BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009425
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/514 (68%), Positives = 438/514 (85%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
+ KSRL GL+A K+++ A KAVA ++TSLGP G+DKM+ DGDVT+TNDGATIL MD
Sbjct: 1 DRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMD 60
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
VD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R
Sbjct: 61 VDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR 120
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
IA+EHL++I+ + + EPL+QT TTL SK+VN C R++AEIAV AVL VAD++R+
Sbjct: 121 IAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRR 180
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
DV+ +LIKVEGKVGGRLEDT+LI G+ VDKD SHPQMPK++E+AKIAILTCPFEPPKPKT
Sbjct: 181 DVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
KHK+D+ +VE F+ L++ E++ F++M+++ K+ GA L +CQWGFDDEANHLL+ +LPAV
Sbjct: 241 KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAV 300
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
RWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRA
Sbjct: 301 RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRA 360
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV AD+ P
Sbjct: 361 VTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPT 420
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
+EQYA+RAFADAL+ IPMALAENSG+ PI+T++ V+ +Q++E NP GIDC GTNDM+
Sbjct: 421 LEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMK 480
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVISP 532
Q+V ETLIGK+QQI LATQ+V+MILKIDD+ P
Sbjct: 481 HQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/536 (55%), Positives = 413/536 (77%), Gaps = 8/536 (1%)
Query: 3 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDG 62
+A DE GRPFI+++ Q K R GL+A+K+++ A ++VA I++TSLGP+G+DK+L SPDG
Sbjct: 20 VAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDG 79
Query: 63 DVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLER 122
++TITNDGATIL QM++DN+IAKL+V+LS+SQD EIGDGTTGVVV+A +LL+QA +L+++
Sbjct: 80 EITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQK 139
Query: 123 GIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRR 180
GIHPI+IA G++ A+++A+ LE ++L + L++ T+L SK+V++ R
Sbjct: 140 GIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDR 199
Query: 181 LAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRI- 239
AE+AV+AV+ V D +RKDV+ DLIK++G+VGG + D++LI G+ +DKD SHPQMPK +
Sbjct: 200 FAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVL 259
Query: 240 -----ENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGAT 294
+ K+AILTCPFEPPKPKTKHK+DI +VE++Q L+ EQ F +M+ K GA
Sbjct: 260 PKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGAD 319
Query: 295 LVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGL 354
+VICQWGFDDEANHLL+ +LPAVRWVGG ELE IAI+T GRIVPRFQ+L+ +KLG
Sbjct: 320 VVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSR 379
Query: 355 VREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSI 414
+ E+ FGTT+DRML IE ++ VT F+RG NKM+++E +R++HD+LCV RNL++++ +
Sbjct: 380 IYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRV 439
Query: 415 VYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVK 474
VYGGGAAE+ S+AV AD+ G++QYA R FA ALD IPM LAENSGL PI TLS +K
Sbjct: 440 VYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLK 499
Query: 475 NQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
++Q++E N G+DC G+NDM+E V + IGK+QQILLATQ+ +MILKID+VI
Sbjct: 500 SKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/513 (42%), Positives = 313/513 (61%), Gaps = 5/513 (0%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
E R G DAQ+ N+ AG+ +A +R++LGPKGMDKML GDV +TNDG TIL +M
Sbjct: 4 ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMS 63
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
V++ AK+++E++++Q+ E+GDGTT VV+AG LL +AE+LL++ +HP + +GY+ A++
Sbjct: 64 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQ 123
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
A E L+ IA E G D E L + MT++ K + K +LAEI V+AV AV D E K
Sbjct: 124 KAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK 181
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
V+ DLIK+E K G ++DTELI G+ VDK+ QMPK++ +AKIA+L C E + +T
Sbjct: 182 -VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 240
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
++ I K +QE+K DMV + K GA ++ CQ G DD A H L + A
Sbjct: 241 DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 300
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
R V ++E +A ATG ++ ++L+ + LG AGLV E+ + D M+++E C + +A
Sbjct: 301 RRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI--SGDSMIFVEECKHPKA 358
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VT+ IRG + +IEE R++ DA+ V I + IV GGG+ E+ S+ + A+ G
Sbjct: 359 VTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG 418
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
EQ A+RAFADAL+ IP LAEN+GL IE L V+ N G++ DM
Sbjct: 419 REQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMC 478
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
E V E L K Q I A + +M+L+IDDVI+
Sbjct: 479 ENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIA 511
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/513 (42%), Positives = 313/513 (61%), Gaps = 5/513 (0%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
E R G DAQ+ N+ AG+ +A +R++LGPKGMDKML GDV +TNDG TIL +M
Sbjct: 10 ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMS 69
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
V++ AK+++E++++Q+ E+GDGTT VV+AG LL +AE+LL++ +HP + +GY+ A++
Sbjct: 70 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQ 129
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
A E L+ IA E G D E L + MT++ K + K +LAEI V+AV AV D E K
Sbjct: 130 KAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK 187
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
V+ DLIK+E K G ++DTELI G+ VDK+ QMPK++ +AKIA+L C E + +T
Sbjct: 188 -VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 246
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
++ I K +QE+K DMV + K GA ++ CQ G DD A H L + A
Sbjct: 247 DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 306
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
R V ++E +A ATG ++ ++L+ + LG AGLV E+ + D M+++E C + +A
Sbjct: 307 RRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI--SGDSMIFVEECKHPKA 364
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VT+ IRG + +IEE R++ DA+ V I + IV GGG+ E+ S+ + A+ G
Sbjct: 365 VTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG 424
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
EQ A+RAFADAL+ IP LAEN+GL IE L V+ N G++ DM
Sbjct: 425 REQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMC 484
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
E V E L K Q I A + +M+L+IDDVI+
Sbjct: 485 ENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIA 517
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/513 (42%), Positives = 311/513 (60%), Gaps = 5/513 (0%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
E R G DAQ+ N+ AG+ +A +R++LGPKGMDKML GDV +TNDG TIL +M
Sbjct: 10 ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMS 69
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
V++ AK+++E++++Q+ E+GDGTT VV+AG LL +AE+LL++ +HP + +GY+ A++
Sbjct: 70 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQ 129
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
A E L+ IA E G D E L + MT++ K + K +LAEI V+AV AV D E K
Sbjct: 130 KAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK 187
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
V+ DLIK+E K G ++DTELI G+ VDK+ QMPK++ +AKIA+L C E + +T
Sbjct: 188 -VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 246
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
++ I K +QE+K DMV + K GA ++ CQ G DD A H L + A
Sbjct: 247 DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 306
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
R V ++E +A ATG ++ L+ + LG AGLV E+ + D M+++E C + +A
Sbjct: 307 RRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI--SGDSMIFVEECKHPKA 364
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VT+ IRG + +IEE R++ DA+ V I + IV GGG+ E+ S+ + A+ G
Sbjct: 365 VTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG 424
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
EQ A+RAFADAL+ IP LAEN+GL IE L V+ N G++ DM
Sbjct: 425 REQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMC 484
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
E V E L K Q I A + +M+L+IDDVI+
Sbjct: 485 ENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIA 517
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/513 (42%), Positives = 311/513 (60%), Gaps = 5/513 (0%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
E R G DAQ+ N+ AG+ +A +R++LGPKGMDKML GDV +TNDG TIL +M
Sbjct: 4 ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMS 63
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
V++ AK+++E++++Q+ E+GDGTT VV+AG LL +AE+LL++ +HP + +GY+ A++
Sbjct: 64 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQ 123
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
A E L+ IA E G D E L + MT++ K + K +LAEI V+AV AV D E K
Sbjct: 124 KAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK 181
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
V+ DLIK+E K G ++DTELI G+ VDK+ QMPK++ +AKIA+L C E + +T
Sbjct: 182 -VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 240
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
++ I K +QE+K DMV + K GA ++ CQ G DD A H L + A
Sbjct: 241 DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 300
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
R V ++E +A ATG ++ L+ + LG AGLV E+ + D M+++E C + +A
Sbjct: 301 RRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI--SGDSMIFVEECKHPKA 358
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VT+ IRG + +IEE R++ DA+ V I + IV GGG+ E+ S+ + A+ G
Sbjct: 359 VTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG 418
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
EQ A+RAFADAL+ IP LAEN+GL IE L V+ N G++ DM
Sbjct: 419 REQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMC 478
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
E V E L K Q I A + +M+L+IDDVI+
Sbjct: 479 ENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIA 511
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/527 (41%), Positives = 329/527 (62%), Gaps = 13/527 (2%)
Query: 9 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITN 68
G+P ++L E R G DAQ+ N+ A + +A +RT+LGPKGMDKML GD+ +TN
Sbjct: 6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 69 DGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIR 128
DGATIL+++D+ + AK+MVE++++QD E GDGTT VV+AG LL +AE+LL++ IHP
Sbjct: 64 DGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 129 IAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKA 188
I +GY +A+ A E L+ IA + + +D E L++ T++ K K LA++AV+A
Sbjct: 124 ITKGYALAAEKAQEILDEIAIRVDP--DDEETLLKIAATSITGKNAESHKELLAKLAVEA 181
Query: 189 VLAVADLERKD----VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKI 244
V VA E+KD V+LD IK E K G +E++EL+ G+ +DK++ HP+MPKR+ENAKI
Sbjct: 182 VKQVA--EKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKI 239
Query: 245 AILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDD 304
A++ E K +T K++I + ++ + +QE+K DMV GA +V Q G DD
Sbjct: 240 ALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDD 299
Query: 305 EANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ 364
A H L + AVR V ++E +A ATG +IV ++LTPE LG A +V E+
Sbjct: 300 LAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG-- 357
Query: 365 DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIA 424
+ M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++ GGA EI
Sbjct: 358 ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIE 417
Query: 425 CSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPN 484
+I +D A + G E AI FADAL IP LAEN+GL +E L V ++ +
Sbjct: 418 LAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLG 476
Query: 485 CGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
GID + DM E+ + E L K+Q I A++ MIL+IDDVI+
Sbjct: 477 IGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 523
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/527 (41%), Positives = 328/527 (62%), Gaps = 13/527 (2%)
Query: 9 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITN 68
G+P ++L E R G DAQ+ N+ A + +A +RT+LGPKGMDKML GD+ +TN
Sbjct: 6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 69 DGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIR 128
D ATIL+++D+ + AK+MVE++++QD E GDGTT VV+AG LL +AE+LL++ IHP
Sbjct: 64 DCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 129 IAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKA 188
I +GY +A+ A E L+ IA + + +D E L++ T++ K K LA++AV+A
Sbjct: 124 ITKGYALAAEKAQEILDEIAIRVDP--DDEETLLKIAATSITGKNAESHKELLAKLAVEA 181
Query: 189 VLAVADLERKD----VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKI 244
V VA E+KD V+LD IK E K G +E++EL+ G+ +DK++ HP+MPKR+ENAKI
Sbjct: 182 VKQVA--EKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKI 239
Query: 245 AILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDD 304
A++ E K +T K++I + ++ + +QE+K DMV GA +V Q G DD
Sbjct: 240 ALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDD 299
Query: 305 EANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ 364
A H L + AVR V ++E +A ATG +IV ++LTPE LG A +V E+
Sbjct: 300 LAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG-- 357
Query: 365 DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIA 424
+ M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++ GGA EI
Sbjct: 358 ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIE 417
Query: 425 CSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPN 484
+I +D A + G E AI FADAL IP LAEN+GL +E L V ++ +
Sbjct: 418 LAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLG 476
Query: 485 CGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
GID + DM E+ + E L K+Q I A++ MIL+IDDVI+
Sbjct: 477 IGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 523
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/527 (41%), Positives = 328/527 (62%), Gaps = 13/527 (2%)
Query: 9 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITN 68
G+P ++L E R G DAQ+ N+ A + +A +RT+LGPKGMDKML GD+ +TN
Sbjct: 6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 69 DGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIR 128
D ATIL+++D+ + AK+MVE++++QD E GDGTT VV+AG LL +AE+LL++ IHP
Sbjct: 64 DCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 129 IAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKA 188
I +GY +A+ A E L+ IA + + +D E L++ T++ K K LA++AV+A
Sbjct: 124 IIKGYALAAEKAQEILDEIAIRVDP--DDEETLLKIAATSITGKNAESHKELLAKLAVEA 181
Query: 189 VLAVADLERKD----VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKI 244
V VA E+KD V+LD IK E K G +E++EL+ G+ +DK++ HP+MPKR+ENAKI
Sbjct: 182 VKQVA--EKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKI 239
Query: 245 AILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDD 304
A++ E K +T K++I + ++ + +QE+K DMV GA +V Q G DD
Sbjct: 240 ALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDD 299
Query: 305 EANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ 364
A H L + AVR V ++E +A ATG +IV ++LTPE LG A +V E+
Sbjct: 300 LAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG-- 357
Query: 365 DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIA 424
+ M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++ GGA EI
Sbjct: 358 ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIE 417
Query: 425 CSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPN 484
+I +D A + G E AI FADAL IP LAEN+GL +E L V ++ +
Sbjct: 418 LAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLG 476
Query: 485 CGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
GID + DM E+ + E L K+Q I A++ MIL+IDDVI+
Sbjct: 477 IGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 523
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/525 (38%), Positives = 324/525 (61%), Gaps = 8/525 (1%)
Query: 9 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITN 68
G P I+L+ E SR G +A +AN++A KAV L+++ GP+GMDKML GD+TITN
Sbjct: 13 GIPVIILK--EGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITN 70
Query: 69 DGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIR 128
DGATIL++MD+ + AKL+V++++ QD E DGT V+ +G L+++AE LL + +HP
Sbjct: 71 DGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTI 130
Query: 129 IAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKA 188
I GY+ A +A++ ++ +AQ +ND + L + MT+L+SK V + +A+I VKA
Sbjct: 131 IISGYKKAEEVALQTIQELAQT--VSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKA 188
Query: 189 VLAVADL--ERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAI 246
V VA+L ++ V+LD I++ K GG + DT+L+YGI VDK++ HP MPKR+ENAKIA+
Sbjct: 189 VTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIAL 248
Query: 247 LTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEA 306
+ E KP+ ++ I+ + Q +E+ + V K GA ++ICQ G D+ A
Sbjct: 249 IDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVA 308
Query: 307 NHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDR 366
L + + AVR +LE +A ATGGR+V E++ + LG A L+ E+ G +D+
Sbjct: 309 QSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVG--EDK 366
Query: 367 MLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACS 426
M+++E N ++++I IRGG + +++ET+R++ DAL ++I++ + GGGA EI +
Sbjct: 367 MVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIA 426
Query: 427 IAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCG 486
+ A + G EQ A+ A+A+AL+++ L EN+G PI+ L +++ ENN G
Sbjct: 427 KKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYG 486
Query: 487 IDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
ID DM ++ V E + K I AT+ ++L+IDDV+S
Sbjct: 487 IDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVS 531
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 214/523 (40%), Positives = 313/523 (59%), Gaps = 11/523 (2%)
Query: 11 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDG 70
P ++L+ E R +G +AQ+ N+ A KA+A +RT+LGPKGMDKML GD+ I+NDG
Sbjct: 7 PILVLK--EGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDG 64
Query: 71 ATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIA 130
ATIL++MDV++ AK++VE+S++QD +GDGTT VV++G LL+QAE LL++G+HP I+
Sbjct: 65 ATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVIS 124
Query: 131 EGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 190
GY +A A + ++ IA+K D L + +T L+ K LA++ VKAV
Sbjct: 125 NGYRLAVNEARKIIDEIAEKS----TDDATLRKIALTALSGKNTGLSNDFLADLVVKAVN 180
Query: 191 AVADLERKDVNLDL--IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILT 248
AVA++ +D IKV+ K GG + DT+ I GI +DK+ H +MP ++NAKIA++
Sbjct: 181 AVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALID 240
Query: 249 CPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANH 308
E K + + KV I K Q QE F MV+K K GA +V+CQ G DD A H
Sbjct: 241 SALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQH 300
Query: 309 LLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRML 368
L + AVR V ++E +A ATG +IV +LTP LG+A V E+ G DRM
Sbjct: 301 YLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG--DDRMT 358
Query: 369 YIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIA 428
++ C N +AV+I IRGG ++ E +R+++DA+ V + ++GGGA E ++
Sbjct: 359 FVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMR 418
Query: 429 VDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID 488
+ A+ G EQ AI AFA AL+ IP LAEN+G+ PI TL +K + + G+D
Sbjct: 419 LAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADD-EKGRISVGVD 477
Query: 489 CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
++ G DM+ + V + L K + A +V MIL+IDDVI+
Sbjct: 478 LDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIA 520
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/514 (40%), Positives = 303/514 (58%), Gaps = 27/514 (5%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
E R G DAQ+ N+ AG+ +A +R++LGPKGMDKML GDV +TNDG TIL +M
Sbjct: 4 ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMS 63
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
V++ AK+++E++++Q+ E+GDGTT VV+AG LL +AE+LL++ +HP + +GY+ A++
Sbjct: 64 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQ 123
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
A E L+ IA E G D E L + MT++ K + K +LAEI V+AV AV D E K
Sbjct: 124 KAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK 181
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
V+ DLIK+E K G ++DTELI G+ VDK+ QMPK++ +AKIA+L C E
Sbjct: 182 -VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE------ 234
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
+ + DMV + K GA ++ CQ G DD A H L + A
Sbjct: 235 ----------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 278
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
R V ++E +A ATG ++ ++L+ + LG AGLV E+ + D M+++E C + +A
Sbjct: 279 RRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI--SGDSMIFVEECKHPKA 336
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VT+ IRG + +IEE R++ DA+ V I + IV GGG+ E+ S+ + A+ G
Sbjct: 337 VTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG 396
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
EQ A+RAFADAL+ IP LAEN+GL IE L V+ N G++ DM
Sbjct: 397 REQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMC 456
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVISP 532
E V E L K Q I A + +M+L+IDDVI+
Sbjct: 457 ENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAA 490
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/513 (40%), Positives = 303/513 (59%), Gaps = 27/513 (5%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
E R G DAQ+ N+ AG+ +A +R++LGPKGMDKML GDV +TNDG TIL +M
Sbjct: 10 ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMS 69
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
V++ AK+++E++++Q+ E+GDGTT VV+AG LL +AE+LL++ +HP + +GY+ A++
Sbjct: 70 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQ 129
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
A E L+ IA E G D E L + MT++ K + K +LAEI V+AV AV D E K
Sbjct: 130 KAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK 187
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
V+ DLIK+E K G ++DTELI G+ VDK+ QMPK++ +AKIA+L C E
Sbjct: 188 -VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE------ 240
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
+ + DMV + K GA ++ CQ G DD A H L + A
Sbjct: 241 ----------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 284
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
R V ++E +A ATG ++ ++L+ + LG AGLV E+ + D M+++E C + +A
Sbjct: 285 RRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI--SGDSMIFVEECKHPKA 342
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VT+ IRG + +IEE R++ DA+ V I + IV GGG+ E+ S+ + A+ G
Sbjct: 343 VTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG 402
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
EQ A+RAFADAL+ IP LAEN+GL IE L V+ N G++ DM
Sbjct: 403 REQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMC 462
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
E V E L K Q I A + +M+L+IDDVI+
Sbjct: 463 ENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIA 495
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/514 (40%), Positives = 301/514 (58%), Gaps = 27/514 (5%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
E R G DAQ+ N+ AG+ +A +R++LGPKGMDKML GDV +TNDG TIL +M
Sbjct: 4 ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMS 63
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
V++ AK+++E++++Q+ E+GDGTT VV+AG LL +AE+LL++ +HP + +GY+ A++
Sbjct: 64 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQ 123
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
A E L+ IA E G D E L + MT++ K + K +LAEI V+AV AV D E K
Sbjct: 124 KAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK 181
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
V+ DLIK+E K G ++DTELI G+ VDK+ QMPK++ +AKIA+L C E
Sbjct: 182 -VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE------ 234
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
+ + DMV + K GA ++ CQ G DD A H L + A
Sbjct: 235 ----------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 278
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
R V ++E +A ATG ++ L+ + LG AGLV E+ + D M+++E C + +A
Sbjct: 279 RRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI--SGDSMIFVEECKHPKA 336
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VT+ IRG + +IEE R++ DA+ V I + IV GGG+ E+ S+ + A+ G
Sbjct: 337 VTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG 396
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
EQ A+RAFADAL+ IP LAEN+GL IE L V+ N G++ DM
Sbjct: 397 REQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMC 456
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVISP 532
E V E L K Q I A + +M+L+IDDVI+
Sbjct: 457 ENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAA 490
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/514 (40%), Positives = 302/514 (58%), Gaps = 27/514 (5%)
Query: 19 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
E R G DAQ+ N+ AG+ +A +R++LGPKGMDKML GDV +TNDG TIL +M
Sbjct: 4 ENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMS 63
Query: 79 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
V++ AK+++E++++Q+ E+GDGTT VV+AG LL +AE+LL++ +HP + +GY+ A++
Sbjct: 64 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQ 123
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
A E L+ IA E G D E L + MT++ K + K +LAEI V+AV AV D E K
Sbjct: 124 KAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK 181
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
V+ DLIK+E K G ++DTELI G+ VDK+ QMPK++ +AKIA+L C E
Sbjct: 182 -VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE------ 234
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
+ + DMV + K GA ++ CQ G DD A H L + A
Sbjct: 235 ----------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 278
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
R V ++E +A ATG ++ ++L+ + LG AGLV E+ + D M+++E C + +A
Sbjct: 279 RRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI--SGDSMIFVEECKHPKA 336
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
VT+ IRG + +IEE R++ A+ V I + IV GGG+ E+ S+ + A+ G
Sbjct: 337 VTMLIRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG 396
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
EQ A+RAFADAL+ IP LAEN+GL IE L V+ N G++ DM
Sbjct: 397 REQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMC 456
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVISP 532
E V E L K Q I A + +M+L+IDDVI+
Sbjct: 457 ENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAA 490
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 348 bits (894), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 211/525 (40%), Positives = 313/525 (59%), Gaps = 9/525 (1%)
Query: 9 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITN 68
G+P +L+ E R G DA K N+ A A++ +R+SLGP+GMDKML GD+ ITN
Sbjct: 4 GQPIFILK--EGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITN 61
Query: 69 DGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIR 128
DG TIL++MDV++ AK+MVE+S++QD +GDGTT V++AG LL+QA+ L+ + +HP
Sbjct: 62 DGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTV 121
Query: 129 IAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKA 188
I+EGY MAS A ++ I+ K G ++ L++ T+LNSK + K +LAEI+ +A
Sbjct: 122 ISEGYRMASEEAKRVIDEISTK--IGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEA 179
Query: 189 VLAVADLE--RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAI 246
V +VA+L + V+ D I+V K GG ++DT+LI GI VDK+ HP MP +++AKIA+
Sbjct: 180 VKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIAL 239
Query: 247 LTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEA 306
L P E KP+ + I+ Q QE+ +MV K K VGA +VI Q G DD A
Sbjct: 240 LDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMA 299
Query: 307 NHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDR 366
H L + AVR V +++ +A ATG IV E++ LG A V + G +D
Sbjct: 300 QHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG--EDY 357
Query: 367 MLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACS 426
M ++ C N +AV+I +RG + +++E +RSI D+L V + + + + GGGA +
Sbjct: 358 MTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIA 417
Query: 427 IAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCG 486
+ + A + G +Q AI FADA++ IP ALAEN+GL PI+ L ++ + + N G
Sbjct: 418 FRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAK-GNKTYG 476
Query: 487 IDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
I+ DM + V E + +Q I AT+ MIL+IDDVI+
Sbjct: 477 INVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA 521
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 337 bits (864), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 194/507 (38%), Positives = 309/507 (60%), Gaps = 12/507 (2%)
Query: 32 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELS 91
+N+SA KAVA +RTSLGPKGMDKM+Q GDVTITNDGATIL+QM V + A+++VELS
Sbjct: 15 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELS 74
Query: 92 RSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKF 151
++QD E GDGTT VV++AGSLL+ KLL++GIHP I+E ++ A +E L +++
Sbjct: 75 KAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPV 134
Query: 152 EFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD-LERKDVNLDLIKVEGK 210
E L+D E L+ + T+LNSK+V++ L+ ++V AV+ V D V+L IK+ K
Sbjct: 135 E--LSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKK 192
Query: 211 VGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKF 270
+GG ++D EL+ G+ + + +++ + R+E AKI ++ PK +++ + +
Sbjct: 193 LGGTIDDCELVEGLVLTQKVANSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQM 251
Query: 271 QTLRQQEQKYFDDMVQKCKDVGATLVICQW-----GFDDEANHLLMHRNLPAVRWVGGVE 325
+ ++E+ Y ++V++ K G +++ Q D A H L + V+ + +
Sbjct: 252 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIERED 311
Query: 326 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIR 384
+E I G + V + T + LG A L E S + +++ I CA+ + VTI +R
Sbjct: 312 IEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGS-GKLIKITGCASPGKTVTIVVR 370
Query: 385 GGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAI 444
G NK++IEE +RSIHDALCV R L++ +++ GGGA EI ++ + + G+E Y I
Sbjct: 371 GSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCI 430
Query: 445 RAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFE 504
RAFADA++ IP LAEN+GL PI T++ ++N+ + GI+ G +++ E+ V +
Sbjct: 431 RAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTTGINVRKGGISNILEELVVQ 489
Query: 505 TLIGKQQQILLATQVVKMILKIDDVIS 531
L+ + LAT+ V+ ILKIDDV++
Sbjct: 490 PLLVSVSALTLATETVRSILKIDDVVN 516
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 284/479 (59%), Gaps = 8/479 (1%)
Query: 56 MLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQ 115
ML GD+ ITNDGATIL++MD+ + AK++VE+S++QD E+GDGTT V++G LL +
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 116 AEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVN 175
AE+L+ +G+H I+EGY A+ E LE I +D L++ T + K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETIT--IAISPDDEAALIKIAGTAITGKGAE 118
Query: 176 RCKRRLAEIAVKAVLAVADLERKDVNLDL---IKVEGKVGGRLEDTELIYGITVDKDMSH 232
K +L+ + VKAV ++ + E + +++ IK+E + GG ++D+ELI G+ +DK+ SH
Sbjct: 119 AYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSH 178
Query: 233 PQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVG 292
P MP+++ENAKI +L+CP E K + ++ I + + Q QE+K +M +K G
Sbjct: 179 PNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASG 238
Query: 293 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKA 352
A +V CQ G DD A + + + AVR V +L+ ++ TG I+ ++T E +G A
Sbjct: 239 ANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTA 298
Query: 353 GLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNN 412
GLV EK +M Y+ C NS+AVT+ + GG + +++ +++DAL V +I +
Sbjct: 299 GLVEEKEV--RGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDG 356
Query: 413 SIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSA 472
+V GGG++E+ S+ + A G EQ A+ FA+AL+ IP+ALAEN+GL PI+ +
Sbjct: 357 KVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVE 416
Query: 473 VKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
+++Q + N N G++ DM E +V E L K Q I A + MIL+IDDV++
Sbjct: 417 LRSQH-EKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVA 474
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 185/517 (35%), Positives = 312/517 (60%), Gaps = 12/517 (2%)
Query: 21 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD 80
K++ + + +KAN+ A ++VA +RTSLGPKGMDKM+++ G++ I+NDG TIL+QM +
Sbjct: 12 KNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAIL 71
Query: 81 NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIA 140
+ +A+++VE+S +QD E GDGTT VV++ G+LL AE+LL +GIHP IA+ ++ A++ +
Sbjct: 72 HPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRS 131
Query: 141 VEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDV 200
V+ L + K L+D E LV+ T+L+SK+V++ LA +AV +VL ++D K+V
Sbjct: 132 VDILLEMCHK--VSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNV 189
Query: 201 NLDLIKVEGKVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAILTCPFEPPKPKTK 259
+L+ I++ KVGG ++DTE+I G+ + + + P R E AKI ++ PPKP T+
Sbjct: 190 DLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTE 249
Query: 260 HKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGF-----DDEANHLLMHRN 314
+ + ++ + + ++E+ Y ++ +K K +++ Q +D A H L N
Sbjct: 250 NNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLN 309
Query: 315 LPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHC 373
+ V+ + E+E ++ G + + + T ++L A LV E S G+ R+ I +
Sbjct: 310 IMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNN 369
Query: 374 ANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAA 433
V++ IRG N M+I+ET+RS+HDALCV R L++ ++ GGGA EI S + A
Sbjct: 370 NARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEA 429
Query: 434 DRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNP-NCGIDCNDV 492
GV+ + + FA AL+ IP LAEN+GL I+ ++ ++++ EN N GI
Sbjct: 430 RSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKH--ENGELNDGISVRRS 487
Query: 493 GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 529
GT + E+++ + ++ I LA++ VK IL+IDD+
Sbjct: 488 GTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 524
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 173/513 (33%), Positives = 289/513 (56%), Gaps = 8/513 (1%)
Query: 23 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQ 82
R G Q N++A K +A I+RT LGPK M KML P G + +TNDG IL ++ V +
Sbjct: 4 RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 63
Query: 83 IAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVE 142
AK M+E+SR+QD E+GDGTT V+++AG +L AE LE+ +HP + Y A +
Sbjct: 64 AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 123
Query: 143 HLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDV 200
L++I+ ++ + ++ +++ +K+++R IA+ AV V E RK++
Sbjct: 124 TLKKIS--IPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 181
Query: 201 NL-DLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTK 259
++ +VE GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L E K +++
Sbjct: 182 DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 241
Query: 260 HKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 319
++I E F + Q E++Y + + + +VI + G D A H LM N+ A+R
Sbjct: 242 TDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIR 301
Query: 320 WVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRA 378
V + IA A G RIV R +EL E +G AGL+ K G + +I C + +A
Sbjct: 302 RVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIG--DEYFTFITECKDPKA 359
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
TI +RG +K ++ E +R++ DA+ V RN++ + +V GGGA+E+A + A+ + G
Sbjct: 360 CTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTG 419
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
VEQ+ RA A AL+ IP L +N G I L++++ + +EN G++ DM+
Sbjct: 420 VEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMK 479
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
E ++E L K Q A + ++L+IDD++S
Sbjct: 480 ELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 512
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 184/592 (31%), Positives = 308/592 (52%), Gaps = 82/592 (13%)
Query: 11 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDG 70
P + + +E R G AQ +N++A KAVA ++RT LGPK M KML P G + +TNDG
Sbjct: 4 PVVFMNASQE--RTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDG 61
Query: 71 ATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQ-AEKLLERGIHPIRI 129
IL ++DV + AK M+ELSR+QD E+GDGTT V+++AG +L Q A L+E+ IHP+ I
Sbjct: 62 HAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVII 121
Query: 130 AEGYEMASRIAVEHLERIAQKFEFGLND--LEPLVQTCMTTLNSKMVNRCKRRLAEIAVK 187
+ + A A+E ++++++ + ND ++ L+Q ++ +K V ++ E+A+
Sbjct: 122 IQALKKALTDALEVIKQVSKPVDVE-NDAAMKKLIQ---ASIGTKYVIHWSEKMCELALD 177
Query: 188 AVLAVADLERKDV--------NLDL-----IKVEGKVGGRLEDTELIYGITVDKDMSHPQ 234
AV V RKD+ N ++ ++VE GG + D+ ++ G+ ++KD+ HP+
Sbjct: 178 AVKTV----RKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPK 233
Query: 235 MPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGAT 294
M + IEN ++ +L CP E K +++ ++I+ E + + Q E++ M ++ V T
Sbjct: 234 MSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPT 293
Query: 295 LVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLG-KAG 353
LVI + G D A H L+ +R V + IA TG IV R ++L +G G
Sbjct: 294 LVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCG 353
Query: 354 LVR-----------------------------EKSFGTTQDRMLYIEHCANSR------- 377
L + EK G + + +I A +R
Sbjct: 354 LFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSS 413
Query: 378 ------------------AVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGG 419
A TI +RGG+K ++ E R++ DA+ VARN++ + S+ GGG
Sbjct: 414 GALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGG 473
Query: 420 AAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIR 479
A E+A S+ + A + G++Q+ +A ADA++ IP L +N+G PI LS ++ +
Sbjct: 474 ATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHA- 532
Query: 480 ENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
+ N GID + DM ++E + KQQ + A + ++L++DD++S
Sbjct: 533 QGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVS 584
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/511 (31%), Positives = 274/511 (53%), Gaps = 12/511 (2%)
Query: 25 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIA 84
+G+ +N+SA + +A +RT+LGP+GMDK++ G TI+NDGATIL+ +DV + A
Sbjct: 8 QGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAA 67
Query: 85 KLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 144
K +V++++SQD E+GDGTT V ++A L+Q + +E G+HP I + A+++AV +
Sbjct: 68 KTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKI 127
Query: 145 ERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNL 202
+ IA K E + + L + MT L+SK++++ K A++ V AV+ + DL + L
Sbjct: 128 KEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL----LQL 183
Query: 203 DLIKVEGKVGGRLEDTELIYGITVDKDMSHPQM---PKRIENAKIAILTCPFEPPKPKTK 259
+I ++ GG LE+++L+ G+ K S+ PK+ N IA+L E K
Sbjct: 184 KMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDN 243
Query: 260 HKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 319
++ + TVE +Q + E D ++K GA +V+ + D A R++
Sbjct: 244 AEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAG 303
Query: 320 WVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAV 379
V +L+ +A GG I L+ + LG+ + E G +R + C ++
Sbjct: 304 RVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGG--ERYNFFTGCPKAKTC 361
Query: 380 TIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGV 439
TI +RGG + +EET+RS+HDA+ + R I+N+S+V GGGA E+ S + + PG
Sbjct: 362 TIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGK 421
Query: 440 EQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMRE 499
+Q I A+A AL+ IP L +N+G L+ ++ + + G+D N D E
Sbjct: 422 QQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARH-AQGGMWYGVDINTEDIADNFE 480
Query: 500 QNVFETLIGKQQQILLATQVVKMILKIDDVI 530
V+E + + + A++ +I+ +D+ I
Sbjct: 481 AFVWEPAMVRINALTAASEAACLIVSVDETI 511
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 165/501 (32%), Positives = 272/501 (54%), Gaps = 16/501 (3%)
Query: 39 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDY 96
A+ +++++LGPKGMDK+L S D + +TNDGATIL+ + VDN AK++V++SR QD
Sbjct: 21 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDD 80
Query: 97 EIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLN 156
E+GDGTT V V+A LL +AE L+ + IHP I G+ A++ A + L + + G +
Sbjct: 81 EVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQAL--LNSAVDHGSD 138
Query: 157 DL---EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGG 213
++ + L+ TTL+SK++ K ++AV+AVL + + NL+ I V K+GG
Sbjct: 139 EVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVIKKLGG 194
Query: 214 RLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQT 272
L D+ L G +DK + Q PKRIENAKI I + K K +V +D+ K
Sbjct: 195 SLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAE 253
Query: 273 LRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIA 332
+ E++ + V++ G I + + L + A+ V +E +A+
Sbjct: 254 IEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALV 313
Query: 333 TGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIE 392
TGG I F KLG L+ E G +D++++ A A TI +RG + +++
Sbjct: 314 TGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILD 371
Query: 393 ETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALD 452
E +RS+HDALCV ++++ VYGGG +E+ + AV A R PG E A+ ++A AL
Sbjct: 372 EAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALR 431
Query: 453 AIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQ 512
+P +A+N+G + ++ ++ E G+D + DM + E+ K+Q
Sbjct: 432 MLPTIIADNAGYDSADLVAQLRAAH-SEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQV 490
Query: 513 ILLATQVVKMILKIDDVISPS 533
+L A + ++IL++D++I +
Sbjct: 491 LLSAAEAAEVILRVDNIIKAA 511
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 179/519 (34%), Positives = 283/519 (54%), Gaps = 29/519 (5%)
Query: 33 NVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSR 92
NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+
Sbjct: 15 NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAD 74
Query: 93 SQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 152
QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV + I++
Sbjct: 75 LQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY---ISENLI 131
Query: 153 FGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV--ADLE---RKDVN-LDL 204
++L + L+ T+++SK++ A + V AVLA+ D+ R VN +++
Sbjct: 132 INTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINV 191
Query: 205 IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDI 264
+K G+ ++E + LI G ++ + MPKRI NAKIA L + K K +V I
Sbjct: 192 LKAHGR--SQME-SMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVI 248
Query: 265 DTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGV 324
EK +RQ+E + +QK GA +++ G DD + AVR V
Sbjct: 249 TDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKR 308
Query: 325 ELELIAIATGGRIVPRFQELTPEK------LGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
+L+ IA A+G ++ L E+ LG+A V ++ D ++ I++ +
Sbjct: 309 DLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERI--CDDELILIKNTKARTS 366
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
++ +RG N M +E +RS+HDALCV + ++ + S+V GGGA E A SI ++ A
Sbjct: 367 ASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGS 426
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQP---IETLSAVKNQ-QI---RENNPNCGIDCND 491
EQ AI FA +L IP LA N+ + L A N+ Q+ R+N G+D +
Sbjct: 427 REQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVN 486
Query: 492 VGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
D ++ VFE I K + + AT+ IL+IDD+I
Sbjct: 487 GKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 525
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 176/515 (34%), Positives = 274/515 (53%), Gaps = 27/515 (5%)
Query: 29 AQKANVSA---GKAVARILRTSLGPKGMDKMLQSPDGDV-TITNDGATILEQMDVDNQIA 84
A+ A +SA AV +++++LGPKGMDK+LQS + +TNDGATIL+ + +DN A
Sbjct: 15 AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAA 74
Query: 85 KLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-IHPIRIAEGYEMASRIAVEH 143
K++V +S+ QD E+GDGTT V V++ LL +AEKL+++ IHP I EGY +AS A++
Sbjct: 75 KVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDA 134
Query: 144 LERIA-----QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
L + A K F E L+ TTL+SK++++ K AE+A A+L + +
Sbjct: 135 LTKAAVDNSHDKTMF----REDLIHIAKTTLSSKILSQDKDHFAELATNAILRL----KG 186
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK- 257
NL+ I++ +GG+L D+ L G + K + Q PKRIENAKI I + K K
Sbjct: 187 STNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKI 245
Query: 258 --TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 315
TK KVD + K L + E++ + + K G I + D L +
Sbjct: 246 FGTKFKVD--STAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGI 303
Query: 316 PAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN 375
++ +E +A+ TGG +V F E + KLG+ ++ E G + L C
Sbjct: 304 NSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLG--EQPFLKFSGCKA 361
Query: 376 SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADR 435
A TI +RG ++E +RS+HDAL V + V GGG AE+ S AVD A
Sbjct: 362 GEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQN 421
Query: 436 YPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTN 495
G + A+ AFA AL +P LA+N+G E +S +++ I G+D N+
Sbjct: 422 IDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRS-SIYNGISTSGLDLNNGTIA 480
Query: 496 DMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
DMR+ + E+ K+ + A++ +++L++D++I
Sbjct: 481 DMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNII 515
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 156/505 (30%), Positives = 265/505 (52%), Gaps = 12/505 (2%)
Query: 32 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELS 91
+N++A AV L+ +LGP G D ++ + + TI+NDGATIL+ +DV + AK +V++S
Sbjct: 28 SNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDIS 87
Query: 92 RSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKF 151
R+QD E+GDGTT V ++AG L+++A+ LE GI I +GY A +AVE + +A
Sbjct: 88 RAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDI 147
Query: 152 EFGLNDLEPLVQTCM-TTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGK 210
+ L++ C T ++SK+++ ++ V AVL+ L+R D++ LI ++
Sbjct: 148 TSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLS---LDRNDLDDKLIGIKKI 204
Query: 211 VGGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTV 267
GG +E++ I G+ K S+ Q PK+ N KI L E K +V ++ V
Sbjct: 205 PGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHV 264
Query: 268 EKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELE 327
E +Q + E + + +++ ++ GA +V+ + D A RN+ V ++
Sbjct: 265 EDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMN 324
Query: 328 LIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGN 387
+ A GG I ++ PE LG L E G+ +R + C ++ T+ +RGG
Sbjct: 325 RVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGS--ERYNLFQGCPQAKTCTLLLRGGA 382
Query: 388 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAF 447
+ +I E +RS+HDA+ + + ++N IV GGGA E+ S + + G +Q I AF
Sbjct: 383 EQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAF 442
Query: 448 ADALDAIPMALAENSGLQPIETLSAVKNQQIR-ENNPNCGIDCNDVGTNDMREQNVFETL 506
A AL+ IP L EN+G IE L+ ++ + E + ++G N + V+E
Sbjct: 443 AKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAK--FVWEPA 500
Query: 507 IGKQQQILLATQVVKMILKIDDVIS 531
+ K + AT+ +IL +D+ I+
Sbjct: 501 LVKINALNSATEATNLILSVDETIT 525
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 231 bits (590), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 168/518 (32%), Positives = 266/518 (51%), Gaps = 22/518 (4%)
Query: 25 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIA 84
R A N+SA + + +LRT+LGPKG KML S GD+ +T DG +L +M + + A
Sbjct: 7 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTA 66
Query: 85 KLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL 144
L+ +++ +QD GDGTT V++ G LL+QA+ + G+HP I EG+E A A++ L
Sbjct: 67 SLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFL 126
Query: 145 ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDL 204
E++ E D E L+ T+L +K+ L E V ++LA+ +++D +DL
Sbjct: 127 EQVKVSKEM---DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI---KKQDEPIDL 180
Query: 205 IKVE-GKVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKV 262
VE ++ + E DT LI G+ +D HP M KR+E+A I E K +
Sbjct: 181 FMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGF 240
Query: 263 DIDTVEKFQTLRQQEQKYFDDMVQK--------CKDVG-ATLVICQWGFDDEANHLLMHR 313
+ E+ + L + E+K+ +D V+K C D +VI Q G D + L
Sbjct: 241 FYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKE 300
Query: 314 NLPAVRWVGGVELELIAIATGGRIVPRFQELTPE-KLGKAGLVREKSFGTTQDRMLYIEH 372
+ A+R +E + +A GG + +L P+ LG AG V E + G +++ +IE
Sbjct: 301 GIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLG--EEKFTFIEK 357
Query: 373 CANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAA 432
C N R+VT+ I+G NK + + K +I D L +N I + +V G GA E+A + A+
Sbjct: 358 CNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKY 417
Query: 433 ADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDV 492
G Q ++AFADAL IP LA+NSG ETL V+ + E+ G+D N
Sbjct: 418 KPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH-SESGQLVGVDLNTG 476
Query: 493 GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
E +++ K+Q + T + IL +D+++
Sbjct: 477 EPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 514
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 164/534 (30%), Positives = 267/534 (50%), Gaps = 31/534 (5%)
Query: 23 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQ 82
++ G D + NV A AVA ++++SLGP G+DKML GD T+TNDGATIL +DV +
Sbjct: 19 KISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHP 78
Query: 83 IAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVE 142
K++VEL++ QD EIGDGTT VV++A LL++A +L++ IHP I G+ +A R A+
Sbjct: 79 AGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIR 138
Query: 143 HLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV------ADLE 196
+ + L E L+ T+++SK++ + + V A+LAV +++
Sbjct: 139 FINEVLSTSVDTLGK-ETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIK 197
Query: 197 RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIE--NAKIAILTCPFEPP 254
++++K GK ++ L+ G ++ ++ MPKRI N KIA L +
Sbjct: 198 YPVKAVNVLKAHGKSA---TESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKA 254
Query: 255 KPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRN 314
+ +++ID E+ + +R++E + V+K D GA +V+ G DD +
Sbjct: 255 RMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAK 314
Query: 315 LPAVRWVGGVELELIAIATGGRIVPRFQELTPEK------LGKAGLVREKSFGTTQDRML 368
+ VR +L IA ATG +V L E+ LG V + F + D +
Sbjct: 315 IMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKF--SDDECI 372
Query: 369 YIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIA 428
I+ + + +I +RG N ++E +RS+HD+L V + + + ++V GGG E A +I
Sbjct: 373 LIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIY 432
Query: 429 VDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQI---------- 478
+D A EQ AI FA AL IP LA N+ E ++ +++
Sbjct: 433 LDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDV 492
Query: 479 -RENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
R + N G+D D V E I K + + A + IL+ID +I+
Sbjct: 493 KRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMIT 546
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/524 (27%), Positives = 265/524 (50%), Gaps = 19/524 (3%)
Query: 24 LRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI 83
LR A K NV++ + + +L T+LGPKG KML G++ +T DG +L +M + +
Sbjct: 13 LRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPT 72
Query: 84 AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEH 143
A L+ + +QD GDGTT VV + G LL QA + ++ G+HP I +G+E+A + +++
Sbjct: 73 AVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKF 132
Query: 144 LERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLD 203
L+ ND E L+Q ++L +K+ L I AVL+V D + +++L
Sbjct: 133 LDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLH 192
Query: 204 LIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVD 263
++++ +DT I G+ +D HP MP R++NA + IL E K +
Sbjct: 193 MVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFF 252
Query: 264 IDTVEKFQTLRQQEQKYFDDMVQKCKDV----------GATLVICQWGFDDEANHLLMHR 313
+ ++ L E+K+ D ++K D+ ++I Q G D + +
Sbjct: 253 YSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKH 312
Query: 314 NLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHC 373
N+ A+R +E + + TGG ++L+P+ LG +GLV +++ G +++ Y+
Sbjct: 313 NILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG--EEKFTYVTEN 370
Query: 374 ANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAA 433
+ ++ TI I+G + +TK ++ D L N++++ +I+ G GA IA S + +A
Sbjct: 371 TDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSAN 430
Query: 434 DRYPGVE---QYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQ----QIRENNPNCG 486
G + + I AFA+AL IP L +NSG P++ L+ V+++ Q + G
Sbjct: 431 MNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVG 490
Query: 487 IDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
+D N + D + ++++ + I AT + +L D+++
Sbjct: 491 VDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 162/516 (31%), Positives = 267/516 (51%), Gaps = 11/516 (2%)
Query: 19 EEKSRLRGLD-AQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQM 77
E GL+ A N+ A K +A+ RT+ GP GM+KM+ + + +TND ATIL ++
Sbjct: 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 78 DVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMAS 137
+V + AK++V S Q+ E+GDGT V+V AG+LLE AE+LL G+ + EGYE+A
Sbjct: 61 EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 138 RIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLER 197
+ A E L + L D++ + T++ SK + LA++ +A +++ +
Sbjct: 121 KKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGN-EVFLAKLIAQACVSIFP-DS 178
Query: 198 KDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK 257
N+D I+V +G + + +++G+ K+ +++AKIA+ +CPF+ +
Sbjct: 179 GHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITE 236
Query: 258 TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPA 317
TK V I + E+ + E+ D V+ D GA +V+ D A H N+
Sbjct: 237 TKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIML 296
Query: 318 VRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSR 377
VR +L + G +PR E++G V G TQ ++ +H
Sbjct: 297 VRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQ--VVVFKHEKEDG 354
Query: 378 AV-TIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRY 436
A+ TI +RG ++++ +R++ D + + L R+ +V GGGA EI + + + +
Sbjct: 355 AISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETC 414
Query: 437 PGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCND--VGT 494
PG+EQYAI+ FA+A +AIP ALAENSG++ E +S + +E N N G+D
Sbjct: 415 PGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVH-QEGNKNVGLDIEAEVPAV 473
Query: 495 NDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
DM E V +T +GK I LAT +L++D +I
Sbjct: 474 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 509
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 201 bits (511), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 256/515 (49%), Gaps = 17/515 (3%)
Query: 33 NVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSR 92
+++A + + ++ TS+GP G +K++ + G + ITND AT+L ++D+ + K++V +
Sbjct: 31 SIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATE 90
Query: 93 SQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 152
Q ++GDGT V+++AG LL +EKL+ G+ + I +GY MA + ++ L+ +
Sbjct: 91 QQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEI 150
Query: 153 FGLNDLEPLVQTCMTTLNSKMVNR--CKRRLAEIAVKAVLAVADL--ERKDVNLDLIKVE 208
ND L++ ++SK L AV VL VA E N+D I+V
Sbjct: 151 TDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVV 210
Query: 209 GKVGGRLEDTELIYGITVDKDM-SHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTV 267
+GG L ++ +I G+ +++ H + + K+A+ TCP + +TK V +
Sbjct: 211 KIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNA 270
Query: 268 EKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELE 327
++ + E+K D M+++ D+G ++ G + A H L + ++ EL
Sbjct: 271 QEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELR 330
Query: 328 LIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGN 387
+ G +PR TPE+LG V+ G + + E SR TI +RG
Sbjct: 331 RLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGAT 390
Query: 388 KMMIEETKRSIHDALCVARNLIR--NNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIR 445
+ +++ +R+I D + + L++ ++ G GA EI + +R PG+ Q AI+
Sbjct: 391 QNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIK 450
Query: 446 AFADALDAIPMALAENSGLQPIETL-------SAVKNQQIRENNPNCGIDCN---DVGTN 495
FA A + +P LAE +GL E L + + ++ ++ G+D + D G
Sbjct: 451 QFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVK 510
Query: 496 DMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
D+RE+N+++ L K+ I +AT+ +L ID +I
Sbjct: 511 DIREENIYDMLATKKFAINVATEAATTVLSIDQII 545
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 223 GITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFD 282
GI +DK+ H +MP ++NAKIA++ E K + + KV I K Q QE F
Sbjct: 3 GIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFK 62
Query: 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQ 342
MV+K K GA +V+CQ G DD A H L + AVR V ++E +A ATG +IV
Sbjct: 63 QMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLD 122
Query: 343 ELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN 375
+LTP LG+A V E+ G DRM ++ C N
Sbjct: 123 DLTPSVLGEAETVEERKIG--DDRMTFVMGCKN 153
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 223 GITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFD 282
GI VDK+ HP MP +++AKIA+L P E KP+ + I+ Q QE+
Sbjct: 3 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLR 62
Query: 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQ 342
+MV K K VGA +VI Q G DD A H L + AVR V +++ +A ATG IV
Sbjct: 63 EMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTID 122
Query: 343 ELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN 375
E++ LG A V + G +D M ++ N
Sbjct: 123 EISSSDLGTAERVEQVKVG--EDYMTFVTGSKN 153
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 215 LEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLR 274
+ED+ ++ G+ ++KD++HP+M + I+N +I +L E K +++ ++I E F +
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRIL 60
Query: 275 QQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATG 334
Q E++Y + + + +VI + G D A H LM N+ A+R V + IA A G
Sbjct: 61 QMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACG 120
Query: 335 GRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGN 387
RIV R +EL + +G AGL+ K G + +I C + +A TI +RG +
Sbjct: 121 ARIVSRPEELREDDVGTGAGLLEIKKIG--DEYFTFITDCKDPKACTILLRGAS 172
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 126/550 (22%), Positives = 212/550 (38%), Gaps = 104/550 (18%)
Query: 39 AVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQ 94
AVA ++ +LGP+G + +L+ G TIT DG T+ +++++++ + A+L+ E++
Sbjct: 21 AVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKT 80
Query: 95 DYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFG 154
+ GDGTT V+A +++ + K + G +P+ + G E A AVE ++ +A E
Sbjct: 81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE-- 138
Query: 155 LNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGR 214
D + + + + N V + +AD K +I VE +
Sbjct: 139 --DRKAIEEVATISANDPEVGKL--------------IADAMEKVGKEGIITVEES---K 179
Query: 215 LEDTELIY--GITVDKDMSHPQM---PKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEK 269
+TEL + G DK P P+ +E A+L F I VEK
Sbjct: 180 SLETELKFVEGYQFDKGYISPYFVTNPETME----AVLEDAF------------ILIVEK 223
Query: 270 FQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVE---- 325
+ + ++++ G L+I + EA L+ L V V+
Sbjct: 224 ----KVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGF 279
Query: 326 -------LELIAIATGGRIVP-----RFQELTPEKLGKAGLVR----------------- 356
L+ IA TGG ++ + + T LG+A VR
Sbjct: 280 GDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKED 339
Query: 357 --------EKSFGTTQD---RMLYIEHCANSRAVTIFIRGG--NKMMIEETKRSIHDALC 403
+K TT R E A IR G + ++E K DAL
Sbjct: 340 IEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALN 399
Query: 404 VARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSG 463
R + IV GGG + AV+ + G E + AL+ +AEN+G
Sbjct: 400 ATRAAV-EEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAG 458
Query: 464 LQPIETLSAVKNQQI--RENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVK 521
+ +V QQI NP G + DM E + + + + A +
Sbjct: 459 YE-----GSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGA 513
Query: 522 MILKIDDVIS 531
+IL + V++
Sbjct: 514 LILTTEAVVA 523
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 39 AVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQ 94
A+A ++ +LGPKG + +L+ G TITNDG +I +++++++ A+L+ E+++
Sbjct: 21 ALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT 80
Query: 95 DYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 152
D GDGTT V+A +L+ + + + G +P+ + G E A E L + A++ E
Sbjct: 81 DDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVE 138
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A +AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 134
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A +AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 134
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A +AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 134
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A +AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 134
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A +AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 134
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A +AVE L+ ++
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 135
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A +AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALS 134
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALS 134
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALS 134
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALS 134
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALS 134
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A AVE L+ ++
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALS 134
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A AVE L+ ++
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALS 135
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95
+A ++ +LGPKG + +L G TIT DG ++ +++++++ A+++ E++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA 148
GDGTT V+A +++ + K + G++P+ + G + A AVE L+ ++
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALS 135
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 113/498 (22%), Positives = 205/498 (41%), Gaps = 102/498 (20%)
Query: 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQD 95
+A ++ +LGPKG + ++ G IT DG ++ +++++ +N A+++ E++ +
Sbjct: 23 LADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTN 82
Query: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGL 155
E GDGTT V+A +++ + K + G++P+ + G ++A+ VE ++ A+ +
Sbjct: 83 DEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARP----V 138
Query: 156 NDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRL 215
ND + Q + N + + +++AE ++R N +I VE G
Sbjct: 139 NDSSEVAQVGTISANGE--SFIGQQIAEA----------MQRVG-NEGVITVEENKGMET 185
Query: 216 EDTELIYGITVDKDMSHP-------QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVE 268
E E++ G+ D+ P +M +E+A I + +P V
Sbjct: 186 E-VEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQP---------MVP 235
Query: 269 KFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVG-----G 323
+++ Q ++ + ATLV+ N L + AV+ G
Sbjct: 236 LLESVIQSQKPLLIVAEDVEGEALATLVV---------NKLRGGLKIAAVKAPGFGDRRK 286
Query: 324 VELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTT--------------- 363
L+ IAI TGG+++ + + +T + LG+A V TT
Sbjct: 287 AMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARV 346
Query: 364 -------------QDRMLYIEHCANSRAVTIFIRGGNKMMIE--ETKRSIHDALCVARNL 408
DR E A IR G IE E K + DAL R
Sbjct: 347 SQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAA 406
Query: 409 IRNNSIVYGGGAAEIACSIAVD----AAADRYPGVEQYAIRAFADALDAIPMALAENSGL 464
++ IV GGG A + + ++ A +D+ G I AL+A +AEN+G+
Sbjct: 407 VQEG-IVVGGGVALVQGAKVLEGLSGANSDQDAG-----IAIIRRALEAPMRQIAENAGV 460
Query: 465 QPIETLSAVKNQQIRENN 482
AV ++RE++
Sbjct: 461 D-----GAVVAGKVRESS 473
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 62 GDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAE 117
G TITNDG +I +++++++ A+L+ E+++ D GDGTT V+A +L+ +
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 118 KLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 152
+ + G +P+ + G E A E L + A++ E
Sbjct: 62 RNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVE 96
>pdb|3JVD|A Chain A, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
pdb|3JVD|B Chain B, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
Length = 333
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 341 FQELTPEKLGKAG-----LVREKSFGTTQDRMLYIEHCANSRAVTIF-------IRGGNK 388
F +LT LG +G LV E+S TTQ+RM I H A+ + + G +
Sbjct: 162 FFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGEE 221
Query: 389 MMIEETKRSIHDALCVA 405
M + DAL VA
Sbjct: 222 MAQVVFNNGLPDALIVA 238
>pdb|2BA0|I Chain I, Archaeal Exosome Core
pdb|2BA0|H Chain H, Archaeal Exosome Core
pdb|2BA0|G Chain G, Archaeal Exosome Core
pdb|2BA1|G Chain G, Archaeal Exosome Core
pdb|2BA1|H Chain H, Archaeal Exosome Core
pdb|2BA1|I Chain I, Archaeal Exosome Core
pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
Length = 259
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 206 KVEGKVGGRLEDTELIYGITVDKDMSHPQMPKR---IENAKIAILTCP-FEPPKP 256
K EG +L DT+++ G+ + +P P R I NA++ L P FEP P
Sbjct: 44 KAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPP 98
>pdb|1B4F|A Chain A, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|B Chain B, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|C Chain C, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|D Chain D, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|E Chain E, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|F Chain F, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|G Chain G, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|H Chain H, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1F0M|A Chain A, Monomeric Structure Of The Human Ephb2 Sam (Sterile Alpha
Motif) Domain
Length = 82
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 468 ETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQ--NVFETLIGKQQQILLATQVVK 521
E L A+K Q +E+ N G DV + M E V TL G Q++IL + QV++
Sbjct: 16 EWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMR 71
>pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 259
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 206 KVEGKVGGRLEDTELIYGITVDKDMSHPQMPKR---IENAKIAILTCP-FEPPKP 256
K EG +L DT+++ G+ + P P R I NA++ L P FEP P
Sbjct: 44 KAEGSALVKLGDTQVVVGVKMQPGEPAPDTPDRGVIIVNAELVPLASPTFEPGPP 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,898,376
Number of Sequences: 62578
Number of extensions: 615704
Number of successful extensions: 1788
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1600
Number of HSP's gapped (non-prelim): 65
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)