Query 009425
Match_columns 535
No_of_seqs 165 out of 1353
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 12:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03339 TCP1_epsilon TCP-1 (CT 100.0 5E-109 1E-113 886.1 60.7 523 9-531 4-526 (526)
2 TIGR02343 chap_CCT_epsi T-comp 100.0 1E-108 3E-113 882.0 59.6 530 4-533 3-532 (532)
3 TIGR02339 thermosome_arch ther 100.0 6E-107 1E-111 870.0 59.7 506 22-532 10-519 (519)
4 TIGR02344 chap_CCT_gamma T-com 100.0 3E-106 7E-111 865.3 58.9 508 22-533 10-522 (525)
5 TIGR02347 chap_CCT_zeta T-comp 100.0 6E-106 1E-110 858.9 60.5 507 22-533 10-526 (531)
6 KOG0361 Chaperonin complex com 100.0 3E-108 7E-113 782.9 38.4 517 8-533 2-523 (543)
7 cd03335 TCP1_alpha TCP-1 (CTT 100.0 9E-106 2E-110 861.5 59.3 507 23-533 3-526 (527)
8 cd03343 cpn60 cpn60 chaperonin 100.0 1E-105 3E-110 860.9 59.5 506 22-532 9-516 (517)
9 TIGR02342 chap_CCT_delta T-com 100.0 3E-105 7E-110 854.3 59.1 505 24-533 5-517 (517)
10 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1E-104 2E-109 853.3 60.3 506 22-534 10-521 (522)
11 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2E-104 5E-109 848.0 60.7 504 22-533 7-514 (517)
12 PTZ00212 T-complex protein 1 s 100.0 2E-104 3E-109 851.3 59.4 514 10-533 6-526 (533)
13 cd03338 TCP1_delta TCP-1 (CTT 100.0 2E-104 4E-109 850.4 58.8 505 23-532 3-515 (515)
14 TIGR02345 chap_CCT_eta T-compl 100.0 1E-103 2E-108 843.7 58.3 506 22-534 12-521 (522)
15 TIGR02340 chap_CCT_alpha T-com 100.0 2E-103 4E-108 844.4 60.3 509 22-534 6-531 (536)
16 TIGR02341 chap_CCT_beta T-comp 100.0 1E-102 2E-107 833.6 60.2 504 22-533 8-515 (519)
17 TIGR02346 chap_CCT_theta T-com 100.0 3E-102 7E-107 832.0 59.6 504 23-533 12-520 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2E-102 3E-107 826.5 56.3 478 22-533 6-483 (484)
19 KOG0358 Chaperonin complex com 100.0 3E-103 7E-108 747.4 36.6 505 24-532 22-533 (534)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2E-100 5E-105 810.3 52.7 465 22-531 10-479 (480)
21 cd03341 TCP1_theta TCP-1 (CTT 100.0 4.2E-97 9E-102 783.5 54.0 463 25-532 5-471 (472)
22 cd00309 chaperonin_type_I_II c 100.0 8.7E-97 2E-101 783.5 52.8 462 23-531 3-464 (464)
23 COG0459 GroL Chaperonin GroEL 100.0 8.3E-96 2E-100 769.0 48.7 500 22-534 5-515 (524)
24 KOG0363 Chaperonin complex com 100.0 2.6E-96 6E-101 697.1 38.6 514 10-533 2-519 (527)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.2E-93 4.8E-98 765.6 51.9 483 40-534 1-485 (485)
26 PRK00013 groEL chaperonin GroE 100.0 5.8E-92 1.3E-96 750.2 51.2 460 22-534 4-525 (542)
27 PRK12849 groEL chaperonin GroE 100.0 1E-91 2.3E-96 748.2 51.2 458 22-534 4-524 (542)
28 PTZ00114 Heat shock protein 60 100.0 7.4E-91 1.6E-95 745.5 52.4 460 22-534 16-541 (555)
29 cd03344 GroEL GroEL_like type 100.0 1.4E-90 3.1E-95 737.9 50.5 454 23-531 3-519 (520)
30 PRK12851 groEL chaperonin GroE 100.0 3.5E-90 7.6E-95 737.3 51.4 458 22-533 5-524 (541)
31 TIGR02348 GroEL chaperonin Gro 100.0 4.7E-90 1E-94 735.5 51.0 459 22-535 3-524 (524)
32 KOG0364 Chaperonin complex com 100.0 2E-92 4.4E-97 685.2 28.3 520 8-534 1-522 (527)
33 PRK12850 groEL chaperonin GroE 100.0 8E-90 1.7E-94 735.0 51.0 457 22-534 5-525 (544)
34 PRK12852 groEL chaperonin GroE 100.0 2E-89 4.4E-94 733.9 50.8 459 22-534 5-526 (545)
35 KOG0360 Chaperonin complex com 100.0 3E-90 6.5E-95 676.3 30.5 505 22-531 13-534 (545)
36 CHL00093 groEL chaperonin GroE 100.0 4E-88 8.8E-93 721.4 47.1 461 22-534 4-526 (529)
37 PRK14104 chaperonin GroEL; Pro 100.0 3.4E-87 7.3E-92 714.2 50.5 458 22-533 5-525 (546)
38 KOG0362 Chaperonin complex com 100.0 1.6E-87 3.5E-92 661.7 44.0 519 1-534 1-522 (537)
39 PLN03167 Chaperonin-60 beta su 100.0 7.7E-87 1.7E-91 714.7 45.6 464 22-534 58-582 (600)
40 KOG0359 Chaperonin complex com 100.0 6.5E-82 1.4E-86 611.1 28.8 500 24-534 13-516 (520)
41 KOG0357 Chaperonin complex com 100.0 1.6E-74 3.5E-79 543.9 25.6 398 1-535 1-398 (400)
42 KOG0356 Mitochondrial chaperon 100.0 1.2E-58 2.6E-63 464.4 33.3 462 22-532 18-536 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 4.7E-41 1E-45 327.7 28.1 237 172-415 14-257 (261)
44 cd03333 chaperonin_like chaper 100.0 4E-37 8.6E-42 292.6 24.8 208 159-411 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 4.3E-24 9.2E-29 235.7 16.6 241 175-422 331-577 (1598)
46 COG1433 Uncharacterized conser 70.6 19 0.00041 30.7 6.9 52 283-335 56-107 (121)
47 PF02579 Nitro_FeMo-Co: Dinitr 70.3 14 0.00031 29.4 6.0 39 283-322 44-82 (94)
48 cd00851 MTH1175 This uncharact 62.8 19 0.0004 29.3 5.4 39 283-322 54-92 (103)
49 PRK13600 putative ribosomal pr 54.3 61 0.0013 25.7 6.6 49 282-330 19-71 (84)
50 cd00562 NifX_NifB This CD repr 52.8 39 0.00085 27.2 5.7 38 284-322 53-90 (102)
51 PRK07283 hypothetical protein; 45.0 96 0.0021 25.3 6.7 49 284-335 26-78 (98)
52 cd03465 URO-D_like The URO-D _ 42.5 2.2E+02 0.0047 28.6 10.4 45 276-320 205-249 (330)
53 cd03308 CmuA_CmuC_like CmuA_Cm 39.3 2.6E+02 0.0056 28.9 10.5 45 266-313 245-289 (378)
54 cd00852 NifB NifB belongs to a 38.8 92 0.002 25.5 5.8 31 291-322 64-94 (106)
55 PRK13601 putative L7Ae-like ri 34.9 1.7E+02 0.0037 23.0 6.3 51 283-336 15-69 (82)
56 PRK07714 hypothetical protein; 34.9 1.7E+02 0.0038 23.8 6.8 50 284-336 26-79 (100)
57 PRK04175 rpl7ae 50S ribosomal 34.4 1.6E+02 0.0034 25.2 6.6 49 284-335 38-91 (122)
58 TIGR03659 IsdE heme ABC transp 33.7 1.1E+02 0.0024 30.1 6.6 52 285-336 84-141 (289)
59 PRK13602 putative ribosomal pr 33.7 1.9E+02 0.004 22.7 6.5 51 283-336 18-72 (82)
60 PRK06683 hypothetical protein; 33.5 1.8E+02 0.004 22.8 6.4 51 283-336 18-72 (82)
61 TIGR02663 nifX nitrogen fixati 32.6 1.5E+02 0.0033 24.9 6.3 50 283-335 56-109 (119)
62 TIGR03677 rpl7ae 50S ribosomal 32.3 1.7E+02 0.0037 24.7 6.4 49 284-335 34-87 (117)
63 cd01143 YvrC Periplasmic bindi 31.8 1.3E+02 0.0029 27.2 6.4 51 285-335 53-110 (195)
64 TIGR00129 fdhD_narQ formate de 31.0 76 0.0016 30.6 4.6 42 283-324 183-224 (237)
65 cd00853 NifX NifX belongs to a 30.2 1.6E+02 0.0035 23.9 5.9 31 291-322 60-90 (102)
66 PRK09534 btuF corrinoid ABC tr 29.7 1.4E+02 0.003 30.7 6.6 52 284-335 111-169 (359)
67 PF02603 Hpr_kinase_N: HPr Ser 28.3 59 0.0013 27.9 3.0 43 278-320 67-111 (127)
68 cd04743 NPD_PKS 2-Nitropropane 28.3 2.1E+02 0.0045 29.0 7.3 55 283-338 73-127 (320)
69 PF01248 Ribosomal_L7Ae: Ribos 28.3 1.1E+02 0.0025 24.3 4.6 51 283-336 22-77 (95)
70 PRK00724 formate dehydrogenase 28.3 1E+02 0.0022 30.3 5.0 42 283-324 212-253 (263)
71 cd01144 BtuF Cobalamin binding 28.1 1.8E+02 0.0038 27.6 6.8 52 285-336 50-108 (245)
72 PTZ00106 60S ribosomal protein 27.3 2.3E+02 0.0049 23.6 6.2 49 284-335 33-86 (108)
73 TIGR03151 enACPred_II putative 26.9 2.5E+02 0.0055 28.1 7.8 56 283-338 78-133 (307)
74 COG3962 Acetolactate synthase 26.0 76 0.0016 33.5 3.7 40 395-435 216-255 (617)
75 PRK03298 hypothetical protein; 25.8 1.6E+02 0.0035 27.9 5.5 37 283-319 167-207 (224)
76 PF09454 Vps23_core: Vps23 cor 24.7 2.9E+02 0.0064 20.6 5.8 44 393-447 19-62 (65)
77 PF00809 Pterin_bind: Pterin b 24.6 1.7E+02 0.0037 27.4 5.7 65 275-339 53-121 (210)
78 PF12846 AAA_10: AAA-like doma 24.5 1.6E+02 0.0035 28.6 5.9 56 281-336 242-302 (304)
79 COG1526 FdhD Uncharacterized p 23.8 1.4E+02 0.0031 29.3 5.0 42 283-324 212-253 (266)
80 COG1504 Uncharacterized conser 23.0 4.2E+02 0.0092 22.2 6.7 51 286-336 55-111 (121)
81 PF02634 FdhD-NarQ: FdhD/NarQ 22.5 1E+02 0.0022 29.7 3.7 41 283-323 183-223 (236)
82 TIGR01496 DHPS dihydropteroate 22.2 3.6E+02 0.0078 26.2 7.6 63 275-339 57-123 (257)
83 COG4359 Uncharacterized conser 21.8 1.8E+02 0.0039 26.8 4.9 43 280-322 77-123 (220)
84 PRK03379 vitamin B12-transport 21.6 2.6E+02 0.0056 27.1 6.6 51 285-335 65-122 (260)
85 COG1358 RPL8A Ribosomal protei 21.5 3.9E+02 0.0084 22.6 6.6 48 283-330 34-86 (116)
86 PRK05583 ribosomal protein L7A 21.4 3.9E+02 0.0086 22.0 6.6 50 284-336 25-78 (104)
87 cd01138 FeuA Periplasmic bindi 20.6 2.3E+02 0.005 26.9 6.0 51 285-336 59-113 (248)
88 PF12554 MOZART1: Mitotic-spin 20.2 1.7E+02 0.0036 20.6 3.4 22 110-131 21-42 (48)
89 PRK01018 50S ribosomal protein 20.1 4.5E+02 0.0098 21.3 6.6 49 284-335 24-77 (99)
No 1
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.5e-109 Score=886.14 Aligned_cols=523 Identities=75% Similarity=1.179 Sum_probs=494.9
Q ss_pred CCceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHH
Q 009425 9 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMV 88 (535)
Q Consensus 9 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~ 88 (535)
+.|..+++++...+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~ 83 (526)
T cd03339 4 GRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLV 83 (526)
T ss_pred CCCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHH
Confidence 44544555542224788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHH
Q 009425 89 ELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTT 168 (535)
Q Consensus 89 ~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~ts 168 (535)
+++++|++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|++++++++.+..+.+.|.++|+|+
T Consensus 84 ~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~ts 163 (526)
T cd03339 84 ELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTS 163 (526)
T ss_pred HHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988765444678899999999
Q ss_pred hccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEe
Q 009425 169 LNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILT 248 (535)
Q Consensus 169 l~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~ 248 (535)
+++|+.+.+.+.|++++++|+..+.+.....+|.+.|+|.+++||+++||++++|++|++++.+++||+..+||||++++
T Consensus 164 l~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~ 243 (526)
T cd03339 164 LGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILT 243 (526)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEE
Confidence 99999989999999999999998865433456778999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHH
Q 009425 249 CPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELEL 328 (535)
Q Consensus 249 ~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ 328 (535)
++|++++++++.++.++++++++.+.++|+++++++++++++.|++||+++++|+|.|+++|.++||++++++++++|+|
T Consensus 244 ~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~Ler 323 (526)
T cd03339 244 CPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIEL 323 (526)
T ss_pred ecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 009425 329 IAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNL 408 (535)
Q Consensus 329 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~ 408 (535)
||++|||+++++++++++..+|+|+.|++..+|.+++++++|++|++++.+||+|||+|+.+++|+||+++|||++++++
T Consensus 324 Ia~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 324 IAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred HHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875578899999999999999999999999999999999999999999
Q ss_pred hhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeee
Q 009425 409 IRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID 488 (535)
Q Consensus 409 l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid 488 (535)
+++|++|||||++|++++..|++++...++.+++++++|++||+.||++|++|||+|+.+++.+|+..|...++.++|+|
T Consensus 404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 483 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID 483 (526)
T ss_pred hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence 99999999999999999999999988888999999999999999999999999999999999999999975556789999
Q ss_pred cCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 009425 489 CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531 (535)
Q Consensus 489 ~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~ 531 (535)
+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 484 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 484 CLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred cCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 9999999999999999999999999999999999999999974
No 2
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-108 Score=881.98 Aligned_cols=530 Identities=73% Similarity=1.145 Sum_probs=497.6
Q ss_pred cccccCCceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHH
Q 009425 4 AFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~ 83 (535)
.++..+.|..++++....+...|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~ 82 (532)
T TIGR02343 3 AFDEYGRPFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI 82 (532)
T ss_pred cccccCCCchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH
Confidence 34444556444555211246789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHH
Q 009425 84 AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQ 163 (535)
Q Consensus 84 ~~ll~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ 163 (535)
++|+++++++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++.+..+.+.|.+
T Consensus 83 akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ 162 (532)
T TIGR02343 83 AKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQ 162 (532)
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887543346788999
Q ss_pred HHHHHhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccce
Q 009425 164 TCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAK 243 (535)
Q Consensus 164 ia~tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~k 243 (535)
+++|++++|+.+.+.+.|++++++|+..+.+.....+|.++|+|.++.||+++||++++|++|++++.+++||+.++|||
T Consensus 163 ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~k 242 (532)
T TIGR02343 163 AAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAK 242 (532)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCc
Confidence 99999999998889999999999999998654344678899999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecCh
Q 009425 244 IAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGG 323 (535)
Q Consensus 244 I~ll~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~ 323 (535)
|++++++|++++++++.++.+++++++..+.+.|+++++++++++++.|++||+++++|+|.++++|.++||++++++++
T Consensus 243 I~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~ 322 (532)
T TIGR02343 243 IAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGG 322 (532)
T ss_pred EEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Q 009425 324 VELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALC 403 (535)
Q Consensus 324 ~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~ 403 (535)
++|+|||++|||++++++++++++.+|+|+.|++..+|.+.++++++++|++++.+||+|||+|+.+++|+||+++||++
T Consensus 323 ~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~ 402 (532)
T TIGR02343 323 HELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALC 402 (532)
T ss_pred HHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754689999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 009425 404 VARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNP 483 (535)
Q Consensus 404 ~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~ 483 (535)
+++++++++++|||||++|++++++|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|...++.
T Consensus 403 ~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~ 482 (532)
T TIGR02343 403 VVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNP 482 (532)
T ss_pred HHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999754467
Q ss_pred cEeeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 484 NCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 484 ~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
++|+|+.+|.+.||++.|||||+.+|+++|+.|+|+|++|||||++|.++
T Consensus 483 ~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 532 (532)
T TIGR02343 483 HLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISPG 532 (532)
T ss_pred ccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccCC
Confidence 89999999999999999999999999999999999999999999999764
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=5.8e-107 Score=869.96 Aligned_cols=506 Identities=46% Similarity=0.702 Sum_probs=485.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDG 89 (519)
T TIGR02339 10 QRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDG 89 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccc-hhhhhH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMV-NRCKRR 180 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~-~~~~~~ 180 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|++++++++. .+.+.|.++|+|+++||+. +++.++
T Consensus 90 Ttt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~--~~~~~L~~ia~tsl~sk~~~~~~~~~ 167 (519)
T TIGR02339 90 TTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISP--EDRDLLKKVAETSLTGKASAEVTKDK 167 (519)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCc--ccHHHHHHHHHhhhccccccchhHHH
Confidence 9999999999999999999999999999999999999999999999988753 3577899999999999999 789999
Q ss_pred HHHHHHHHHHHhhhh--h-cCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCC
Q 009425 181 LAEIAVKAVLAVADL--E-RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK 257 (535)
Q Consensus 181 la~l~~~a~~~~~~~--~-~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~ 257 (535)
|++++++|+..+++. . ...+|.++|+|.++.|++++||++++|++|++++.++.||+.++||||++++++|++++++
T Consensus 168 ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~ 247 (519)
T TIGR02339 168 LANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTE 247 (519)
T ss_pred HHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccc
Confidence 999999999999752 1 2257888999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 258 TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 258 ~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
.++++.+++++++.++.++|+++++.+++++++.|++||+++++|++.++++|.++||++++++++++|+|||++|||++
T Consensus 248 ~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~i 327 (519)
T TIGR02339 248 IDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKI 327 (519)
T ss_pred cceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeC
Q 009425 338 VPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYG 417 (535)
Q Consensus 338 i~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpG 417 (535)
++++++++++.+|+|+.|+++++|+ ++|++|++|.++..|||+|||+|+.+++|++|+++||++++++++++|++|||
T Consensus 328 i~~~~~l~~~~LG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpG 405 (519)
T TIGR02339 328 VSSIKEITESDLGYAGLVEERKVGD--DKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAG 405 (519)
T ss_pred eCchhhCChhhccCCceEEEEEECC--eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeC
Confidence 9999999999999999999999996 88999999998899999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCccccc
Q 009425 418 GGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDM 497 (535)
Q Consensus 418 GG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~ 497 (535)
||++|++++..|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|. .++.++|+|+.+|++.||
T Consensus 406 GGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~-~~~~~~Gid~~~g~~~d~ 484 (519)
T TIGR02339 406 GGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHE-KGNKNAGINVFTGEIEDM 484 (519)
T ss_pred CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-ccCCceeEEcCCCCccch
Confidence 9999999999999998888899999999999999999999999999999999999999887 346789999999999999
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 009425 498 REQNVFETLIGKQQQILLATQVVKMILKIDDVISP 532 (535)
Q Consensus 498 ~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~ 532 (535)
++.|||||+.+|+++|+.|+|+|++|||||++|++
T Consensus 485 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 485 LELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred hhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 99999999999999999999999999999999863
No 4
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.3e-106 Score=865.27 Aligned_cols=508 Identities=37% Similarity=0.593 Sum_probs=484.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDG 89 (525)
T TIGR02344 10 KRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (525)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRL 181 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 181 (535)
|||+|+|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++++. .+.+.+.++++|++++|+.++|.+.|
T Consensus 90 Ttt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~--~~~~~l~~i~~t~l~sk~~~~~~~~l 167 (525)
T TIGR02344 90 TTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDV--NDDAAMLKLIQSCIGTKFVSRWSDLM 167 (525)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCHHHHHHHHHHhhccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999987753 35678999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh---cCCCCcc-ceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCC
Q 009425 182 AEIAVKAVLAVADLE---RKDVNLD-LIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK 257 (535)
Q Consensus 182 a~l~~~a~~~~~~~~---~~~~~~~-~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~ 257 (535)
++++++|+..+++.. ...+|.+ +|+|++++||+++||++++|++|++++.++.||+.++||||++++++|++++++
T Consensus 168 s~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~ 247 (525)
T TIGR02344 168 CDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGE 247 (525)
T ss_pred HHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccccccccc
Confidence 999999999997542 1244554 489999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 258 TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 258 ~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
.+.++.++++++++.+.++|+++++++++++.+.|++||+++++|++.++++|.++||++++++++++|+|||++|||++
T Consensus 248 ~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~i 327 (525)
T TIGR02344 248 SQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATI 327 (525)
T ss_pred ccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcee-eeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEe
Q 009425 338 VPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVY 416 (535)
Q Consensus 338 i~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvp 416 (535)
++++++++++.+|+ |+.|+++++|+ ++|++|++|++++.|||+|||+|+.+++|+||+++||+++++++++++++||
T Consensus 328 i~~l~~l~~~~lG~~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvp 405 (525)
T TIGR02344 328 VNRPEELRESDVGTGCGLFEVKKIGD--EYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLP 405 (525)
T ss_pred ecchhhCCHhhcCCcCCEEEEEEECC--eEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999 99999999986 8899999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccc
Q 009425 417 GGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTND 496 (535)
Q Consensus 417 GGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d 496 (535)
|||++|++||.+|+++++..++++|+++++|++||+.||++|++|||+|+.+++.+|+..|...++.++|+|+.+|++.|
T Consensus 406 GGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d 485 (525)
T TIGR02344 406 GGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVD 485 (525)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCcccc
Confidence 99999999999999998888999999999999999999999999999999999999999997433678999999999999
Q ss_pred cccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 497 MREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 497 ~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
|++.|||||+.+|+++|+.|+|+|++|||||++|.+.
T Consensus 486 ~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 522 (525)
T TIGR02344 486 MKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGV 522 (525)
T ss_pred chhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcC
Confidence 9999999999999999999999999999999999764
No 5
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.1e-106 Score=858.87 Aligned_cols=507 Identities=33% Similarity=0.490 Sum_probs=483.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
+...|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDG 89 (531)
T TIGR02347 10 ESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDG 89 (531)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRL 181 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 181 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+++ +..+.+.|.++|+|+++||+.+.+.++|
T Consensus 90 TTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~-~~~~~~~l~~ia~tsl~sK~~~~~~~~l 168 (531)
T TIGR02347 90 TTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE-DEVDRELLLNVARTSLRTKLPIDLADQL 168 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhccccchhhHHHH
Confidence 999999999999999999999999999999999999999999999986652 1236788999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcce
Q 009425 182 AEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHK 261 (535)
Q Consensus 182 a~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~~ 261 (535)
++++++|+..+++. +..++.++|++.+..|++.+||++++|++|++++.+++||++++||+|++++++|++++++....
T Consensus 169 s~iv~~Av~~v~~~-~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~ 247 (531)
T TIGR02347 169 TEIVVDAVLAIKKD-GEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSG 247 (531)
T ss_pred HHHHHHHHHHHhhc-CCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCce
Confidence 99999999999753 22477788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc---EEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHH
Q 009425 262 VDIDTVEKFQTLRQQEQKYFDDMVQKCKDVG-------AT---LVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAI 331 (535)
Q Consensus 262 v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~-------~~---lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~ 331 (535)
+.+++++++..+.+.|+++++.++++|++.+ ++ ||+++++|+|.+++||.++||++++++++++|+|||+
T Consensus 248 ~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~ 327 (531)
T TIGR02347 248 FFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTL 327 (531)
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHH
Confidence 9999999999999999999999999999876 25 9999999999999999999999999999999999999
Q ss_pred HhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 009425 332 ATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRN 411 (535)
Q Consensus 332 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~ 411 (535)
+|||++++++++++++.+|+|+.|+++.+|+ ++|++|++|++++.|||+|||+|+.+++|++|+++||++++++++++
T Consensus 328 ~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~--~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~ 405 (531)
T TIGR02347 328 ACGGEALNSVEDLTPECLGWAGLVYETSIGE--EKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIED 405 (531)
T ss_pred HhCCEEecccccCCccccccceEEEEEEECC--eEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999986 88999999999999999999999999999999999999999999999
Q ss_pred CeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCC
Q 009425 412 NSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCND 491 (535)
Q Consensus 412 g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~ 491 (535)
|++|||||++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|. .++.++|+|+.+
T Consensus 406 ~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~-~~~~~~Gid~~~ 484 (531)
T TIGR02347 406 KCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHD-EGGEVVGVDLET 484 (531)
T ss_pred CcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-ccCCceeeeccC
Confidence 9999999999999999999998888999999999999999999999999999999999999999887 456789999999
Q ss_pred CcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 492 VGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 492 ~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
|.+.||++.|||||+.+|+++|++|+++|++|||||++|+..
T Consensus 485 g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~ 526 (531)
T TIGR02347 485 GEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAG 526 (531)
T ss_pred CCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCc
Confidence 999999999999999999999999999999999999998764
No 6
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-108 Score=782.91 Aligned_cols=517 Identities=33% Similarity=0.544 Sum_probs=494.1
Q ss_pred cCCceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHH
Q 009425 8 FGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLM 87 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll 87 (535)
|+.|+..++++. +..+|.-++-+|+.||..+++.++|||||+|+||+|++..|+++|+|||+||||.|++-||+++.+
T Consensus 2 m~~~ii~lkegt--d~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktl 79 (543)
T KOG0361|consen 2 MQPPIILLKEGT--DPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTL 79 (543)
T ss_pred CCCCEEEeeccc--CcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHH
Confidence 355677778876 456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCC--CChhHHHHHH
Q 009425 88 VELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGL--NDLEPLVQTC 165 (535)
Q Consensus 88 ~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~--~~~~~l~~ia 165 (535)
++++++||.++||||||+|+|++++|+++..+++.|+||..|+++|++|...|++.+++++..++... ..++.|+++|
T Consensus 80 Vdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA 159 (543)
T KOG0361|consen 80 VDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCA 159 (543)
T ss_pred HHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998776321 3467899999
Q ss_pred HHHhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCC---CCCcccccc
Q 009425 166 MTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHP---QMPKRIENA 242 (535)
Q Consensus 166 ~tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~---~~~~~~~~~ 242 (535)
.|+++||.+.+..++|+++++||+..+.+ ..+.+.|-|+|++||++.||.+++|+.|.+.|.+. +.|+++.||
T Consensus 160 ~T~lsSKlI~~ek~fF~~MvVDAV~~ld~----~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~Np 235 (543)
T KOG0361|consen 160 ATALSSKLIRQEKEFFAKMVVDAVLTLDN----DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNP 235 (543)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHhhcc----ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCc
Confidence 99999999999999999999999998862 34668999999999999999999999999998875 458899999
Q ss_pred eEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecC
Q 009425 243 KIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVG 322 (535)
Q Consensus 243 kI~ll~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~ 322 (535)
||+++|.+||...++.++++.+.++++|+.+.+.||+.+.+.++++...|+++|++.-.|.|.|.+||++++|+|.+|++
T Consensus 236 kIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~ 315 (543)
T KOG0361|consen 236 KILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVP 315 (543)
T ss_pred eEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHH
Q 009425 323 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDAL 402 (535)
Q Consensus 323 ~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal 402 (535)
.+||.|+..++|+++.++..++.+..||.|..|+++++|. ++|.+|+||+..+.||++|||+-++.++|.+|++|||+
T Consensus 316 ~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~--eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAI 393 (543)
T KOG0361|consen 316 EEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG--ERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAI 393 (543)
T ss_pred HHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc--hhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009425 403 CVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENN 482 (535)
Q Consensus 403 ~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~ 482 (535)
+++|.++++..+|+|||++||+++++||+++..+.+++|+.+.+|++|||.||++||.|+|+|..+++.+||..|. ++.
T Consensus 394 mIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA-~G~ 472 (543)
T KOG0361|consen 394 MIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHA-QGE 472 (543)
T ss_pred HHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhh-cCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 689
Q ss_pred CcEeeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 483 PNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 483 ~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
.|+|+|.+++.+.|+++.+||||..||++++..|+|+|++||.+|+.|..-
T Consensus 473 ~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~ 523 (543)
T KOG0361|consen 473 KWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNP 523 (543)
T ss_pred ceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCC
Confidence 999999999999999999999999999999999999999999999999764
No 7
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.8e-106 Score=861.55 Aligned_cols=507 Identities=34% Similarity=0.511 Sum_probs=481.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCc
Q 009425 23 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGT 102 (535)
Q Consensus 23 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 102 (535)
...|.+++..|++||.+++++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHh-hhccccCCCCChhHHHHHHHHHhccccchhhhhHH
Q 009425 103 TGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER-IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRL 181 (535)
Q Consensus 103 tt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~-~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 181 (535)
||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|++ ++++++. .+.+.|.++|+|+++||+.+.+.++|
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~--~~~~~l~~ia~tsl~sK~~~~~~~~l 160 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDN--LGKESLINVAKTSMSSKIIGADSDFF 160 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCc--cCHHHHHHHHHHHhcccccchhHHHH
Confidence 99999999999999999999999999999999999999999996 7877642 36788999999999999998889999
Q ss_pred HHHHHHHHHHhhh--hhc-CCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCC
Q 009425 182 AEIAVKAVLAVAD--LER-KDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258 (535)
Q Consensus 182 a~l~~~a~~~~~~--~~~-~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~ 258 (535)
++++++|+..++. ..+ ..++.++|+|++..|+++++|++++|++|++++.++.||+.++||||++++++|++++++.
T Consensus 161 s~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 161 ANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCcccc
Confidence 9999999999853 111 2478889999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeec
Q 009425 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIV 338 (535)
Q Consensus 259 ~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii 338 (535)
..++.++++++++.+.++|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||+++
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii 320 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLV 320 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC------CCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 009425 339 PRFQEL------TPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNN 412 (535)
Q Consensus 339 ~~~~~l------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g 412 (535)
++++++ ++.++|+|+.|+++++|+ ++|++|++|++++.|||+|||+|+.+++|++|+++||++++++++++|
T Consensus 321 ~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~--~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~ 398 (527)
T cd03335 321 STLANLEGEETFDPSYLGEAEEVVQERIGD--DELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESN 398 (527)
T ss_pred cChhhcCcccccCHhhCccCceEEEEEECC--eEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 998655 344899999999999986 899999999999999999999999999999999999999999999999
Q ss_pred eEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-------CCcE
Q 009425 413 SIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIREN-------NPNC 485 (535)
Q Consensus 413 ~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~-------~~~~ 485 (535)
++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|.+.. +.++
T Consensus 399 ~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~ 478 (527)
T cd03335 399 SVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWY 478 (527)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceE
Confidence 999999999999999999998888999999999999999999999999999999999999999998542 4579
Q ss_pred eeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 486 GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 486 Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|.+.
T Consensus 479 Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~ 526 (527)
T cd03335 479 GLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLN 526 (527)
T ss_pred eEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecC
Confidence 999999999999999999999999999999999999999999998764
No 8
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.2e-105 Score=860.86 Aligned_cols=506 Identities=47% Similarity=0.714 Sum_probs=486.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
+..+|.+++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 9 ~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 88 (517)
T cd03343 9 QRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDG 88 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRL 181 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 181 (535)
|||+++|+++|++++.+++++|+||..|++||++|.+.+++.|++++.+++. .+.+.+.++|+|+++||+.+.+.+.|
T Consensus 89 Ttt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~~~~~l~~va~ts~~sk~~~~~~~~l 166 (517)
T cd03343 89 TTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDP--DDKDTLRKIAKTSLTGKGAEAAKDKL 166 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCC--CCHHHHHHHHHHhhcccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999988753 36788999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhc--CCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCc
Q 009425 182 AEIAVKAVLAVADLER--KDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTK 259 (535)
Q Consensus 182 a~l~~~a~~~~~~~~~--~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~ 259 (535)
++++++|+..+++... ..+|.++|+|.+++|++++||++++|++|++++.+++||+.++||||++++++|++++++.+
T Consensus 167 ~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~ 246 (517)
T cd03343 167 ADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEID 246 (517)
T ss_pred HHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccc
Confidence 9999999999975421 25778899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeecc
Q 009425 260 HKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVP 339 (535)
Q Consensus 260 ~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~ 339 (535)
+++.+++.+++..+.++|+++++++++++++.|++||+++++|++.++++|.++||++++++++++|+|||++|||++++
T Consensus 247 ~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~ 326 (517)
T cd03343 247 AKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVT 326 (517)
T ss_pred eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCC
Q 009425 340 RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGG 419 (535)
Q Consensus 340 ~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG 419 (535)
++++++++.+|+|+.|++.++|+ ++|++|++|.++..|||+|||+|+.+++|++|+++||++++++++++|++|||||
T Consensus 327 ~~~~l~~~~LG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG 404 (517)
T cd03343 327 NIDDLTPEDLGEAELVEERKVGD--DKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGG 404 (517)
T ss_pred chhhCChhhCCccceEEEEEECC--eEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Confidence 99999999999999999999986 8899999999889999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCccccccc
Q 009425 420 AAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMRE 499 (535)
Q Consensus 420 ~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~ 499 (535)
++|++++..|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|. .++.++|+|+.+|++.||++
T Consensus 405 ~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~-~~~~~~G~d~~~g~~~d~~~ 483 (517)
T cd03343 405 AVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHE-KGNKNAGLDVYTGEVVDMLE 483 (517)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-ccCCceeeecCCCCccchhh
Confidence 99999999999998888999999999999999999999999999999999999998886 34678999999999999999
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 009425 500 QNVFETLIGKQQQILLATQVVKMILKIDDVISP 532 (535)
Q Consensus 500 ~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~ 532 (535)
.|||||+.+|+++|+.|+|+|++|||||++|++
T Consensus 484 ~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 484 KGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred cCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 999999999999999999999999999999965
No 9
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.3e-105 Score=854.32 Aligned_cols=505 Identities=41% Similarity=0.661 Sum_probs=482.1
Q ss_pred hccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCch
Q 009425 24 LRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTT 103 (535)
Q Consensus 24 ~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGtt 103 (535)
..+.+++.+|+.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||||
T Consensus 5 ~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTt 84 (517)
T TIGR02342 5 DKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTT 84 (517)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHHHH
Q 009425 104 GVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAE 183 (535)
Q Consensus 104 t~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~la~ 183 (535)
|+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++. .+.+.|.++++|++++|+.+.+.++|++
T Consensus 85 t~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~l~~va~tsl~sK~~~~~~~~ls~ 162 (517)
T TIGR02342 85 SVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDL--SDREILIKSATTSLSSKVVSQYSSLLAP 162 (517)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCc--cCHHHHHHHHHHHhccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999987653 3678899999999999999999999999
Q ss_pred HHHHHHHHhhhhh-cCCCCccceeEEeccCCCcccceeEeEEEEeccCCC-CCCCcccccceEEEEecCCCCCCCCCcce
Q 009425 184 IAVKAVLAVADLE-RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSH-PQMPKRIENAKIAILTCPFEPPKPKTKHK 261 (535)
Q Consensus 184 l~~~a~~~~~~~~-~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~-~~~~~~~~~~kI~ll~~~l~~~~~~~~~~ 261 (535)
++++|+..+.+.. .+.+|.++|+|.+..||+++||++++|++|++++.+ +.||+.++|+||++++++|++++++...+
T Consensus 163 l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~ 242 (517)
T TIGR02342 163 LAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQ 242 (517)
T ss_pred HHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccce
Confidence 9999999997532 346788999999999999999999999999999998 48999999999999999999999999999
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCC-----CHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 262 VDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 262 v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
+.+.++++++.+.++|+++++++++++++.|++||+|+++| ++.++++|.++||.+++++++++|+|||++|||+
T Consensus 243 ~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ 322 (517)
T TIGR02342 243 VIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCK 322 (517)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCE
Confidence 99999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCC-ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEE
Q 009425 337 IVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS-RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIV 415 (535)
Q Consensus 337 ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~-~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vv 415 (535)
++++++++++..+|+|+.|++.+.|+ .+++++++|+++ +.+||+|||+|+.+++|++|+++||+++++++++++++|
T Consensus 323 ii~~~~~l~~~~LG~~~~v~~~~~~~--~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~V 400 (517)
T TIGR02342 323 PIASIDHFTADKLGSAELVEEVTTDG--GKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLI 400 (517)
T ss_pred EEcchhhcCcccCcCCceEEEEEECC--eEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999999988886 788899999874 899999999999999999999999999999999998899
Q ss_pred eCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCccc
Q 009425 416 YGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTN 495 (535)
Q Consensus 416 pGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~ 495 (535)
||||++|++++.+|+++++..++++|+++++|++||+.||++|++|||+|+.+++.+|+..|. +++.++|+|+.+|+++
T Consensus 401 pGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~-~~~~~~Gid~~~g~i~ 479 (517)
T TIGR02342 401 PGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHA-NGEKYAGISVRKGGIT 479 (517)
T ss_pred ECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-cCCCccceecCCCCcc
Confidence 999999999999999998888899999999999999999999999999999999999999997 5567899999999999
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 496 DMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 496 d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
||++.|||||+.+|+++|+.|+|+|++|||||++|.++
T Consensus 480 d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~ 517 (517)
T TIGR02342 480 DMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR 517 (517)
T ss_pred chhhccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence 99999999999999999999999999999999999763
No 10
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.9e-105 Score=853.29 Aligned_cols=506 Identities=35% Similarity=0.559 Sum_probs=482.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
+...|.+++.+|+.||.+++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDG 89 (522)
T cd03340 10 DTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDG 89 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCC--CChhHHHHHHHHHhccccchhhhh
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGL--NDLEPLVQTCMTTLNSKMVNRCKR 179 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~--~~~~~l~~ia~tsl~sk~~~~~~~ 179 (535)
|||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++... .+.+.+.++|+|+++||+.+.+.+
T Consensus 90 Ttt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~ 169 (522)
T cd03340 90 TTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKE 169 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHH
Confidence 999999999999999999999999999999999999999999999998875321 236779999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCC---CCcccccceEEEEecCCCCCCC
Q 009425 180 RLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQ---MPKRIENAKIAILTCPFEPPKP 256 (535)
Q Consensus 180 ~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~---~~~~~~~~kI~ll~~~l~~~~~ 256 (535)
+|++++++|+..+++ .+|.++|+|+++.|++++||++++|++|++++.+++ ||++++||+|++++++|+++++
T Consensus 170 ~l~~l~~~A~~~v~~----~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 170 FFAKMVVDAVLSLDD----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHHhcc----cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCcc
Confidence 999999999999964 356789999999999999999999999999999875 4899999999999999999999
Q ss_pred CCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 257 KTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 257 ~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
+.+.++.++++++++.+.+.|++++.++++++++.|+++|+++++|+|.+++||.++||++++++++++|+|||++|||+
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ 325 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGS 325 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCE
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEe
Q 009425 337 IVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVY 416 (535)
Q Consensus 337 ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvp 416 (535)
++++++++++..+|+|+.|++.++|+ ++|++|++|..++.+||+|||++...++|++|+++||++++++++++|++||
T Consensus 326 ii~~l~~l~~~~LG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvp 403 (522)
T cd03340 326 IQTTVSNITDDVLGTCGLFEERQVGG--ERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVA 403 (522)
T ss_pred EeeccccCCccccccceEEEEEEECC--EEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-CcEeeecCCCccc
Q 009425 417 GGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENN-PNCGIDCNDVGTN 495 (535)
Q Consensus 417 GGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~-~~~Gid~~~~~i~ 495 (535)
|||++|++++.+|+++++...+++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+|++.
T Consensus 404 GGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~~Gid~~~g~i~ 482 (522)
T cd03340 404 GGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQ-GGGKWYGVDINNEGIA 482 (522)
T ss_pred CcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCeeeeeCCCCccc
Confidence 999999999999999988888999999999999999999999999999999999999999984 44 6899999999999
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 009425 496 DMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 534 (535)
Q Consensus 496 d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~ 534 (535)
||++.|||||+.||+++|+.|+|+|++|||||++|++.+
T Consensus 483 d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 483 DNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred chhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 999999999999999999999999999999999998754
No 11
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.2e-104 Score=848.01 Aligned_cols=504 Identities=36% Similarity=0.550 Sum_probs=480.5
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC--CCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIG 99 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 99 (535)
+...|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|++++|
T Consensus 7 ~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~G 86 (517)
T cd03336 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVG 86 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhC
Confidence 356788999999999999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCC-CChhHHHHHHHHHhccccchhhh
Q 009425 100 DGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGL-NDLEPLVQTCMTTLNSKMVNRCK 178 (535)
Q Consensus 100 DGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~-~~~~~l~~ia~tsl~sk~~~~~~ 178 (535)
|||||+|+|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++++.+. ++.+.|.++|+|++++|+.+++.
T Consensus 87 DGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~ 166 (517)
T cd03336 87 DGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDK 166 (517)
T ss_pred CChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhH
Confidence 99999999999999999999999999999999999999999999999998874322 24678999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCC
Q 009425 179 RRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258 (535)
Q Consensus 179 ~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~ 258 (535)
++|++++++|+..+.+ .++.+.|++++++|++++||++++|+++++++.+ .||+.++||||++++++|+++++++
T Consensus 167 ~~l~~l~~~A~~~v~~----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~~ 241 (517)
T cd03336 167 EHFAELAVDAVLRLKG----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIKI 241 (517)
T ss_pred HHHHHHHHHHHHHhhc----cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCcccccc
Confidence 9999999999999853 4577899999999999999999999999998765 4799999999999999999999987
Q ss_pred -cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 259 -KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 259 -~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
++++.+++++++..+.+.|++++++++++|++.|++++++++.|++.+++||.++||++++++++++|+|||++|||++
T Consensus 242 ~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~i 321 (517)
T cd03336 242 FGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEI 321 (517)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeC
Q 009425 338 VPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYG 417 (535)
Q Consensus 338 i~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpG 417 (535)
+++++++++..+|+|+.|++..+|+ ++|++|++|++++.|||+|||+|+.+++|.+|+++||++++++++++|++|||
T Consensus 322 i~~l~~~~~~~LG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpG 399 (517)
T cd03336 322 ASTFDHPELVKLGTCKLIEEIMIGE--DKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLG 399 (517)
T ss_pred ecccCCCCcccccccceEEEEEECC--eEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeC
Confidence 9999999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCccccc
Q 009425 418 GGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDM 497 (535)
Q Consensus 418 GG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~ 497 (535)
||++|++++..|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|. .++.++|+|+.+|++.||
T Consensus 400 GGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~-~~~~~~Gid~~~g~~~d~ 478 (517)
T cd03336 400 GGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHY-NGNTTAGLDMRKGTVGDM 478 (517)
T ss_pred CCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCceeeecCCCCccch
Confidence 9999999999999998888999999999999999999999999999999999999999997 457789999999999999
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 498 REQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 498 ~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
++.|||||+.+|+++|+.|+|+|++|||||++|+..
T Consensus 479 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 514 (517)
T cd03336 479 KELGITESFKVKRQVLLSASEAAEMILRVDDIIKCA 514 (517)
T ss_pred hhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcC
Confidence 999999999999999999999999999999999864
No 12
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.5e-104 Score=851.35 Aligned_cols=514 Identities=37% Similarity=0.549 Sum_probs=485.2
Q ss_pred CceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC-----CCCeEEcCChHHHhcccccccHHH
Q 009425 10 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP-----DGDVTITNDGATILEQMDVDNQIA 84 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~-----~g~~~iTnDG~tIl~~l~~~hP~~ 84 (535)
.|..+++++. +...|.+++..|+.||..++++|+|||||+||+|||+++ .|+++|||||+||+++|+++||++
T Consensus 6 ~~~~~~~~~~--~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~a 83 (533)
T PTZ00212 6 VPPQVLKQGA--QEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAA 83 (533)
T ss_pred cchHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHH
Confidence 3444555543 467889999999999999999999999999999999998 599999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCC-CChhHHHH
Q 009425 85 KLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGL-NDLEPLVQ 163 (535)
Q Consensus 85 ~ll~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~-~~~~~l~~ 163 (535)
+|++++|++|++++||||||+|+|+++||+++.+|+++|+||..|++||++|++.++++|+++++++..+. .+.+.|.+
T Consensus 84 kll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~ 163 (533)
T PTZ00212 84 KILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLN 163 (533)
T ss_pred HHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998875321 12578999
Q ss_pred HHHHHhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccce
Q 009425 164 TCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAK 243 (535)
Q Consensus 164 ia~tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~k 243 (535)
+|+|++++|+.+.+.+.|++++++|+..+.+ .++.+.|++++++|++++||++++|+++++++.+ .||++++|||
T Consensus 164 va~t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~k 238 (533)
T PTZ00212 164 IARTTLSSKLLTVEKDHFAKLAVDAVLRLKG----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCK 238 (533)
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHHhc----cCCccceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCc
Confidence 9999999999999999999999999998853 3577889999999999999999999999999866 5799999999
Q ss_pred EEEEecCCCCCCCCC-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecC
Q 009425 244 IAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVG 322 (535)
Q Consensus 244 I~ll~~~l~~~~~~~-~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~ 322 (535)
|++++++|++++++. ++++.+++++++..+.+.|++++++.++.|++.|+++++++++|++.++++|.++||+++++++
T Consensus 239 Ill~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~ 318 (533)
T PTZ00212 239 ILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHAD 318 (533)
T ss_pred EEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCC
Confidence 999999999999987 7888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHH
Q 009425 323 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDAL 402 (535)
Q Consensus 323 ~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal 402 (535)
+++++|||++|||+++++++++++..+|+|+.|++..+|+ ++|++|++|..++.|||+|||+|+.+++|+||+++|||
T Consensus 319 ~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl 396 (533)
T PTZ00212 319 FDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGE--DKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDAL 396 (533)
T ss_pred HHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECC--eEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 89999999998999999999999999999999999999
Q ss_pred HHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009425 403 CVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENN 482 (535)
Q Consensus 403 ~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~ 482 (535)
+++++++++|++||||||+|++++.+|+++++...+++++++++|++||+.||++|++|||+|+.+++.+|+..|. +++
T Consensus 397 ~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~-~~~ 475 (533)
T PTZ00212 397 CVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHY-KGN 475 (533)
T ss_pred HHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccC
Confidence 9999999999999999999999999999998888999999999999999999999999999999999999999997 456
Q ss_pred CcEeeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 483 PNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 483 ~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...
T Consensus 476 ~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 526 (533)
T PTZ00212 476 KTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCA 526 (533)
T ss_pred CccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcC
Confidence 789999999999999999999999999999999999999999999999764
No 13
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-104 Score=850.40 Aligned_cols=505 Identities=41% Similarity=0.665 Sum_probs=482.4
Q ss_pred hhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCc
Q 009425 23 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGT 102 (535)
Q Consensus 23 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 102 (535)
+..+.+++.+|+.||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 3 KEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHHH
Q 009425 103 TGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLA 182 (535)
Q Consensus 103 tt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~la 182 (535)
||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++.++++ .+.+.|.++|+|+++||+.+++.++|+
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~--~~~~~l~~va~ts~~sK~~~~~~~~ls 160 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDL--NDRESLIKSATTSLNSKVVSQYSSLLA 160 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHHhccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999999988753 367789999999999999999999999
Q ss_pred HHHHHHHHHhhhhh-cCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCC-CCcccccceEEEEecCCCCCCCCCcc
Q 009425 183 EIAVKAVLAVADLE-RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQ-MPKRIENAKIAILTCPFEPPKPKTKH 260 (535)
Q Consensus 183 ~l~~~a~~~~~~~~-~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~-~~~~~~~~kI~ll~~~l~~~~~~~~~ 260 (535)
+++++|+.++++.. ...+|.++|+|.+..|++++||++++|++|++++.+++ ||+.++|+|+++++|||++++++...
T Consensus 161 ~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~ 240 (515)
T cd03338 161 PIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDN 240 (515)
T ss_pred HHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCc
Confidence 99999999998643 24678899999999999999999999999999999986 49999999999999999999999988
Q ss_pred eEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCC-----CHHHHHHHHhCCCcEEeecChhHHHHHHHHhCC
Q 009425 261 KVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGG 335 (535)
Q Consensus 261 ~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa 335 (535)
.+.++++++++.+.++|+++++++++++++.|++||+++++| ++.++++|.++||.+++++++++|+|||++|||
T Consensus 241 ~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa 320 (515)
T cd03338 241 NIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGC 320 (515)
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCC
Confidence 998999999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeE
Q 009425 336 RIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSI 414 (535)
Q Consensus 336 ~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~-~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~v 414 (535)
+++++++++++..+|+|+.|+++++|+ ++|+++++|.+ ++.|||+|||+|+.+++|++|+++||++++++++++|++
T Consensus 321 ~ii~sl~~l~~~~LG~~~~v~~~~~g~--~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~v 398 (515)
T cd03338 321 KPVASIDHFTEDKLGSADLVEEVSLGD--GKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRAL 398 (515)
T ss_pred EEecccccCCHhhCCCCceEEEEEECC--eEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999999999985 78999999987 689999999999999999999999999999999999999
Q ss_pred EeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcc
Q 009425 415 VYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGT 494 (535)
Q Consensus 415 vpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i 494 (535)
|||||++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|. +++.++|+|+.+|++
T Consensus 399 vpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~-~~~~~~G~d~~~g~~ 477 (515)
T cd03338 399 IPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHA-QGEKNAGINVRKGAI 477 (515)
T ss_pred EECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCCccceeccCCCc
Confidence 9999999999999999998888899999999999999999999999999999999999999997 456789999999999
Q ss_pred cccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 009425 495 NDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISP 532 (535)
Q Consensus 495 ~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~ 532 (535)
.||++.|||||+.+|+++|+.|+++|++|||||++|++
T Consensus 478 ~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 478 TNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 99999999999999999999999999999999999874
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-103 Score=843.71 Aligned_cols=506 Identities=33% Similarity=0.536 Sum_probs=483.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
+...|.+++.+|+.||.+++++|++||||+|++|||+++.| ++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 12 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~GDG 90 (522)
T TIGR02345 12 DTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDG 90 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCC-CChhHHHHHHHHHhccccchhhhhH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGL-NDLEPLVQTCMTTLNSKMVNRCKRR 180 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~-~~~~~l~~ia~tsl~sk~~~~~~~~ 180 (535)
|||+|+|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++++... .+.+.+.++|+|+++||+.++++++
T Consensus 91 TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ 170 (522)
T TIGR02345 91 TTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEF 170 (522)
T ss_pred chhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHH
Confidence 999999999999999999999999999999999999999999999998875321 2457899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCC---CcccccceEEEEecCCCCCCCC
Q 009425 181 LAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQM---PKRIENAKIAILTCPFEPPKPK 257 (535)
Q Consensus 181 la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~---~~~~~~~kI~ll~~~l~~~~~~ 257 (535)
|++++++|+..+++. .+|.++|+|.++.|++++||++++|++|++++.+|+| |+.++||+|++++++|++++.+
T Consensus 171 l~~l~~~A~~~v~~~---~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~ 247 (522)
T TIGR02345 171 FSKMIVDAVLQLDID---DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEK 247 (522)
T ss_pred HHHHHHHHHHHHhhc---cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCccc
Confidence 999999999999742 4678899999999999999999999999999998765 8899999999999999999998
Q ss_pred CcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 258 TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 258 ~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
.+..+.++++++++.+.+.|++++..+++++.+.|+++|+++++|++.+++||.+++|+++++++++++++++++|||++
T Consensus 248 ~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~i 327 (522)
T TIGR02345 248 DNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSI 327 (522)
T ss_pred cceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeC
Q 009425 338 VPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYG 417 (535)
Q Consensus 338 i~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpG 417 (535)
++++++++++.+|+|+.|+++.+++ ++|.+|++|+++++|||+|||+|+.+++|++|+++||+++++++++++++|||
T Consensus 328 i~~~~~l~~~~LG~~~~ie~~~~~~--~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpG 405 (522)
T TIGR02345 328 QSTTSDLEADVLGTCALFEERQIGS--ERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAG 405 (522)
T ss_pred EcchhhCChhhccCCceEEEEEECC--eEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeC
Confidence 9999999999999999999999986 89999999988899999999999999999999999999999999999889999
Q ss_pred CChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCccccc
Q 009425 418 GGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDM 497 (535)
Q Consensus 418 GG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~ 497 (535)
||++|++++.+|++++....+++++++++|++||+.||++|++|||+|+.+++.+|+..|. .++.++|||+.+|++.||
T Consensus 406 GG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~-~~~~~~G~d~~~~~i~d~ 484 (522)
T TIGR02345 406 GGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHA-KGGKWYGVDINTEDIGDN 484 (522)
T ss_pred CCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCCccceeCCCCcccch
Confidence 9999999999999988888899999999999999999999999999999999999999887 456689999999999999
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 009425 498 REQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 534 (535)
Q Consensus 498 ~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~ 534 (535)
++.|||||+.||+++|+.|+|+|++|||||++|++.+
T Consensus 485 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 521 (522)
T TIGR02345 485 FENFVWEPLLVKKNALKAAFEAACTILSIDETIMNPK 521 (522)
T ss_pred hhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCCC
Confidence 9999999999999999999999999999999998765
No 15
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-103 Score=844.44 Aligned_cols=509 Identities=35% Similarity=0.513 Sum_probs=480.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
++..|.+++..|++||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhh-hccccCCCCChhHHHHHHHHHhccccchhhhhH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERI-AQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRR 180 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~-~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 180 (535)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|++. +++++. .+.+.+.++|+|+++||+.+.+.+.
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~--~~~~~l~~va~tsl~sK~~~~~~~~ 163 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDE--LGREALINVAKTSMSSKIIGLDSDF 163 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCc--ccHHHHHHHHHHHhccccchhhHHH
Confidence 9999999999999999999999999999999999999999999874 777652 3677899999999999999999999
Q ss_pred HHHHHHHHHHHhhhh--h-cCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCC
Q 009425 181 LAEIAVKAVLAVADL--E-RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK 257 (535)
Q Consensus 181 la~l~~~a~~~~~~~--~-~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~ 257 (535)
|++++++|+..++.. . ...++.++|++.+..|++++||++++|++|++++.++.||+.++||||++++++|++++++
T Consensus 164 ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~ 243 (536)
T TIGR02340 164 FSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMA 243 (536)
T ss_pred HHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCccc
Confidence 999999999998632 1 2246888999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 258 TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 258 ~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
...++.++++.+++.+.+.|++++.+.+++|++.+++||+++++|++.+++||.+++|++++++++++|+|||++|||++
T Consensus 244 ~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~i 323 (536)
T TIGR02340 244 LGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTL 323 (536)
T ss_pred CceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC------CCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 009425 338 VPRFQEL------TPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRN 411 (535)
Q Consensus 338 i~~~~~l------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~ 411 (535)
+++++++ ++..+|+|+.|+++++|. ++|++|++|++++.|||+|||+|+.+++|++|+++||++++++++++
T Consensus 324 i~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~--~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~ 401 (536)
T TIGR02340 324 VSTLADLEGEETFDASYLGFADEVVEERIAD--DECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLES 401 (536)
T ss_pred ecchhhcCccccccccccccCceEEEEEECC--eEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9998554 445699999999999986 88999999998899999999999999999999999999999999999
Q ss_pred CeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-------CCc
Q 009425 412 NSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIREN-------NPN 484 (535)
Q Consensus 412 g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~-------~~~ 484 (535)
|++|||||++|++++.+|+++++...+++++++++|++||+.||++|++|||+|+.+++.+|+..|.+.. +.+
T Consensus 402 ~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~ 481 (536)
T TIGR02340 402 NSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKW 481 (536)
T ss_pred CCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCce
Confidence 9999999999999999999988888899999999999999999999999999999999999999997542 457
Q ss_pred EeeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 009425 485 CGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 534 (535)
Q Consensus 485 ~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~ 534 (535)
+|||+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.+..
T Consensus 482 ~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~ 531 (536)
T TIGR02340 482 YGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNP 531 (536)
T ss_pred EeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999997653
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-102 Score=833.60 Aligned_cols=504 Identities=34% Similarity=0.532 Sum_probs=478.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCC--CCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPD--GDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIG 99 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~--g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 99 (535)
+..+|.+++.+|+.|+.+++++++|||||+||+|||+++. |+++|||||+||+++|+++||+++|++++|++|++++|
T Consensus 8 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~G 87 (519)
T TIGR02341 8 QEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVG 87 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhC
Confidence 4567889999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCC-CChhHHHHHHHHHhccccchhhh
Q 009425 100 DGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGL-NDLEPLVQTCMTTLNSKMVNRCK 178 (535)
Q Consensus 100 DGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~-~~~~~l~~ia~tsl~sk~~~~~~ 178 (535)
|||||+|+|+++||+++.+|+++|+||..|++||+.|++.+++.|+++++++..+. .+.+.|.++++|++++|+.+.+.
T Consensus 88 DGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~ 167 (519)
T TIGR02341 88 DGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHK 167 (519)
T ss_pred CchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999998875322 14578999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCC
Q 009425 179 RRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258 (535)
Q Consensus 179 ~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~ 258 (535)
+.|++++++|+..+.+ ..+.+.|++.++.|+++++|++++|+++++.+.+ .||+.++||+|++++++|++++++.
T Consensus 168 ~~~s~l~~~av~~i~~----~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~~ 242 (519)
T TIGR02341 168 DHFAQLAVDAVLRLKG----SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVKV 242 (519)
T ss_pred HHHHHHHHHHHHHhcc----CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCcccc
Confidence 9999999999998843 2356779999999999999999999999999765 5789999999999999999999887
Q ss_pred -cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 259 -KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 259 -~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
++++.+++++++..+.+.|++++.++++.|++.|++++++++.|++.++++|.+++|++++++++.+|+|||++|||++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~i 322 (519)
T TIGR02341 243 FGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEI 322 (519)
T ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeC
Q 009425 338 VPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYG 417 (535)
Q Consensus 338 i~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpG 417 (535)
+++++++++..+|+|+.|++..+|+ ++|++|++|++++.|||+|||+|+.+++|++|+++||+++++++++++++|||
T Consensus 323 i~~~~~~~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpG 400 (519)
T TIGR02341 323 VSTFDHPELVKLGSCDLIEEIMIGE--DKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLG 400 (519)
T ss_pred ecccccCCccccccCceEEEEEECC--EEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeC
Confidence 9999999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCccccc
Q 009425 418 GGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDM 497 (535)
Q Consensus 418 GG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~ 497 (535)
|||+|++++..|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|. .++.++|+|+.+|++.||
T Consensus 401 GGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~-~~~~~~Gid~~~g~i~d~ 479 (519)
T TIGR02341 401 GGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHY-NGNHTMGLDMEEGEIADM 479 (519)
T ss_pred CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCCccceecCCCcccch
Confidence 9999999999999998888999999999999999999999999999999999999999997 456689999999999999
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 498 REQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 498 ~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
++.|||||+.||+++|+.|+|+|++|||||++|++.
T Consensus 480 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 515 (519)
T TIGR02341 480 RKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAA 515 (519)
T ss_pred hhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence 999999999999999999999999999999999764
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.3e-102 Score=832.00 Aligned_cols=504 Identities=31% Similarity=0.529 Sum_probs=476.5
Q ss_pred hhccH-HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 23 RLRGL-DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 23 ~~~g~-~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
..+|. +++.+|+.||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 12 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDG 91 (531)
T TIGR02346 12 HMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDG 91 (531)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCC
Confidence 44565 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhc-cccCCCCChhHHHHHHHHHhccccchhhhhH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQ-KFEFGLNDLEPLVQTCMTTLNSKMVNRCKRR 180 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~-~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 180 (535)
|||+|+|+++||+++.+++++|+||..|++||+.|++.+++.|+++++ ++. +..+.+.+.++++|+++||+.+. .++
T Consensus 92 TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~-~~~~~~~l~~i~~tsl~sK~~~~-~~~ 169 (531)
T TIGR02346 92 TNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVE-DVRNKKELIKALKASISSKQYGN-EDF 169 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC-CCCCHHHHHHHHHHHhccccCch-HHH
Confidence 999999999999999999999999999999999999999999999885 654 22367789999999999999988 899
Q ss_pred HHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcc
Q 009425 181 LAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKH 260 (535)
Q Consensus 181 la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~ 260 (535)
|++++++|+..+++...+.++.+.|+|+++.|++++||++++|++|++++. .+|+.++|+||+++++|+++++++...
T Consensus 170 ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~~~ 247 (531)
T TIGR02346 170 LAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTETKG 247 (531)
T ss_pred HHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccCce
Confidence 999999999999854434678889999999999999999999999999954 468999999999999999999999889
Q ss_pred eEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeeccC
Q 009425 261 KVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPR 340 (535)
Q Consensus 261 ~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~ 340 (535)
++.++++.++..+.+.|+++++++++++++.|++||+++++|+|.++++|.++||.++++++..+|+|||.+|||+++++
T Consensus 248 ~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~ 327 (531)
T TIGR02346 248 TVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLAR 327 (531)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeeeEEEEEecCccceEEEEEecC-CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCC
Q 009425 341 FQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCA-NSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGG 419 (535)
Q Consensus 341 ~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG 419 (535)
+++++++++|+|+.|++.++|+ ++|.+|+++. .++.+||+|||+|+.+++|++|+++||++++++++++|++|||||
T Consensus 328 l~~~~~~~LG~a~~v~~~~ig~--~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG 405 (531)
T TIGR02346 328 LGAPQPEEIGYVDSVYVSEIGG--QKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAG 405 (531)
T ss_pred cccCCHhHccccceEEEEEECC--EEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcC
Confidence 9999999999999999999986 7899999887 578999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCc--cccc
Q 009425 420 AAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVG--TNDM 497 (535)
Q Consensus 420 ~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~--i~d~ 497 (535)
|+|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|. .++.++|+|+.+|. +.||
T Consensus 406 ~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~-~~~~~~Gid~~~~~~~i~d~ 484 (531)
T TIGR02346 406 ATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHK-KGNTSSGIDIEAESDGVKDA 484 (531)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCCccceeeeCCCccccCh
Confidence 99999999999998888899999999999999999999999999999999999999987 45668999999999 5999
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 498 REQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 498 ~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
++.|||||+.||+++|+.|+|+|++|||||++|...
T Consensus 485 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (531)
T TIGR02346 485 SEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAK 520 (531)
T ss_pred hhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccC
Confidence 999999999999999999999999999999999754
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-102 Score=826.51 Aligned_cols=478 Identities=33% Similarity=0.507 Sum_probs=454.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDG 85 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDG 85 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRL 181 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 181 (535)
|||+++|+++||+++.+++++|+||..|++||++|++.+++.|++++.+++.+ .+.+.+.++|+|++++|+.+.+.+.|
T Consensus 86 TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~~~~~l~~va~ts~~sk~~~~~~~~l 164 (484)
T cd03342 86 TTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEID-TDRELLLSVARTSLRTKLHADLADQL 164 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCHHHHHHHHHHHhCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999887532 36788999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcce
Q 009425 182 AEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHK 261 (535)
Q Consensus 182 a~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~~ 261 (535)
++++++|+..+++.. ..+|.++|+|+++.||+++||++++|++|++++.+++||++++||+|++++++|++++++...+
T Consensus 165 ~~l~~~A~~~v~~~~-~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~ 243 (484)
T cd03342 165 TEIVVDAVLAIYKPD-EPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSG 243 (484)
T ss_pred HHHHHHHHHHHhhcC-CccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcE
Confidence 999999999997532 3678899999999999999999999999999999999999999999999999999998877655
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeeccCC
Q 009425 262 VDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRF 341 (535)
Q Consensus 262 v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~ 341 (535)
+.+ +|||++++|+|.++++|.++||++++++++++|+|||++|||++++++
T Consensus 244 ~~~-----------------------------~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l 294 (484)
T cd03342 244 FFY-----------------------------SVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSV 294 (484)
T ss_pred EEE-----------------------------EEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEeccc
Confidence 443 299999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChH
Q 009425 342 QELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAA 421 (535)
Q Consensus 342 ~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~ 421 (535)
+++++..+|+|+.++++.+|+ ++|++|++|++++.+||+|||+|+.+++|+||+++||++++++++++|++||||||+
T Consensus 295 ~~~~~~~LG~~~~v~~~~ig~--~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~ 372 (484)
T cd03342 295 DDLSPECLGYAGLVYERTLGE--EKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAF 372 (484)
T ss_pred ccCChhhCcccceEEEEEECC--eEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHH
Confidence 999999999999999999986 789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCC
Q 009425 422 EIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQN 501 (535)
Q Consensus 422 e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~g 501 (535)
|++++.+|+++++..++++|+++++|++||+.||++|++|||+|+.+++.+|+..|. .++.++|+|+.+|++.||++.|
T Consensus 373 e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~-~~~~~~Gid~~~g~~~d~~~~g 451 (484)
T cd03342 373 EVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYA-EGGQVGGVDLDTGEPMDPESEG 451 (484)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-ccCCceeeeCCCCcccchhhcC
Confidence 999999999998888999999999999999999999999999999999999998887 4466899999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 502 VFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 502 I~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
||||+.+|+++|+.|+|+|++|||||++|++.
T Consensus 452 I~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 452 IWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred cEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999999999999999999999999865
No 19
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-103 Score=747.38 Aligned_cols=505 Identities=40% Similarity=0.654 Sum_probs=483.6
Q ss_pred hccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCch
Q 009425 24 LRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTT 103 (535)
Q Consensus 24 ~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGtt 103 (535)
....+.|.+||.|++++++.++|||||+||||||+++.|+++|||||+|||+.|++-||+++||++++..||.++|||||
T Consensus 22 ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTT 101 (534)
T KOG0358|consen 22 EKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTT 101 (534)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCce
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHHHH
Q 009425 104 GVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAE 183 (535)
Q Consensus 104 t~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~la~ 183 (535)
|+|+|+++||+.+..|+++|+||+.|.+.|+.|.+..+++|.+++.|++. ++++.|.+.+.||||||+.++++..+++
T Consensus 102 sVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~vel--sdre~Li~~atTsLnSKvvSq~s~llap 179 (534)
T KOG0358|consen 102 SVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVEL--SDRESLIKSATTSLNSKVVSQYSSLLAP 179 (534)
T ss_pred EEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCccc--CcHHHHHHHHHhHhhHHHHHhhccccch
Confidence 99999999999999999999999999999999999999999999998875 5888999999999999999999999999
Q ss_pred HHHHHHHHhhhh-hcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcceE
Q 009425 184 IAVKAVLAVADL-ERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKV 262 (535)
Q Consensus 184 l~~~a~~~~~~~-~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~~v 262 (535)
+.++|+.++.++ +..+.|+.+|+|.|..||.++|+++++|++|++......-|++++++||.++.|.+.+||+++...+
T Consensus 180 mAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~i 259 (534)
T KOG0358|consen 180 MAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQI 259 (534)
T ss_pred HHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccce
Confidence 999999998754 3557889999999999999999999999999998776667999999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCC-----CHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 263 DIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 263 ~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
.++++.+++++.++|++|+..++++|++.|+|++++|++| +|.+++||.+-+|+|++.+.++++|.+|+.+|+.+
T Consensus 260 iv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~P 339 (534)
T KOG0358|consen 260 IVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKP 339 (534)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCee
Confidence 9999999999999999999999999999999999999976 89999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEe
Q 009425 338 VPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVY 416 (535)
Q Consensus 338 i~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~-~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvp 416 (535)
+.+++.+++..||+++.+++...++ ..+++.+.|+.+ +..+||++||++.-.++|.+|++|||||++|+..+.+.++|
T Consensus 340 ia~id~f~~d~Lg~adlveE~~~~G-~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~ 418 (534)
T KOG0358|consen 340 IADIDHFTADKLGSADLVEETDSSG-EGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIA 418 (534)
T ss_pred cchhhhcChhhcCcchhhhhcccCC-CccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceec
Confidence 9999999999999999999985544 258888888887 78899999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccc
Q 009425 417 GGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTND 496 (535)
Q Consensus 417 GGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d 496 (535)
|||+.|+.+|..|.++++...+.+.|++++||+|||.||.+|++|||++|+.++.+||+.|. +++...|++++.|.+.|
T Consensus 419 GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~ha-qge~~aGInVRkg~~tn 497 (534)
T KOG0358|consen 419 GGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHA-QGEKNAGINVRKGGITN 497 (534)
T ss_pred CCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHh-cCCcccceeeecccchh
Confidence 99999999999999999999999999999999999999999999999999999999999998 77899999999999999
Q ss_pred cccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 009425 497 MREQNVFETLIGKQQQILLATQVVKMILKIDDVISP 532 (535)
Q Consensus 497 ~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~ 532 (535)
|.++.|+.|+.|-.+++..|+|++.+||+||+|+.+
T Consensus 498 i~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 498 ILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred hHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999999999999999999875
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-100 Score=810.27 Aligned_cols=465 Identities=40% Similarity=0.633 Sum_probs=441.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
++..|.+++..|+.||.+++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 89 (480)
T cd03337 10 KRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (480)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRL 181 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 181 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++++. .+.+.+.++++|+++||+.++|.+.|
T Consensus 90 Ttt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~--~~~~~l~~i~~t~l~sK~~~~~~~~l 167 (480)
T cd03337 90 TTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDV--NDRAQMLKIIKSCIGTKFVSRWSDLM 167 (480)
T ss_pred cchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHhccCcchhHHHHH
Confidence 9999999999999999999999999999999999999999999999987753 36788999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh-cC--CCCcc-ceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCC
Q 009425 182 AEIAVKAVLAVADLE-RK--DVNLD-LIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK 257 (535)
Q Consensus 182 a~l~~~a~~~~~~~~-~~--~~~~~-~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~ 257 (535)
++++++|+..+++.. +. .+|.+ +|+|++++||+++||++++|++|++++.++.||+.++||||++++|+|++
T Consensus 168 s~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~---- 243 (480)
T cd03337 168 CNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY---- 243 (480)
T ss_pred HHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce----
Confidence 999999999997543 21 35554 59999999999999999999999999999999999999999999999886
Q ss_pred CcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 258 TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 258 ~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
||+++++|+|.++++|.++||++++++++++|+|||++|||++
T Consensus 244 -------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~i 286 (480)
T cd03337 244 -------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATI 286 (480)
T ss_pred -------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcee-eeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEe
Q 009425 338 VPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVY 416 (535)
Q Consensus 338 i~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvp 416 (535)
++++++++++.+|+ |+.++++.+++ +++++|++|++++.|||+|||+|+.+++|+||+++||+++++++++++++||
T Consensus 287 i~~~~~l~~~~LG~~~~~~~~~~~~~--~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vp 364 (480)
T cd03337 287 VNRPEELTESDVGTGAGLFEVKKIGD--EYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVP 364 (480)
T ss_pred ecchhhCCHHHcCCcccEEEEEEeCC--eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEe
Confidence 99999999999999 67778787775 7899999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccc
Q 009425 417 GGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTND 496 (535)
Q Consensus 417 GGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d 496 (535)
|||++||+++.+|+++++..++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.+.++.++|+|+.+|++.|
T Consensus 365 GGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d 444 (480)
T cd03337 365 GGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVD 444 (480)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCccc
Confidence 99999999999999998888999999999999999999999999999999999999999997433678999999999999
Q ss_pred cccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 009425 497 MREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531 (535)
Q Consensus 497 ~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~ 531 (535)
|++.|||||+.+|+++|++|+|+|++|||||++|.
T Consensus 445 ~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 445 MKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred chhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 99999999999999999999999999999999985
No 21
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.2e-97 Score=783.49 Aligned_cols=463 Identities=33% Similarity=0.532 Sum_probs=436.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCchh
Q 009425 25 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTG 104 (535)
Q Consensus 25 ~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt 104 (535)
.+.+++..|+.||.+|++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhcc-ccCCCCChhHHHHHHHHHhccccchhhhhHHHH
Q 009425 105 VVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQK-FEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAE 183 (535)
Q Consensus 105 ~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~-i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~la~ 183 (535)
+++|+++||+++.+++++|+||..|++||+.|++.++++|++++.+ +. +..+.+.+.++++|+++||..+ +.++|++
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~-~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~ 162 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIE-DLRNKEEVSKALKTAIASKQYG-NEDFLSP 162 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccC-CccCHHHHHHHHHHHhcccccc-hHHHHHH
Confidence 9999999999999999999999999999999999999999998865 32 2236778999999999999987 6899999
Q ss_pred HHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcceEE
Q 009425 184 IAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVD 263 (535)
Q Consensus 184 l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~~v~ 263 (535)
++++|+..+++.....++.++|+|++++|++.+||++++|++|++.+. .++++++||+|++++++|++
T Consensus 163 l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~---------- 230 (472)
T cd03341 163 LVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI---------- 230 (472)
T ss_pred HHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC----------
Confidence 999999999754334678889999999999999999999999988754 34588899999999999987
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeeccCCCC
Q 009425 264 IDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQE 343 (535)
Q Consensus 264 i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~ 343 (535)
|++||+++++|+|.++++|.++||++++++++++|+|||++|||++++++++
T Consensus 231 ----------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~ 282 (472)
T cd03341 231 ----------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGA 282 (472)
T ss_pred ----------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc
Confidence 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeEEEEEecCccceEEEEEecCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHh
Q 009425 344 LTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAE 422 (535)
Q Consensus 344 l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~-~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e 422 (535)
++++.+|+|+.|++.++|+ ++|++|++|.+ ++.+||+|||+|+.+++|+||+++||++++++++++|++|||||++|
T Consensus 283 l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e 360 (472)
T cd03341 283 PTPEEIGYCDSVYVEEIGD--TKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATE 360 (472)
T ss_pred CCHhHCCCceEEEEEEECC--eeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHH
Confidence 9999999999999999986 88999999987 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCC--cccccccC
Q 009425 423 IACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDV--GTNDMREQ 500 (535)
Q Consensus 423 ~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~--~i~d~~~~ 500 (535)
++++.+|++++....+++++++++|++||+.||++|++|||+|+.+++.+|+..|. +++.++|||+.+| ++.||++.
T Consensus 361 ~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~-~~~~~~Gid~~~g~~~~~d~~~~ 439 (472)
T cd03341 361 IELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQ-KGNKSAGVDIESGDEGTKDAKEA 439 (472)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCCeeeeeccCCCCCccChhhc
Confidence 99999999998778889999999999999999999999999999999999999887 4566899999999 99999999
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 009425 501 NVFETLIGKQQQILLATQVVKMILKIDDVISP 532 (535)
Q Consensus 501 gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~ 532 (535)
|||||+.||+++|+.|+|+|++|||||++|.+
T Consensus 440 gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 440 GIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred cceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 99999999999999999999999999999865
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.7e-97 Score=783.48 Aligned_cols=462 Identities=48% Similarity=0.724 Sum_probs=442.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCc
Q 009425 23 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGT 102 (535)
Q Consensus 23 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 102 (535)
..++.+++..|++||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHHH
Q 009425 103 TGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLA 182 (535)
Q Consensus 103 tt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~la 182 (535)
||+++|+++|++++.+++++|+||..|++||+.|++.+++.|++++++++ ..+.+.+.++++|+++||+.+.|+++|+
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~--~~~~~~l~~ia~tsl~sK~~~~~~~~l~ 160 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPID--VEDREELLKVATTSLNSKLVSGGDDFLG 160 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccC--CCCHHHHHHHhHhcccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999998853 2478899999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcceE
Q 009425 183 EIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKV 262 (535)
Q Consensus 183 ~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~~v 262 (535)
+++++|+..+++... .++.+.|+|++.+||+++||++++|++|++++.+++|++.++||||++++++|++
T Consensus 161 ~l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~--------- 230 (464)
T cd00309 161 ELVVDAVLKVGKENG-DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY--------- 230 (464)
T ss_pred HHHHHHHHHhccccC-ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce---------
Confidence 999999999975433 5677899999999999999999999999999999999999999999999999987
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeeccCCC
Q 009425 263 DIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQ 342 (535)
Q Consensus 263 ~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~ 342 (535)
||+++++|++.++++|.++||.+++++++++|+|||++|||+++++++
T Consensus 231 --------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~ 278 (464)
T cd00309 231 --------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLE 278 (464)
T ss_pred --------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccc
Confidence 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHh
Q 009425 343 ELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAE 422 (535)
Q Consensus 343 ~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e 422 (535)
++++..+|+|+.+++.++|+ ++|++|+++..++.|||+|||+|+.+++|+||+++||++++++++++|++|||||++|
T Consensus 279 ~~~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E 356 (464)
T cd00309 279 DLTPEDLGTAGLVEETKIGD--EKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAE 356 (464)
T ss_pred cCCcccCccccEEEEEEEcC--eeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHH
Confidence 99999999999999999986 7899999998889999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCc
Q 009425 423 IACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNV 502 (535)
Q Consensus 423 ~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI 502 (535)
++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|. ++..++|+|..+|++.||++.||
T Consensus 357 ~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~-~~~~~~g~d~~~~~~~d~~~~gI 435 (464)
T cd00309 357 IELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHA-EGGGNAGGDVETGEIVDMKEAGI 435 (464)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-ccCCCeeEECCCCcEeehhhccC
Confidence 99999999998888999999999999999999999999999999999999999887 44668999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 009425 503 FETLIGKQQQILLATQVVKMILKIDDVIS 531 (535)
Q Consensus 503 ~dp~~vk~~~l~~A~~~a~~lL~iD~iI~ 531 (535)
|||+.+|+++|+.|+|+|++|||||++|+
T Consensus 436 ~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 436 IDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred eecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 99999999999999999999999999985
No 23
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-96 Score=768.95 Aligned_cols=500 Identities=37% Similarity=0.529 Sum_probs=469.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
+..+|.++|..|+.|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++||+++|||
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDG 84 (524)
T COG0459 5 ERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDG 84 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCc
Confidence 56789999999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRL 181 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 181 (535)
|||++||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++..+ +.+. +++.|++++|..+++ ++|
T Consensus 85 TTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~--~~~~--~~~~t~v~sk~~~~~-~~i 159 (524)
T COG0459 85 TTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDS--EEEL--KIAITSVASKSANSD-EEI 159 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcc--hhhh--hhhhheeeeeeccCh-HHH
Confidence 99999999999999999999999999999999999999999999999988732 2222 889999999999877 999
Q ss_pred HHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCC-CCCCC-cccccceEEEEecCCCCCCCCCc
Q 009425 182 AEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMS-HPQMP-KRIENAKIAILTCPFEPPKPKTK 259 (535)
Q Consensus 182 a~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~-~~~~~-~~~~~~kI~ll~~~l~~~~~~~~ 259 (535)
++++++|+.++++... |.+.|.+.+..|+..+|+++++|++|++++. ++.|| +.++||+|++++++|++.+++.+
T Consensus 160 ~~lv~~Av~~v~~~~~---d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~ 236 (524)
T COG0459 160 GELVVEAVEKVGKEQS---DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELP 236 (524)
T ss_pred HHHHHHHHHHhccccc---ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCc
Confidence 9999999999985432 6789999999999999999999999999554 55677 78999999999999999999999
Q ss_pred ceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEecCCCCHHHHHHHHhCCCcEEeecChhHH-HHHHHHhCCe
Q 009425 260 HKVDIDTVEKFQTLRQQEQ-KYFDDMVQKCKDVGAT-LVICQWGFDDEANHLLMHRNLPAVRWVGGVEL-ELIAIATGGR 336 (535)
Q Consensus 260 ~~v~i~s~~~l~~~~~~E~-~~l~~~v~~i~~~~~~-lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L-~~ia~~tGa~ 336 (535)
.++.++++.+|..|.++|+ +.+..+++++.+.+++ +++++++|+|.+++||.+.+|++++++.++++ ++|+++|||+
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~ 316 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAK 316 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCce
Confidence 9999999999999999999 9999999999999999 99999999999999999999999999999999 8999999999
Q ss_pred eccCCCCCCCCCcee--eeeEEEEEecCccceEEEEEecCC--CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 009425 337 IVPRFQELTPEKLGK--AGLVREKSFGTTQDRMLYIEHCAN--SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNN 412 (535)
Q Consensus 337 ii~~~~~l~~~~lG~--~~~v~~~~~g~~~~~~~~~~~~~~--~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g 412 (535)
+++.++++++..+|. |+.+++..+++ +.+.+|++|.. ++.|||+|||+|+.+++|.||+++|||+++++++++|
T Consensus 317 ~v~~~~d~t~~~~G~~~~~~ve~~~~~~--~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g 394 (524)
T COG0459 317 IVSVLKDLTTIVLGEGAAGLVEETKTGD--YDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEG 394 (524)
T ss_pred EEeecccCceeecCccccceEEEeeccc--hhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 99999998886 78889999885 7899999999999999999999999999999999999
Q ss_pred eEEeCCChHhHHHHHHHHHHhccCCC-hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCC
Q 009425 413 SIVYGGGAAEIACSIAVDAAADRYPG-VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCND 491 (535)
Q Consensus 413 ~vvpGGG~~e~~la~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~ 491 (535)
++|||||++|++++..|++++...++ ++|+++++|++||+.||++|++|||+|+.+++.+|++.|. ..++|+|+.+
T Consensus 395 ~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~---~~~~G~d~~~ 471 (524)
T COG0459 395 KIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA---TTNYGIDAFT 471 (524)
T ss_pred CeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc---CCccceeccC
Confidence 99999999999999999988545555 9999999999999999999999999999999999998663 4569999999
Q ss_pred Ccc-cccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 009425 492 VGT-NDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 534 (535)
Q Consensus 492 ~~i-~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~ 534 (535)
|++ .||++.|||||+.||+++|++|+++|.+|||+|++|.+..
T Consensus 472 ~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~ 515 (524)
T COG0459 472 GEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKP 515 (524)
T ss_pred CccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999 7799999999999999999999999999999999998754
No 24
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-96 Score=697.08 Aligned_cols=514 Identities=35% Similarity=0.560 Sum_probs=484.5
Q ss_pred CceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCC--CCeEEcCChHHHhcccccccHHHHHH
Q 009425 10 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPD--GDVTITNDGATILEQMDVDNQIAKLM 87 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~--g~~~iTnDG~tIl~~l~~~hP~~~ll 87 (535)
.|..+++++. ...+|.++|.+.|.++..+.++|+|||||+||+||++... |.+.+||||+|||+++.+++|+||+|
T Consensus 2 ~p~~i~~~~~--~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvL 79 (527)
T KOG0363|consen 2 NPVQIFKDGA--TEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVL 79 (527)
T ss_pred Chhhhhcccc--hhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhhe
Confidence 3555666654 4568999999999999999999999999999999999753 77999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCC-CCChhHHHHHHH
Q 009425 88 VELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFG-LNDLEPLVQTCM 166 (535)
Q Consensus 88 ~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~-~~~~~~l~~ia~ 166 (535)
++.++.||.++||||||+++|+.+||+++.+|+.+.+||+.|+.||+.|.+.+.+.|.+.++.-..+ ...++.|.++++
T Consensus 80 v~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iar 159 (527)
T KOG0363|consen 80 VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIAR 159 (527)
T ss_pred eccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877553321 134678999999
Q ss_pred HHhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEE
Q 009425 167 TTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAI 246 (535)
Q Consensus 167 tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~l 246 (535)
|.|+||+++++.++|++++++|+.++.-. -|++.|+|+|..||+++||++-+|+++++.+-. +.|++++|+||++
T Consensus 160 TTL~SKiLsq~kehFaelavdAV~rLkGs----~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iLI 234 (527)
T KOG0363|consen 160 TTLSSKILSQDKEHFAELAVDAVLRLKGS----TNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILI 234 (527)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCC----CCccceeeehhcCCccccccccccceeccccCC-CCcccccccceEE
Confidence 99999999999999999999999998632 278899999999999999999999999998764 5689999999999
Q ss_pred EecCCCCCCCCC-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhH
Q 009425 247 LTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVE 325 (535)
Q Consensus 247 l~~~l~~~~~~~-~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~ 325 (535)
-|.+++..+.+. .+.+.+++...+.++...|++.++..+++|.+.|+|+.+...=|.++..++|...||+++...+.+-
T Consensus 235 ANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdG 314 (527)
T KOG0363|consen 235 ANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDG 314 (527)
T ss_pred ecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchh
Confidence 999999998887 4788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 009425 326 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVA 405 (535)
Q Consensus 326 L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~ 405 (535)
+||++.+||+.++|.||+++...+|+|+.+++..+|+ ++++.|.||..+..|||+|||+|++.+||.+|++|||||++
T Consensus 315 iERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe--d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVL 392 (527)
T KOG0363|consen 315 IERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE--DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVL 392 (527)
T ss_pred HHHHhhcccceeeeccCCcchhccccchhhHHHhcCc--cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred HHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcE
Q 009425 406 RNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNC 485 (535)
Q Consensus 406 ~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~ 485 (535)
....++.+++.||||.||..|..+.+++.+.++++..++++|++||..+|.+|+.|+|+|+.+++++||+.|. ++...+
T Consensus 393 aqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~-~g~~t~ 471 (527)
T KOG0363|consen 393 AQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHY-NGRTTM 471 (527)
T ss_pred HHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhh-cCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 788999
Q ss_pred eeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 009425 486 GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 (535)
Q Consensus 486 Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~ 533 (535)
|+|+.+|.+.||.+.||+|++.+|.+++..|.|+|.+|||+|.||.+.
T Consensus 472 Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~a 519 (527)
T KOG0363|consen 472 GLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAA 519 (527)
T ss_pred ccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcC
Confidence 999999999999999999999999999999999999999999999764
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.2e-93 Score=765.60 Aligned_cols=483 Identities=40% Similarity=0.640 Sum_probs=459.8
Q ss_pred HHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCchhHHHHHHHHHHHHHHH
Q 009425 40 VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKL 119 (535)
Q Consensus 40 l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~l 119 (535)
|+++|++||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHHHHHHHHHHHHhhhhhcCC
Q 009425 120 LERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKD 199 (535)
Q Consensus 120 i~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~ 199 (535)
+++|+||..|++||+.+++.+++.|++++++++.+ .+.++++++|++++|+.++|.+.|++++++|+..+.+ +
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~---~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~----~ 153 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINND---DESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS----N 153 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTST---SHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT----T
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhcccccc---chhhhhhhcccccccccccchhhhhhhHHHHHHhhcc----c
Confidence 99999999999999999999999999999887632 2899999999999999999999999999999944431 1
Q ss_pred CCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHH
Q 009425 200 VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQK 279 (535)
Q Consensus 200 ~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~ 279 (535)
++.+.+.++++.|++.+||++++|++|++++.++.||+++++|||++++++|++++. .+.++.++++++++.+.++|++
T Consensus 154 ~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 232 (485)
T PF00118_consen 154 FDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKK 232 (485)
T ss_dssp HHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHH
T ss_pred ccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhh
Confidence 466789999999999999999999999999999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEE
Q 009425 280 YFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKS 359 (535)
Q Consensus 280 ~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ 359 (535)
+++++++++.+.|++||+++++|++.++++|.++||.+++++++++|++|+++|||++++++++++++.+|+|+.++++.
T Consensus 233 ~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~ 312 (485)
T PF00118_consen 233 YLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEERE 312 (485)
T ss_dssp HHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEE
T ss_pred hhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ecCccceEEEEE--ecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCC
Q 009425 360 FGTTQDRMLYIE--HCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYP 437 (535)
Q Consensus 360 ~g~~~~~~~~~~--~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~ 437 (535)
+++ ++|++|+ +|..++.+||+|||+++.+++|++++++||+++++++++++++|||||++|++|+++|++++.+.+
T Consensus 313 i~~--~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~ 390 (485)
T PF00118_consen 313 IGN--KKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLS 390 (485)
T ss_dssp ETS--SEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSS
T ss_pred ccc--ccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhccc
Confidence 987 8999998 588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHH
Q 009425 438 GVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLAT 517 (535)
Q Consensus 438 ~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 517 (535)
+++++++++|++||+.||++|++|||+|+.+++++|+..|. ++.++|+|..+|++.||.+.|||||+.+|+++|+.|+
T Consensus 391 ~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~--~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~ 468 (485)
T PF00118_consen 391 GKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHN--NGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAV 468 (485)
T ss_dssp SHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHH--STTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhc--cccccCcCccCCceeccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999885 4459999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcCCC
Q 009425 518 QVVKMILKIDDVISPSE 534 (535)
Q Consensus 518 ~~a~~lL~iD~iI~~~~ 534 (535)
|+|++|||||++|.+++
T Consensus 469 ~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 469 EIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999998753
No 26
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.8e-92 Score=750.20 Aligned_cols=460 Identities=26% Similarity=0.377 Sum_probs=427.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccH----HHHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQ----IAKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 97 (535)
+..+|.+++..|++|+..++++|+|||||+|++|||+++.|+++|||||+||+|+|+++|| +++|++++|++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4678999999999999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++|.|++++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~----~~~~l~~va~ts~~~------ 153 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE----DKEEIAQVATISANG------ 153 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHhcccc------
Confidence 9999999999999999999999999999999999999999999999999998875 677899999998763
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCC-------CcccccceEEEEecC
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQM-------PKRIENAKIAILTCP 250 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~-------~~~~~~~kI~ll~~~ 250 (535)
++.+++++++|+..+++. +.|.|.+..| ...++++++|++|++++.+|+| ++.++||+|+++++.
T Consensus 154 ~~~ls~lv~~Av~~v~~~-------g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~ 225 (542)
T PRK00013 154 DEEIGKLIAEAMEKVGKE-------GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKK 225 (542)
T ss_pred hHHHHHHHHHHHHHhCcC-------CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCc
Confidence 689999999999988631 3488888776 7789999999999999999976 788899999999985
Q ss_pred CCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCC------CcEEeecC--
Q 009425 251 FEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRN------LPAVRWVG-- 322 (535)
Q Consensus 251 l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~------I~~i~~v~-- 322 (535)
+++++++ .++++++.+.|++|||++++|++.++++|..++ |+++++++
T Consensus 226 -------------i~~~~~l-----------~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~ 281 (542)
T PRK00013 226 -------------ISNIQDL-----------LPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFG 281 (542)
T ss_pred -------------cCCHHHH-----------HHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcc
Confidence 3455665 478999999999999999999999999999997 88999876
Q ss_pred ---hhHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCc-----------------
Q 009425 323 ---GVELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSR----------------- 377 (535)
Q Consensus 323 ---~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~----------------- 377 (535)
+++|+|||.+|||++++ ++++++++.||+|+.+++.. +++++|++|.+++
T Consensus 282 ~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~ 356 (542)
T PRK00013 282 DRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK-----DNTTIVDGAGDKEAIKARVAQIKAQIEETT 356 (542)
T ss_pred cchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec-----CEEEEEeCCCCHHHHHHHHHHHHHHHhhcC
Confidence 88999999999999999 79999999999999999862 7889999887654
Q ss_pred ------------------eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCCh
Q 009425 378 ------------------AVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGV 439 (535)
Q Consensus 378 ------------------~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~ 439 (535)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++ ...+++
T Consensus 357 ~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~ 434 (542)
T PRK00013 357 SDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGD 434 (542)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChH
Confidence 78999999999999999999999999999999998 9999999999999999988 677889
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHHH
Q 009425 440 EQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQV 519 (535)
Q Consensus 440 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~ 519 (535)
+|+++++|++||+.||++|++|||+|+.+++.+|+..| +.++|+|+.+|++.||++.|||||+.||.++|+.|+++
T Consensus 435 ~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~----~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~ 510 (542)
T PRK00013 435 EATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK----GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASV 510 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc----CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876 45799999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCC
Q 009425 520 VKMILKIDDVISPSE 534 (535)
Q Consensus 520 a~~lL~iD~iI~~~~ 534 (535)
|++||+||++|....
T Consensus 511 a~~iL~id~iI~~~~ 525 (542)
T PRK00013 511 AGLLLTTEAVVADKP 525 (542)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998653
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1e-91 Score=748.23 Aligned_cols=458 Identities=24% Similarity=0.355 Sum_probs=421.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccH----HHHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQ----IAKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 97 (535)
...+|.+++..|++|+.+++++|+|||||+|++|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 4 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 83 (542)
T PRK12849 4 IIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDV 83 (542)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCc
Confidence 4578999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|++++++++ +.+.+.++|+|+++.
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~----~~~~l~~va~ts~~~------ 153 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS----GSEEIAQVATISANG------ 153 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcCC------
Confidence 9999999999999999999999999999999999999999999999999998875 677899999998763
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCccc-ceeEeEEEEeccCCCCCC-------CcccccceEEEEec
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLED-TELIYGITVDKDMSHPQM-------PKRIENAKIAILTC 249 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~d-s~li~Giv~~~~~~~~~~-------~~~~~~~kI~ll~~ 249 (535)
+++|++++++|+..+++. +.+.+. .|++.+| +++++|++|++++.+++| ++.++||+|+++++
T Consensus 154 ~~~l~~lv~~Av~~v~~~-------g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~ 224 (542)
T PRK12849 154 DEEIGELIAEAMEKVGKD-------GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDK 224 (542)
T ss_pred hHHHHHHHHHHHHHhccC-------CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecC
Confidence 689999999999998632 234454 6888776 799999999999999865 78889999999998
Q ss_pred CCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhC------CCcEEeecC-
Q 009425 250 PFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHR------NLPAVRWVG- 322 (535)
Q Consensus 250 ~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~------~I~~i~~v~- 322 (535)
.+ ++++++ .++++++.+.+++|||++++|+|.|+++|..+ +|+++++++
T Consensus 225 ~i-------------~~~~~~-----------~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~ 280 (542)
T PRK12849 225 KI-------------SSLQDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGF 280 (542)
T ss_pred Cc-------------CCHHHH-----------HHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCc
Confidence 53 455554 46789999999999999999999999999999 899999877
Q ss_pred ----hhHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCC-----------------
Q 009425 323 ----GVELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS----------------- 376 (535)
Q Consensus 323 ----~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~----------------- 376 (535)
+++|+|||.+|||++++ +++++++++||+|+.|++.. ++++++++|.++
T Consensus 281 ~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~-----~~~~~i~g~~~~~~i~~r~~~l~~~~~~~ 355 (542)
T PRK12849 281 GDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK-----DNTTIVDGAGDKEAIEARVAQIRRQIEET 355 (542)
T ss_pred cchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee-----eeEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 56699999999999999 68899989999999999752 788888888764
Q ss_pred ------------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCC
Q 009425 377 ------------------RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438 (535)
Q Consensus 377 ------------------~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~ 438 (535)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++ ..++
T Consensus 356 ~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g 433 (542)
T PRK12849 356 TSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNG 433 (542)
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCCh
Confidence 489999999999999999999999999999999998 99999999999999999998 8889
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHH
Q 009425 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQ 518 (535)
Q Consensus 439 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~ 518 (535)
++|+++++|++||+.||++|++|||+|+.+++.+|++.| +++|+|+.+|++.||++.|||||+.+|.++|+.|++
T Consensus 434 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e 508 (542)
T PRK12849 434 DQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAAS 508 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753 479999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCC
Q 009425 519 VVKMILKIDDVISPSE 534 (535)
Q Consensus 519 ~a~~lL~iD~iI~~~~ 534 (535)
+|++||+||++|+..+
T Consensus 509 ~A~~iL~id~iI~~~~ 524 (542)
T PRK12849 509 VAGLLLTTEALVADKP 524 (542)
T ss_pred HHHHHHhHHHHHhcCC
Confidence 9999999999997654
No 28
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=7.4e-91 Score=745.54 Aligned_cols=460 Identities=21% Similarity=0.331 Sum_probs=423.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccH----HHHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQ----IAKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 97 (535)
+..+|.+++..|++|+..++++|+|||||+|++|||+++.|+++|||||+||+++++++|| +++|++++|++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 4677899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+|+||++||+++.+++++|+||..|++||+.|.+.+++.|++++++++ +.+.+.++|+|++++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~----~~~~l~~va~ts~~~------ 165 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK----TKEDILNVATISANG------ 165 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHHcCC------
Confidence 9999999999999999999999999999999999999999999999999998875 677899999999876
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccc-eeEeEEEEeccCCCCCC-------CcccccceEEEEec
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDT-ELIYGITVDKDMSHPQM-------PKRIENAKIAILTC 249 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds-~li~Giv~~~~~~~~~~-------~~~~~~~kI~ll~~ 249 (535)
++.+++++++|+..+++. +. |.+..|+++.|| ++++|++|++++.+|+| ++.+++|+|+++++
T Consensus 166 ~~~l~~li~eAv~~vg~~-------g~--I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~ 236 (555)
T PTZ00114 166 DVEIGSLIADAMDKVGKD-------GT--ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDK 236 (555)
T ss_pred hHHHHHHHHHHHHHhCcC-------Cc--EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcC
Confidence 578999999999998631 22 556689999998 79999999999999976 77889999999999
Q ss_pred CCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCC------CcEEee---
Q 009425 250 PFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRN------LPAVRW--- 320 (535)
Q Consensus 250 ~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~------I~~i~~--- 320 (535)
+|+ ++++ +.++++++.+.++||+|++++|++.|+++|..|+ |.++++
T Consensus 237 ~L~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~ 292 (555)
T PTZ00114 237 KIS-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGF 292 (555)
T ss_pred CCC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCC
Confidence 986 2333 4688999999999999999999999999999997 888876
Q ss_pred --cChhHHHHHHHHhCCeeccCC------CCCCCCCceeeeeEEEEEecCccceEEEEEecC------------------
Q 009425 321 --VGGVELELIAIATGGRIVPRF------QELTPEKLGKAGLVREKSFGTTQDRMLYIEHCA------------------ 374 (535)
Q Consensus 321 --v~~~~L~~ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------------ 374 (535)
+++++|+|||.+|||+++++. +++++++||+|+.|++.. +++++++++.
T Consensus 293 g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~-----~~~~~~~~~~~~~~i~~r~~~l~~~~~~ 367 (555)
T PTZ00114 293 GDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK-----DETVILTGGGDKAEIKERVELLRSQIER 367 (555)
T ss_pred CcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe-----ceEEEEeCCCcHHHHHHHHHHHHHHHHh
Confidence 678999999999999999997 778888999999999875 4566666655
Q ss_pred -----------------CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhc--c
Q 009425 375 -----------------NSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAAD--R 435 (535)
Q Consensus 375 -----------------~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~--~ 435 (535)
+++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|++++. .
T Consensus 368 ~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~ 446 (555)
T PTZ00114 368 TTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNE 446 (555)
T ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccC
Confidence 56899999999999999999999999999999999998 999999999999999999875 5
Q ss_pred CCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHH
Q 009425 436 YPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILL 515 (535)
Q Consensus 436 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~ 515 (535)
.++++|+++++|++||+.||++|++|||+|+.+++.+|++ .+++++|||+.+|++.||++.|||||+.||.++|+.
T Consensus 447 ~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~----~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~ 522 (555)
T PTZ00114 447 LTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE----KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVD 522 (555)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh----cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHH
Confidence 7789999999999999999999999999999999999975 356789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCC
Q 009425 516 ATQVVKMILKIDDVISPSE 534 (535)
Q Consensus 516 A~~~a~~lL~iD~iI~~~~ 534 (535)
|+++|++||+||++|+...
T Consensus 523 A~~~A~~iL~id~iI~~~~ 541 (555)
T PTZ00114 523 AASVASLMLTTEAAIVDLP 541 (555)
T ss_pred HHHHHHHHHhHHHHHHhCC
Confidence 9999999999999998754
No 29
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.4e-90 Score=737.93 Aligned_cols=454 Identities=25% Similarity=0.375 Sum_probs=421.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccH----HHHHHHHHHHhhhhhc
Q 009425 23 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQ----IAKLMVELSRSQDYEI 98 (535)
Q Consensus 23 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 98 (535)
..+|.+++..|++|+..++++++|||||+|++|||+++.|+++|||||+||+++++++|| +++|+++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 467899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhh
Q 009425 99 GDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCK 178 (535)
Q Consensus 99 GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~ 178 (535)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++ +.+.+.++|+|++++ +
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~----~~~~l~~va~ts~~~------~ 152 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK----TKEEIAQVATISANG------D 152 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcCC------h
Confidence 999999999999999999999999999999999999999999999999998875 678899999999987 6
Q ss_pred hHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCccc-ceeEeEEEEeccCCCCCC---C----cccccceEEEEecC
Q 009425 179 RRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLED-TELIYGITVDKDMSHPQM---P----KRIENAKIAILTCP 250 (535)
Q Consensus 179 ~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~d-s~li~Giv~~~~~~~~~~---~----~~~~~~kI~ll~~~ 250 (535)
+++++++++|+..+++. +.|.+ ..|++.+| +++++|++|++++.+|+| | +.++||+|++++++
T Consensus 153 ~~l~~lv~~A~~~v~~~-------~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~ 223 (520)
T cd03344 153 EEIGELIAEAMEKVGKD-------GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKK 223 (520)
T ss_pred HHHHHHHHHHHHHhccC-------CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCC
Confidence 89999999999988631 23555 47888888 799999999999999886 3 46789999999999
Q ss_pred CCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCC------cEEeec---
Q 009425 251 FEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL------PAVRWV--- 321 (535)
Q Consensus 251 l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I------~~i~~v--- 321 (535)
+ ++++++ .++++++.+.|++|||++++|++.++++|..+|| .+++++
T Consensus 224 l-------------~~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~ 279 (520)
T cd03344 224 I-------------SSIQEL-----------LPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFG 279 (520)
T ss_pred C-------------CCHHHH-----------HHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCC
Confidence 5 444554 5678999999999999999999999999999999 787755
Q ss_pred --ChhHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCC------------------
Q 009425 322 --GGVELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS------------------ 376 (535)
Q Consensus 322 --~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~------------------ 376 (535)
++++|+|||++|||++++ +++++++++||+|+.+++.+ ++++++++|.++
T Consensus 280 ~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~ 354 (520)
T cd03344 280 DRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK-----DDTTIIGGAGDKAAIKARIAQIRKQIEETT 354 (520)
T ss_pred cccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee-----ceEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999 78888888999999999864 678888888664
Q ss_pred -----------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCCh
Q 009425 377 -----------------RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGV 439 (535)
Q Consensus 377 -----------------~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~ 439 (535)
+.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++. .+++
T Consensus 355 ~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~ 432 (520)
T cd03344 355 SDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGD 432 (520)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChH
Confidence 599999999999999999999999999999999998 999999999999999999987 8899
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHHH
Q 009425 440 EQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQV 519 (535)
Q Consensus 440 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~ 519 (535)
+|+++++|++||+.||++|++|||+|+.+++++|++.|. ++|+|+.+|++.||++.|||||+.+|.++|+.|+++
T Consensus 433 ~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~ 507 (520)
T cd03344 433 EKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASV 507 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987652 799999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhc
Q 009425 520 VKMILKIDDVIS 531 (535)
Q Consensus 520 a~~lL~iD~iI~ 531 (535)
|++||++|.+|.
T Consensus 508 a~~iL~id~~i~ 519 (520)
T cd03344 508 ASLLLTTEALVV 519 (520)
T ss_pred HHHHHhhheEEe
Confidence 999999999886
No 30
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.5e-90 Score=737.28 Aligned_cols=458 Identities=22% Similarity=0.343 Sum_probs=421.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccH----HHHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQ----IAKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 97 (535)
+..+|.+++..|++|++.++++|+|||||+|++|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 3567889999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++++ +.+.+.++++++++ +
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~----~~~~l~~va~~s~~------~ 154 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT----TNAEIAQVATISAN------G 154 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcc------C
Confidence 9999999999999999999999999999999999999999999999999998875 56778999988874 3
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCC-------CCcccccceEEEEecC
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQ-------MPKRIENAKIAILTCP 250 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~-------~~~~~~~~kI~ll~~~ 250 (535)
++.|++++++|+..+++. +.+.|.+.. +...++++++|++|++++.+|+ |++.++||+|++++++
T Consensus 155 ~~~l~~lv~~Av~~vg~~-------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~ 226 (541)
T PRK12851 155 DAEIGRLVAEAMEKVGNE-------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKK 226 (541)
T ss_pred hHHHHHHHHHHHHHhccc-------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCC
Confidence 689999999999998631 345676655 4668899999999999999986 8888999999999998
Q ss_pred CCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCC------cEEee----
Q 009425 251 FEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL------PAVRW---- 320 (535)
Q Consensus 251 l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I------~~i~~---- 320 (535)
++ +.++ +.++++.+.+.+++|||++++|++.++++|..+|| +++++
T Consensus 227 i~-------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~ 282 (541)
T PRK12851 227 IS-------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFG 282 (541)
T ss_pred cC-------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccc
Confidence 43 2222 56889999999999999999999999999999997 67775
Q ss_pred -cChhHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCC------------------
Q 009425 321 -VGGVELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS------------------ 376 (535)
Q Consensus 321 -v~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~------------------ 376 (535)
+++++|+|||.+|||++++ ++++++++.||+|+.|++.+ ++++++++|.++
T Consensus 283 ~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~ 357 (541)
T PRK12851 283 DRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK-----ENTTIIDGAGSKTEIEGRVAQIRAQIEETT 357 (541)
T ss_pred cccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc-----ceEEEEcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999 68888888999999999863 688889888764
Q ss_pred -----------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCCh
Q 009425 377 -----------------RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGV 439 (535)
Q Consensus 377 -----------------~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~ 439 (535)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|++++.. +++
T Consensus 358 ~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~ 435 (541)
T PRK12851 358 SDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGD 435 (541)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcH
Confidence 278999999999999999999999999999999998 9999999999999999998876 889
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHHH
Q 009425 440 EQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQV 519 (535)
Q Consensus 440 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~ 519 (535)
+++++++|++||+.||++|++|||+|+.+++.+|++.| .++|+|+.+|+++||++.|||||+.+|.++|+.|+++
T Consensus 436 ~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~ 510 (541)
T PRK12851 436 QRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASV 510 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754 3799999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCC
Q 009425 520 VKMILKIDDVISPS 533 (535)
Q Consensus 520 a~~lL~iD~iI~~~ 533 (535)
|++||+||++|...
T Consensus 511 A~~iL~id~iI~~~ 524 (541)
T PRK12851 511 AGLLLTTEAMVAEK 524 (541)
T ss_pred HHHHHhHHHhhhcC
Confidence 99999999999765
No 31
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4.7e-90 Score=735.50 Aligned_cols=459 Identities=25% Similarity=0.361 Sum_probs=419.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccH----HHHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQ----IAKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 97 (535)
+..+|.+++..|++|+.+++++|+|||||+|++|||+++.|+++|||||+||+++|++.|| +++|++++|++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 4567899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++ +.+.+.++++|++++
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~----~~~~l~~va~ts~~~------ 152 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK----GKKEIAQVATISANN------ 152 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhccC------
Confidence 9999999999999999999999999999999999999999999999999998875 677899999998764
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCc-ccceeEeEEEEeccCCCCCC-------CcccccceEEEEec
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRL-EDTELIYGITVDKDMSHPQM-------PKRIENAKIAILTC 249 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~-~ds~li~Giv~~~~~~~~~~-------~~~~~~~kI~ll~~ 249 (535)
++++++++++|+..+++. +.|.|.. |+.. +++++++|++|++++.+++| ++.++||+|+++++
T Consensus 153 ~~~l~~lv~~A~~~v~~~-------~~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~ 223 (524)
T TIGR02348 153 DEEIGSLIAEAMEKVGKD-------GVITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDK 223 (524)
T ss_pred hHHHHHHHHHHHHHhCcC-------CcEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccC
Confidence 689999999999998632 2355553 5555 66999999999999999976 77889999999998
Q ss_pred CCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhC------CCcEEeecCh
Q 009425 250 PFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHR------NLPAVRWVGG 323 (535)
Q Consensus 250 ~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~------~I~~i~~v~~ 323 (535)
.+ ++++++ .++++.+.+.|+||||++++|++.|+++|..+ +|+++++++.
T Consensus 224 ~i-------------~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~ 279 (524)
T TIGR02348 224 KI-------------SNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGF 279 (524)
T ss_pred Cc-------------CCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCc
Confidence 63 345554 68899999999999999999999999999987 7889987754
Q ss_pred -----hHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCc----------------
Q 009425 324 -----VELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSR---------------- 377 (535)
Q Consensus 324 -----~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~---------------- 377 (535)
++|+|||.+|||++++ ++++++++.||+|+.+++.. +++++++++.+++
T Consensus 280 ~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-----~~~~~i~~~~~~~~~~~ri~~l~~~~~~~ 354 (524)
T TIGR02348 280 GDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK-----DNTTIVEGAGDKAAIKARVAQIKAQIEET 354 (524)
T ss_pred cchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee-----cEEEEEcCCCCHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999 89999999999999999863 6788888876543
Q ss_pred -------------------eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCC
Q 009425 378 -------------------AVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438 (535)
Q Consensus 378 -------------------~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~ 438 (535)
.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|++++.+|++ +...++
T Consensus 355 ~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~ 432 (524)
T TIGR02348 355 TSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNE 432 (524)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCCh
Confidence 68999999999999999999999999999999998 999999999999999998 677888
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHH
Q 009425 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQ 518 (535)
Q Consensus 439 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~ 518 (535)
++++++++|++||+.||++|++|||+|+.+++.+|++. .+ ++|||+.+|++.||++.|||||+.||.++|+.|++
T Consensus 433 ~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~---~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~ 507 (524)
T TIGR02348 433 DEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES---KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAAS 507 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc---CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999763 22 49999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCCC
Q 009425 519 VVKMILKIDDVISPSEY 535 (535)
Q Consensus 519 ~a~~lL~iD~iI~~~~~ 535 (535)
+|++||++|++|...+|
T Consensus 508 ~a~~iL~id~ii~~~~~ 524 (524)
T TIGR02348 508 IAGLLLTTEAVVADKPE 524 (524)
T ss_pred HHHHHHhHHHHhhcCCC
Confidence 99999999999987653
No 32
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-92 Score=685.20 Aligned_cols=520 Identities=35% Similarity=0.558 Sum_probs=493.0
Q ss_pred cCCceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHH
Q 009425 8 FGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLM 87 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll 87 (535)
|+.|..-+.... .+..|..++..|++|.+++++++++|+||+.|.||+.++.|.+..||||..|++++++.||+|+-+
T Consensus 1 m~apv~~~~~~~--~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksm 78 (527)
T KOG0364|consen 1 MQAPVLVLSKNT--KRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSM 78 (527)
T ss_pred CCCceeeccccc--CcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhH
Confidence 345544443322 467799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHH
Q 009425 88 VELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMT 167 (535)
Q Consensus 88 ~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~t 167 (535)
.+++.+||+++||||||+++|++++|.++..++++|+||+.++++|.+|++.+++.++..+.+++. ++...+.++..+
T Consensus 79 iel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~--~~~~km~~vi~~ 156 (527)
T KOG0364|consen 79 IELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDV--KDQAKMLRVINS 156 (527)
T ss_pred hhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCc--ccHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999998887765 367788999999
Q ss_pred HhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCcc-ceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEE
Q 009425 168 TLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLD-LIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAI 246 (535)
Q Consensus 168 sl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~-~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~l 246 (535)
+..+|+.++|++.++.+..+|+.+++...++.+|+. +.+++|++||.+.+|++++|+.+++.+.||.|.+.++||||+|
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivL 236 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVL 236 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEE
Confidence 999999999999999999999999986655567774 7999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHH
Q 009425 247 LTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVEL 326 (535)
Q Consensus 247 l~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L 326 (535)
|+|||+|.+.+.++.+.+...+++....+-|++++..+++.+....++||+++++++|.+++||.++||++++++++.|-
T Consensus 237 lD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn 316 (527)
T KOG0364|consen 237 LDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDN 316 (527)
T ss_pred ecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccCCCCCCCCCce-eeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 009425 327 ELIAIATGGRIVPRFQELTPEKLG-KAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVA 405 (535)
Q Consensus 327 ~~ia~~tGa~ii~~~~~l~~~~lG-~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~ 405 (535)
.|++++|||+++++.+++.+.+.| .|+.|+..++|+ ++|.||..|..++.|||++|||+...++|++|.++||+.+.
T Consensus 317 ~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gd--eyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~va 394 (527)
T KOG0364|consen 317 NRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGD--EYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVA 394 (527)
T ss_pred chhhhhcCceeccChhhCchhccCcccceeeeeccCc--hhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999 488999999997 89999999999999999999999999999999999999999
Q ss_pred HHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcE
Q 009425 406 RNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNC 485 (535)
Q Consensus 406 ~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~ 485 (535)
|+.+-+|+++||||++||.+|+.|++.+....+-++-.+.+.+.|||.+|++|++|+|.+++..+..++..|+ .+...|
T Consensus 395 rn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~-~G~~~~ 473 (527)
T KOG0364|consen 395 RNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHK-EGQRVW 473 (527)
T ss_pred HHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhc-Ccceee
Confidence 9999999999999999999999999988888899999999999999999999999999999999999999998 677889
Q ss_pred eeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 009425 486 GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 534 (535)
Q Consensus 486 Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~ 534 (535)
|+|..+|.++||.+.++|+|..+|.+..++|++.+++|||||+++...+
T Consensus 474 gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~k 522 (527)
T KOG0364|consen 474 GIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKK 522 (527)
T ss_pred cccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeee
Confidence 9999999999999999999999999999999999999999999987653
No 33
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8e-90 Score=734.98 Aligned_cols=457 Identities=22% Similarity=0.361 Sum_probs=418.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHH----HHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----~~ll~~~~~~~~~~ 97 (535)
...+|.+++..|++|+.+++++++|||||+|++|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 45678899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+++ +.+.|.+++++++++
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~----~~~~l~~va~~s~~~------ 154 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT----SSKEIAQVATISANG------ 154 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcCC------
Confidence 9999999999999999999999999999999999999999999999999998875 677899999999876
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEe--ccCCCcccceeEeEEEEeccCCCCCC-------CcccccceEEEEe
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEG--KVGGRLEDTELIYGITVDKDMSHPQM-------PKRIENAKIAILT 248 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~--~~G~~~~ds~li~Giv~~~~~~~~~~-------~~~~~~~kI~ll~ 248 (535)
++.|++++++|+..+++. +.|.+.. ..| .++++++|++|++++.+|+| ++.++||+|++++
T Consensus 155 ~~~l~~lv~eAv~~vg~~-------g~i~v~~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 224 (544)
T PRK12850 155 DESIGEMIAEAMDKVGKE-------GVITVEEAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHE 224 (544)
T ss_pred HHHHHHHHHHHHHHhccc-------CceeeEEccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEe
Confidence 589999999999998742 1233332 233 68899999999999999976 7888999999999
Q ss_pred cCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCC------cEEee--
Q 009425 249 CPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL------PAVRW-- 320 (535)
Q Consensus 249 ~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I------~~i~~-- 320 (535)
+.+ ++.++ +.++++++.+.|++|||++++|+|.++++|..|+| .++++
T Consensus 225 ~~i-------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~ 280 (544)
T PRK12850 225 KKI-------------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPG 280 (544)
T ss_pred ccc-------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCC
Confidence 954 23222 57889999999999999999999999999999999 88887
Q ss_pred ---cChhHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCC----------------
Q 009425 321 ---VGGVELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS---------------- 376 (535)
Q Consensus 321 ---v~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~---------------- 376 (535)
+++++|+|||++|||++++ ++++++++.||+|+.|++.. ++++++++|.++
T Consensus 281 ~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-----~~~~~i~g~~~~~~i~~ri~~l~~~~~~ 355 (544)
T PRK12850 281 FGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK-----ENTTIIDGAGDKKNIEARVKQIRAQIEE 355 (544)
T ss_pred cCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe-----eeEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999 68899988999999999863 678899988764
Q ss_pred -------------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCC
Q 009425 377 -------------------RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYP 437 (535)
Q Consensus 377 -------------------~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~ 437 (535)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ ...+
T Consensus 356 ~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~ 433 (544)
T PRK12850 356 TTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGAN 433 (544)
T ss_pred cccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCC
Confidence 389999999999999999999999999999999998 9999999999999999988 6778
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHH
Q 009425 438 GVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLAT 517 (535)
Q Consensus 438 ~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 517 (535)
+++|+++++|++||+.||++|++|||+|+.+++.+|++.| .++|+|+.+|++.||++.|||||+.||.++|+.|+
T Consensus 434 ~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (544)
T PRK12850 434 ADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAA 508 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998754 46899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcCCC
Q 009425 518 QVVKMILKIDDVISPSE 534 (535)
Q Consensus 518 ~~a~~lL~iD~iI~~~~ 534 (535)
++|++|||+|++|...+
T Consensus 509 ~~a~~iL~id~iI~~~~ 525 (544)
T PRK12850 509 SIAALLITTEAMVAEAP 525 (544)
T ss_pred HHHHHHHhHHHhhccCC
Confidence 99999999999998753
No 34
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-89 Score=733.85 Aligned_cols=459 Identities=22% Similarity=0.339 Sum_probs=419.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhccccc----ccHHHHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~----~hP~~~ll~~~~~~~~~~ 97 (535)
+..+|.+++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|++ +||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 4567889999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+++||++||+++.+|+++|+||..|++||++|++.+++.|++++++++ +.+.+.+++++++++
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~----~~~~l~~va~~s~~~------ 154 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA----SSAEIAQVGTISANG------ 154 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHhhhcCC------
Confidence 9999999999999999999999999999999999999999999999999998875 456699999998876
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCc-ccceeEeEEEEeccCCCCC-------CCcccccceEEEEec
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRL-EDTELIYGITVDKDMSHPQ-------MPKRIENAKIAILTC 249 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~-~ds~li~Giv~~~~~~~~~-------~~~~~~~~kI~ll~~ 249 (535)
++.|++++++|+..+++. +.|.+. .|+.. .++++++|+.|++++.+|+ |+..++||+|+++++
T Consensus 155 ~~~l~~li~eA~~~vg~~-------g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~ 225 (545)
T PRK12852 155 DAAIGKMIAQAMQKVGNE-------GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEK 225 (545)
T ss_pred hHHHHHHHHHHHHHhccC-------Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecC
Confidence 588999999999999732 235555 36665 6899999999999999986 777889999999876
Q ss_pred CCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhC------CCcEEeecC-
Q 009425 250 PFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHR------NLPAVRWVG- 322 (535)
Q Consensus 250 ~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~------~I~~i~~v~- 322 (535)
.+ ++++ ++.++++.+.+.++||||++++|++.|+++|..| +|+++++.+
T Consensus 226 ~i-------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~ 281 (545)
T PRK12852 226 KL-------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGF 281 (545)
T ss_pred cc-------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCc
Confidence 43 3333 3578899999999999999999999999999987 799998765
Q ss_pred ----hhHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCC------------------
Q 009425 323 ----GVELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN------------------ 375 (535)
Q Consensus 323 ----~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~------------------ 375 (535)
+++|+|||.+|||++++ ++++++++.||+|+.+++.+ +++++++++.+
T Consensus 282 ~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 356 (545)
T PRK12852 282 GDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK-----ENTTIVNGAGKKADIEARVGQIKAQIEET 356 (545)
T ss_pred ccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc-----cEEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999 68899989999999999874 57888888765
Q ss_pred -----------------CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCC
Q 009425 376 -----------------SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438 (535)
Q Consensus 376 -----------------~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~ 438 (535)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.. ++
T Consensus 357 ~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~ 434 (545)
T PRK12852 357 TSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NA 434 (545)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-Cc
Confidence 3789999999999999999999999999999999998 9999999999999999998866 78
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHH
Q 009425 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQ 518 (535)
Q Consensus 439 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~ 518 (535)
.+|+++++|++||+.||++|++|||+|+.+++++|++.| ++++|||+.+|+++||++.|||||+.+|.++|+.|++
T Consensus 435 ~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e 510 (545)
T PRK12852 435 DVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK----SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAAS 510 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc----CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998765 4689999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCC
Q 009425 519 VVKMILKIDDVISPSE 534 (535)
Q Consensus 519 ~a~~lL~iD~iI~~~~ 534 (535)
+|++||+||++|....
T Consensus 511 ~a~~iL~id~iI~~~~ 526 (545)
T PRK12852 511 VAGLLVTTEAMVAELP 526 (545)
T ss_pred HHHHHHhHHHHhhcCC
Confidence 9999999999997643
No 35
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-90 Score=676.29 Aligned_cols=505 Identities=34% Similarity=0.506 Sum_probs=476.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCC
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDG 101 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 101 (535)
++..|..+|..|..|+.+++++|++||||-|++||++++.|++++||||+|||+.+.++||++++|++.++.|++++|||
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDg 92 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDG 92 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHh-hhccccCCCCChhHHHHHHHHHhccccchhhhhH
Q 009425 102 TTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER-IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRR 180 (535)
Q Consensus 102 ttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~-~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 180 (535)
||++++++++||+++.+|+..++||+.+++||+.|+..+++++.+ +++++++ ...+.|.++++|+++||++....++
T Consensus 93 ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~--lg~~~Lin~~ktsmsSK~i~~ds~~ 170 (545)
T KOG0360|consen 93 TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDS--LGTQILINLAKTSMSSKIIGMDSDF 170 (545)
T ss_pred ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhh--cchHHHHHHHHhhhcceecccchHH
Confidence 999999999999999999999999999999999999999999976 5666553 4678899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh---cCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCC
Q 009425 181 LAEIAVKAVLAVADLE---RKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK 257 (535)
Q Consensus 181 la~l~~~a~~~~~~~~---~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~ 257 (535)
|++++++|+..+.-.. ...+..+.+.|.|-.|.+.-||.++.|+.+++..++..||..+.++||+++++.|...+..
T Consensus 171 f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~ 250 (545)
T KOG0360|consen 171 FTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMK 250 (545)
T ss_pred HHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccccccc
Confidence 9999999998875321 2235667899999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCee
Q 009425 258 TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRI 337 (535)
Q Consensus 258 ~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 337 (535)
+...+.+.+++.++++.+.|....++.+++|.+.|+|||+++++|||.+++||.++|++++||+++++|++|+++||+++
T Consensus 251 lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~ 330 (545)
T KOG0360|consen 251 LGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATL 330 (545)
T ss_pred ccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC------CCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 009425 338 VPRFQE------LTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRN 411 (535)
Q Consensus 338 i~~~~~------l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~ 411 (535)
++++.+ +.+..+|+|+.|.+.+|++ +.++++.+.+.. .++|+|||++++.+||++|++|||||+++..+++
T Consensus 331 ~sSla~l~geetf~~~~lG~a~evvqeri~d--de~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes 407 (545)
T KOG0360|consen 331 LSSLANLEGEETFEPASLGSADEVVQERIGD--DELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLES 407 (545)
T ss_pred eehhhccccccccChhhccchhHHHHHhccc--ceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhcc
Confidence 999874 5567899999999999997 889898886655 8999999999999999999999999999999999
Q ss_pred CeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-------CCc
Q 009425 412 NSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIREN-------NPN 484 (535)
Q Consensus 412 g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~-------~~~ 484 (535)
+++||||||+|.+|+-+|++++.+...++++++..|+.||..+|++|+.|++.|+.+.+.+++..|.... ..+
T Consensus 408 ~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~ 487 (545)
T KOG0360|consen 408 KSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQ 487 (545)
T ss_pred CccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999887532 257
Q ss_pred EeeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 009425 485 CGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531 (535)
Q Consensus 485 ~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~ 531 (535)
+|+|+.+|++.|.++.|+++|..+|...|+.|+|.+..+||||++|.
T Consensus 488 ~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~ 534 (545)
T KOG0360|consen 488 YGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIK 534 (545)
T ss_pred hCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhh
Confidence 99999999999999999999999999999999999999999999985
No 36
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=4e-88 Score=721.37 Aligned_cols=461 Identities=22% Similarity=0.312 Sum_probs=413.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHH----HHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIA----KLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~----~ll~~~~~~~~~~ 97 (535)
+..+|.++++..++||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++ +|+++++++|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 356788999999999999999999999999999999999999999999999999999999998 5888899999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+++|+++||+++.+|+++|+||..|++||++|.+.+++.|++++++++ +.+.|.++|+++++.
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~----d~~~L~~VA~ts~~~------ 153 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE----DIQAITQVASISAGN------ 153 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHhccC------
Confidence 9999999999999999999999999999999999999999999999999998875 677899999998884
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCC---Cc----ccccceEEEEecC
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQM---PK----RIENAKIAILTCP 250 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~---~~----~~~~~kI~ll~~~ 250 (535)
++.|++++++|+..+++. +.|.+.. .++..+++++++|++|+++|.+|+| ++ .++||+|++++++
T Consensus 154 ~~~l~~lv~eAv~~vg~~-------g~i~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~ 225 (529)
T CHL00093 154 DEEVGSMIADAIEKVGRE-------GVISLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKK 225 (529)
T ss_pred hHHHHHHHHHHHHHhccC-------CceeecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCC
Confidence 689999999999999731 2344431 2234567799999999999999987 44 3789999999999
Q ss_pred CCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHH--Hh----CCCcEEeecC--
Q 009425 251 FEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLL--MH----RNLPAVRWVG-- 322 (535)
Q Consensus 251 l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l--~~----~~I~~i~~v~-- 322 (535)
|++.+ ..+.++++.+.+.+++++|++++|++.++.+| ++ .+|+++++++
T Consensus 226 le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~ 282 (529)
T CHL00093 226 ITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFG 282 (529)
T ss_pred CCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCC
Confidence 98632 12568899999999999999999999888866 65 4899999884
Q ss_pred ---hhHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEEecCccceEEEEEe---------cCC----------
Q 009425 323 ---GVELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEH---------CAN---------- 375 (535)
Q Consensus 323 ---~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~---------~~~---------- 375 (535)
+++|+|||.+|||++++ +++++++..||+|+.+++.. ++++++++ |+.
T Consensus 283 ~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 357 (529)
T CHL00093 283 DRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK-----DSTTIIADGNEEQVKARCEQLRKQIEIADS 357 (529)
T ss_pred cchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec-----CEEEEEecCcHHHHHHHHHHHHHHhhhcCC
Confidence 58899999999999999 78999999999999999863 67788763 322
Q ss_pred ---------------CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhc-cCCCh
Q 009425 376 ---------------SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAAD-RYPGV 439 (535)
Q Consensus 376 ---------------~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~-~~~~~ 439 (535)
+..+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|++++. ..+++
T Consensus 358 ~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~ 436 (529)
T CHL00093 358 SYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKED 436 (529)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChH
Confidence 1478899999999999999999999999999999998 999999999999999999886 78899
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHHH
Q 009425 440 EQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQV 519 (535)
Q Consensus 440 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~ 519 (535)
+|+++++|++||+.||++|++|||+|+.+++.+++. .+.++|||+.+|+++||++.|||||+.||.++|+.|+++
T Consensus 437 ~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~-----~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~ 511 (529)
T CHL00093 437 ELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQE-----QDFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASI 511 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-----cCCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864 245899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCC
Q 009425 520 VKMILKIDDVISPSE 534 (535)
Q Consensus 520 a~~lL~iD~iI~~~~ 534 (535)
|++|||||++|...+
T Consensus 512 a~~iL~id~ii~~~~ 526 (529)
T CHL00093 512 ASMILTTECIIVDKK 526 (529)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999998754
No 37
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=3.4e-87 Score=714.18 Aligned_cols=458 Identities=21% Similarity=0.332 Sum_probs=415.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccc----cHHHHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~----hP~~~ll~~~~~~~~~~ 97 (535)
+..+|.+++..|++|+..++++|++||||+|++|||+++.|+++|||||+||+++|+++ ||+++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 45678999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
+||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +.+.+.++++++.+++
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~----~~~~l~~va~~s~~~d----- 155 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVT----SNDEIAQVGTISANGD----- 155 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHhcCc-----
Confidence 9999999999999999999999999999999999999999999999999998876 4467899999998874
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCc-ccceeEeEEEEeccCCCCCC-------CcccccceEEEEec
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRL-EDTELIYGITVDKDMSHPQM-------PKRIENAKIAILTC 249 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~-~ds~li~Giv~~~~~~~~~~-------~~~~~~~kI~ll~~ 249 (535)
+.+++++++|+..+++ .+.|.+.. ++.. +++++++|++|++++.+|+| +..+++|+|++++.
T Consensus 156 -~~i~~lv~~Av~~vg~-------~g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~ 225 (546)
T PRK14104 156 -AEIGKFLADAMKKVGN-------EGVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEK 225 (546)
T ss_pred -hHHHHHHHHHHHHhcc-------CCceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehh
Confidence 7799999999999873 13566654 3445 58999999999999999977 56677899988762
Q ss_pred CCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHh------CCCcEEeecC-
Q 009425 250 PFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMH------RNLPAVRWVG- 322 (535)
Q Consensus 250 ~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~------~~I~~i~~v~- 322 (535)
. ++++++ +.++++.+.+.++||||++++|++.|+++|.. .+|.++++++
T Consensus 226 ~-------------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~ 281 (546)
T PRK14104 226 K-------------LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGF 281 (546)
T ss_pred h-------------hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCC
Confidence 2 445544 46889999999999999999999999999985 4678887766
Q ss_pred ----hhHHHHHHHHhCCeeccC-----CCCCCCCCceeeeeEEEEEecCccceEEEEEecCCC-----------------
Q 009425 323 ----GVELELIAIATGGRIVPR-----FQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS----------------- 376 (535)
Q Consensus 323 ----~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~----------------- 376 (535)
+++|+|||.+|||+++++ ++++++..||+|+.+++ +. ++++++++|.++
T Consensus 282 g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~--~~~~~i~g~~~~~~i~~ri~~l~~~~~~~ 356 (546)
T PRK14104 282 GDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DK--ENTTIVNGAGKKADIEARVAQIKAQIEET 356 (546)
T ss_pred CcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cC--CEEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999 88999999999999986 33 788899988764
Q ss_pred ------------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCC
Q 009425 377 ------------------RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438 (535)
Q Consensus 377 ------------------~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~ 438 (535)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..++
T Consensus 357 ~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~ 434 (546)
T PRK14104 357 TSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKND 434 (546)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCCh
Confidence 899999999999999999999999999999999998 99999999999999999874 4578
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHH
Q 009425 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQ 518 (535)
Q Consensus 439 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~ 518 (535)
++++++++|++||+.||++|++|||+|+.+++.+|+..| ++++|+|+.+|++.||++.|||||+.||.++|++|++
T Consensus 435 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~ 510 (546)
T PRK14104 435 DQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE----QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAAS 510 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC----CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997642 4579999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCC
Q 009425 519 VVKMILKIDDVISPS 533 (535)
Q Consensus 519 ~a~~lL~iD~iI~~~ 533 (535)
+|++||+||++|...
T Consensus 511 ~a~~iL~id~~I~~~ 525 (546)
T PRK14104 511 VAALLITTEAMVAEL 525 (546)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999653
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-87 Score=661.69 Aligned_cols=519 Identities=30% Similarity=0.503 Sum_probs=472.4
Q ss_pred CcccccccCCceEEeecchhhhhhccH-HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhccccc
Q 009425 1 MALAFDEFGRPFILLRQQEEKSRLRGL-DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV 79 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~ 79 (535)
|+++.|++..| ..++++- ...+|. ++...|+.||+++++++||+|||+||+||++|+.|++++|||.+||+++|++
T Consensus 1 M~~~vp~a~~~-q~~k~g~--r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev 77 (537)
T KOG0362|consen 1 MALTVPKAGIP-QMLKEGA--RSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEV 77 (537)
T ss_pred CCccCCCCchh-hHHhccc--cCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhc
Confidence 77788877322 2334442 234454 6899999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChh
Q 009425 80 DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLE 159 (535)
Q Consensus 80 ~hP~~~ll~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~ 159 (535)
+||+++||+++++.|+++.||||+++|+|+++||++|.+|+..|++|..|++||+.|.+.+++.|+++...--.+..|.+
T Consensus 78 ~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~ 157 (537)
T KOG0362|consen 78 EHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE 157 (537)
T ss_pred cCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997543222223444
Q ss_pred HHHHHHHHHhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCccc
Q 009425 160 PLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRI 239 (535)
Q Consensus 160 ~l~~ia~tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~ 239 (535)
..++++..+|-... .+++++++++|+..+.+. . .|+.++|+|+|+.|++.++|+++.|++|++..... +++.
T Consensus 158 ---~~~rs~i~skq~~~-ed~l~~lVa~ac~si~p~-~-~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~--v~~a 229 (537)
T KOG0362|consen 158 ---WALRSVIMSKQYGN-EDFLTKLVAKACVSILPL-M-SFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGE--VKSA 229 (537)
T ss_pred ---HHHHHHHHHhhcch-HHHHHHHHHHHHHhhccc-c-cccccceEEEEEecCCcccceeeEEEEeccccCCc--cccc
Confidence 66777777776554 589999999999999876 2 38999999999999999999999999999987643 4666
Q ss_pred ccceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEe
Q 009425 240 ENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 319 (535)
Q Consensus 240 ~~~kI~ll~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~ 319 (535)
+.+||++++||++...++++.++.+++++++..|.+.|+..+...++.+...|+++|++.+.+++.+++||++.+|++++
T Consensus 230 k~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlq 309 (537)
T KOG0362|consen 230 KDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQ 309 (537)
T ss_pred ccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEE-ecCCCceEEEEEecCCHHHHHHHHHHH
Q 009425 320 WVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIE-HCANSRAVTIFIRGGNKMMIEETKRSI 398 (535)
Q Consensus 320 ~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~-~~~~~~~~TI~l~G~t~~~l~e~~~~l 398 (535)
-.++.||.|+|+..||++++++..+.+..+|+|+++....+|+ ..++.|. ++..++..|++|||++...+|+.||++
T Consensus 310 i~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~--~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAV 387 (537)
T KOG0362|consen 310 INSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGD--TLVVVFRWESTGTRVATVVLRGATQSILDDAERAV 387 (537)
T ss_pred eccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCC--ceEEEEeeccCCCceeEEEEcccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 6666665 444678899999999999999999999
Q ss_pred HHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009425 399 HDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQI 478 (535)
Q Consensus 399 ~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~ 478 (535)
+|++++.+...++++++||+|++|++|++.|.+++...++.+|++++.|++||+.+|++|++|+|++..+++++|...|.
T Consensus 388 ddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~ 467 (537)
T KOG0362|consen 388 DDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ 467 (537)
T ss_pred HHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCcEeeecCCC-cccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 009425 479 RENNPNCGIDCNDV-GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 534 (535)
Q Consensus 479 ~~~~~~~Gid~~~~-~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~ 534 (535)
+....|+|...+ ...|+.++||||-+..|.++++.|+++|.++|++|+||++.+
T Consensus 468 --~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~ 522 (537)
T KOG0362|consen 468 --GGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKK 522 (537)
T ss_pred --CCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecc
Confidence 445588888766 589999999999999999999999999999999999998754
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=7.7e-87 Score=714.73 Aligned_cols=464 Identities=23% Similarity=0.344 Sum_probs=415.3
Q ss_pred hhhccH--HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHH----HHHHHHHHHhhh
Q 009425 22 SRLRGL--DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQD 95 (535)
Q Consensus 22 ~~~~g~--~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----~~ll~~~~~~~~ 95 (535)
+..+|. ++|+..++|+..|+++|++||||+||+|||+++.|+++|||||+||+|+|++.||+ ++|++++|++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 456777 79999999999999999999999999999999999999999999999999999994 999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccch
Q 009425 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVN 175 (535)
Q Consensus 96 ~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~ 175 (535)
+++||||||++||+++||+++.++++.|+||..|++||++|.+.+++.|++++.+++ + +.|.++|++++++
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~----d-~~L~~vA~tS~~~---- 208 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE----D-SELADVAAVSAGN---- 208 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC----H-HHHHHHHHHhccC----
Confidence 999999999999999999999999999999999999999999999999999998774 3 5699999999986
Q ss_pred hhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccc-eeEeEEEEeccCCCC-------CCCcccccceEEEE
Q 009425 176 RCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDT-ELIYGITVDKDMSHP-------QMPKRIENAKIAIL 247 (535)
Q Consensus 176 ~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds-~li~Giv~~~~~~~~-------~~~~~~~~~kI~ll 247 (535)
++.|++++++|+.++++. +.|.++ .|++.+|+ ++++|++|+++|.+| .|++.++||+|+++
T Consensus 209 --~~~i~~liaeAv~~Vg~~-------g~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~ 277 (600)
T PLN03167 209 --NYEVGNMIAEAMSKVGRK-------GVVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLV 277 (600)
T ss_pred --cHHHHHHHHHHHHHhccC-------CcEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEE
Confidence 478999999999999731 234443 68888987 899999999999999 56778899999999
Q ss_pred ecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHH------hCCCcEEeec
Q 009425 248 TCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLM------HRNLPAVRWV 321 (535)
Q Consensus 248 ~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~------~~~I~~i~~v 321 (535)
++. +++++++ .++++.+.+.++++||++++|+++++++|. ..+|.+++++
T Consensus 278 d~~-------------i~~~~~l-----------~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p 333 (600)
T PLN03167 278 DKK-------------ITNARDL-----------IGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAP 333 (600)
T ss_pred ccc-------------cCCHHHH-----------HHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcc
Confidence 874 5666666 456678888999999999999999999999 6778999988
Q ss_pred C-----hhHHHHHHHHhCCeecc-----CCCCCCCCCceeeeeEEEEE-----ecCc------cceEEEEEecC------
Q 009425 322 G-----GVELELIAIATGGRIVP-----RFQELTPEKLGKAGLVREKS-----FGTT------QDRMLYIEHCA------ 374 (535)
Q Consensus 322 ~-----~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~-----~g~~------~~~~~~~~~~~------ 374 (535)
+ +++|+|||.+|||++++ ++++++++.||+|+.|++.+ +|+. .+++.+|+++.
T Consensus 334 ~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~ 413 (600)
T PLN03167 334 GFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQD 413 (600)
T ss_pred cCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCH
Confidence 5 88999999999999999 68888889999999999986 5541 13566666543
Q ss_pred ------------CCceEEEE-EecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHH
Q 009425 375 ------------NSRAVTIF-IRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQ 441 (535)
Q Consensus 375 ------------~~~~~TI~-l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~ 441 (535)
.++.+|++ |||+|+.+++|+||+++||++++++++++| +|||||++|++++..|++++...++++|
T Consensus 414 ~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq 492 (600)
T PLN03167 414 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQ 492 (600)
T ss_pred HHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhH
Confidence 02245665 999999999999999999999999999999 9999999999999999998877777777
Q ss_pred H-HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHHHH
Q 009425 442 Y-AIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVV 520 (535)
Q Consensus 442 ~-~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a 520 (535)
+ +++++++||+.||++|++|||+|+.+++.+|+. .++.++|||+.+|++.||++.|||||+.||+++|+.|+++|
T Consensus 493 ~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~----~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A 568 (600)
T PLN03167 493 KVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLS----NDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVA 568 (600)
T ss_pred HHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHh----cCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHH
Confidence 5 599999999999999999999999999999974 24668999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcCCC
Q 009425 521 KMILKIDDVISPSE 534 (535)
Q Consensus 521 ~~lL~iD~iI~~~~ 534 (535)
++||++|++|+..+
T Consensus 569 ~~iL~iD~iI~~~~ 582 (600)
T PLN03167 569 KTFLTSDCVVVEIK 582 (600)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999998653
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-82 Score=611.12 Aligned_cols=500 Identities=32% Similarity=0.494 Sum_probs=475.5
Q ss_pred hccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCch
Q 009425 24 LRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTT 103 (535)
Q Consensus 24 ~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGtt 103 (535)
.+...+..-|+.++..+.+++++.+||.|..||++++.|++.+|+||.+.+++|+++||.+-++..++..|++..|||||
T Consensus 13 ~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGtt 92 (520)
T KOG0359|consen 13 AQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTT 92 (520)
T ss_pred HhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcc
Confidence 44556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHHHH
Q 009425 104 GVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAE 183 (535)
Q Consensus 104 t~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~la~ 183 (535)
|+|+|.++++++|...+..|+||..|.+||+.|.+.++++|+..+.++ +++.|..+++|++++|....-.+.+++
T Consensus 93 S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~-----~~~~L~~va~tsl~Tkv~~~la~~lt~ 167 (520)
T KOG0359|consen 93 SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-----DRETLKDVARTSLRTKVHAELADVLTP 167 (520)
T ss_pred eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccch-----hHHHHHHHHHHhhcCcccHHHHhHhHH
Confidence 999999999999999999999999999999999999999999665554 578999999999999999988999999
Q ss_pred HHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcceEE
Q 009425 184 IAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVD 263 (535)
Q Consensus 184 l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~~v~ 263 (535)
++++|+..+. .....+|+.+++|.+....+..|+.+++|++++++..||.||++++|+.|++.|.+|||+|++.++.+.
T Consensus 168 ~vv~aVl~i~-~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~Einsgff 246 (520)
T KOG0359|consen 168 IVVDSVLCIR-RQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFF 246 (520)
T ss_pred HHHhhheeec-cCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchh
Confidence 9999999887 223457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHcCCc----EEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeecc
Q 009425 264 IDTVEKFQTLRQQEQKYFDDMVQKCKDVGAT----LVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVP 339 (535)
Q Consensus 264 i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~----lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~ 339 (535)
+++++|.+.+...|++++.+.+++|++.+.. +||.|++|||..++.|+++||+++||.++..|||+..+||+..+.
T Consensus 247 Ysta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~n 326 (520)
T KOG0359|consen 247 YSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVN 326 (520)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceec
Confidence 9999999999999999999999999987653 588999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCC
Q 009425 340 RFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGG 419 (535)
Q Consensus 340 ~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG 419 (535)
+++|++++.+|+|+.+++.++|+ ++|+|+++|.+++.|||+++||+.+.+.++|++++|+|++++++++++.++||+|
T Consensus 327 svddLtp~~LG~aglVye~tlGE--EkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gag 404 (520)
T KOG0359|consen 327 SVDDLTPDYLGYAGLVYEYTLGE--EKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAG 404 (520)
T ss_pred ccccCChhhccccceeEEeeccc--eeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCch
Confidence 99999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCccccccc
Q 009425 420 AAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMRE 499 (535)
Q Consensus 420 ~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~ 499 (535)
++|.+++.+|+...++.+++.++++++|++||..+|++|++|+|+|..+.+.+|...|... ..|+|+.+|+..+...
T Consensus 405 a~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~---~~g~dl~~g~~~~~~~ 481 (520)
T KOG0359|consen 405 AFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT---LRGLDLFRGEECDPSR 481 (520)
T ss_pred HHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh---hcccccccCCccchhh
Confidence 9999999999988888899999999999999999999999999999999999999887622 5699999999999999
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 009425 500 QNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 534 (535)
Q Consensus 500 ~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~ 534 (535)
.||||.+.||.++|..+.-+|+.||-+|+++.++.
T Consensus 482 ~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~ 516 (520)
T KOG0359|consen 482 KGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGM 516 (520)
T ss_pred ccccchHHHHHHHhhhhHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999998874
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-74 Score=543.87 Aligned_cols=398 Identities=74% Similarity=1.149 Sum_probs=381.4
Q ss_pred CcccccccCCceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccc
Q 009425 1 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD 80 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~ 80 (535)
|+..++.+.+|++++.+++.+.+..|.++.++|+-+.+++++++++|+||+|++|+++.+.|++.+|||| .
T Consensus 1 ~~~~~~~~~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d 71 (400)
T KOG0357|consen 1 MALAFDEFGRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------V 71 (400)
T ss_pred CchHhHhhcCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------c
Confidence 4556777899999998877778999999999999999999999999999999999999999999999999 7
Q ss_pred cHHHHHHHHHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhH
Q 009425 81 NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEP 160 (535)
Q Consensus 81 hP~~~ll~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~ 160 (535)
|++++++...+..|+.++|||||.+++|++++++++.+++.+|+||..|.+||..+.+.+++.|++.+.+++
T Consensus 72 ~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e-------- 143 (400)
T KOG0357|consen 72 HQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE-------- 143 (400)
T ss_pred hHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc--------
Confidence 899999999999999999999999999999999999999999999999999999999999888887664432
Q ss_pred HHHHHHHHhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccc
Q 009425 161 LVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIE 240 (535)
Q Consensus 161 l~~ia~tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~ 240 (535)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEee
Q 009425 241 NAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRW 320 (535)
Q Consensus 241 ~~kI~ll~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~ 320 (535)
+...++++++.|+++++|||++||+|.++|.+|+..++||
T Consensus 144 ----------------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrw 183 (400)
T KOG0357|consen 144 ----------------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRW 183 (400)
T ss_pred ----------------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceee
Confidence 2467899999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHH
Q 009425 321 VGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHD 400 (535)
Q Consensus 321 v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~d 400 (535)
|.-.++|-||..||++|+++|++++++.||+|+.|++..||+++++.++++.|++++.+||.+||++..+++|.||++||
T Consensus 184 VGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~Eakrslhd 263 (400)
T KOG0357|consen 184 VGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHD 263 (400)
T ss_pred cCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 009425 401 ALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRE 480 (535)
Q Consensus 401 al~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~ 480 (535)
|||++|+.+++.++|+|||++|+.||-.+.+.+.++++.+||++++|++||++||..|++|+|++|++.++++++.+...
T Consensus 264 alCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~ 343 (400)
T KOG0357|consen 264 ALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKE 343 (400)
T ss_pred hHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 009425 481 NNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535 (535)
Q Consensus 481 ~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~~ 535 (535)
+++++|+|+.-.+-.||.+.+|+||+..|++-+..|++++.|||+||+++..+++
T Consensus 344 ~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~~ 398 (400)
T KOG0357|consen 344 MNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGES 398 (400)
T ss_pred cCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCCC
Confidence 8999999999888999999999999999999999999999999999999998874
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-58 Score=464.38 Aligned_cols=462 Identities=21% Similarity=0.310 Sum_probs=405.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHH----HHHHHHHHHhhhhh
Q 009425 22 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYE 97 (535)
Q Consensus 22 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----~~ll~~~~~~~~~~ 97 (535)
+..+|.++|...++++..|+++|..|+||+||+++|.++.|.|.|||||.|+.+++.+.++. ++++++++.+.++.
T Consensus 18 ~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~ 97 (550)
T KOG0356|consen 18 DIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEE 97 (550)
T ss_pred ccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCc
Confidence 46799999999999999999999999999999999999999999999999999999999985 99999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhh
Q 009425 98 IGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRC 177 (535)
Q Consensus 98 ~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~ 177 (535)
.||||||+++|++++..++.+-+.+|.+|..+.+|...+.+.+++.|.++++++. ..+.+.++|.+|.++
T Consensus 98 agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vt----t~eeIaqVAtiSAng------ 167 (550)
T KOG0356|consen 98 AGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVT----TPEEIAQVATISANG------ 167 (550)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHhhhcCC------
Confidence 9999999999999999999999999999999999999999999999999999998 788999999999998
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCccc-ceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCC
Q 009425 178 KRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLED-TELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKP 256 (535)
Q Consensus 178 ~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~d-s~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~ 256 (535)
+....+++.+|+.++++ .+-|.|+ .|.+..| .++++|+-|+++|.+|+|.+..+.. .++|+.+..
T Consensus 168 D~~ig~li~~a~~kvG~-------~GVItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~-----~~e~e~~~~ 233 (550)
T KOG0356|consen 168 DKEIGNLISDAMKKVGR-------KGVITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQ-----KVEFENALL 233 (550)
T ss_pred cHHHHHHHHHHHHHhCc-------CCeEEee--cCCccccchhhhhcccccccccCccccccchhh-----hhhhhhhhh
Confidence 57888999999999973 3556665 5666665 5899999999999999998765543 345554443
Q ss_pred CCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcE-----------EeecChhH
Q 009425 257 KTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPA-----------VRWVGGVE 325 (535)
Q Consensus 257 ~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~-----------i~~v~~~~ 325 (535)
.. ++..+++..++ .+.++...+...||++++++++.++|..|.-|+..+ ++.-++..
T Consensus 234 ll-~~kki~~v~~i-----------vp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~ 301 (550)
T KOG0356|consen 234 LL-SEKKISSVQSI-----------VPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNL 301 (550)
T ss_pred hh-hhhhhhHHHHH-----------hHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHh
Confidence 33 44456666665 688888888889999999999999999999887652 34556888
Q ss_pred HHHHHHHhCCeeccC------CCCCCCCCceeeeeEEEEEecCccceEEEEEecC-------------------------
Q 009425 326 LELIAIATGGRIVPR------FQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCA------------------------- 374 (535)
Q Consensus 326 L~~ia~~tGa~ii~~------~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------------------- 374 (535)
+.|++.+||+.++.. ++..+.++||.|..+.+.+ +...++.+-.
T Consensus 302 l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtk-----d~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ 376 (550)
T KOG0356|consen 302 LKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTK-----DDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEK 376 (550)
T ss_pred hhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEec-----CcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999973 5677788999999998753 3444444311
Q ss_pred ----------CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHH
Q 009425 375 ----------NSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAI 444 (535)
Q Consensus 375 ----------~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~ 444 (535)
.+++++|.++|.++.+++|.+.+++|||+++++++++| +|||||++.++|+..|.+........++.++
T Consensus 377 ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~ 455 (550)
T KOG0356|consen 377 EKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGV 455 (550)
T ss_pred hHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhH
Confidence 15789999999999999999999999999999999999 9999999999999999887653445678889
Q ss_pred HHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHH
Q 009425 445 RAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMIL 524 (535)
Q Consensus 445 ~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL 524 (535)
+++.+||..|..++++|||.|+..++.+++. ..+|||...|+++||.+.||+||+.|.+.+|..|..+|++++
T Consensus 456 eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~ 528 (550)
T KOG0356|consen 456 EIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLT 528 (550)
T ss_pred HHHHHHHhhhHHHHHHhcCCchHHHHHHHHh-------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHh
Confidence 9999999999999999999999999999982 179999999999999999999999999999999999999999
Q ss_pred hhhhhhcC
Q 009425 525 KIDDVISP 532 (535)
Q Consensus 525 ~iD~iI~~ 532 (535)
+++.+|..
T Consensus 529 tte~vvte 536 (550)
T KOG0356|consen 529 TTEAVVTE 536 (550)
T ss_pred hheeEEEe
Confidence 99998754
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=4.7e-41 Score=327.70 Aligned_cols=237 Identities=23% Similarity=0.379 Sum_probs=216.9
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhh--cCCCCcc-ceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEe
Q 009425 172 KMVNRCKRRLAEIAVKAVLAVADLE--RKDVNLD-LIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILT 248 (535)
Q Consensus 172 k~~~~~~~~la~l~~~a~~~~~~~~--~~~~~~~-~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~ 248 (535)
...+.|.++|++++++|+..+.+.. +..+|.. +|+|.+++||+++||++++|+++++++.++.||+.++||||++++
T Consensus 14 ~~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~ 93 (261)
T cd03334 14 SNDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQ 93 (261)
T ss_pred CChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEe
Confidence 3445688999999999999986432 2356765 599999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHH
Q 009425 249 CPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELEL 328 (535)
Q Consensus 249 ~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ 328 (535)
|+|++++++. ++++++.+.++|++++.+++++|.+.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 94 ~~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~r 166 (261)
T cd03334 94 GPLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLER 166 (261)
T ss_pred eeeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHH
Confidence 9999998863 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccCC-CCCCCCCceeeeeEEEEEecCc---cceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHH
Q 009425 329 IAIATGGRIVPRF-QELTPEKLGKAGLVREKSFGTT---QDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCV 404 (535)
Q Consensus 329 ia~~tGa~ii~~~-~~l~~~~lG~~~~v~~~~~g~~---~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~ 404 (535)
||++|||++++++ ++++++.+|+|+.|++.++|.+ ++++++|++|+.++++||+|||+|.+.++|+||+++||+++
T Consensus 167 Ia~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 167 ISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999994 5889999999999999999852 36899999999999999999999999999999999999999
Q ss_pred HHHHhhCCeEE
Q 009425 405 ARNLIRNNSIV 415 (535)
Q Consensus 405 ~~~~l~~g~vv 415 (535)
++++..+++++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99998887543
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=4e-37 Score=292.61 Aligned_cols=208 Identities=45% Similarity=0.701 Sum_probs=197.1
Q ss_pred hHHHHHHHHHhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcc
Q 009425 159 EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKR 238 (535)
Q Consensus 159 ~~l~~ia~tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~ 238 (535)
+.+.++|+|+++||+ ++|.+.|++++++|+..+++... .++.++|+|++++||+++||++++|++|++++.+++||+.
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~-~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~ 79 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR-MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKR 79 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC-CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeE
Confidence 468899999999999 99999999999999999975433 4567899999999999999999999999999999999999
Q ss_pred cccceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEE
Q 009425 239 IENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318 (535)
Q Consensus 239 ~~~~kI~ll~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i 318 (535)
++||||++++++|++ ||+++++|++.++++|.++||+++
T Consensus 80 ~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~~v 118 (209)
T cd03333 80 LENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIMAV 118 (209)
T ss_pred cCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCEEE
Confidence 999999999999987 999999999999999999999999
Q ss_pred eecChhHHHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHH
Q 009425 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSI 398 (535)
Q Consensus 319 ~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l 398 (535)
+++++++|+|||++|||++++++++++++.+|+|+.+++.++|+ +++++|++|..+..|||+|||+|+.+++|+||++
T Consensus 119 ~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~--~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l 196 (209)
T cd03333 119 RRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE--EKLTFIEGCKGGKAATILLRGATEVELDEVKRSL 196 (209)
T ss_pred EeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECC--eEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 8899999999899999999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 009425 399 HDALCVARNLIRN 411 (535)
Q Consensus 399 ~dal~~~~~~l~~ 411 (535)
+||++++++++++
T Consensus 197 ~dal~~~~~~~~~ 209 (209)
T cd03333 197 HDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.91 E-value=4.3e-24 Score=235.67 Aligned_cols=241 Identities=23% Similarity=0.380 Sum_probs=213.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhhh--cCCCCc-cceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCC
Q 009425 175 NRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPF 251 (535)
Q Consensus 175 ~~~~~~la~l~~~a~~~~~~~~--~~~~~~-~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l 251 (535)
..|.+.+..++++|...+.+.. ++.+|. ++++|+++.||...||+++.|+++.+..++..|.++.++|||+++.++|
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecch
Confidence 3588889999999999988654 334454 5899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHH
Q 009425 252 EPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAI 331 (535)
Q Consensus 252 ~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~ 331 (535)
+|++...+ +.+ ++.+.++|.++++..+.+|...+++++++.++|++.|+++|...+|.++-++++..|+||++
T Consensus 411 eyqrisn~----lsS---~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR 483 (1598)
T KOG0230|consen 411 EYQRISNQ----LSS---IETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISR 483 (1598)
T ss_pred hhhhhhcc----ccc---hHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHH
Confidence 99887653 444 45556678999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccCCCCCCCCCceeeeeEEEEEecCc---cceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 009425 332 ATGGRIVPRFQELTPEKLGKAGLVREKSFGTT---QDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNL 408 (535)
Q Consensus 332 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~---~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~ 408 (535)
+|||.|++++|.++...+|+|+.|++..+-.+ .++++||++|+...+|||+|||....++.++|+.++-++.++.++
T Consensus 484 ~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l 563 (1598)
T KOG0230|consen 484 CTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHL 563 (1598)
T ss_pred HhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988766422 367899999999999999999999999999999999999999888
Q ss_pred hhCCeEEeCCChHh
Q 009425 409 IRNNSIVYGGGAAE 422 (535)
Q Consensus 409 l~~g~vvpGGG~~e 422 (535)
.-+-.++.--|+..
T Consensus 564 ~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 564 ALETSFLADEGASI 577 (1598)
T ss_pred HHhhhhhhccCCcc
Confidence 76655666555543
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=70.57 E-value=19 Score=30.71 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCC
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGG 335 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa 335 (535)
...+.+++.|+++|++ ..+.+.+..+|..+||.++.-.+.+.=+-|-....+
T Consensus 56 ~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4578888999999998 589999999999999999987774433334443333
No 47
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=70.31 E-value=14 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecC
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVG 322 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~ 322 (535)
...+.+...++++||+ +.+.+.+...|.++||.++....
T Consensus 44 ~~~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp HHHHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTS
T ss_pred hHHHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCC
Confidence 3455666789999888 58999999999999999999733
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=62.76 E-value=19 Score=29.28 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecC
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVG 322 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~ 322 (535)
...+.+...++++|++ +++.+.+...|..+||.++....
T Consensus 54 ~~~~~l~~~~v~~vi~-~~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIV-GGIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEe-CCCCcCHHHHHHHCCCEEEEcCC
Confidence 3556666789999999 47999999999999999997766
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=54.28 E-value=61 Score=25.69 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCcEEEecCCCCHHHHH----HHHhCCCcEEeecChhHHHHHH
Q 009425 282 DDMVQKCKDVGATLVICQWGFDDEANH----LLMHRNLPAVRWVGGVELELIA 330 (535)
Q Consensus 282 ~~~v~~i~~~~~~lvi~~~~i~~~al~----~l~~~~I~~i~~v~~~~L~~ia 330 (535)
++-++.+.+-.+.+|++++++++.... ++.++||.++---++.+|-+.|
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 345666766778999999999988665 6678999998888877765554
No 50
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=52.83 E-value=39 Score=27.20 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=32.1
Q ss_pred HHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecC
Q 009425 284 MVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVG 322 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~ 322 (535)
..+.+...++++|++. ++.+.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 4555667899999985 6999999999999999997765
No 51
>PRK07283 hypothetical protein; Provisional
Probab=44.97 E-value=96 Score=25.27 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=37.4
Q ss_pred HHHHHHHcCCcEEEecCCCCHHHH----HHHHhCCCcEEeecChhHHHHHHHHhCC
Q 009425 284 MVQKCKDVGATLVICQWGFDDEAN----HLLMHRNLPAVRWVGGVELELIAIATGG 335 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~al----~~l~~~~I~~i~~v~~~~L~~ia~~tGa 335 (535)
..+.+.+-.+.+||++.+.++... +.+..++|.++...+++ .|..++|-
T Consensus 26 v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~---eLG~a~Gk 78 (98)
T PRK07283 26 VVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL---ELSAAVGK 78 (98)
T ss_pred HHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 455566677899999999999888 56667899998777664 56777773
No 52
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=42.49 E-value=2.2e+02 Score=28.60 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEee
Q 009425 276 QEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRW 320 (535)
Q Consensus 276 ~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~ 320 (535)
.-..+++++++.+...+..+++...+-....++.+.+.++-++..
T Consensus 205 ~~~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d~~~~ 249 (330)
T cd03465 205 FSLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGADVFSI 249 (330)
T ss_pred HhhHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCCeEee
Confidence 334556777888877777666633333334566666666655543
No 53
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=39.29 E-value=2.6e+02 Score=28.94 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhC
Q 009425 266 TVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHR 313 (535)
Q Consensus 266 s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~ 313 (535)
+++++++ .-+-+++++++.+++.|..+++...+-....+..+.+.
T Consensus 245 sp~~f~e---f~~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~ 289 (378)
T cd03308 245 RPKQFEK---FYWPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQEL 289 (378)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhc
Confidence 4455543 34566778888888777776665555444444444443
No 54
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=38.80 E-value=92 Score=25.50 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.1
Q ss_pred cCCcEEEecCCCCHHHHHHHHhCCCcEEeecC
Q 009425 291 VGATLVICQWGFDDEANHLLMHRNLPAVRWVG 322 (535)
Q Consensus 291 ~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~ 322 (535)
.++++||+ +++.+.+...|.++||.++..-.
T Consensus 64 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLC-AKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEee-hhhCccHHHHHHHCCCEEEEecC
Confidence 58999887 69999999999999999996544
No 55
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=34.94 E-value=1.7e+02 Score=23.05 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHH----HHHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANH----LLMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~----~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
..++.+.+-.+.+||++.+.++.... ++..++|.++..-++ +.|.+++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCc
Confidence 34566667788999999999987765 456789999655555 4566667753
No 56
>PRK07714 hypothetical protein; Provisional
Probab=34.88 E-value=1.7e+02 Score=23.78 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHHHHcCCcEEEecCCCCHHHHHH----HHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 284 MVQKCKDVGATLVICQWGFDDEANHL----LMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~al~~----l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
..+.+.+-.+.+||++.+.++....- +..++|.++...+++ .|..++|-.
T Consensus 26 v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~---eLG~a~Gk~ 79 (100)
T PRK07714 26 VLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQ---QLGHAIGKD 79 (100)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHH---HHHHHhCCC
Confidence 45566667789999999999876653 466789988776664 466667743
No 57
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=34.44 E-value=1.6e+02 Score=25.19 Aligned_cols=49 Identities=20% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHHcCCcEEEecCCCCHH-H----HHHHHhCCCcEEeecChhHHHHHHHHhCC
Q 009425 284 MVQKCKDVGATLVICQWGFDDE-A----NHLLMHRNLPAVRWVGGVELELIAIATGG 335 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~-a----l~~l~~~~I~~i~~v~~~~L~~ia~~tGa 335 (535)
.++.+.+-.+.+||++.++++. . ..++.+++|..+..-+++ +|..++|-
T Consensus 38 v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~---eLG~a~Gk 91 (122)
T PRK04175 38 TTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKK---DLGKAAGL 91 (122)
T ss_pred HHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHhCC
Confidence 4555555668899999999773 2 234677888876666554 45566664
No 58
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=33.70 E-value=1.1e+02 Score=30.08 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=40.4
Q ss_pred HHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEee-c-C----hhHHHHHHHHhCCe
Q 009425 285 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRW-V-G----GVELELIAIATGGR 336 (535)
Q Consensus 285 v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~-v-~----~~~L~~ia~~tGa~ 336 (535)
+|.|...+|+|||.....++...+.|.+.+|.++-- . . .+.++.++.++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 677888899999998888888889999999877531 1 1 45578888888854
No 59
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=33.70 E-value=1.9e+02 Score=22.72 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHH----HHHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANH----LLMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~----~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
+.++.|.+-.+.+|+++.+.++.... ++.+++|.++.--++ +.|..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM---KKLGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCC
Confidence 34566666778999999999997654 458889998777665 4466667743
No 60
>PRK06683 hypothetical protein; Provisional
Probab=33.53 E-value=1.8e+02 Score=22.82 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHH----HHHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANH----LLMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~----~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
..++.+.+-.+.+||++.+.++...+ ++..++|.++..-++ +.|..++|-.
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~ 72 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV---RKLGKVAGIQ 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCc
Confidence 34566666788999999999987765 467889999777655 4566777754
No 61
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=32.56 E-value=1.5e+02 Score=24.93 Aligned_cols=50 Identities=10% Similarity=0.172 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecC----hhHHHHHHHHhCC
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVG----GVELELIAIATGG 335 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~----~~~L~~ia~~tGa 335 (535)
..++.+ .++++||+ .+|.+.+...|.+.||.+++.-. .+.|+.+.+..-.
T Consensus 56 ~~~~~l--~~c~vvi~-~~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~ 109 (119)
T TIGR02663 56 PKIEAL--KDCAILYC-LAIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKG 109 (119)
T ss_pred HHHHHh--CCCcEEEE-hhcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcC
Confidence 334444 58899888 69999999999999999997432 5667777776643
No 62
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=32.33 E-value=1.7e+02 Score=24.74 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=32.9
Q ss_pred HHHHHHHcCCcEEEecCCCCHH-H----HHHHHhCCCcEEeecChhHHHHHHHHhCC
Q 009425 284 MVQKCKDVGATLVICQWGFDDE-A----NHLLMHRNLPAVRWVGGVELELIAIATGG 335 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~-a----l~~l~~~~I~~i~~v~~~~L~~ia~~tGa 335 (535)
.++.+.+-.+.+||++.++++. . .+++.+.+|..+..-++++ |..++|-
T Consensus 34 v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~e---LG~a~Gk 87 (117)
T TIGR03677 34 VTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKED---LGAAAGL 87 (117)
T ss_pred HHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 3455555668899999999764 3 3457788888766666644 5555663
No 63
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=31.80 E-value=1.3e+02 Score=27.18 Aligned_cols=51 Identities=27% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEe-ec-C-----hhHHHHHHHHhCC
Q 009425 285 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR-WV-G-----GVELELIAIATGG 335 (535)
Q Consensus 285 v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~-~v-~-----~~~L~~ia~~tGa 335 (535)
+|.|.+.+|+|||......+...+.|.+.++.++- .. . .+.++.+++++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 66677889999998766666677889999996543 21 1 2456677777774
No 64
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=30.97 E-value=76 Score=30.57 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChh
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGV 324 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~ 324 (535)
+++.+..+.|+++|++...-...+.++..+.||+.+..++..
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 678899999999999999999999999999999998876643
No 65
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=30.23 E-value=1.6e+02 Score=23.87 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=27.2
Q ss_pred cCCcEEEecCCCCHHHHHHHHhCCCcEEeecC
Q 009425 291 VGATLVICQWGFDDEANHLLMHRNLPAVRWVG 322 (535)
Q Consensus 291 ~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~ 322 (535)
.++++||+ ++|.+.+...|.++||.++....
T Consensus 60 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYC-AAIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEE-hhcChhHHHHHHHcCCEEEEcCC
Confidence 58899887 69999999999999999997654
No 66
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=29.65 E-value=1.4e+02 Score=30.71 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=38.8
Q ss_pred HHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeec---C----hhHHHHHHHHhCC
Q 009425 284 MVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV---G----GVELELIAIATGG 335 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v---~----~~~L~~ia~~tGa 335 (535)
-+|+|...+|+|||....-.+...+.|.+.||.++..- + .+.++.+++++|-
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 37788889999999876556667889999999986532 1 2456677777775
No 67
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=28.34 E-value=59 Score=27.90 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCC--CHHHHHHHHhCCCcEEee
Q 009425 278 QKYFDDMVQKCKDVGATLVICQWGF--DDEANHLLMHRNLPAVRW 320 (535)
Q Consensus 278 ~~~l~~~v~~i~~~~~~lvi~~~~i--~~~al~~l~~~~I~~i~~ 320 (535)
.+...+.++++.+.+++.||++++. .+..++++.++++.+++-
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 3344677888999999999988875 678888999999998873
No 68
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=28.30 E-value=2.1e+02 Score=28.99 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeec
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIV 338 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii 338 (535)
+.++.+.+.++++|++..+.... .+.|.++||.++-.+..-..-+-+.-.|+..+
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 46777888999999998877665 58899999999987765444455555676554
No 69
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=28.26 E-value=1.1e+02 Score=24.31 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHH-----HHHHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEAN-----HLLMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al-----~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
+..+.+.+-.+.+|+.+.++++... .++.+++|.++...++. .|.+++|-.
T Consensus 22 ~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~---eLG~~~g~~ 77 (95)
T PF01248_consen 22 EVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKE---ELGRACGKK 77 (95)
T ss_dssp HHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHH---HHHHHTTSS
T ss_pred HHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHH---HHHHHHCCC
Confidence 4556666667889999999987443 46788999998877654 466666754
No 70
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=28.25 E-value=1e+02 Score=30.27 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChh
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGV 324 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~ 324 (535)
+++.+..+.|+++|++...-+..+.++..+.||+.+..++..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 678999999999999999999999999999999998876643
No 71
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.14 E-value=1.8e+02 Score=27.60 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=38.0
Q ss_pred HHHHHHcCCcEEEecCCCCHH-HHHHHHhCCCcEEeec--C----hhHHHHHHHHhCCe
Q 009425 285 VQKCKDVGATLVICQWGFDDE-ANHLLMHRNLPAVRWV--G----GVELELIAIATGGR 336 (535)
Q Consensus 285 v~~i~~~~~~lvi~~~~i~~~-al~~l~~~~I~~i~~v--~----~~~L~~ia~~tGa~ 336 (535)
+|.|.+.+|+|||.....++. ..+.|.+.++.++-.- . .+.++.|+.++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 677788899999986655454 4888999999765421 1 45588888888864
No 72
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=27.26 E-value=2.3e+02 Score=23.62 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=35.6
Q ss_pred HHHHHHHcCCcEEEecCCCCHHHH----HHHHhCCCcEEee-cChhHHHHHHHHhCC
Q 009425 284 MVQKCKDVGATLVICQWGFDDEAN----HLLMHRNLPAVRW-VGGVELELIAIATGG 335 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~al----~~l~~~~I~~i~~-v~~~~L~~ia~~tGa 335 (535)
.++.+.+-.+.+||++.+.++... +++..++|.++.. -.+ +.|..++|-
T Consensus 33 vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk 86 (108)
T PTZ00106 33 TLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGR 86 (108)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCC
Confidence 455566677899999999988754 4667789998765 444 456777774
No 73
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=26.92 E-value=2.5e+02 Score=28.12 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeec
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIV 338 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii 338 (535)
+.++.+.+.++++|.+..+..+...+.+.+.|+.++-.+..-+.-+-+.-.|+..+
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 45777778899999988887777889999999998877765444444444565444
No 74
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=26.05 E-value=76 Score=33.49 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhcc
Q 009425 395 KRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADR 435 (535)
Q Consensus 395 ~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~ 435 (535)
++.+.+|+..+|++ +.|-+|.|||+-+-.+...|+.+++.
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 45677888888776 56779999999888888888887754
No 75
>PRK03298 hypothetical protein; Provisional
Probab=25.83 E-value=1.6e+02 Score=27.90 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=28.2
Q ss_pred HHHHHHHHc-C-CcE--EEecCCCCHHHHHHHHhCCCcEEe
Q 009425 283 DMVQKCKDV-G-ATL--VICQWGFDDEANHLLMHRNLPAVR 319 (535)
Q Consensus 283 ~~v~~i~~~-~-~~l--vi~~~~i~~~al~~l~~~~I~~i~ 319 (535)
+.++.+.+. + .++ |+++.+|.+.|..++.++|+.++.
T Consensus 167 RYve~l~rd~~~~~VRGIlvAp~It~~Ar~Ll~drGle~v~ 207 (224)
T PRK03298 167 RYLELLNRDPLLAPVRGVFAAQEIKPQARTLAEDRGIRCVT 207 (224)
T ss_pred HHHHHHhhCcCcCCceEEEECCcCCHHHHHHHHHcCCeEEE
Confidence 445555433 2 234 999999999999999999999875
No 76
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.67 E-value=2.9e+02 Score=20.63 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHH
Q 009425 393 ETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAF 447 (535)
Q Consensus 393 e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~ 447 (535)
--.++++|+++.+..++++|. ++ .+.. -+..+..+ ++|+-.++.
T Consensus 19 Aed~AieDtiy~L~~al~~g~-I~----~d~~-lK~vR~La-----ReQF~~Ral 62 (65)
T PF09454_consen 19 AEDHAIEDTIYYLDRALQRGS-ID----LDTF-LKQVRSLA-----REQFLKRAL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-S-----HHHH-HHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CC----HHHH-HHHHHHHH-----HHHHHHHHH
Confidence 346789999999999999995 31 2222 24445554 566655443
No 77
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=24.59 E-value=1.7e+02 Score=27.45 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecC----hhHHHHHHHHhCCeecc
Q 009425 275 QQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVG----GVELELIAIATGGRIVP 339 (535)
Q Consensus 275 ~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~----~~~L~~ia~~tGa~ii~ 339 (535)
++|++++.+.++.+.+...++.++=....+.+.....++|...+-++. .+.+-.++.-.|+.++-
T Consensus 53 ~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~ 121 (210)
T PF00809_consen 53 EEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVL 121 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEE
Confidence 456788899999998744455566577888888876666777776544 23455555556665553
No 78
>PF12846 AAA_10: AAA-like domain
Probab=24.54 E-value=1.6e+02 Score=28.61 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCcEEEecCCCCHHH-----HHHHHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 281 FDDMVQKCKDVGATLVICQWGFDDEA-----NHLLMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 281 l~~~v~~i~~~~~~lvi~~~~i~~~a-----l~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
+..++....+.|+.+++....+++.. -..+...+...+-++...+.+.+++..|-+
T Consensus 242 ~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 242 LDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 46778888889999999999998888 789999999999999988888899988754
No 79
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=23.75 E-value=1.4e+02 Score=29.25 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChh
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGV 324 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~ 324 (535)
+++++....|+++|+.-......+.+...+.||+.+..++-.
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~ 253 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGG 253 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCC
Confidence 578999999999999999999999999999999998877643
No 80
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=4.2e+02 Score=22.18 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=42.3
Q ss_pred HHHHHcCCcEEEecCCC------CHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 286 QKCKDVGATLVICQWGF------DDEANHLLMHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 286 ~~i~~~~~~lvi~~~~i------~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
+.+...++.+|++.-++ ++.+..+|.+.++-++.....+.++|.-..-|+.
T Consensus 55 e~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 55 EELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 33444689998886654 8999999999999999999999999999888863
No 81
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=22.51 E-value=1e+02 Score=29.69 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecCh
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGG 323 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~ 323 (535)
+++.+..+.|+++|++...-...+.++-.+.||+.+..++.
T Consensus 183 emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 183 EMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 57888999999999999999999999999999998876553
No 82
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=22.25 E-value=3.6e+02 Score=26.24 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHc-CCcEEEecCCCCHHHHHHHHhCCCcEEeecChh---HHHHHHHHhCCeecc
Q 009425 275 QQEQKYFDDMVQKCKDV-GATLVICQWGFDDEANHLLMHRNLPAVRWVGGV---ELELIAIATGGRIVP 339 (535)
Q Consensus 275 ~~E~~~l~~~v~~i~~~-~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~---~L~~ia~~tGa~ii~ 339 (535)
+.|++++.+.++.+.+. +++ ++-...++.++....+.|.-.+..++-. ++-.++.-.|+.++-
T Consensus 57 ~~E~~rl~~~v~~~~~~~~~p--lsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 57 EEELNRVVPVIKALRDQPDVP--ISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCCe--EEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEE
Confidence 34667788888888765 554 5667888999888877787777665543 255555556665553
No 83
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.79 E-value=1.8e+02 Score=26.84 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCC----CcEEeecC
Q 009425 280 YFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRN----LPAVRWVG 322 (535)
Q Consensus 280 ~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~----I~~i~~v~ 322 (535)
.+++.++.+...+++++++..+.++..-.+|..-. |.++..++
T Consensus 77 ~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 46788999999999999999999999888776544 55554443
No 84
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=21.65 E-value=2.6e+02 Score=27.06 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=35.5
Q ss_pred HHHHHHcCCcEEEecCC-CCHHHHHHHHhCCCcEEeec--C----hhHHHHHHHHhCC
Q 009425 285 VQKCKDVGATLVICQWG-FDDEANHLLMHRNLPAVRWV--G----GVELELIAIATGG 335 (535)
Q Consensus 285 v~~i~~~~~~lvi~~~~-i~~~al~~l~~~~I~~i~~v--~----~~~L~~ia~~tGa 335 (535)
+|++...+|+||+...+ -.....+.|.+.||.++.-- . .+.++.+++++|-
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 67778889999997543 34567788999999876532 1 2446666767764
No 85
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=21.49 E-value=3.9e+02 Score=22.62 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHH-----HHHHHhCCCcEEeecChhHHHHHH
Q 009425 283 DMVQKCKDVGATLVICQWGFDDEA-----NHLLMHRNLPAVRWVGGVELELIA 330 (535)
Q Consensus 283 ~~v~~i~~~~~~lvi~~~~i~~~a-----l~~l~~~~I~~i~~v~~~~L~~ia 330 (535)
..++.+.+-.+.+|+++.+++|.- ..+|.++||..+---++.+|-+.+
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~ 86 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAV 86 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 345555556689999999999432 235677899988888876654443
No 86
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.36 E-value=3.9e+02 Score=21.98 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.9
Q ss_pred HHHHHHHcCCcEEEecCCCCHHHHHHH----HhCCCcEEeecChhHHHHHHHHhCCe
Q 009425 284 MVQKCKDVGATLVICQWGFDDEANHLL----MHRNLPAVRWVGGVELELIAIATGGR 336 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~al~~l----~~~~I~~i~~v~~~~L~~ia~~tGa~ 336 (535)
..+.+.+-++.+||.+.+.++.-..-+ ...++.++...++++ |..++|-.
T Consensus 25 v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~ 78 (104)
T PRK05583 25 CEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRD 78 (104)
T ss_pred HHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCC
Confidence 455666677899999999988766544 557888888766644 66667754
No 87
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.63 E-value=2.3e+02 Score=26.88 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=35.1
Q ss_pred HHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeec----ChhHHHHHHHHhCCe
Q 009425 285 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV----GGVELELIAIATGGR 336 (535)
Q Consensus 285 v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v----~~~~L~~ia~~tGa~ 336 (535)
+|+|...+|+|||+.....+ ..+.|.+.+..++-.. -.+.++.++.++|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 67778889999998776655 6677777764443221 156688888888753
No 88
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=20.21 E-value=1.7e+02 Score=20.56 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHH
Q 009425 110 GSLLEQAEKLLERGIHPIRIAE 131 (535)
Q Consensus 110 ~~ll~~~~~li~~gi~p~~i~~ 131 (535)
.+-|+-+.+|++.|++|..+..
T Consensus 21 ~etL~ici~L~e~GVnPeaLA~ 42 (48)
T PF12554_consen 21 RETLSICIELCENGVNPEALAA 42 (48)
T ss_pred HHHHHHHHHHHHCCCCHHHHHH
Confidence 3445556777777888776544
No 89
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=20.14 E-value=4.5e+02 Score=21.33 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=35.7
Q ss_pred HHHHHHHcCCcEEEecCCCCHHHHH----HHHhCCCcEEeec-ChhHHHHHHHHhCC
Q 009425 284 MVQKCKDVGATLVICQWGFDDEANH----LLMHRNLPAVRWV-GGVELELIAIATGG 335 (535)
Q Consensus 284 ~v~~i~~~~~~lvi~~~~i~~~al~----~l~~~~I~~i~~v-~~~~L~~ia~~tGa 335 (535)
.++.+.+..+.+||++.+.++.... ++..++|.++... ++. .|.+++|-
T Consensus 24 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~---eLG~a~Gk 77 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSV---ELGTLCGK 77 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHH---HHHHHhCC
Confidence 4566666778999999999876554 5578899987764 554 46677774
Done!