BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009427
(535 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZZF4|GPD1_CYBJA Glycerol-3-phosphate dehydrogenase [NAD(+)] 1 OS=Cyberlindnera
jadinii GN=gpd1 PE=3 SV=1
Length = 393
Score = 36.2 bits (82), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 96 GLFSQSDLSDKAVGTFDVIV-CGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISR 154
G +Q + ++ G D+I C G + +A A++ G VER L G+ + I+
Sbjct: 291 GETNQDTFTKESAGVADLITTCSGGRNVRVAKAMAITGKSAVEVERELLNGQSAQGIITS 350
Query: 155 KELLELVESGILVED 169
KE+ EL+ + L ++
Sbjct: 351 KEVHELLAAKNLTKE 365
>sp|Q3M8T9|LEU3_ANAVT 3-isopropylmalate dehydrogenase OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=leuB PE=3 SV=1
Length = 362
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 299 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 355
+R L EY V L +L + + P F+ I+ FGD + +
Sbjct: 206 DRITKLSQEYPDVELSHLYVDNAAMQLVRA------PKQFDTIVTGNLFGDILSDAAAML 259
Query: 356 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 414
G G L + LG GV+E V G D L NP LSA+ + + A++ Q +D
Sbjct: 260 TGSIGMLPSASLGASGPGVFEPVHGSAPDIAGLDKANPLAQVLSAAMMLRYALNQPQAAD 319
>sp|A0QRG8|MGTA_MYCS2 GDP-mannose-dependent alpha-mannosyltransferase OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=mgtA PE=3
SV=1
Length = 375
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 314 DNLEIQRVIYGIFPTYRDSPLPAAFNRILQF-----GDASGIQSPVSFGGFGSL--TRHL 366
D + + RV +FP PL R++ D + SP + G+G L RHL
Sbjct: 54 DGVRVHRVPSRMFPKITSLPLGVPRPRMIGVLRGFDPDVVHLASP-ALLGYGGLHAARHL 112
Query: 367 GRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSP 417
G S V++ F +SY + + + A+W + R + ++ ++P
Sbjct: 113 GVPSVAVFQTDVAGFAESYGMGVAS------RAAWAWTRHLHSRADRTLAP 157
>sp|O13306|ERG1_CANGA Squalene monooxygenase OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG1 PE=3
SV=2
Length = 489
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 104 SDKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVE 162
+D+ V T+D ++ G G +G +ATAL+ KG +V IVER EW+ + + EL++
Sbjct: 6 ADETV-TYDALIVGAGVIGPCVATALARKGKKVLIVER--------EWSQPDRIVGELMQ 56
Query: 163 SG 164
G
Sbjct: 57 PG 58
>sp|Q8YXA2|LEU3_NOSS1 3-isopropylmalate dehydrogenase OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=leuB PE=3 SV=1
Length = 362
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 299 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 355
+R +L EY V L +L + + P F+ I+ FGD + +
Sbjct: 206 DRITNLSQEYPDVELSHLYVDNAAMQLVRA------PKQFDTIVTGNLFGDILSDAAAML 259
Query: 356 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 414
G G L + LG GV+E V G D NP LSA+ + + A+ Q +D
Sbjct: 260 TGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYALDQPQAAD 319
>sp|Q7VSN4|PYRE_BORPE Orotate phosphoribosyltransferase OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=pyrE PE=3 SV=1
Length = 224
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 91 VSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEW 150
V + AG ++Q+ L D V FD++ GI +ATA S VA+ + GR+ +
Sbjct: 49 VGTLAGFYAQA-LIDSGV-AFDMLFGPAYKGIPLATATS-----VALAGHGAMAGRDVPF 101
Query: 151 NISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEI 210
+RKE + E G LV GK + ++D++ G S + +EI
Sbjct: 102 AFNRKEAKDHGEGGTLVG---------------APLTGK-VVIIDDVITAGTSVRESVEI 145
Query: 211 VK 212
++
Sbjct: 146 IR 147
>sp|Q7WEU9|PYRE_BORBR Orotate phosphoribosyltransferase OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=pyrE PE=3
SV=2
Length = 224
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 91 VSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEW 150
V + AG ++Q+ L D V FD++ GI +ATA S VA+ + GR+ +
Sbjct: 49 VGALAGFYAQA-LVDSGV-AFDMLFGPAYKGIPLATATS-----VALAGHRAMAGRDVPF 101
Query: 151 NISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEI 210
+RKE + E G LV GK + ++D++ G S + +EI
Sbjct: 102 AFNRKEAKDHGEGGTLVG---------------APLTGK-VVIIDDVITAGTSVRESVEI 145
Query: 211 VK 212
++
Sbjct: 146 IR 147
>sp|P32476|ERG1_YEAST Squalene monooxygenase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ERG1 PE=1 SV=2
Length = 496
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESG 164
T+D IV G G +G +AT L+ KG +V IVER +W + + + EL++ G
Sbjct: 18 TYDAIVIGAGVIGPCVATGLARKGKKVLIVER--------DWAMPDRIVGELMQPG 65
>sp|Q9EVH5|LEU3_BUCUE 3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp.
Uroleucon erigeronensis GN=leuB PE=3 SV=1
Length = 364
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 295 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRIL---QFGDASGIQ 351
+E++E+ + Y V L +L I I I P+ F+ IL FGD +
Sbjct: 206 KEIVEK---ISKNYPDVHLSHLYIDNAIMQIIKD------PSQFDVILCSNLFGDIVSDE 256
Query: 352 SPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 410
G G L + L + G+YE G D ++ NP LS S L + M+ K
Sbjct: 257 CAAITGSIGMLPSASLNEKNFGLYEPAGGSAPDIAGKNIANPIAQILSVSMLVRHGMNLK 316
Query: 411 QQSD 414
+ +D
Sbjct: 317 KIAD 320
>sp|Q7W3H5|PYRE_BORPA Orotate phosphoribosyltransferase OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) GN=pyrE PE=3
SV=2
Length = 224
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 91 VSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEW 150
V + AG ++Q+ L D V FD++ GI +ATA S VA+ + GR+ +
Sbjct: 49 VGALAGFYAQA-LVDSGV-AFDMLFGPAYKGIPLATATS-----VALAGHAAMAGRDVPF 101
Query: 151 NISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEI 210
+RKE + E G LV GK + ++D++ G S + +EI
Sbjct: 102 AFNRKEAKDHGEGGTLVG---------------APLTGK-VVIIDDVITAGTSVRESVEI 145
Query: 211 VK 212
++
Sbjct: 146 IR 147
>sp|Q88VK2|DPO3_LACPL DNA polymerase III PolC-type OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=polC PE=3 SV=1
Length = 1437
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 229 SSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ-AFPAGSGPLDRTTYMFTYIDP 287
S++ TYE+ V+LLAE +++ + L A+G + FP S + T ID
Sbjct: 113 SNVPTYEDGRVILLAENEVIQNFLTNQALGPIESTYHRLGFPKFS--------VHTMIDE 164
Query: 288 QAGSPKLEELLER 300
A K++E E+
Sbjct: 165 SASQAKIKEFHEQ 177
>sp|O48651|ERG1_PANGI Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
Length = 539
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 105 DKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKGREQEWNISRKELLELVE 162
+ G+ DVI+ G G G +A L+ G RV ++ER+ T + R + L+L+E
Sbjct: 69 ENIAGSTDVIIVGAGVAGSALAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIE 128
Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKG-------EIWVEDILNLGVSPAKLIEIVKKRF 215
G+ ED ++E A + +GK E + D+ + ++ ++++
Sbjct: 129 LGL--EDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKA 186
Query: 216 ISLGGVIFEGYSVSSI 231
SL V E +V+S+
Sbjct: 187 ASLPNVRMEQGTVTSL 202
>sp|Q2JTN8|LEU3_SYNJA 3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain
JA-3-3Ab) GN=leuB PE=3 SV=1
Length = 381
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 299 ERYWDLMPEYQGVTL-----DNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGI 350
ER + EY V L DN +Q V + P F+ IL FGD
Sbjct: 212 ERVTAIAAEYPDVELSHLYVDNAAMQLVRW-----------PKQFDVILTENLFGDILSD 260
Query: 351 QSPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSA 409
++ + G G L + LG GVYE V G D NP LS + L + ++
Sbjct: 261 EAAMLTGSIGMLPSASLGSSGPGVYEPVHGSAPDIAGQDKANPIAQVLSGAMLLRYSLDQ 320
Query: 410 KQQSD 414
Q +D
Sbjct: 321 PQAAD 325
>sp|C3MQN2|GLYA_SULIL Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|C3NGT4|GLYA_SULIN Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|C3N6F2|GLYA_SULIA Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
M.16.27) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|C3NEW0|GLYA_SULIY Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|C3MWN2|GLYA_SULIM Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|Q9SA14|LEU31_ARATH 3-isopropylmalate dehydrogenase 1, chloroplastic OS=Arabidopsis
thaliana GN=IMDH1 PE=1 SV=2
Length = 404
Score = 32.7 bits (73), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 299 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 355
+R L EY V L ++ + + RD P F+ I+ FGD ++ +
Sbjct: 245 KRVTALASEYPDVELSHMYVDNAAMQLV---RD---PKQFDTIVTNNIFGDILSDEASMI 298
Query: 356 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 414
G G L + LG G++E + G D NP LSA+ L + + ++ +
Sbjct: 299 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAK 358
Query: 415 VSPDFINELLYVNFQC 430
+ D + + L F+
Sbjct: 359 MIEDAVVDALNKGFRT 374
>sp|Q9FMT1|LEU33_ARATH 3-isopropylmalate dehydrogenase 3, chloroplastic OS=Arabidopsis
thaliana GN=IMDH3 PE=1 SV=1
Length = 409
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 299 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 355
+R L EY V L ++ + + RD P F+ I+ FGD ++ +
Sbjct: 248 KRVTALASEYPDVELSHMYVDNAAMQLI---RD---PKQFDTIVTNNIFGDILSDEASMI 301
Query: 356 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAM----SAK 410
G G L + LG G++E + G D NP LSA+ L + + +AK
Sbjct: 302 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAK 361
Query: 411 QQSDVSPDFINE 422
+ D D +N+
Sbjct: 362 RIEDAVVDALNK 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,971,323
Number of Sequences: 539616
Number of extensions: 9137042
Number of successful extensions: 21754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 21747
Number of HSP's gapped (non-prelim): 54
length of query: 535
length of database: 191,569,459
effective HSP length: 122
effective length of query: 413
effective length of database: 125,736,307
effective search space: 51929094791
effective search space used: 51929094791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)