445444 555555555555443
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=2.2e-06 Score=74.94 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.+...+...|++++|...+++.. .|+...+..+...|.+.|++++|...|++..+.... +...|..+...|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444445555555555555432 334555555555555555555555555555554322 4455555555555556
Q ss_pred cHHHHHHHHHHhHHhccCCC----------CCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 437 RILEALSCLKGAFAAEGAKS----------WRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g----------~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
++++|++.|+++.+..+... ..|+. ..+..+..++...|++++|.+.+++..+..+...
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 66666665555552211111 11211 3444555555566666666666666665555443
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=6e-06 Score=76.38 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHh----c-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-Hh
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLS----V-KSSY-DPRIANLMMSWYVKEGNFDKAEAFFNSIIEE----GGKPN-ST 423 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~ 423 (535)
++.+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 44455555555555555555554442 1 1111 1234555666666666666666666555431 11111 45
Q ss_pred HHHHHHHHHHcccc-HHHHHHHHHHhH
Q 009424 424 SWETLAEGHIRERR-ILEALSCLKGAF 449 (535)
Q Consensus 424 ~~~~li~~~~~~g~-~~~A~~~~~~m~ 449 (535)
+|..+...|.+.|+ +++|.+.++++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56666666666663 466666666665
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=8.4e-06 Score=75.39 Aligned_cols=167 Identities=11% Similarity=-0.038 Sum_probs=123.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch-h----hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CC----HHHHHH
Q 009424 323 LLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-L----GYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YD----PRIANL 392 (535)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 392 (535)
.+..+...|++++|..++++........+. . .+..+...+...+++++|...++.+.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677888888888888888774333222 1 2334666667778999999999998874332 22 336899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH----c-CCCCC-HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHH
Q 009424 393 MMSWYVKEGNFDKAEAFFNSIIE----E-GGKPN-STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVI 465 (535)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~ 465 (535)
+...|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|++.++++.+..+..+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999874 1 11112 347888899999999999999999999854434444443 45777
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHhc
Q 009424 466 NFFKACEEESD-MGSKEAFVALLRQ 489 (535)
Q Consensus 466 ~ll~a~~~~g~-~~~a~~~~~~~~~ 489 (535)
.+..++...|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999994 6999999988764
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=6.2e-07 Score=73.54 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+..+...+.+.|++++|...|+.+.+..+. +...|..+..+|.+.|++++|...|++..+..+. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 4445555566666666666666666555443 5556666666666666666666666666654433 4555666666666
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
+.|++++|++.|+++.
T Consensus 116 ~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 116 RLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666666
No 121
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=3.2e-05 Score=71.73 Aligned_cols=197 Identities=7% Similarity=-0.088 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC-HhhHHHH
Q 009424 298 VEKAEESLRRVESRITGRDRVPYHYLLSLYGSVG--KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD-IEGMEKI 374 (535)
Q Consensus 298 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~ 374 (535)
+++++.+++.+....+ .+..+|+.-.-.+.+.+ .+++++.+++.+....+. +...|+.-.-.+...|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4455555555554322 24445555444444445 356666666666654433 33445444444555555 4666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-----
Q 009424 375 FEEWLSVKSSYDPRIANLMMSWYVKE--------------GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE----- 435 (535)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 435 (535)
+..+++..+. |...|+.....+.+. +.++++++.++......+. |...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 6666665554 556665554444443 4467888888888876555 777777665555544
Q ss_pred ------ccHHHHHHHHHHhHHhccCCCCCCCHHHHHH--HH---HHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 436 ------RRILEALSCLKGAFAAEGAKSWRPKPVNVIN--FF---KACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 436 ------g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~--ll---~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
+.++++++.++++. .+.||. .|.. ++ .+....|..++....++++++.+|....-|..|...
T Consensus 246 ~~~~~~~~l~~el~~~~ell------e~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQ------ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHH------HHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH------hhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 56899999999999 355665 3332 21 222245778899999999998888777778777665
Q ss_pred h
Q 009424 505 T 505 (535)
Q Consensus 505 y 505 (535)
+
T Consensus 319 ~ 319 (331)
T 3dss_A 319 F 319 (331)
T ss_dssp H
T ss_pred H
Confidence 5
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=9.2e-07 Score=70.18 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+......+.+.|++++|.+.|++.++..+. +...|..+..+|.+.|++++|+..|++..+.+.. +...|..+...|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 333444444444444444444444443322 3444444444444444444444444444443222 34444444444444
Q ss_pred cccHHHHHHHHHHhH
Q 009424 435 ERRILEALSCLKGAF 449 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~ 449 (535)
.|++++|++.|+++.
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444444444
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=5.1e-06 Score=69.12 Aligned_cols=127 Identities=7% Similarity=-0.025 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVK 399 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 399 (535)
|..+...+...|++++|+..|++.....+. +...+..+...+...|++++|...+++..+..+. +...+..+...|.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 444445555556666666666655554332 2345555666666666666666666666655432 55666677777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHH--HHHHccccHHHHHHHHHHhH
Q 009424 400 EGNFDKAEAFFNSIIEEGGKPNSTSWETLA--EGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 449 (535)
.|++++|...|++..+.... +...+..+. ..+...|++++|++.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777665333 444443333 33566777777777777665
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=5.3e-06 Score=72.50 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCC------------
Q 009424 210 HSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKA------------ 277 (535)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------ 277 (535)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...|+...+...
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 33344444444444444444444444444332 12333444444444444444444444444433110
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 278 -VNP-NWTTFSTMATMYIKMGQVEKAEESLRRVES 310 (535)
Q Consensus 278 -~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (535)
..| ....+..+...|.+.|++++|...|+...+
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 011 124566666666677777777777766655
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=2e-06 Score=68.23 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ 466 (535)
..+......|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|++.|+++.+ +.| +...|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~a~~~ 86 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR------LDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH------hhhhhhHHHHH
Confidence 45667788999999999999999999987554 789999999999999999999999999993 445 4568888
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
+..++...|++++|.+.|++.++..|.....+..|.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 88999999999999999999999998887777666554
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.53 E-value=4.9e-05 Score=70.81 Aligned_cols=231 Identities=9% Similarity=0.039 Sum_probs=142.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIK-EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCG 257 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~ 257 (535)
++.+-....+.+..++|+++++++...+ +-+..+|+.--..+...| .+++++++++.+..... -+..+|+.--..+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3444444445556678888888888764 334556777777777777 58888888888887753 36667776655555
Q ss_pred cC-C-CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcccCCCcchHHHHHHHH
Q 009424 258 SQ-G-STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVE--------KAEESLRRVESRITGRDRVPYHYLLSLY 327 (535)
Q Consensus 258 ~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (535)
+. + ++++++++++.+.+.. +.|..+|+.-...+.+.|.++ ++++.++++.+..+ .|...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 55 5 7788888888888532 567778877666666655555 78888887776543 3666777766666
Q ss_pred HhcCC-------HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCH--------------------hhHHHHHHHHHh
Q 009424 328 GSVGK-------KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDI--------------------EGMEKIFEEWLS 380 (535)
Q Consensus 328 ~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~ 380 (535)
.+.+. ++++++.+++.....+. |...|+-+-..+.+.|.. .........+..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 66665 57777777777765444 445555555555544432 112222222211
Q ss_pred cC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 381 VK-----SSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 381 ~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.+ ..+++.....+++.|...|+.++|.++++.+.+
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11 023555666666677766777777777776654
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=2.3e-06 Score=67.11 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINF 467 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~l 467 (535)
..+..+...+...|++++|.+.|+++.+.... +...|..+...+...|++++|+.+++++.+ .. ..+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~l 83 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LD-PNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hC-CccHHHHHHH
Confidence 44455555555555555555555555543221 445555555555556666666666665552 11 1234455555
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
...+...|++++|...++++.+..+.....+..+...+
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55555666666666666665555544444444444444
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=6e-07 Score=73.64 Aligned_cols=103 Identities=14% Similarity=-0.024 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNV 464 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~ 464 (535)
+...+..+...+.+.|++++|...|++..+..+. +...|..+...|...|++++|++.|+++. .+.|+ ...|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al------~l~P~~~~~~ 107 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAF------ALGKNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHH------hhCCCCcHHH
Confidence 4557778888999999999999999999987655 78999999999999999999999999999 34554 5688
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 465 INFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 465 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
..+-.++...|++++|.+.|++.++..+.++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888999999999999999999998876654
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=1.7e-05 Score=73.23 Aligned_cols=166 Identities=11% Similarity=-0.054 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCc-----chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---c--hh
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDR-----VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV---T--NL 353 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~--~~ 353 (535)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|+..+++........ . ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666677777777776665543211110 112233444555666666666666655422111 1 13
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHh---cCCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCC-CH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLS---VKSS-Y--DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEG----GKP-NS 422 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 422 (535)
+++.+...|...|++++|...++++.+ .... + ...++..+...|.+.|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 555666666666666666666666552 1111 0 11455666666666666666666666654321 000 14
Q ss_pred hHHHHHHHHHHccccHHHH-HHHHHHhH
Q 009424 423 TSWETLAEGHIRERRILEA-LSCLKGAF 449 (535)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 449 (535)
.+|..+...|.+.|++++| ...++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4556666666666666666 55566555
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=8.2e-06 Score=75.47 Aligned_cols=171 Identities=11% Similarity=-0.032 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC---CC--HH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-----LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS---YD--PR 388 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 388 (535)
.+...+..+...|++++|++.+.+........+. ..+..+...+...|++++|...+....+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677888999999999999988775443221 22344566677889999999999998754322 12 45
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCC-----HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-H
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEE-GGKPN-----STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-P 461 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~ 461 (535)
+++.+...|...|++++|...|++..+. ...|+ ..+|..+...|...|++++|++.+++..+..+..+.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8889999999999999999999998731 11122 258888999999999999999999999843222222222 4
Q ss_pred HHHHHHHHHHHhcCChhhH-HHHHHHHhc
Q 009424 462 VNVINFFKACEEESDMGSK-EAFVALLRQ 489 (535)
Q Consensus 462 ~~~~~ll~a~~~~g~~~~a-~~~~~~~~~ 489 (535)
.+|..+...+...|++++| ...+++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5777888899999999999 777777653
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=1.9e-06 Score=79.25 Aligned_cols=97 Identities=12% Similarity=-0.043 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 246 VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 246 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
...+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++..+... .+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3444445555555555555555555555321 23445555555555555555555555555543211 12334444455
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 009424 326 LYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~ 345 (535)
+|...|++++|+..|++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.9e-06 Score=74.64 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=54.1
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCC-chhhHHHHHHHHHhcCCH
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVF----PGV-TNLGYHAMISSLARIGDI 368 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~ll~~~~~~g~~ 368 (535)
..|++++|.++++.+.. .......++..+...|...|++++|+..+++..... ..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444322 111233455555566666666666666666554411 111 113344444555555555
Q ss_pred hhHHHHHHHHHhc---CC-CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 369 EGMEKIFEEWLSV---KS-SY--DPRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 369 ~~a~~~~~~~~~~---~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
++|...+.+..+. .. .+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555544432 00 00 12233444444455555555555554443
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=2.2e-06 Score=72.56 Aligned_cols=116 Identities=9% Similarity=0.097 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCh--hHHH
Q 009424 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSW-YVKEGNF--DKAE 407 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~ 407 (535)
|++++|+..+++.....+. +...+..+...+...|++++|...++.+.+..+. +...+..+..+ |...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3344444444444333221 1233444444444444444444444444433322 33344444444 4444444 5555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..|++..+.... +...|..+...|...|++++|++.|+++.
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555544443222 34444444444555555555555555544
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=1.1e-05 Score=63.24 Aligned_cols=60 Identities=15% Similarity=0.339 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..+...+...|++++|...++.+.+.... +..++..+...|...|++++|...|+++.+
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333344444444444444444444333221 333444444444444444444444444444
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=1.4e-06 Score=78.42 Aligned_cols=141 Identities=11% Similarity=-0.059 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHH
Q 009424 356 HAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN--STSWETLAEGHI 433 (535)
Q Consensus 356 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~ 433 (535)
......+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 345566777788888888887765543 333255555567777888888888887443321 111 235666777788
Q ss_pred ccccHHHHHHHHHHhHHhccCCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 434 RERRILEALSCLKGAFAAEGAKSWRPK--PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
+.|++++|++.|++.. .....|. .......-.++.+.|+.++|..+|+++....+. ...+..|.+.
T Consensus 183 ~LG~~~eAl~~l~~a~----~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 183 NLALFTEAERRLTEAN----DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HTTCHHHHHHHHHHHH----TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHh----cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 8888888888888887 3333254 234555556777888888888888888887777 5566666543
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=5.6e-06 Score=68.86 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSC 256 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~ 256 (535)
..|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|++.|++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555555555566666666665555432 2234445555555555555555555555555442 22344444455555
Q ss_pred hcCCCHhHHHHHHHHhHh
Q 009424 257 GSQGSTEKMEGVFELMKV 274 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~ 274 (535)
...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 92 MALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 555555555555555443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=5.1e-06 Score=65.77 Aligned_cols=112 Identities=14% Similarity=-0.029 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINF 467 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~l 467 (535)
.+..+...+...|++++|...|++..+.... +...|..+...+...|++++|++.+++..+ ..| +...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~ 86 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAIC------IDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHh------cCccCHHHHHHH
Confidence 3444444555555555555555555443221 344455555555555555555555555551 122 23344444
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHh
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDE 507 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~ 507 (535)
...+...|++++|.+.+++..+..+.....+..+..+|..
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 4455555555555555555555544443444444444433
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=4.2e-06 Score=66.64 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNV 464 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~ 464 (535)
+...+..+...+.+.|++++|...|++..+.... +...|..+...|...|++++|++.++++.+ ..| +...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~ 87 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQ------LEPTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH------HCTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------hCCCchHHH
Confidence 3455556666666666666666666666654322 456666666666666666777666666662 222 34555
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhHh
Q 009424 465 INFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDE 507 (535)
Q Consensus 465 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~ 507 (535)
..+..++...|++++|.+.+++..+..+.....+..+..+|..
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5566666666677777777766666555544455555555543
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=0.00013 Score=67.97 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=122.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-CHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhc-C-CHH
Q 009424 223 KIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQG-STEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKM-G-QVE 299 (535)
Q Consensus 223 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 299 (535)
+.+..++|+++++.++..+. -+..+|+.--..+...| .+++++.+++.+.+.. +.+..+|+.-...+.+. + +.+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChH
Confidence 33444567777777666542 24445555555555555 4666666666666532 45556666655555554 5 566
Q ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 300 KAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 300 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
+++.+++.+.+... .|-..|+.-.-.+.+.|.++ . .+ ...+.++.+..++++
T Consensus 143 ~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~-------------~-~~-------------~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 143 SEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLG-------------R-IS-------------EAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTT-------------C-CC-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccc-------------c-cc-------------hhhHHHHHHHHHHHH
Confidence 66666666654321 24444443332222222222 0 00 001125555666665
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH--------------
Q 009424 380 SVKSSYDPRIANLMMSWYVKEGN-------FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI-------------- 438 (535)
Q Consensus 380 ~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-------------- 438 (535)
+..+. |...|+.....+.+.++ ++++++.+++.....+. |...|+-+-..+.+.|+.
T Consensus 195 ~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~ 272 (349)
T 3q7a_A 195 RVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTAS 272 (349)
T ss_dssp HHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-
T ss_pred HhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence 55544 55566555555555554 56677777776665544 666666655555554443
Q ss_pred ------HHHHHHHHHhHHhccC-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 009424 439 ------LEALSCLKGAFAAEGA-KSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 488 (535)
Q Consensus 439 ------~~A~~~~~~m~~~~~~-~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 488 (535)
.+..+...++....+. ..-.++...+..+...|...|+.++|.++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 273 KLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp -------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2333333333310000 0113466677778888888888889999998876
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=1.1e-06 Score=71.93 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ 466 (535)
..+..+...+.+.|++++|...|++.....+. +...|..+...|...|++++|++.|+++.+ +.| +...+..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------l~p~~~~~~~~ 94 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAV------MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCTHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCchHHHH
Confidence 34444555555556666666666555554332 455555555555556666666666665552 223 2344445
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+..++...|++++|.+.+++.++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 555555556666666666655554443
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.40 E-value=1.1e-05 Score=76.21 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHH
Q 009424 281 NWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMIS 360 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 360 (535)
+...+..+...|.+.|++++|...|++..+.. |+...+ ..+.+..+- .. ....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~~-------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-AL-------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-HH-------HHHHHHHHHH
Confidence 45578888888888888888888888877643 332100 001111000 00 0234556666
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE 440 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 440 (535)
++.+.|++++|...++++++..+. +...|..+..+|...|++++|...|++..+..+. +...+..+...+.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777766665443 5666777777777777777777777777765433 56667777777777777776
Q ss_pred H-HHHHHHhH
Q 009424 441 A-LSCLKGAF 449 (535)
Q Consensus 441 A-~~~~~~m~ 449 (535)
| .++|+.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 34555554
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=8.9e-06 Score=64.30 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+..+...+...|++++|...++...+.... +...+..+...|...|++++|...+++..+.... +...|..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 3444455555555555555555555544322 4555555566666666666666666665554322 4555556666666
Q ss_pred ccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCC
Q 009424 434 RERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESD 476 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~ 476 (535)
..|++++|.+.|+++.+ ..| +...+..+..++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE------LDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHh------cCccchHHHHHHHHHHHHHhc
Confidence 66666666666666652 223 33444444444444444
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=3.1e-06 Score=73.26 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=55.4
Q ss_pred hCCHhhHHH---HHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH----CCCC-cCcchHHHHHHHHHhcCCh
Q 009424 156 VHGVASAED---FFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRD----KGYA-VHSLPYNVMMTLYMKIKEY 227 (535)
Q Consensus 156 ~g~~~~A~~---~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~ 227 (535)
.|++++|.+ .+..-+. ....+++.+...|...|++++|...|++..+ .+.. ....++..+...+...|++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455555555 3333221 2345566666666666666666666665543 1111 1223455555556666666
Q ss_pred hHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 228 DEVESMVSEMKEK----GIRL--DVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 228 ~~a~~~~~~m~~~----g~~p--d~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666665554432 1011 12234444445555555555555555443
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.40 E-value=1.9e-06 Score=70.59 Aligned_cols=95 Identities=16% Similarity=0.003 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..+..+...+...|++++|...|+.+....+. +...|..+..+|...|++++|...|++.....+. +...|..+...|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34555666677777777777777777665543 6667777777777777777777777777765443 566677777777
Q ss_pred HccccHHHHHHHHHHhH
Q 009424 433 IRERRILEALSCLKGAF 449 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~ 449 (535)
...|++++|++.|+++.
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777777777
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=9.8e-06 Score=72.98 Aligned_cols=189 Identities=10% Similarity=-0.084 Sum_probs=109.3
Q ss_pred ccCCCCccHHHHHHHHHhCCCCCC-HHHHHHH-------HHHHHHccChHHHHHHHHHHHhcC-----CCcc--------
Q 009424 82 LMDNPQLGSASVLNDWEKGGRSLT-KWELCRV-------VKELRKFRRYKHALEVYDWMNNRG-----ERFR-------- 140 (535)
Q Consensus 82 ~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g-----~~~~-------- 140 (535)
+.+++. .|...|.+..+ ..|+ ...|..+ ...+.+.++..+++..+...+... ..+.
T Consensus 18 ~~~d~~-~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEA-RSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHH-HHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHH-HHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 567777 88888888877 4453 3445444 344555555555555555444411 0000
Q ss_pred -----cCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC--cch
Q 009424 141 -----LSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH--SLP 213 (535)
Q Consensus 141 -----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~ 213 (535)
............+...|++++|.++|+.+....|+....-.+...+.+.+++++|+..|+...... .|. ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 001233345566777778888888887776654544355555556777777777777776443321 110 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHhHHHHHHHHhHh
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD--VYSYNIWLSSCGSQGSTEKMEGVFELMKV 274 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 274 (535)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566667777777777777776664332243 22344445566667777777777777664
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=3.6e-06 Score=71.20 Aligned_cols=126 Identities=8% Similarity=0.114 Sum_probs=102.9
Q ss_pred HhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHccccH--H
Q 009424 363 ARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG-HIRERRI--L 439 (535)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 439 (535)
...|++++|...++...+..+. +...|..+...|...|++++|...|++..+.... +...|..+... |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 4568899999999998877654 7889999999999999999999999999886444 67788888888 7789998 9
Q ss_pred HHHHHHHHhHHhccCCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 440 EALSCLKGAFAAEGAKSWRPK-PVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 440 ~A~~~~~~m~~~~~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+|++.++++.+ ..|+ ...+..+...+...|++++|...++++.+..+....
T Consensus 99 ~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALA------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 99999999993 3454 567778888999999999999999999998877643
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1e-05 Score=63.94 Aligned_cols=94 Identities=19% Similarity=0.073 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+......+.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|...|++..+.... +...|..+...+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3445555566666666666666666555433 5566666666666666666666666666664333 4556666666666
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
..|++++|++.|+++.
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 6666666666666666
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=3.8e-06 Score=77.20 Aligned_cols=98 Identities=14% Similarity=-0.045 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHH
Q 009424 105 TKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALL 183 (535)
Q Consensus 105 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li 183 (535)
+...+..+...+...|++++|...+...++.. +.+...+..+...|.+.|++++|...+++.... +.+...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34556666677778888888888888887765 345666677777777777777777777776655 34566777777
Q ss_pred HHHHHcCCHhHHHHHHHHHHHC
Q 009424 184 NAYVRARMRGNAELLIDKMRDK 205 (535)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~ 205 (535)
..|.+.|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777776553
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=1.4e-05 Score=61.85 Aligned_cols=108 Identities=10% Similarity=-0.065 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ 466 (535)
..+..+...+...|++++|...|++....... +...|..+...+...|++++|.+.++++.+ ..| +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~ 77 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD------LKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHH------hCcccHHHHHH
Confidence 44555555666666666666666666554322 455566666666666666666666666662 223 3445555
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHH
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLI 502 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~ 502 (535)
+..++...|++++|.+.+++..+..+.....+..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666666666666666666666555444444333
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.34 E-value=8.9e-06 Score=64.66 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHH
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISS 361 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 361 (535)
...|..+...|.+.|++++|...|++..+... .+...|..+...|...|++++|+..+++.....+. +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 34444555555555555555555555443211 12333444444444444444444444444433222 12233333333
Q ss_pred HHhcCCHhhHHHHHHHH
Q 009424 362 LARIGDIEGMEKIFEEW 378 (535)
Q Consensus 362 ~~~~g~~~~a~~~~~~~ 378 (535)
+...|++++|.+.+++.
T Consensus 94 ~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 34444444444444433
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=1.9e-05 Score=63.19 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..+..+...+...|++++|...+...++..+. +...+..+..+|...|++++|...|++..+.... +...|..+...|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 34445555555555555555555555544332 4455555555555556666666655555554332 455555555556
Q ss_pred HccccHHHHHHHHHHhH
Q 009424 433 IRERRILEALSCLKGAF 449 (535)
Q Consensus 433 ~~~g~~~~A~~~~~~m~ 449 (535)
...|++++|++.|+++.
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 66666666666666555
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=1.7e-05 Score=74.92 Aligned_cols=157 Identities=8% Similarity=-0.091 Sum_probs=80.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
+++++|++.++...+.. +-+...+..+...+.+.|++++|...|++..+. .|+... -..+.+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-----------~~~~~~~~~ 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESS-----------FSNEEAQKA 191 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCC-----------CCSHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhcccc-----------CChHHHHHH
Confidence 34455555544333321 125677888899999999999999999998864 232100 000011000
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
- . .....|..+..+|.+.|++++|+..|++.....+. +...+..+..++...|++++|...|+++++..+.
T Consensus 192 ~-~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 192 Q-A-------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp H-H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred H-H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 0 0 01123344444444444444444444444443222 2234445555555555555555555555544333
Q ss_pred CCHHHHHHHHHHHHHcCChhHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A 406 (535)
+...+..+..++.+.|+.++|
T Consensus 263 -~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 263 -NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=2.6e-06 Score=73.67 Aligned_cols=95 Identities=7% Similarity=-0.038 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..+..+..++...|++++|...++..++.... +...+..+..+|...|++++|...|++..+.... +...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 34556666666677777777777766665433 5566666667777777777777777776664333 455666666666
Q ss_pred HccccHHHHH-HHHHHhH
Q 009424 433 IRERRILEAL-SCLKGAF 449 (535)
Q Consensus 433 ~~~g~~~~A~-~~~~~m~ 449 (535)
...++.+++. ..|..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6666555555 4444444
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.28 E-value=2.1e-06 Score=74.28 Aligned_cols=148 Identities=10% Similarity=-0.058 Sum_probs=71.3
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCc----------------c
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHS----------------L 212 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~ 212 (535)
+......|++++|.+.|+.-... ......|..+...+.+.|++++|...|++..+.. +.+. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence 34445556666666666543321 1234456677777888888888888888877642 1111 3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHH
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMY 292 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 292 (535)
.|..+...|.+.|++++|+..++...+.. +.+...+..+..++...|++++|...|+...+.. +.+..++..+...+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 44445555555555555555555555442 2234444445555555555555555555544321 22344444444444
Q ss_pred HhcCCHHHH
Q 009424 293 IKMGQVEKA 301 (535)
Q Consensus 293 ~~~g~~~~A 301 (535)
...++.+++
T Consensus 167 ~~~~~~~~~ 175 (198)
T 2fbn_A 167 NKLKEARKK 175 (198)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 444443333
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=7e-06 Score=62.93 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC---CHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP---KPVN 463 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p---~~~~ 463 (535)
...+..+...+.+.|++++|...|++..+.... +...|..+...+...|++++|++.|+++.+ ..| +...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~ 78 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVIN------VIEDEYNKDV 78 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TSCCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCcccchHHH
Confidence 344455555666666666666666666554332 455566666666666666666666666662 223 3455
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHhcCCCCC
Q 009424 464 VINFFKACEEE-SDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 464 ~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~ 494 (535)
+..+...+... |++++|.+.++...+..+.+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 55556666666 66666666666666655443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=9.8e-06 Score=65.68 Aligned_cols=91 Identities=16% Similarity=0.022 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER 436 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 436 (535)
.+...+.+.|++++|...|+.+....+. +...|..+..+|.+.|++++|...|++.....+. +...|..+...|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 3344444555555555555554444332 4444445555555555555555555555443322 3444444555555555
Q ss_pred cHHHHHHHHHHhH
Q 009424 437 RILEALSCLKGAF 449 (535)
Q Consensus 437 ~~~~A~~~~~~m~ 449 (535)
++++|++.|+++.
T Consensus 101 ~~~~A~~~~~~al 113 (142)
T 2xcb_A 101 DLDGAESGFYSAR 113 (142)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555554
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.2e-05 Score=63.41 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVI 465 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~ 465 (535)
...+..+...+.+.|++++|...|++..+.... +...|..+...|.+.|++++|++.++++.+ +.| +...|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~ 76 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE------KDPNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCCCcHHHHH
Confidence 456777888899999999999999999987554 788999999999999999999999999993 345 456788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCC------CCChhhHHHHHHHh
Q 009424 466 NFFKACEEESDMGSKEAFVALLRQPG------YRKEKDYMSLIGLT 505 (535)
Q Consensus 466 ~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~L~~~y 505 (535)
.+..++...|++++|.+.+++..+.. +........+..+.
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88889999999999999999999887 44444555544443
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=4.5e-05 Score=58.83 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+..+...+...|++++|...++...+..+. +...+..+...|.+.|++++|...+++..+.... +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3455556666666666666666666654432 5566666667777777777777777776665332 5666667777777
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
..|++++|.+.+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 7777777777777777
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=2e-05 Score=61.81 Aligned_cols=93 Identities=14% Similarity=0.022 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIR 434 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 434 (535)
+..+...+.+.|++++|...++.+++..+. +...|..+..++...|++++|+..|++..+..+. +...|..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344555666667777777777766665543 5666666667777777777777777776665443 55666667777777
Q ss_pred cccHHHHHHHHHHhH
Q 009424 435 ERRILEALSCLKGAF 449 (535)
Q Consensus 435 ~g~~~~A~~~~~~m~ 449 (535)
.|++++|++.++++.
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777777777766
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=1.7e-05 Score=62.82 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCC----HhHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG--KPN----STSWET 427 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~ 427 (535)
.+..+...+.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|++.|++..+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556666777777777777777777766544 566777777777777777777777777665321 111 235666
Q ss_pred HHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHH
Q 009424 428 LAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVI 465 (535)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~ 465 (535)
+...+...|++++|++.|++.. ...||+.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal------~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL------SEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH------HHSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH------hhCcCHHHHH
Confidence 6677777888888888888877 2456655443
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00038 Score=64.52 Aligned_cols=131 Identities=6% Similarity=-0.096 Sum_probs=68.0
Q ss_pred hhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCC-hhHHHHHHH
Q 009424 160 ASAEDFFLSLPDT-LKDRRVYGALLNAYVRAR--MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKE-YDEVESMVS 235 (535)
Q Consensus 160 ~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~ 235 (535)
+++..+++.+... +.+..+|+.--..+.+.| .+++++.+++++.+.. +-|..+|+.-.-.+...|. ++++++.+.
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444444443332 345566665555555555 3566666666666653 3355566655555555565 466666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcC--------------CCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh
Q 009424 236 EMKEKGIRLDVYSYNIWLSSCGSQ--------------GSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK 294 (535)
Q Consensus 236 ~m~~~g~~pd~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 294 (535)
.+.+..+ -|...|+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+
T Consensus 170 ~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 170 SLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHS
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 6666543 2555555444433332 23455555555555322 4455555544333333
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=1.3e-05 Score=64.99 Aligned_cols=104 Identities=11% Similarity=-0.011 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNV 464 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~ 464 (535)
+...+..+...+.+.|++++|...|++....++. +...|..+...|.+.|++++|+..|+++.+ +.| +...+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~ 89 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGAL------MDINEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCTHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCcHHH
Confidence 3455666778899999999999999999987554 788899999999999999999999999993 345 45677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 465 INFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 465 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
..+..++...|++++|.+.++..++..+.+..
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 78888999999999999999999988765443
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=1.8e-05 Score=65.90 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
.+..+...+...|++++|...|++.++.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+...|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444455555555555555555555544332 4445555555555555555555555555543322 3445555555555
Q ss_pred ccccHHHHHHHHHHhH
Q 009424 434 RERRILEALSCLKGAF 449 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~ 449 (535)
..|++++|++.|+++.
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 5555555555555555
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=7e-06 Score=65.12 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC----HHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----PVN 463 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----~~~ 463 (535)
..+..+...+.+.|++++|+..|++..+..+. +...|..+...|.+.|++++|++.++++.+..+.. .++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET--RADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc--chhhHHHHHH
Confidence 45667888999999999999999999987554 78889999999999999999999999998432211 112 135
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
|..+-.++...|++++|.+.+++.++..+.|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 66677788899999999999999887665543
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=2.5e-05 Score=65.05 Aligned_cols=100 Identities=10% Similarity=-0.088 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-HHHHHH
Q 009424 388 RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK-PVNVIN 466 (535)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ 466 (535)
..+..+...|.+.|++++|+..|++..+.... +...|..+...|.+.|++++|++.|+++.+ +.|+ ...|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~ 84 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV------VDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHH
Confidence 34444555555555555555555555544322 445555555555555555555555555551 2232 344444
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
+..++...|++++|.+.+++.++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 4555555555555555555555554443
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=6e-05 Score=73.85 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHhcCCCHhHHHHHHHHhHhCCCCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 255 SCGSQGSTEKMEGVFELMKVDKAVNPNW---------------TTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 255 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
.+.+.|++++|.+.|..+.+...-..+. ..+..+...|.+.|++++|.+++..+.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455666666666666665432111110 124445555555555555555555543
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=2.7e-05 Score=62.35 Aligned_cols=102 Identities=9% Similarity=-0.056 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVN 463 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~ 463 (535)
.+...+..+...+.+.|++++|...|++..+.... +...|..+...|...|++++|+..++++.+ +.| +...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~ 79 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE------LDGQSVKA 79 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCchhHHH
Confidence 36788899999999999999999999999887544 688999999999999999999999999993 334 4667
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 464 VINFFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 464 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
+..+..++...|++++|...+++..+..+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888999999999999999999877655
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=2.7e-05 Score=61.49 Aligned_cols=94 Identities=11% Similarity=0.257 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCC----HhHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGG--KPN----STSWETL 428 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 428 (535)
+..+...+...|++++|...++...+.... +...+..+...|...|++++|...+++..+... .++ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 334444444445555555555444443321 344444444444444444444444444443211 011 3334444
Q ss_pred HHHHHccccHHHHHHHHHHhH
Q 009424 429 AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~ 449 (535)
...|...|++++|.+.|+++.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 444444444444444444444
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=1.7e-05 Score=62.62 Aligned_cols=116 Identities=10% Similarity=-0.052 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC----HH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----PV 462 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----~~ 462 (535)
...+..+...+...|++++|...|++..+.... +...|..+...|...|++++|+..++++.+..+.. .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHH
Confidence 356677888888899999999999988876433 67788888888999999999999999888443221 233 56
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHhH
Q 009424 463 NVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTD 506 (535)
Q Consensus 463 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~ 506 (535)
++..+..++...|++++|.+.++...+..+. ......+...+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~ 123 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 7777778888999999999999999887663 334445555443
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=4.1e-05 Score=58.47 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=48.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCC--CHHHHHHHH
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP--NWTTFSTMA 289 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li 289 (535)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHH
Confidence 344445555555555555555555555442 2234444455555555555555555555554321 22 344555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHh
Q 009424 290 TMYIKM-GQVEKAEESLRRVES 310 (535)
Q Consensus 290 ~~~~~~-g~~~~A~~~~~~m~~ 310 (535)
..|.+. |++++|.+.|+...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 555555 555555555555543
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.0003 Score=68.80 Aligned_cols=198 Identities=8% Similarity=-0.058 Sum_probs=132.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC
Q 009424 218 MTLYMKIKEYDEVESMVSEMKEKGIRLDV----------------YSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN 281 (535)
Q Consensus 218 i~~~~~~g~~~~a~~~~~~m~~~g~~pd~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 281 (535)
...+.+.|++++|++.|....+....... ..+..+...|.+.|++++|.+.+..+.+..+-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999999987533221 23678899999999999999999988753222222
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----ccCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--
Q 009424 282 WT----TFSTMATMYIKMGQVEKAEESLRRVESR----ITGRD-RVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-- 350 (535)
Q Consensus 282 ~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-- 350 (535)
.. +.+.+-..+...|+.+.|..+++..... +..+. ..++..+...|...|++++|..++++........
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2333334445578899999988886442 22222 2356677888888888888888888776532221
Q ss_pred --ch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcC--C-CCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 351 --TN-LGYHAMISSLARIGDIEGMEKIFEEWLSVK--S-SYD---PRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 351 --~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.. ..+..++..|...|++++|..+++...... . .|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 467777788888888888888887765431 1 111 23455566666777888888777766653
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=2.2e-05 Score=61.51 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINF 467 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~l 467 (535)
.+..+...+.+.|++++|...|++..+..+. +...|..+...+...|++++|+..|+++. .+.| +...+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al------~l~P~~~~~~~~l 91 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHAR------MLDPKDIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHH
Confidence 4556677889999999999999999987554 78899999999999999999999999999 3456 45677788
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCC
Q 009424 468 FKACEEESDMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 468 l~a~~~~g~~~~a~~~~~~~~~~~~~~ 494 (535)
..++...|++++|...+++.++..+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 889999999999999999999876643
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=0.00017 Score=58.29 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+..+...+...|++++|...++...+.... +...+..+..+|...|++++|...|++..+
T Consensus 68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 68 HRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444433222 344444445555555555555555555544
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00016 Score=58.51 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD----PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETL 428 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 428 (535)
..+..+...+...|++++|...+++..+.. |+ ...+..+...|...|++++|...+++..+.... +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 344555555566666666666666655433 23 455556666666666666666666666654322 45556666
Q ss_pred HHHHHccccHHHHHHHHHHhH
Q 009424 429 AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~ 449 (535)
...|...|++++|.+.|++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666666
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=7.2e-05 Score=74.21 Aligned_cols=116 Identities=8% Similarity=-0.010 Sum_probs=59.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009424 328 GSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|.+.+++..+..+. +...+..+..+|.+.|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 3445555555555555554322 2344555555566666666666666655554432 4555555666666666666666
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHH--HHccccHHHHHHHHH
Q 009424 408 AFFNSIIEEGGKPNSTSWETLAEG--HIRERRILEALSCLK 446 (535)
Q Consensus 408 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 446 (535)
+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554322 23334444333 555566666666665
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=8.3e-05 Score=61.05 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITG-RD----RVPYHYLLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 344 (535)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|+..+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555566666666666666655432111 01 1234444555555555555555555543
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=6.8e-05 Score=61.60 Aligned_cols=131 Identities=10% Similarity=0.067 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-c--h--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC-CC----HH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV-T--N--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSS-YD----PR 388 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~--~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~ 388 (535)
++..+...|...|++++|+..+++........ + . ..+..+...+...|++++|...+++..+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 45666677778888888888887765532111 1 1 35666667777777777777777766543211 11 33
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC--CC--C-CHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEG--GK--P-NSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
++..+...+...|++++|...+++..+.. .. + ....+..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45556666667777777777766655320 00 0 12345555566666666777766666655
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00037 Score=70.46 Aligned_cols=172 Identities=9% Similarity=-0.011 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC----------HhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-
Q 009424 333 KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD----------IEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG- 401 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 401 (535)
.++|++.++++....+.. ...|+.--..+...|+ ++++.+.++.+.+..++ +..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~-~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchh-HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 466777777777754442 2345544444555555 88888889888887766 7888888888888888
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc-cHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhc----
Q 009424 402 -NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER-RILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEE---- 474 (535)
Q Consensus 402 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~---- 474 (535)
+++++++.++++.+.+.+ |..+|+.-...+.+.| .++++++.++++. + ..| |...|.....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I----~--~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLI----T--RNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT----T--TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHH----H--HCCCCccHHHHHHHHHHhhcccc
Confidence 669999999999987766 8888888888888888 8899999999988 3 344 556677666665553
Q ss_pred ----------CChhhHHHHHHHHhcCCCCChhhHHHHHHHhHhhhhccc
Q 009424 475 ----------SDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENN 513 (535)
Q Consensus 475 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y~~~~~~~~ 513 (535)
+.++++.+.+++.++..|.....|..+.-.+.+.++..+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457889999999999898888888888888876666443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=0.00021 Score=56.30 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPN---STSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+..+..+|.+.|++++|...|++..+..+. + ...+..+...+...|++++|.+.|+++.
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444444444432211 1 2333344444444444444444444444
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=0.00051 Score=53.94 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=49.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCch--hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCC--HHHHHHHHHHHHH
Q 009424 324 LSLYGSVGKKEEVYRVWNLYRSVFPGVTN--LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYD--PRIANLMMSWYVK 399 (535)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 399 (535)
...+...|++++|+..|+......+.... ..+..+..++...|++++|...++.+.+..+... ...+..+..+|.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444555555555555555554333221 2344455555566666666666665555433211 3445555666666
Q ss_pred cCChhHHHHHHHHHHHc
Q 009424 400 EGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 400 ~g~~~~A~~~~~~m~~~ 416 (535)
.|++++|...|+++.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666666554
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=0.0001 Score=60.99 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 387 PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
..+|..+..+|.+.|++++|+..+++..+..+. +...|..+..+|...|++++|+..|++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 345555666666666666666666666654333 45566666666666666666666666666
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.91 E-value=0.00022 Score=70.41 Aligned_cols=145 Identities=11% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHH
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISS 361 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 361 (535)
...|..+...|.+.|++++|...|++..+.. |+...+ .-+...+ .... ....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~~-------~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SESF-------LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHHH-------HHHHHHHHHHH
Confidence 3456666777777777777777777765532 221100 0000000 0000 12456677777
Q ss_pred HHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHH
Q 009424 362 LARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEA 441 (535)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 441 (535)
+.+.|++++|...++++++..+. +...|..+..+|...|++++|...|++..+.... +...|..+...+.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766544 6677777777888888888888888877765433 556677777777777777766
Q ss_pred H-HHHHHhH
Q 009424 442 L-SCLKGAF 449 (535)
Q Consensus 442 ~-~~~~~m~ 449 (535)
. .+++.|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 5 3455555
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=0.00011 Score=60.76 Aligned_cols=115 Identities=9% Similarity=0.007 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc--------CC---------CCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEE--------GG---------KPNSTSWETLAEGHIRERRILEALSCLKGAFAA 451 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (535)
.+......+.+.|++++|...|++..+. .. .-+...|..+..+|.+.|++++|+..++++.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~- 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK- 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence 3444455555566666666665555442 00 11356788899999999999999999999993
Q ss_pred ccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh-hHHHHHHHhHhhh
Q 009424 452 EGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEK-DYMSLIGLTDEAV 509 (535)
Q Consensus 452 ~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~L~~~y~~~~ 509 (535)
+.| +...|..+..++...|++++|...+++.++..+.... ....|..+.....
T Consensus 92 -----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 92 -----REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp -----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred -----cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 345 4568888888999999999999999999999888763 5555555554333
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=2.2e-05 Score=61.05 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=45.5
Q ss_pred cCCHhhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHH
Q 009424 365 IGDIEGMEKIFEEWLSVKS--SYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
.|++++|...|++.++.+. +.+...+..+...|.+.|++++|...|++..+..+. +...+..+...|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 3555566666666555431 113445555566666666666666666666554333 4555555666666666666666
Q ss_pred HHHHHhH
Q 009424 443 SCLKGAF 449 (535)
Q Consensus 443 ~~~~~m~ 449 (535)
+.|++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.83 E-value=7.6e-05 Score=74.02 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=94.7
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcccc
Q 009424 358 MISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERR 437 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 437 (535)
+...+.+.|++++|.+.+++..+..+. +...|..+..+|.+.|++++|++.+++..+.... +...|..+...|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 334556789999999999999887654 6889999999999999999999999999987544 68889999999999999
Q ss_pred HHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHH--HHhcCChhhHHHHHH
Q 009424 438 ILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKA--CEEESDMGSKEAFVA 485 (535)
Q Consensus 438 ~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a--~~~~g~~~~a~~~~~ 485 (535)
+++|++.|+++.+ +.|+. ..+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVK------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH------HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999993 33432 344444444 778899999999998
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=0.00065 Score=55.12 Aligned_cols=77 Identities=14% Similarity=0.020 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCCC-CHhHH----HHHHHHHHccccHHHHHHHHHHhHHhcc-CCCC
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEE-----GGKP-NSTSW----ETLAEGHIRERRILEALSCLKGAFAAEG-AKSW 457 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~g~ 457 (535)
.|..+..++.+.|++++|+..+++..+. .+.| +...| .....++...|++++|++.|++..+..+ +.|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 7777778888888888888888887764 1134 45667 7888888888999999999988885432 4455
Q ss_pred CCCHHHHH
Q 009424 458 RPKPVNVI 465 (535)
Q Consensus 458 ~p~~~~~~ 465 (535)
.+......
T Consensus 139 ~~~~~~~~ 146 (159)
T 2hr2_A 139 TPGKERMM 146 (159)
T ss_dssp CTTHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=0.00047 Score=67.96 Aligned_cols=158 Identities=7% Similarity=-0.037 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009424 225 KEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEES 304 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 304 (535)
+++++|++.|+...+.. +-+...+..+...+.+.|+++.|...|++..+...-.++ + .-+...+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~-----------~~~~~~~- 311 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG---L-----------SEKESKA- 311 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS---C-----------CHHHHHH-
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc---C-----------ChHHHHH-
Confidence 34555655554333321 114567888888999999999999999998863211111 0 0000000
Q ss_pred HHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 009424 305 LRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (535)
... -....|..+..+|.+.|++++|+..|++.....+. +...|..+..+|...|++++|...|+++++..+.
T Consensus 312 ~~~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 312 SES-------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 000 01223444445555555555555555555544332 2344555555556666666666666665554332
Q ss_pred CCHHHHHHHHHHHHHcCChhHHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAE 407 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~ 407 (535)
+...+..+..++.+.|+.+++.
T Consensus 384 -~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 -NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.0016 Score=65.77 Aligned_cols=173 Identities=12% Similarity=0.018 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 009424 297 QVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK----------KEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIG 366 (535)
Q Consensus 297 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 366 (535)
..++|++.++.+....+ -+...|+.--..+.+.|+ ++++++.++.+....++ +...|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 34567777777766432 133456655555555555 78888888888876555 3356766667777778
Q ss_pred --CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc--------
Q 009424 367 --DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEG-NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE-------- 435 (535)
Q Consensus 367 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 435 (535)
+++++.+.++.+.+..+. +...|+.-...+.+.| .++++.+.++++.+..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 668888888888887766 7788888777778888 788888888888877665 788888777666552
Q ss_pred ------ccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhh
Q 009424 436 ------RRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGS 479 (535)
Q Consensus 436 ------g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~ 479 (535)
+.++++++.++++. .+.| |...|...-..+...+..++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai------~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAF------FTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHH------HHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHH------hhCCCCccHHHHHHHHHhcCCCccc
Confidence 67899999999999 3455 45677777777777666444
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.74 E-value=0.00049 Score=65.61 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGH 432 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 432 (535)
..|..+..+|.+.|++++|...++++++..+. +...+..+..+|.+.|++++|...|++..+.... +...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45667777777778888888888877765543 5677777777888888888888888877765433 566666666666
Q ss_pred HccccHHHHHH
Q 009424 433 IRERRILEALS 443 (535)
Q Consensus 433 ~~~g~~~~A~~ 443 (535)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=4.8e-05 Score=59.09 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 213 PYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 213 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
.|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 1123333334444444444444444444433
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.70 E-value=0.00015 Score=58.73 Aligned_cols=100 Identities=11% Similarity=0.011 Sum_probs=70.0
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGN----------FDKAEAFFNSIIEEGGKPNSTSWETLAEGHI 433 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 433 (535)
+.+.+++|.+.++..++..+. +...|..+..++...++ +++|+..|++..+..+. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 344555666666665555544 55555555555555544 45888888888886555 6778888888888
Q ss_pred cc-----------ccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH
Q 009424 434 RE-----------RRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC 471 (535)
Q Consensus 434 ~~-----------g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~ 471 (535)
.. |++++|++.|+++. .+.|+...|...+..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl------~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAV------DEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHH------HHCTTCHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHH------HhCCCCHHHHHHHHHH
Confidence 76 48999999999999 5788887777666544
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.70 E-value=0.00031 Score=67.03 Aligned_cols=83 Identities=7% Similarity=-0.003 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHH
Q 009424 422 STSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMS 500 (535)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 500 (535)
...|..+...|.+.|++++|++.++++. .+.| +...|..+..++...|++++|.+.+++..+..+.....+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al------~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEAL------EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHH------HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445555555555666666666666655 2233 23445555555555566666666666655555544444445
Q ss_pred HHHHhHhhhh
Q 009424 501 LIGLTDEAVA 510 (535)
Q Consensus 501 L~~~y~~~~~ 510 (535)
|..++...++
T Consensus 347 l~~~~~~~~~ 356 (370)
T 1ihg_A 347 LLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444333
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=0.00011 Score=69.34 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=83.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 318 VPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
..|..+...+.+.|++++|+..|++..... |+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 347777788888899999999999887743 22211 122233333332221 23678888899
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHH--HhcC
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKAC--EEES 475 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~--~~~g 475 (535)
.+.|++++|+..+++..+.... +...|..+..+|...|++++|++.|+++. .+.|+.......+..+ ...+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al------~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQ------KYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTT------C---------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999886543 78889999999999999999999999998 4566554333333322 3446
Q ss_pred ChhhHHHHHHHHhcCCCCC
Q 009424 476 DMGSKEAFVALLRQPGYRK 494 (535)
Q Consensus 476 ~~~~a~~~~~~~~~~~~~~ 494 (535)
..+.+...+..+.+..+.+
T Consensus 314 ~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHhhCCCCCC
Confidence 6778888888888766554
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.63 E-value=0.0001 Score=69.49 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHH
Q 009424 282 WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISS 361 (535)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 361 (535)
...+..+...|.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 457888888899999999999999998663 344321 223344444433221 1357788888
Q ss_pred HHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHccccHHH
Q 009424 362 LARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEG-HIRERRILE 440 (535)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~ 440 (535)
+.+.|++++|...++..++.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999988876543 6788888899999999999999999888764332 44455555444 234566778
Q ss_pred HHHHHHHhH
Q 009424 441 ALSCLKGAF 449 (535)
Q Consensus 441 A~~~~~~m~ 449 (535)
+.++|..|.
T Consensus 318 a~~~~~~~l 326 (338)
T 2if4_A 318 QKEMYKGIF 326 (338)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 888888887
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.57 E-value=0.0012 Score=53.57 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhc-------CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSV-------KSSYDPRIA----NLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.|..+..++.+.|++++|...+++.++. .+. +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666667777777777777777776664 432 45566 7778888888888888888888765
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.0007 Score=51.42 Aligned_cols=93 Identities=12% Similarity=-0.012 Sum_probs=74.2
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-----
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK----- 494 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----- 494 (535)
+...|..+...+...|++++|++.|+++.+ ..| +...|..+..++...|++++|.+.+++.++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 556788888899999999999999999983 344 56678888888999999999999999999988776
Q ss_pred -hhhHHHHHHHhHhhhhcccccCCCC
Q 009424 495 -EKDYMSLIGLTDEAVAENNKKNDED 519 (535)
Q Consensus 495 -~~~~~~L~~~y~~~~~~~~~~~~i~ 519 (535)
...+..+...|...|...+....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4466677777877777666555444
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00049 Score=52.30 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCC-----
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPK----- 460 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~----- 460 (535)
+...+..+...+.+.|++++|...|++..+.... +...|..+...|.+.|++++|++.++++. .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGL------RYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------TSCSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHH------HhCCCccHHH
Confidence 4456667777778888888888888887775443 67777778888888888888888888888 34555
Q ss_pred --HHHHHHHHHHHHhcCChhhHHHHH
Q 009424 461 --PVNVINFFKACEEESDMGSKEAFV 484 (535)
Q Consensus 461 --~~~~~~ll~a~~~~g~~~~a~~~~ 484 (535)
...+..+..++...|+.+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 334444445555555555554433
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.52 E-value=0.0005 Score=52.90 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+...++...+..+. +...+..+...|...|++++|...|++..+.... +...|..+...|...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556655554433 5566666666666777777777777666664333 45566666666677777777777776666
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.43 E-value=0.0021 Score=63.34 Aligned_cols=125 Identities=8% Similarity=-0.091 Sum_probs=85.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-----CCCC-ch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhc-----CCC-CC-HHHHH
Q 009424 326 LYGSVGKKEEVYRVWNLYRSV-----FPGV-TN-LGYHAMISSLARIGDIEGMEKIFEEWLSV-----KSS-YD-PRIAN 391 (535)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~-----~~~~-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~ 391 (535)
.+...|++++|+.++++.... |+.. +. .+++.+..+|...|++++|..++++.++. |.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 2222 12 57788888888888888888888776532 221 22 35677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH-----cCCC-CC-HhHHHHHHHHHHccccHHHHHHHHHHhHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSIIE-----EGGK-PN-STSWETLAEGHIRERRILEALSCLKGAFA 450 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (535)
.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++...+.+++|..+|+.+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887653 2322 11 23345566677778888888888888873
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.42 E-value=0.0018 Score=63.85 Aligned_cols=125 Identities=10% Similarity=-0.029 Sum_probs=93.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhc---ccCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCch--hhHH
Q 009424 291 MYIKMGQVEKAEESLRRVESR---ITGRD----RVPYHYLLSLYGSVGKKEEVYRVWNLYRS-----VFPGVTN--LGYH 356 (535)
Q Consensus 291 ~~~~~g~~~~A~~~~~~m~~~---g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~--~~~~ 356 (535)
.+...|++++|..++++..+. -..++ ..+++.+...|...|++++|+.++++... .|+..+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887543 12232 33788889999999999999999988754 3444333 6788
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHh-----cCCC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLS-----VKSS-YD-PRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.|...|...|++++|..++++..+ .|.. |+ ..+.+.+-.++...|.+++|+.+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 2332 11 33456677788888999999999999876
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.0037 Score=49.91 Aligned_cols=109 Identities=6% Similarity=-0.108 Sum_probs=56.5
Q ss_pred CHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHhHHH
Q 009424 191 MRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGS----QGSTEKME 266 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~ 266 (535)
++++|.+.|++..+.| +.... +-..|...+.+++|++.|++..+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666555555 22223 4444444445555666665555554 44444555555544 55555566
Q ss_pred HHHHHhHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 009424 267 GVFELMKVDKAVNPNWTTFSTMATMYIK----MGQVEKAEESLRRVESR 311 (535)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 311 (535)
+.|++..+. -+...+..|..+|.. .++.++|...|++..+.
T Consensus 82 ~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555542 244455555555555 55555555555555443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0029 Score=50.50 Aligned_cols=111 Identities=8% Similarity=-0.038 Sum_probs=59.9
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHH----cCCHhHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVR----ARMRGNA 195 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 195 (535)
+++++|.+.|....+.| .+... +-.+|...+.+++|.+.|++..+. .+...+..|-..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45666777777776665 11111 344444444555555555544332 345555555555555 5566666
Q ss_pred HHHHHHHHHCCCCcCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 009424 196 ELLIDKMRDKGYAVHSLPYNVMMTLYMK----IKEYDEVESMVSEMKEKG 241 (535)
Q Consensus 196 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 241 (535)
.+.|++..+.| +..++..|...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666655554 44555555555555 555666666665555554
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.28 E-value=0.0032 Score=45.54 Aligned_cols=62 Identities=15% Similarity=0.315 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
.+..+...+...|++++|...+++..+..+. +...+..+...|.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3344444445555555555555555443322 3444555555555555555555555555543
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.21 E-value=0.0014 Score=48.99 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+...+..+...|.+.|++++|+..|++..+..+. +...|..+...|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666777777777777777776665433 45566667777777777777777777666
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.20 E-value=0.0017 Score=47.06 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=63.9
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHH
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRP-KPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYM 499 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 499 (535)
+...|..+...+...|++++|++.|++..+ ..| +...+..+..++...|++++|.+.+++..+..+.....+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 345677788888889999999999999883 234 4567777888888999999999999999888777666777
Q ss_pred HHHHHhHh
Q 009424 500 SLIGLTDE 507 (535)
Q Consensus 500 ~L~~~y~~ 507 (535)
.+..+|..
T Consensus 82 ~l~~~~~~ 89 (91)
T 1na3_A 82 NLGNAKQK 89 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777744
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.20 E-value=0.0046 Score=47.29 Aligned_cols=78 Identities=8% Similarity=-0.051 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 336 VYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 336 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
|+..|++.....+. +...+..+...+...|++++|...++..++..+. +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444443222 2244555555566666666666666665554432 455566666666666666666666666554
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.17 E-value=0.0001 Score=69.91 Aligned_cols=396 Identities=12% Similarity=0.092 Sum_probs=223.9
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAI 148 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 148 (535)
....|..|-++..+.+... +|++.|-+ .-|+..|.-++.++.+.|.+++-+..+....+.. -++.+-+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~-eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----ke~~IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVK-EAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCT-TTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----CSTTTTHH
T ss_pred CccHHHHHHHHHHccCchH-HHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccHHH
Confidence 4557888888888887777 77664432 1255556677888888888887777776655543 33455567
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC--------------------CC
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG--------------------YA 208 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~ 208 (535)
|+-+|++.+++.+-++++. .||+.-...+-+-|...|.++.|.-+|..+.... -.
T Consensus 122 Li~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778888877665433322 2555555666677777777777777766553211 01
Q ss_pred cCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH
Q 009424 209 VHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM 288 (535)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 288 (535)
-++.||-.+-.+|...+.+.-|.-.--.+.-.. | -...++..|-..|-+++-+.+++.-.. .-......|+-|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 267789999899998888876655443333221 1 123456677788888888888877662 224567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccCC-------CcchHHHHHHHHHhcCCHHHHHHHH-------------HHH-----
Q 009424 289 ATMYIKMGQVEKAEESLRRVESRITGR-------DRVPYHYLLSLYGSVGKKEEVYRVW-------------NLY----- 343 (535)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~g~~~-------~~~~~~~li~~~~~~g~~~~a~~~~-------------~~m----- 343 (535)
.-.|+|- +.++-.+-++..-.+--.| ....|.-++-.|.+-.+++.|.... .++
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc
Confidence 7778775 3333333333221111111 2445677777777777766653211 111
Q ss_pred --------HhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHh----------cCCCCCHHHHHHHHHHHHHcCChhH
Q 009424 344 --------RSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLS----------VKSSYDPRIANLMMSWYVKEGNFDK 405 (535)
Q Consensus 344 --------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~~~li~~~~~~g~~~~ 405 (535)
......-.+...+-++.++...=+...+.++|...-. ....-+..+-.++-+.|....+++.
T Consensus 349 N~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp CSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 0000111111234445554444444444444443210 0011244555677777777777654
Q ss_pred HH------------HHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHh
Q 009424 406 AE------------AFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEE 473 (535)
Q Consensus 406 A~------------~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~ 473 (535)
-+ .+-+++.+. +-...-..-...|.++++|++++++.++ .++ |.-.+.....
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk-------Dkl------ykDAietAa~ 492 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK-------DSL------YKDAMQYASE 492 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST-------TCC------TTGGGTTTTT
T ss_pred HHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh-------ccc------HHHHHHHHHH
Confidence 32 223333332 1122223334557788888888765442 223 3334445677
Q ss_pred cCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 474 ESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 474 ~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+|+.+-++++++..++.|-. ...-.+|...|
T Consensus 493 S~~~elaeeLL~yFv~~g~~-EcF~a~LytCY 523 (624)
T 3lvg_A 493 SKDTELAEELLQWFLQEEKR-ECFGACLFTCY 523 (624)
T ss_dssp CCCTTHHHHHHHHHHHHCST-HHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHcCch-HHHHHHHHHHh
Confidence 88888888888888876532 22445666666
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.00092 Score=54.10 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=79.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccH----------HHHHHHHHHhHHhccCCCCCCC-HHHHHH
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRI----------LEALSCLKGAFAAEGAKSWRPK-PVNVIN 466 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~~g~~p~-~~~~~~ 466 (535)
.+.+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|+++. .+.|+ ...|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL------~ldP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL------LIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH------HHCTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH------HhCcCcHHHHHH
Confidence 4567789999999999987665 888999888888888764 59999999999 46675 468888
Q ss_pred HHHHHHhcC-----------ChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 467 FFKACEEES-----------DMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 467 ll~a~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
+-.+|...| ++++|.+.|++.++.++... .|..-+++
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~ 133 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Confidence 888888764 89999999999999888754 44333333
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.017 Score=53.73 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=84.7
Q ss_pred cCCCcchHHHHHHHHHh--cC---CHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh---cC--C---HhhHHHHHHHHH
Q 009424 313 TGRDRVPYHYLLSLYGS--VG---KKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR---IG--D---IEGMEKIFEEWL 379 (535)
Q Consensus 313 ~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~g--~---~~~a~~~~~~~~ 379 (535)
.+.+...|...+++... .+ ...+|+.+|++..+..|.-. ..|..+.-++.. .+ . .......+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a-~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT-YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 34556666666655432 22 24677777777777544321 223322222221 01 0 111111111111
Q ss_pred h-cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCC
Q 009424 380 S-VKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWR 458 (535)
Q Consensus 380 ~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~ 458 (535)
. .....++.+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|+++. .+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al------rL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF------NLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcC
Confidence 1 1123467777777777777788888888888888864 677777777788888888888888888888 456
Q ss_pred CCHHHHH
Q 009424 459 PKPVNVI 465 (535)
Q Consensus 459 p~~~~~~ 465 (535)
|...||.
T Consensus 341 P~~~t~~ 347 (372)
T 3ly7_A 341 PGANTLY 347 (372)
T ss_dssp CSHHHHH
T ss_pred CCcChHH
Confidence 7776654
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.031 Score=59.38 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=26.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556666666554432 34455666666666666666666666655
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.80 E-value=0.0038 Score=46.51 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009424 175 DRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239 (535)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 239 (535)
+...|..+...|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666655543 22344555566666666666666666655543
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.78 E-value=0.0094 Score=43.94 Aligned_cols=56 Identities=32% Similarity=0.381 Sum_probs=32.1
Q ss_pred HHHHhcCCHhhHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 360 SSLARIGDIEGMEKIFEEWLSVKSSYDPR-IANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
..+...|++++|...++.+.+..+. +.. .+..+..+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666665554332 344 5555666666666666666666666554
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.75 E-value=0.031 Score=52.02 Aligned_cols=134 Identities=11% Similarity=-0.012 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHHc-----cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHh---hC-----C---HhhHHHH
Q 009424 102 RSLTKWELCRVVKELRKF-----RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAK---VH-----G---VASAEDF 165 (535)
Q Consensus 102 ~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~---~g-----~---~~~A~~~ 165 (535)
.+.+...|...+++.... ..+.+|+.+|+++++.. +-....+..+.-+|.. .+ . +..+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 444666677777665432 33577888888888876 2333444433333321 00 0 0111111
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009424 166 FLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK 240 (535)
Q Consensus 166 f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 240 (535)
...+...+.+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++..+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11111112344455544444444455555555555555543 44444444444455555555555555554444
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.56 E-value=0.0018 Score=48.07 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=38.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNST-SWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
...+.+.|++++|...|++..+.... +.. .|..+...|...|++++|++.|+++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566677777777777777765433 455 67777777777777777777777777
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.22 E-value=0.041 Score=40.09 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 386 DPRIANLMMSWYVKEGN---FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|+..+..+..++...++ .++|..+|++..+..+. ++..+..+...+.+.|++++|+..|+++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555543333 45666666666554443 45555555566666666666666666666
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.17 E-value=0.035 Score=53.68 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHh-----cCCC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 353 LGYHAMISSLARIGDIEGMEKIFEEWLS-----VKSS-YD-PRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 353 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
.+++.+..+|...|++++|..+++++++ .|.. |+ ..+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4556666666666666666666665542 1211 12 23456666667777777777766666543
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.05 E-value=0.03 Score=54.15 Aligned_cols=85 Identities=15% Similarity=0.045 Sum_probs=60.9
Q ss_pred CCHhhHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCC-CCC-HhHHHHHHHH
Q 009424 366 GDIEGMEKIFEEWLSV---KSSYD----PRIANLMMSWYVKEGNFDKAEAFFNSIIE-----EGG-KPN-STSWETLAEG 431 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li~~ 431 (535)
|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+ .|. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4666666666665532 12222 35778889999999999999999988764 232 222 4568888899
Q ss_pred HHccccHHHHHHHHHHhHH
Q 009424 432 HIRERRILEALSCLKGAFA 450 (535)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~ 450 (535)
|...|++++|..+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999988873
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.00 E-value=0.14 Score=54.26 Aligned_cols=47 Identities=19% Similarity=0.044 Sum_probs=26.5
Q ss_pred HHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKM 202 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 202 (535)
....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344556666666655544 24455666666666666666666665554
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.97 E-value=0.059 Score=52.13 Aligned_cols=61 Identities=10% Similarity=-0.046 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009424 354 GYHAMISSLARIGDIEGMEKIFEEWLSV-----KSS-YD-PRIANLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 354 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
+++.+..+|...|++++|..++++++.. |.. |+ ..+++.|...|...|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444444445555544444443321 111 11 2334445555555555555555555443
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.88 E-value=0.042 Score=43.91 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccccHHHHHHHH
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEG---NFDKAEAFFNSIIEEGGKP--NSTSWETLAEGHIRERRILEALSCL 445 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 445 (535)
+++-|.+..+.+. ++..+...+..++++.+ +++++..+|+...+.+ .| +...+-.+.-+|.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444333333 34444444555555544 3335555555554432 11 2333334444455555555555555
Q ss_pred HHhH
Q 009424 446 KGAF 449 (535)
Q Consensus 446 ~~m~ 449 (535)
+.+.
T Consensus 95 ~~lL 98 (152)
T 1pc2_A 95 RGLL 98 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.51 Score=38.68 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=54.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhH
Q 009424 292 YIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGM 371 (535)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 371 (535)
..++|+++.|.++.+.+ .+...|..+-......|+++-|.+.|..... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666666554 3455666666666666666666666665532 34444555556666555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 372 EKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
.++-+.....| -++.-...+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 55544443333 12333344445566666666554
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.85 E-value=0.44 Score=36.72 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=81.9
Q ss_pred hcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHH
Q 009424 257 GSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEV 336 (535)
Q Consensus 257 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 336 (535)
.-.|.++++.++..+..+ ..+..-+|.+|--....-+-+-..++++.+ |--.|.. ..|++...
T Consensus 18 ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDis----------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDLD----------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCGG----------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHH---hhhcCcH----------hhhcHHHH
Confidence 446777788888777775 234455555554444444545455555544 2223332 22333333
Q ss_pred HHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 337 YRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
+..+-.+ ..+...+...++.+...|.-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++.+.-++
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333322 11334455667777777777777777777543 34556777777777888888888877777777776
Q ss_pred CCC
Q 009424 417 GGK 419 (535)
Q Consensus 417 ~~~ 419 (535)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 654
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.71 E-value=0.06 Score=52.10 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=64.7
Q ss_pred hcCCHhhHHHHHHHHHhcC---CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCC-CCC-HhHHHHHH
Q 009424 364 RIGDIEGMEKIFEEWLSVK---SSYD----PRIANLMMSWYVKEGNFDKAEAFFNSIIE-----EGG-KPN-STSWETLA 429 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li 429 (535)
+.|++++|..++++.++.. +.|+ ..+++.+..+|...|++++|+.++++..+ .|. .|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3456666666666665421 1122 35678888888889999999998887763 222 122 45578888
Q ss_pred HHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHH
Q 009424 430 EGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNV 464 (535)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~ 464 (535)
..|...|++++|+.+++++.+.. ..-+-||....
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i~-~~~lG~~Hp~~ 412 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDIM-RVTHGREHSLI 412 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-HHHTCTTSHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH-HHhcCCCChHH
Confidence 88899999999998888877322 22234554433
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.62 E-value=0.1 Score=38.00 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=62.8
Q ss_pred CCHhHHHHHHHHHHcccc---HHHHHHHHHHhHHhccCCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCh
Q 009424 420 PNSTSWETLAEGHIRERR---ILEALSCLKGAFAAEGAKSWRPKP-VNVINFFKACEEESDMGSKEAFVALLRQPGYRKE 495 (535)
Q Consensus 420 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 495 (535)
.|...+..+..++...++ .++|..+++++. .+.|+. ..+..+-..+...|++++|...|+++.+..+. +
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL------~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL------QLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-N 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-T
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------HHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 467788888888865554 799999999999 456755 45666667889999999999999999999888 5
Q ss_pred hhHHHHHHHhHh
Q 009424 496 KDYMSLIGLTDE 507 (535)
Q Consensus 496 ~~~~~L~~~y~~ 507 (535)
.....+.+...+
T Consensus 77 ~~~~~i~~~I~~ 88 (93)
T 3bee_A 77 LDRVTIIESINK 88 (93)
T ss_dssp CCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 556666665544
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.28 E-value=0.16 Score=40.55 Aligned_cols=89 Identities=16% Similarity=0.079 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc---cHHHHHHHHHHhHHhccCCCCCC-C-HHHHHHHHHHHHhcCCh
Q 009424 403 FDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER---RILEALSCLKGAFAAEGAKSWRP-K-PVNVINFFKACEEESDM 477 (535)
Q Consensus 403 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~g~~p-~-~~~~~~ll~a~~~~g~~ 477 (535)
+..+++-|.+..+.|. ++..+.-.+..++++.+ +.++++.++++.. +.. .| + ...+-.+--++.+.|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll----~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL----PKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH----HHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hcC-CccchHHHHHHHHHHHHHccCH
Confidence 4556677777666555 68888888899999987 7779999999999 332 35 2 34455555688999999
Q ss_pred hhHHHHHHHHhcCCCCChhh
Q 009424 478 GSKEAFVALLRQPGYRKEKD 497 (535)
Q Consensus 478 ~~a~~~~~~~~~~~~~~~~~ 497 (535)
++|++.++.+++..|.+...
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999887653
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.97 E-value=0.21 Score=37.06 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEG------GKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
-+..+...+.+.|+++.|...|+...+.- -.+....+..+..+|.+.|++++|+.+++++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444455555555555555555444310 11234445555555555555555555555555
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.65 E-value=1.5 Score=35.88 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=60.6
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhH
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDE 229 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 229 (535)
.+....+|+++.|.++.+.+ .+...|..|-....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34455666666666666554 2566677777777777777777777766433 3445555555666655
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhH
Q 009424 230 VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMK 273 (535)
Q Consensus 230 a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 273 (535)
-.++-+.....|- ++....++.-.|+++++.+++.+..
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5555444444431 3334444555666666666665443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.55 E-value=0.28 Score=36.38 Aligned_cols=78 Identities=10% Similarity=-0.026 Sum_probs=61.1
Q ss_pred CHhHHHHHHHHHHccccHHHHHHHHHHhHHhccCC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhH
Q 009424 421 NSTSWETLAEGHIRERRILEALSCLKGAFAAEGAK--SWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDY 498 (535)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 498 (535)
+..-+-.|...+.+.|+++.|..+|+.+.+..+.. .-.+....+..+..++.+.|+++.|...++++.+..|......
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44555678888999999999999999998432111 1123456788888999999999999999999999888876643
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.41 E-value=0.28 Score=43.75 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhc-----CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCC
Q 009424 354 GYHAMISSLARI-----GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKE-GNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 354 ~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~ 418 (535)
.|..+...|.+. |+.++|.+.|++.++.++.-+..++....+.+++. |+.+++.+.+++.....+
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 444444444442 55555555555555544332344445555555552 555555555555555433
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.30 E-value=0.39 Score=42.86 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=55.8
Q ss_pred HhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhc-CC
Q 009424 262 TEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIK-----MGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSV-GK 332 (535)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~ 332 (535)
...|+..+++..+ +.|+ ...|..|...|.+ -|+.++|.+.|++..+.++.-+..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3455666666654 3555 4567777777777 377788888887776643322355666666766664 77
Q ss_pred HHHHHHHHHHHHhhCCC
Q 009424 333 KEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~ 349 (535)
.+++.+.+++.....+.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777776555
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=4.3 Score=39.20 Aligned_cols=187 Identities=11% Similarity=0.064 Sum_probs=84.6
Q ss_pred CCHhHHHHHHHHHHHC-----CCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH----hcC
Q 009424 190 RMRGNAELLIDKMRDK-----GYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEK-GIRLDVYSYNIWLSSC----GSQ 259 (535)
Q Consensus 190 g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~pd~~~~~~ll~~~----~~~ 259 (535)
|++++|++.+-.+.+. +..-.......++..|...|+++...+.+..+.+. |..+... ..+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcC
Confidence 5677777766555432 12222344566777777777777776666555432 3222222 2222222 122
Q ss_pred CCHhH--HHHHHHHhHh--CCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC-----cchHHHHHHHH
Q 009424 260 GSTEK--MEGVFELMKV--DKAVNPN---WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRD-----RVPYHYLLSLY 327 (535)
Q Consensus 260 g~~~~--a~~~~~~~~~--~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~ 327 (535)
...+. -..+.+.... .+.+-.. ......|...|...|++.+|.+++..+...-...+ ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1111111110 0001111 11234455566666666666666666643222222 12344445556
Q ss_pred HhcCCHHHHHHHHHHHHh---hCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 328 GSVGKKEEVYRVWNLYRS---VFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 328 ~~~g~~~~a~~~~~~m~~---~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
...+++..|..+++++.. ....++. ..+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 666666666666665532 1111111 23444455555555655555555444
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.12 E-value=0.6 Score=35.77 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHH---HHHHHHHhHHhccCCCCCC-CHHHHH-HHHHHHHhcCC
Q 009424 402 NFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILE---ALSCLKGAFAAEGAKSWRP-KPVNVI-NFFKACEEESD 476 (535)
Q Consensus 402 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~g~~p-~~~~~~-~ll~a~~~~g~ 476 (535)
.+..+++-|.+....|. |+..+--.+..++++..+..+ ++.++.+.. ..+ .| +..-+. .+.-++.+.|+
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~----~~~-~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL----PKG-SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT----TTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hcC-CcchHHHHHHHHHHHHHHhhh
Confidence 34445555555544444 566666666677776665444 777777776 332 23 223333 33346777888
Q ss_pred hhhHHHHHHHHhcCCCCChh
Q 009424 477 MGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 477 ~~~a~~~~~~~~~~~~~~~~ 496 (535)
++.|++.++.+++..|.+..
T Consensus 90 Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHH
Confidence 88888888888877776654
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.08 E-value=0.77 Score=36.23 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009424 366 GDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK 419 (535)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 419 (535)
+++++|+++|+.+++.+-.. ..+|.....--.+.|++..|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665543232 555555555556666666666666666665555
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.76 E-value=1.8 Score=33.40 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=88.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009424 222 MKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKA 301 (535)
Q Consensus 222 ~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (535)
.-.|..++..++..+..+.. +..-||-+|--....-+-+...++++.+-+-. | ...||++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHH
Confidence 34577777777777776653 45556666655555566666666666665422 2 2345555555
Q ss_pred HHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhc
Q 009424 302 EESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSV 381 (535)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 381 (535)
...+-.+ ..+.......++.....|+-++-.+++..+... ..|+......+..||.+.|+..++.+++.++-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5555443 234555566677777788888877777775332 3334445567778888888888888888888777
Q ss_pred CCC
Q 009424 382 KSS 384 (535)
Q Consensus 382 ~~~ 384 (535)
|.+
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 753
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.67 E-value=0.93 Score=35.78 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 401 GNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 401 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+++++|.++|+.+...+-+- ...|.....-=.++|+...|.+++.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 45555555555554431111 4445444455555566666666666655
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.27 E-value=0.88 Score=32.91 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+.-+..+-++.+. ...+.|++....+.++||.+..|+..|.++++-+....-....+|..+++-.
T Consensus 25 D~~e~rrglN~l~----~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLV----GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHT----TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHh----ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 4556667777777 7788899999999999999999999999999888744323344677766654
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.75 E-value=7.4 Score=37.55 Aligned_cols=55 Identities=5% Similarity=0.052 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCC
Q 009424 225 KEYDEVESMVSEMKEK-----GIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVN 279 (535)
Q Consensus 225 g~~~~a~~~~~~m~~~-----g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 279 (535)
|++++|++.+-.+.+. +..........++..|...|+++...+.+..+.+..|..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql 89 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL 89 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh
Confidence 6778888777666542 233455667778888888888888877777776655443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.82 E-value=0.78 Score=35.13 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=42.4
Q ss_pred CHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHcC-CCCCHhHHHHHHHHHHccccHHHHH
Q 009424 367 DIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDK---AEAFFNSIIEEG-GKPNSTSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~ 442 (535)
.+..+++-+......|. ++..+-..+..++.+..+..+ ++.+++.+...+ +.-.....-.+.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444444333 455555555556666555444 555555555432 1012233334455666667777777
Q ss_pred HHHHHhH
Q 009424 443 SCLKGAF 449 (535)
Q Consensus 443 ~~~~~m~ 449 (535)
+.++.+.
T Consensus 95 ~~~~~lL 101 (126)
T 1nzn_A 95 KYVRGLL 101 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766666
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.77 E-value=2.1 Score=44.19 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=42.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
+-+...|+++.|+++.++....-+. +-.+|..|...|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455678888888888888775333 57888888888888888888888888774
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.09 E-value=6.1e-05 Score=71.41 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLA 363 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 363 (535)
+|+.|..++.+.|++.+|.+.|-+ ..|...|..+|.+..+.|.+++-+..+...++..-.|.. =+.++-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHH
Confidence 455555555555555555444421 134445555666666666666655555544443222222 235556666
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--------------------CCCCCHh
Q 009424 364 RIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE--------------------GGKPNST 423 (535)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p~~~ 423 (535)
+.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+... .-.-+..
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 6665544333322 234444444555555555555555444432210 0012556
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHH
Q 009424 424 SWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIG 503 (535)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~ 503 (535)
||..+-.+|...+.+.-|.-.--.+. +.|| -...++.-|-..|-+++-..+++.-....--.-..++-|.=
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI-------vhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaI 271 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV-------VHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 271 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH-------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc-------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 66666666666666665544444443 2222 22334455666677777776666655322222225666666
Q ss_pred HhHh
Q 009424 504 LTDE 507 (535)
Q Consensus 504 ~y~~ 507 (535)
.|++
T Consensus 272 LYsK 275 (624)
T 3lvg_A 272 LYSK 275 (624)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6644
No 241
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.62 E-value=2.2 Score=32.72 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHHh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLT 505 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~y 505 (535)
+.-+..+-++.+. ...+.|++....+.++||.+..|+..|.++++-+....-.....|..+++-.
T Consensus 68 D~wElrrglN~l~----~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLV----GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHT----TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHh----ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 3445566667777 7788999999999999999999999999999988744323344777766654
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.30 E-value=21 Score=37.85 Aligned_cols=310 Identities=9% Similarity=-0.039 Sum_probs=152.2
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCcCc--chHHHHHHHHHhcCChhHHHHHHHHHHHcCC--C-----CCHHHHHHHHHHH
Q 009424 186 YVRARMRGNAELLIDKMRDKGYAVHS--LPYNVMMTLYMKIKEYDEVESMVSEMKEKGI--R-----LDVYSYNIWLSSC 256 (535)
Q Consensus 186 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~-----pd~~~~~~ll~~~ 256 (535)
....|+.++++.+++.....+-..+. ..=..+.-+....|..+++.+++.......- . +....-.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34455666665555544331100111 1222233345556666677777666554321 0 1111122222223
Q ss_pred hcCCCH-hHHHHHHHHhHhCCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH--HHHh
Q 009424 257 GSQGST-EKMEGVFELMKVDKAVNPNWTT--FS--TMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS--LYGS 329 (535)
Q Consensus 257 ~~~g~~-~~a~~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~ 329 (535)
+-.|.- +++...+..+..+ .+..+ .. +|...|.-.|+-+....++..+.+. .+......+.- ++..
T Consensus 464 a~~GS~~eev~e~L~~~L~d----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYN----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HhcCCCCHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 223321 2444444444432 12221 12 2223344567777777777766542 12223333333 3446
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhHH---HHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVTNLGYH---AMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKA 406 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 406 (535)
.|+.+.+..+.+.+... ..|. .-|. ++.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 78888887777777653 2222 2232 33456677788877777888877542 11232222222333446777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccccH-HHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhc--CC-------
Q 009424 407 EAFFNSIIEEGGKPNSTSWETLAEGHIRERRI-LEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEE--SD------- 476 (535)
Q Consensus 407 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~--g~------- 476 (535)
.++++.+.+.+ .|.+..-..+.-|....|.. .+|+.++..+. -.+|..+-...+.+.... |.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~-------~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT-------KDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH-------TCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 77777665542 34454445555555555554 67888888888 244555544444444333 22
Q ss_pred hhhHHHHHHHHhc-CCCCChh-hHHHHHHHhHhhhhccc
Q 009424 477 MGSKEAFVALLRQ-PGYRKEK-DYMSLIGLTDEAVAENN 513 (535)
Q Consensus 477 ~~~a~~~~~~~~~-~~~~~~~-~~~~L~~~y~~~~~~~~ 513 (535)
+...++.+..... ....+.. ....+..+...+|...-
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~ 724 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNV 724 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTE
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCce
Confidence 2223333333332 2333444 55677777777776654
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.21 E-value=1.1 Score=42.62 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhHHh-ccCCCCCCCHHHH
Q 009424 389 IANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAA-EGAKSWRPKPVNV 464 (535)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~g~~p~~~~~ 464 (535)
+...++..+...|+.++|...+..+....+- +...|..+|.+|.+.|+..+|++.|+...+. ..+.|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445677788889999999888888776444 7888999999999999999999998887632 1245888887654
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.23 E-value=3.3 Score=42.75 Aligned_cols=125 Identities=16% Similarity=0.081 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCC-HhHHHHHHHHHHHCCCCcCcchH--HHHHHHHHhcC-ChhHHHHHHHHHHHc------CCCC-CHH-
Q 009424 180 GALLNAYVRARM-RGNAELLIDKMRDKGYAVHSLPY--NVMMTLYMKIK-EYDEVESMVSEMKEK------GIRL-DVY- 247 (535)
Q Consensus 180 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g-~~~~a~~~~~~m~~~------g~~p-d~~- 247 (535)
..++..+...++ .+.|.++|+++.... |...++ ..++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444444555 577899999888763 322222 22333332222 223455555554321 1111 111
Q ss_pred ---------HHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 248 ---------SYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRV 308 (535)
Q Consensus 248 ---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 308 (535)
....-.+-|...|+++.|.++-++...- .+.+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222233466789999999999998853 2556779999999999999999999999887
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.30 E-value=5.7 Score=28.65 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=58.0
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLI 199 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (535)
..-++|..|-+++...+ . ...+.-.-+..+...|++++|..+.+...- ||...|-+|-.. +.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLAY--PDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCC--GGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHHH--hcccHHHHHHHH
Confidence 35678888888888776 2 333333445567788999999999988886 899999887653 677777777777
Q ss_pred HHHHHCC
Q 009424 200 DKMRDKG 206 (535)
Q Consensus 200 ~~m~~~g 206 (535)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7777776
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.25 E-value=2.3 Score=40.25 Aligned_cols=71 Identities=8% Similarity=0.028 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHh----CCCCCCCHHHH
Q 009424 214 YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKV----DKAVNPNWTTF 285 (535)
Q Consensus 214 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 285 (535)
...++..+...|++++++..+..+.... +.+...+..+|.++...|+..+|.+.|+...+ +.|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445566666666776666666665543 34666666677777777777776666665442 34666666543
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.52 E-value=18 Score=39.76 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEWLSVKSSYDP----RIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 430 (535)
|.-++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+..... -......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 455666666666666666666555543222121 2456666666667777777666666655322 2344555555
Q ss_pred HHHccc
Q 009424 431 GHIRER 436 (535)
Q Consensus 431 ~~~~~g 436 (535)
.++..|
T Consensus 980 ~lce~~ 985 (1139)
T 4fhn_B 980 QLTKQG 985 (1139)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 444443
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.49 E-value=5.4 Score=28.72 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=58.5
Q ss_pred cChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 009424 120 RRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLI 199 (535)
Q Consensus 120 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (535)
..-++|..|-+++...+ . ...+.-.-+..+...|++++|..+.+...- ||...|-+|-. .+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNPW--PALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC--GGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHHHHH
Confidence 35678888888888776 2 333333445567788999999999888886 99999988765 4778878887777
Q ss_pred HHHHHCC
Q 009424 200 DKMRDKG 206 (535)
Q Consensus 200 ~~m~~~g 206 (535)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7777776
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.31 E-value=5.8 Score=28.73 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+.++-++.+....+.|++.+..+.+.+|.+.+++..|.++|+..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444555556666666666666666666666666666554
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.35 E-value=9.1 Score=30.77 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=41.4
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHccChHHHHHHHHHHHhc
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKG-GRSLTK-------WELCRVVKELRKFRRYKHALEVYDWMNNR 135 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~-g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 135 (535)
-.-++.+...+.++ .|.-+.+-+... +..|+. .++..+..++...|.+..|...|.+.++.
T Consensus 24 ~dqik~L~d~~LY~-sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 24 IDHVRDMAAAGLHS-NVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHH-HHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34566777788888 777776665443 233432 24556667888889999999999887653
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.02 E-value=36 Score=37.43 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHH
Q 009424 249 YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNP-N--WTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLS 325 (535)
Q Consensus 249 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 325 (535)
|..++..+-+.+.++.+.++-....+..+-.+ + ...|..+...+...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 45555566666666666655554443211111 1 114566666666677777776666666543222 234455555
Q ss_pred HHHhcCCHHHH
Q 009424 326 LYGSVGKKEEV 336 (535)
Q Consensus 326 ~~~~~g~~~~a 336 (535)
..+..|..+.-
T Consensus 980 ~lce~~~~~~L 990 (1139)
T 4fhn_B 980 QLTKQGKINQL 990 (1139)
T ss_dssp HHHHHCCHHHH
T ss_pred HHHhCCChhhh
Confidence 55555554443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.93 E-value=14 Score=28.39 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 385 YDPRIANLMMSWYVKEGNF---DKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
|++.+--.+..++.+..+. .+++.+++.+...+..-....+-.+.-|+.+.|++++|.++.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444445555554433 2345555555443321123344444555555555555555555555
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.87 E-value=6 Score=34.97 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=8.5
Q ss_pred HHHHHhhCCHhhHHHHHhh
Q 009424 150 LDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~ 168 (535)
+...+..|+.+-...+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344444555444444443
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.55 E-value=16 Score=28.08 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCCCCHhHHHHHHHHHHccc---cHHHHHHHHHHhHHhccCCCCCC-CH-HHHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 009424 417 GGKPNSTSWETLAEGHIRER---RILEALSCLKGAFAAEGAKSWRP-KP-VNVINFFKACEEESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 417 ~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~g~~p-~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 491 (535)
+..|+..+--.+..++++.. +..+++.++.+.. +.+ | .. ..+-.+.-++.+.|+++.|+++.+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~----~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY----KEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH----HHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 44566666556666776655 4567999999988 333 4 23 344455568999999999999999999999
Q ss_pred CCChh
Q 009424 492 YRKEK 496 (535)
Q Consensus 492 ~~~~~ 496 (535)
|.+..
T Consensus 109 P~N~Q 113 (134)
T 3o48_A 109 RNNKQ 113 (134)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 88766
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.72 E-value=5.8 Score=31.91 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 009424 391 NLMMSWYVKEGNFDKAEAFFNSII 414 (535)
Q Consensus 391 ~~li~~~~~~g~~~~A~~~~~~m~ 414 (535)
--+..+|.+.|+.++|+.+++.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335555666666666666655543
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.42 E-value=12 Score=28.84 Aligned_cols=46 Identities=11% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 371 MEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+..+.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444444445555666666666666666666666666666666543
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.05 E-value=37 Score=30.70 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHH
Q 009424 386 DPRIANLMMSWYVKEGNFDKAEAFFN 411 (535)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~ 411 (535)
|+.....+...|.+.|++.+|+.-|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 67777888888888888888877653
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.33 E-value=21 Score=34.17 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCchh--hHH
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVESRITGRD--RVPYHYLLSLYGSVGKKEEVYRVWNLYRSV---FPGVTNL--GYH 356 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~--~~~ 356 (535)
+...+...|.+.|+++.|.+.|.++......+. ...+-..|+.+...+++..+...+.+.... +..++.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445566667777777777777777665433322 224555666667777777777777666442 2222221 011
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHh
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
.-...+...+++..|-..|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111222345667777666665543
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.35 E-value=30 Score=30.40 Aligned_cols=117 Identities=9% Similarity=0.125 Sum_probs=72.4
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHccccH
Q 009424 361 SLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGK--PNSTSWETLAEGHIRERRI 438 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~ 438 (535)
...+.|+++++++....-++..+. |...-..++..+|-.|+++.|.+-++...+.... |-...|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 455778888888888888777765 8888888899999999999998888887764221 112233333322
Q ss_pred HHHHHHHHHhHHhccCCCCCC----CHHHH-HHHHHHH--HhcCChhhHHHHHHHHhcCCC
Q 009424 439 LEALSCLKGAFAAEGAKSWRP----KPVNV-INFFKAC--EEESDMGSKEAFVALLRQPGY 492 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p----~~~~~-~~ll~a~--~~~g~~~~a~~~~~~~~~~~~ 492 (535)
...-.+.. ..+-.| .+.-| ..++.+. ...|+.++|.++-+.+.+.-+
T Consensus 78 ---E~~R~~vf----aG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 78 ---AQARKDFA----QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp ---HHHHHHHT----TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHH----cCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 12222222 222222 12223 3444443 456899999998888866543
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.21 E-value=9.2 Score=33.57 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=45.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccccHHHHHHHHHHhH
Q 009424 395 SWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (535)
....+.|++++|+.....-++..+. |...-..++..+|-.|+|+.|.+-++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456788999999988888876655 88888899999999999999999988888
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.09 E-value=26 Score=33.47 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHH-
Q 009424 212 LPYNVMMTLYMKIKEYDEVESMVSEMKEKGI--RLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTM- 288 (535)
Q Consensus 212 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 288 (535)
.++..+...|.+.|++++|.+.|.++...-. .--...+-.+++.+...+++..+.....++.....-.+|....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677788889999999999999998887532 2234566677888888889988888888765321112232222211
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHh
Q 009424 289 ---ATMYIKMGQVEKAEESLRRVES 310 (535)
Q Consensus 289 ---i~~~~~~g~~~~A~~~~~~m~~ 310 (535)
.-.+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1113346777777777766543
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.99 E-value=12 Score=32.93 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=6.0
Q ss_pred HHhhCCHhhHHHHHh
Q 009424 153 IAKVHGVASAEDFFL 167 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~ 167 (535)
.++.|+++....+++
T Consensus 12 A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 334444444443333
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.98 E-value=54 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.037 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHH
Q 009424 245 DVYSYNIWLSSCGSQGSTEKMEGVF 269 (535)
Q Consensus 245 d~~~~~~ll~~~~~~g~~~~a~~~~ 269 (535)
|......+...|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4444455555555555555555544
No 264
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.57 E-value=10 Score=32.48 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=12.4
Q ss_pred HHHHHccChHHHHHHHHHHHhcC
Q 009424 114 KELRKFRRYKHALEVYDWMNNRG 136 (535)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~g 136 (535)
...+..|+.+....+++...+.|
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 33445566666555555555444
No 265
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=72.28 E-value=13 Score=35.48 Aligned_cols=291 Identities=12% Similarity=0.055 Sum_probs=130.7
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCC
Q 009424 93 VLNDWEKGGRSLTKWE--LCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLP 170 (535)
Q Consensus 93 ~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 170 (535)
+++.+.+.|..|+... ..+.+...+..|+.+-+.-++ +.|..+..........+...++.|+.+-..-+++.-.
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 104 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC
Confidence 5555556666654321 123455556667766554444 3441121111222344566677888887777777643
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 009424 171 DT-LKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVH---SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 171 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
.. ..+..-++ .+...++.|+.+-+..+++ .+..++ ..-++ .+...+..|+.+- ++.+.+.|..++.
T Consensus 105 ~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~ 174 (437)
T 1n11_A 105 NPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGFT-PLHVAAKYGKVRV----AELLLERDAHPNA 174 (437)
T ss_dssp CTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTC
T ss_pred CCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCC
Confidence 31 12222222 2334456677665555554 332222 11122 3444556666543 4444555654443
Q ss_pred HH--HHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc---
Q 009424 247 YS--YNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW---TTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV--- 318 (535)
Q Consensus 247 ~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--- 318 (535)
.. -.+.+...+..|+.+-...+++. |..++. .-+ +.+...++.|+.+-+..+++ .|..++..
T Consensus 175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~ 244 (437)
T 1n11_A 175 AGKNGLTPLHVAVHHNNLDIVKLLLPR-----GGSPHSPAWNGY-TPLHIAAKQNQVEVARSLLQ----YGGSANAESVQ 244 (437)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGG-----TCCSCCCCTTCC-CHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCC
Confidence 21 11233444566666544443322 222221 112 22334556777665554443 44433322
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH--HHHHH
Q 009424 319 PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR--IANLM 393 (535)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l 393 (535)
..+. +...+..|..+-+..++ +.+..++. ... ..+...+..|+.+.+..+++ .|..++.. .-.+.
T Consensus 245 g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~ 314 (437)
T 1n11_A 245 GVTP-LHLAAQEGHAEMVALLL----SKQANGNLGNKSGL-TPLHLVAQEGHVPVADVLIK----HGVMVDATTRMGYTP 314 (437)
T ss_dssp CCCH-HHHHHHTTCHHHHHHHH----TTTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHH----HTCCTTCCCSSCCCH
T ss_pred CCCH-HHHHHHCCCHHHHHHHH----hcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHh----CCccCCCCCCCCCCH
Confidence 2222 33344566655444433 33333321 111 22333446677665555544 34333221 11123
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPN 421 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~ 421 (535)
+...+..|+.+-+. .+.+.|..++
T Consensus 315 L~~A~~~g~~~~v~----~Ll~~gad~n 338 (437)
T 1n11_A 315 LHVASHYGNIKLVK----FLLQHQADVN 338 (437)
T ss_dssp HHHHHHSSCSHHHH----HHHHTTCCTT
T ss_pred HHHHHHcCcHHHHH----HHHhcCCCCC
Confidence 44445667765443 3444455443
No 266
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=71.63 E-value=33 Score=31.14 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=6.7
Q ss_pred HHhhCCHhhHHHHHh
Q 009424 153 IAKVHGVASAEDFFL 167 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~ 167 (535)
.+..|+.+-++-+++
T Consensus 66 A~~~g~~~iv~~Ll~ 80 (337)
T 4g8k_A 66 AVQMSREDIVELLLR 80 (337)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344444444444444
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.90 E-value=63 Score=29.48 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=85.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHH
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESM----VSEMKEKGIRLDVYSYNIWLS 254 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~pd~~~~~~ll~ 254 (535)
|.++..-|.+.+++++|++++-.-. ..+.+.|+...|-++ .+-..+.++++|.....-++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455566777777777777654321 123344444443333 344455667777777666666
Q ss_pred HHhcCCCHhHH-HHHHHHhH----hC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHH
Q 009424 255 SCGSQGSTEKM-EGVFELMK----VD-KAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYG 328 (535)
Q Consensus 255 ~~~~~g~~~~a-~~~~~~~~----~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (535)
.+.....-+-. .++.+.+. +. ..-.-|......+...|.+.+++.+|..-|- .|-.+....+..++--+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 66655432111 11222221 11 1123466677777788888888888877763 122222345544443333
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 009424 329 SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWL 379 (535)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 379 (535)
..+...+ .+.+ ..-.+--|...+++..|..+++...
T Consensus 179 ~~~~~~e--------------~dlf-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHT--------------APLY-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGG--------------HHHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCcc--------------HHHH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3222111 1111 2233334556677777777665544
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.39 E-value=45 Score=30.79 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCC--HhhHHHHHHHHHhcCCC
Q 009424 320 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGD--IEGMEKIFEEWLSVKSS 384 (535)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~ 384 (535)
.+.++.-|...|+.++|.+.++++..-.. ...+....+..++-+.++ .+...+++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 45667777777777777777777743111 112334444444444332 34455666666655544
No 269
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=69.80 E-value=48 Score=30.03 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHccChHHHHHHHHHHHhcC
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWE---LCRVVKELRKFRRYKHALEVYDWMNNRG 136 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g 136 (535)
++.+-..++.|+.+ +.+.+++.|..+|... -.+-|...+..|+.+ +.+.+++.|
T Consensus 26 ~t~L~~Av~~g~~~-----~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~g 82 (337)
T 4g8k_A 26 NHLLIKAVQNEDVD-----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHG 82 (337)
T ss_dssp HHHHHHHHHTTCHH-----HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTT
T ss_pred ChHHHHHHHcCCHH-----HHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHH----HHHHHHHcC
Confidence 34444455667665 3444555676664321 112344445667655 444455566
No 270
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=69.45 E-value=16 Score=31.13 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=8.2
Q ss_pred HHHhcCCHhhHHHHHHH
Q 009424 361 SLARIGDIEGMEKIFEE 377 (535)
Q Consensus 361 ~~~~~g~~~~a~~~~~~ 377 (535)
...+.|+.+.+..+++.
T Consensus 216 ~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 33445555555444443
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.92 E-value=77 Score=29.74 Aligned_cols=168 Identities=7% Similarity=0.062 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCC---HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcccCCCcchHH
Q 009424 246 VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPN---WTTFSTMATMYIKMG-QVEKAEESLRRVESRITGRDRVPYH 321 (535)
Q Consensus 246 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~ 321 (535)
......|...|.+.|+.++..+++.....-.+.-+- .-....||+.+.... ..+.-.++..+..+..- -+..+|-
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345667778888888888888888777632221222 223556777776643 33333444444332111 1223341
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hhHHHHHHHHHhcCCHhhHHHHHHHHHhcC--CCCCHH
Q 009424 322 ------YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTN-----LGYHAMISSLARIGDIEGMEKIFEEWLSVK--SSYDPR 388 (535)
Q Consensus 322 ------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~ 388 (535)
-+...|...|++.+|..++.++.+.-...|. ..+..-+..|...+++.++...+....... +.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 4667778888888888887777663222221 345566667777777777777777665332 223443
Q ss_pred HHHHH----HHHHH-HcCChhHHHHHHHHHH
Q 009424 389 IANLM----MSWYV-KEGNFDKAEAFFNSII 414 (535)
Q Consensus 389 ~~~~l----i~~~~-~~g~~~~A~~~~~~m~ 414 (535)
+...+ ...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 32221 22334 5677777777665543
No 272
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.49 E-value=40 Score=26.27 Aligned_cols=21 Identities=14% Similarity=0.059 Sum_probs=9.2
Q ss_pred HHHHHccccHHHHHHHHHHhH
Q 009424 429 AEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~ 449 (535)
.-++.+.|++++|.++.+.+.
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.19 E-value=36 Score=28.84 Aligned_cols=84 Identities=8% Similarity=-0.005 Sum_probs=40.1
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCcCcch--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhcC
Q 009424 184 NAYVRARMRGNAELLIDKMRDKGYAVHSLP--YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYS--YNIWLSSCGSQ 259 (535)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~--~~~ll~~~~~~ 259 (535)
...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 344566777777777766666655444321 112333444555543 3344445554443211 11223333455
Q ss_pred CCHhHHHHHHHH
Q 009424 260 GSTEKMEGVFEL 271 (535)
Q Consensus 260 g~~~~a~~~~~~ 271 (535)
|+.+-...+++.
T Consensus 90 ~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 90 RSPTCLRALLDS 101 (241)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 555555555444
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=67.06 E-value=43 Score=26.10 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=41.6
Q ss_pred CCCHhHHHHHHHHHHccc---cHHHHHHHHHHhHHhccCCCCCC-CHHHHHH-HHHHHHhcCChhhHHHHHHHHhcCCCC
Q 009424 419 KPNSTSWETLAEGHIRER---RILEALSCLKGAFAAEGAKSWRP-KPVNVIN-FFKACEEESDMGSKEAFVALLRQPGYR 493 (535)
Q Consensus 419 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~g~~p-~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~ 493 (535)
.|+..+--.+..++.+.. +..+++.++++.. .. .| +..-+.. +.-++.+.|++++|+++.+.+++..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~----~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY----KE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH----HH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 345544444555555443 3445666777666 21 23 2333333 334677777888888887777777776
Q ss_pred Chh
Q 009424 494 KEK 496 (535)
Q Consensus 494 ~~~ 496 (535)
+..
T Consensus 110 n~Q 112 (144)
T 1y8m_A 110 NKQ 112 (144)
T ss_dssp CHH
T ss_pred cHH
Confidence 654
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.56 E-value=53 Score=27.32 Aligned_cols=53 Identities=11% Similarity=-0.070 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhCCCCch-hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC
Q 009424 333 KEEVYRVWNLYRSVFPGVTN-LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSY 385 (535)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 385 (535)
..++.++|..|...++.... .-|......+...|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555554444333 334444444555555555555555555554444
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.10 E-value=1e+02 Score=28.96 Aligned_cols=168 Identities=8% Similarity=-0.092 Sum_probs=108.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHhcCC-CHhHHHHHHHHhHhCCCCCCCHH--
Q 009424 211 SLPYNVMMTLYMKIKEYDEVESMVSEMKEK-GIRL---DVYSYNIWLSSCGSQG-STEKMEGVFELMKVDKAVNPNWT-- 283 (535)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---d~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~-- 283 (535)
..+...|...|.+.|+.++..+++.....- +.-| .......+++.+.... ..+.-.++..+..+...-..-.+
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999998876442 1112 2234667888887743 34444444444443110011222
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcc-----hHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhh
Q 009424 284 --TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRV-----PYHYLLSLYGSVGKKEEVYRVWNLYRSVF--PGVTNLG 354 (535)
Q Consensus 284 --~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~ 354 (535)
+-.-++..|...|++.+|..++.++.+.--..|.. .+-.-+..|...++..++...+....... +.++...
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 12357899999999999999999997754343433 35556778899999999999998876532 2133222
Q ss_pred HHHHHH-----HHH-hcCCHhhHHHHHHHHH
Q 009424 355 YHAMIS-----SLA-RIGDIEGMEKIFEEWL 379 (535)
Q Consensus 355 ~~~ll~-----~~~-~~g~~~~a~~~~~~~~ 379 (535)
.+.+. .+. ..+++..|...|-+..
T Consensus 179 -~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 -QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp -HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 23333 344 6889999988887654
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.99 E-value=42 Score=30.99 Aligned_cols=26 Identities=4% Similarity=0.211 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMR 203 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~ 203 (535)
...++|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34556666666666666666666653
No 278
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.49 E-value=18 Score=30.66 Aligned_cols=53 Identities=8% Similarity=0.030 Sum_probs=24.6
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHH
Q 009424 359 ISSLARIGDIEGMEKIFEEWLSVKSSYDPRI--ANLMMSWYVKEGNFDKAEAFFNSIIE 415 (535)
Q Consensus 359 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 415 (535)
+...+..|+.+.+..+++ .|..++... -.+.+....+.|+.+-+.-+++...+
T Consensus 181 L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 334445566654444443 344333211 11234555666777666665554443
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.59 E-value=82 Score=26.19 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 009424 178 VYGALLNAYVRARMRGNAELLIDKMRDKGYAVHS-LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
.|-..++.+ .++...++.++|..|...|+--.. .-|......+-..|++.+|.++|+.-.+.+-+|-.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 455544443 234466888899988887765443 34666677777888999999998888888766643
No 280
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=56.82 E-value=14 Score=31.50 Aligned_cols=19 Identities=0% Similarity=-0.146 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 009424 327 YGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 327 ~~~~g~~~~a~~~~~~m~~ 345 (535)
.+..|+...++++.+.+++
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555543
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.70 E-value=49 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=10.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 009424 392 LMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~m 413 (535)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444445555555544444
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=56.26 E-value=24 Score=28.99 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=6.2
Q ss_pred HhhCCHhhHHHHHh
Q 009424 154 AKVHGVASAEDFFL 167 (535)
Q Consensus 154 ~~~g~~~~A~~~f~ 167 (535)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 33444444444444
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.09 E-value=36 Score=30.15 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=7.6
Q ss_pred HHHHHhhCCHhhHHHHHh
Q 009424 150 LDLIAKVHGVASAEDFFL 167 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~ 167 (535)
+...+..|+.+-+..+++
T Consensus 66 L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333344444444444443
No 284
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=53.44 E-value=30 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=11.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccCCC
Q 009424 290 TMYIKMGQVEKAEESLRRVESRITGRD 316 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~~~ 316 (535)
...++.|+.+-+.- +.+.|..++
T Consensus 177 ~~A~~~~~~~~v~~----Ll~~ga~~~ 199 (231)
T 3aji_A 177 HLACDEERVEEAKF----LVTQGASIY 199 (231)
T ss_dssp HHHHHTTCHHHHHH----HHHTTCCSC
T ss_pred HHHHHCCCHHHHHH----HHHCCCCCC
Confidence 33455666554433 334555544
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.25 E-value=98 Score=25.48 Aligned_cols=92 Identities=13% Similarity=-0.015 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhh
Q 009424 89 GSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 168 (535)
+++..+..++. .+|...-...+.++.+.+..+ +...+-.+.+ ..+..+-...+..+++.++.+....+...
T Consensus 19 ~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 89 (211)
T 3ltm_A 19 EKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALK-----DEDAWVRRAAADALGQIGDERAVEPLIKA 89 (211)
T ss_dssp GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-----CSCHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 44544444443 356666566666666666532 2222222222 22455555555666666654444444444
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Q 009424 169 LPDTLKDRRVYGALLNAYVRARM 191 (535)
Q Consensus 169 ~~~~~~~~~~~~~li~~~~~~g~ 191 (535)
+.+ +|..+-...+.++.+.++
T Consensus 90 l~~--~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 90 LKD--EDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp TTC--SSHHHHHHHHHHHHHHCC
T ss_pred HcC--CCHHHHHHHHHHHHHhCc
Confidence 444 555555555555555554
No 286
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.01 E-value=64 Score=23.29 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009424 226 EYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESL 305 (535)
Q Consensus 226 ~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 305 (535)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.. ..||...|-+|- -.+.|-.+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 34555555555544432 1111112223344555555555444322 245555554443 23445555554444
Q ss_pred HHHHh
Q 009424 306 RRVES 310 (535)
Q Consensus 306 ~~m~~ 310 (535)
.++..
T Consensus 92 ~~la~ 96 (115)
T 2uwj_G 92 AGLGG 96 (115)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44443
No 287
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=51.84 E-value=2.1e+02 Score=29.06 Aligned_cols=81 Identities=15% Similarity=0.033 Sum_probs=45.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHh-
Q 009424 216 VMMTLYMKIKEYDEVESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIK- 294 (535)
Q Consensus 216 ~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 294 (535)
.....+.-.|+++.|++.+... ...|.+.+...+.-+.-.+- ...++..=. + .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~---~-~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK---P-KR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC---C-cc-cccHHHHHHHHHHH
Confidence 3456667789999999987654 34566777666655444332 111111100 0 11 2336778888876
Q ss_pred --cCCHHHHHHHHHHH
Q 009424 295 --MGQVEKAEESLRRV 308 (535)
Q Consensus 295 --~g~~~~A~~~~~~m 308 (535)
..+..+|.++|--+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 57888888888766
No 288
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.51 E-value=66 Score=23.27 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=21.0
Q ss_pred HhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 256 CGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRRVE 309 (535)
Q Consensus 256 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (535)
+.+.|++++|..+.+... .||...|-+|- -.+.|..+++..-+.++.
T Consensus 50 LmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA-----YPDLEPWLALC--EYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 444555555554443322 45555554443 234444444444444443
No 289
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.35 E-value=54 Score=31.08 Aligned_cols=294 Identities=12% Similarity=0.080 Sum_probs=139.6
Q ss_pred HHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCC-CCCHHHHHHHHHHHHHcC
Q 009424 112 VVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDT-LKDRRVYGALLNAYVRAR 190 (535)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g 190 (535)
.+...+..|+++....++ +.|..+..........+...+..|+.+-+..+++.-... ..|..-++ .+...++.|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCC
Confidence 455556677776555554 445212111122234566777889999888888764432 12222222 334445677
Q ss_pred CHhHHHHHHHHHHHCCCCcCcch--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCCHhHH
Q 009424 191 MRGNAELLIDKMRDKGYAVHSLP--YNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD---VYSYNIWLSSCGSQGSTEKM 265 (535)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd---~~~~~~ll~~~~~~g~~~~a 265 (535)
+.+-+.-++ +.|..|+... -.+.+...+..|+.+.+..++ +.+..++ ..-+ +.+...+..|+.+-+
T Consensus 92 ~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 92 HTNMVKLLL----ENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGF-TPLHVAAKYGKVRVA 162 (437)
T ss_dssp CHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSC-CHHHHHHHTTCHHHH
T ss_pred CHHHHHHHH----hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCC-CHHHHHHHcCCHHHH
Confidence 765444444 4454444321 122344556677776555544 4443322 1122 234455677887766
Q ss_pred HHHHHHhHhCCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchH--HHHHHHHHhcCCHHHHHHHHH
Q 009424 266 EGVFELMKVDKAVNPNWT--TFSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPY--HYLLSLYGSVGKKEEVYRVWN 341 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~ 341 (535)
..+++. |..++.. ...+.+...+..|+.+-+ +.+.+.|..++...+ .+.+...+..|+.+-+..+++
T Consensus 163 ~~Ll~~-----g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 163 ELLLER-----DAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp HHHHHT-----TCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-----CCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 555543 2222211 011223445567776544 444455655544321 123444556777665555544
Q ss_pred HHHhhCCCCch---hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009424 342 LYRSVFPGVTN---LGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPR--IANLMMSWYVKEGNFDKAEAFFNSIIEE 416 (535)
Q Consensus 342 ~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~ 416 (535)
.+..++. ... ..+...+..|+.+....++ +.+..++.. .-.+.+...++.|..+-+.. +.+.
T Consensus 234 ----~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~----Ll~~ 300 (437)
T 1n11_A 234 ----YGGSANAESVQGV-TPLHLAAQEGHAEMVALLL----SKQANGNLGNKSGLTPLHLVAQEGHVPVADV----LIKH 300 (437)
T ss_dssp ----TTCCTTCCCTTCC-CHHHHHHHTTCHHHHHHHH----TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH----HHHH
T ss_pred ----cCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhC
Confidence 3333222 111 2333445677776555444 344433321 11123444456677664444 4444
Q ss_pred CCCCCH---hHHHHHHHHHHccccHHHHH
Q 009424 417 GGKPNS---TSWETLAEGHIRERRILEAL 442 (535)
Q Consensus 417 ~~~p~~---~~~~~li~~~~~~g~~~~A~ 442 (535)
|..++. .-++.|..+ +..|+.+-+.
T Consensus 301 g~~~~~~~~~g~t~L~~A-~~~g~~~~v~ 328 (437)
T 1n11_A 301 GVMVDATTRMGYTPLHVA-SHYGNIKLVK 328 (437)
T ss_dssp TCCTTCCCSSCCCHHHHH-HHSSCSHHHH
T ss_pred CccCCCCCCCCCCHHHHH-HHcCcHHHHH
Confidence 544332 223333333 3456655333
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.03 E-value=68 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHH
Q 009424 355 YHAMISSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 355 ~~~ll~~~~~~g~~~~a~~~~~~~ 378 (535)
...++.-|...|+.++|.+.++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 344555555555555555555554
No 291
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=49.81 E-value=1e+02 Score=25.00 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=49.2
Q ss_pred HHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcch---HHHHHHHHHh-cCChh
Q 009424 153 IAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLP---YNVMMTLYMK-IKEYD 228 (535)
Q Consensus 153 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~-~g~~~ 228 (535)
.++.|+++....++..-... .+...-.+.+...+..|+.+.-.++.+.+.+.|..++... ++.|..++.. ..+..
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYED-KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 44556666666666544321 1111122344445566666666677777777777665432 2333333322 22344
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 009424 229 EVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 229 ~a~~~~~~m~~~g~~pd~ 246 (535)
...++.+.+.+.|..+|.
T Consensus 92 ~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 456677777777766554
No 292
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=49.63 E-value=19 Score=30.64 Aligned_cols=23 Identities=0% Similarity=-0.096 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHh
Q 009424 358 MISSLARIGDIEGMEKIFEEWLS 380 (535)
Q Consensus 358 ll~~~~~~g~~~~a~~~~~~~~~ 380 (535)
.+......|+...+.++.+.+.+
T Consensus 213 ~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 213 PLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444566777777777776654
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.31 E-value=16 Score=30.16 Aligned_cols=19 Identities=0% Similarity=-0.226 Sum_probs=10.0
Q ss_pred HHHHHhhCCHhhHHHHHhh
Q 009424 150 LDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~ 168 (535)
+...+..|+.+-+..+++.
T Consensus 76 l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3444455666655555533
No 294
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=48.95 E-value=93 Score=25.27 Aligned_cols=27 Identities=4% Similarity=-0.184 Sum_probs=13.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccCCC
Q 009424 290 TMYIKMGQVEKAEESLRRVESRITGRD 316 (535)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~m~~~g~~~~ 316 (535)
...+..|+.+.-.++.+.+.+.|..++
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 333444554444445555555555544
No 295
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.37 E-value=2.3e+02 Score=28.52 Aligned_cols=114 Identities=10% Similarity=0.090 Sum_probs=62.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009424 226 EYDEVESMVSEMKEKGIRLDVYSYN----IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKA 301 (535)
Q Consensus 226 ~~~~a~~~~~~m~~~g~~pd~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (535)
+.+.|...+....+.. ..+..... .+.......+...++...+...... ..+.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6678888887776543 22332222 2222333444244555555554432 23433333344444567888888
Q ss_pred HHHHHHHHhcccCCCcchH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 302 EESLRRVESRITGRDRVPY-HYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
...|+.|..... +..-| --+..++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~--~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc--ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888887744211 11222 2334566677888888888888754
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.96 E-value=1.3e+02 Score=26.94 Aligned_cols=26 Identities=4% Similarity=0.160 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 009424 179 YGALLNAYVRARMRGNAELLIDKMRD 204 (535)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~ 204 (535)
...+|.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45677778888888888888777643
No 297
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=46.95 E-value=2.9e+02 Score=29.38 Aligned_cols=252 Identities=10% Similarity=0.027 Sum_probs=142.9
Q ss_pred HHHhhCCHhhHHHHHhhCCCC--CCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-------CcCcchHHHHHHH
Q 009424 152 LIAKVHGVASAEDFFLSLPDT--LKD--RRVYGALLNAYVRARMRGNAELLIDKMRDKGY-------AVHSLPYNVMMTL 220 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~~~~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~~ 220 (535)
+....|+.+++..+++..... ..+ +..-..+--+.+.+|..+++..++.......- .+.+..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345678888999999886641 122 33444555667777777778887776554320 0111112223333
Q ss_pred HHhcCC-hhHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHH--HH
Q 009424 221 YMKIKE-YDEVESMVSEMKEKGIRLDVYS--YN--IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATM--YI 293 (535)
Q Consensus 221 ~~~~g~-~~~a~~~~~~m~~~g~~pd~~~--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~ 293 (535)
.+-.|. -+++.+.+..+.... +..+ .. +|-..+.-.|+-+....++..+..+ .+..+...+..+ +.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~----~~e~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET----QHGNITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHhh
Confidence 333443 246677777776643 2221 22 2233355678888888888877753 233344444444 44
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcc-hHH---HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHh
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRV-PYH---YLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIE 369 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~-~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 369 (535)
-.|+.+.+..+.+.+... .|.. -|. ++.-+|+-.|+.....+++..+... ...+......+.-++...|+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCS
T ss_pred hCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHH
Confidence 678988888888887652 2322 233 2334677788887777788887753 2222232233333444567777
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q 009424 370 GMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNF-DKAEAFFNSIIE 415 (535)
Q Consensus 370 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 415 (535)
.+.++++.+.+.+ .|.+.--..+.-+....|.. .++..++..+..
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7788877665543 33444444444444445554 567888888875
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=46.26 E-value=1.7e+02 Score=26.44 Aligned_cols=56 Identities=5% Similarity=-0.099 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHhHHhccCCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 437 RILEALSCLKGAFAAEGAKSWRPKPV--NVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
+....+++-.-+- .-.++|.+. ++...+..+.+.+++..|..+.+++++.++.++.
T Consensus 185 ~~kR~lELAAYFT----~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 185 NTVRMLELAAYFT----KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp CHHHHHHHHHHGG----GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred cHHHHHHHHHHhc----cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 4456666666666 667777654 5667778889999999999999999999987665
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.69 E-value=20 Score=31.17 Aligned_cols=54 Identities=19% Similarity=0.111 Sum_probs=30.2
Q ss_pred HHhccCCCCccHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH--HccChHHHHHHHHHHH
Q 009424 79 KLSLMDNPQLGSASVLNDWEKGGRSLTKWE-------LCRVVKELR--KFRRYKHALEVYDWMN 133 (535)
Q Consensus 79 ~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 133 (535)
..++.|+.+ ....+++.+.+.|..++... .+.+..++. +.|..+-+..+++.-.
T Consensus 11 ~A~~~g~~~-~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 11 DIVSRGSPD-GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHTCGG-GGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344567777 77777777776666655332 223333332 4566666666655543
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.57 E-value=36 Score=30.16 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=25.0
Q ss_pred cccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHH
Q 009424 69 PMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEV 128 (535)
Q Consensus 69 ~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 128 (535)
|..-++.|..+. ..|+.+ +++.+.+.|..++...-.+.+...+..|+.+-...+
T Consensus 28 d~~g~t~L~~A~-~~g~~~-----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 28 DVHGHSASYYAI-ADNNVR-----LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp CTTSCCHHHHHH-HTTCHH-----HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH
T ss_pred CCCCCCHHHHHH-HcCCHH-----HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 333444444333 344444 445555556554432222344555566766544433
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.84 E-value=1e+02 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYR 344 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~ 344 (535)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555666666666666553
No 302
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.52 E-value=64 Score=29.60 Aligned_cols=54 Identities=15% Similarity=0.006 Sum_probs=23.6
Q ss_pred HHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 009424 149 QLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRD 204 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 204 (535)
.+...+..|+.+-+..+++.-.. ++.....+.+...+..|+.+-+..+++....
T Consensus 56 ~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 56 ALHLACKFGCVDTAKYLASVGEV--HSLWHGQKPIHLAVMANKTDLVVALVEGAKE 109 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHCCC--CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC--ccccCCCCHHHHHHHcCCHHHHHHHHHhccc
Confidence 34444555666555555554432 1111111122233445555555555554333
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.28 E-value=27 Score=30.27 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHh--cCCCHhHHHHHHHH
Q 009424 221 YMKIKEYDEVESMVSEMKEKGIRLDVYS-------YNIWLSSCG--SQGSTEKMEGVFEL 271 (535)
Q Consensus 221 ~~~~g~~~~a~~~~~~m~~~g~~pd~~~-------~~~ll~~~~--~~g~~~~a~~~~~~ 271 (535)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3455666665555555555554444222 233333321 44555555555544
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=40.83 E-value=2.1e+02 Score=26.03 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=86.6
Q ss_pred HHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH----HHHHHCCCCcCcchHHHHHHHHHhcC
Q 009424 150 LDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLI----DKMRDKGYAVHSLPYNVMMTLYMKIK 225 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~li~~~~~~g 225 (535)
..-|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|..+..-++..+....
T Consensus 42 ~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASV-------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 34466677777776654321 12344556655554443 44455667777666666666665544
Q ss_pred Chh-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009424 226 EYD-EVESMVSEMK----EKG--IRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQV 298 (535)
Q Consensus 226 ~~~-~a~~~~~~m~----~~g--~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 298 (535)
.-+ +=..+.+++. +.| ..-|......+...|.+.+++.+|...|- . |-.+....+..++.-+.+.+..
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l---g~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L---GTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T---SCTTHHHHHHHHHHHHHHTSCG
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h---cCCchHHHHHHHHHHHHHhcCC
Confidence 321 1122223332 223 23466677778888999999999888772 2 2233345665555444443332
Q ss_pred HHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 299 EKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 299 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (535)
.++ |...-.+++ -|...++...|..+|+....
T Consensus 184 ~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 221 112222222 34556788888777666543
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.00 E-value=1.2e+02 Score=23.00 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009424 322 YLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~m 343 (535)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 4455555555555555555555
No 306
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.07 E-value=1.2e+02 Score=25.25 Aligned_cols=19 Identities=11% Similarity=0.171 Sum_probs=10.1
Q ss_pred HHHHhcCCHhhHHHHHHHH
Q 009424 360 SSLARIGDIEGMEKIFEEW 378 (535)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~ 378 (535)
...++.|+.+.+..+++.-
T Consensus 202 ~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 202 KLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcC
Confidence 3344556666555555543
No 307
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.59 E-value=2.1e+02 Score=25.72 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=40.5
Q ss_pred HHHHHHHHHhHHhccCCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHhcCCCCChh
Q 009424 439 LEALSCLKGAFAAEGAKSWRPKPV--NVINFFKACEEESDMGSKEAFVALLRQPGYRKEK 496 (535)
Q Consensus 439 ~~A~~~~~~m~~~~~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 496 (535)
...+++-.-+- .-.+.|.+. ++...+..+.+.+++..|..+-+++++.++.++.
T Consensus 178 kR~lELAAYFT----~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 233 (320)
T 3mkr_B 178 KRICEMAAYFT----HSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV 233 (320)
T ss_dssp HHHHHHHHHHT----TSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHhc----cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 44556666666 667777654 5667777888999999999999999998876544
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.73 E-value=1.5e+02 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009424 284 TFSTMATMYIKMGQVEKAEESLRRVES 310 (535)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (535)
.|......+...|++.+|.++|+.-.+
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.09 E-value=1.8e+02 Score=26.50 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=9.6
Q ss_pred HHHHHHcCChhHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNS 412 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~ 412 (535)
+...++.|+.+-+.-+++.
T Consensus 248 L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 248 LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHc
Confidence 3334455666555555543
No 310
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=37.01 E-value=72 Score=24.61 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCh
Q 009424 74 NAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRY 122 (535)
Q Consensus 74 n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 122 (535)
-+++..+...+.+. .|-++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~-sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFR-SAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 35667777666676 7888888888777777777777777777766643
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.69 E-value=2e+02 Score=24.57 Aligned_cols=90 Identities=12% Similarity=-0.021 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCHhhHHHHHHHHHhc--CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 009424 357 AMISSLARIGDIEGMEKIFEEWLSV--KSSY----DPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAE 430 (535)
Q Consensus 357 ~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 430 (535)
--++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 4466777777788887777765432 1111 111112222222222233334444444422 334555556667
Q ss_pred HHHccccHHHHHHHHHHhH
Q 009424 431 GHIRERRILEALSCLKGAF 449 (535)
Q Consensus 431 ~~~~~g~~~~A~~~~~~m~ 449 (535)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7777777777777777766
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.48 E-value=1.4e+02 Score=23.07 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=42.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 95 NDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
+.|.+.|.+++..-. .++..+...+..-.|.++++.+.+.+ ...+..+.-..++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKF--PNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGC--TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhC--CCCChhhHHHHHHHHHHCCCE
Confidence 345667888776654 56666666666677888888888777 556666666666777766654
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.35 E-value=1.1e+02 Score=25.42 Aligned_cols=14 Identities=7% Similarity=-0.216 Sum_probs=5.8
Q ss_pred HHcCCHhHHHHHHH
Q 009424 187 VRARMRGNAELLID 200 (535)
Q Consensus 187 ~~~g~~~~A~~~~~ 200 (535)
++.|+.+....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444433
No 314
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.70 E-value=1.3e+02 Score=22.42 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcC
Q 009424 92 SVLNDWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRG 136 (535)
Q Consensus 92 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 136 (535)
.+|+.+....+.|+...--.-+..+...+++..|.++|-.+....
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~ 91 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDH 91 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCc
Confidence 456666666675555444444555667889999999998887654
No 315
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=35.04 E-value=2.4e+02 Score=25.06 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=11.1
Q ss_pred HHHHHHhhCCHhhHHHHHhh
Q 009424 149 QLDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 149 li~~~~~~g~~~~A~~~f~~ 168 (535)
.+...+..|+.+-+..+++.
T Consensus 61 ~L~~A~~~g~~~~v~~Ll~~ 80 (351)
T 3utm_A 61 PLHLAAGYNRVRIVQLLLQH 80 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34445555666666555554
No 316
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.45 E-value=2.7e+02 Score=25.11 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 009424 369 EGMEKIFEEWLSVKSSYDP--RIANLMMSWYVKEGNFDKAEAFFNSIIEEGG 418 (535)
Q Consensus 369 ~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 418 (535)
....++-..+..-++.|.- -+...-+....|.+++..|-.+-+++.+.+.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3344444444444444322 2344556667778888888888888887544
No 317
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.41 E-value=1.8e+02 Score=22.94 Aligned_cols=54 Identities=7% Similarity=0.032 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHCCCCcCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 009424 193 GNAELLIDKMRDKGYAVHS-LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDV 246 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 246 (535)
+++.++|..|...|+--.. .-|......+-..|++++|.++|+.-.+.+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4588888888888765443 34566667777888888888888888887766643
No 318
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.25 E-value=80 Score=23.98 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccC
Q 009424 75 AIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRR 121 (535)
Q Consensus 75 ~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 121 (535)
.++..+...+.+. .|-++++.+.+.+...+..|.-..|+.+...|-
T Consensus 15 ~Il~~l~~~~~~~-sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFR-SAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4566666666666 788888888777767777777677777766654
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.86 E-value=2.7e+02 Score=24.94 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc--cHHHHHHHHHHhHHhccCCCCCCCHHH
Q 009424 390 ANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER--RILEALSCLKGAFAAEGAKSWRPKPVN 463 (535)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~g~~p~~~~ 463 (535)
...++.-|...|+.++|.+.++++...... .......+..++-+.+ ..+...+++..+. ..|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~----~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLW----KSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH----HHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHH----HCCCCCHHHH
Confidence 467888888899999999999888531111 2334445555555543 2455677888877 5565544433
No 320
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.77 E-value=62 Score=24.98 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=6.6
Q ss_pred hcCCCHhHHHHHHH
Q 009424 257 GSQGSTEKMEGVFE 270 (535)
Q Consensus 257 ~~~g~~~~a~~~~~ 270 (535)
+..|+.+-+..+++
T Consensus 109 ~~~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 109 VQEGHTAVVSFLAA 122 (156)
T ss_dssp HHHTCHHHHHHHHT
T ss_pred HHhChHHHHHHHHh
Confidence 34455554444443
No 321
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.72 E-value=1.4e+02 Score=24.89 Aligned_cols=20 Identities=15% Similarity=-0.192 Sum_probs=9.0
Q ss_pred HhcCCHHHHHHHHHHHHhcc
Q 009424 293 IKMGQVEKAEESLRRVESRI 312 (535)
Q Consensus 293 ~~~g~~~~A~~~~~~m~~~g 312 (535)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444443
No 322
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.70 E-value=1.9e+02 Score=23.04 Aligned_cols=51 Identities=4% Similarity=0.012 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHHHhcccCC--CcchHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 009424 295 MGQVEKAEESLRRVESRITGR--DRVPYHYLLS-L-----YGSVGKKEEVYRVWNLYRS 345 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 345 (535)
.|++-+|-++|+..-.....+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377778888877775543334 3445666666 2 2345777777777776644
No 323
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.64 E-value=4.7e+02 Score=27.70 Aligned_cols=164 Identities=5% Similarity=-0.046 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhhC----CCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHH
Q 009424 321 HYLLSLYGSVGK---KEEVYRVWNLYRSVF----PGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM 393 (535)
Q Consensus 321 ~~li~~~~~~g~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 393 (535)
..++...|..|. .++|.+.|+...... +.|+. -..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345666777776 567888888766532 23332 2333344446677766666777665543 45555678
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-ccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRE-RRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACE 472 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~ 472 (535)
+.+++...+.+...++++.....+..+...... ++.+...+ -..+.|++++.+=.+.. ...+......+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l-~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKL-FQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTT-TTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHH-HHHhCCCchHHHHHHHHHH
Confidence 888888888888888877766533222233333 33333332 22455666665532100 1223334456777887766
Q ss_pred hcCChhhHHHHHHHHhcCC
Q 009424 473 EESDMGSKEAFVALLRQPG 491 (535)
Q Consensus 473 ~~g~~~~a~~~~~~~~~~~ 491 (535)
..-.-++-.+-++...+..
T Consensus 843 ~~~~t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKKNN 861 (909)
T ss_dssp TTCCSHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHhhC
Confidence 5544444444455555443
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.35 E-value=1e+02 Score=23.58 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=25.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcc-ChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCC
Q 009424 98 EKGGRSLTKWELCRVVKELRKFR-RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHG 158 (535)
Q Consensus 98 ~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~ 158 (535)
.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.+ ...+..+.-.-++.+...|-
T Consensus 10 ~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 10 RKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAG--EDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTS
T ss_pred HHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHCCc
Confidence 344444444432 3344444333 3444555555555544 33444444444455554443
No 325
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.25 E-value=2.4e+02 Score=24.10 Aligned_cols=29 Identities=14% Similarity=-0.060 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009424 385 YDPRIANLMMSWYVKEGNFDKAEAFFNSI 413 (535)
Q Consensus 385 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 413 (535)
+++......+..+.+.|+.++|.++|=+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34555555666667777777777766443
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.06 E-value=1.4e+02 Score=22.80 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=36.8
Q ss_pred hHHHHHHHhccC-CCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChH
Q 009424 73 WNAIFRKLSLMD-NPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYK 123 (535)
Q Consensus 73 ~n~li~~~~~~g-~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 123 (535)
--.++..+...+ .+. .|-++++.+.+.+...+..|.-..|+.+...|-+.
T Consensus 20 R~~Il~~L~~~~~~~~-sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHM-SAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHCC-CCSB-CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 346777777666 677 89999999988877778888777777777766543
No 327
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=31.62 E-value=1.4e+02 Score=23.20 Aligned_cols=17 Identities=18% Similarity=0.069 Sum_probs=8.4
Q ss_pred HHHHhhCCHhhHHHHHh
Q 009424 151 DLIAKVHGVASAEDFFL 167 (535)
Q Consensus 151 ~~~~~~g~~~~A~~~f~ 167 (535)
...++.|+++....+++
T Consensus 13 ~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 13 LEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHTCHHHHHHHCC
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33444555555555544
No 328
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=31.61 E-value=53 Score=20.99 Aligned_cols=32 Identities=9% Similarity=0.029 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHCCCCcCcchHHHHHHHH-Hhc
Q 009424 193 GNAELLIDKMRDKGYAVHSLPYNVMMTLY-MKI 224 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~ 224 (535)
++|.+.|.+|.+..-.+..-||...|+.. ++.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 56777777765533233356777777777 443
No 329
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=31.32 E-value=1.5e+02 Score=24.30 Aligned_cols=12 Identities=0% Similarity=-0.089 Sum_probs=5.5
Q ss_pred HHHHHHhCCCCC
Q 009424 93 VLNDWEKGGRSL 104 (535)
Q Consensus 93 ~~~~m~~~g~~p 104 (535)
+++.+.+.|..+
T Consensus 40 ~v~~Ll~~g~~~ 51 (223)
T 2f8y_A 40 AAKRLLEASADA 51 (223)
T ss_dssp HHHHHHHTTCCT
T ss_pred HHHHHHHcCCCC
Confidence 344444445444
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.81 E-value=2.1e+02 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=18.3
Q ss_pred HHHHHHccccHHHHHHHHHHhH
Q 009424 428 LAEGHIRERRILEALSCLKGAF 449 (535)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~ 449 (535)
.+..|.+.|.+++|.+++++..
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHhcchHHHHHHHHHHh
Confidence 4456888999999999999888
No 331
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=30.47 E-value=1.9e+02 Score=26.13 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHH--HHHHH----HHHcCCHhHHHHHHH
Q 009424 127 EVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYG--ALLNA----YVRARMRGNAELLID 200 (535)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~--~li~~----~~~~g~~~~A~~~~~ 200 (535)
+++..+.+.| +.+..+...=++..+++.=.++.+.+++|.+....+....+- +++.. ..+..++++....+.
T Consensus 209 ~L~~hL~~~~--i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~ 286 (331)
T 3qye_A 209 DLYNHLEEHE--IGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIK 286 (331)
T ss_dssp HHHHHHHHTT--CCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHcC--CChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4666666666 556666666666666666667777777776544323333222 22221 123346666666666
Q ss_pred HHHHCCCCcCcchHHHHHHHHHhcC
Q 009424 201 KMRDKGYAVHSLPYNVMMTLYMKIK 225 (535)
Q Consensus 201 ~m~~~g~~p~~~~~~~li~~~~~~g 225 (535)
..... .+......++.-.....
T Consensus 287 ~~~p~---~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 287 STLPN---LGLVQMEKTINQVFEMD 308 (331)
T ss_dssp HTTTC---CCHHHHHHHHHHHHHCC
T ss_pred hhCCC---CCHHHHHHHHHHHHhCC
Confidence 52221 12334445554444443
No 332
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.19 E-value=3.6e+02 Score=25.62 Aligned_cols=22 Identities=0% Similarity=-0.227 Sum_probs=12.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc
Q 009424 330 VGKKEEVYRVWNLYRSVFPGVT 351 (535)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~~ 351 (535)
.++.+.|+..+.+|.+.|..|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3456666666666665555544
No 333
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=30.09 E-value=1.9e+02 Score=28.42 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009424 320 YHYLLSLYG--SVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWY 397 (535)
Q Consensus 320 ~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 397 (535)
|..-|..+. ...+.+.......++...-+--+..-..-++..|.+.|-.+.|+++++.+-..-.. +...+ .-+..|
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHH
Q ss_pred HHcCChhHHHH
Q 009424 398 VKEGNFDKAEA 408 (535)
Q Consensus 398 ~~~g~~~~A~~ 408 (535)
+|+|+++....
T Consensus 560 ~rA~~~~~Vk~ 570 (570)
T 3f3f_C 560 SRAGKYELVKS 570 (570)
T ss_dssp -----------
T ss_pred HHcCChhhccC
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.84 E-value=1.1e+02 Score=23.74 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=39.9
Q ss_pred hHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCh
Q 009424 73 WNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRY 122 (535)
Q Consensus 73 ~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 122 (535)
--.++..+...+.+. .|-++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 24 R~~Il~~L~~~~~~~-sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 24 RHAILEYLVNSMAHP-TADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHCSSCC-CHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 346777777777777 8999999999888888899988888888887754
No 335
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.75 E-value=70 Score=23.97 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=23.0
Q ss_pred HHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009424 198 LIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKE 239 (535)
Q Consensus 198 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 239 (535)
+|+.+.+..+.|++..--.-|..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555444444444455566666666666665554
No 336
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=29.74 E-value=39 Score=22.95 Aligned_cols=39 Identities=3% Similarity=0.061 Sum_probs=22.5
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 009424 163 EDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDK 201 (535)
Q Consensus 163 ~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 201 (535)
..++++++..+|++.||+-+...+-+..-..++..+.++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346667776667777777666655444444444444443
No 337
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.67 E-value=2.4e+02 Score=23.31 Aligned_cols=22 Identities=9% Similarity=-0.213 Sum_probs=10.7
Q ss_pred cCCHHHHHHHHHHHHhcccCCC
Q 009424 295 MGQVEKAEESLRRVESRITGRD 316 (535)
Q Consensus 295 ~g~~~~A~~~~~~m~~~g~~~~ 316 (535)
..|.+.|+-.+-+|.+.|-.|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3455555555555555444333
No 338
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.65 E-value=2.4e+02 Score=23.35 Aligned_cols=33 Identities=3% Similarity=-0.008 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHh
Q 009424 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLAR 364 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 364 (535)
.+++.|+-.+-+|.+.| .|..+.-..++-+...
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 45555555555555555 4433333333333333
No 339
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.34 E-value=2.6e+02 Score=23.64 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHCCCCcCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 009424 193 GNAELLIDKMRDKGYAVHS-LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLD 245 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 245 (535)
+++.++|..|...||--.. .-|......+-..|++.+|.++|+.-++.+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5778888888888765543 3456666777788888888888888887776663
No 340
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.29 E-value=1.3e+02 Score=29.32 Aligned_cols=121 Identities=9% Similarity=0.165 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHH-------HHHHHHhcCChhHHHHHHHHHHHcCCCCC---
Q 009424 176 RRVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNV-------MMTLYMKIKEYDEVESMVSEMKEKGIRLD--- 245 (535)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------li~~~~~~g~~~~a~~~~~~m~~~g~~pd--- 245 (535)
...+|.++..|...+.++.|..+..+..- +.+..+-+. +...+.-.+++.+|.+.+....+.-....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~ 307 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL 307 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Confidence 45678888888888888888888776641 112122222 23445567788888877777665421111
Q ss_pred -----HHHHHHHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009424 246 -----VYSYNIWLSSCGSQGSTEKMEGVFELMKVDKAVNPNWTTFSTMATMYIKMGQVEKAEESLRR 307 (535)
Q Consensus 246 -----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (535)
...|..++..+ .|++.. ..+|.. .........|..|..++ +.|+++.-..+++.
T Consensus 308 gfr~~a~K~lI~V~LL--lG~iP~-r~lf~q----~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 308 GFLQQSNKLHCCIQLL--MGDIPE-LSFFHQ----SNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHHH--HTCCCC-HHHHTT----TSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHhh--cCCCCC-hHHhhc----hhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 01122222222 355443 222221 11122234566677665 66777665555443
No 341
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.21 E-value=2.5e+02 Score=25.48 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhhCCC
Q 009424 146 AAIQLDLIAKVHGVASAEDFFLSLPD 171 (535)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~f~~~~~ 171 (535)
...++.-|...|++++|.+.++++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 44566677777777777777777765
No 342
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.17 E-value=2.3e+02 Score=22.90 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHCCCCcCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009424 193 GNAELLIDKMRDKGYAVHSLPYNVMMTLYMKIKEYDEVESMVSEMKEKGIR 243 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 243 (535)
+....+++.+.+.|+--|..--...+....+.|.+ ....+-.++.+.|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 34455555566665554443334444444443322 224445556666663
No 343
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=29.09 E-value=3.6e+02 Score=25.26 Aligned_cols=145 Identities=8% Similarity=0.014 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhhC----CCCchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHH
Q 009424 321 HYLLSLYGSVGK---KEEVYRVWNLYRSVF----PGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLM 393 (535)
Q Consensus 321 ~~li~~~~~~g~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 393 (535)
..++...|..|+ .++|.+.|+...... +.|+.. ..+-+.+ .+..++-..+++..... .+..--..+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr---~~Vy~~~-~~~~~~~~~l~~~y~~s---~~~~ek~~l 273 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT---LAVFAVG-AQSTEGWDFLYSKYQFS---LSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGH---HHHHHHH-TTSHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcc---eeEEeee-eCCHHHHHHHHHHHhcC---CCHHHHHHH
Confidence 345666677776 567788888776532 223321 1111111 22233334455554443 255566778
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccc-cHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHH
Q 009424 394 MSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRER-RILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACE 472 (535)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~ 472 (535)
+.+++...+.+...++++......+.+....... +.+.+.+. ..+.|++++++=.+.. ...+.++...+..++....
T Consensus 274 l~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~-~~~v~~n~~g~~~aw~fl~~nw~~l-~~~~~~~~~~~~~~i~~~~ 351 (419)
T 3rjo_A 274 EFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQI-LTLIGRNPVGYPLAWQFLRKNWNKL-VQKFELGSSSIAHMVMGTT 351 (419)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHH-HHHHHTSTTTHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHH-HHHHhcCcchHHHHHHHHHHHHHHH-HHHhCcCchhHHHHHHHHh
Confidence 8888888888888888888776543223333333 33444332 2345555554321000 0112334466777777655
Q ss_pred hc
Q 009424 473 EE 474 (535)
Q Consensus 473 ~~ 474 (535)
..
T Consensus 352 ~~ 353 (419)
T 3rjo_A 352 NQ 353 (419)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 344
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.97 E-value=2.2e+02 Score=22.71 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHCCCCcCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 009424 193 GNAELLIDKMRDKGYAVHS-LPYNVMMTLYMKIKEYDEVESMVSEMKEKGIRLDVY 247 (535)
Q Consensus 193 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~ 247 (535)
+++.++|..|...||--.. .-|......+-..|++.+|.++|..-++.+-+|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4577889888888765543 345666667778889999999998888887776543
No 345
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.85 E-value=1.3e+02 Score=23.51 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcc-ChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 95 NDWEKGGRSLTKWELCRVVKELRKFR-RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
..|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+ ...+..+.-..++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLG--EEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHCCcE
Confidence 345566777776654 4556665555 5666888888887776 555666666666666666644
No 346
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=28.75 E-value=2.2e+02 Score=23.30 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=9.9
Q ss_pred HHHHHhhCCHhhHHHHHhh
Q 009424 150 LDLIAKVHGVASAEDFFLS 168 (535)
Q Consensus 150 i~~~~~~g~~~~A~~~f~~ 168 (535)
+...+..|+.+-+..+++.
T Consensus 62 L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 62 LHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHB
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444555555555555544
No 347
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.65 E-value=66 Score=20.56 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcccCCCcchHHHHHHHH
Q 009424 299 EKAEESLRRVESRITGRDRVPYHYLLSLY 327 (535)
Q Consensus 299 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (535)
++|.+.|.+|++..-.+...||.-.|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45566666655444444555666655555
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.57 E-value=1e+02 Score=24.06 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=33.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 96 DWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
.|.+.|.+++..-. .++..+...+..-.|.++++.+.+.+ ...+..+.-..++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKD--KNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHS--TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCcE
Confidence 34455666554443 45555555555566677777766665 455555555556666666644
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.90 E-value=1.9e+02 Score=22.40 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=38.7
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 96 DWEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+ ...+..+.-.-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~--~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTA--SGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhC--CCCCHhHHHHHHHHHHHCCcE
Confidence 44556777776543 4556665555 567888888887776 555666655566666666643
No 350
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.55 E-value=2.5e+02 Score=22.85 Aligned_cols=47 Identities=17% Similarity=0.058 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCC
Q 009424 143 ASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARM 191 (535)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~ 191 (535)
..+-...+..+++.|..+....+.+.+.+ +|..+-...+.++.+.++
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGD 79 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC
Confidence 34444444444555543333334444433 455444445555555554
No 351
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.01 E-value=4.5e+02 Score=25.63 Aligned_cols=124 Identities=11% Similarity=0.117 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH--HHHH-HHHHHHhcCCCHhHHHHHHHHhHhCCCCCCCH----
Q 009424 211 SLPYNVMMTLYMKIKEYDEVESMVSEMKEKGI-RLDV--YSYN-IWLSSCGSQGSTEKMEGVFELMKVDKAVNPNW---- 282 (535)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~--~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 282 (535)
...+|.+++.|...+.++.|..+.....--.. .+|. .+|. .+...+.-.+++.+|.+.+....+.. +++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka--p~~~~a~g 308 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA--PHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC--SCSSSCSH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--Ccchhhhh
Confidence 45688999999999999999999987641100 1111 2222 23455677899999999998877532 2221
Q ss_pred ---HH--HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009424 283 ---TT--FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLY 343 (535)
Q Consensus 283 ---~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 343 (535)
.+ |..++..+ .|++-+ ..+|.. .+.+.....|..+..++ +.|++.+-...++.-
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~q---~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFHQ---SNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHTT---TSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhhc---hhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 12 22333333 365432 223321 11111234477777775 668876665555443
No 352
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.92 E-value=1.5e+02 Score=19.99 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcc-ChHHHHHHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCH
Q 009424 97 WEKGGRSLTKWELCRVVKELRKFR-RYKHALEVYDWMNNRGERFRLSASDAAIQLDLIAKVHGV 159 (535)
Q Consensus 97 m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~ 159 (535)
|.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+ ...+..+.-..+..+...|-+
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~--~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMG--EEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCCe
Confidence 4445555554432 4445444443 3444556666665555 445555555555666555543
No 353
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.90 E-value=1.1e+02 Score=23.73 Aligned_cols=48 Identities=8% Similarity=0.181 Sum_probs=38.4
Q ss_pred hHHHHHHHhccCCCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCh
Q 009424 73 WNAIFRKLSLMDNPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRY 122 (535)
Q Consensus 73 ~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 122 (535)
--.++..+...+ +. .|-++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 21 R~~Il~~l~~~~-h~-ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HA-TPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHHHS-SB-CHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhcC-CC-CHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345677777777 77 8999999999988888999988888888877754
No 354
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.76 E-value=1.2e+02 Score=23.72 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=40.4
Q ss_pred hHHHHHHHhccC-CCCccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHccChH
Q 009424 73 WNAIFRKLSLMD-NPQLGSASVLNDWEKGGRSLTKWELCRVVKELRKFRRYK 123 (535)
Q Consensus 73 ~n~li~~~~~~g-~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 123 (535)
--.++..+...+ .+. .|-++++.+.+.+...+..|.-..|+.+...|-+.
T Consensus 19 R~~Il~~L~~~~~~h~-sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 19 RLKILEVLQQPECQHI-SAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHHHTSGGGSSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 346777777776 777 89999999999888889999888888888877543
No 355
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.72 E-value=2.5e+02 Score=22.60 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHhcCC
Q 009424 281 NWTTFSTMATMYIKMGQ 297 (535)
Q Consensus 281 ~~~~~~~li~~~~~~g~ 297 (535)
+..+-...+.++.+.|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33444444444444443
No 356
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=26.26 E-value=5.1e+02 Score=25.97 Aligned_cols=336 Identities=6% Similarity=-0.052 Sum_probs=158.7
Q ss_pred HHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 009424 127 EVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAELLIDKMRDKG 206 (535)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 206 (535)
++-..+.+.. ..+.....-+.-+..+++.+++......+.. +. .+...-.....+....|+..+|......+-..|
T Consensus 57 ev~~Fl~~~~-~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p--~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANP-TLPPARTLQSRFVNELARREDWRGLLAFSPE-KP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCC-CChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 4444444433 1333344455566777788888888886666 22 466666666777788888888888777777665
Q ss_pred CCcCcchHHHHHHHHHhcCChhH--HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHhHhCC--------
Q 009424 207 YAVHSLPYNVMMTLYMKIKEYDE--VESMVSEMKEKGIRLDVYSYNIWLSSCGSQGSTEKMEGVFELMKVDK-------- 276 (535)
Q Consensus 207 ~~p~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------- 276 (535)
......+..++..+.+.|.+.. ...-++.+...| +...-..++... ..+.-..+.. +..+.+..
T Consensus 133 -~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~~~~~~~a~~-~~al~~~p~~~~~~~~ 206 (618)
T 1qsa_A 133 -KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-PADYQTIASA-IISLANNPNTVLTFAR 206 (618)
T ss_dssp -SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-CGGGHHHHHH-HHHHHHCGGGHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-CHHHHHHHHH-HHHHHhChHhHHHHHh
Confidence 3345677888888887775433 333344444443 111111111111 0000000111 00111000
Q ss_pred CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCCcchHH----HHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 009424 277 AVNPNWTT---FSTMATMYIKMGQVEKAEESLRRVESRITGRDRVPYH----YLLSLYGSVGKKEEVYRVWNLYRSVFPG 349 (535)
Q Consensus 277 ~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~ 349 (535)
...++... +..-+.-+.+ .+.+.|...|....+... .+...+. .+.......+...++...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-- 282 (618)
T 1qsa_A 207 TTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (618)
T ss_dssp HSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred ccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--
Confidence 00122221 1111222233 266777777766654321 2222222 22222223332334444444433322
Q ss_pred CchhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------------C
Q 009424 350 VTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEE------------G 417 (535)
Q Consensus 350 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------~ 417 (535)
.+.....-.+....+.|+++.|...|..|...... .....--+..++...|+.++|..+|+.+... |
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg 361 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIG 361 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcC
Confidence 22211222333334557777777777666432211 2222333444556667777777776665431 2
Q ss_pred CCC-------C---Hh--H---HHHHHHHHHccccHHHHHHHHHHhHHhccCCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 009424 418 GKP-------N---ST--S---WETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEA 482 (535)
Q Consensus 418 ~~p-------~---~~--~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 482 (535)
..+ + .. . -..-+..+...|....|...+.... .. .+......+.......|..+.+..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~----~~---~~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 362 EEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV----KS---KSKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp CCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH----TT---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHH----hc---CCHHHHHHHHHHHHHCCChHHHHH
Confidence 110 0 00 0 1122345667788888888888777 32 233333333334445566655554
Q ss_pred HH
Q 009424 483 FV 484 (535)
Q Consensus 483 ~~ 484 (535)
..
T Consensus 435 ~~ 436 (618)
T 1qsa_A 435 AT 436 (618)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 357
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=25.77 E-value=1.9e+02 Score=26.39 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCCCCCC---HH--HHHHHHHHH----HHcCCHhHHHH
Q 009424 127 EVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPDTLKD---RR--VYGALLNAY----VRARMRGNAEL 197 (535)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~--~~~~li~~~----~~~g~~~~A~~ 197 (535)
+++..+.+.| +.+..+...=++..+++.=.++.+.+++|.+....+. .. +.-+++..+ .+..++++...
T Consensus 230 ~L~~hL~~~~--i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~ 307 (345)
T 2qfz_A 230 QVHRHLDQHE--VRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLL 307 (345)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHcC--CchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 4556666666 5555666666666777766777777777776654222 11 222333222 23466666666
Q ss_pred HHHHH
Q 009424 198 LIDKM 202 (535)
Q Consensus 198 ~~~~m 202 (535)
++..+
T Consensus 308 ~L~~~ 312 (345)
T 2qfz_A 308 FLQNL 312 (345)
T ss_dssp HHTSC
T ss_pred HHHcC
Confidence 66544
No 358
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.68 E-value=2.5e+02 Score=22.29 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCC--CHhHHHHHHH-H-----HHccccHHHHHHHHHHhHH
Q 009424 398 VKEGNFDKAEAFFNSIIEEGGKP--NSTSWETLAE-G-----HIRERRILEALSCLKGAFA 450 (535)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 450 (535)
...|++-+|-++++..-.....+ +...|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34588888888888886654444 4566777777 2 2357899999999999873
No 359
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.68 E-value=1.6e+02 Score=23.42 Aligned_cols=47 Identities=9% Similarity=-0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCchhhHHHHHHHHHhcCC
Q 009424 321 HYLLSLYGSVGKKEEVYRVWNLYRSV--FPGVTNLGYHAMISSLARIGD 367 (535)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~ 367 (535)
..++..+...+..-.|.++++.+... ++..+..|.---++.+...|-
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444444455555555555554 444444444444455555543
No 360
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=25.30 E-value=2.1e+02 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.002 Sum_probs=6.6
Q ss_pred HHHHhcCCHHHHHH
Q 009424 290 TMYIKMGQVEKAEE 303 (535)
Q Consensus 290 ~~~~~~g~~~~A~~ 303 (535)
...++.|+.+-+..
T Consensus 227 ~~A~~~~~~~~v~~ 240 (285)
T 3d9h_A 227 HAVVRTASEELACL 240 (285)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 33445566544433
No 361
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.30 E-value=3e+02 Score=23.00 Aligned_cols=22 Identities=0% Similarity=-0.259 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCch
Q 009424 331 GKKEEVYRVWNLYRSVFPGVTN 352 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~~~~ 352 (535)
.+++.|+-.+-+|.+.|..|..
T Consensus 49 SDpDAALywLaRMl~~GEDp~~ 70 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNF 70 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4455555555555554444443
No 362
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.54 E-value=3.4e+02 Score=27.48 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCcCcchHHHHHHHHHh
Q 009424 177 RVYGALLNAYVRARMRGNAELLIDKMRDKGYAVHSLPYNVMMTLYMK 223 (535)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 223 (535)
.+| ++|--+.++|++++|.++.++.... +.--...+...+..|+.
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 366 4667788999999999988766432 11112456666777764
No 363
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.54 E-value=85 Score=27.21 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHhCCCCC-------CHHHHHHHHHHHH--HccChHHHHHHHHHH
Q 009424 68 RPMIKWNAIFRKLSLMDNPQLGSASVLNDWEKGGRSL-------TKWELCRVVKELR--KFRRYKHALEVYDWM 132 (535)
Q Consensus 68 ~~~~~~n~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 132 (535)
+|..-++.|..+ ++.|+.+ .+..+++.....+... |..-.+.+..++. +.|+.+-+..+++.-
T Consensus 9 ~d~~g~t~L~~A-~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 9 PRLYDRRSIFDA-VAQSNCQ-ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp --CCCHHHHHHH-HHTTCSS-TTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred CCcccchHHHHH-HHcCCHH-HHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 344455555554 4678888 7777887776665433 2333344555543 247776666666654
No 364
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.53 E-value=3e+02 Score=22.78 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHHHHhcccCCCcchHHHHHHHHHhcCC
Q 009424 294 KMGQVEKAEESLRRVESRITGRDRVPYHYLLSLYGSVGK 332 (535)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (535)
+..+.+.|+-.+-+|.+.| .|.-+.-..++.+.-..|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 4578888999999998888 6655555555555544443
No 365
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.90 E-value=1.3e+02 Score=23.97 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=46.9
Q ss_pred cHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHccChHHHHHHHHHHHhc--CCCcccCHhHHHHHHHHHHhhCCHh
Q 009424 89 GSASVLND-WEKGGRSLTKWELCRVVKELRKFRRYKHALEVYDWMNNR--GERFRLSASDAAIQLDLIAKVHGVA 160 (535)
Q Consensus 89 ~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~~~li~~~~~~g~~~ 160 (535)
.+++-+.+ +.+.|.+++..- ..++..+...+..-.|.++++.+.+. + ...+..+.-.-++.+...|-+.
T Consensus 15 ~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~--~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPD--LNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGG--GCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHCCCEE
Confidence 44444444 345588877654 36677777777777888888888877 6 5666666666677788777553
No 366
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=23.81 E-value=2.6e+02 Score=21.70 Aligned_cols=16 Identities=19% Similarity=0.002 Sum_probs=6.7
Q ss_pred HHHhhCCHhhHHHHHh
Q 009424 152 LIAKVHGVASAEDFFL 167 (535)
Q Consensus 152 ~~~~~g~~~~A~~~f~ 167 (535)
..+..|+.+-+..+++
T Consensus 53 ~A~~~~~~~~v~~Ll~ 68 (169)
T 2y1l_E 53 LAAFNGHLEIVEVLLK 68 (169)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3334444444444443
No 367
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.13 E-value=51 Score=28.71 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=7.8
Q ss_pred HHhcCChhhHHHHHH
Q 009424 471 CEEESDMGSKEAFVA 485 (535)
Q Consensus 471 ~~~~g~~~~a~~~~~ 485 (535)
....|..+-+..+++
T Consensus 240 A~~~g~~~iv~~Ll~ 254 (273)
T 2pnn_A 240 AASSGKIGVLAYILQ 254 (273)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhChHHHHHHHHH
Confidence 445566655544443
No 368
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.66 E-value=3.3e+02 Score=22.51 Aligned_cols=35 Identities=0% Similarity=-0.104 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 009424 331 GKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARI 365 (535)
Q Consensus 331 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 365 (535)
.+++.|+-.+-+|.+.|.+|..+.-..++-+....
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDI 55 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASEDV 55 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 44555555555555554444433333333443333
No 369
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.19 E-value=1.2e+02 Score=21.56 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHC
Q 009424 193 GNAELLIDKMRDK 205 (535)
Q Consensus 193 ~~A~~~~~~m~~~ 205 (535)
+.|.++++.+..+
T Consensus 54 ~~ar~Lld~L~~r 66 (97)
T 3ygs_P 54 DQARQLIIDLETR 66 (97)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHc
Confidence 3344444444333
No 370
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.89 E-value=88 Score=22.33 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=23.2
Q ss_pred CHhhHHHHHhhCCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 009424 158 GVASAEDFFLSLPDTLKDRRVYGALLNAYVRARMRGNAE 196 (535)
Q Consensus 158 ~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 196 (535)
..+.|+++++.++. +...+|..++.++.+.|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~--rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLET--RGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTT--SCTTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHH--cChHHHHHHHHHHHHcCcHHHHH
Confidence 45666666666666 55566777777776656655443
No 371
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.79 E-value=3.1e+02 Score=21.87 Aligned_cols=50 Identities=6% Similarity=-0.083 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcccCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 009424 301 AEESLRRVESRITGRDRV-PYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGV 350 (535)
Q Consensus 301 A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 350 (535)
+.++|..|..+|+..... .|......+-..|++.+|.++|+.-...+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555555555443332 33444444444555555555555555444444
No 372
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.74 E-value=2.3e+02 Score=25.71 Aligned_cols=43 Identities=7% Similarity=0.012 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCcccCHhHHHHHHHHHHhhCCHhhHHHHHhhCCC
Q 009424 127 EVYDWMNNRGERFRLSASDAAIQLDLIAKVHGVASAEDFFLSLPD 171 (535)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 171 (535)
+++..+.+.| +.+..+...=++..+++.=.++.+.+++|.+..
T Consensus 214 ~L~~hL~~~~--i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 214 KLFAHFKKNN--LTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHHHHHHTT--CCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 3555666666 555566666666666666666777777766543
No 373
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.66 E-value=4.5e+02 Score=23.78 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCHhHHHHHHHHH
Q 009424 181 ALLNAYVRARMRGNAELLIDKM 202 (535)
Q Consensus 181 ~li~~~~~~g~~~~A~~~~~~m 202 (535)
.++.-|...|+.++|.+.++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 3444444444444444444444
No 374
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.64 E-value=2.3e+02 Score=23.79 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=26.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCChhhHHHHHHH
Q 009424 467 FFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGL 504 (535)
Q Consensus 467 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~L~~~ 504 (535)
.+..|.+.|.+++|.+++++.......+...-+-|...
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34579999999999999999987644443333444443
No 375
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=21.30 E-value=3.2e+02 Score=23.17 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=4.3
Q ss_pred HhcCCHHHHH
Q 009424 293 IKMGQVEKAE 302 (535)
Q Consensus 293 ~~~g~~~~A~ 302 (535)
++.|+.+-+.
T Consensus 142 ~~~~~~~~v~ 151 (261)
T 2xai_A 142 CENQQRACVK 151 (261)
T ss_dssp HHTTCHHHHH
T ss_pred HHhCCHHHHH
Confidence 3445544333
No 376
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.10 E-value=1.4e+02 Score=19.00 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=13.1
Q ss_pred ccccHHHHHHHHHHhHHhccCCCCCCC
Q 009424 434 RERRILEALSCLKGAFAAEGAKSWRPK 460 (535)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~g~~p~ 460 (535)
..|+.+.|+..+-+|. ..+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~----~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMG----EEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSS----CCCCSCC
T ss_pred cCCCHHHHHHHHHcCc----CCCCCCC
Confidence 3456666666666665 4455554
No 377
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=21.08 E-value=3.6e+02 Score=22.87 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=9.1
Q ss_pred HHHHhcCCCHhHHHHHHH
Q 009424 253 LSSCGSQGSTEKMEGVFE 270 (535)
Q Consensus 253 l~~~~~~g~~~~a~~~~~ 270 (535)
+...+..|+.+-+..+++
T Consensus 138 L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 138 LYLACENQQRACVKKLLE 155 (261)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334445566655555444
No 378
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.94 E-value=3.8e+02 Score=22.63 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 009424 369 EGMEKIFEEWLSVKSSYD-PRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKP 420 (535)
Q Consensus 369 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 420 (535)
+....+|..|...|+.-. ...|......+-..|++.+|..+|+.-++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355556666655554422 3445555555556666666666666555554444
Done!