Query 009427
Match_columns 535
No_of_seqs 626 out of 3527
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02697 lycopene epsilon cycl 100.0 1.3E-31 2.9E-36 289.2 31.2 404 37-487 52-527 (529)
2 KOG1298 Squalene monooxygenase 100.0 3E-32 6.5E-37 270.1 20.7 371 107-521 42-473 (509)
3 PLN02463 lycopene beta cyclase 100.0 1E-29 2.2E-34 270.5 29.6 355 107-487 25-443 (447)
4 PLN02985 squalene monooxygenas 100.0 5.1E-30 1.1E-34 278.1 25.9 363 108-503 41-464 (514)
5 PTZ00367 squalene epoxidase; P 100.0 2.5E-27 5.4E-32 258.6 26.7 363 110-500 33-476 (567)
6 TIGR01790 carotene-cycl lycope 99.9 4.2E-26 9E-31 240.3 24.7 335 112-468 1-385 (388)
7 COG0654 UbiH 2-polyprenyl-6-me 99.9 1.7E-25 3.7E-30 235.7 25.8 266 110-379 2-318 (387)
8 PRK08013 oxidoreductase; Provi 99.9 3.9E-25 8.5E-30 234.0 23.3 268 110-380 3-323 (400)
9 PRK08020 ubiF 2-octaprenyl-3-m 99.9 7.1E-25 1.5E-29 231.2 23.6 266 110-380 5-322 (391)
10 PRK08773 2-octaprenyl-3-methyl 99.9 7.3E-25 1.6E-29 231.3 23.0 266 110-380 6-323 (392)
11 PRK06617 2-octaprenyl-6-methox 99.9 1.2E-24 2.7E-29 228.2 23.2 255 111-373 2-307 (374)
12 PRK05714 2-octaprenyl-3-methyl 99.9 4.6E-24 1E-28 226.1 27.0 266 110-380 2-326 (405)
13 COG0644 FixC Dehydrogenases (f 99.9 2.9E-24 6.2E-29 227.0 24.4 275 110-401 3-325 (396)
14 PLN00093 geranylgeranyl diphos 99.9 4.8E-24 1E-28 228.0 25.8 259 107-380 36-350 (450)
15 PRK07494 2-octaprenyl-6-methox 99.9 2.1E-24 4.6E-29 227.3 22.1 262 110-375 7-316 (388)
16 PRK07333 2-octaprenyl-6-methox 99.9 4.6E-24 1E-28 225.8 24.7 264 111-379 2-320 (403)
17 PRK07364 2-octaprenyl-6-methox 99.9 3.9E-24 8.5E-29 227.2 24.2 268 107-379 15-334 (415)
18 PRK08850 2-octaprenyl-6-methox 99.9 4.1E-24 8.9E-29 226.6 24.1 266 110-380 4-323 (405)
19 TIGR01988 Ubi-OHases Ubiquinon 99.9 4.3E-24 9.2E-29 224.3 22.2 263 112-379 1-316 (385)
20 TIGR01989 COQ6 Ubiquinone bios 99.9 2.8E-24 6E-29 230.1 20.7 152 111-267 1-189 (437)
21 PRK10015 oxidoreductase; Provi 99.9 9.9E-24 2.1E-28 224.9 23.2 286 109-401 4-356 (429)
22 PRK06834 hypothetical protein; 99.9 3.5E-23 7.6E-28 224.0 27.4 264 110-379 3-305 (488)
23 TIGR02023 BchP-ChlP geranylger 99.9 2.2E-23 4.7E-28 219.9 25.0 257 111-380 1-305 (388)
24 PRK06183 mhpA 3-(3-hydroxyphen 99.9 7E-23 1.5E-27 224.8 29.7 267 109-378 9-325 (538)
25 TIGR02028 ChlP geranylgeranyl 99.9 1.7E-23 3.6E-28 221.3 23.8 264 111-389 1-322 (398)
26 PRK08849 2-octaprenyl-3-methyl 99.9 1.8E-23 3.8E-28 220.2 23.8 154 110-267 3-173 (384)
27 PRK08243 4-hydroxybenzoate 3-m 99.9 8.2E-23 1.8E-27 215.7 28.2 264 110-379 2-319 (392)
28 PRK06185 hypothetical protein; 99.9 3.4E-23 7.3E-28 219.6 24.9 276 109-388 5-333 (407)
29 PRK07608 ubiquinone biosynthes 99.9 3.5E-23 7.5E-28 218.0 24.6 261 110-377 5-318 (388)
30 PF01494 FAD_binding_3: FAD bi 99.9 3.7E-24 8E-29 221.0 15.7 262 110-378 1-330 (356)
31 PRK09126 hypothetical protein; 99.9 2E-23 4.3E-28 220.2 20.7 266 110-379 3-320 (392)
32 TIGR01984 UbiH 2-polyprenyl-6- 99.9 5.2E-23 1.1E-27 216.2 23.5 260 112-377 1-314 (382)
33 PRK06184 hypothetical protein; 99.9 9.4E-23 2E-27 222.1 25.5 268 110-379 3-321 (502)
34 PRK10157 putative oxidoreducta 99.9 9.3E-23 2E-27 217.5 24.5 284 110-400 5-355 (428)
35 PRK06996 hypothetical protein; 99.9 5.3E-23 1.2E-27 217.6 22.0 264 107-375 8-327 (398)
36 PRK07045 putative monooxygenas 99.9 3.8E-23 8.3E-28 217.9 20.8 264 110-378 5-324 (388)
37 PRK08244 hypothetical protein; 99.9 1.3E-22 2.8E-27 220.6 25.2 262 110-378 2-311 (493)
38 PRK07190 hypothetical protein; 99.9 2.3E-22 4.9E-27 217.5 26.2 267 110-379 5-315 (487)
39 TIGR02032 GG-red-SF geranylger 99.9 2.5E-22 5.5E-27 202.5 23.7 253 111-373 1-295 (295)
40 PRK07588 hypothetical protein; 99.9 5.8E-22 1.3E-26 209.1 26.7 258 112-375 2-315 (391)
41 PF05834 Lycopene_cycl: Lycope 99.9 3E-22 6.5E-27 210.0 22.9 312 112-456 1-361 (374)
42 PRK05732 2-octaprenyl-6-methox 99.9 1E-21 2.2E-26 207.3 25.9 267 110-379 3-322 (395)
43 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 2E-21 4.4E-26 205.0 27.5 154 110-268 2-170 (390)
44 PRK05868 hypothetical protein; 99.9 8.8E-22 1.9E-26 206.4 23.1 157 111-270 2-169 (372)
45 PRK06847 hypothetical protein; 99.9 2.3E-21 5E-26 203.2 26.2 156 110-270 4-172 (375)
46 PRK08132 FAD-dependent oxidore 99.9 1.3E-21 2.8E-26 215.3 24.3 278 109-389 22-348 (547)
47 PRK06126 hypothetical protein; 99.9 2.4E-21 5.2E-26 213.2 25.7 267 110-378 7-342 (545)
48 PRK08163 salicylate hydroxylas 99.9 2.2E-21 4.7E-26 204.9 23.7 155 110-269 4-174 (396)
49 PRK08294 phenol 2-monooxygenas 99.9 7.6E-21 1.6E-25 211.5 29.1 157 108-267 30-216 (634)
50 PRK06753 hypothetical protein; 99.9 1.1E-21 2.4E-26 205.5 21.2 254 112-374 2-305 (373)
51 PRK06475 salicylate hydroxylas 99.9 1.9E-21 4.1E-26 205.9 23.0 152 111-267 3-173 (400)
52 PRK11445 putative oxidoreducta 99.9 2.1E-21 4.6E-26 202.0 21.8 259 111-377 2-302 (351)
53 PRK07538 hypothetical protein; 99.9 4.9E-21 1.1E-25 203.6 24.3 157 112-270 2-174 (413)
54 PRK07236 hypothetical protein; 99.9 3.9E-20 8.4E-25 195.0 23.9 153 110-270 6-163 (386)
55 PLN02927 antheraxanthin epoxid 99.9 6.2E-20 1.3E-24 201.9 26.1 266 108-378 79-406 (668)
56 TIGR03219 salicylate_mono sali 99.8 6.1E-20 1.3E-24 195.3 20.0 154 112-269 2-167 (414)
57 KOG2614 Kynurenine 3-monooxyge 99.8 9.3E-20 2E-24 184.9 19.8 257 111-378 3-327 (420)
58 TIGR01789 lycopene_cycl lycope 99.8 2.6E-19 5.7E-24 187.2 22.6 310 112-456 1-358 (370)
59 PF08491 SE: Squalene epoxidas 99.7 1.7E-17 3.6E-22 162.7 12.1 155 325-508 116-270 (276)
60 PRK08255 salicylyl-CoA 5-hydro 99.7 1.1E-15 2.3E-20 174.1 20.4 140 112-267 2-147 (765)
61 PF04820 Trp_halogenase: Trypt 99.6 3E-16 6.6E-21 168.2 8.9 174 199-373 148-350 (454)
62 KOG3855 Monooxygenase involved 99.6 4.9E-14 1.1E-18 142.6 16.7 153 109-266 35-222 (481)
63 KOG2415 Electron transfer flav 99.5 3.5E-12 7.7E-17 128.9 18.4 296 109-410 75-455 (621)
64 PRK04176 ribulose-1,5-biphosph 99.4 5.2E-12 1.1E-16 125.5 16.6 215 110-378 25-255 (257)
65 TIGR00292 thiazole biosynthesi 99.4 1.2E-11 2.5E-16 122.8 16.2 140 110-266 21-175 (254)
66 COG2081 Predicted flavoprotein 99.4 7.3E-12 1.6E-16 127.6 14.5 145 110-261 3-167 (408)
67 PF01946 Thi4: Thi4 family; PD 99.3 7.2E-12 1.6E-16 118.2 12.1 129 110-264 17-168 (230)
68 COG1635 THI4 Ribulose 1,5-bisp 99.3 1.7E-11 3.7E-16 114.9 14.4 140 110-266 30-183 (262)
69 PF01266 DAO: FAD dependent ox 99.3 2E-11 4.3E-16 126.0 16.4 68 199-267 141-209 (358)
70 PF03486 HI0933_like: HI0933-l 99.3 6.2E-11 1.3E-15 125.1 15.1 139 111-261 1-166 (409)
71 COG0579 Predicted dehydrogenas 99.2 1.5E-10 3.3E-15 121.4 15.7 157 110-269 3-219 (429)
72 TIGR01377 soxA_mon sarcosine o 99.2 2.1E-10 4.5E-15 120.5 16.4 67 199-266 139-205 (380)
73 PRK11259 solA N-methyltryptoph 99.2 1.9E-10 4.1E-15 120.6 16.0 64 200-264 144-207 (376)
74 TIGR03329 Phn_aa_oxid putative 99.2 2.2E-10 4.8E-15 123.7 16.8 62 199-262 177-238 (460)
75 PRK11728 hydroxyglutarate oxid 99.2 3.6E-10 7.9E-15 119.5 16.4 69 200-269 144-212 (393)
76 PRK12266 glpD glycerol-3-phosp 99.2 3.9E-10 8.4E-15 123.1 15.7 65 200-264 150-219 (508)
77 PRK13369 glycerol-3-phosphate 99.2 4.1E-10 8.8E-15 122.9 15.7 68 199-266 149-220 (502)
78 PRK11101 glpA sn-glycerol-3-ph 99.2 6.4E-10 1.4E-14 122.4 17.1 68 199-266 143-216 (546)
79 PRK05192 tRNA uridine 5-carbox 99.2 6.5E-10 1.4E-14 121.3 16.7 144 110-261 4-157 (618)
80 PRK01747 mnmC bifunctional tRN 99.1 1.2E-09 2.6E-14 123.2 17.6 63 200-263 403-465 (662)
81 PRK12409 D-amino acid dehydrog 99.1 2.1E-09 4.6E-14 114.2 17.4 66 201-266 193-263 (410)
82 PRK05257 malate:quinone oxidor 99.1 2E-09 4.3E-14 116.7 17.3 70 199-268 177-253 (494)
83 TIGR01373 soxB sarcosine oxida 99.1 2.3E-09 4.9E-14 113.9 17.4 66 200-266 178-245 (407)
84 TIGR01320 mal_quin_oxido malat 99.1 3.4E-09 7.3E-14 114.8 17.4 71 199-269 172-248 (483)
85 PTZ00383 malate:quinone oxidor 99.1 4.9E-09 1.1E-13 113.5 17.8 68 200-268 206-280 (497)
86 TIGR03364 HpnW_proposed FAD de 99.0 2.2E-09 4.8E-14 112.2 14.0 60 199-263 139-199 (365)
87 KOG2820 FAD-dependent oxidored 99.0 3.5E-09 7.5E-14 105.3 14.1 152 109-262 6-213 (399)
88 PRK00711 D-amino acid dehydrog 99.0 5.3E-09 1.1E-13 111.3 15.8 65 200-265 196-261 (416)
89 PF01134 GIDA: Glucose inhibit 99.0 5.1E-09 1.1E-13 108.8 13.8 141 112-259 1-150 (392)
90 PF12831 FAD_oxidored: FAD dep 99.0 7.2E-10 1.6E-14 118.5 7.5 143 112-266 1-155 (428)
91 KOG2844 Dimethylglycine dehydr 99.0 1.6E-08 3.4E-13 108.2 17.0 180 199-382 181-403 (856)
92 PF13738 Pyr_redox_3: Pyridine 99.0 2.1E-09 4.5E-14 102.6 8.7 135 114-261 1-138 (203)
93 PRK13339 malate:quinone oxidor 98.9 1.2E-08 2.5E-13 110.3 15.3 70 200-269 179-255 (497)
94 PRK07804 L-aspartate oxidase; 98.9 1.9E-08 4.1E-13 110.7 16.8 155 109-263 15-212 (541)
95 TIGR01292 TRX_reduct thioredox 98.9 1.2E-08 2.7E-13 103.0 14.1 111 111-261 1-112 (300)
96 PLN02464 glycerol-3-phosphate 98.9 2.6E-08 5.6E-13 111.3 17.9 69 199-267 226-302 (627)
97 PRK06481 fumarate reductase fl 98.9 2.3E-08 5E-13 109.2 17.0 154 109-262 60-252 (506)
98 PRK08274 tricarballylate dehyd 98.9 2.5E-08 5.4E-13 107.9 16.7 154 109-262 3-193 (466)
99 COG0665 DadA Glycine/D-amino a 98.9 2.8E-08 6E-13 104.5 16.0 67 199-266 150-217 (387)
100 TIGR01813 flavo_cyto_c flavocy 98.9 2.8E-08 6E-13 106.7 16.1 151 112-262 1-193 (439)
101 PF00890 FAD_binding_2: FAD bi 98.9 3.1E-08 6.7E-13 105.5 15.6 66 204-269 140-212 (417)
102 TIGR00551 nadB L-aspartate oxi 98.9 3.9E-08 8.4E-13 107.0 15.9 153 110-263 2-191 (488)
103 TIGR01812 sdhA_frdA_Gneg succi 98.9 4.1E-08 8.9E-13 108.9 16.3 153 112-264 1-194 (566)
104 PLN02661 Putative thiazole syn 98.9 5.6E-08 1.2E-12 99.7 15.3 217 110-378 92-328 (357)
105 PRK05945 sdhA succinate dehydr 98.8 4.5E-08 9.8E-13 108.6 15.5 154 110-263 3-199 (575)
106 TIGR00136 gidA glucose-inhibit 98.8 3.9E-08 8.5E-13 107.4 14.6 142 111-261 1-154 (617)
107 PRK09231 fumarate reductase fl 98.8 5.6E-08 1.2E-12 107.9 15.7 155 110-264 4-199 (582)
108 PRK06175 L-aspartate oxidase; 98.8 7.4E-08 1.6E-12 103.2 16.0 152 110-262 4-190 (433)
109 COG0492 TrxB Thioredoxin reduc 98.8 4.6E-08 9.9E-13 99.4 13.3 112 110-262 3-116 (305)
110 PRK07121 hypothetical protein; 98.8 1.2E-07 2.7E-12 103.2 17.7 59 204-262 176-240 (492)
111 TIGR00275 flavoprotein, HI0933 98.8 3.9E-08 8.4E-13 104.3 13.1 145 114-261 1-160 (400)
112 PRK15317 alkyl hydroperoxide r 98.8 6.2E-08 1.3E-12 106.2 14.9 113 108-261 209-322 (517)
113 PLN02172 flavin-containing mon 98.8 7E-08 1.5E-12 104.0 14.9 144 110-261 10-173 (461)
114 COG0578 GlpA Glycerol-3-phosph 98.8 7.6E-08 1.7E-12 103.3 15.0 69 198-266 157-230 (532)
115 PRK06854 adenylylsulfate reduc 98.8 9.6E-08 2.1E-12 106.5 16.5 153 110-262 11-196 (608)
116 TIGR01176 fum_red_Fp fumarate 98.8 1.2E-07 2.6E-12 105.1 16.2 154 110-263 3-197 (580)
117 PRK08401 L-aspartate oxidase; 98.8 1.5E-07 3.2E-12 101.9 16.5 153 111-265 2-179 (466)
118 PRK06452 sdhA succinate dehydr 98.8 1.5E-07 3.2E-12 104.2 16.8 154 110-263 5-200 (566)
119 PTZ00139 Succinate dehydrogena 98.8 1.6E-07 3.5E-12 104.8 17.2 154 110-263 29-231 (617)
120 PRK06069 sdhA succinate dehydr 98.8 1E-07 2.2E-12 105.8 15.4 154 110-263 5-202 (577)
121 PRK09078 sdhA succinate dehydr 98.8 9E-08 1.9E-12 106.6 14.5 154 110-263 12-214 (598)
122 PLN00128 Succinate dehydrogena 98.8 2E-07 4.4E-12 104.2 17.2 154 110-263 50-252 (635)
123 PLN02815 L-aspartate oxidase 98.7 1.3E-07 2.8E-12 104.9 14.9 158 105-263 24-224 (594)
124 PRK07573 sdhA succinate dehydr 98.7 2.2E-07 4.8E-12 104.1 16.6 55 209-263 174-234 (640)
125 PRK08958 sdhA succinate dehydr 98.7 2.6E-07 5.6E-12 102.7 16.9 154 110-263 7-208 (588)
126 TIGR03140 AhpF alkyl hydropero 98.7 1.5E-07 3.3E-12 103.1 14.9 113 108-261 210-323 (515)
127 PRK07803 sdhA succinate dehydr 98.7 2.1E-07 4.7E-12 104.1 16.2 153 110-262 8-214 (626)
128 TIGR01424 gluta_reduc_2 glutat 98.7 1.9E-07 4E-12 100.6 14.8 138 110-261 2-142 (446)
129 PRK06263 sdhA succinate dehydr 98.7 2.1E-07 4.6E-12 102.6 15.6 152 110-262 7-198 (543)
130 PRK07057 sdhA succinate dehydr 98.7 3.7E-07 8E-12 101.6 17.3 154 110-263 12-213 (591)
131 TIGR03143 AhpF_homolog putativ 98.7 2.3E-07 5E-12 102.5 14.3 110 110-261 4-114 (555)
132 PRK06134 putative FAD-binding 98.7 5.8E-07 1.2E-11 99.9 17.1 60 203-262 215-279 (581)
133 PRK08275 putative oxidoreducta 98.7 5.9E-07 1.3E-11 99.3 16.9 154 110-263 9-202 (554)
134 PRK08071 L-aspartate oxidase; 98.7 3.6E-07 7.9E-12 99.9 15.1 151 110-262 3-191 (510)
135 PRK12842 putative succinate de 98.7 4.8E-07 1E-11 100.5 16.0 56 206-261 215-275 (574)
136 PRK12839 hypothetical protein; 98.6 6.6E-07 1.4E-11 99.0 16.5 60 203-262 212-277 (572)
137 PRK07395 L-aspartate oxidase; 98.6 3.5E-07 7.6E-12 100.8 14.1 154 108-262 7-198 (553)
138 PRK08205 sdhA succinate dehydr 98.6 7.7E-07 1.7E-11 99.0 16.9 153 110-263 5-208 (583)
139 PRK08641 sdhA succinate dehydr 98.6 6E-07 1.3E-11 99.9 16.0 154 110-263 3-202 (589)
140 PRK05976 dihydrolipoamide dehy 98.6 3.6E-07 7.8E-12 99.1 13.6 37 110-146 4-41 (472)
141 PRK06416 dihydrolipoamide dehy 98.6 3.1E-07 6.7E-12 99.3 12.9 37 110-146 4-41 (462)
142 PRK12845 3-ketosteroid-delta-1 98.6 2.5E-06 5.4E-11 94.3 19.3 58 206-263 218-280 (564)
143 PRK06467 dihydrolipoamide dehy 98.6 4.4E-07 9.6E-12 98.4 13.1 37 109-145 3-41 (471)
144 TIGR01421 gluta_reduc_1 glutat 98.6 4E-07 8.7E-12 98.1 12.3 37 110-146 2-39 (450)
145 PRK10262 thioredoxin reductase 98.6 9.5E-07 2.1E-11 90.8 14.6 112 109-261 5-117 (321)
146 PRK06370 mercuric reductase; V 98.6 8.3E-07 1.8E-11 96.0 14.6 38 109-146 4-42 (463)
147 PRK08626 fumarate reductase fl 98.6 8.9E-07 1.9E-11 99.5 15.2 59 205-263 158-222 (657)
148 PRK06116 glutathione reductase 98.6 6E-07 1.3E-11 96.8 13.1 36 110-145 4-40 (450)
149 PRK12835 3-ketosteroid-delta-1 98.6 9.3E-07 2E-11 98.2 15.0 37 109-145 10-47 (584)
150 PRK12837 3-ketosteroid-delta-1 98.6 8.5E-07 1.9E-11 97.1 14.5 36 109-145 6-42 (513)
151 KOG2853 Possible oxidoreductas 98.6 1.6E-06 3.5E-11 86.5 14.8 64 202-266 240-325 (509)
152 PRK05249 soluble pyridine nucl 98.5 1E-06 2.2E-11 95.3 14.5 138 110-261 5-149 (461)
153 PRK14694 putative mercuric red 98.5 1E-06 2.2E-11 95.5 14.4 38 109-146 5-43 (468)
154 PTZ00058 glutathione reductase 98.5 6.2E-07 1.3E-11 98.8 12.8 38 109-146 47-85 (561)
155 PRK07512 L-aspartate oxidase; 98.5 9E-07 1.9E-11 96.9 14.1 152 109-262 8-198 (513)
156 PRK07843 3-ketosteroid-delta-1 98.5 2.2E-06 4.7E-11 94.8 17.1 57 206-262 209-270 (557)
157 TIGR01811 sdhA_Bsu succinate d 98.5 1.1E-06 2.4E-11 97.9 14.3 30 113-142 1-31 (603)
158 PRK12843 putative FAD-binding 98.5 1.4E-06 3.1E-11 96.7 14.4 59 204-262 220-283 (578)
159 COG3380 Predicted NAD/FAD-depe 98.5 4.1E-07 8.9E-12 88.3 8.4 127 112-258 3-157 (331)
160 PRK09077 L-aspartate oxidase; 98.5 3.1E-06 6.8E-11 93.2 16.4 154 110-264 8-210 (536)
161 PRK12834 putative FAD-binding 98.5 2.4E-06 5.3E-11 94.4 15.4 33 110-142 4-37 (549)
162 PRK09897 hypothetical protein; 98.5 2.5E-06 5.4E-11 93.2 14.7 149 111-260 2-165 (534)
163 PRK12844 3-ketosteroid-delta-1 98.4 5E-06 1.1E-10 92.0 17.1 58 205-262 208-270 (557)
164 PLN02507 glutathione reductase 98.4 2.9E-06 6.4E-11 92.6 15.1 31 110-140 25-56 (499)
165 TIGR01350 lipoamide_DH dihydro 98.4 3.7E-06 8E-11 90.9 15.8 36 111-146 2-38 (461)
166 KOG1399 Flavin-containing mono 98.4 1.6E-06 3.5E-11 92.3 12.2 133 110-261 6-153 (448)
167 PLN02546 glutathione reductase 98.4 3.6E-06 7.8E-11 92.8 15.3 32 109-140 78-110 (558)
168 TIGR02053 MerA mercuric reduct 98.4 1.3E-06 2.7E-11 94.6 10.8 36 111-146 1-37 (463)
169 PF06039 Mqo: Malate:quinone o 98.4 1E-05 2.2E-10 84.9 16.7 68 199-266 175-249 (488)
170 PRK06115 dihydrolipoamide dehy 98.4 2.6E-06 5.7E-11 92.2 13.1 36 110-145 3-40 (466)
171 PRK06327 dihydrolipoamide dehy 98.4 2.9E-06 6.3E-11 92.1 13.5 31 110-140 4-35 (475)
172 PRK13748 putative mercuric red 98.4 3.3E-06 7.1E-11 93.7 13.8 37 110-146 98-135 (561)
173 PTZ00306 NADH-dependent fumara 98.4 9.2E-06 2E-10 97.0 18.2 39 108-146 407-446 (1167)
174 PRK08010 pyridine nucleotide-d 98.4 4E-06 8.6E-11 90.2 13.5 33 110-142 3-36 (441)
175 PRK07251 pyridine nucleotide-d 98.4 6.3E-06 1.4E-10 88.5 15.0 33 110-142 3-36 (438)
176 TIGR02061 aprA adenosine phosp 98.4 1.4E-05 3E-10 89.0 18.0 151 112-262 1-192 (614)
177 TIGR03378 glycerol3P_GlpB glyc 98.4 1.9E-05 4.1E-10 83.3 18.0 151 202-373 260-418 (419)
178 COG2072 TrkA Predicted flavopr 98.3 2E-06 4.3E-11 92.3 10.3 131 108-261 6-144 (443)
179 PRK07845 flavoprotein disulfid 98.3 1.2E-05 2.5E-10 87.2 16.0 138 112-261 3-151 (466)
180 TIGR02485 CobZ_N-term precorri 98.3 9.1E-06 2E-10 87.2 15.0 58 205-262 123-184 (432)
181 COG0445 GidA Flavin-dependent 98.3 1E-06 2.3E-11 93.2 7.2 137 110-260 4-157 (621)
182 PRK07818 dihydrolipoamide dehy 98.3 5.6E-06 1.2E-10 89.6 12.8 37 110-146 4-41 (466)
183 COG0029 NadB Aspartate oxidase 98.3 6.5E-06 1.4E-10 86.6 12.2 154 112-266 9-201 (518)
184 PRK13800 putative oxidoreducta 98.3 2.4E-05 5.2E-10 91.3 17.8 35 109-143 12-47 (897)
185 PRK05335 tRNA (uracil-5-)-meth 98.2 5.9E-06 1.3E-10 87.0 11.0 113 111-232 3-126 (436)
186 PF00732 GMC_oxred_N: GMC oxid 98.2 1.5E-05 3.3E-10 80.7 13.9 32 111-142 1-34 (296)
187 PF13454 NAD_binding_9: FAD-NA 98.2 7E-06 1.5E-10 75.4 10.1 42 218-259 113-155 (156)
188 PRK07233 hypothetical protein; 98.2 2.5E-05 5.4E-10 83.3 15.8 56 205-260 198-253 (434)
189 PRK06292 dihydrolipoamide dehy 98.2 1.6E-05 3.4E-10 86.0 14.1 36 110-145 3-39 (460)
190 COG1053 SdhA Succinate dehydro 98.2 5.2E-06 1.1E-10 91.2 10.4 151 110-261 6-202 (562)
191 PTZ00052 thioredoxin reductase 98.2 2.8E-06 6E-11 92.8 7.9 32 110-141 5-37 (499)
192 PF00743 FMO-like: Flavin-bind 98.2 5.4E-06 1.2E-10 90.8 10.1 130 112-261 3-150 (531)
193 PF00070 Pyr_redox: Pyridine n 98.2 2.4E-05 5.1E-10 63.2 11.2 78 113-245 2-80 (80)
194 COG3634 AhpF Alkyl hydroperoxi 98.2 2.3E-06 4.9E-11 85.6 6.0 109 110-260 211-324 (520)
195 TIGR01438 TGR thioredoxin and 98.2 1.4E-05 3E-10 87.0 12.6 32 110-141 2-34 (484)
196 PRK14727 putative mercuric red 98.2 1.8E-05 3.8E-10 86.1 13.3 37 109-145 15-53 (479)
197 PRK07846 mycothione reductase; 98.2 6E-06 1.3E-10 89.0 9.6 35 110-146 1-36 (451)
198 TIGR01423 trypano_reduc trypan 98.2 1.8E-05 4E-10 86.0 13.0 32 110-141 3-36 (486)
199 COG1249 Lpd Pyruvate/2-oxoglut 98.2 2.4E-05 5.3E-10 83.7 13.7 37 110-146 4-42 (454)
200 TIGR03197 MnmC_Cterm tRNA U-34 98.1 2.1E-05 4.6E-10 82.8 12.5 65 199-264 129-193 (381)
201 KOG2665 Predicted FAD-dependen 98.1 1.2E-05 2.5E-10 79.8 9.5 67 200-266 191-262 (453)
202 TIGR01372 soxA sarcosine oxida 98.1 2.4E-05 5.3E-10 92.1 14.0 107 110-261 163-286 (985)
203 PF07992 Pyr_redox_2: Pyridine 98.1 9.5E-06 2.1E-10 77.0 8.4 113 112-261 1-122 (201)
204 PRK11883 protoporphyrinogen ox 98.1 4.6E-05 1E-09 81.8 14.2 39 221-259 235-273 (451)
205 PTZ00153 lipoamide dehydrogena 98.1 2.2E-05 4.7E-10 88.0 11.7 37 109-145 115-154 (659)
206 TIGR03452 mycothione_red mycot 98.1 1.6E-05 3.5E-10 85.7 10.5 35 110-146 2-37 (452)
207 PRK12779 putative bifunctional 98.1 1.1E-05 2.4E-10 93.9 9.7 98 110-261 306-404 (944)
208 PRK06912 acoL dihydrolipoamide 98.1 3.8E-05 8.2E-10 83.0 13.1 35 112-146 2-37 (458)
209 PRK05329 anaerobic glycerol-3- 98.0 0.00027 5.9E-09 75.2 18.7 151 205-376 259-419 (422)
210 PRK13977 myosin-cross-reactive 98.0 0.00012 2.6E-09 79.9 15.4 57 205-261 226-293 (576)
211 PRK04965 NADH:flavorubredoxin 98.0 6.9E-05 1.5E-09 78.9 13.0 97 111-261 142-239 (377)
212 PRK12831 putative oxidoreducta 98.0 1.9E-05 4.2E-10 85.4 8.9 33 110-142 140-173 (464)
213 PRK12416 protoporphyrinogen ox 98.0 6.9E-05 1.5E-09 81.1 12.7 57 207-267 228-284 (463)
214 PF13434 K_oxygenase: L-lysine 97.9 2E-05 4.3E-10 81.7 7.7 139 110-258 2-156 (341)
215 PRK09754 phenylpropionate diox 97.9 0.0001 2.3E-09 78.0 13.2 95 111-260 145-240 (396)
216 KOG2311 NAD/FAD-utilizing prot 97.9 2.4E-05 5.3E-10 81.4 7.7 138 108-260 26-185 (679)
217 PRK09564 coenzyme A disulfide 97.9 7E-05 1.5E-09 80.5 11.7 108 112-261 2-115 (444)
218 COG2509 Uncharacterized FAD-de 97.9 0.00013 2.8E-09 76.1 12.8 59 204-262 172-231 (486)
219 COG1233 Phytoene dehydrogenase 97.9 1.1E-05 2.3E-10 87.9 5.0 55 205-259 224-279 (487)
220 PF13450 NAD_binding_8: NAD(P) 97.9 1.6E-05 3.5E-10 62.2 4.5 31 115-145 1-32 (68)
221 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 6.7E-05 1.5E-09 79.5 10.5 32 111-142 1-33 (433)
222 PLN02568 polyamine oxidase 97.9 0.00016 3.5E-09 79.5 13.9 51 206-258 243-293 (539)
223 KOG0042 Glycerol-3-phosphate d 97.9 1.1E-05 2.3E-10 85.2 4.1 66 201-266 220-292 (680)
224 COG1231 Monoamine oxidase [Ami 97.9 0.0001 2.2E-09 77.2 11.0 50 209-258 209-259 (450)
225 TIGR03377 glycerol3P_GlpA glyc 97.8 0.00029 6.3E-09 77.3 14.1 68 199-266 122-195 (516)
226 PRK09853 putative selenate red 97.8 0.00011 2.4E-09 85.1 10.9 33 110-142 539-572 (1019)
227 COG1252 Ndh NADH dehydrogenase 97.8 0.00064 1.4E-08 71.4 15.6 114 209-379 213-333 (405)
228 PRK12778 putative bifunctional 97.8 4.9E-05 1.1E-09 87.2 8.0 33 110-142 431-464 (752)
229 PRK05249 soluble pyridine nucl 97.8 0.00029 6.3E-09 76.2 13.4 95 111-260 176-271 (461)
230 KOG1335 Dihydrolipoamide dehyd 97.8 0.00015 3.2E-09 73.9 9.9 136 109-259 38-183 (506)
231 PRK09754 phenylpropionate diox 97.7 0.00023 5E-09 75.4 12.0 106 111-261 4-112 (396)
232 COG1232 HemY Protoporphyrinoge 97.7 0.00032 7E-09 74.6 12.8 50 206-258 216-265 (444)
233 TIGR01350 lipoamide_DH dihydro 97.7 0.00033 7.1E-09 75.7 13.2 95 111-260 171-268 (461)
234 PRK12775 putative trifunctiona 97.7 6.9E-05 1.5E-09 88.1 8.0 33 110-142 430-463 (1006)
235 PRK06416 dihydrolipoamide dehy 97.7 0.00057 1.2E-08 73.9 13.8 94 111-259 173-270 (462)
236 COG3573 Predicted oxidoreducta 97.7 0.00044 9.6E-09 69.3 11.4 32 110-141 5-37 (552)
237 PTZ00363 rab-GDP dissociation 97.6 4.7E-05 1E-09 81.6 4.8 56 205-260 232-289 (443)
238 TIGR03169 Nterm_to_SelD pyridi 97.6 0.00022 4.9E-09 74.5 9.7 103 112-261 1-107 (364)
239 TIGR02730 carot_isom carotene 97.6 5.3E-05 1.2E-09 82.7 5.1 60 205-264 229-289 (493)
240 PRK06116 glutathione reductase 97.6 0.00061 1.3E-08 73.5 12.9 94 111-259 168-263 (450)
241 PRK11749 dihydropyrimidine deh 97.6 0.00024 5.2E-09 76.8 9.6 33 110-142 140-173 (457)
242 PTZ00318 NADH dehydrogenase-li 97.6 0.0038 8.3E-08 66.8 18.2 89 112-259 175-278 (424)
243 PTZ00318 NADH dehydrogenase-li 97.6 0.00039 8.5E-09 74.4 10.5 107 110-261 10-125 (424)
244 TIGR01424 gluta_reduc_2 glutat 97.5 0.00097 2.1E-08 71.9 13.3 93 112-259 168-261 (446)
245 PRK07251 pyridine nucleotide-d 97.5 0.00098 2.1E-08 71.6 13.4 93 112-260 159-252 (438)
246 KOG4254 Phytoene desaturase [C 97.5 0.00077 1.7E-08 70.2 11.6 58 206-263 265-323 (561)
247 PLN02507 glutathione reductase 97.5 0.001 2.3E-08 72.7 13.5 93 112-259 205-298 (499)
248 PRK13512 coenzyme A disulfide 97.5 0.00063 1.4E-08 73.2 11.3 108 112-261 3-117 (438)
249 TIGR02374 nitri_red_nirB nitri 97.5 0.00042 9.1E-09 79.8 10.3 104 113-261 1-108 (785)
250 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.0015 3.1E-08 70.2 13.4 93 112-259 175-270 (454)
251 TIGR01421 gluta_reduc_1 glutat 97.5 0.0015 3.2E-08 70.6 13.4 94 111-259 167-263 (450)
252 PRK07818 dihydrolipoamide dehy 97.5 0.0015 3.2E-08 70.9 13.5 94 111-259 173-271 (466)
253 TIGR02053 MerA mercuric reduct 97.5 0.0013 2.8E-08 71.2 12.9 94 111-259 167-264 (463)
254 PRK07846 mycothione reductase; 97.4 0.0013 2.7E-08 71.1 12.7 93 111-259 167-260 (451)
255 PRK06327 dihydrolipoamide dehy 97.4 0.0015 3.3E-08 71.0 13.4 94 111-259 184-282 (475)
256 PRK07845 flavoprotein disulfid 97.4 0.0014 3.1E-08 71.0 13.0 93 112-259 179-272 (466)
257 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00013 2.9E-09 79.5 5.1 55 205-259 232-292 (492)
258 PRK06912 acoL dihydrolipoamide 97.4 0.0016 3.6E-08 70.3 13.4 93 112-260 172-267 (458)
259 PRK04965 NADH:flavorubredoxin 97.4 0.0012 2.6E-08 69.5 12.0 105 111-261 3-111 (377)
260 PRK06115 dihydrolipoamide dehy 97.4 0.0019 4.1E-08 70.1 13.6 94 111-259 175-274 (466)
261 KOG2852 Possible oxidoreductas 97.4 0.00046 1E-08 67.9 7.7 66 200-266 142-213 (380)
262 PLN02576 protoporphyrinogen ox 97.4 0.0002 4.4E-09 78.1 5.7 40 107-146 9-51 (496)
263 PRK06370 mercuric reductase; V 97.4 0.0023 4.9E-08 69.3 13.7 94 111-259 172-269 (463)
264 KOG0404 Thioredoxin reductase 97.4 0.00067 1.5E-08 64.5 8.0 121 111-270 9-131 (322)
265 TIGR02374 nitri_red_nirB nitri 97.4 0.00086 1.9E-08 77.3 10.7 97 111-261 141-238 (785)
266 PRK14694 putative mercuric red 97.3 0.0023 4.9E-08 69.5 13.2 92 112-260 180-272 (468)
267 PRK12770 putative glutamate sy 97.3 0.00088 1.9E-08 69.8 9.6 33 111-143 19-52 (352)
268 PRK05976 dihydrolipoamide dehy 97.3 0.0026 5.5E-08 69.1 13.4 95 111-260 181-280 (472)
269 PRK14989 nitrite reductase sub 97.3 0.0011 2.4E-08 76.7 11.1 104 112-261 5-113 (847)
270 PRK14727 putative mercuric red 97.3 0.0026 5.5E-08 69.3 13.3 92 112-260 190-282 (479)
271 PTZ00052 thioredoxin reductase 97.3 0.0023 5E-08 70.0 12.9 92 112-259 184-276 (499)
272 PRK07208 hypothetical protein; 97.3 0.00026 5.7E-09 76.9 5.5 56 205-260 218-279 (479)
273 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00025 5.4E-09 74.4 5.1 32 111-142 2-34 (377)
274 PRK08010 pyridine nucleotide-d 97.3 0.0032 6.9E-08 67.7 13.5 93 112-260 160-253 (441)
275 TIGR03385 CoA_CoA_reduc CoA-di 97.3 0.0023 5.1E-08 68.4 12.3 94 111-260 138-232 (427)
276 KOG0029 Amine oxidase [Seconda 97.3 0.0003 6.5E-09 76.4 5.3 34 109-142 14-48 (501)
277 TIGR02734 crtI_fam phytoene de 97.3 0.00022 4.8E-09 78.0 4.4 59 205-263 219-278 (502)
278 PRK09564 coenzyme A disulfide 97.3 0.0028 6.1E-08 68.1 12.7 95 111-260 150-245 (444)
279 PRK14989 nitrite reductase sub 97.2 0.0016 3.4E-08 75.4 11.0 97 112-262 147-246 (847)
280 COG2907 Predicted NAD/FAD-bind 97.2 0.0016 3.5E-08 65.8 9.5 42 219-260 231-272 (447)
281 PRK02106 choline dehydrogenase 97.2 0.0003 6.5E-09 78.1 4.9 34 109-142 4-39 (560)
282 TIGR01423 trypano_reduc trypan 97.2 0.0036 7.9E-08 68.2 12.7 94 111-259 188-286 (486)
283 PRK13748 putative mercuric red 97.2 0.004 8.6E-08 69.1 13.3 91 112-259 272-363 (561)
284 TIGR01438 TGR thioredoxin and 97.2 0.0038 8.3E-08 68.0 12.9 92 112-259 182-277 (484)
285 TIGR03452 mycothione_red mycot 97.2 0.0035 7.5E-08 67.7 12.4 93 111-259 170-263 (452)
286 COG0446 HcaD Uncharacterized N 97.2 0.003 6.6E-08 66.5 11.7 97 111-261 137-237 (415)
287 TIGR00562 proto_IX_ox protopor 97.2 0.00043 9.4E-09 74.7 5.0 41 220-260 238-278 (462)
288 TIGR03315 Se_ygfK putative sel 97.1 0.00056 1.2E-08 79.6 5.7 34 110-143 537-571 (1012)
289 COG0562 Glf UDP-galactopyranos 97.1 0.00059 1.3E-08 68.3 4.9 36 110-145 1-37 (374)
290 TIGR02462 pyranose_ox pyranose 97.1 0.00048 1.1E-08 75.4 4.4 33 111-143 1-34 (544)
291 COG4529 Uncharacterized protei 97.1 0.0071 1.5E-07 64.1 12.7 41 221-261 122-164 (474)
292 PRK13512 coenzyme A disulfide 97.1 0.0051 1.1E-07 66.2 12.0 91 111-260 149-240 (438)
293 PLN02268 probable polyamine ox 97.0 0.00064 1.4E-08 72.9 5.0 41 218-258 209-249 (435)
294 PRK06467 dihydrolipoamide dehy 97.0 0.0061 1.3E-07 66.2 12.6 92 112-259 176-272 (471)
295 KOG2404 Fumarate reductase, fl 97.0 0.0082 1.8E-07 60.2 12.0 32 112-143 11-43 (477)
296 COG3349 Uncharacterized conser 97.0 0.00067 1.5E-08 72.3 4.7 34 112-145 2-36 (485)
297 PTZ00058 glutathione reductase 97.0 0.0075 1.6E-07 66.8 13.1 94 111-259 238-334 (561)
298 PLN02852 ferredoxin-NADP+ redu 97.0 0.0012 2.5E-08 71.7 6.4 36 110-145 26-64 (491)
299 TIGR02352 thiamin_ThiO glycine 97.0 0.0026 5.6E-08 65.3 8.7 66 199-265 131-197 (337)
300 TIGR02731 phytoene_desat phyto 97.0 0.00085 1.8E-08 72.4 5.0 63 205-269 213-282 (453)
301 KOG4716 Thioredoxin reductase 96.9 0.0062 1.3E-07 61.4 10.4 43 110-152 19-62 (503)
302 KOG2960 Protein involved in th 96.9 0.0015 3.4E-08 61.5 5.5 37 110-146 76-115 (328)
303 TIGR01316 gltA glutamate synth 96.9 0.0025 5.3E-08 68.8 7.5 65 59-142 101-166 (449)
304 COG1148 HdrA Heterodisulfide r 96.9 0.0012 2.5E-08 69.4 4.6 35 111-145 125-160 (622)
305 COG2303 BetA Choline dehydroge 96.8 0.0011 2.3E-08 73.2 4.2 34 108-141 5-39 (542)
306 PRK05675 sdhA succinate dehydr 96.8 0.011 2.3E-07 65.9 11.7 59 205-263 126-191 (570)
307 PLN02676 polyamine oxidase 96.7 0.0018 4E-08 70.5 5.5 55 205-259 224-284 (487)
308 COG3075 GlpB Anaerobic glycero 96.7 0.0016 3.4E-08 65.5 4.4 32 110-141 2-34 (421)
309 PRK12810 gltD glutamate syntha 96.7 0.0021 4.5E-08 69.8 5.7 34 110-143 143-177 (471)
310 PRK06292 dihydrolipoamide dehy 96.7 0.023 5E-07 61.4 13.4 93 111-259 170-266 (460)
311 COG3486 IucD Lysine/ornithine 96.7 0.0077 1.7E-07 62.4 8.8 137 109-261 4-157 (436)
312 PRK12769 putative oxidoreducta 96.7 0.0021 4.5E-08 72.7 5.3 34 110-143 327-361 (654)
313 PRK06567 putative bifunctional 96.7 0.002 4.3E-08 74.2 5.0 33 110-142 383-416 (1028)
314 PLN02785 Protein HOTHEAD 96.6 0.0018 4E-08 72.0 4.7 34 108-142 53-87 (587)
315 PLN02546 glutathione reductase 96.6 0.021 4.5E-07 63.3 12.8 93 112-259 254-348 (558)
316 TIGR02732 zeta_caro_desat caro 96.6 0.0022 4.7E-08 69.7 4.9 54 207-260 221-283 (474)
317 PLN02529 lysine-specific histo 96.6 0.003 6.4E-08 71.7 5.6 34 109-142 159-193 (738)
318 PLN02328 lysine-specific histo 96.5 0.0031 6.6E-08 72.0 5.7 34 109-142 237-271 (808)
319 COG1252 Ndh NADH dehydrogenase 96.5 0.01 2.2E-07 62.5 9.1 104 111-261 4-111 (405)
320 TIGR01318 gltD_gamma_fam gluta 96.5 0.0054 1.2E-07 66.5 7.2 34 110-143 141-175 (467)
321 PTZ00153 lipoamide dehydrogena 96.5 0.026 5.6E-07 63.6 12.7 93 112-259 314-425 (659)
322 TIGR01810 betA choline dehydro 96.5 0.0019 4.1E-08 71.2 3.7 31 112-142 1-33 (532)
323 PLN02612 phytoene desaturase 96.5 0.0034 7.3E-08 69.8 5.6 62 206-269 309-372 (567)
324 TIGR03862 flavo_PP4765 unchara 96.5 0.03 6.5E-07 58.8 12.1 58 202-261 83-141 (376)
325 KOG0405 Pyridine nucleotide-di 96.5 0.025 5.5E-07 57.4 10.8 37 109-145 19-57 (478)
326 PF00996 GDI: GDP dissociation 96.4 0.0041 8.8E-08 66.3 5.2 53 205-257 232-285 (438)
327 KOG1336 Monodehydroascorbate/f 96.4 0.013 2.9E-07 61.8 8.6 96 111-260 214-312 (478)
328 PRK12814 putative NADPH-depend 96.3 0.0046 9.9E-08 69.9 5.5 34 110-143 193-227 (652)
329 PLN02487 zeta-carotene desatur 96.3 0.0052 1.1E-07 68.0 5.6 55 206-260 296-359 (569)
330 TIGR03140 AhpF alkyl hydropero 96.3 0.029 6.3E-07 61.7 11.3 88 111-259 353-448 (515)
331 PRK10262 thioredoxin reductase 96.2 0.04 8.8E-07 56.5 11.1 92 111-259 147-246 (321)
332 PRK12809 putative oxidoreducta 96.1 0.0079 1.7E-07 67.9 5.7 34 110-143 310-344 (639)
333 TIGR01292 TRX_reduct thioredox 96.0 0.062 1.4E-06 53.9 11.5 88 111-259 142-236 (300)
334 COG0493 GltD NADPH-dependent g 96.0 0.0091 2E-07 64.2 5.5 54 111-164 124-187 (457)
335 PTZ00188 adrenodoxin reductase 96.0 0.0096 2.1E-07 64.2 5.4 36 110-145 39-76 (506)
336 PRK13984 putative oxidoreducta 95.9 0.017 3.7E-07 64.8 7.5 36 109-144 282-318 (604)
337 PRK12771 putative glutamate sy 95.9 0.0082 1.8E-07 66.7 4.9 34 110-143 137-171 (564)
338 TIGR01317 GOGAT_sm_gam glutama 95.9 0.011 2.5E-07 64.3 5.5 33 110-142 143-176 (485)
339 TIGR01316 gltA glutamate synth 95.8 0.082 1.8E-06 57.1 12.0 31 111-141 273-304 (449)
340 PRK11749 dihydropyrimidine deh 95.8 0.086 1.9E-06 57.0 12.1 31 111-141 274-306 (457)
341 TIGR03169 Nterm_to_SelD pyridi 95.8 0.093 2E-06 54.7 11.8 47 210-260 196-242 (364)
342 PF13434 K_oxygenase: L-lysine 95.7 0.2 4.4E-06 52.0 14.0 130 110-258 190-338 (341)
343 COG1206 Gid NAD(FAD)-utilizing 95.7 0.026 5.6E-07 57.0 6.8 35 111-145 4-39 (439)
344 PRK12770 putative glutamate sy 95.7 0.087 1.9E-06 54.9 11.2 30 112-141 174-205 (352)
345 KOG3923 D-aspartate oxidase [A 95.6 0.059 1.3E-06 53.7 8.9 53 200-264 146-198 (342)
346 PLN03000 amine oxidase 95.6 0.015 3.3E-07 66.6 5.5 33 110-142 184-217 (881)
347 PLN02976 amine oxidase 95.6 0.015 3.3E-07 69.2 5.4 34 109-142 692-726 (1713)
348 PRK12831 putative oxidoreducta 95.5 0.14 3E-06 55.6 12.0 31 111-141 282-313 (464)
349 KOG1238 Glucose dehydrogenase/ 95.4 0.013 2.7E-07 64.3 3.8 35 107-141 54-90 (623)
350 KOG1346 Programmed cell death 95.3 0.056 1.2E-06 56.1 7.6 56 205-260 393-448 (659)
351 PRK15317 alkyl hydroperoxide r 95.2 0.14 3.1E-06 56.3 11.3 87 112-259 353-447 (517)
352 PRK12810 gltD glutamate syntha 95.2 0.17 3.6E-06 55.0 11.5 30 112-141 283-314 (471)
353 KOG3851 Sulfide:quinone oxidor 95.0 0.074 1.6E-06 53.5 7.4 35 107-141 36-73 (446)
354 PF06100 Strep_67kDa_ant: Stre 94.9 0.39 8.6E-06 51.5 12.9 34 111-144 3-41 (500)
355 KOG1276 Protoporphyrinogen oxi 94.7 0.036 7.9E-07 57.8 4.6 33 110-142 11-46 (491)
356 COG1251 NirB NAD(P)H-nitrite r 94.6 0.084 1.8E-06 58.7 7.3 95 113-261 148-243 (793)
357 KOG4405 GDP dissociation inhib 94.4 0.038 8.3E-07 57.1 3.9 39 108-146 6-45 (547)
358 TIGR01372 soxA sarcosine oxida 94.4 0.3 6.4E-06 58.1 11.9 89 111-262 318-412 (985)
359 PRK12778 putative bifunctional 94.2 0.41 8.9E-06 55.2 12.1 31 111-141 571-603 (752)
360 TIGR02730 carot_isom carotene 94.1 0.19 4.2E-06 54.8 8.8 34 111-144 1-35 (493)
361 PF03721 UDPG_MGDP_dh_N: UDP-g 93.9 0.061 1.3E-06 50.8 4.0 30 112-141 2-32 (185)
362 PRK12814 putative NADPH-depend 93.6 0.66 1.4E-05 52.6 12.2 31 111-141 324-356 (652)
363 KOG1800 Ferredoxin/adrenodoxin 93.5 0.093 2E-06 54.0 4.6 36 110-145 20-58 (468)
364 PF02737 3HCDH_N: 3-hydroxyacy 93.1 0.12 2.7E-06 48.5 4.6 29 113-141 2-31 (180)
365 KOG1335 Dihydrolipoamide dehyd 93.1 0.46 9.9E-06 49.2 8.7 95 111-260 212-313 (506)
366 TIGR01318 gltD_gamma_fam gluta 92.9 1.1 2.3E-05 48.8 12.0 31 111-141 283-315 (467)
367 KOG0399 Glutamate synthase [Am 92.7 0.13 2.8E-06 59.4 4.6 34 110-143 1785-1819(2142)
368 PRK12779 putative bifunctional 92.7 0.79 1.7E-05 54.1 11.4 31 111-141 448-479 (944)
369 TIGR02734 crtI_fam phytoene de 92.7 0.46 1E-05 51.9 9.1 32 113-144 1-33 (502)
370 TIGR03143 AhpF_homolog putativ 92.7 0.85 1.8E-05 50.7 11.2 31 111-141 144-175 (555)
371 COG5044 MRS6 RAB proteins gera 92.5 0.17 3.7E-06 51.9 4.8 36 110-145 6-42 (434)
372 PRK02705 murD UDP-N-acetylmura 92.3 0.14 3.1E-06 55.2 4.4 32 112-143 2-34 (459)
373 PF01210 NAD_Gly3P_dh_N: NAD-d 92.3 0.17 3.6E-06 46.4 4.2 29 113-141 2-31 (157)
374 KOG0685 Flavin-containing amin 92.3 0.19 4.1E-06 53.4 4.9 37 221-257 245-282 (498)
375 PRK12769 putative oxidoreducta 92.2 1.3 2.8E-05 50.3 12.0 31 111-141 469-501 (654)
376 PRK04148 hypothetical protein; 92.1 0.41 8.8E-06 42.6 6.1 30 111-141 18-48 (134)
377 PF02558 ApbA: Ketopantoate re 91.9 0.22 4.8E-06 44.9 4.5 29 113-141 1-30 (151)
378 COG0569 TrkA K+ transport syst 91.6 0.22 4.7E-06 48.6 4.3 31 112-142 2-33 (225)
379 PRK06129 3-hydroxyacyl-CoA deh 91.3 0.23 5E-06 50.8 4.4 30 112-141 4-34 (308)
380 KOG1439 RAB proteins geranylge 90.8 0.12 2.6E-06 53.6 1.6 35 109-143 3-38 (440)
381 PLN02612 phytoene desaturase 90.7 0.87 1.9E-05 50.7 8.5 33 110-142 93-126 (567)
382 PRK01438 murD UDP-N-acetylmura 90.7 0.26 5.7E-06 53.6 4.4 31 111-141 17-48 (480)
383 PRK09853 putative selenate red 90.3 2.2 4.7E-05 50.4 11.5 31 111-141 669-702 (1019)
384 TIGR03315 Se_ygfK putative sel 90.3 2.4 5.2E-05 50.1 11.8 31 111-141 667-700 (1012)
385 KOG2495 NADH-dehydrogenase (ub 90.0 1.5 3.3E-05 46.1 8.8 52 207-260 275-328 (491)
386 PF02254 TrkA_N: TrkA-N domain 89.6 0.52 1.1E-05 40.3 4.5 29 113-141 1-30 (116)
387 PF01593 Amino_oxidase: Flavin 89.6 0.57 1.2E-05 48.9 5.7 50 211-260 215-264 (450)
388 COG1233 Phytoene dehydrogenase 89.6 0.88 1.9E-05 49.7 7.2 37 110-146 3-40 (487)
389 PRK08293 3-hydroxybutyryl-CoA 89.5 0.42 9E-06 48.3 4.4 30 112-141 5-35 (287)
390 PRK09260 3-hydroxybutyryl-CoA 89.5 0.42 9.2E-06 48.3 4.5 30 112-141 3-33 (288)
391 PF01593 Amino_oxidase: Flavin 89.5 0.35 7.6E-06 50.5 4.0 24 119-142 1-24 (450)
392 PF00670 AdoHcyase_NAD: S-aden 89.4 0.44 9.6E-06 43.7 4.0 32 112-143 25-57 (162)
393 PLN02676 polyamine oxidase 89.3 0.91 2E-05 49.6 7.1 33 110-142 26-60 (487)
394 PRK07066 3-hydroxybutyryl-CoA 89.2 0.46 9.9E-06 48.9 4.4 31 112-142 9-40 (321)
395 PRK07819 3-hydroxybutyryl-CoA 89.1 0.46 1E-05 48.1 4.3 31 112-142 7-38 (286)
396 TIGR03467 HpnE squalene-associ 89.0 0.97 2.1E-05 47.6 7.0 60 208-269 200-260 (419)
397 TIGR02354 thiF_fam2 thiamine b 89.0 0.56 1.2E-05 44.8 4.6 34 110-143 21-56 (200)
398 TIGR01816 sdhA_forward succina 88.8 1.7 3.6E-05 48.5 8.9 59 205-263 119-183 (565)
399 PTZ00363 rab-GDP dissociation 88.3 1.6 3.6E-05 46.9 8.1 36 108-143 2-38 (443)
400 PRK06035 3-hydroxyacyl-CoA deh 88.1 0.6 1.3E-05 47.3 4.4 30 112-141 5-35 (291)
401 PRK07530 3-hydroxybutyryl-CoA 88.1 0.6 1.3E-05 47.3 4.4 30 112-141 6-36 (292)
402 COG1004 Ugd Predicted UDP-gluc 87.9 0.59 1.3E-05 48.8 4.1 30 112-141 2-32 (414)
403 PRK13984 putative oxidoreducta 87.7 4.9 0.00011 45.1 11.8 37 336-378 566-602 (604)
404 PRK05708 2-dehydropantoate 2-r 87.6 0.65 1.4E-05 47.4 4.3 31 111-141 3-34 (305)
405 PRK05808 3-hydroxybutyryl-CoA 87.4 0.71 1.5E-05 46.5 4.4 30 112-141 5-35 (282)
406 PRK12921 2-dehydropantoate 2-r 87.3 0.69 1.5E-05 46.9 4.3 29 112-140 2-31 (305)
407 PRK11064 wecC UDP-N-acetyl-D-m 87.2 0.65 1.4E-05 49.6 4.2 31 111-141 4-35 (415)
408 PRK12809 putative oxidoreducta 87.2 5.5 0.00012 45.1 11.8 31 111-141 452-484 (639)
409 PRK12775 putative trifunctiona 87.2 5.1 0.00011 47.8 12.0 31 111-141 572-604 (1006)
410 COG1251 NirB NAD(P)H-nitrite r 87.1 4.2 9.1E-05 45.8 10.3 47 215-263 69-115 (793)
411 PF00899 ThiF: ThiF family; I 87.0 0.79 1.7E-05 40.6 4.0 34 111-144 3-38 (135)
412 PRK14106 murD UDP-N-acetylmura 87.0 0.71 1.5E-05 49.7 4.4 31 111-141 6-37 (450)
413 PRK06249 2-dehydropantoate 2-r 86.9 0.84 1.8E-05 46.7 4.7 31 111-141 6-37 (313)
414 TIGR02733 desat_CrtD C-3',4' d 86.8 2.4 5.2E-05 46.2 8.5 34 111-144 2-36 (492)
415 PRK12475 thiamine/molybdopteri 86.6 0.99 2.1E-05 46.8 5.0 34 111-144 25-60 (338)
416 PRK06522 2-dehydropantoate 2-r 86.4 0.84 1.8E-05 46.2 4.4 30 112-141 2-32 (304)
417 TIGR02731 phytoene_desat phyto 86.2 2.1 4.6E-05 46.0 7.7 31 112-142 1-32 (453)
418 TIGR03026 NDP-sugDHase nucleot 86.2 0.75 1.6E-05 49.0 4.1 30 112-141 2-32 (411)
419 PRK08229 2-dehydropantoate 2-r 86.1 0.85 1.9E-05 47.1 4.3 30 112-141 4-34 (341)
420 cd01483 E1_enzyme_family Super 86.0 1.3 2.7E-05 39.7 4.8 32 113-144 2-35 (143)
421 TIGR00518 alaDH alanine dehydr 85.6 0.95 2.1E-05 47.6 4.4 32 110-141 167-199 (370)
422 TIGR02356 adenyl_thiF thiazole 85.6 1.2 2.6E-05 42.5 4.7 35 110-144 21-57 (202)
423 PF03446 NAD_binding_2: NAD bi 85.5 1.1 2.5E-05 41.1 4.4 30 112-141 3-33 (163)
424 KOG1336 Monodehydroascorbate/f 85.5 4.6 0.0001 43.1 9.3 43 215-259 137-179 (478)
425 cd00401 AdoHcyase S-adenosyl-L 85.4 0.97 2.1E-05 48.1 4.3 31 111-141 203-234 (413)
426 PRK15116 sulfur acceptor prote 85.3 1.2 2.7E-05 44.4 4.8 35 110-144 30-66 (268)
427 COG0446 HcaD Uncharacterized N 84.8 5.8 0.00013 41.4 10.0 43 217-262 65-107 (415)
428 PF01262 AlaDh_PNT_C: Alanine 84.8 1.3 2.8E-05 41.0 4.4 32 110-141 20-52 (168)
429 PLN02545 3-hydroxybutyryl-CoA 84.7 1.2 2.5E-05 45.2 4.4 30 112-141 6-36 (295)
430 cd01487 E1_ThiF_like E1_ThiF_l 84.7 1.3 2.9E-05 41.2 4.5 31 113-143 2-34 (174)
431 PRK06130 3-hydroxybutyryl-CoA 84.5 1.2 2.5E-05 45.5 4.4 30 112-141 6-36 (311)
432 TIGR02355 moeB molybdopterin s 84.5 1.5 3.3E-05 43.1 5.0 35 110-144 24-60 (240)
433 PRK07688 thiamine/molybdopteri 84.3 1.3 2.9E-05 45.9 4.7 34 110-143 24-59 (339)
434 PLN02268 probable polyamine ox 83.9 2.1 4.5E-05 45.8 6.1 31 112-142 2-33 (435)
435 PF13738 Pyr_redox_3: Pyridine 83.8 1.1 2.4E-05 42.2 3.5 32 111-142 168-200 (203)
436 PF01488 Shikimate_DH: Shikima 83.6 1.8 3.9E-05 38.4 4.6 32 110-141 12-45 (135)
437 PRK07417 arogenate dehydrogena 83.5 1.3 2.9E-05 44.4 4.2 30 112-141 2-32 (279)
438 TIGR00936 ahcY adenosylhomocys 83.4 1.3 2.9E-05 46.9 4.3 32 111-142 196-228 (406)
439 TIGR00562 proto_IX_ox protopor 83.2 3.2 6.8E-05 44.7 7.3 33 110-142 2-39 (462)
440 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.0 1.4 3E-05 48.3 4.4 62 111-173 6-68 (503)
441 cd01075 NAD_bind_Leu_Phe_Val_D 82.7 1.7 3.8E-05 41.4 4.5 31 111-141 29-60 (200)
442 PRK00094 gpsA NAD(P)H-dependen 82.7 1.5 3.3E-05 44.8 4.4 30 112-141 3-33 (325)
443 TIGR01763 MalateDH_bact malate 82.6 1.5 3.3E-05 44.7 4.3 30 112-141 3-34 (305)
444 PRK15057 UDP-glucose 6-dehydro 82.6 1.4 3.1E-05 46.6 4.2 29 112-141 2-31 (388)
445 cd05292 LDH_2 A subgroup of L- 82.6 1.5 3.3E-05 44.8 4.3 30 112-141 2-34 (308)
446 PRK14618 NAD(P)H-dependent gly 82.5 1.6 3.4E-05 45.0 4.4 31 111-141 5-36 (328)
447 PF13478 XdhC_C: XdhC Rossmann 82.5 1.3 2.9E-05 39.5 3.3 30 113-142 1-31 (136)
448 TIGR01470 cysG_Nterm siroheme 82.4 1.8 4E-05 41.5 4.5 30 112-141 11-41 (205)
449 PRK14620 NAD(P)H-dependent gly 82.4 1.6 3.4E-05 45.0 4.3 30 112-141 2-32 (326)
450 COG0492 TrxB Thioredoxin reduc 82.2 15 0.00033 37.5 11.3 31 111-141 144-175 (305)
451 PRK05690 molybdopterin biosynt 82.1 1.9 4.1E-05 42.6 4.6 34 110-143 32-67 (245)
452 PRK06719 precorrin-2 dehydroge 81.9 2 4.4E-05 39.3 4.4 31 111-141 14-45 (157)
453 cd01080 NAD_bind_m-THF_DH_Cycl 81.8 2.1 4.5E-05 39.8 4.4 32 110-141 44-77 (168)
454 PRK06718 precorrin-2 dehydroge 81.7 2 4.4E-05 41.0 4.5 31 111-141 11-42 (202)
455 PRK08644 thiamine biosynthesis 81.6 2.2 4.7E-05 41.2 4.7 34 110-143 28-63 (212)
456 PRK09424 pntA NAD(P) transhydr 81.5 1.7 3.7E-05 47.5 4.4 32 110-141 165-197 (509)
457 PRK12771 putative glutamate sy 81.3 15 0.00032 40.9 11.9 38 338-380 409-446 (564)
458 COG1087 GalE UDP-glucose 4-epi 81.3 3.3 7.3E-05 41.8 5.9 29 113-141 3-33 (329)
459 COG0771 MurD UDP-N-acetylmuram 81.0 1.7 3.7E-05 46.6 4.0 34 111-144 8-42 (448)
460 PTZ00142 6-phosphogluconate de 81.0 1.8 3.9E-05 47.0 4.3 31 111-141 2-33 (470)
461 PRK08268 3-hydroxy-acyl-CoA de 80.9 1.8 4E-05 47.4 4.4 63 112-175 9-72 (507)
462 PLN02353 probable UDP-glucose 80.9 1.9 4E-05 46.9 4.4 30 112-141 3-35 (473)
463 cd00757 ThiF_MoeB_HesA_family 80.8 2.3 5E-05 41.4 4.6 35 110-144 21-57 (228)
464 PRK14619 NAD(P)H-dependent gly 80.7 2.3 5.1E-05 43.4 4.9 32 111-142 5-37 (308)
465 TIGR01505 tartro_sem_red 2-hyd 80.7 2 4.3E-05 43.4 4.3 29 113-141 2-31 (291)
466 PF00743 FMO-like: Flavin-bind 80.7 5.7 0.00012 43.9 8.1 31 111-141 184-215 (531)
467 PRK02472 murD UDP-N-acetylmura 80.6 1.9 4.1E-05 46.4 4.4 31 112-142 7-38 (447)
468 PRK11730 fadB multifunctional 80.6 1.8 3.8E-05 49.7 4.3 31 111-141 314-345 (715)
469 PRK10669 putative cation:proto 80.5 2.3 5E-05 47.3 5.1 32 110-141 417-449 (558)
470 PRK08328 hypothetical protein; 80.5 2.6 5.7E-05 41.2 4.9 34 110-143 27-62 (231)
471 KOG2018 Predicted dinucleotide 80.5 7.8 0.00017 39.2 8.1 50 112-165 76-127 (430)
472 TIGR02437 FadB fatty oxidation 80.3 1.9 4E-05 49.5 4.3 31 111-141 314-345 (714)
473 PRK01710 murD UDP-N-acetylmura 80.3 2 4.3E-05 46.5 4.4 31 112-142 16-47 (458)
474 PRK07531 bifunctional 3-hydrox 80.2 2 4.3E-05 47.1 4.4 30 112-141 6-36 (495)
475 PF13241 NAD_binding_7: Putati 80.2 1.5 3.3E-05 36.9 2.8 32 110-141 7-39 (103)
476 PRK03369 murD UDP-N-acetylmura 80.0 2.1 4.5E-05 46.8 4.4 30 112-141 14-44 (488)
477 PRK05476 S-adenosyl-L-homocyst 79.9 2.2 4.7E-05 45.6 4.4 32 111-142 213-245 (425)
478 PRK03803 murD UDP-N-acetylmura 79.7 2.1 4.5E-05 46.2 4.3 32 110-141 6-38 (448)
479 PRK12549 shikimate 5-dehydroge 79.5 2.4 5.2E-05 42.8 4.4 31 111-141 128-160 (284)
480 COG1179 Dinucleotide-utilizing 79.3 2.3 5E-05 41.5 3.9 33 111-143 31-65 (263)
481 COG1893 ApbA Ketopantoate redu 79.2 3.4 7.3E-05 42.3 5.4 30 112-141 2-32 (307)
482 PRK08306 dipicolinate synthase 79.1 2.5 5.3E-05 43.0 4.4 32 110-141 152-184 (296)
483 cd00755 YgdL_like Family of ac 78.4 3 6.6E-05 40.7 4.6 35 110-144 11-47 (231)
484 PRK00683 murD UDP-N-acetylmura 78.2 2.4 5.2E-05 45.3 4.2 31 112-142 5-36 (418)
485 PRK15461 NADH-dependent gamma- 78.1 2.7 5.9E-05 42.6 4.4 30 112-141 3-33 (296)
486 TIGR02441 fa_ox_alpha_mit fatt 78.0 2.4 5.3E-05 48.7 4.4 31 111-141 336-367 (737)
487 PLN02494 adenosylhomocysteinas 78.0 2.8 6E-05 45.2 4.5 32 111-142 255-287 (477)
488 TIGR03736 PRTRC_ThiF PRTRC sys 77.8 3.2 7E-05 40.9 4.6 35 110-144 11-57 (244)
489 PRK08223 hypothetical protein; 77.5 3.4 7.4E-05 41.7 4.7 34 110-143 27-62 (287)
490 PRK04308 murD UDP-N-acetylmura 77.5 2.7 5.9E-05 45.2 4.4 31 112-142 7-38 (445)
491 PRK09496 trkA potassium transp 77.3 2.8 6E-05 45.1 4.4 30 112-141 2-32 (453)
492 TIGR02853 spore_dpaA dipicolin 77.0 3 6.6E-05 42.2 4.3 31 111-141 152-183 (287)
493 PRK04690 murD UDP-N-acetylmura 76.6 2.8 6.1E-05 45.5 4.2 31 112-142 10-41 (468)
494 cd05291 HicDH_like L-2-hydroxy 76.6 3.1 6.8E-05 42.4 4.3 30 112-141 2-34 (306)
495 cd01339 LDH-like_MDH L-lactate 76.6 2.7 5.8E-05 42.7 3.8 29 113-141 1-31 (300)
496 TIGR02732 zeta_caro_desat caro 76.3 9.3 0.0002 41.5 8.1 32 112-143 1-33 (474)
497 COG1063 Tdh Threonine dehydrog 76.1 3.4 7.3E-05 43.1 4.5 30 112-141 171-202 (350)
498 PRK07208 hypothetical protein; 76.1 9 0.0002 41.4 8.0 33 110-142 4-37 (479)
499 PRK02006 murD UDP-N-acetylmura 75.6 3.1 6.7E-05 45.5 4.3 30 112-141 9-39 (498)
500 PRK11559 garR tartronate semia 75.6 3.5 7.6E-05 41.6 4.4 30 112-141 4-34 (296)
No 1
>PLN02697 lycopene epsilon cyclase
Probab=100.00 E-value=1.3e-31 Score=289.16 Aligned_cols=404 Identities=16% Similarity=0.188 Sum_probs=251.1
Q ss_pred CCCchhhhhhccccccceecCCchhh----hhHHHHHhhHhHHhhhcccCccccccceeecCCCCCCCCCCCCCCCCccc
Q 009427 37 AVPSRTRRIMESISVSGEVGGAGGAY----SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFD 112 (535)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~gg~~----~~~~l~~~d~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 112 (535)
.++.+|+++.|++++++++.++||++ ++++|+-++.. +++. .. ++..+ ..+..||
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~-----------~~~~~---~~~~~~D 110 (529)
T PLN02697 52 SGSESCVVVDEEFADEEDYIKAGGSELLFVQMQANKSMDEQ-SKIA------DK-----------LPPIS---IGDGTLD 110 (529)
T ss_pred cCCcceeeeccccccHhhhhhccccchhHHHHHhcCCcccc-cccc------cc-----------CCCCC---cccCccc
Confidence 46999999999999999999999988 33333333322 2221 00 11111 1233699
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccCc
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
|+||| ||+|+++|+.|++.|++|+|||+.... ...+.++..+++.+ |+ +.++...|....+.+. .+.
T Consensus 111 VvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~--~~n~GvW~~~l~~l---gl------~~~i~~~w~~~~v~~~-~~~ 178 (529)
T PLN02697 111 LVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TNNYGVWEDEFKDL---GL------EDCIEHVWRDTIVYLD-DDK 178 (529)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEecCcccC--CCccccchhHHHhc---Cc------HHHHHhhcCCcEEEec-CCc
Confidence 99999 999999999999999999999986321 12244554554444 65 2233334432222221 111
Q ss_pred ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE-EEcCCeEEEcCeEEEccCCChHHHHHhCCC
Q 009427 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFSPVVKQAFPA 270 (535)
Q Consensus 192 ~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v-~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~ 270 (535)
....+.....+++..|.+.|.+++.+.|+++ .+++|+++..+++++.+ .+.+|.+++|++||+|||++|....+ ++.
T Consensus 179 ~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~-~~~ 256 (529)
T PLN02697 179 PIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQ-YEV 256 (529)
T ss_pred eeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhc-ccc
Confidence 1111221224899999999999999999988 57799999877676543 45677889999999999999942211 111
Q ss_pred CCCCC--CceeEEEEEe-cCCCCCCChHHH-----------------HHHHhhhccCccCC-CC--------Cccc----
Q 009427 271 GSGPL--DRTTYMFTYI-DPQAGSPKLEEL-----------------LERYWDLMPEYQGV-TL--------DNLE---- 317 (535)
Q Consensus 271 ~~~~~--~~~~~~~~y~-~~~~~~~~l~~~-----------------~~~~~~~~P~~~~~-~~--------~~~~---- 317 (535)
.++. ....+-..+. +..+.+++...+ ..+|.|+||...+. .. +.+.
T Consensus 257 -~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l 335 (529)
T PLN02697 257 -GGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLL 335 (529)
T ss_pred -CCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHH
Confidence 0100 0111111111 001111111000 12467788875421 00 0000
Q ss_pred -----------------hhcchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427 318 -----------------IQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 380 (535)
Q Consensus 318 -----------------~~r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~ 380 (535)
..+...|.+|... +++...+++++|||||+++||.||+|+..++..|..+|+.|+++++.+
T Consensus 336 ~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g--~~~~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~ 413 (529)
T PLN02697 336 KKRLMSRLETMGIRILKTYEEEWSYIPVGG--SLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNV 413 (529)
T ss_pred HHHHHHHHHhCCCCcceEEEEEeeeecCCC--CCcccCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCC
Confidence 0112336678755 444447899999999999999999999999999999999999999866
Q ss_pred C---------CChhchhhhCCCCchhhh-----hHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhh
Q 009427 381 F---------VDSYSLSLLNPYMPNLSA-----SWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDV 446 (535)
Q Consensus 381 ~---------~~~~~l~~l~~y~~~~~~-----~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~ 446 (535)
. .+... ++.|+..+.. ...+...+... ..++++.+ +.+|..|.+||++.+..|+..+
T Consensus 414 ~~~~~~~~~~~~~~~---l~~~~~lw~~e~~r~~~~~~~g~~~l--~~l~~~~~----~~ff~~ff~L~~~~~~~Fl~~~ 484 (529)
T PLN02697 414 SSGGKLGTSNSSNIS---MQAWNTLWPQERKRQRAFFLFGLALI--LQLDTEGI----RTFFVTFFRLPKWMWQGFLGST 484 (529)
T ss_pred ccccccccccchHHH---HHHHHHhChHHHHHHHHHHHHHHHHH--HCCCHHHH----HHHHHHHHCCCHHHHhhHhhcc
Confidence 4 11222 2334433322 11222233322 23455554 5566666689999999999999
Q ss_pred cCcchHHHHHHHHHhhCCCChHHHHhh--cChhhHhHhHHHHH
Q 009427 447 IKFGPLAKTLGLVMLNKPQIIPSIFKQ--VGIPVLVDWSGHFF 487 (535)
Q Consensus 447 ~~~~~l~~~~~~~~~~~P~~~~~~l~~--~~~~~~~~~~~~~~ 487 (535)
.+..++..+++.++...|..+.+-+.. .+..+...++..|+
T Consensus 485 l~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 527 (529)
T PLN02697 485 LSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYL 527 (529)
T ss_pred CCHHHHHHHHHHHHHhCChhHHHHHHHhhcCCchHhHHHHHhh
Confidence 999999999999999999888655543 45455556666664
No 2
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=100.00 E-value=3e-32 Score=270.14 Aligned_cols=371 Identities=18% Similarity=0.208 Sum_probs=235.6
Q ss_pred CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccc-cc-ccHHHHHHHHHcCCCC-hHhHHHHHhh---hc
Q 009427 107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE-WN-ISRKELLELVESGILV-EDDIDEATAT---KF 179 (535)
Q Consensus 107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~-~~-is~~~l~~L~~lGl~~-~~~~~~~~~~---~~ 179 (535)
.+.++|||||| |++|.++|+.|+|.|.||+||||+.-.. ++. ++ +++.....|.++|+.+ .+.+++.... .|
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP-dRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~if 120 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIF 120 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc-hHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEE
Confidence 34479999999 9999999999999999999999994322 222 11 3455566777779833 2223322221 22
Q ss_pred CCC-cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC---eEEEEEcCC--eEEEcCeE
Q 009427 180 NPN-RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN---AAVLLLAEG--KILSSHLI 253 (535)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~---gv~v~~~~G--~~i~a~lV 253 (535)
..+ ++....+.+-+..+..+..++..+|++.|++++......-+++..|+++..+++ |++...++| .+..|.+.
T Consensus 121 k~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLT 200 (509)
T KOG1298|consen 121 KDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT 200 (509)
T ss_pred eCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceE
Confidence 222 222221222233344566789999999999999887655556667888866554 223333344 35789999
Q ss_pred EEccCCChHHHHHhCCCCCCCCCceeEEEEEecC-----CC--------------------------------CCCChHH
Q 009427 254 IDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDP-----QA--------------------------------GSPKLEE 296 (535)
Q Consensus 254 V~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~-----~~--------------------------------~~~~l~~ 296 (535)
|+|||++|.+|+.+.+.... +...+..++.-. .+ .-|+...
T Consensus 201 vVCDGcfSnlRrsL~~~~v~--~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~ 278 (509)
T KOG1298|consen 201 VVCDGCFSNLRRSLCDPKVE--EVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIAN 278 (509)
T ss_pred EEecchhHHHHHHhcCCccc--ccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccc
Confidence 99999999999986543110 112222222100 00 0011100
Q ss_pred -HHHHHhhhccCccCCCCCccch-hcchh---------ccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHH
Q 009427 297 -LLERYWDLMPEYQGVTLDNLEI-QRVIY---------GIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 365 (535)
Q Consensus 297 -~~~~~~~~~P~~~~~~~~~~~~-~r~~~---------g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~d 365 (535)
.+..|..- ...++... .|..| ..+|.....+......+++++|||.+|.||++|+||..++.|
T Consensus 279 gem~~~mk~------~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~D 352 (509)
T KOG1298|consen 279 GEMATYMKE------SVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSD 352 (509)
T ss_pred hhHHHHHHH------hhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhH
Confidence 11111100 00011110 11111 224555544444557999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhhHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhh
Q 009427 366 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQD 445 (535)
Q Consensus 366 a~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~ 445 (535)
...|.+.|.. + .+..+.+.+.. ..-++...++.....||.+.++++++|....++.++++.+.
T Consensus 353 i~lLr~ll~p-l-~dL~d~ekv~~---------------~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~g 415 (509)
T KOG1298|consen 353 IVLLRRLLKP-L-PDLSDAEKVSD---------------YIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKG 415 (509)
T ss_pred HHHHHHHhcc-c-cccccHHHHHH---------------HHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 9988887643 1 12222222111 11123333455567899999999999999899999999999
Q ss_pred hcCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHHHHHHHHHHHHHHhhhhhhHHhhhhcCCcchhHHHHHH
Q 009427 446 VIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRY 521 (535)
Q Consensus 446 ~~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (535)
|+++..+++. +..+| ..+|++++|+| +.+++|||++++|+++++|. |+| | .+.+|+-+
T Consensus 416 CfdYl~~GG~----c~sGp---v~lLsGlnP~P-l~Lv~HffAValy~i~~ll~-p~P--s-------P~riw~s~ 473 (509)
T KOG1298|consen 416 CFDYLKRGGF----CVSGP---VALLSGLNPRP-LSLVLHFFAVALYGIYRLLS-PFP--S-------PRRIWESL 473 (509)
T ss_pred HHHHHhcCCc----cccch---HHHhcCCCCCc-hHHHHHHHHHHHHHHHHHcC-CCC--C-------HHHHHHHH
Confidence 9999776544 56777 57889999998 59999999999999999998 444 2 24667654
No 3
>PLN02463 lycopene beta cyclase
Probab=99.97 E-value=1e-29 Score=270.55 Aligned_cols=355 Identities=17% Similarity=0.168 Sum_probs=235.6
Q ss_pred CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427 107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (535)
Q Consensus 107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 185 (535)
....|||+||| ||+|+++|+.|+++|++|+|||+.+.....+.+.++..+++.+ |+ .+++...|....+.
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~l---gl------~~~l~~~w~~~~v~ 95 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEAL---GL------LDCLDTTWPGAVVY 95 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHC---Cc------HHHHHhhCCCcEEE
Confidence 44479999999 9999999999999999999999986444344444444444444 75 22333334322222
Q ss_pred ccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHH
Q 009427 186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK 265 (535)
Q Consensus 186 ~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~ 265 (535)
+....... .+.....+++..|.+.|.+++.+.|++++ .++|++++.+++++.|++++|.+++|++||+|||..|.+.+
T Consensus 96 ~~~~~~~~-~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~ 173 (447)
T PLN02463 96 IDDGKKKD-LDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQ 173 (447)
T ss_pred EeCCCCcc-ccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccC
Confidence 21111111 12223347899999999999988899986 57999998888888888888888999999999999987654
Q ss_pred HhCCCCCCCCCceeEEEEEe---c--CCCCCCC-----------------hHH---HHHHHhhhccCccCC---------
Q 009427 266 QAFPAGSGPLDRTTYMFTYI---D--PQAGSPK-----------------LEE---LLERYWDLMPEYQGV--------- 311 (535)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~y~---~--~~~~~~~-----------------l~~---~~~~~~~~~P~~~~~--------- 311 (535)
..-+. ...+...|. + ..+.+++ +.+ ....|.|.+|...+.
T Consensus 174 ~~~~~------~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~ 247 (447)
T PLN02463 174 YDKPF------NPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLV 247 (447)
T ss_pred CCCCC------CccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeee
Confidence 21111 111111110 0 0111110 000 012466777765431
Q ss_pred ---CC--Cccc----------------hhcchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427 312 ---TL--DNLE----------------IQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 370 (535)
Q Consensus 312 ---~~--~~~~----------------~~r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La 370 (535)
.+ ++++ ..+...+.||... +++...+|+++|||||+++||.||+||..+++.+..+|
T Consensus 248 s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~--~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a 325 (447)
T PLN02463 248 ARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGG--PLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVA 325 (447)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeCCC--CCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHH
Confidence 00 0110 0011225577755 44455689999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCC--------hhchhhhCCCCchhhhhHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhH
Q 009427 371 TGVYEAVRGDFVD--------SYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPF 442 (535)
Q Consensus 371 ~~l~~al~~~~~~--------~~~l~~l~~y~~~~~~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f 442 (535)
++|+++++.+..+ .+..+.+.+++.. ...-.|+.+|.... +++.. .++.||..|+++|+..+..|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~-~~~~~~~fg~~~l~--~~~~~----~~~~ff~~ff~l~~~~~~gf 398 (447)
T PLN02463 326 DAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERR-RQREFFCFGMDILL--KLDLD----GTRRFFDAFFDLEPHYWHGF 398 (447)
T ss_pred HHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHh-HhHHHHHhHHHHHH--cCChH----HHHHHHHHHHcCCHHHcccc
Confidence 9999999865441 2112223333221 12223333444322 22222 36788899999999999999
Q ss_pred HhhhcCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHHHHH
Q 009427 443 LQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFF 487 (535)
Q Consensus 443 ~~~~~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~~~~ 487 (535)
+..+.+..+|..+++.++...|.-+.+.+...|+.++..++.++.
T Consensus 399 l~~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~ 443 (447)
T PLN02463 399 LSSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLI 443 (447)
T ss_pred ccCCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhc
Confidence 999999999999999999999999999999999999988887764
No 4
>PLN02985 squalene monooxygenase
Probab=99.97 E-value=5.1e-30 Score=278.06 Aligned_cols=363 Identities=16% Similarity=0.173 Sum_probs=214.1
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHh------hhc
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA------TKF 179 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~------~~~ 179 (535)
+.++||+||| |++|+++|+.|+++|++|+|+||....... ....+++..++.|.++|+.+. ++.... ..+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~--l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDC--LEGIDAQKATGMAVY 118 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcch--hhhccCcccccEEEE
Confidence 3469999999 999999999999999999999998532211 111245556677777798542 221111 011
Q ss_pred CCC-c--ccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe---EEEEEcCCe--EEEc
Q 009427 180 NPN-R--CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--ILSS 250 (535)
Q Consensus 180 ~~~-~--~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~g---v~v~~~~G~--~i~a 250 (535)
..+ . ..+......+......+.+++..|.+.|++++.+. +++++++ +++++..+++. +++..++|+ +++|
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A 197 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA 197 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence 111 1 11110000000112234678899999999999876 5777755 67777555443 333334564 4679
Q ss_pred CeEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCC--CCCC-hHHHH--HHHhhh-------------ccCccCCC
Q 009427 251 HLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQA--GSPK-LEELL--ERYWDL-------------MPEYQGVT 312 (535)
Q Consensus 251 ~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~--~~~~-l~~~~--~~~~~~-------------~P~~~~~~ 312 (535)
|+||+|||.+|.+|++...... ....+...|..... ..+. ...++ .....+ .|......
T Consensus 198 dLVVgADG~~S~vR~~l~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~ 274 (514)
T PLN02985 198 PLTVVCDGCYSNLRRSLNDNNA---EVLSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPS 274 (514)
T ss_pred CEEEECCCCchHHHHHhccCCC---cceeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCC
Confidence 9999999999999998643211 12233333321100 0110 00000 000000 11100000
Q ss_pred --------------CCccc-hhcchh--c--------cccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHH
Q 009427 313 --------------LDNLE-IQRVIY--G--------IFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLG 367 (535)
Q Consensus 313 --------------~~~~~-~~r~~~--g--------~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~ 367 (535)
.+.+. ..+..+ + .+|...........+|+++||||||++||++|||||+|++||.
T Consensus 275 ~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~ 354 (514)
T PLN02985 275 IANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDIL 354 (514)
T ss_pred cChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHH
Confidence 00000 000011 0 0122111111112489999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhch-hhhCCCCchhhhhHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhh
Q 009427 368 RLSTGVYEAVRGDFVDSYSL-SLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDV 446 (535)
Q Consensus 368 ~La~~l~~al~~~~~~~~~l-~~l~~y~~~~~~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~ 446 (535)
.|++.|.+. . +..+...+ ..++. |++ .++...+.||.+..+++..+...+++.++.+-+.|
T Consensus 355 vLa~lL~~~-~-~~~~~~~~~~aL~~----------y~~------~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~ 416 (514)
T PLN02985 355 ILRRLLQPL-S-NLGNANKVSEVIKS----------FYD------IRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGC 416 (514)
T ss_pred HHHHHhhhc-c-cccchhHHHHHHHH----------HHH------HhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999988652 1 11011111 01111 221 12334568999999999988766778888899999
Q ss_pred cCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHHHHHHHHHHHHHHhhhhhhH
Q 009427 447 IKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVI 503 (535)
Q Consensus 447 ~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (535)
+.+..+++. +..+| ..+|+++.|+| +.++.|||++++|++...+. +++
T Consensus 417 f~y~~~g~~----~~~~~---~~ll~~~~~~p-~~l~~h~~~v~~~~~~~~~~-~~~ 464 (514)
T PLN02985 417 YDYLCSGGF----RTSGM---MALLGGMNPRP-LSLIYHLCAITLSSIGHLLS-PFP 464 (514)
T ss_pred HHHHHcCCc----ccccc---HHHHcCCCCCc-HHHHHHHHHHHHHHHHHHhc-ccC
Confidence 988666544 46777 57889999998 59999999999999999887 443
No 5
>PTZ00367 squalene epoxidase; Provisional
Probab=99.96 E-value=2.5e-27 Score=258.58 Aligned_cols=363 Identities=15% Similarity=0.168 Sum_probs=200.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc--cccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW--NISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~--~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~ 186 (535)
++|||||| |++|+++|+.|+++|++|+|+||++.....+.. .+++..++.|.++|+++ .++.. ..... +...+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d--~l~~i-~~~~~-~~~v~ 108 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEE--CAEGI-GMPCF-GYVVF 108 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChh--hHhhc-Cccee-eeEEE
Confidence 69999999 999999999999999999999998632211222 36677788888889853 22211 11110 00001
Q ss_pred cccCccee----eeccccccCHHHHHHHHHHHH---HhCCCEEEeCceEEEEEEeCC-------eEEEEEcC--------
Q 009427 187 EGKGEIWV----EDILNLGVSPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE-------- 244 (535)
Q Consensus 187 ~~~~~~~~----~~~~~~~v~~~~l~~~L~~~a---~~~G~~i~~~~~V~~i~~~~~-------gv~v~~~~-------- 244 (535)
..++.... ....+..++...+.+.|++++ ...++++++ .+|+++..+++ +++++..+
T Consensus 109 ~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~ 187 (567)
T PTZ00367 109 DHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENP 187 (567)
T ss_pred ECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccccccc
Confidence 11111100 011123456788888888877 334778865 47888754433 35454433
Q ss_pred ---------------CeEEEcCeEEEccCCChHHHHHhCCCCCCCCCceeEEEE-EecCCCCCCChHH-HH--HHHhhhc
Q 009427 245 ---------------GKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFT-YIDPQAGSPKLEE-LL--ERYWDLM 305 (535)
Q Consensus 245 ---------------G~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~-y~~~~~~~~~l~~-~~--~~~~~~~ 305 (535)
+++++||+||+|||.+|.+|++.............+.-. ..+.....+.... ++ .+.+.++
T Consensus 188 f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~y 267 (567)
T PTZ00367 188 FREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILSY 267 (567)
T ss_pred cccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEEE
Confidence 567999999999999999999864321110001111000 0110000000000 00 0111112
Q ss_pred cCccCC-------------------------CCCccc-hhcchh-------c---cccCCCCCCCCccCCCeeEeecCCC
Q 009427 306 PEYQGV-------------------------TLDNLE-IQRVIY-------G---IFPTYRDSPLPAAFNRILQFGDASG 349 (535)
Q Consensus 306 P~~~~~-------------------------~~~~~~-~~r~~~-------g---~~P~~~~~pl~~~~~rvlliGDAA~ 349 (535)
|...+. ..+.+. ..+..+ + .+|.....+.+...+|+++||||||
T Consensus 268 Pl~~~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH 347 (567)
T PTZ00367 268 RLDDNELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGDHAN 347 (567)
T ss_pred EcCCCeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEcccC
Confidence 211100 000000 000001 0 1122111122223589999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhh-hhHHHHHhhhhccCCCCChHHHHHHHHHHH
Q 009427 350 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS-ASWLFQRAMSAKQQSDVSPDFINELLYVNF 428 (535)
Q Consensus 350 ~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~-~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f 428 (535)
++||++|||+|++++|+..|++.|....+....+..+...+ ...+. ....|++ .++.....|+.+...++
T Consensus 348 ~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v---~~aL~~~~~~Y~~------~Rk~~a~~i~~ls~aL~ 418 (567)
T PTZ00367 348 QRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEI---EDAIQAAILSYAR------NRKTHASTINILSWALY 418 (567)
T ss_pred CCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHH---HHHHHHhHHHHHH------HhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999865332100010000000 00010 0011221 22334567888888877
Q ss_pred HhhhhCCchhhhhHHhhhcCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHHHHHHHHHHHHHHhhhh
Q 009427 429 QCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFAD 500 (535)
Q Consensus 429 ~~l~~l~~~~~~~f~~~~~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (535)
..+.. ..++ +.|+.+..+++ .+..+| ..+|+++.|+| +.++.|||++++|+++.++..
T Consensus 419 ~lf~~--~~lr----~~~~~y~~~gg----~~~~~p---~~ll~g~~~~p-~~l~~h~~~v~~~~~~~~~~~ 476 (567)
T PTZ00367 419 SVFSS--PALR----DACLDYFSLGG----ECVTGP---MSLLSGLDPSP-GGLLFHYFSVALYGVLNLIME 476 (567)
T ss_pred HHhCh--HHHH----HHHHHHHhcCC----cccccc---HHHHcCCCCCc-HHHHHHHHHHHHHHHHHHhcc
Confidence 77765 3344 44444444433 346778 57889999998 599999999999999998873
No 6
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.95 E-value=4.2e-26 Score=240.32 Aligned_cols=335 Identities=18% Similarity=0.190 Sum_probs=199.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
|||||| ||+|+++|+.|++.|++|+|||+.+..+....|.++...++.+ ++ +..+...|...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~ 71 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDL---GL------ADCVEHVWPDVYEYRFPKQ 71 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhh---ch------hhHHhhcCCCceEEecCCc
Confidence 899999 9999999999999999999999986444455666555554443 43 2222223321110000011
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFP 269 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p 269 (535)
... .......+++..|.+.|.+.+.+.|++++ .++|++++.+ ++.+.|++.+|++++|++||+|||.+|.++....+
T Consensus 72 ~~~-~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~ 149 (388)
T TIGR01790 72 PRK-LGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFP 149 (388)
T ss_pred chh-cCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCC
Confidence 110 01122348899999999999998888886 5688888766 55677787778789999999999999855322212
Q ss_pred CCCCCCCceeEEEEEecC-CCCCCC----------------hHHHHHHHhhhccCccCC------C------CCccchh-
Q 009427 270 AGSGPLDRTTYMFTYIDP-QAGSPK----------------LEELLERYWDLMPEYQGV------T------LDNLEIQ- 319 (535)
Q Consensus 270 ~~~~~~~~~~~~~~y~~~-~~~~~~----------------l~~~~~~~~~~~P~~~~~------~------~~~~~~~- 319 (535)
...+ . ...+-..+... .+..++ .....++|.|++|...+. . ++.-...
T Consensus 150 ~~~~-~-q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~ 227 (388)
T TIGR01790 150 LNVG-F-QVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQ 227 (388)
T ss_pred CCce-E-EEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHH
Confidence 1000 0 00000111100 000000 000012267778865321 0 0000000
Q ss_pred -----------------cchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCC
Q 009427 320 -----------------RVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFV 382 (535)
Q Consensus 320 -----------------r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~ 382 (535)
+...+.+|.... .+...+|+++||||||+++|+||+|++.+++++..+++.|.+++..+
T Consensus 228 ~l~~~~~~~g~~~~~i~~~~~~~iP~~~~--~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-- 303 (388)
T TIGR01790 228 RILARLNAQGWQIKTIEEEEWGALPVGLP--GPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-- 303 (388)
T ss_pred HHHHHHHHcCCeeeEEEeeeeEEEecccC--CCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC--
Confidence 011234565442 22246899999999999999999999999999999999999998654
Q ss_pred ChhchhhhCCCCch-hhhhHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhhcCcchHHHHHHHHHh
Q 009427 383 DSYSLSLLNPYMPN-LSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVML 461 (535)
Q Consensus 383 ~~~~l~~l~~y~~~-~~~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~~~~~~l~~~~~~~~~ 461 (535)
+...+..++++.+. ......+ +.+........+++.. ..+|..|.+++.+....|+....++.+..++++.++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~f~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~ 378 (388)
T TIGR01790 304 SELATAAWDGLWPTERRRQRYF-RLLGRMLFLALEPEER----RRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFG 378 (388)
T ss_pred HHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHcCCHHHH----HHHHHHHHCCCHHHHhhhhcCCCCHHHHHHHHHHHhC
Confidence 23333333222111 1110011 1111111133445554 4455566568889999999999999999999988888
Q ss_pred hCCCChH
Q 009427 462 NKPQIIP 468 (535)
Q Consensus 462 ~~P~~~~ 468 (535)
+.|..+.
T Consensus 379 ~~~~~~~ 385 (388)
T TIGR01790 379 QPPNPVR 385 (388)
T ss_pred cCChhhh
Confidence 8786543
No 7
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.94 E-value=1.7e-25 Score=235.71 Aligned_cols=266 Identities=21% Similarity=0.250 Sum_probs=165.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc--CCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN--TLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TKFNP 181 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~--~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~ 181 (535)
.+||+||| ||+|+++|+.|+++|++|+||||. .+....+...++...++.|.++|+. +.++..-. ..+..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~--~~i~~~~~~~~~~~~~~~ 79 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLW--DRLEALGVPPLHVMVVDD 79 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCCh--hhhhhccCCceeeEEEec
Confidence 58999999 999999999999999999999998 2222334455788889999888973 22222111 00111
Q ss_pred -C--cccccccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEc-CCeEEEcCeEEEc
Q 009427 182 -N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDA 256 (535)
Q Consensus 182 -~--~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~-~G~~i~a~lVV~A 256 (535)
+ .+.+.. .........+.+.+..+.+.|.+++.+.+ ++++.+++|+.++.+++.+.++++ +|++++||+||+|
T Consensus 80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA 157 (387)
T COG0654 80 GGRRLLIFDA--AELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA 157 (387)
T ss_pred CCceeEEecc--cccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence 1 111111 11111233556888999999999998886 799999999999998888888887 8999999999999
Q ss_pred cCCChHHHHHhC-CCCCCCCCceeEEEEEecCC-CCCCChHHHH--HHHhhhccCcc-CC---------------CCCcc
Q 009427 257 MGNFSPVVKQAF-PAGSGPLDRTTYMFTYIDPQ-AGSPKLEELL--ERYWDLMPEYQ-GV---------------TLDNL 316 (535)
Q Consensus 257 dG~~S~v~~~~~-p~~~~~~~~~~~~~~y~~~~-~~~~~l~~~~--~~~~~~~P~~~-~~---------------~~~~~ 316 (535)
||.+|.+|++.. +................... +........+ .+.+.++|... .. ..+..
T Consensus 158 DG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (387)
T COG0654 158 DGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDE 237 (387)
T ss_pred CCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCHH
Confidence 999999999865 22111011111111111110 1000000000 11122223220 00 00111
Q ss_pred chhcchhccccCC------------CCCCC------CccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427 317 EIQRVIYGIFPTY------------RDSPL------PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 317 ~~~r~~~g~~P~~------------~~~pl------~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~ 378 (535)
.+.+.+...+|.. ...|+ +...+|++|+|||||.+||+.|||+|.+++|+..|+++|.++..
T Consensus 238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 238 EFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred HHHHHHHHhcCcccccceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 1100000001100 01122 22359999999999999999999999999999999999999886
Q ss_pred C
Q 009427 379 G 379 (535)
Q Consensus 379 ~ 379 (535)
.
T Consensus 318 ~ 318 (387)
T COG0654 318 P 318 (387)
T ss_pred c
Confidence 4
No 8
>PRK08013 oxidoreductase; Provisional
Probab=99.94 E-value=3.9e-25 Score=234.02 Aligned_cols=268 Identities=17% Similarity=0.166 Sum_probs=160.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-------cccccccHHHHHHHHHcCCCChHhHHHH--Hh--h
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEA--TA--T 177 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-------~~~~~is~~~l~~L~~lGl~~~~~~~~~--~~--~ 177 (535)
++||+||| ||+|+++|+.|+++|++|+||||.+.... .+...++...++.|.++|+++.-.-... +. .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 58999999 99999999999999999999999864221 1222356667777888898542110100 00 1
Q ss_pred hcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427 178 KFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (535)
Q Consensus 178 ~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lV 253 (535)
.+.+. .+.+.. ..+......+.+++..|.+.|.+++.+. |++++.+++|++++.+++++.+++.+|++++||+|
T Consensus 83 ~~~~~~~~~~~~~~--~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDD--QSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEcc--cccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence 11111 111111 0010111235678899999999999885 78999999999998888889888888889999999
Q ss_pred EEccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCC-ChHHHH-HHHhhhccCccC--C---------------CC
Q 009427 254 IDAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSP-KLEELL-ERYWDLMPEYQG--V---------------TL 313 (535)
Q Consensus 254 V~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~-~l~~~~-~~~~~~~P~~~~--~---------------~~ 313 (535)
|+|||.+|.++++......+. .....+.+......+... ....+. ++++.++|...+ . ..
T Consensus 161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T PRK08013 161 VGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA 240 (400)
T ss_pred EEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHHHcC
Confidence 999999999999853221110 011111111111001000 000000 112222332110 0 00
Q ss_pred Cccchhcc---hhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHH
Q 009427 314 DNLEIQRV---IYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA 376 (535)
Q Consensus 314 ~~~~~~r~---~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~a 376 (535)
....+.+. .++ .+|.... ..+.+ .+|++|+|||||.++|+.|||+|.+++||..|+++|...
T Consensus 241 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~ 319 (400)
T PRK08013 241 PEEEFNRALAIAFDNRLGLCELESERQVFPLTGR-YARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRL 319 (400)
T ss_pred CHHHHHHHHHHHHhHhhCceEecCCccEEeccee-ecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 00000000 000 0111110 11222 599999999999999999999999999999999999887
Q ss_pred HhCC
Q 009427 377 VRGD 380 (535)
Q Consensus 377 l~~~ 380 (535)
+..+
T Consensus 320 ~~~~ 323 (400)
T PRK08013 320 HRQG 323 (400)
T ss_pred HhcC
Confidence 6544
No 9
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.93 E-value=7.1e-25 Score=231.18 Aligned_cols=266 Identities=18% Similarity=0.180 Sum_probs=159.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-------cccccccHHHHHHHHHcCCCChHhHHHHHhh----
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEATAT---- 177 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-------~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~---- 177 (535)
+|||+||| ||+|+++|+.|+++|++|+|||+.+.... .+...++...++.|..+|+++. ++.....
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~--~~~~~~~~~~~ 82 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDA--VQAMRSHPYRR 82 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhh--hhhhhCcccce
Confidence 69999999 99999999999999999999999853211 1222356677777777898542 2211000
Q ss_pred ----hcCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427 178 ----KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (535)
Q Consensus 178 ----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l 252 (535)
.+....+.+.. .. .......+.+++..|.+.|.+++.+. |++++.+++|+++..+++++.|.+++|++++||+
T Consensus 83 ~~~~~~~~~~~~~~~-~~-~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (391)
T PRK08020 83 LETWEWETAHVVFDA-AE-LKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKL 160 (391)
T ss_pred EEEEeCCCCeEEecc-cc-cCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence 01111121111 00 00112235678889999999998876 8999999999999888888888887888899999
Q ss_pred EEEccCCChHHHHHhCCCCCCCC-CceeEEEEEecCCC-CCCChHHHH-HHHhhhccCccCC----------------CC
Q 009427 253 IIDAMGNFSPVVKQAFPAGSGPL-DRTTYMFTYIDPQA-GSPKLEELL-ERYWDLMPEYQGV----------------TL 313 (535)
Q Consensus 253 VV~AdG~~S~v~~~~~p~~~~~~-~~~~~~~~y~~~~~-~~~~l~~~~-~~~~~~~P~~~~~----------------~~ 313 (535)
||+|||.+|.+++........+. ....+.+......+ .......++ ++...++|...+. ..
T Consensus 161 vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~ 240 (391)
T PRK08020 161 VIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQLQAM 240 (391)
T ss_pred EEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHHHHCC
Confidence 99999999999887422211111 11111111111000 000000000 1111112211100 00
Q ss_pred Cccchhcch---------------hccccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427 314 DNLEIQRVI---------------YGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 377 (535)
Q Consensus 314 ~~~~~~r~~---------------~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al 377 (535)
+.-.+.+.+ .+.+|.... +.+.+ .+|++++|||||.+||+.|||+|.+++||..|++.|.+..
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~-~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~ 319 (391)
T PRK08020 241 SMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRR-HALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNAR 319 (391)
T ss_pred CHHHHHHHHHHHhhhhccceEeccccEeeccee-ehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 000000000 011222211 12222 5999999999999999999999999999999999998876
Q ss_pred hCC
Q 009427 378 RGD 380 (535)
Q Consensus 378 ~~~ 380 (535)
+.+
T Consensus 320 ~~~ 322 (391)
T PRK08020 320 SYG 322 (391)
T ss_pred hcC
Confidence 543
No 10
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.93 E-value=7.3e-25 Score=231.29 Aligned_cols=266 Identities=22% Similarity=0.249 Sum_probs=160.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC------cccccccHHHHHHHHHcCCCChHhHHHHHhhh----
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATK---- 178 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~------~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~---- 178 (535)
.+||+||| ||+|+++|+.|+++|++|+||||.+.... .+...++...++.|.++|+++. ++......
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~--~~~~~~~~~~~~ 83 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPA--VRAARAQPYRRM 83 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhh--hhHhhCCcccEE
Confidence 68999999 99999999999999999999999864321 1223466777778888898542 22111111
Q ss_pred --cCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427 179 --FNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (535)
Q Consensus 179 --~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lV 253 (535)
+... .+.+.. .........+.+++..+.+.|.+.+.+.|++++.+++|++++.+++++++++++|++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 161 (392)
T PRK08773 84 RVWDAGGGGELGFDA--DTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA 161 (392)
T ss_pred EEEeCCCCceEEech--hccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 1110 111110 000111234567888999999999998999999999999998888888888878888999999
Q ss_pred EEccCCChHHHHHhCCCCCCCCCceeEEEEEecC-CCCCCChHH-HH-HHHhhhccCccCC----------------CCC
Q 009427 254 IDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDP-QAGSPKLEE-LL-ERYWDLMPEYQGV----------------TLD 314 (535)
Q Consensus 254 V~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~-~~~~~~l~~-~~-~~~~~~~P~~~~~----------------~~~ 314 (535)
|+|||.+|.+++..................+... .+....... +. ++.+.++|...+. ..+
T Consensus 162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~ 241 (392)
T PRK08773 162 IAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERVLALD 241 (392)
T ss_pred EEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHHHcCC
Confidence 9999999988876321111000000111111111 010000000 00 1111222221100 000
Q ss_pred ccchhc---chh----c---------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427 315 NLEIQR---VIY----G---------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 377 (535)
Q Consensus 315 ~~~~~r---~~~----g---------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al 377 (535)
...+.+ ..+ + .+|.... ..+.+ .+|++|+|||||.++|+.|||+|.+++||..|+++|.+++
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~ 320 (392)
T PRK08773 242 EAAFSRELTQAFAARLGEVRVASPRTAFPLRRQ-LVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAH 320 (392)
T ss_pred HHHHHHHHHHHHhhhhcCeEecCCccEeechhh-hhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHH
Confidence 000000 001 0 0111111 11222 5999999999999999999999999999999999999887
Q ss_pred hCC
Q 009427 378 RGD 380 (535)
Q Consensus 378 ~~~ 380 (535)
..+
T Consensus 321 ~~~ 323 (392)
T PRK08773 321 ARR 323 (392)
T ss_pred hcC
Confidence 543
No 11
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.93 E-value=1.2e-24 Score=228.22 Aligned_cols=255 Identities=16% Similarity=0.208 Sum_probs=157.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-----CcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-----REQEWNISRKELLELVESGILVEDDIDEATA-----TKF 179 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-----~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~ 179 (535)
+||+||| ||+|+++|+.|++.|++|+|+|+.+... ..+...++...++.|.++|+++ .++.... ..+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~--~l~~~~~~~~~~~~~ 79 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWE--ELEKFVAEMQDIYVV 79 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHH--HHHhhcCCCcEEEEE
Confidence 7999999 9999999999999999999999874321 1234457778888888889853 2222111 011
Q ss_pred CCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEE
Q 009427 180 NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIID 255 (535)
Q Consensus 180 ~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~ 255 (535)
++. ...+... ......+.+++..|.+.|.+++.+.+ ++++.+++++++..+++++++.+.++ +++||+||+
T Consensus 80 ~~~g~~~~~~~~~----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIg 154 (374)
T PRK06617 80 DNKASEILDLRND----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLII 154 (374)
T ss_pred ECCCceEEEecCC----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEE
Confidence 111 1111100 01123466889999999999998875 78899999999988888888888666 899999999
Q ss_pred ccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCC-ChHHH-HHHHhhhccCccCC------C-----------CCcc
Q 009427 256 AMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSP-KLEEL-LERYWDLMPEYQGV------T-----------LDNL 316 (535)
Q Consensus 256 AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~-~l~~~-~~~~~~~~P~~~~~------~-----------~~~~ 316 (535)
|||.+|.+|++.+.....+.....+.+......+... ..+.+ ..+.++++|...+. . .+.-
T Consensus 155 ADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~ 234 (374)
T PRK06617 155 CDGANSKVRSHYFANEIEKPYQTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVE 234 (374)
T ss_pred eCCCCchhHHhcCCCcccccCCeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHH
Confidence 9999999998865432111111222222111000000 00000 11223344432210 0 0000
Q ss_pred chh---cchh----c---------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHH
Q 009427 317 EIQ---RVIY----G---------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 373 (535)
Q Consensus 317 ~~~---r~~~----g---------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l 373 (535)
.+. ...+ + .+|.... ..+.+ .+|++|+|||||.+||+.|||+|.+++|+..|++.|
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L 307 (374)
T PRK06617 235 EVRFLTQRNAGNSLGKITIDSEISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIV 307 (374)
T ss_pred HHHHHHHHhhchhcCceeeccceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHH
Confidence 000 0000 1 1122111 11222 599999999999999999999999999999998876
No 12
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.93 E-value=4.6e-24 Score=226.14 Aligned_cols=266 Identities=17% Similarity=0.137 Sum_probs=159.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC---------CCcccccccHHHHHHHHHcCCCChHhHHHHHh---
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK---------GREQEWNISRKELLELVESGILVEDDIDEATA--- 176 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~---------~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--- 176 (535)
++||+||| ||+|+++|+.|+++|++|+|+|+.+.. ...+...++...++.|.++|+++ .+.....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~--~l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWD--GIAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhh--hhhHhhCccc
Confidence 48999999 999999999999999999999998621 01122346677778888889853 2221100
Q ss_pred ---hhcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEc
Q 009427 177 ---TKFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS 250 (535)
Q Consensus 177 ---~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a 250 (535)
..++.. .+.|... . ......++.+++..+.+.|.+.+.+.|++++.+++|++++.++++++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a 157 (405)
T PRK05714 80 SEMQVWDGSGTGQIHFSAA-S-VHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRA 157 (405)
T ss_pred eeEEEEcCCCCceEEeccc-c-cCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 111111 1111100 0 0011223457788889999999888899999999999998888888888888888999
Q ss_pred CeEEEccCCChHHHHHhCCCCCCCCCceeEEEE-EecCCCCCCC-hHHHH-HHHhhhccCccC-----C----C------
Q 009427 251 HLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFT-YIDPQAGSPK-LEELL-ERYWDLMPEYQG-----V----T------ 312 (535)
Q Consensus 251 ~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~-y~~~~~~~~~-l~~~~-~~~~~~~P~~~~-----~----~------ 312 (535)
|+||+|||.+|.++++...............+. .....+.... ...+. .+.+.++|...+ . .
T Consensus 158 ~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~ 237 (405)
T PRK05714 158 PLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEA 237 (405)
T ss_pred CEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHH
Confidence 999999999999998853321110000111111 1100000000 00000 112222232100 0 0
Q ss_pred -----CCccchhcc---hhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427 313 -----LDNLEIQRV---IYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 370 (535)
Q Consensus 313 -----~~~~~~~r~---~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La 370 (535)
...-.+.+. .++ .+|.... ..+.+ .+|++|+|||||.++|+.|||+|.+++||..|+
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La 316 (405)
T PRK05714 238 ERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQR-HAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLA 316 (405)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEeccee-ehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHH
Confidence 000000000 000 0111110 11223 599999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 009427 371 TGVYEAVRGD 380 (535)
Q Consensus 371 ~~l~~al~~~ 380 (535)
++|..++..+
T Consensus 317 ~~L~~~~~~g 326 (405)
T PRK05714 317 EVLLHAAERG 326 (405)
T ss_pred HHHHHHHhcC
Confidence 9998876544
No 13
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.93 E-value=2.9e-24 Score=227.03 Aligned_cols=275 Identities=22% Similarity=0.258 Sum_probs=180.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc--cccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW--NISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~--~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~ 186 (535)
+|||+||| ||||++||+.||++|++|+|+||....+...++ .++...++.+ ......+++..+. ...+.+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l---~~~~~~~i~~~v~----~~~~~~ 75 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL---IPDFDEEIERKVT----GARIYF 75 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHh---CCCcchhhheeee----eeEEEe
Confidence 69999999 999999999999999999999998766554333 3666777666 3211111222111 111111
Q ss_pred cccCcce--eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-eEEEcCeEEEccCCChHH
Q 009427 187 EGKGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 187 ~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-~~i~a~lVV~AdG~~S~v 263 (535)
. ..... ......+.+++..|.++|+++|.++|++++.+++++++..+++++++.+..+ .+++|++||+|||.+|.+
T Consensus 76 ~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 76 P-GEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred c-CCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 1 11111 1112367789999999999999999999999999999999888877666443 789999999999999999
Q ss_pred HHHhCCCCCCCCCceeEEEEEecCCCCC--CCh-HH-------HHHHHhhhccCccCC-------CCCc--cc-----hh
Q 009427 264 VKQAFPAGSGPLDRTTYMFTYIDPQAGS--PKL-EE-------LLERYWDLMPEYQGV-------TLDN--LE-----IQ 319 (535)
Q Consensus 264 ~~~~~p~~~~~~~~~~~~~~y~~~~~~~--~~l-~~-------~~~~~~~~~P~~~~~-------~~~~--~~-----~~ 319 (535)
.+++-.. . .....+...+.+..... ... .. -..+|.|++|...+. .... .. +.
T Consensus 155 ~~~lg~~-~--~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~~~~~l~ 231 (396)
T COG0644 155 ARKLGLK-D--RKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPFLELLE 231 (396)
T ss_pred HHHhCCC-C--CChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCCcCCCchHHHHH
Confidence 9885433 1 12333333333221111 111 11 125788999987531 1111 00 00
Q ss_pred c------------------chhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCC
Q 009427 320 R------------------VIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF 381 (535)
Q Consensus 320 r------------------~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~ 381 (535)
+ ...+.+|.......+...+|+++|||||++++|++|+|+..||..+..+|+.|.++++.+
T Consensus 232 ~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~- 310 (396)
T COG0644 232 RFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG- 310 (396)
T ss_pred HHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-
Confidence 0 001345555422222347999999999999999999999999999999999999998765
Q ss_pred CChhchhhhCCCCchhhhhH
Q 009427 382 VDSYSLSLLNPYMPNLSASW 401 (535)
Q Consensus 382 ~~~~~l~~l~~y~~~~~~~~ 401 (535)
.+.|+ .|++.+...+
T Consensus 311 --~~~l~---~Y~~~~~~~~ 325 (396)
T COG0644 311 --EEALA---EYERLLRKSL 325 (396)
T ss_pred --hhHHH---HHHHHHHHHH
Confidence 33343 3555554443
No 14
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.93 E-value=4.8e-24 Score=228.00 Aligned_cols=259 Identities=20% Similarity=0.222 Sum_probs=155.9
Q ss_pred CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh--hhcCCCc
Q 009427 107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA--TKFNPNR 183 (535)
Q Consensus 107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--~~~~~~~ 183 (535)
+..+|||+||| ||+|+++|+.||++|++|+|+||...........++...++.+ |+. .+.++..+. ..+.|..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~l---gl~-~~~~~~~i~~~~~~~p~~ 111 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEF---DLP-LDIIDRKVTKMKMISPSN 111 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhh---cCc-HHHHHHHhhhheEecCCc
Confidence 44479999999 9999999999999999999999984322112223555555444 763 222222221 2223321
Q ss_pred ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEEcC-------C--eEEEcC
Q 009427 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAE-------G--KILSSH 251 (535)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---~~gv~v~~~~-------G--~~i~a~ 251 (535)
..+...... .....-..+++..|.+.|.++|.+.|++++.+ .++++... ++.++|++.+ | .+++||
T Consensus 112 ~~v~~~~~~-~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~ 189 (450)
T PLN00093 112 VAVDIGKTL-KPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVD 189 (450)
T ss_pred eEEEecccC-CCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeC
Confidence 111101000 00001123799999999999999999999865 57777642 2345555422 3 479999
Q ss_pred eEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecC--CCC-----CCChHH-HH------HHHhhhccCccCCC-----
Q 009427 252 LIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDP--QAG-----SPKLEE-LL------ERYWDLMPEYQGVT----- 312 (535)
Q Consensus 252 lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~--~~~-----~~~l~~-~~------~~~~~~~P~~~~~~----- 312 (535)
+||+|||++|.++++.-.. . ..+.+.+... .+. .+...+ ++ +.|.|+||......
T Consensus 190 ~VIgADG~~S~vrr~lg~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~~~VG~g~ 263 (450)
T PLN00093 190 AVIGADGANSRVAKDIDAG-D-----YDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGT 263 (450)
T ss_pred EEEEcCCcchHHHHHhCCC-C-----cceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCcEEEEEEE
Confidence 9999999999999885221 1 1122222111 110 011111 11 24779999864210
Q ss_pred -CCccchh------c-----ch---------hccccCCCCCCCC-ccCCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427 313 -LDNLEIQ------R-----VI---------YGIFPTYRDSPLP-AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 370 (535)
Q Consensus 313 -~~~~~~~------r-----~~---------~g~~P~~~~~pl~-~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La 370 (535)
....... + .+ .+.+|.. +.+ ...+|++++|||||+++|++|+||+.||+++..++
T Consensus 264 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ip~~---~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AA 340 (450)
T PLN00093 264 VVNKPAIKKYQRATRNRAKDKIAGGKIIRVEAHPIPEH---PRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCA 340 (450)
T ss_pred ccCCCChHHHHHHHHHHhhhhcCCCeEEEEEEEEcccc---cccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHH
Confidence 0000000 0 00 0112321 122 23589999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 009427 371 TGVYEAVRGD 380 (535)
Q Consensus 371 ~~l~~al~~~ 380 (535)
+.+.++++.+
T Consensus 341 e~i~~~~~~g 350 (450)
T PLN00093 341 EAIVEGSENG 350 (450)
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 15
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.93 E-value=2.1e-24 Score=227.34 Aligned_cols=262 Identities=20% Similarity=0.228 Sum_probs=157.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC-
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN- 182 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~- 182 (535)
.+||+||| ||+|+++|+.|+++|++|+|||+.......+.+.++...++.|.++|+++ .++.... ..+...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~--~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWA--RLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchh--hhHhhcceeeEEEEEeCCC
Confidence 58999999 99999999999999999999999865433445556666677777778753 2221110 111111
Q ss_pred cc------cccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEc
Q 009427 183 RC------GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (535)
Q Consensus 183 ~~------~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~A 256 (535)
.. .+.. .........+.+++..+.+.|.+.+.+.++..+.+++|++++.+++++.|++++|++++||+||+|
T Consensus 85 ~~~~~~~~~~~~--~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A 162 (388)
T PRK07494 85 RLIRAPEVRFRA--AEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGA 162 (388)
T ss_pred CCCCCceEEEcH--HhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence 00 0000 000112234567888999999999988765558899999998888889888888888999999999
Q ss_pred cCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCCChHHH--HHHHhhhccCccCC----------------CCCccc
Q 009427 257 MGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSPKLEEL--LERYWDLMPEYQGV----------------TLDNLE 317 (535)
Q Consensus 257 dG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~~l~~~--~~~~~~~~P~~~~~----------------~~~~~~ 317 (535)
||.+|.++++........ .....+.+.+....+......++ ..+++.++|...+. ..+.-.
T Consensus 163 dG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~ 242 (388)
T PRK07494 163 DGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAA 242 (388)
T ss_pred cCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHH
Confidence 999999988742211110 11112222221111100000000 01222223321100 000000
Q ss_pred hhc-------chhccc---cCCCCCCC-----Cc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427 318 IQR-------VIYGIF---PTYRDSPL-----PA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 375 (535)
Q Consensus 318 ~~r-------~~~g~~---P~~~~~pl-----~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~ 375 (535)
+.+ ...+.+ ......|+ +. ..+|++++|||||.+||++|||+|.+++||..|++.|.+
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~ 316 (388)
T PRK07494 243 LSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED 316 (388)
T ss_pred HHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence 000 000111 00001121 12 259999999999999999999999999999999999876
No 16
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.93 E-value=4.6e-24 Score=225.76 Aligned_cols=264 Identities=23% Similarity=0.261 Sum_probs=162.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCC---cccccccHHHHHHHHHcCCCChHhHHHHHh-----hhc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATA-----TKF 179 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~---~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~ 179 (535)
|||+||| ||+|+++|+.|+++| ++|+|+||.+.... .+...++...++.|..+|+++ .+..... ..+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~--~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWD--EIAPEAQPITDMVIT 79 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChh--hhhhhcCcccEEEEE
Confidence 8999999 999999999999995 99999999864221 233346777788888889853 2221110 001
Q ss_pred CCC-----c---ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcC
Q 009427 180 NPN-----R---CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSH 251 (535)
Q Consensus 180 ~~~-----~---~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~ 251 (535)
... . ..+. ..........+.+++..+.+.|.+.+.+.|++++.+++|++++.+++++.+++++|.+++||
T Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 157 (403)
T PRK07333 80 DSRTSDPVRPVFLTFE--GEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR 157 (403)
T ss_pred eCCCCCCCccceEEec--ccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 100 0 0110 00000111224578899999999999989999999999999988888888888888889999
Q ss_pred eEEEccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCCChHH-H-HHHHhhhccCccCC-------C---------
Q 009427 252 LIIDAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSPKLEE-L-LERYWDLMPEYQGV-------T--------- 312 (535)
Q Consensus 252 lVV~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~~l~~-~-~~~~~~~~P~~~~~-------~--------- 312 (535)
+||+|||.+|.++++........ .....+.+.+....+....... + ..++++++|...+. .
T Consensus 158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~ 237 (403)
T PRK07333 158 LLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERLVA 237 (403)
T ss_pred EEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHHHC
Confidence 99999999999887742211110 1112222222111010000000 1 12334445543211 0
Q ss_pred CCccchhc---chhc-c------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427 313 LDNLEIQR---VIYG-I------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 375 (535)
Q Consensus 313 ~~~~~~~r---~~~g-~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~ 375 (535)
.+...+.. ..++ . +|... ...+.+ .+|++++|||||.++|++|||+|.+++||..|+++|.+
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~ 316 (403)
T PRK07333 238 LDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGL-TLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVE 316 (403)
T ss_pred CCHHHHHHHHHHHhhhhcCceEeccCccEeechh-hhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHH
Confidence 00000000 0011 0 11100 011222 59999999999999999999999999999999999988
Q ss_pred HHhC
Q 009427 376 AVRG 379 (535)
Q Consensus 376 al~~ 379 (535)
.++.
T Consensus 317 ~~~~ 320 (403)
T PRK07333 317 AARL 320 (403)
T ss_pred HHhc
Confidence 8753
No 17
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.93 E-value=3.9e-24 Score=227.23 Aligned_cols=268 Identities=21% Similarity=0.218 Sum_probs=156.5
Q ss_pred CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC---cccccccHHHHHHHHHcCCCChHhHHHHHhh----h
Q 009427 107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATAT----K 178 (535)
Q Consensus 107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~---~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~----~ 178 (535)
.+.++||+||| ||+|+++|+.|+++|++|+|+||.+.... .+...++...++.|.++|+++ ++...... .
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~--~l~~~~~~~~~~~ 92 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWE--KILPQIGKFRQIR 92 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhh--hhHhhcCCccEEE
Confidence 34469999999 99999999999999999999999864321 223346777888888889843 22221110 0
Q ss_pred c-CCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcC-C--eEEEc
Q 009427 179 F-NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSS 250 (535)
Q Consensus 179 ~-~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~-G--~~i~a 250 (535)
+ +.. ...+... .. ......+.+.+..+.+.|.+++.+. +++++.+++|++++.+++++.|++++ + .+++|
T Consensus 93 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~a 170 (415)
T PRK07364 93 LSDADYPGVVKFQPT-DL-GTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQS 170 (415)
T ss_pred EEeCCCCceeeeccc-cC-CCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEee
Confidence 1 000 1111100 00 0001112234456888898888775 68999999999998888888888753 2 46999
Q ss_pred CeEEEccCCChHHHHHhCCCCCCCCC-ceeEEEEEecCCC-CCCChHHH-HHHHhhhccCccCC-----CCC--------
Q 009427 251 HLIIDAMGNFSPVVKQAFPAGSGPLD-RTTYMFTYIDPQA-GSPKLEEL-LERYWDLMPEYQGV-----TLD-------- 314 (535)
Q Consensus 251 ~lVV~AdG~~S~v~~~~~p~~~~~~~-~~~~~~~y~~~~~-~~~~l~~~-~~~~~~~~P~~~~~-----~~~-------- 314 (535)
|+||+|||.+|.++++......+... ...+.+......+ .....+.+ ..++++++|...+. ...
T Consensus 171 dlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 250 (415)
T PRK07364 171 KLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALL 250 (415)
T ss_pred eEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence 99999999999999875332111000 0111111110000 00000000 01222333332110 000
Q ss_pred cc---chhc---chh-cc------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427 315 NL---EIQR---VIY-GI------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY 374 (535)
Q Consensus 315 ~~---~~~r---~~~-g~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~ 374 (535)
+. .+.. ..+ +. +|... ...+.+ .+|++++|||||.++|++|||+|.+++||..|+++|.
T Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~ 329 (415)
T PRK07364 251 ALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQL-MQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQ 329 (415)
T ss_pred CCCHHHHHHHHHHHhhhhhcCceecCCCceecchh-hhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHH
Confidence 00 0000 000 00 11110 011222 5899999999999999999999999999999999998
Q ss_pred HHHhC
Q 009427 375 EAVRG 379 (535)
Q Consensus 375 ~al~~ 379 (535)
+.++.
T Consensus 330 ~~~~~ 334 (415)
T PRK07364 330 TAHQR 334 (415)
T ss_pred HHHhc
Confidence 87653
No 18
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.93 E-value=4.1e-24 Score=226.58 Aligned_cols=266 Identities=17% Similarity=0.190 Sum_probs=159.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC-CCC-----CcccccccHHHHHHHHHcCCCChHhHHHHHh------
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT-LKG-----REQEWNISRKELLELVESGILVEDDIDEATA------ 176 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~-~~~-----~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~------ 176 (535)
.+||+||| ||+|+++|+.|+++|++|+|+|+.. ... ..+...++...++.|.++|+++ ++.+...
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~--~l~~~~~~~~~~~ 81 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQ--GIEARRAAPYIAM 81 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchh--hhhhhhCCcccEE
Confidence 58999999 9999999999999999999999962 111 1223346777888888889853 2221100
Q ss_pred hhcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427 177 TKFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (535)
Q Consensus 177 ~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l 252 (535)
..+... .+.+... ........+.+++..+.+.|.+++.+. |++++.+++|++++.+++++.|++++|++++||+
T Consensus 82 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~l 159 (405)
T PRK08850 82 EVWEQDSFARIEFDAE--SMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKL 159 (405)
T ss_pred EEEeCCCCceEEEecc--ccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCE
Confidence 111111 1111110 000011234466778888999988775 6899999999999888888889888888999999
Q ss_pred EEEccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCCChHHHH--HHHhhhccCccC-C----------------C
Q 009427 253 IIDAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSPKLEELL--ERYWDLMPEYQG-V----------------T 312 (535)
Q Consensus 253 VV~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~~l~~~~--~~~~~~~P~~~~-~----------------~ 312 (535)
||+|||.+|.++++........ .....+...+....+........+ ++.+.++|...+ . .
T Consensus 160 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~ 239 (405)
T PRK08850 160 VVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLA 239 (405)
T ss_pred EEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHHHc
Confidence 9999999999999853221110 001111111111101000000011 112223332210 0 0
Q ss_pred CCccchhc---chh----c---------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427 313 LDNLEIQR---VIY----G---------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 375 (535)
Q Consensus 313 ~~~~~~~r---~~~----g---------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~ 375 (535)
.+...+.+ ..+ + .+|.... ..+.+ .+|++++|||||.++|+.|||+|.+++|+..|+++|..
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~-~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~ 318 (405)
T PRK08850 240 MSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMR-YARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILA 318 (405)
T ss_pred CCHHHHHHHHHHHHhhhhCcEEEcccccEEeccee-eccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHH
Confidence 00000110 000 0 1121110 11222 59999999999999999999999999999999999988
Q ss_pred HHhCC
Q 009427 376 AVRGD 380 (535)
Q Consensus 376 al~~~ 380 (535)
.+..+
T Consensus 319 ~~~~~ 323 (405)
T PRK08850 319 LWQQG 323 (405)
T ss_pred HHhcC
Confidence 77543
No 19
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.92 E-value=4.3e-24 Score=224.25 Aligned_cols=263 Identities=19% Similarity=0.214 Sum_probs=161.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC------cccccccHHHHHHHHHcCCCChHhHHHHHh------hh
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATA------TK 178 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~------~~~~~is~~~l~~L~~lGl~~~~~~~~~~~------~~ 178 (535)
||+||| ||+|+++|+.|+++|++|+|+||.+..+. .+...++...++.|.++|+++ ++..... ..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~--~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWD--KIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchh--hhhhhcCCCceEEEE
Confidence 799999 99999999999999999999999965321 123446777778888889743 2222111 01
Q ss_pred cCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEE
Q 009427 179 FNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (535)
Q Consensus 179 ~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV 254 (535)
+.+. .+.+... ........+.+++..+.+.|.+.+.+.| ++++.+++|++++.+++++.+++++|+++.+|+||
T Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi 156 (385)
T TIGR01988 79 SDGGSFGALHFDAD--EIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLV 156 (385)
T ss_pred EeCCCCceEEechh--hcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEE
Confidence 1111 0111100 0001112355788999999999998887 89999999999988888888888888889999999
Q ss_pred EccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCC-ChHHH-HHHHhhhccCccCC-----CCC-----------c
Q 009427 255 DAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSP-KLEEL-LERYWDLMPEYQGV-----TLD-----------N 315 (535)
Q Consensus 255 ~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~-~l~~~-~~~~~~~~P~~~~~-----~~~-----------~ 315 (535)
+|||.+|.++++.......+ .....+...+....+... ....+ .+++++++|...+. ... .
T Consensus 157 ~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (385)
T TIGR01988 157 GADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSD 236 (385)
T ss_pred EeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCH
Confidence 99999999998753221111 111122222211111000 00000 01223333332210 000 0
Q ss_pred cchhcc---hh-------------ccccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427 316 LEIQRV---IY-------------GIFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 316 ~~~~r~---~~-------------g~~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~ 378 (535)
..+... .+ ...|... .+.+. ..+|++++|||||.++|++|||++.+++|+..|++.|.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~ 315 (385)
T TIGR01988 237 EEFLAELQRAFGSRLGAITLVGERHAFPLSL-THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARR 315 (385)
T ss_pred HHHHHHHHHHHhhhcCceEeccCcceeechh-hhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHh
Confidence 000000 00 0111111 01122 259999999999999999999999999999999999988775
Q ss_pred C
Q 009427 379 G 379 (535)
Q Consensus 379 ~ 379 (535)
.
T Consensus 316 ~ 316 (385)
T TIGR01988 316 R 316 (385)
T ss_pred c
Confidence 3
No 20
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.92 E-value=2.8e-24 Score=230.08 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=108.3
Q ss_pred ccEEEEc-chHHHHHHHHHHH----CCCcEEEEcccCCCC-------------CcccccccHHHHHHHHHcCCCChHhHH
Q 009427 111 FDVIVCG-GTLGIFIATALSF----KGLRVAIVERNTLKG-------------REQEWNISRKELLELVESGILVEDDID 172 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr----~G~~V~liEr~~~~~-------------~~~~~~is~~~l~~L~~lGl~~~~~~~ 172 (535)
|||+||| ||+|+++|+.|++ +|++|+|||+.+.+. ..+...++...++.|.++|+++ ++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~--~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWD--HIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchh--hhh
Confidence 6999999 9999999999999 899999999953211 1233446788888888889853 222
Q ss_pred HHHh------hhcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCC---CEEEeCceEEEEEEe------
Q 009427 173 EATA------TKFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY------ 234 (535)
Q Consensus 173 ~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G---~~i~~~~~V~~i~~~------ 234 (535)
..-. ..+... .+.|.... ......+.+++..+.+.|.+++.+.+ ++++.+++|++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~ 155 (437)
T TIGR01989 79 SDRIQPFGRMQVWDGCSLALIRFDRDN---GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPND 155 (437)
T ss_pred hhcCCceeeEEEecCCCCceEEeecCC---CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccC
Confidence 1100 011111 11111100 01122456788899999999988765 799999999999752
Q ss_pred -CCeEEEEEcCCeEEEcCeEEEccCCChHHHHHh
Q 009427 235 -ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQA 267 (535)
Q Consensus 235 -~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~ 267 (535)
+++++|++.+|++++|++||+|||++|.+|++.
T Consensus 156 ~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 156 NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence 457888888899999999999999999999885
No 21
>PRK10015 oxidoreductase; Provisional
Probab=99.92 E-value=9.9e-24 Score=224.89 Aligned_cols=286 Identities=19% Similarity=0.223 Sum_probs=168.0
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccc-c-cccHHHHHHHHHcCCCChHhHHHHHhh---hc-CC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE-W-NISRKELLELVESGILVEDDIDEATAT---KF-NP 181 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~-~-~is~~~l~~L~~lGl~~~~~~~~~~~~---~~-~~ 181 (535)
++||||||| ||+|+++|+.||++|++|+||||...++.... . .++...++.+.. ++.....++..+.. .+ ..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEEEeC
Confidence 369999999 99999999999999999999999876543321 1 133333444311 22111111111110 00 00
Q ss_pred C---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427 182 N---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 182 ~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG 258 (535)
. .+.+... ....+....+.+++..|.++|.+++++.|++++.+++|+++..++++++....++.+++|++||+|||
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHRE-QPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred CCceEeecccC-CCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence 0 1111100 00001112466889999999999999999999999999999877666653333556899999999999
Q ss_pred CChHHHHHhCCCCCCCCCceeEEEEEecCCCCCC-ChHHHH-----HHHhhhccCc---------------cCC------
Q 009427 259 NFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSP-KLEELL-----ERYWDLMPEY---------------QGV------ 311 (535)
Q Consensus 259 ~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~-~l~~~~-----~~~~~~~P~~---------------~~~------ 311 (535)
.+|.++++. ..... .+...+...+.......+ .++..+ ++++|++|.. ..+
T Consensus 162 ~~s~v~~~l-g~~~~-~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~~d~v~vGv~~ 239 (429)
T PRK10015 162 VNSMLGRSL-GMVPA-SDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVC 239 (429)
T ss_pred cchhhhccc-CCCcC-CCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEcCCcEEEEEEE
Confidence 999988763 21111 112233333332211111 111222 2344554421 100
Q ss_pred CCC--------------ccchh---cc-h---------hccccCCCCCCCC-ccCCCeeEeecCCCcccc--cccccchH
Q 009427 312 TLD--------------NLEIQ---RV-I---------YGIFPTYRDSPLP-AAFNRILQFGDASGIQSP--VSFGGFGS 361 (535)
Q Consensus 312 ~~~--------------~~~~~---r~-~---------~g~~P~~~~~pl~-~~~~rvlliGDAA~~~~P--~~G~Gi~~ 361 (535)
.+. .+... ++ + ...+|.......+ ...+|++++||||++++| ++|+||+.
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~ 319 (429)
T PRK10015 240 GLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDL 319 (429)
T ss_pred ehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccchhH
Confidence 000 00000 00 0 0124443211222 347999999999999995 59999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhhH
Q 009427 362 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW 401 (535)
Q Consensus 362 al~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~~ 401 (535)
||.++..+|+.+.++++.++.+...|+ .|++.+...+
T Consensus 320 A~~SG~~AAe~i~~a~~~~d~s~~~l~---~Y~~~~~~~~ 356 (429)
T PRK10015 320 AIASAQAAATTVIAAKERADFSASSLA---QYKRELEQSC 356 (429)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccHH---HHHHHHHHCH
Confidence 999999999999999987777766654 4555555443
No 22
>PRK06834 hypothetical protein; Provisional
Probab=99.92 E-value=3.5e-23 Score=223.98 Aligned_cols=264 Identities=19% Similarity=0.235 Sum_probs=158.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC--CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcC-C--Cc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEATATKFN-P--NR 183 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~--~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~-~--~~ 183 (535)
++||+||| ||+|+++|+.|+++|++|+||||.+... ..+...++...++.|.++|+++ ++..... ... . ..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~--~l~~~~~-~~~~~~~~~ 79 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIAD--RFLAQGQ-VAQVTGFAA 79 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHH--HHHhcCC-ccccceeee
Confidence 58999999 9999999999999999999999986422 2234457778888888889742 2221110 000 0 00
Q ss_pred ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v 263 (535)
..+... .........+.+....+.+.|.+.+.+.|++++.+++|++++.+++++.+++.+|.+++|++||+|||.+|.+
T Consensus 80 ~~~~~~-~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 80 TRLDIS-DFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred Eecccc-cCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 111100 0000111234466778889999999888999999999999998888888888778789999999999999998
Q ss_pred HHHh---CCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCc-------------cCC--CCCccchhc---ch
Q 009427 264 VKQA---FPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY-------------QGV--TLDNLEIQR---VI 322 (535)
Q Consensus 264 ~~~~---~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~-------------~~~--~~~~~~~~r---~~ 322 (535)
+++. +++.. .....+.....-..+.......-..+.+.+.|.. ... ..+.-.+.+ ..
T Consensus 159 R~~lgi~~~g~~--~~~~~~~~dv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (488)
T PRK06834 159 RKAAGIDFPGWD--PTTSYLIAEVEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALIAV 236 (488)
T ss_pred HhhcCCCCCCCC--cceEEEEEEEEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHh
Confidence 8774 22211 1111111111100000000000000001111110 000 000000011 11
Q ss_pred hcc-----ccCCCC-CC-----CCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427 323 YGI-----FPTYRD-SP-----LPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 379 (535)
Q Consensus 323 ~g~-----~P~~~~-~p-----l~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~ 379 (535)
++. .+.+.. .+ .+.+ .+||+|+|||||.++|+.|||||++++||.+|+++|+..++.
T Consensus 237 ~g~~~~~~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g 305 (488)
T PRK06834 237 YGTDYGIHSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG 305 (488)
T ss_pred hCCCCccccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC
Confidence 110 011100 01 1122 599999999999999999999999999999999999988863
No 23
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.92 E-value=2.2e-23 Score=219.86 Aligned_cols=257 Identities=20% Similarity=0.227 Sum_probs=155.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh--hhcCCCccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA--TKFNPNRCGFE 187 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--~~~~~~~~~~~ 187 (535)
|||+||| ||+|+++|+.|++.|++|+|+|+.........+.++...++.+ |+.+ +.+...+. ..+.+....+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l---~i~~-~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEF---DIPD-SLIDRRVTQMRMISPSRVPIK 76 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhc---CCch-HHHhhhcceeEEEcCCCceee
Confidence 7999999 9999999999999999999999982111222334565555544 7632 21221111 11222211000
Q ss_pred ccCcceeeecccc--ccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC------C--eEEEcCeEEEcc
Q 009427 188 GKGEIWVEDILNL--GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDAM 257 (535)
Q Consensus 188 ~~~~~~~~~~~~~--~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~------G--~~i~a~lVV~Ad 257 (535)
.. .+....+ .+++..|.+.|.+++.+.|++++.+ +|+++..+++++.+++.+ | .+++|++||+||
T Consensus 77 ~~----~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~Ad 151 (388)
T TIGR02023 77 VT----IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGAD 151 (388)
T ss_pred ec----cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECC
Confidence 00 0000112 3789999999999999999999765 699998877877776643 2 479999999999
Q ss_pred CCChHHHHHhCCCCCCCCCceeEEEEEecCC---CCCCChHH-HH------HHHhhhccCccCCCC------Cccc---h
Q 009427 258 GNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQ---AGSPKLEE-LL------ERYWDLMPEYQGVTL------DNLE---I 318 (535)
Q Consensus 258 G~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~---~~~~~l~~-~~------~~~~~~~P~~~~~~~------~~~~---~ 318 (535)
|.+|.++++.-..... .....+...+.... ...++..+ ++ +.|.|++|....... .... .
T Consensus 152 G~~S~v~r~lg~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~~~~~~~~~ 230 (388)
T TIGR02023 152 GANSPVAKELGLPKNL-PRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGTHGFDAKQL 230 (388)
T ss_pred CCCcHHHHHcCCCCCC-cEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECCCCCCHHHH
Confidence 9999999874211110 00011111111000 00111111 11 346788887642100 0000 0
Q ss_pred hcch---------------hccccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427 319 QRVI---------------YGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 380 (535)
Q Consensus 319 ~r~~---------------~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~ 380 (535)
...+ .+.+|.. +.+.+ .+|+++||||||+++|++|+|++.||.++..+++.|++++..+
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~ip~~---~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~ 305 (388)
T TIGR02023 231 QANLRRRAGLDGGQTIRREAAPIPMK---PRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG 305 (388)
T ss_pred HHHHHHhhCCCCceEeeeeeEecccc---ccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000 0122321 22222 5899999999999999999999999999999999999998754
No 24
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.92 E-value=7e-23 Score=224.83 Aligned_cols=267 Identities=17% Similarity=0.183 Sum_probs=155.3
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC-CCcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATA-----TKFNP 181 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~-~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~ 181 (535)
.++||+||| ||+|+++|+.|+++|++|+||||.... ...+...++...++.|.++|+.+ ++..... ..++.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~--~l~~~~~~~~~~~~~~~ 86 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLAD--EVLPHTTPNHGMRFLDA 86 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChh--HHHhhcccCCceEEEcC
Confidence 369999999 999999999999999999999998532 22344567778888888889742 2221110 00111
Q ss_pred -Ccc--cccccC-cceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc--CC--eEEEcCe
Q 009427 182 -NRC--GFEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHL 252 (535)
Q Consensus 182 -~~~--~~~~~~-~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~--~G--~~i~a~l 252 (535)
+.. .+.... ..+. ....+.+++..+.+.|.+.+.+. |++++.+++|++++.++++++++++ +| .+++||+
T Consensus 87 ~g~~~~~~~~~~~~~~g-~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~ 165 (538)
T PRK06183 87 KGRCLAEIARPSTGEFG-WPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARY 165 (538)
T ss_pred CCCEEEEEcCCCCCCCC-CChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEE
Confidence 100 110000 0000 01123467778888999988775 8999999999999988889888875 45 4799999
Q ss_pred EEEccCCChHHHHHhCCCCCCCCCceeEE-EEEecC-CCCC-CChHHHH--HHHhhhccCccC-----------CCCCcc
Q 009427 253 IIDAMGNFSPVVKQAFPAGSGPLDRTTYM-FTYIDP-QAGS-PKLEELL--ERYWDLMPEYQG-----------VTLDNL 316 (535)
Q Consensus 253 VV~AdG~~S~v~~~~~p~~~~~~~~~~~~-~~y~~~-~~~~-~~l~~~~--~~~~~~~P~~~~-----------~~~~~~ 316 (535)
||+|||.+|.+|+++-....+......+. +..... .+.. +.....+ ...+.++|...+ ...++.
T Consensus 166 vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~ 245 (538)
T PRK06183 166 VVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQL 245 (538)
T ss_pred EEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhc
Confidence 99999999999987521111100011111 111000 0000 0000000 000011111000 000000
Q ss_pred ---chhcchh-cc--ccC---------CCC--CCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427 317 ---EIQRVIY-GI--FPT---------YRD--SPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 317 ---~~~r~~~-g~--~P~---------~~~--~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~ 378 (535)
...+..+ .+ .|. +.. .....+ .+||+|+|||||.++|+.|||+|++++||..|+++|+..++
T Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~ 325 (538)
T PRK06183 246 ASPENVWRLLAPWGPTPDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLR 325 (538)
T ss_pred CCHHHHHHHHHhhCCCCcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHc
Confidence 0000000 00 000 000 001222 49999999999999999999999999999999999987664
No 25
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.92 E-value=1.7e-23 Score=221.26 Aligned_cols=264 Identities=19% Similarity=0.220 Sum_probs=156.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh--hhcCCCccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA--TKFNPNRCGFE 187 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--~~~~~~~~~~~ 187 (535)
+||+||| ||+|+++|+.|+++|++|+||||...........++...++.+ |+.. +.+...+. ..+.|....+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~---g~~~-~~~~~~i~~~~~~~p~~~~~~ 76 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEF---ALPR-DIIDRRVTKMKMISPSNIAVD 76 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhc---cCch-hHHHhhhceeEEecCCceEEE
Confidence 5899999 9999999999999999999999975322222223554444444 7632 22221111 12233211111
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEE--cC-----C--eEEEcCeEEE
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLL--AE-----G--KILSSHLIID 255 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---~~gv~v~~--~~-----G--~~i~a~lVV~ 255 (535)
.... ......-..+++..|.+.|.+++.++|++++.++ ++++... ++.+.|++ .+ | .+++|++||+
T Consensus 77 ~~~~-~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIg 154 (398)
T TIGR02028 77 IGRT-LKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIG 154 (398)
T ss_pred eccC-CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEE
Confidence 0000 0000001247899999999999999999998774 7776432 23444443 22 3 4799999999
Q ss_pred ccCCChHHHHHhCCCCCCCCCceeEEEEEec---CCCC----CCChHH-HH------HHHhhhccCccCC------CC--
Q 009427 256 AMGNFSPVVKQAFPAGSGPLDRTTYMFTYID---PQAG----SPKLEE-LL------ERYWDLMPEYQGV------TL-- 313 (535)
Q Consensus 256 AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~---~~~~----~~~l~~-~~------~~~~~~~P~~~~~------~~-- 313 (535)
|||.+|.++++.-.. . ..+...|.. .... .+...+ ++ +.|.|+||..... ..
T Consensus 155 ADG~~S~v~~~~g~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~~~VG~g~~~~~ 228 (398)
T TIGR02028 155 ADGANSRVAKEIDAG-D-----YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVAAK 228 (398)
T ss_pred CCCcchHHHHHhCCC-C-----cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCeEEEEEEeCCCC
Confidence 999999999875221 1 111222211 0000 011111 11 3478999976421 00
Q ss_pred Cccc-hhcc--------h---------hccccCCCCCCCC-ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427 314 DNLE-IQRV--------I---------YGIFPTYRDSPLP-AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY 374 (535)
Q Consensus 314 ~~~~-~~r~--------~---------~g~~P~~~~~pl~-~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~ 374 (535)
..+. +.+. . .+.+|.. +.+ ...+|+++||||||+++|++|+||+.||+++..+|+.+.
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~---~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~ 305 (398)
T TIGR02028 229 PEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEH---PRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIV 305 (398)
T ss_pred ccHHHHHHhhhhhhhhccCCCcEEEEEEEecccc---ccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHH
Confidence 0000 0000 0 0113321 122 236999999999999999999999999999999999999
Q ss_pred HHHhCCC--CChhchhh
Q 009427 375 EAVRGDF--VDSYSLSL 389 (535)
Q Consensus 375 ~al~~~~--~~~~~l~~ 389 (535)
++++.+. .+...|+.
T Consensus 306 ~~~~~~~~~~~~~~l~~ 322 (398)
T TIGR02028 306 EESRLGGAVTEEGDLAG 322 (398)
T ss_pred HHHhcCCCcCCHHHHHH
Confidence 9987654 34444443
No 26
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.92 E-value=1.8e-23 Score=220.22 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=108.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-------CcccccccHHHHHHHHHcCCCChHhHHHHHh-----
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-------REQEWNISRKELLELVESGILVEDDIDEATA----- 176 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-------~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~----- 176 (535)
.+||+||| ||+|+++|+.|+++|++|+|+|+.+... ..+...+++..++.|.++|+++ .+.....
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~--~~~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWS--SIVAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCch--hhhHhhCCccce
Confidence 48999999 9999999999999999999999874211 1122346788888888889854 2211100
Q ss_pred -hhcCCC--cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427 177 -TKFNPN--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (535)
Q Consensus 177 -~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l 252 (535)
..+... ...+.. ........++.+.+..|...|.+++.+. +++++.+++|++++.+++++++++++|.+++||+
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 81 LETWEHPECRTRFHS--DELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred EEEEeCCCceEEecc--cccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence 011100 111110 0000111234455667778888887664 6899999999999988889999998898999999
Q ss_pred EEEccCCChHHHHHh
Q 009427 253 IIDAMGNFSPVVKQA 267 (535)
Q Consensus 253 VV~AdG~~S~v~~~~ 267 (535)
||+|||.+|.+|++.
T Consensus 159 vIgADG~~S~vR~~~ 173 (384)
T PRK08849 159 VIGADGANSQVRQLA 173 (384)
T ss_pred EEEecCCCchhHHhc
Confidence 999999999999874
No 27
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.92 E-value=8.2e-23 Score=215.73 Aligned_cols=264 Identities=16% Similarity=0.189 Sum_probs=150.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC---CCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~---~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 185 (535)
++||+||| ||+|+++|+.|++.|++|+|+||.+.. ...+...+....++.|.++|+++ ++... .... ....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~--~l~~~-~~~~--~~~~ 76 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGE--RMDRE-GLVH--DGIE 76 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChH--HHHhc-CCcc--CcEE
Confidence 47999999 999999999999999999999998631 11222236677788888889842 22221 1000 1111
Q ss_pred ccccCcceeee-------ccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEEEEE-cCCe--EEEcCeEE
Q 009427 186 FEGKGEIWVED-------ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLL-AEGK--ILSSHLII 254 (535)
Q Consensus 186 ~~~~~~~~~~~-------~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~-~~~gv~v~~-~~G~--~i~a~lVV 254 (535)
+...+.....+ .....+++..+.+.|.+.+.+.|++++++++|++++. +++++.|++ .+|+ +++||+||
T Consensus 77 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vV 156 (392)
T PRK08243 77 LRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIA 156 (392)
T ss_pred EEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEE
Confidence 11111100000 0011234667888888888888999999999999976 556666766 3563 69999999
Q ss_pred EccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCC-CCChHH-HH----HHHhhhccCccCC-----------CCCcc-
Q 009427 255 DAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAG-SPKLEE-LL----ERYWDLMPEYQGV-----------TLDNL- 316 (535)
Q Consensus 255 ~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~-~~~l~~-~~----~~~~~~~P~~~~~-----------~~~~~- 316 (535)
+|||.+|.+|++..+... ......+.+.|...... .+...+ .+ ..+..+.|...+. ..+..
T Consensus 157 gADG~~S~vR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (392)
T PRK08243 157 GCDGFHGVSRASIPAGAL-RTFERVYPFGWLGILAEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVEDWS 235 (392)
T ss_pred ECCCCCCchhhhcCcchh-hceecccCceEEEEeCCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcccCC
Confidence 999999999988533210 00011111122111000 000000 00 0111111110000 00000
Q ss_pred --chh---cchhcc------c--cC--CCCCCC-----Ccc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427 317 --EIQ---RVIYGI------F--PT--YRDSPL-----PAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 375 (535)
Q Consensus 317 --~~~---r~~~g~------~--P~--~~~~pl-----~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~ 375 (535)
... +..++. . +. ....++ +.+ .+|++|+|||||.++|++|||+|++++|+..|++.|.+
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~ 315 (392)
T PRK08243 236 DERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVE 315 (392)
T ss_pred hhHHHHHHHHhcCcccccccccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHH
Confidence 000 000000 0 00 000011 112 48999999999999999999999999999999999988
Q ss_pred HHhC
Q 009427 376 AVRG 379 (535)
Q Consensus 376 al~~ 379 (535)
.++.
T Consensus 316 ~~~~ 319 (392)
T PRK08243 316 FYRE 319 (392)
T ss_pred Hhcc
Confidence 7754
No 28
>PRK06185 hypothetical protein; Provisional
Probab=99.92 E-value=3.4e-23 Score=219.58 Aligned_cols=276 Identities=15% Similarity=0.097 Sum_probs=158.5
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh------hhcC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA------TKFN 180 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~------~~~~ 180 (535)
.++||+||| |++|+++|+.|+++|++|+|||+.+.... .+...++...++.|.++|+++ ++..... ..+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~--~~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLE--RFLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChh--HHhhcccceeeeEEEEE
Confidence 369999999 99999999999999999999999853221 123345666777777779853 2222100 0011
Q ss_pred CC-cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE---EEEcCC-eEEEcCeEE
Q 009427 181 PN-RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV---LLLAEG-KILSSHLII 254 (535)
Q Consensus 181 ~~-~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~---v~~~~G-~~i~a~lVV 254 (535)
.+ ......-..........+.+.+..+.+.|.+++.+. |++++.+++|+++..+++++. +...+| .+++|++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI 162 (407)
T PRK06185 83 GGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVV 162 (407)
T ss_pred CCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEE
Confidence 11 010000000000011223467788889999888765 789999999999988777653 333456 479999999
Q ss_pred EccCCChHHHHHhCCCCCCCCCceeEEEEEecCC-CCCC-ChHHHH--HHHhhhccCccCC------C------CCcc--
Q 009427 255 DAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQ-AGSP-KLEELL--ERYWDLMPEYQGV------T------LDNL-- 316 (535)
Q Consensus 255 ~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~-~~~~-~l~~~~--~~~~~~~P~~~~~------~------~~~~-- 316 (535)
+|||.+|.++++....... .+.....+.+.... ...+ .....+ ++++.++|..... . ..+.
T Consensus 163 ~AdG~~S~vr~~~gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~~~~~i~~~~~~~~~~~~~~~~~ 241 (407)
T PRK06185 163 GADGRHSRVRALAGLEVRE-FGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRGDYWQCGYVIPKGGYAALRAAGL 241 (407)
T ss_pred ECCCCchHHHHHcCCCccc-cCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCCCeEEEEEEecCCCchhhhhhhH
Confidence 9999999988874222111 11111111111110 0110 000001 2233344442100 0 0000
Q ss_pred -chhcchhccc-------------------cCCCCCCCC-ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427 317 -EIQRVIYGIF-------------------PTYRDSPLP-AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 375 (535)
Q Consensus 317 -~~~r~~~g~~-------------------P~~~~~pl~-~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~ 375 (535)
.+.+.+...+ |.... ..+ ...+|++++|||||.+||++|||+|.+++|+..|++.|.+
T Consensus 242 ~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~ 320 (407)
T PRK06185 242 EAFRERVAELAPELADRVAELKSWDDVKLLDVRVD-RLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAE 320 (407)
T ss_pred HHHHHHHHHhCccHHHHHhhcCCccccEEEEEecc-ccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHH
Confidence 0000000111 11110 111 2259999999999999999999999999999999999999
Q ss_pred HHhCCCCChhchh
Q 009427 376 AVRGDFVDSYSLS 388 (535)
Q Consensus 376 al~~~~~~~~~l~ 388 (535)
+++.++.....|.
T Consensus 321 ~~~~~~~~~~~L~ 333 (407)
T PRK06185 321 PLRRGRVSDRDLA 333 (407)
T ss_pred HhccCCccHHHHH
Confidence 8866543333333
No 29
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.92 E-value=3.5e-23 Score=217.97 Aligned_cols=261 Identities=21% Similarity=0.249 Sum_probs=156.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-c-----ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCC-
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-E-----QEWNISRKELLELVESGILVEDDIDEATATKFNP- 181 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~-----~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~- 181 (535)
++||+||| ||+|+++|+.|++.|++|+|+||...... . +...++...++.|.++|+++. ++. ..+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~--~~~---~~~~~~ 79 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQA--LDA---ARLAPV 79 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhh--hhh---hcCCcc
Confidence 58999999 99999999999999999999999864321 1 112356677777777787431 211 11111
Q ss_pred Cccccccc--Cccee------eeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427 182 NRCGFEGK--GEIWV------EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (535)
Q Consensus 182 ~~~~~~~~--~~~~~------~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l 252 (535)
..+.+... ..... .....+.+++..+.+.|.+++.+.| ++++ +++|+++..+++++.|++++|.+++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 158 (388)
T PRK07608 80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL 158 (388)
T ss_pred eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence 01111100 00000 0112345788999999999998887 7888 8999999888888888888888899999
Q ss_pred EEEccCCChHHHHHhCCCCCC-CCCceeEEEEEecCCCCCCChHHHH--HHHhhhccCccCC-----C-----------C
Q 009427 253 IIDAMGNFSPVVKQAFPAGSG-PLDRTTYMFTYIDPQAGSPKLEELL--ERYWDLMPEYQGV-----T-----------L 313 (535)
Q Consensus 253 VV~AdG~~S~v~~~~~p~~~~-~~~~~~~~~~y~~~~~~~~~l~~~~--~~~~~~~P~~~~~-----~-----------~ 313 (535)
||+|||.+|.+++........ +.....+.+.+............++ +++++++|...+. . .
T Consensus 159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
T PRK07608 159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLAL 238 (388)
T ss_pred EEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHCC
Confidence 999999999988764322111 1111222222221111100000000 1122223322110 0 0
Q ss_pred Cccchhcchh-------c---------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHH
Q 009427 314 DNLEIQRVIY-------G---------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA 376 (535)
Q Consensus 314 ~~~~~~r~~~-------g---------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~a 376 (535)
..-.+...+. + .+|... ...+.+ .+|+++||||||.++|++|||+|.+++|+..|++.|...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~ 317 (388)
T PRK07608 239 SPEALAARVERASGGRLGRLECVTPAAGFPLRL-QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGR 317 (388)
T ss_pred CHHHHHHHHHHHHHHhcCCceecCCcceeecch-hhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHh
Confidence 0000000000 0 011110 111222 599999999999999999999999999999999999765
Q ss_pred H
Q 009427 377 V 377 (535)
Q Consensus 377 l 377 (535)
.
T Consensus 318 ~ 318 (388)
T PRK07608 318 E 318 (388)
T ss_pred h
Confidence 4
No 30
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.91 E-value=3.7e-24 Score=221.01 Aligned_cols=262 Identities=22% Similarity=0.266 Sum_probs=151.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHh-hhcCCCcccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA-TKFNPNRCGF 186 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~-~~~~~~~~~~ 186 (535)
++||+||| ||+|+++|+.|+++|++|+||||.+..... +...+....++.|.++|+. +++..... ... ....+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~--~~~~~~~~~~~~--~~~~~ 76 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLL--DEILARGSPHEV--MRIFF 76 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEH--HHHHHHSEEECE--EEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccch--hhhhhhcccccc--eeeEe
Confidence 38999999 999999999999999999999998643322 2234677778888888872 22222210 000 00000
Q ss_pred ccc----------C---cce---eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CC--
Q 009427 187 EGK----------G---EIW---VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG-- 245 (535)
Q Consensus 187 ~~~----------~---~~~---~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G-- 245 (535)
... . ..+ ........+++..|.+.|.+.+.+.|++++.+++|++++.+++++.+.+. +|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~ 156 (356)
T PF01494_consen 77 YDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEE 156 (356)
T ss_dssp EEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEE
T ss_pred ecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCce
Confidence 000 0 000 00111234678899999999999999999999999999988888776553 33
Q ss_pred eEEEcCeEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCC-C-Ch-H-HHH-----HHHhhhccCccC------
Q 009427 246 KILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGS-P-KL-E-ELL-----ERYWDLMPEYQG------ 310 (535)
Q Consensus 246 ~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~-~-~l-~-~~~-----~~~~~~~P~~~~------ 310 (535)
++++||+||+|||.+|.++++..+.... ....+.+.+....... . .+ . ..+ ...++++|....
T Consensus 157 ~~i~adlvVgADG~~S~vR~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 234 (356)
T PF01494_consen 157 ETIEADLVVGADGAHSKVRKQLGIDRPG--PDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFV 234 (356)
T ss_dssp EEEEESEEEE-SGTT-HHHHHTTGGEEE--EEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEE
T ss_pred eEEEEeeeecccCcccchhhhccccccC--ccccccccccccccccccccccccccccccccccceeEeeccCCccceEE
Confidence 3799999999999999999986433111 1111112211110000 0 00 0 000 111123332210
Q ss_pred --------C--CCCccchhc------chhc------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchH
Q 009427 311 --------V--TLDNLEIQR------VIYG------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGS 361 (535)
Q Consensus 311 --------~--~~~~~~~~r------~~~g------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~ 361 (535)
. ......... ..++ .+|... .....+ .+|++|||||||.++|++|||+|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~ 313 (356)
T PF01494_consen 235 WFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQ-RVADRWVKGRVLLIGDAAHAMDPFSGQGINM 313 (356)
T ss_dssp EEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEE-EEESSSEETTEEE-GGGTEEE-CCTSHHHHH
T ss_pred Eeeecccccccccccccccccccccccccccccccccccccccccccc-ccccccccceeEEeccceeeecccccCCCCc
Confidence 0 000000000 0000 011110 011122 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 009427 362 LTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 362 al~da~~La~~l~~al~ 378 (535)
||+||..|++.|...++
T Consensus 314 Ai~da~~La~~L~~~~~ 330 (356)
T PF01494_consen 314 AIEDAAALAELLAAALK 330 (356)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHhc
Confidence 99999999999998875
No 31
>PRK09126 hypothetical protein; Provisional
Probab=99.91 E-value=2e-23 Score=220.20 Aligned_cols=266 Identities=21% Similarity=0.233 Sum_probs=156.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC------cccccccHHHHHHHHHcCCCChHhHHHH-Hh-----
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEA-TA----- 176 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~------~~~~~is~~~l~~L~~lGl~~~~~~~~~-~~----- 176 (535)
++||+||| ||+|+++|+.|+++|++|+|+||...... .+...++...++.|.++|+++ .+... ..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~--~~~~~~~~~~~~~ 80 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWD--RIPEDEISPLRDA 80 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChh--hhccccCCccceE
Confidence 58999999 99999999999999999999999864320 111235566677787889743 11110 00
Q ss_pred hhcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427 177 TKFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (535)
Q Consensus 177 ~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l 252 (535)
..+... .+.+.. .........+.+++..+.+.|.+.+.+ .|++++++++|++++.+++++.|++++|++++||+
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~ 158 (392)
T PRK09126 81 KVLNGRSPFALTFDA--RGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARL 158 (392)
T ss_pred EEEcCCCCceeEeeh--hhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCE
Confidence 001110 111110 000011123446677788888888754 58999999999999887788888888888999999
Q ss_pred EEEccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCCChHHHH--HHHhhhccCccCC-------CCC---c---c
Q 009427 253 IIDAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSPKLEELL--ERYWDLMPEYQGV-------TLD---N---L 316 (535)
Q Consensus 253 VV~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~~l~~~~--~~~~~~~P~~~~~-------~~~---~---~ 316 (535)
||+|||.+|.++++........ .....+...+....+.......++ +.+++++|...+. ..+ . .
T Consensus 159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 238 (392)
T PRK09126 159 LVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLAL 238 (392)
T ss_pred EEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcC
Confidence 9999999999988752221110 011111111111101000000011 1123334433211 000 0 0
Q ss_pred ---chhc---chhc-c---cc---CCCCCCC-----Cc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427 317 ---EIQR---VIYG-I---FP---TYRDSPL-----PA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 377 (535)
Q Consensus 317 ---~~~r---~~~g-~---~P---~~~~~pl-----~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al 377 (535)
.+.+ ..+. . +. .....++ +. ..+|++++|||||.++|++|||+|.+++|+..|++.|..++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~ 318 (392)
T PRK09126 239 DPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAA 318 (392)
T ss_pred CHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHH
Confidence 0000 0010 0 00 0000111 12 25999999999999999999999999999999999999887
Q ss_pred hC
Q 009427 378 RG 379 (535)
Q Consensus 378 ~~ 379 (535)
+.
T Consensus 319 ~~ 320 (392)
T PRK09126 319 RR 320 (392)
T ss_pred hc
Confidence 53
No 32
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.91 E-value=5.2e-23 Score=216.15 Aligned_cols=260 Identities=20% Similarity=0.218 Sum_probs=156.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCCc-----ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcc
Q 009427 112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGRE-----QEWNISRKELLELVESGILVEDDIDEATATKFNPNRC 184 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~~-----~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~ 184 (535)
||+||| ||+|+++|+.|+++| ++|+|+||.+..... +...++...++.|.++|+.+ .+... . +.....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~--~~~~~-~--~~~~~~ 75 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWP--KLAPF-A--TPILDI 75 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChh--hhHhh-c--CccceE
Confidence 899999 999999999999999 999999998643221 22346667777888889843 22211 0 000011
Q ss_pred ccccc---Cc------ceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEE
Q 009427 185 GFEGK---GE------IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (535)
Q Consensus 185 ~~~~~---~~------~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV 254 (535)
.+... +. .+......+.+++..|.+.|.+.+.+. |++++.+++|++++.+++++++++++|.+++||+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV 155 (382)
T TIGR01984 76 HVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLI 155 (382)
T ss_pred EEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEE
Confidence 11000 00 000111235688999999999999884 899999999999988888888888888889999999
Q ss_pred EccCCChHHHHHhCCCCCCCCC-ceeEEEEEecCCCCCC-ChHHHH-HHHhhhccCccC-C----------------CCC
Q 009427 255 DAMGNFSPVVKQAFPAGSGPLD-RTTYMFTYIDPQAGSP-KLEELL-ERYWDLMPEYQG-V----------------TLD 314 (535)
Q Consensus 255 ~AdG~~S~v~~~~~p~~~~~~~-~~~~~~~y~~~~~~~~-~l~~~~-~~~~~~~P~~~~-~----------------~~~ 314 (535)
+|||.+|.++++.......... ...+.+.+....+... ....+. ++.+.++|...+ . ..+
T Consensus 156 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
T TIGR01984 156 AADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLP 235 (382)
T ss_pred EecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCC
Confidence 9999999988875322111100 1111111111001000 000000 111222232111 0 000
Q ss_pred ccchhc---chhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427 315 NLEIQR---VIYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 377 (535)
Q Consensus 315 ~~~~~r---~~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al 377 (535)
...+.. ..++ ..|... ...+.+ .+|++++|||||.++|++|||+|.+++||..|+++|....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~ 314 (382)
T TIGR01984 236 DAEFLAELQQAFGWRLGKITQVGERKTYPLKL-RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDAR 314 (382)
T ss_pred HHHHHHHHHHHHhhhccCeEEcCCccEeecch-hhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhc
Confidence 000000 0000 011110 011222 4899999999999999999999999999999999997764
No 33
>PRK06184 hypothetical protein; Provisional
Probab=99.91 E-value=9.4e-23 Score=222.07 Aligned_cols=268 Identities=16% Similarity=0.137 Sum_probs=157.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN 182 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~ 182 (535)
++||+||| ||+|+++|+.|+++|++|+||||.+... ..+...++...++.|.++|+.+ ++.+... ..|.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~--~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLD--RVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHH--HHHhcCccccceeEEeCC
Confidence 58999999 9999999999999999999999985332 2233346777888888889732 2221100 111111
Q ss_pred -cc-cccccC--c--ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE---cCCeEEEcCeE
Q 009427 183 -RC-GFEGKG--E--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLI 253 (535)
Q Consensus 183 -~~-~~~~~~--~--~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~---~~G~~i~a~lV 253 (535)
.+ .+.... . ..........+++..+.+.|.+.+.+.|++++.+++|++++.+++++++++ .++++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYL 160 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEE
Confidence 00 000000 0 000001123466778889999999888999999999999988888888776 45578999999
Q ss_pred EEccCCChHHHHHhCCCCCCCC-Cc-eeEEEEEecCCCCCCChHHHHH---HHhhhccCcc--------------CCCCC
Q 009427 254 IDAMGNFSPVVKQAFPAGSGPL-DR-TTYMFTYIDPQAGSPKLEELLE---RYWDLMPEYQ--------------GVTLD 314 (535)
Q Consensus 254 V~AdG~~S~v~~~~~p~~~~~~-~~-~~~~~~y~~~~~~~~~l~~~~~---~~~~~~P~~~--------------~~~~~ 314 (535)
|+|||++|.+++++-....+.. .. ..+................+.. ..+.++|... ....+
T Consensus 161 VgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 240 (502)
T PRK06184 161 VGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGEPDLS 240 (502)
T ss_pred EECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCccCCCC
Confidence 9999999999887422211111 11 1111111100000000000000 1111122110 00000
Q ss_pred ccchhcc---hhcccc----------CCCC-CC-CCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427 315 NLEIQRV---IYGIFP----------TYRD-SP-LPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 315 ~~~~~r~---~~g~~P----------~~~~-~p-l~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~ 378 (535)
.-.+.+. ..+..+ .+.. .. .+.+ .+|++|+|||||.++|+.|||+|++++||..|+++|+..++
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~ 320 (502)
T PRK06184 241 ADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLA 320 (502)
T ss_pred HHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHc
Confidence 0000110 011000 0000 00 0122 49999999999999999999999999999999999998776
Q ss_pred C
Q 009427 379 G 379 (535)
Q Consensus 379 ~ 379 (535)
.
T Consensus 321 g 321 (502)
T PRK06184 321 G 321 (502)
T ss_pred C
Confidence 4
No 34
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.91 E-value=9.3e-23 Score=217.51 Aligned_cols=284 Identities=17% Similarity=0.196 Sum_probs=162.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccc-c-cccHHHHHHHHHcCCCChHhHHHHHhh----hcCC-
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE-W-NISRKELLELVESGILVEDDIDEATAT----KFNP- 181 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~-~-~is~~~l~~L~~lGl~~~~~~~~~~~~----~~~~- 181 (535)
+||||||| ||+|+++|+.|+++|++|+||||...++.... . .+..+.++.+.. .+.....++..+.. .+.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccceeeeeeEEEEcCC
Confidence 69999999 99999999999999999999999876543221 1 133344444311 00000001111100 0011
Q ss_pred Cccccccc-CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 182 NRCGFEGK-GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 182 ~~~~~~~~-~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
+...+... ..........+.+++..|.+.|.+.+.+.|++++.+++|+++..+++.+++...+|.+++|++||+|||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 11111100 00011112245678999999999999999999999999999987776665444567789999999999999
Q ss_pred hHHHHHhCCCCCCCCCceeEEEEEecCCCCCCC-hHH---------------------HHHHHhhhccCccCC------C
Q 009427 261 SPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPK-LEE---------------------LLERYWDLMPEYQGV------T 312 (535)
Q Consensus 261 S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~-l~~---------------------~~~~~~~~~P~~~~~------~ 312 (535)
|.++++. ..... .+...+.+.+.......+. +.. ++. +.|+.+..... .
T Consensus 164 s~l~~~l-gl~~~-~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~g-gG~~~~~~~~~svG~~~~ 240 (428)
T PRK10157 164 SILAEKL-GMAKR-VKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMG-GGFLYTNENTLSLGLVCG 240 (428)
T ss_pred HHHHHHc-CCCCC-CCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcC-ceeEEEcCCeEEEEEEEe
Confidence 9888763 21110 1111222222111000000 000 000 11222221110 0
Q ss_pred CC--------------ccchh---cc----------hhccccCCCCCCCC-ccCCCeeEeecCCCcccc--cccccchHH
Q 009427 313 LD--------------NLEIQ---RV----------IYGIFPTYRDSPLP-AAFNRILQFGDASGIQSP--VSFGGFGSL 362 (535)
Q Consensus 313 ~~--------------~~~~~---r~----------~~g~~P~~~~~pl~-~~~~rvlliGDAA~~~~P--~~G~Gi~~a 362 (535)
.+ .+... ++ ....+|.......+ ...++++++||||++++| ++|+||+.|
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A 320 (428)
T PRK10157 241 LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLA 320 (428)
T ss_pred hHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHH
Confidence 00 00000 00 00123432211122 236999999999999998 599999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhh
Q 009427 363 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSAS 400 (535)
Q Consensus 363 l~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~ 400 (535)
+.++..+|+.+.++++.++.+...|+. |++.+...
T Consensus 321 ~~SG~lAAeai~~a~~~~~~s~~~l~~---Y~~~l~~~ 355 (428)
T PRK10157 321 IAAGEAAAKTVLSAMKSDDFSKQKLAE---YRQHLESG 355 (428)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhhHHH---HHHHHHHh
Confidence 999999999999999877776666554 45444433
No 35
>PRK06996 hypothetical protein; Provisional
Probab=99.91 E-value=5.3e-23 Score=217.59 Aligned_cols=264 Identities=17% Similarity=0.165 Sum_probs=155.7
Q ss_pred CCCcccEEEEc-chHHHHHHHHHHHCC----CcEEEEcccCCCC---CcccccccHHHHHHHHHcCCCChHhHHHHHh--
Q 009427 107 AVGTFDVIVCG-GTLGIFIATALSFKG----LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATA-- 176 (535)
Q Consensus 107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G----~~V~liEr~~~~~---~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-- 176 (535)
.+.++||+||| ||+|+++|+.|+++| ++|+|+|+.+... ..+...++...++.|.++|+++.. ...+.
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~--~~~~~~~ 85 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPAD--ATPIEHI 85 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhc--CCcccEE
Confidence 34469999999 999999999999997 4799999985322 123344677788888888986521 00011
Q ss_pred hhcCC---CcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEc
Q 009427 177 TKFNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSS 250 (535)
Q Consensus 177 ~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a 250 (535)
..+.. +...+.... +..+...+.+++..|.+.|.+++.+.|++++.++++++++.+++++++++.++ ++++|
T Consensus 86 ~~~~~~~~g~~~~~~~~--~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a 163 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDD--HDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRA 163 (398)
T ss_pred EEecCCCCceEEecccc--cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEee
Confidence 01110 111111110 11122355688899999999999999999999999999988888999888654 58999
Q ss_pred CeEEEccCC-ChHHHHHhCCCCCCCCC-ceeEEEEEecCCCCCC-ChHHH-HHHHhhhccCccC----C-----------
Q 009427 251 HLIIDAMGN-FSPVVKQAFPAGSGPLD-RTTYMFTYIDPQAGSP-KLEEL-LERYWDLMPEYQG----V----------- 311 (535)
Q Consensus 251 ~lVV~AdG~-~S~v~~~~~p~~~~~~~-~~~~~~~y~~~~~~~~-~l~~~-~~~~~~~~P~~~~----~----------- 311 (535)
|+||+|||. +|.+++........... ...+.+......+... ....+ ..+.+.++|...+ .
T Consensus 164 ~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~ 243 (398)
T PRK06996 164 RIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEA 243 (398)
T ss_pred eEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHH
Confidence 999999996 56666654332111111 1111111110000000 00000 0111222222110 0
Q ss_pred ----CCCccchhc---chhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427 312 ----TLDNLEIQR---VIYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 370 (535)
Q Consensus 312 ----~~~~~~~~r---~~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La 370 (535)
..+...+.. ..++ .+|... ...+.+ .+|++++|||||.++|+.|||+|.+++||..|+
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La 322 (398)
T PRK06996 244 ARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLGL-NAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLA 322 (398)
T ss_pred HHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeeec-ccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHH
Confidence 000000000 0111 011111 011222 499999999999999999999999999999999
Q ss_pred HHHHH
Q 009427 371 TGVYE 375 (535)
Q Consensus 371 ~~l~~ 375 (535)
++|..
T Consensus 323 ~~L~~ 327 (398)
T PRK06996 323 DALSD 327 (398)
T ss_pred HHHHh
Confidence 99854
No 36
>PRK07045 putative monooxygenase; Reviewed
Probab=99.91 E-value=3.8e-23 Score=217.89 Aligned_cols=264 Identities=15% Similarity=0.150 Sum_probs=153.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh------hhcCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA------TKFNP 181 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~------~~~~~ 181 (535)
++||+||| ||+|+++|+.|+++|++|+|+||.+.... .....+++..++.|.++|+++ .+..... ..+..
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~--~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLD--DVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHH--HHHhcccccccceEEecC
Confidence 68999999 99999999999999999999999864321 111125556667777779743 1111100 11111
Q ss_pred Ccc-c-ccccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE--EEEEcCCeEEEcCeEEEc
Q 009427 182 NRC-G-FEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDA 256 (535)
Q Consensus 182 ~~~-~-~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv--~v~~~~G~~i~a~lVV~A 256 (535)
+.. . +.... .........+++..|.+.|.+++.+ .|++++.+++|++++.+++++ .|++++|+++++|+||+|
T Consensus 83 g~~~~~~~~~~--~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA 160 (388)
T PRK07045 83 KELIASLDYRS--ASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred CcEEEEecCCc--cccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence 110 0 00000 0000001236778899999998865 478999999999998876663 567778889999999999
Q ss_pred cCCChHHHHHhCCCC-CCCCCceeEEEEEecCCCCCCCh-HHHH---HHHhhhccCccCC-------C-------CCcc-
Q 009427 257 MGNFSPVVKQAFPAG-SGPLDRTTYMFTYIDPQAGSPKL-EELL---ERYWDLMPEYQGV-------T-------LDNL- 316 (535)
Q Consensus 257 dG~~S~v~~~~~p~~-~~~~~~~~~~~~y~~~~~~~~~l-~~~~---~~~~~~~P~~~~~-------~-------~~~~- 316 (535)
||.+|.+|++.++.. ..+.......+.+.......+.. ..++ ..+.+.+|..... . ....
T Consensus 161 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T PRK07045 161 DGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTT 240 (388)
T ss_pred CCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCC
Confidence 999999999765321 11111111122221110100000 0001 1122233322110 0 0000
Q ss_pred --chhcchhc--------------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHH
Q 009427 317 --EIQRVIYG--------------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 373 (535)
Q Consensus 317 --~~~r~~~g--------------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l 373 (535)
.+.+.+.. .+|... ...+.+ .+|+++||||||.++|++|||+|.+++|+..|++.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L 319 (388)
T PRK07045 241 RTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGR-MNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACL 319 (388)
T ss_pred HHHHHHHHhhhcCccchHHHhccCcccccceeecCc-cccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHH
Confidence 00000000 011111 112222 599999999999999999999999999999999999
Q ss_pred HHHHh
Q 009427 374 YEAVR 378 (535)
Q Consensus 374 ~~al~ 378 (535)
..++.
T Consensus 320 ~~~~~ 324 (388)
T PRK07045 320 DLHLS 324 (388)
T ss_pred HhhcC
Confidence 87654
No 37
>PRK08244 hypothetical protein; Provisional
Probab=99.91 E-value=1.3e-22 Score=220.57 Aligned_cols=262 Identities=22% Similarity=0.285 Sum_probs=158.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh----hhcCC--
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA----TKFNP-- 181 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~----~~~~~-- 181 (535)
++||+||| ||+|+++|+.|+++|++|+||||.+.... .+...++...++.|.++|+.+ ++...-. ..+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~--~l~~~~~~~~~~~~~~~~ 79 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLE--RFLEKGRKLPSGHFAGLD 79 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHH--HHHhhcccccceEEeccc
Confidence 48999999 99999999999999999999999864322 233346777888888889842 2222110 00100
Q ss_pred CcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC-eEEEcCeEEEccC
Q 009427 182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMG 258 (535)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~--~G-~~i~a~lVV~AdG 258 (535)
....+.... ......+.+++..+.+.|.+.+.+.|++++.+++|++++.+++++++++. +| ++++||+||+|||
T Consensus 80 ~~~~~~~~~---~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG 156 (493)
T PRK08244 80 TRLDFSALD---TSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADG 156 (493)
T ss_pred ccCCcccCC---CCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCC
Confidence 001111000 00111234677888999999998889999999999999888888877664 45 4799999999999
Q ss_pred CChHHHHHh---CCCCCCCCCceeEEEEEecCCCCCCChHHHH--HHHhhhccCccCC-------------C-CCccc--
Q 009427 259 NFSPVVKQA---FPAGSGPLDRTTYMFTYIDPQAGSPKLEELL--ERYWDLMPEYQGV-------------T-LDNLE-- 317 (535)
Q Consensus 259 ~~S~v~~~~---~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~--~~~~~~~P~~~~~-------------~-~~~~~-- 317 (535)
.+|.++++. ++... .....+...+....+........+ +++++++|...+. . .....
T Consensus 157 ~~S~vR~~lgi~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (493)
T PRK08244 157 AGSIVRKQAGIAFPGTD--ATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLE 234 (493)
T ss_pred CChHHHHhcCCCccCCC--cceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHH
Confidence 999998874 22211 111111111111101000000000 1223333332110 0 00000
Q ss_pred -hhc---chhcc-----ccCCCC-CCC-----Ccc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427 318 -IQR---VIYGI-----FPTYRD-SPL-----PAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 318 -~~r---~~~g~-----~P~~~~-~pl-----~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~ 378 (535)
+.+ ..++. .|.+.. .+. +.+ .+|++|+|||||.++|+.|||+|++|+||..|+++|+..++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~ 311 (493)
T PRK08244 235 ELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK 311 (493)
T ss_pred HHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHc
Confidence 000 01110 011100 010 122 48999999999999999999999999999999999998885
No 38
>PRK07190 hypothetical protein; Provisional
Probab=99.91 E-value=2.3e-22 Score=217.49 Aligned_cols=267 Identities=15% Similarity=0.117 Sum_probs=156.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN 182 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~ 182 (535)
.+||+||| ||+|+++|+.|+++|++|+||||.+.... .+...+....++.|..+|+++ .+..... ..|.++
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~--~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFD--ELYPLGKPCNTSSVWANG 82 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHH--HHHhhCccceeEEEecCC
Confidence 58999999 99999999999999999999999864321 222236677788887778732 1111100 111111
Q ss_pred ccccccc---Ccc-eeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427 183 RCGFEGK---GEI-WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 183 ~~~~~~~---~~~-~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG 258 (535)
....... ... .........+....+.+.|.+++.+.|++++.+++|++++.+++++++.+.+|++++|++||+|||
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCC
Confidence 1000000 000 000011123566778888989998899999999999999988888888877788899999999999
Q ss_pred CChHHHHHh-CCCCCCCCCceeEEEE-E--ecCCCCCCChHHH--HHHHhhhccCccCC-------CCCccch-------
Q 009427 259 NFSPVVKQA-FPAGSGPLDRTTYMFT-Y--IDPQAGSPKLEEL--LERYWDLMPEYQGV-------TLDNLEI------- 318 (535)
Q Consensus 259 ~~S~v~~~~-~p~~~~~~~~~~~~~~-y--~~~~~~~~~l~~~--~~~~~~~~P~~~~~-------~~~~~~~------- 318 (535)
.+|.++++. ++. .+......+... . ....+..+....+ ..+.+.++|...+. ..+.+..
T Consensus 163 ~~S~vR~~lgi~f-~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~~~~~t~~~~~~~l 241 (487)
T PRK07190 163 SRSFVRNHFNVPF-EIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMDTKDFTLEQAIAKI 241 (487)
T ss_pred CCHHHHHHcCCCc-cccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcCCCCCCHHHHHHHH
Confidence 999999873 221 110011111111 1 1000110100000 01111122322110 0001110
Q ss_pred hcchhcc------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427 319 QRVIYGI------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 379 (535)
Q Consensus 319 ~r~~~g~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~ 379 (535)
.+.+.+. ++.......... .+||+|+|||||.++|..|||||++++||.+|+++|+..++.
T Consensus 242 ~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g 315 (487)
T PRK07190 242 NHAMQPHRLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHH 315 (487)
T ss_pred HHhcCCCCCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcC
Confidence 0101010 111110000122 499999999999999999999999999999999999987764
No 39
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.90 E-value=2.5e-22 Score=202.48 Aligned_cols=253 Identities=23% Similarity=0.263 Sum_probs=147.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHh-hhcCCCccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA-TKFNPNRCGFE 187 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~-~~~~~~~~~~~ 187 (535)
|||+||| |++|+++|+.|++.|++|+||||....+.. ....+....++.+ +............ ..+....-..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~- 76 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEEL---DLPLELIVNLVRGARFFSPNGDSV- 76 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHh---cCCchhhhhheeeEEEEcCCCcEE-
Confidence 6999999 999999999999999999999998644321 1122444555544 3211111100000 0011100000
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CeEEEcCeEEEccCCChHHHHH
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~-G~~i~a~lVV~AdG~~S~v~~~ 266 (535)
.........+.+++..+.+.|.+.+.+.|++++.+++|+++..+++++.+.+.+ +.+++||+||+|||.+|.++++
T Consensus 77 ---~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~ 153 (295)
T TIGR02032 77 ---EIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKK 153 (295)
T ss_pred ---EeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHh
Confidence 000011123457889999999999999999999999999998888887776654 4679999999999999988775
Q ss_pred hCCCCCCCCCc-eeEEEEEecCC-CCCCC-hHHHH------HHHhhhccCccCC-------C------------------
Q 009427 267 AFPAGSGPLDR-TTYMFTYIDPQ-AGSPK-LEELL------ERYWDLMPEYQGV-------T------------------ 312 (535)
Q Consensus 267 ~~p~~~~~~~~-~~~~~~y~~~~-~~~~~-l~~~~------~~~~~~~P~~~~~-------~------------------ 312 (535)
. +....+... ..+...+.... ...+. +.-++ ..|.|++|...+. .
T Consensus 154 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 232 (295)
T TIGR02032 154 L-GLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAEEGEDLKKYLKDFLAR 232 (295)
T ss_pred c-CCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCCCCCCHHHHHHHHHHh
Confidence 3 221110001 11111111110 00010 00000 2445556643220 0
Q ss_pred ---CCccchhcchhccccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHH
Q 009427 313 ---LDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 373 (535)
Q Consensus 313 ---~~~~~~~r~~~g~~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l 373 (535)
+++....+.....+|... +... ..+|++++|||||+++|++|||++.+++||..+|++|
T Consensus 233 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 233 RPELKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CcccccCcEEeeeceeeccCC--CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 000000000111122221 2222 3699999999999999999999999999999888753
No 40
>PRK07588 hypothetical protein; Provisional
Probab=99.90 E-value=5.8e-22 Score=209.11 Aligned_cols=258 Identities=15% Similarity=0.041 Sum_probs=149.4
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc-
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~- 188 (535)
||+||| ||+|+++|+.|+++|++|+|+||.+.... ...+.++...++.|.++|+++ .+... .+....+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~--~l~~~---~~~~~~~~~~~~ 76 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITD--QLREA---GYQIEHVRSVDP 76 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHH--HHHhc---cCCccceEEEcC
Confidence 799999 99999999999999999999999853221 122334445566677778732 22211 11101111110
Q ss_pred cCcc--------eeee--ccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427 189 KGEI--------WVED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 189 ~~~~--------~~~~--~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG 258 (535)
.+.. +... ...+.+++..|.+.|.+.+ ..+++++++++|++++.++++++|++++|+++++|+||+|||
T Consensus 77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG 155 (391)
T PRK07588 77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG 155 (391)
T ss_pred CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence 0100 0000 0113567888888887755 447899999999999888888989988898899999999999
Q ss_pred CChHHHHHhCCCCCCCCCceeEEEEEecC---CCCCCChHHHH---HHHhhhccCccC--------------CCCCccch
Q 009427 259 NFSPVVKQAFPAGSGPLDRTTYMFTYIDP---QAGSPKLEELL---ERYWDLMPEYQG--------------VTLDNLEI 318 (535)
Q Consensus 259 ~~S~v~~~~~p~~~~~~~~~~~~~~y~~~---~~~~~~l~~~~---~~~~~~~P~~~~--------------~~~~~~~~ 318 (535)
.+|.+|+..++............+..... .+........+ +.++..+|...+ ........
T Consensus 156 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
T PRK07588 156 LHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEE 235 (391)
T ss_pred CCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHH
Confidence 99999998654321100111111111110 00000000000 111112221110 00000000
Q ss_pred ---hcchh-----------ccccCC--------CCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427 319 ---QRVIY-----------GIFPTY--------RDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE 375 (535)
Q Consensus 319 ---~r~~~-----------g~~P~~--------~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~ 375 (535)
.+..+ ..++.. ...+.+.+ .+|++++|||||.++|+.|||+|.+++||..|++.|..
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~ 315 (391)
T PRK07588 236 KQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELAR 315 (391)
T ss_pred HHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHh
Confidence 00000 011100 00122233 49999999999999999999999999999999999864
No 41
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.90 E-value=3e-22 Score=210.00 Aligned_cols=312 Identities=21% Similarity=0.347 Sum_probs=188.9
Q ss_pred cEEEEc-chHHHHHHHHH--HHCCCcEEEEcccCCC--CCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427 112 DVIVCG-GTLGIFIATAL--SFKGLRVAIVERNTLK--GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~L--Ar~G~~V~liEr~~~~--~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~ 186 (535)
|||||| ||||+++|+.| ++.|.+|+|||+.... ..++.|......+. .++.++.+.|+...+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~-----------~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLG-----------PLDSLVSHRWSGWRVYF 69 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccccc-----------chHHHHheecCceEEEe
Confidence 899999 99999999999 8889999999998644 33445543222111 13455556665333333
Q ss_pred cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH--
Q 009427 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV-- 264 (535)
Q Consensus 187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~-- 264 (535)
.... ..........+++..|.+.|.+++. .++.++.+++|++|+.+++++.+.+++|.+++|++||||+|..+...
T Consensus 70 ~~~~-~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~ 147 (374)
T PF05834_consen 70 PDGS-RILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARP 147 (374)
T ss_pred CCCc-eEEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccc
Confidence 2221 1111222346899999999999998 56677788999999888888888888999999999999999765421
Q ss_pred --HHhCCC----CCCC-CC-ceeEEEEEecCCC-CCCChHHHHHHHhhhccCccCC------------------------
Q 009427 265 --KQAFPA----GSGP-LD-RTTYMFTYIDPQA-GSPKLEELLERYWDLMPEYQGV------------------------ 311 (535)
Q Consensus 265 --~~~~p~----~~~~-~~-~~~~~~~y~~~~~-~~~~l~~~~~~~~~~~P~~~~~------------------------ 311 (535)
.|.|-+ .+.| .+ .+..++.|+.... .. ..|++++|...+.
T Consensus 148 ~~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~-------~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~ 220 (374)
T PF05834_consen 148 LGLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADG-------PSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLR 220 (374)
T ss_pred cccceeEEEEEeccCCCCCCCceEEEEecccCCCCC-------ceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHH
Confidence 121100 0001 11 1122223322111 01 1344444443210
Q ss_pred ------CCCccchhcchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChh
Q 009427 312 ------TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSY 385 (535)
Q Consensus 312 ------~~~~~~~~r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~ 385 (535)
..+..++.+...|.||+....+.+..+++++.||+|+++++|.||+++..+++.+..+|+.+.+. + ....
T Consensus 221 ~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~---~-~~~~ 296 (374)
T PF05834_consen 221 RYLERLGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKG---G-APLR 296 (374)
T ss_pred HHHHHcCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhc---c-cccc
Confidence 01112222345588998543345556788999999999999999999998888888777766542 1 1111
Q ss_pred chhhhCCCCchhhhhHHHHHhh---hhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhhcCcchHHHHH
Q 009427 386 SLSLLNPYMPNLSASWLFQRAM---SAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTL 456 (535)
Q Consensus 386 ~l~~l~~y~~~~~~~~~~~~~m---~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~~~~~~l~~~~ 456 (535)
. ..++.+ ...|....++ ........++.. ...||..|.++|++....|+....++.+..+++
T Consensus 297 ~---~~~~~~--~~~~~~~~flr~l~~~~l~~~~~~~----~~~f~~~f~~l~~~~~~~FL~~~~~~~~~~~i~ 361 (374)
T PF05834_consen 297 A---WSPLWP--RERWRDRRFLRVLGLEVLLRLPPDG----RRIFFRMFFRLPPDRIARFLSERSSLADDLRIM 361 (374)
T ss_pred c---cccccH--HHHHHHHHHHHHhcchhhcccChhH----HHHHHHHHhCCCHHHHHhHhcCCCCHHHHHHHH
Confidence 1 111111 0111111111 111112223333 466777778899999999999998887776665
No 42
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.90 E-value=1e-21 Score=207.27 Aligned_cols=267 Identities=18% Similarity=0.212 Sum_probs=154.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHC---CCcEEEEcccC-CCC---C--cccccccHHHHHHHHHcCCCChHhHHHHHh--h
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK---GLRVAIVERNT-LKG---R--EQEWNISRKELLELVESGILVEDDIDEATA--T 177 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~-~~~---~--~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--~ 177 (535)
.+||+||| ||+|+++|+.|+++ |++|+|+||.. ... . .+...++...++.|.++|+++ ++..... .
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~--~~~~~~~~~~ 80 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQ--ALADCATPIT 80 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChh--hhHhhcCCcc
Confidence 58999999 99999999999998 99999999952 211 0 122345666677777789853 2222110 0
Q ss_pred --hc-CCCccc-ccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427 178 --KF-NPNRCG-FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (535)
Q Consensus 178 --~~-~~~~~~-~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l 252 (535)
.+ ..+... .......+......+.+++..+.+.|.+.+.+. |++++.+++|+++..+++++.+++++|.+++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 00 001000 000000000111224567778888888888764 7899999999999887888888888888899999
Q ss_pred EEEccCCChHHHHHhCCCCCCCCCceeEEE-EEecCCC-CCCChHHHH-HHHhhhccCccCC----------------CC
Q 009427 253 IIDAMGNFSPVVKQAFPAGSGPLDRTTYMF-TYIDPQA-GSPKLEELL-ERYWDLMPEYQGV----------------TL 313 (535)
Q Consensus 253 VV~AdG~~S~v~~~~~p~~~~~~~~~~~~~-~y~~~~~-~~~~l~~~~-~~~~~~~P~~~~~----------------~~ 313 (535)
||+|||.+|.+++..............+.. .+..... ....+..+. .+.+.++|...+. ..
T Consensus 161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~ 240 (395)
T PRK05732 161 LVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSW 240 (395)
T ss_pred EEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcC
Confidence 999999999988874222111000111111 1110000 000000000 1111122221110 00
Q ss_pred Cccchh---cchhcc-------------ccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHH
Q 009427 314 DNLEIQ---RVIYGI-------------FPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA 376 (535)
Q Consensus 314 ~~~~~~---r~~~g~-------------~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~a 376 (535)
+...+. +..++. .|... ...+. ..+|++++|||||.++|++|||+|.+++||..|+++|...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~ 319 (395)
T PRK05732 241 SDAQFLAELQQAFGWRLGRITHAGKRSAYPLAL-VTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQA 319 (395)
T ss_pred CHHHHHHHHHHHHHhhhcceeecCCcceecccc-cchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHH
Confidence 000000 000110 01100 01112 2599999999999999999999999999999999999887
Q ss_pred HhC
Q 009427 377 VRG 379 (535)
Q Consensus 377 l~~ 379 (535)
++.
T Consensus 320 ~~~ 322 (395)
T PRK05732 320 LAR 322 (395)
T ss_pred Hhc
Confidence 754
No 43
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.89 E-value=2e-21 Score=204.96 Aligned_cols=154 Identities=13% Similarity=0.123 Sum_probs=101.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC---CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~---~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 185 (535)
.+||+||| ||+|+++|+.|+++|++|+||||.+... ..+...++...++.|.++|+++ ++... .+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~--~l~~~---~~~~~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDE--RMDRE---GLVHEGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChH--HHHhc---CceecceE
Confidence 47999999 9999999999999999999999986321 1122336667788888889842 22221 11101111
Q ss_pred ccccCcceee---ec---cc-cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEEEEEc-CCe--EEEcCeEE
Q 009427 186 FEGKGEIWVE---DI---LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLII 254 (535)
Q Consensus 186 ~~~~~~~~~~---~~---~~-~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~-~~~gv~v~~~-~G~--~i~a~lVV 254 (535)
+...+..... .. .. .......+.+.|.+++.+.|+.++++++++.+.. +++++.|++. +|+ +++||+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI 156 (390)
T TIGR02360 77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA 156 (390)
T ss_pred EeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence 1111100000 00 00 0123467778888888888999999988887754 4456666664 674 69999999
Q ss_pred EccCCChHHHHHhC
Q 009427 255 DAMGNFSPVVKQAF 268 (535)
Q Consensus 255 ~AdG~~S~v~~~~~ 268 (535)
+|||.+|.+|++..
T Consensus 157 GADG~~S~VR~~l~ 170 (390)
T TIGR02360 157 GCDGFHGVSRASIP 170 (390)
T ss_pred ECCCCchhhHHhcC
Confidence 99999999999853
No 44
>PRK05868 hypothetical protein; Validated
Probab=99.89 E-value=8.8e-22 Score=206.42 Aligned_cols=157 Identities=18% Similarity=0.133 Sum_probs=106.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC-
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN- 182 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~- 182 (535)
.||+||| ||+|+++|+.|+++|++|+|+||.+..... ....++...++.|.++|+++ .+..... ..+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~--~~~~~~~~~~~~~~~~~~g 79 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLA--AAQEHKTRIRGASFVDRDG 79 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHH--HHHhhccCccceEEEeCCC
Confidence 4899999 999999999999999999999998643221 12234556677777789742 2222110 011111
Q ss_pred cc-cccccC--cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 183 RC-GFEGKG--EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 183 ~~-~~~~~~--~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
.. ...... ..+......+.+.+..|.+.|.+. ...|++++++++|++++.+++++++++++|.+++||+||+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 80 NELFRDTESTPTGGPVNSPDIELLRDDLVELLYGA-TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CEEeecccccccCCCCCCceEEEEHHHHHHHHHHh-ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 10 000000 001111112346677888776553 35689999999999998878889999989989999999999999
Q ss_pred ChHHHHHhCCC
Q 009427 260 FSPVVKQAFPA 270 (535)
Q Consensus 260 ~S~v~~~~~p~ 270 (535)
+|.+|++.++.
T Consensus 159 ~S~vR~~~~~~ 169 (372)
T PRK05868 159 HSNVRRLVFGP 169 (372)
T ss_pred CchHHHHhcCC
Confidence 99999997654
No 45
>PRK06847 hypothetical protein; Provisional
Probab=99.89 E-value=2.3e-21 Score=203.18 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=110.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
..||+||| ||+|+++|+.|++.|++|+|+|+....... ....++...++.|.++|+++ .+.. ..+......+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~--~~~~---~~~~~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLD--ECLE---AGFGFDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHH--HHHH---hCCCccceEEE
Confidence 57999999 999999999999999999999998532211 11235566677777778732 1111 11111111110
Q ss_pred c-cCcc---------eeee-ccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEc
Q 009427 188 G-KGEI---------WVED-ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (535)
Q Consensus 188 ~-~~~~---------~~~~-~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~A 256 (535)
. .+.. .... .....+++..+.+.|.+.+.+.|++++.+++|++++.+++++.+.+.+|+++.||+||+|
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A 158 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA 158 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence 0 0100 0000 112457888999999999988899999999999998877888888888888999999999
Q ss_pred cCCChHHHHHhCCC
Q 009427 257 MGNFSPVVKQAFPA 270 (535)
Q Consensus 257 dG~~S~v~~~~~p~ 270 (535)
||.+|.++++.++.
T Consensus 159 dG~~s~~r~~l~~~ 172 (375)
T PRK06847 159 DGLYSKVRSLVFPD 172 (375)
T ss_pred cCCCcchhhHhcCC
Confidence 99999999887665
No 46
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.89 E-value=1.3e-21 Score=215.26 Aligned_cols=278 Identities=15% Similarity=0.134 Sum_probs=158.5
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC-CCCcccccccHHHHHHHHHcCCCChHhHHHH-Hh----hhcCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEA-TA----TKFNP 181 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~-~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~-~~----~~~~~ 181 (535)
.++||+||| ||+|+++|+.|+++|++|+||||.+. ....+...++...++.|.++|+.+ ++... .. ..+..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~--~l~~~~~~~~~~~~~~~ 99 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGE--RMVDKGVSWNVGKVFLR 99 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcH--HHHhhCceeeceeEEeC
Confidence 468999999 99999999999999999999999862 223344557778888888889842 22111 00 01111
Q ss_pred C-c-ccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc--CCe-EEEcCeEEE
Q 009427 182 N-R-CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLIID 255 (535)
Q Consensus 182 ~-~-~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~--~G~-~i~a~lVV~ 255 (535)
. . ..+...............++...+.+.|.+++.+. +++++.+++|++++.+++++++++. +|. +++||+||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg 179 (547)
T PRK08132 100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA 179 (547)
T ss_pred CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence 1 0 00100000000000112356778889999988876 6899999999999888888876653 443 699999999
Q ss_pred ccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCCh-HHHH------HHHhhhccCccC-----------CC----C
Q 009427 256 AMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKL-EELL------ERYWDLMPEYQG-----------VT----L 313 (535)
Q Consensus 256 AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~------~~~~~~~P~~~~-----------~~----~ 313 (535)
|||.+|.+++.+.....+......+.+.........+.. ..++ ..+..+.|...+ .. .
T Consensus 180 ADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (547)
T PRK08132 180 CDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPEAEK 259 (547)
T ss_pred CCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCchhhc
Confidence 999999998874322122111111111100000000000 0000 001111111100 00 0
Q ss_pred CccchhcchhccccC-----------C--CCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427 314 DNLEIQRVIYGIFPT-----------Y--RDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 379 (535)
Q Consensus 314 ~~~~~~r~~~g~~P~-----------~--~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~ 379 (535)
..-.+.+.+...++. + .......+ .+||+|+|||||.++|+.|||+|++++||..|+++|+..++.
T Consensus 260 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g 339 (547)
T PRK08132 260 KPENVIPRVRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG 339 (547)
T ss_pred CHHHHHHHHHHHcCCCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC
Confidence 000000000011110 0 00111222 599999999999999999999999999999999999987753
Q ss_pred CCCChhchhh
Q 009427 380 DFVDSYSLSL 389 (535)
Q Consensus 380 ~~~~~~~l~~ 389 (535)
......|..
T Consensus 340 -~~~~~lL~~ 348 (547)
T PRK08132 340 -RAPDSLLDS 348 (547)
T ss_pred -CCcHHHHHH
Confidence 333444433
No 47
>PRK06126 hypothetical protein; Provisional
Probab=99.89 E-value=2.4e-21 Score=213.16 Aligned_cols=267 Identities=16% Similarity=0.187 Sum_probs=154.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHh-hhcC------
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA-TKFN------ 180 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-~~~~------ 180 (535)
++||+||| ||+|+++|+.|+++|++|+|+||.+... ..+...++.+.++.|.++|+. +++.+.-. ..+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~--~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIA--DEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChH--HHHHhhcCCccccCCceEE
Confidence 68999999 9999999999999999999999985322 223344677888888888973 22222110 0000
Q ss_pred ---CCc-c-ccccc--Ccc----------eeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEE
Q 009427 181 ---PNR-C-GFEGK--GEI----------WVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLL 242 (535)
Q Consensus 181 ---~~~-~-~~~~~--~~~----------~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~ 242 (535)
.+. + .+... ... +........+++..+.+.|.+.+.+. +++++++++|++++.+++++++.+
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~ 164 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATV 164 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEE
Confidence 010 0 00000 000 00011123467778889999998765 789999999999988888877765
Q ss_pred c---CC--eEEEcCeEEEccCCChHHHHHhCCCCCCCC-CceeEEEEEecC-----CCCCCChHHH-H------------
Q 009427 243 A---EG--KILSSHLIIDAMGNFSPVVKQAFPAGSGPL-DRTTYMFTYIDP-----QAGSPKLEEL-L------------ 298 (535)
Q Consensus 243 ~---~G--~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~-~~~~~~~~y~~~-----~~~~~~l~~~-~------------ 298 (535)
. +| .+++||+||+|||++|.+|+++-....+.. ......+.+... ....+....+ +
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 244 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAID 244 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEEC
Confidence 3 35 368999999999999999887422111111 011111111110 0000000000 0
Q ss_pred -HHHhhhc--cCcc-CCCCCccchh---cchhcc-ccC-------CC--CCCCCcc-CCCeeEeecCCCcccccccccch
Q 009427 299 -ERYWDLM--PEYQ-GVTLDNLEIQ---RVIYGI-FPT-------YR--DSPLPAA-FNRILQFGDASGIQSPVSFGGFG 360 (535)
Q Consensus 299 -~~~~~~~--P~~~-~~~~~~~~~~---r~~~g~-~P~-------~~--~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~ 360 (535)
...|.+. +... ........+. +..++. ++. +. ....+.+ .+||+|+|||||.++|+.|||+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N 324 (545)
T PRK06126 245 GRDEWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMN 324 (545)
T ss_pred CCCeEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEEEeecccchhheehhhhccCCEEEechhhccCCCCcCcccc
Confidence 0011111 1000 0000000011 111110 000 00 0011222 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 009427 361 SLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 361 ~al~da~~La~~l~~al~ 378 (535)
++++||..|+++|+..++
T Consensus 325 ~gieDa~~La~~La~~~~ 342 (545)
T PRK06126 325 TGIGDAVNLAWKLAAVLN 342 (545)
T ss_pred hhHHHHHHHHHHHHHHHc
Confidence 999999999999988764
No 48
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.88 E-value=2.2e-21 Score=204.95 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=109.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
..||+||| ||+|+++|+.|++.|++|+|+||.+.... .+...+++..++.|.++|+.+ .+... .+....+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~--~~~~~---~~~~~~~~~~ 78 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGE--AARQR---AVFTDHLTMM 78 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChH--HHHhh---ccCCcceEEE
Confidence 47999999 99999999999999999999999864321 112235667777888889743 22211 1111111110
Q ss_pred c--cCcc---------ee--eeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427 188 G--KGEI---------WV--EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (535)
Q Consensus 188 ~--~~~~---------~~--~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lV 253 (535)
. .+.. +. .......+++..+.+.|.+++.+.+ ++++.+++|++++.+++++.+.+.+|+++.||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 158 (396)
T PRK08163 79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL 158 (396)
T ss_pred eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEE
Confidence 0 0000 00 0001124788899999999988775 8999999999998877888888888888999999
Q ss_pred EEccCCChHHHHHhCC
Q 009427 254 IDAMGNFSPVVKQAFP 269 (535)
Q Consensus 254 V~AdG~~S~v~~~~~p 269 (535)
|+|||.+|.++++.++
T Consensus 159 V~AdG~~S~~r~~~~g 174 (396)
T PRK08163 159 IGCDGVKSVVRQSLVG 174 (396)
T ss_pred EECCCcChHHHhhccC
Confidence 9999999999988654
No 49
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.88 E-value=7.6e-21 Score=211.46 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=106.3
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh-----hhc
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-----TKF 179 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~ 179 (535)
++++||+||| ||+|+++|+.|++. |++|.||||.+-... .+.-.++.+.++.|..+|+.+ .+...-. ..|
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d--~l~~~g~~~~~~~~~ 107 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAE--RILKEAYWINETAFW 107 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchH--HHHhhcccccceEEE
Confidence 4479999999 99999999999995 999999999853211 222346788888888889843 2221100 112
Q ss_pred CCC-----ccc----ccccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC---eEEEEEc--
Q 009427 180 NPN-----RCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA-- 243 (535)
Q Consensus 180 ~~~-----~~~----~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~~---gv~v~~~-- 243 (535)
.+. .+. +........ ......+++..+.+.|.+.+.+.|+ ++..+++|++++.+++ .++++++
T Consensus 108 ~~~~~~~~~i~r~~~~~~~~~~~~-~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~ 186 (634)
T PRK08294 108 KPDPADPSTIVRTGRVQDTEDGLS-EFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRT 186 (634)
T ss_pred cCCCccccceeccccccccCCCCC-CCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEEC
Confidence 211 000 000000000 0112346788899999999988764 6788999999987643 3777664
Q ss_pred ----CC--eEEEcCeEEEccCCChHHHHHh
Q 009427 244 ----EG--KILSSHLIIDAMGNFSPVVKQA 267 (535)
Q Consensus 244 ----~G--~~i~a~lVV~AdG~~S~v~~~~ 267 (535)
+| ++++||+||+|||++|.+|+++
T Consensus 187 ~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 187 DGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred CCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 35 5799999999999999999985
No 50
>PRK06753 hypothetical protein; Provisional
Probab=99.88 E-value=1.1e-21 Score=205.52 Aligned_cols=254 Identities=21% Similarity=0.255 Sum_probs=152.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc-
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~- 188 (535)
||+||| ||+|+++|+.|+++|++|+|+||++.... .....++...++.|..+|+++ .+... . .......+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~--~~~~~-~--~~~~~~~~~~~ 76 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAK--GIKNA-G--QILSTMNLLDD 76 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHH--HHHhc-C--CcccceeEEcC
Confidence 799999 99999999999999999999999864322 122346677778887778632 22111 0 0001111110
Q ss_pred cCcc-----eeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427 189 KGEI-----WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 189 ~~~~-----~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v 263 (535)
.+.. +......+.+++..|.+.|.+.+. +.+++++++|++++.+++++.+++++|+++++|+||+|||.+|.+
T Consensus 77 ~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 77 KGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred CCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 1110 001122356888999999988764 358999999999988888888988888889999999999999999
Q ss_pred HHHhCCCCCCCCCceeE-EEEEecCCCC--C-CChHHHH--HHHhhhccCccCC-------C-------CCccc---hh-
Q 009427 264 VKQAFPAGSGPLDRTTY-MFTYIDPQAG--S-PKLEELL--ERYWDLMPEYQGV-------T-------LDNLE---IQ- 319 (535)
Q Consensus 264 ~~~~~p~~~~~~~~~~~-~~~y~~~~~~--~-~~l~~~~--~~~~~~~P~~~~~-------~-------~~~~~---~~- 319 (535)
|++..+... + ....+ .+.+...... . .....++ +++++++|...+. . ..... ..
T Consensus 155 R~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (373)
T PRK06753 155 RQSVNADSK-V-RYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQA 232 (373)
T ss_pred HHHhCCCCC-c-eEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHH
Confidence 998765421 1 11111 1111100000 0 0110111 1223333332110 0 00000 00
Q ss_pred ---------cchhccc--------cCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427 320 ---------RVIYGIF--------PTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY 374 (535)
Q Consensus 320 ---------r~~~g~~--------P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~ 374 (535)
+.+.... +.+...+.+.+ .+|+++||||||.++|+.|||+|.+++||..|++.|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~ 305 (373)
T PRK06753 233 YFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN 305 (373)
T ss_pred HHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence 0000000 01111122333 5899999999999999999999999999999998874
No 51
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.88 E-value=1.9e-21 Score=205.94 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=105.8
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
-+|+||| ||+|+++|+.|+++|++|+|+||.+... ..+...++...++.|.++|+++ ++... .+.+..+.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~--~l~~~---~~~~~~~~~~~ 77 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVAD--RLSGT---GVTPKALYLMD 77 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChH--HHhhc---ccCcceEEEec
Confidence 4799999 9999999999999999999999985321 2233446777888888889742 22211 11111111100
Q ss_pred cCc-----------cee--eeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcC
Q 009427 189 KGE-----------IWV--EDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EGKILSSH 251 (535)
Q Consensus 189 ~~~-----------~~~--~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~ 251 (535)
... ... .......+++..|.+.|.+++.+. +++++.+++|++++.+++++.+++. ++++++||
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~ad 157 (400)
T PRK06475 78 GRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAA 157 (400)
T ss_pred CCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecC
Confidence 000 000 011123478899999999998764 7899999999999887788877763 33579999
Q ss_pred eEEEccCCChHHHHHh
Q 009427 252 LIIDAMGNFSPVVKQA 267 (535)
Q Consensus 252 lVV~AdG~~S~v~~~~ 267 (535)
+||+|||.+|.+|++.
T Consensus 158 lvIgADG~~S~vR~~~ 173 (400)
T PRK06475 158 YLIACDGVWSMLRAKA 173 (400)
T ss_pred EEEECCCccHhHHhhc
Confidence 9999999999999985
No 52
>PRK11445 putative oxidoreductase; Provisional
Probab=99.88 E-value=2.1e-21 Score=201.98 Aligned_cols=259 Identities=15% Similarity=0.170 Sum_probs=156.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC---C--cccccccHHHHHHHHHcCCCChH-hHHHHHhhhcCCCc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG---R--EQEWNISRKELLELVESGILVED-DIDEATATKFNPNR 183 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~---~--~~~~~is~~~l~~L~~lGl~~~~-~~~~~~~~~~~~~~ 183 (535)
|||+||| ||+|+++|+.|++. ++|+|+||.+... . .....++...++.|.++|+.... .+... ..+.-..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~--~~~~~~~ 78 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP--QIFAVKT 78 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc--ccceeeE
Confidence 8999999 99999999999999 9999999986321 1 12233677777777777874211 11100 0010001
Q ss_pred ccccccC-cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCe--EEEcCeEEEccCC
Q 009427 184 CGFEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGN 259 (535)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~--~i~a~lVV~AdG~ 259 (535)
+.+.... ..+ ....+.+++..|.+.|.+. .+.|++++.++.|++++.+++++.+.+ ++|+ +++|++||+|||.
T Consensus 79 ~~~~~~~~~~~--~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 79 IDLANSLTRNY--QRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred ecccccchhhc--CCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCC
Confidence 1111000 001 1122458899999988875 467899999999999988888888775 4563 6999999999999
Q ss_pred ChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCC--h---HHHHHHHhhhccCccCC-----C-CCcc----ch-hcch-
Q 009427 260 FSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPK--L---EELLERYWDLMPEYQGV-----T-LDNL----EI-QRVI- 322 (535)
Q Consensus 260 ~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~--l---~~~~~~~~~~~P~~~~~-----~-~~~~----~~-~r~~- 322 (535)
+|.++++..+.... .....+...+....+ .+. + .+....|.|.+|..... . ..+. .. .+.+
T Consensus 156 ~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~W~~p~~~~~~~g~~~~~~~~~~~~~~l~~~l~ 233 (351)
T PRK11445 156 NSMVRRHLYPDHQI-RKYVAIQQWFAEKHP-VPFYSCIFDNEITDCYSWSISKDGYFIFGGAYPMKDGRERFETLKEKLS 233 (351)
T ss_pred CcHHhHHhcCCCch-hhEEEEEEEecCCCC-CCCcceEEeccCCCceEEEeCCCCcEEecccccccchHHHHHHHHHHHH
Confidence 99999987654111 111111111111111 110 0 11224566777764321 0 1110 00 0000
Q ss_pred -hc------------cccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427 323 -YG------------IFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 377 (535)
Q Consensus 323 -~g------------~~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al 377 (535)
++ .++.....+... ..+|+++||||||+++|++|+|++.+++++..|++.|.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~ 302 (351)
T PRK11445 234 AFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP 302 (351)
T ss_pred hcccccccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc
Confidence 01 111000000111 14889999999999999999999999999999999987543
No 53
>PRK07538 hypothetical protein; Provisional
Probab=99.88 E-value=4.9e-21 Score=203.63 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=106.0
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC-c
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN-R 183 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~-~ 183 (535)
||+||| ||+|+++|+.|+++|++|+|+||.+.... ....++++..++.|.++|+.+ .+...-. ..+++. .
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~--~l~~~~~~~~~~~~~~~~g~ 79 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLD--ALDAIGIRTRELAYFNRHGQ 79 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHH--HHHhhCCCCcceEEEcCCCC
Confidence 899999 99999999999999999999999853221 122235566777777778732 2222110 011111 1
Q ss_pred ccccccCcc-eeeeccccccCHHHHHHHHHHHHHh-CCC-EEEeCceEEEEEEeCCeEEEEEcCC-----eEEEcCeEEE
Q 009427 184 CGFEGKGEI-WVEDILNLGVSPAKLIEIVKKRFIS-LGG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIID 255 (535)
Q Consensus 184 ~~~~~~~~~-~~~~~~~~~v~~~~l~~~L~~~a~~-~G~-~i~~~~~V~~i~~~~~gv~v~~~~G-----~~i~a~lVV~ 255 (535)
..+...... .......+.+++..|.+.|.+++.+ .|. .++.+++|++++.+++++++.+.++ ++++||+||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence 101000000 0001112357899999999999876 464 6999999999988777776666442 4799999999
Q ss_pred ccCCChHHHHHhCCC
Q 009427 256 AMGNFSPVVKQAFPA 270 (535)
Q Consensus 256 AdG~~S~v~~~~~p~ 270 (535)
|||.+|.++++.+|.
T Consensus 160 ADG~~S~vR~~l~~~ 174 (413)
T PRK07538 160 ADGIHSAVRAQLYPD 174 (413)
T ss_pred CCCCCHHHhhhhcCC
Confidence 999999999998765
No 54
>PRK07236 hypothetical protein; Provisional
Probab=99.86 E-value=3.9e-20 Score=194.96 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=104.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccc--ccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~--~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~ 186 (535)
..||+||| |++|+++|+.|++.|++|+|+||.+....... ..++...++.|.++|+.+.. + .. +......+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~--~--~~--~~~~~~~~ 79 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA--D--IG--VPSRERIY 79 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc--c--cc--cCccceEE
Confidence 58999999 99999999999999999999999853221111 22466677778777874321 1 00 11001111
Q ss_pred -cccCccee-eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427 187 -EGKGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 187 -~~~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~ 264 (535)
...+.... .......++...+.+.|.+.+ .+..++.+++|++++.+++++++++++|++++||+||+|||.+|.+|
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 11111110 011111234566777776543 24679999999999988888999998898999999999999999999
Q ss_pred HHhCCC
Q 009427 265 KQAFPA 270 (535)
Q Consensus 265 ~~~~p~ 270 (535)
++.++.
T Consensus 158 ~~l~~~ 163 (386)
T PRK07236 158 AQLLPD 163 (386)
T ss_pred HHhCCC
Confidence 998764
No 55
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.86 E-value=6.2e-20 Score=201.93 Aligned_cols=266 Identities=20% Similarity=0.206 Sum_probs=154.9
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC--CCCc---ccccccHHHHHHHHHcCCCChHhHHHHHh----h
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL--KGRE---QEWNISRKELLELVESGILVEDDIDEATA----T 177 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~--~~~~---~~~~is~~~l~~L~~lGl~~~~~~~~~~~----~ 177 (535)
.+.++|+||| |++|+++|+.|+++|++|+|+||++. .+.. +...++...++.|..+|+...+++...-. .
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 3468999999 99999999999999999999999752 1111 12346777888888888633333222110 0
Q ss_pred --hc-C--CCc--ccccccCcce-eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEE
Q 009427 178 --KF-N--PNR--CGFEGKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILS 249 (535)
Q Consensus 178 --~~-~--~~~--~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~ 249 (535)
.+ . .+. ..+....... ......+.+++..|.+.|.+.+.. ..++.+++|++++.+++++++.+.+|+++.
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~ 236 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYE 236 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence 01 0 000 1110000000 000112457888999988665321 246788999999988889999998888899
Q ss_pred cCeEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCC-ChH---H-HH-------------H-HH-hhhc-cCc
Q 009427 250 SHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSP-KLE---E-LL-------------E-RY-WDLM-PEY 308 (535)
Q Consensus 250 a~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~-~l~---~-~~-------------~-~~-~~~~-P~~ 308 (535)
||+||+|||++|.+|++.++... + ....+.. |+...+..+ ... . .+ . .+ |+.+ +..
T Consensus 237 aDlVVGADG~~S~vR~~l~g~~~-~-~~sG~~~-~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p 313 (668)
T PLN02927 237 GDLLVGADGIWSKVRNNLFGRSE-A-TYSGYTC-YTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP 313 (668)
T ss_pred cCEEEECCCCCcHHHHHhcCCCC-C-cccceEE-EEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECC
Confidence 99999999999999999877532 1 1222221 211111000 000 0 00 0 01 1111 110
Q ss_pred cC-CCCCccc----------hhcchhccc-----------cCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHH
Q 009427 309 QG-VTLDNLE----------IQRVIYGIF-----------PTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRH 365 (535)
Q Consensus 309 ~~-~~~~~~~----------~~r~~~g~~-----------P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~d 365 (535)
.. ....+.. |...+..++ +.+...+.+.+ .+|++|+|||||.++|+.|||.|.+++|
T Consensus 314 ~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieD 393 (668)
T PLN02927 314 AGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIED 393 (668)
T ss_pred ccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHH
Confidence 00 0000000 000000000 11111122233 4899999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 009427 366 LGRLSTGVYEAVR 378 (535)
Q Consensus 366 a~~La~~l~~al~ 378 (535)
|..|+..|.++++
T Consensus 394 a~~La~~L~~~~~ 406 (668)
T PLN02927 394 SFQLALELDEAWK 406 (668)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987754
No 56
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.84 E-value=6.1e-20 Score=195.26 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=104.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh---hhcCCCccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNPNRCG 185 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~---~~~~~~~~~ 185 (535)
+|+||| |++|+++|+.|+++| ++|+|+||.+.... .....+++..++.|..+|+.+ .++.... ..+......
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~--~~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGE--AYTQVADSTPAPWQDIWFE 79 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChh--HHHHHhcCCCccCcceeEE
Confidence 699999 999999999999998 59999999853221 111235666777777778732 2222111 000000011
Q ss_pred ccc--cCcc----eeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 186 FEG--KGEI----WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 186 ~~~--~~~~----~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
+.. .... +........+++..|.+.|.+.+. ...++.+++|++++.+++++++.+++|.+++||+||+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence 100 0000 000111124788889998887763 35678899999998888889998888888999999999999
Q ss_pred ChHHHHHhCC
Q 009427 260 FSPVVKQAFP 269 (535)
Q Consensus 260 ~S~v~~~~~p 269 (535)
+|.+|++.++
T Consensus 158 ~S~vR~~l~~ 167 (414)
T TIGR03219 158 KSALRDYVLQ 167 (414)
T ss_pred cHHHHHHhcC
Confidence 9999998875
No 57
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.84 E-value=9.3e-20 Score=184.94 Aligned_cols=257 Identities=21% Similarity=0.214 Sum_probs=142.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC--ccc-
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPN--RCG- 185 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~--~~~- 185 (535)
-+||||| |++|+++|..|+|+|++|+|+|+....+. ....++.....+.|...|+ .+.+.. ..-|. ++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~--~e~i~~----~gip~~~~v~~ 76 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGL--KEQIRE----QGIPLGGRVLI 76 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHccc--HHHHHH----hcCcccceeee
Confidence 5899999 99999999999999999999999743322 2333444445566655564 222221 11111 111
Q ss_pred ccccCccee----eec--cccccCHHHHHHHHHHHHHhCCCEEEeCc------eEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427 186 FEGKGEIWV----EDI--LNLGVSPAKLIEIVKKRFISLGGVIFEGY------SVSSICTYENAAVLLLAEGKILSSHLI 253 (535)
Q Consensus 186 ~~~~~~~~~----~~~--~~~~v~~~~l~~~L~~~a~~~G~~i~~~~------~V~~i~~~~~gv~v~~~~G~~i~a~lV 253 (535)
....+..+. .+. .-..+.++.+++.++..+... ..++.+. ....++......++++.+|.++++|++
T Consensus 77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dll 155 (420)
T KOG2614|consen 77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLL 155 (420)
T ss_pred ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEE
Confidence 111111111 000 012245666777777776664 3444443 444454444556678888999999999
Q ss_pred EEccCCChHHHHHhCCCCCCCCCceeEEEEEecCC--CC-CCC---hHHHHHHH--hhhccCcc-----------CC---
Q 009427 254 IDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQ--AG-SPK---LEELLERY--WDLMPEYQ-----------GV--- 311 (535)
Q Consensus 254 V~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~--~~-~~~---l~~~~~~~--~~~~P~~~-----------~~--- 311 (535)
|+|||++|.+++++.... | ...+...|+... +. .+. .-.+.+.+ .|..|... .+
T Consensus 156 igCDGa~S~Vr~~l~~~~--p--~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~ 231 (420)
T KOG2614|consen 156 IGCDGAYSKVRKWLGFKE--P--RYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDF 231 (420)
T ss_pred EEcCchHHHHHHHhcccC--C--cceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccc
Confidence 999999999999976541 1 222222333210 00 000 00011111 11111110 00
Q ss_pred -CCCccchhc----chh--------ccc-----------cCCCCCCCC-----ccCCCeeEeecCCCcccccccccchHH
Q 009427 312 -TLDNLEIQR----VIY--------GIF-----------PTYRDSPLP-----AAFNRILQFGDASGIQSPVSFGGFGSL 362 (535)
Q Consensus 312 -~~~~~~~~r----~~~--------g~~-----------P~~~~~pl~-----~~~~rvlliGDAA~~~~P~~G~Gi~~a 362 (535)
..+++...+ .+. ..+ |-....|.+ +..++++|+|||||.|.|+.|||+|+|
T Consensus 232 ~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a 311 (420)
T KOG2614|consen 232 APFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCA 311 (420)
T ss_pred cCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccch
Confidence 011111100 000 000 111112221 224789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 009427 363 TRHLGRLSTGVYEAVR 378 (535)
Q Consensus 363 l~da~~La~~l~~al~ 378 (535)
++|+..|+++|+++..
T Consensus 312 ~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 312 FEDCVVLAECLDEAIN 327 (420)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999875
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.84 E-value=2.6e-19 Score=187.25 Aligned_cols=310 Identities=15% Similarity=0.166 Sum_probs=168.9
Q ss_pred cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
||+||| |++|+++|+.|++. |++|+|+|+.+..++++.|......+... + ...++..+.+.|....+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~---~---~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDA---Q---HAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchh---h---hhhhhhhheEeCCCCEEECcc
Confidence 899999 99999999999997 99999999987555566665332222211 0 112344455555433232211
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHH---
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK--- 265 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~--- 265 (535)
....+ +.....+++..|.+.+.+++.. + ++.+++|+++ +++++++ ++|++++|++||+|+|..|+...
T Consensus 75 ~~~~l--~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~~ 145 (370)
T TIGR01789 75 YRRKL--KTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLKGG 145 (370)
T ss_pred hhhhc--CCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCccccce
Confidence 11111 1234568889999999876643 3 6778899988 4566555 57889999999999998874221
Q ss_pred -HhCCC----CCCCCCce-eEEEEEecCCCCCCChHHHHHHHhhhccCccCC----------------------------
Q 009427 266 -QAFPA----GSGPLDRT-TYMFTYIDPQAGSPKLEELLERYWDLMPEYQGV---------------------------- 311 (535)
Q Consensus 266 -~~~p~----~~~~~~~~-~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~---------------------------- 311 (535)
|.|-+ ...|.+.. ..++.|+...... ..|...+|...+.
T Consensus 146 ~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g-------~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~~~~ 218 (370)
T TIGR01789 146 FQVFLGREMRLQEPHGLENPIIMDATVDQLAG-------YRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQYAR 218 (370)
T ss_pred eeEEEEEEEEEcCCCCCCccEEEeeeccCCCC-------ceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 11000 00000000 0111111000000 0112222222110
Q ss_pred --CCCccchhcchhccccCCCCCCCC---ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChhc
Q 009427 312 --TLDNLEIQRVIYGIFPTYRDSPLP---AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS 386 (535)
Q Consensus 312 --~~~~~~~~r~~~g~~P~~~~~pl~---~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~ 386 (535)
......+.+...|.+|.....++. ...+++++||||||++||.+|||++.+++++..|++.+. ++...+. ..
T Consensus 219 ~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~-~~ 295 (370)
T TIGR01789 219 ANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLA-AF 295 (370)
T ss_pred HhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchh-hh
Confidence 000011112233667764321222 124669999999999999999999999999988887653 0110111 11
Q ss_pred hhhhCCCCch-hhh--hHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhhcCcchHHHHH
Q 009427 387 LSLLNPYMPN-LSA--SWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTL 456 (535)
Q Consensus 387 l~~l~~y~~~-~~~--~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~~~~~~l~~~~ 456 (535)
+ ..|... ... ...|-..|-+... .|. ....+|..|.++|++....|+....++.+..+++
T Consensus 296 ~---~~~~~~~~~~~~~~~~~~~~ll~~~---~~~----~~~~~f~~~f~l~~~~~~rFl~~~~~~~~~~~i~ 358 (370)
T TIGR01789 296 I---DSRARRHWSKTGYYRLLNRMLFFAA---KPE----KRVRVFQRFYGLREGLIERFYAARSNTFDKLRVL 358 (370)
T ss_pred h---hHHHHHHHHHhHHHHHHHHHHhccC---Cch----hHHHHHHHHhCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 1 122211 111 1111111212111 122 2356677777789999999999988887776654
No 59
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.73 E-value=1.7e-17 Score=162.66 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=109.4
Q ss_pred cccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhhHHHH
Q 009427 325 IFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 404 (535)
Q Consensus 325 ~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~~~~~ 404 (535)
.+|.....+.+...++++++|||+++.||+||+||++|+.|+..|++.|... .+..+.+++.. .++
T Consensus 116 sMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~--~dl~d~~~v~~------------~l~ 181 (276)
T PF08491_consen 116 SMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPI--PDLSDTKAVLE------------ALK 181 (276)
T ss_pred eecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhh--cCcccHHHHHH------------HHH
Confidence 3565554444445699999999999999999999999999999999988765 12211211110 111
Q ss_pred HhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhhcCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHH
Q 009427 405 RAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSG 484 (535)
Q Consensus 405 ~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~ 484 (535)
++. ..++.....||.+..++|..|.+-++ ..+.+.+.|+.+..+++. +...| ..+|+++.++| +.++.
T Consensus 182 ~f~---~~Rk~~~s~iNiLA~aLY~lF~a~~~-~l~~Lr~gcf~Yf~~GG~----~~~gp---v~LLsgl~p~P-~~L~~ 249 (276)
T PF08491_consen 182 KFH---WKRKPLSSVINILAQALYSLFAADDD-YLKALRQGCFKYFQLGGE----CVSGP---VALLSGLNPRP-LVLFY 249 (276)
T ss_pred HHH---HHHccchHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCCC----CCcch---HHHhccCCCCc-HHHHH
Confidence 111 12233456899999999999887544 444666777777554322 34566 68889999998 59999
Q ss_pred HHHHHHHHHHHHhhhhhhHHhhhh
Q 009427 485 HFFMLGYYTLLSTFADPVIRSLLN 508 (535)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~ 508 (535)
|||++++|++...+.. +||+.
T Consensus 250 Hff~Va~~~i~~~~~~---~p~~~ 270 (276)
T PF08491_consen 250 HFFAVAFYAIYLNLKP---RPWYG 270 (276)
T ss_pred HHHHHHHHHHHHHccc---CCccc
Confidence 9999999999999985 67665
No 60
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.68 E-value=1.1e-15 Score=174.11 Aligned_cols=140 Identities=20% Similarity=0.190 Sum_probs=90.1
Q ss_pred cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCC-Ccccc
Q 009427 112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF 186 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~-~~~~~ 186 (535)
+|+||| ||+|+++|+.|+++ |++|+|+||++..... ....++...++.|...+ .. +...+...+.. ....+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~---~~-~~~~~~~~~~~~~~~~~ 77 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAAD---PV-SAAAIGDAFNHWDDIDV 77 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcC---HH-HHHHHHHhcccCCceEE
Confidence 699999 99999999999998 8999999998642211 11125556666663322 11 11112111111 11111
Q ss_pred cccCcceee-eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHH
Q 009427 187 EGKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK 265 (535)
Q Consensus 187 ~~~~~~~~~-~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~ 265 (535)
...+..... ......+++..|.+.|.+++.+.|++++++++|+++.. ...++|+||+|||.+|.+|+
T Consensus 78 ~~~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~vR~ 145 (765)
T PRK08255 78 HFKGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRIRT 145 (765)
T ss_pred EECCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHHHH
Confidence 111111111 11123578999999999999999999999998877521 12579999999999999988
Q ss_pred Hh
Q 009427 266 QA 267 (535)
Q Consensus 266 ~~ 267 (535)
+.
T Consensus 146 ~~ 147 (765)
T PRK08255 146 RY 147 (765)
T ss_pred HH
Confidence 63
No 61
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.64 E-value=3e-16 Score=168.21 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=95.1
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCCeEEEcCeEEEccCCChHHHHHhCCCC--CCC
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAG--SGP 274 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv--~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~~--~~~ 274 (535)
.+.+|+..|.+.|++.|.+.|++++++ +|+++..++++. .|++++|++++||+||||+|..|.+.++.+... +..
T Consensus 148 ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~ 226 (454)
T PF04820_consen 148 AYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWS 226 (454)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEET
T ss_pred eEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCcccc
Confidence 356899999999999999999999987 488887777764 366778999999999999998887766532210 000
Q ss_pred CCc---eeEEEEEecCCCCCC-ChHH-HHHHHhhhccCccCCC---------CCccchhcchh---c----ccc----CC
Q 009427 275 LDR---TTYMFTYIDPQAGSP-KLEE-LLERYWDLMPEYQGVT---------LDNLEIQRVIY---G----IFP----TY 329 (535)
Q Consensus 275 ~~~---~~~~~~y~~~~~~~~-~l~~-~~~~~~~~~P~~~~~~---------~~~~~~~r~~~---g----~~P----~~ 329 (535)
... ..+...........+ .... .-.+++|.+|...+.. .++....+.+. + ..| ..
T Consensus 227 ~~L~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~G~V~s~~~~s~~~A~~~l~~~l~~~~~~~~~~i~~~ 306 (454)
T PF04820_consen 227 DWLPNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGSGYVYSSDFISDDEAEAELLAYLGGSPEAEPRHIRFR 306 (454)
T ss_dssp TTCEEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEEEEEEETTTSHHHHHHHHHHHHHTCHCTTSCEEEE-S
T ss_pred ccccccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceEEEEeccccCCHHHHHHHHHHhcchhhhcchhhhccc
Confidence 000 011111111111111 1111 1246678877654210 00000000000 0 011 00
Q ss_pred CCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHH
Q 009427 330 RDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 373 (535)
Q Consensus 330 ~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l 373 (535)
.....+.+.+|+++|||||++++|+.+.|+..++..+..+++.+
T Consensus 307 ~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l 350 (454)
T PF04820_consen 307 SGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEAL 350 (454)
T ss_dssp -EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTH
T ss_pred ccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhc
Confidence 00011233599999999999999999999999988555554443
No 62
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.58 E-value=4.9e-14 Score=142.56 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=92.0
Q ss_pred CcccEEEEc-chHHHHHHHHHHHC----CCcEEEEcccCC---CCC-------cccccccHHHHHHHHHcCCCChHhHHH
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFK----GLRVAIVERNTL---KGR-------EQEWNISRKELLELVESGILVEDDIDE 173 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~----G~~V~liEr~~~---~~~-------~~~~~is~~~l~~L~~lGl~~~~~~~~ 173 (535)
..||||||| ||+|+++|..|... -+||+|+|-... ... ++...++...+..+...|.++ .+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd--~i~~ 112 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWD--HIFH 112 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHH--Hhhh
Confidence 379999999 99999999999865 579999998722 111 122225666666665557643 1111
Q ss_pred HHhhhcCCC---------cccccccCcceeeeccccccCHHHHHHHHHH-HH--HhCCCEEEeCceEEEEEEe------C
Q 009427 174 ATATKFNPN---------RCGFEGKGEIWVEDILNLGVSPAKLIEIVKK-RF--ISLGGVIFEGYSVSSICTY------E 235 (535)
Q Consensus 174 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~-~a--~~~G~~i~~~~~V~~i~~~------~ 235 (535)
.....|+.. .+.|.. +-...+ ..+.+....+.-.|.. .+ +...+++.+.+++..+..- +
T Consensus 113 ~R~~~~~~~~v~Ds~s~a~I~~~~--d~~~~d-~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~ 189 (481)
T KOG3855|consen 113 DRYQKFSRMLVWDSCSAALILFDH--DNVGID-MAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKND 189 (481)
T ss_pred hccccccceeeecccchhhhhhcc--cccccc-ceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCC
Confidence 111111110 111111 101111 1234445555555553 22 2346889999888887652 1
Q ss_pred C--eEEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427 236 N--AAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 236 ~--gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~ 266 (535)
+ ...+++.||..+.+|++|+|||.+|.+++.
T Consensus 190 n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~ 222 (481)
T KOG3855|consen 190 NGMWFHITLTDGINFATDLLIGADGFNSVVRKA 222 (481)
T ss_pred CcceEEEEeccCceeeeceeeccccccchhhhh
Confidence 2 245677789999999999999999999876
No 63
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.45 E-value=3.5e-12 Score=128.89 Aligned_cols=296 Identities=19% Similarity=0.211 Sum_probs=170.5
Q ss_pred CcccEEEEc-chHHHHHHHHHHHC------CCcEEEEcccCCCCCcccc-c-ccHHHHHHHHHcCCCChHhHHHHHhhhc
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFK------GLRVAIVERNTLKGREQEW-N-ISRKELLELVESGILVEDDIDEATATKF 179 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~------G~~V~liEr~~~~~~~~~~-~-is~~~l~~L~~lGl~~~~~~~~~~~~~~ 179 (535)
+++||+||| ||+|+++|+.|.+. -+||+|+||....+++... + +.+..+++|. .++.+--..+....
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~----P~wke~~apl~t~v 150 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELL----PDWKEDGAPLNTPV 150 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhC----cchhhcCCcccccc
Confidence 479999999 99999999988653 5799999998655543321 1 3334444441 11111000000000
Q ss_pred CCCccccccc-------CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEE--Ec------C
Q 009427 180 NPNRCGFEGK-------GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL--LA------E 244 (535)
Q Consensus 180 ~~~~~~~~~~-------~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~--~~------~ 244 (535)
..+.+.|... -..-..+-.+|.+.-..+.++|.++|++.|++|+-+..+.++..++|+.+.. ++ +
T Consensus 151 T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~ 230 (621)
T KOG2415|consen 151 TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKD 230 (621)
T ss_pred cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCC
Confidence 0011111110 0001122346778888999999999999999999998888887777764432 21 1
Q ss_pred ---------CeEEEcCeEEEccCCChHHHHHh---CCCCCCCCCceeEEEEEecCCCC-----CCC-hHH---------H
Q 009427 245 ---------GKILSSHLIIDAMGNFSPVVKQA---FPAGSGPLDRTTYMFTYIDPQAG-----SPK-LEE---------L 297 (535)
Q Consensus 245 ---------G~~i~a~lVV~AdG~~S~v~~~~---~p~~~~~~~~~~~~~~y~~~~~~-----~~~-l~~---------~ 297 (535)
|.++.|+..|.|.|++..+.+|+ |.-+.+ .+..+|-+...+++.- +|. ++. .
T Consensus 231 G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n-~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~~t 309 (621)
T KOG2415|consen 231 GAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLREN-CEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDNDT 309 (621)
T ss_pred CCccccccccceecceeEEEeccccchhHHHHHHHhCcccC-CCcceeccccceeEecChhhcCCcceeeeccCcccCCc
Confidence 34799999999999998888774 333222 2345555544332211 111 010 1
Q ss_pred H-HHHhhhccCc------------cCCCC---Cccchh-------cch-------hcc--c-cCCCCCCC-CccCCCeeE
Q 009427 298 L-ERYWDLMPEY------------QGVTL---DNLEIQ-------RVI-------YGI--F-PTYRDSPL-PAAFNRILQ 343 (535)
Q Consensus 298 ~-~~~~~~~P~~------------~~~~~---~~~~~~-------r~~-------~g~--~-P~~~~~pl-~~~~~rvll 343 (535)
| +.|+..+-+. .+..+ .+++.. ..+ +|. + ....+ .+ +..+++=++
T Consensus 310 YGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQ-siPkl~FPGG~l 388 (621)
T KOG2415|consen 310 YGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQ-SIPKLVFPGGAL 388 (621)
T ss_pred cCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcc-cCcccccCCceE
Confidence 1 1122222110 11000 001000 000 000 0 01111 12 234678889
Q ss_pred eecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhhHHHHHhhhhc
Q 009427 344 FGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 410 (535)
Q Consensus 344 iGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~~~~~~~m~~~ 410 (535)
||-+|++++-----|-.+||.+...+|+.|-+++.....+.-.......|+.|++.+|.+....+++
T Consensus 389 iGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvR 455 (621)
T KOG2415|consen 389 IGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVR 455 (621)
T ss_pred eecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhh
Confidence 9999999998888999999999999999999999654322211222457999999999987766654
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.41 E-value=5.2e-12 Score=125.54 Aligned_cols=215 Identities=19% Similarity=0.240 Sum_probs=123.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
++||+||| ||+|+++|+.|++.|++|+|+||....++. .|.-. ..+..+ .+ .++....+ ..+. +.+..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg-~~~gg-~~~~~~---~v--~~~~~~~l-~~~g---v~~~~ 93 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG-MWGGG-MLFNKI---VV--QEEADEIL-DEFG---IRYKE 93 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCc-cccccc---cc--hHHHHHHH-HHCC---CCcee
Confidence 58999999 999999999999999999999998643321 11100 000000 00 00000111 1111 11110
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EEEE----c-----CCeEEEcCeEEE
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLL----A-----EGKILSSHLIID 255 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv---~v~~----~-----~G~~i~a~lVV~ 255 (535)
... ..+.+|+..+...|.+++.+.|++++.+++|+++..+++ .+ ++.. . +..+++|+.||+
T Consensus 94 ~~~------g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 94 VED------GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred ecC------cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 000 123467889999999999999999999999999987665 22 2211 0 225799999999
Q ss_pred ccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCCC
Q 009427 256 AMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLP 335 (535)
Q Consensus 256 AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~ 335 (535)
|+|+++.+.+........ ... ......+ + |. . ..++..... ..
T Consensus 168 ATG~~a~v~~~l~~~~~~---~~~------~~~g~~~-~--------~~-----~-~~e~~v~~~-------------t~ 210 (257)
T PRK04176 168 ATGHDAEVVSVLARKGPE---LGI------EVPGEKS-M--------WA-----E-RGEKLVVEN-------------TG 210 (257)
T ss_pred EeCCCcHHHHHHHHHcCC---ccc------ccCCccc-c--------cc-----C-chHHHHHhc-------------CC
Confidence 999999988764211000 000 0000000 0 00 0 000000000 01
Q ss_pred ccCCCeeEeecCCCccc--ccccccchHHHHHHHHHHHHHHHHHh
Q 009427 336 AAFNRILQFGDASGIQS--PVSFGGFGSLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 336 ~~~~rvlliGDAA~~~~--P~~G~Gi~~al~da~~La~~l~~al~ 378 (535)
...+++++.|-|+..++ |=.|-=|+.++.+..+.|+.|.+.|+
T Consensus 211 ~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 211 EVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred eEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 11467888999887665 34555566678888889998887765
No 65
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.38 E-value=1.2e-11 Score=122.76 Aligned_cols=140 Identities=24% Similarity=0.413 Sum_probs=89.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
++||+||| ||+|+++|+.|+++|++|+||||+...+.. .|.-. ..+..+ .+ . ......+ ..+. +.+..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg-~~~~~~---~~-~-~~~~~~l-~~~g---i~~~~ 89 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGG-MLFSKI---VV-E-KPAHEIL-DEFG---IRYED 89 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCC-cceecc---cc-c-chHHHHH-HHCC---CCeee
Confidence 69999999 999999999999999999999998644322 22110 000000 00 0 0000111 1110 11111
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EE-EEEc-----------CCeEEEcCeEE
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EGKILSSHLII 254 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~-v~~~-----------~G~~i~a~lVV 254 (535)
.+..+ +..++..+.+.|.+++.+.|++++.+++|+++..++++ +. |.+. +..+++|++||
T Consensus 90 ~~~g~------~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VV 163 (254)
T TIGR00292 90 EGDGY------VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVV 163 (254)
T ss_pred ccCce------EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEE
Confidence 11111 22466788999999999999999999999999877662 22 2221 12479999999
Q ss_pred EccCCChHHHHH
Q 009427 255 DAMGNFSPVVKQ 266 (535)
Q Consensus 255 ~AdG~~S~v~~~ 266 (535)
+|||+.+.+.+.
T Consensus 164 dATG~~a~v~~~ 175 (254)
T TIGR00292 164 DATGHDAEIVAV 175 (254)
T ss_pred EeecCCchHHHH
Confidence 999999887665
No 66
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.37 E-value=7.3e-12 Score=127.64 Aligned_cols=145 Identities=22% Similarity=0.308 Sum_probs=96.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc------ccccccHH-HHHHHHHcCCCC-hHhHHHHHhhhcC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRK-ELLELVESGILV-EDDIDEATATKFN 180 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~------~~~~is~~-~l~~L~~lGl~~-~~~~~~~~~~~~~ 180 (535)
.+|||||| ||+|+++|..++++|.+|+|||+++-.++. ...|+... ..+.+... ... ...+...+ ..|.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~-~p~~~~fl~sal-~~ft 80 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSR-NPGNGHFLKSAL-ARFT 80 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHh-CCCcchHHHHHH-HhCC
Confidence 68999999 999999999999999999999998533321 11232211 12222110 000 01111111 2232
Q ss_pred CC-cccc--------cc--cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEE
Q 009427 181 PN-RCGF--------EG--KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILS 249 (535)
Q Consensus 181 ~~-~~~~--------~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~ 249 (535)
+. .+.| .. .+..+. -.-....+++.|+.++++.|++++.+++|.+++.++++..+.+++|.+++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp-----~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~ 155 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFP-----DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVK 155 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecC-----CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEE
Confidence 21 1111 11 111111 11346789999999999999999999999999988878899998888899
Q ss_pred cCeEEEccCCCh
Q 009427 250 SHLIIDAMGNFS 261 (535)
Q Consensus 250 a~lVV~AdG~~S 261 (535)
||.+|+|+|..|
T Consensus 156 ~d~lilAtGG~S 167 (408)
T COG2081 156 CDSLILATGGKS 167 (408)
T ss_pred ccEEEEecCCcC
Confidence 999999999776
No 67
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.35 E-value=7.2e-12 Score=118.18 Aligned_cols=129 Identities=26% Similarity=0.403 Sum_probs=81.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---------ccHHHHHHHHHcCCCChHhHHHHHhhhc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---------is~~~l~~L~~lGl~~~~~~~~~~~~~~ 179 (535)
++||+||| ||+|+++|+.||+.|+||+|+|++...++ ..|. +.......|.++|+ .|
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG-g~~~Gg~lf~~iVVq~~a~~iL~elgi------------~y 83 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG-GMWGGGMLFNKIVVQEEADEILDELGI------------PY 83 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT-TTTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc-cccccccccchhhhhhhHHHHHHhCCc------------ee
Confidence 69999999 99999999999999999999999864432 1221 11111111111121 11
Q ss_pred CCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeE---EEEEc---------CCe
Q 009427 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA---VLLLA---------EGK 246 (535)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv---~v~~~---------~G~ 246 (535)
. ..++. .+..|+..+...|..++.++|++++..+.|+++...+ +.+ ++... |--
T Consensus 84 ~-------~~~~g------~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl 150 (230)
T PF01946_consen 84 E-------EYGDG------YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL 150 (230)
T ss_dssp E-------E-SSE------EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred E-------EeCCe------EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence 1 01111 2346788888999999999999999999999998887 333 23221 224
Q ss_pred EEEcCeEEEccCCChHHH
Q 009427 247 ILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 247 ~i~a~lVV~AdG~~S~v~ 264 (535)
.++|++||+|||+-+.+.
T Consensus 151 ~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 151 TIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp EEEESEEEE---SSSSST
T ss_pred eEEEeEEEeCCCCchHHH
Confidence 799999999999877543
No 68
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.7e-11 Score=114.90 Aligned_cols=140 Identities=26% Similarity=0.383 Sum_probs=90.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
+.||+||| ||+||++|+.||++|+||+|+||+...++ ..|.-. ..+..+ . -.++.+. +..++. +.+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG-G~w~GG-mlf~~i----V-v~~~a~~-iL~e~g---I~ye~ 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG-GIWGGG-MLFNKI----V-VREEADE-ILDEFG---IRYEE 98 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC-cccccc-ccccee----e-ecchHHH-HHHHhC---Cccee
Confidence 47999999 99999999999999999999999864332 223200 000000 0 0111111 111111 11111
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EEEEc---------CCeEEEcCeEEE
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLLA---------EGKILSSHLIID 255 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv---~v~~~---------~G~~i~a~lVV~ 255 (535)
.++. .+..|+..+...|..++.++|++|+..+.|+++...++ ++ ++... |--.++|++||+
T Consensus 99 ~e~g------~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvD 172 (262)
T COG1635 99 EEDG------YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVD 172 (262)
T ss_pred cCCc------eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEe
Confidence 1111 23457788889999999999999999999999988777 33 22211 234699999999
Q ss_pred ccCCChHHHHH
Q 009427 256 AMGNFSPVVKQ 266 (535)
Q Consensus 256 AdG~~S~v~~~ 266 (535)
|||+-..+...
T Consensus 173 aTGHda~v~~~ 183 (262)
T COG1635 173 ATGHDAEVVSF 183 (262)
T ss_pred CCCCchHHHHH
Confidence 99988776654
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.34 E-value=2e-11 Score=126.01 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=57.8
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHHHHHh
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQA 267 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v~~~~ 267 (535)
...+|+..+.+.|.+.+++.|++++.+++|+++..++++++ |.+++|+ ++||.||+|+|.++......
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~ 209 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPL 209 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHT
T ss_pred cccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeec
Confidence 34489999999999999999999999999999999999988 8998886 99999999999998775543
No 70
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.27 E-value=6.2e-11 Score=125.14 Aligned_cols=139 Identities=24% Similarity=0.309 Sum_probs=76.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC------cccccccH-----HH-----------HH-HHHHcCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISR-----KE-----------LL-ELVESGIL 166 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~------~~~~~is~-----~~-----------l~-~L~~lGl~ 166 (535)
|||+||| |++|++||+.|++.|.+|+|+||+...+. +...|++. .+ +. .+.. +
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~---f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR---F 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH---S
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc---C
Confidence 7999999 99999999999999999999999943221 01111110 00 00 0000 0
Q ss_pred ChHhHHHHHhhhcCCCccccc--ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEc
Q 009427 167 VEDDIDEATATKFNPNRCGFE--GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLA 243 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~ 243 (535)
+.+++..... ...+.+. ..+..|. ..-....+++.|.+++.+.|++++.+++|++++.++++ +.|+++
T Consensus 78 ~~~d~~~ff~----~~Gv~~~~~~~gr~fP-----~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~ 148 (409)
T PF03486_consen 78 SPEDLIAFFE----ELGVPTKIEEDGRVFP-----KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK 148 (409)
T ss_dssp -HHHHHHHHH----HTT--EEE-STTEEEE-----TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET
T ss_pred CHHHHHHHHH----hcCCeEEEcCCCEECC-----CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc
Confidence 1111111111 0001110 1111221 11246788899999999999999999999999988887 778876
Q ss_pred CCeEEEcCeEEEccCCCh
Q 009427 244 EGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 244 ~G~~i~a~lVV~AdG~~S 261 (535)
++.++.||.||.|+|..|
T Consensus 149 ~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 149 NGGEYEADAVILATGGKS 166 (409)
T ss_dssp TTEEEEESEEEE----SS
T ss_pred CcccccCCEEEEecCCCC
Confidence 778999999999999766
No 71
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.23 E-value=1.5e-10 Score=121.38 Aligned_cols=157 Identities=22% Similarity=0.263 Sum_probs=101.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCccccc-------------------c---c-HHHHHHHHHc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWN-------------------I---S-RKELLELVES 163 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~-------------------i---s-~~~l~~L~~l 163 (535)
++||+||| |+.|+++|+.|++.+ ++|+||||....+..++.+ + . ....+...++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 69999999 999999999999998 9999999985433222111 0 0 0111111222
Q ss_pred CC-----------CChHhHHHHHhhhc---CCC--c-ccccc---------------cCcceeeeccccccCHHHHHHHH
Q 009427 164 GI-----------LVEDDIDEATATKF---NPN--R-CGFEG---------------KGEIWVEDILNLGVSPAKLIEIV 211 (535)
Q Consensus 164 Gl-----------~~~~~~~~~~~~~~---~~~--~-~~~~~---------------~~~~~~~~~~~~~v~~~~l~~~L 211 (535)
+. +++++++.. ...| ... . ..+.. .+..+.+ ....||+..+...|
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L-~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p--~~giV~~~~~t~~l 159 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERL-EKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVP--SGGIVDPGELTRAL 159 (429)
T ss_pred CCcccccCeEEEEEChHHHHHH-HHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcC--CCceEcHHHHHHHH
Confidence 21 112222211 1111 000 0 11100 0111221 23458999999999
Q ss_pred HHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeE-EEcCeEEEccCCChHHHHHhCC
Q 009427 212 KKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSPVVKQAFP 269 (535)
Q Consensus 212 ~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~-i~a~lVV~AdG~~S~v~~~~~p 269 (535)
.+.+.++|++++.+++|++|+.++|+ ..+.+.+|++ ++|+.||.|.|.+|.-..+...
T Consensus 160 ~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g 219 (429)
T COG0579 160 AEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG 219 (429)
T ss_pred HHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence 99999999999999999999998884 5566777765 9999999999999877666433
No 72
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.23 E-value=2.1e-10 Score=120.48 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=56.2
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~ 266 (535)
+..+++..+.+.|.+.+.+.|++++.+++|++++.+++++.|.++++ ++.|+.||+|+|.++....+
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~ 205 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLS 205 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhh
Confidence 45589999999999999999999999999999987777777777555 79999999999988654433
No 73
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.23 E-value=1.9e-10 Score=120.60 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=55.6
Q ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~ 264 (535)
..+++.++...+.+.+.+.|++++++++|++++.+++++.|.+++| ++.||.||.|+|.++...
T Consensus 144 g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l 207 (376)
T PRK11259 144 GFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDL 207 (376)
T ss_pred CEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhh
Confidence 3578999999999999999999999999999988777888887666 799999999999987543
No 74
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.22 E-value=2.2e-10 Score=123.66 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=53.0
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~ 262 (535)
...+|+.++.+.|.+.+.+.|++|+++++|++++. ++.+.|++.+| +++|+.||.|+|+++.
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 45689999999999999999999999999999964 45566777555 6999999999999875
No 75
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.19 E-value=3.6e-10 Score=119.48 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=58.6
Q ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFP 269 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p 269 (535)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+.+| ++.|+.||.|+|.+|....+.++
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g 212 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAG 212 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhC
Confidence 4578999999999999999999999999999987777777777655 79999999999999976555443
No 76
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.17 E-value=3.9e-10 Score=123.15 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=54.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--eEEEcCeEEEccCCChHHH
Q 009427 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~---G--~~i~a~lVV~AdG~~S~v~ 264 (535)
..+|+.++...+.+.+.+.|++++.+++|+++..+++.+.+++.+ | .+++|+.||.|+|.|+.-.
T Consensus 150 g~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 150 CWVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred cccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 457899999999999999999999999999998776666666543 4 3699999999999998654
No 77
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.17 E-value=4.1e-10 Score=122.89 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=56.3
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC----eEEEcCeEEEccCCChHHHHH
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G----~~i~a~lVV~AdG~~S~v~~~ 266 (535)
+..+|+.++...+.+.+.+.|++++.+++|+++..+++.+.|++.++ .+++|+.||.|+|.|+.-...
T Consensus 149 dg~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 149 DCWVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred CeeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 34578999999999999999999999999999987776666766543 369999999999999865533
No 78
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.16 E-value=6.4e-10 Score=122.41 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=54.9
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--eEEEcCeEEEccCCChHHHHH
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~---~G--~~i~a~lVV~AdG~~S~v~~~ 266 (535)
+..+|+.++...+.+.+.++|++++.+++|+++..++++++ |++. ++ .+++|+.||.|+|.|+.-...
T Consensus 143 dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~ 216 (546)
T PRK11101 143 DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAE 216 (546)
T ss_pred CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHH
Confidence 35689999999999999999999999999999987766543 3332 23 479999999999999876544
No 79
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.16 E-value=6.5e-10 Score=121.33 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=89.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC--CCCCc---ccccccH-HHHHHHHHcCCCChHhHHHHHhhhcCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT--LKGRE---QEWNISR-KELLELVESGILVEDDIDEATATKFNPN 182 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~--~~~~~---~~~~is~-~~l~~L~~lGl~~~~~~~~~~~~~~~~~ 182 (535)
+||||||| |+||+.+|+.+|+.|.+|+|||++. ++... ....+.. +.++++..+|-......+.. ...+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~-giq~r-- 80 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT-GIQFR-- 80 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc-cCcee--
Confidence 69999999 9999999999999999999999973 22211 1111111 12233322332111111110 00010
Q ss_pred cccccccCc-ceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCC
Q 009427 183 RCGFEGKGE-IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~ 259 (535)
.... ..+. .+ .....+|+..+...+.+.+.+. |++++ +++|+++..+++.+. |.+.+|..+.|+.||+|+|.
T Consensus 81 ~ln~-skGpAV~---s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 81 MLNT-SKGPAVR---ALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred eccc-CCCCcee---CcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 0000 0111 11 1123588889999999888876 66775 567899877766654 66778889999999999998
Q ss_pred Ch
Q 009427 260 FS 261 (535)
Q Consensus 260 ~S 261 (535)
++
T Consensus 156 FL 157 (618)
T PRK05192 156 FL 157 (618)
T ss_pred ch
Confidence 75
No 80
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.13 E-value=1.2e-09 Score=123.22 Aligned_cols=63 Identities=19% Similarity=0.105 Sum_probs=55.6
Q ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v 263 (535)
..+++..+.+.|.+.+.+ |++++++++|++++.++++++|.+++|..++|+.||.|+|.++.-
T Consensus 403 G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 403 GWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAAR 465 (662)
T ss_pred CeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCccc
Confidence 457899999999999988 999999999999988888888888777778899999999998853
No 81
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.11 E-value=2.1e-09 Score=114.20 Aligned_cols=66 Identities=20% Similarity=0.091 Sum_probs=54.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-----eEEEcCeEEEccCCChHHHHH
Q 009427 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 201 ~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-----~~i~a~lVV~AdG~~S~v~~~ 266 (535)
.+++.++...|.+.+.+.|++++++++|++++.+++++++.+.++ .+++|+.||+|+|.++.....
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~ 263 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAA 263 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHH
Confidence 468889999999999999999999999999987777776655432 369999999999999865544
No 82
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.11 E-value=2e-09 Score=116.75 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=56.1
Q ss_pred ccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCe-EEEEEc---CCe--EEEcCeEEEccCCChHHHHHhC
Q 009427 199 NLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDAMGNFSPVVKQAF 268 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~g-v~v~~~---~G~--~i~a~lVV~AdG~~S~v~~~~~ 268 (535)
+..+|+..+.+.|.+.+.+.| ++++++++|++++.++++ +.+.+. +|+ +++|++||+|+|.+|.-..+.+
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~ 253 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKS 253 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 446899999999999998887 799999999999876664 655543 353 6999999999999987666544
No 83
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.10 E-value=2.3e-09 Score=113.89 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=51.5
Q ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeE-EEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA-VLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv-~v~~~~G~~i~a~lVV~AdG~~S~v~~~ 266 (535)
..+++..+...|.+.+.+.|++++++++|++++..+ +.+ .|.+.+| ++.|+.||+|+|.++....+
T Consensus 178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~ 245 (407)
T TIGR01373 178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAA 245 (407)
T ss_pred CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHH
Confidence 457888888899999999999999999999997543 443 3666556 69999988888878765444
No 84
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.08 E-value=3.4e-09 Score=114.83 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=56.9
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEc---CC--eEEEcCeEEEccCCChHHHHHhCC
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNFSPVVKQAFP 269 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~---~G--~~i~a~lVV~AdG~~S~v~~~~~p 269 (535)
...+|+..+.+.|.+.+.+.|++++++++|++++.+++ ++.+.+. +| .+++|+.||+|.|.+|.-..+.+.
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~G 248 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSG 248 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcC
Confidence 34589999999999999999999999999999987554 4666532 23 369999999999999876665443
No 85
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.06 E-value=4.9e-09 Score=113.46 Aligned_cols=68 Identities=18% Similarity=0.102 Sum_probs=56.1
Q ss_pred cccCHHHHHHHHHHHHHh----CC--CEEEeCceEEEEEEe-CCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhC
Q 009427 200 LGVSPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAF 268 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~----~G--~~i~~~~~V~~i~~~-~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~ 268 (535)
..+|+..+.+.+.+.+.+ .| ++++++++|++|+.+ ++.+.|++.+| +++|+.||.|+|.||....+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHh
Confidence 358999999999999988 77 678999999999876 44567777666 6999999999999997655533
No 86
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.04 E-value=2.2e-09 Score=112.20 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=48.8
Q ss_pred ccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427 199 NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v 263 (535)
...+|+..++..|.+.+.+. |++++++++|++++. + .|.+.+| +++|+.||.|+|.++.-
T Consensus 139 ~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~~ 199 (365)
T TIGR03364 139 ELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFET 199 (365)
T ss_pred CeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChhh
Confidence 34589999999999988775 999999999999853 2 4566555 57899999999998753
No 87
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.04 E-value=3.5e-09 Score=105.31 Aligned_cols=152 Identities=21% Similarity=0.281 Sum_probs=96.7
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc----ccH-------------HHHHHHHHc-------
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN----ISR-------------KELLELVES------- 163 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~----is~-------------~~l~~L~~l------- 163 (535)
..+|||||| |+-|+++|++|||+|.+++++|+.+++......+ |-+ +.++.+.++
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 468999999 9999999999999999999999997653211110 111 112222111
Q ss_pred -----CCCC---h--HhHHHHH------------------hhhcCCCcccccccCcceeeeccccccCHHHHHHHHHHHH
Q 009427 164 -----GILV---E--DDIDEAT------------------ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRF 215 (535)
Q Consensus 164 -----Gl~~---~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a 215 (535)
+++. . .+++... ...|. ....+. ++..-..+..+..+++.+-+..+...+
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP-~~~~l~-d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFP-SNIPLP-DGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCC-CCccCC-cchhhcccccccEeeHHHHHHHHHHHH
Confidence 1110 1 1111110 01121 111111 111112233445578889999999999
Q ss_pred HhCCCEEEeCceEEEEEE---eCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427 216 ISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (535)
Q Consensus 216 ~~~G~~i~~~~~V~~i~~---~~~gv~v~~~~G~~i~a~lVV~AdG~~S~ 262 (535)
++.|+.++.+.+|+.+.. ++..+.|.+.+|..+.|+.+|.+.|+|-.
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~ 213 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN 213 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence 999999999999988763 23457788888888999999999999853
No 88
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.02 E-value=5.3e-09 Score=111.29 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=54.0
Q ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHHHH
Q 009427 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK 265 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v~~ 265 (535)
..+|+..+.+.|.+.+.+.|++++++++|++++.+++++. |++. +.+++|+.||+|+|.++....
T Consensus 196 g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~ 261 (416)
T PRK00711 196 ETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALL 261 (416)
T ss_pred ccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHH
Confidence 3578899999999999999999999999999987777654 5554 447999999999999986543
No 89
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.99 E-value=5.1e-09 Score=108.78 Aligned_cols=141 Identities=19% Similarity=0.222 Sum_probs=80.7
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEE-cccC-CCCC---cccccccHHH-HHHHHHcCCCChHhHHHHHhhhcCCCcc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIV-ERNT-LKGR---EQEWNISRKE-LLELVESGILVEDDIDEATATKFNPNRC 184 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~li-Er~~-~~~~---~~~~~is~~~-l~~L~~lGl~~~~~~~~~~~~~~~~~~~ 184 (535)
|||||| |.||+.||+++|+.|.+|+|+ ++.. +... +....+.... .+++..+|-+-....+.. ...|
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~-~i~~----- 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADET-GIHF----- 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHH-EEEE-----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHh-hhhh-----
Confidence 899999 999999999999999999999 3321 1111 1111222222 223333342111111110 0111
Q ss_pred cccccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCC
Q 009427 185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 185 ~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~ 259 (535)
.......+.....+...+|+..+.+.+.+.+.+.+ .+++ +.+|+++..+++.+. |.+.+|..+.|+.||+|+|.
T Consensus 75 ~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 75 RMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 11111111111112346899999999999998854 5665 679999988777654 66778999999999999997
No 90
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.98 E-value=7.2e-10 Score=118.52 Aligned_cols=143 Identities=20% Similarity=0.268 Sum_probs=31.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc-------ccHHHHHHHHHcCCCChHhHHHHHhhhcCCCc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISRKELLELVESGILVEDDIDEATATKFNPNR 183 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~-------is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~ 183 (535)
|||||| |++|++||+.+|+.|.+|+||||....++..... ..... .+ ..|+ . ++...+....+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~-~~gi--~---~e~~~~~~~~~~ 72 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QV-IGGI--F---REFLNRLRARGG 72 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HH-HHHH--H---HHHHHST-----
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--cc-CCCH--H---HHHHHHHhhhcc
Confidence 899999 9999999999999999999999987544322111 00000 00 0011 0 111110000000
Q ss_pred ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE---EEEEcCC-eEEEcCeEEEccCC
Q 009427 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLLAEG-KILSSHLIIDAMGN 259 (535)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv---~v~~~~G-~~i~a~lVV~AdG~ 259 (535)
.... ....+.. .+.+++..+...|.+.+.+.|++++.++.|+++..+++.+ ++...+| .+++|+.||||||.
T Consensus 73 ~~~~-~~~~~~~---~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 73 YPQE-DRYGWVS---NVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-ccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 0001100 1345666666777777778899999999999998876543 3333334 57999999999996
Q ss_pred ChHHHHH
Q 009427 260 FSPVVKQ 266 (535)
Q Consensus 260 ~S~v~~~ 266 (535)
..-....
T Consensus 149 g~l~~~a 155 (428)
T PF12831_consen 149 GDLAALA 155 (428)
T ss_dssp -------
T ss_pred ccccccc
Confidence 5433333
No 91
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.98 E-value=1.6e-08 Score=108.24 Aligned_cols=180 Identities=16% Similarity=0.225 Sum_probs=104.5
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCChHHHHHhCCCCCCCCCc
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDR 277 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~~~ 277 (535)
+..+||..+.+.|...|.+.|+.|++++.|++|....++. -|++..| .+++..||+|+|.|...+..+ +....|.
T Consensus 181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m-~gvkvPL-- 256 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAM-AGVKVPL-- 256 (856)
T ss_pred CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhh-cCCcccc--
Confidence 5678999999999999999999999999999998776653 3566545 599999999999998666553 2222221
Q ss_pred eeEEEEEe--cCCCCC-----CChHH--------------HHHHHh--hhccCcc--CC--CCCccchhc------chhc
Q 009427 278 TTYMFTYI--DPQAGS-----PKLEE--------------LLERYW--DLMPEYQ--GV--TLDNLEIQR------VIYG 324 (535)
Q Consensus 278 ~~~~~~y~--~~~~~~-----~~l~~--------------~~~~~~--~~~P~~~--~~--~~~~~~~~r------~~~g 324 (535)
......|. ..++.- +.+.+ .+.+|- .++++.. .+ .+.+..|.. ....
T Consensus 257 ~p~~H~YvvT~~IeGi~s~t~p~irD~DgSvylR~~~~gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~ 336 (856)
T KOG2844|consen 257 VPMHHAYVVTSRIEGVSSLTRPNIRDLDGSVYLRQQGDGILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIE 336 (856)
T ss_pred eeeeeeEEEecccCCccCCCccceecccceEEEEecCCceeccccccCceeccccCCccccccccccHhhhHHHHHHHHH
Confidence 11112221 111100 00000 001110 0111100 00 011122221 0111
Q ss_pred cccCCCC--------CCCCccCCCeeEeecCCCcccccccccch-HHHHHHHHHHHHHHHHHhCCCC
Q 009427 325 IFPTYRD--------SPLPAAFNRILQFGDASGIQSPVSFGGFG-SLTRHLGRLSTGVYEAVRGDFV 382 (535)
Q Consensus 325 ~~P~~~~--------~pl~~~~~rvlliGDAA~~~~P~~G~Gi~-~al~da~~La~~l~~al~~~~~ 382 (535)
.+|.... .|.....|..-++|.+-....-+.+.||| .+|+-+.-+.+.+++++-+|..
T Consensus 337 r~P~l~k~~i~~~v~gpe~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g~p 403 (856)
T KOG2844|consen 337 RVPVLEKAGIKSLVNGPETFTPDHLPIMGESPEVRGYWVACGFNSAGLSFGGGCGKYLAEWIIHGQP 403 (856)
T ss_pred hCchhhhcCccceecCccccCCccccccCCCccccceEEeecCCccceeccCchhHHHHHHhhcCCC
Confidence 2343321 11122247778899999999999999999 6677777778888888877654
No 92
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.95 E-value=2.1e-09 Score=102.61 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=75.3
Q ss_pred EEEc-chHHHHHHHHHHHCCCc-EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcC-CCcccccccC
Q 009427 114 IVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFN-PNRCGFEGKG 190 (535)
Q Consensus 114 vIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~-~~~~~~~~~~ 190 (535)
+||| ||+|+++|+.|.++|.+ |+||||+.-.++ .|..... .. .+....... ..+. +....+....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg--~w~~~~~-~~-----~~~~~~~~~----~~~~~~~~~~~~~~~ 68 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG--VWRRYYS-YT-----RLHSPSFFS----SDFGLPDFESFSFDD 68 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT--HHHCH-T-TT-----T-BSSSCCT----GGSS--CCCHSCHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC--eeEEeCC-CC-----ccccCcccc----ccccCCccccccccc
Confidence 6999 99999999999999999 999999843332 1210000 00 000000000 0000 0000000000
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
.... ...........+.+.+.+.+.+.+..++.+++|+++..+++++.|+++++.+++|+.||+|+|..+
T Consensus 69 ~~~~-~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 69 SPEW-RWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHH-HHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSC
T ss_pred CCCC-CCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccC
Confidence 0000 000111345667788888888888889999999999999999999998888899999999999755
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.95 E-value=1.2e-08 Score=110.29 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=55.6
Q ss_pred cccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEe-CCeEEEEE---cCCe--EEEcCeEEEccCCChHHHHHhCC
Q 009427 200 LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLLL---AEGK--ILSSHLIIDAMGNFSPVVKQAFP 269 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~-~~gv~v~~---~~G~--~i~a~lVV~AdG~~S~v~~~~~p 269 (535)
..+|...+.+.|.+.+.+ .|++++++++|+++..+ ++++++.+ .++. +++||.||+|.|++|.-..+.+.
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~G 255 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSG 255 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence 458999999999999865 48999999999999876 55676653 3342 68999999999999976665443
No 94
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1.9e-08 Score=110.69 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=89.6
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc--------cHH-HHHHHHHc--CCCChHhHHH
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI--------SRK-ELLELVES--GILVEDDIDE 173 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i--------s~~-~l~~L~~l--Gl~~~~~~~~ 173 (535)
.++|||||| |.+|+++|+.+++.|.+|+||||....+++..+ .+ +.. .++.+... |+.+++.++.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 369999999 999999999999999999999998754332211 01 111 12222222 2323322221
Q ss_pred HHhh-----hc-CCCccccccc--Cc-------ceeeecccc---ccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC
Q 009427 174 ATAT-----KF-NPNRCGFEGK--GE-------IWVEDILNL---GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE 235 (535)
Q Consensus 174 ~~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~~~---~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~ 235 (535)
.+.. .| ....+.|... +. .+...+... ...-..+.+.|.+++.+.|+++++++.|+++..++
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~ 174 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDG 174 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC
Confidence 1110 00 0001111110 00 011011000 01235678889998888899999999999998765
Q ss_pred C----eEEEE-----EcCC-eEEEcCeEEEccCCChHH
Q 009427 236 N----AAVLL-----LAEG-KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 236 ~----gv~v~-----~~~G-~~i~a~lVV~AdG~~S~v 263 (535)
+ ++.+. ..++ ..+.|+.||+|||.++.+
T Consensus 175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence 4 23333 1233 468999999999998854
No 95
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.94 E-value=1.2e-08 Score=103.04 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=79.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
|||+||| |++|+++|..|++.|++|+|||+...++. .. .... ...| |. +
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~--~~----------------~~~~-----~~~~-~~---~--- 50 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ--LT----------------TTTE-----VENY-PG---F--- 50 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc--ee----------------eccc-----cccc-CC---C---
Confidence 6999999 99999999999999999999998853221 00 0000 0001 11 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
...+....+...+.+.+.+.|++++. ++|++++.+++.+.+.+.++.++.+|.||.|+|...
T Consensus 51 ---------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 51 ---------PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred ---------CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 00122345556777788888999988 899999877777778777778899999999999754
No 96
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.94 E-value=2.6e-08 Score=111.25 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=54.2
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC--CeEE-EEE---cCCe--EEEcCeEEEccCCChHHHHHh
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPVVKQA 267 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~--~gv~-v~~---~~G~--~i~a~lVV~AdG~~S~v~~~~ 267 (535)
+..+|+.++...+.+.+.+.|++++.+++|+++..++ +.+. |.+ .+++ +++|+.||+|+|+||......
T Consensus 226 Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~ 302 (627)
T PLN02464 226 DGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKM 302 (627)
T ss_pred CcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHh
Confidence 3457999999999999999999999999999998763 4332 333 2343 689999999999998766553
No 97
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.93 E-value=2.3e-08 Score=109.24 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=86.6
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---c--ccHH--------------HHHHHHHcC--CC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---N--ISRK--------------ELLELVESG--IL 166 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~--is~~--------------~l~~L~~lG--l~ 166 (535)
.++|||||| |.+|+++|+.+++.|.+|+||||....++.... . .... .++.+.+.+ ..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 479999999 999999999999999999999998654432111 1 1111 111111111 11
Q ss_pred ChHhHHHHHh-----hhc-CCCcccccc----cCcce--eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe
Q 009427 167 VEDDIDEATA-----TKF-NPNRCGFEG----KGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY 234 (535)
Q Consensus 167 ~~~~~~~~~~-----~~~-~~~~~~~~~----~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~ 234 (535)
+++.+..... ..| ....+.|.. .+... .............+.+.|.+.+.+.|++++.+++|+++..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 1111111100 000 000011100 00000 00000011123467888999999999999999999999765
Q ss_pred CCe---EEEEEcCC--eEEEcCeEEEccCCChH
Q 009427 235 ENA---AVLLLAEG--KILSSHLIIDAMGNFSP 262 (535)
Q Consensus 235 ~~g---v~v~~~~G--~~i~a~lVV~AdG~~S~ 262 (535)
++. +.+...++ .++.|+.||.|+|.++.
T Consensus 220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred CCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 553 33433343 36899999999998764
No 98
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.92 E-value=2.5e-08 Score=107.91 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=85.4
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC--CCCcccc--cc---------------cH-HHHHHHHHc-C-C
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL--KGREQEW--NI---------------SR-KELLELVES-G-I 165 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~--~~~~~~~--~i---------------s~-~~l~~L~~l-G-l 165 (535)
.++|||||| |++|+++|+.++++|.+|+||||... .++...+ ++ +. ..++.+.+. + .
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 368999999 99999999999999999999999852 2221110 00 00 111222111 1 1
Q ss_pred CChHhHHHHHhh-----hc-CCCcccccc--cCcceeee-ccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427 166 LVEDDIDEATAT-----KF-NPNRCGFEG--KGEIWVED-ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN 236 (535)
Q Consensus 166 ~~~~~~~~~~~~-----~~-~~~~~~~~~--~~~~~~~~-~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~ 236 (535)
.+.+.++..+.. .| ....+.|.. .+...... .....-....+...|.+.+++.|++++.+++|+++..+++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g 162 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 111111111110 00 000011110 00000000 0000011356788899999999999999999999987655
Q ss_pred eEE-EEE--cCC--eEEEcCeEEEccCCChH
Q 009427 237 AAV-LLL--AEG--KILSSHLIIDAMGNFSP 262 (535)
Q Consensus 237 gv~-v~~--~~G--~~i~a~lVV~AdG~~S~ 262 (535)
.++ |.+ .++ ..++|+.||+|+|.++.
T Consensus 163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 163 RFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred eEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 443 223 233 46899999999997653
No 99
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.91 E-value=2.8e-08 Score=104.49 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=53.4
Q ss_pred ccccCHHHHHHHHHHHHHhCCC-EEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427 199 NLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~-~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~ 266 (535)
...+|+..+.+.+.+.+.+.|+ .+..++.+..+..+.+.+.|.+.+|. +.|+.||.|+|+++.....
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~ 217 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAA 217 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHH
Confidence 4558899999999999999995 56668899988653245667776665 9999999999999876543
No 100
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.90 E-value=2.8e-08 Score=106.73 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=85.2
Q ss_pred cEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCCcccc------cc-cH-----------H-HHHHHHHc--CCCCh
Q 009427 112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEW------NI-SR-----------K-ELLELVES--GILVE 168 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~~~~~------~i-s~-----------~-~l~~L~~l--Gl~~~ 168 (535)
|||||| |++|+++|+.++++| .+|+||||....++.... .. +. . .++.+.+. +..++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 899999 999999999999999 999999998654332111 00 10 0 11111111 11111
Q ss_pred HhHHHHHhh-----hcCCCcccccc------cCcce--eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC
Q 009427 169 DDIDEATAT-----KFNPNRCGFEG------KGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE 235 (535)
Q Consensus 169 ~~~~~~~~~-----~~~~~~~~~~~------~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~ 235 (535)
+.++..... .|-...+.+.. .+..+ .........+...+.+.|.+.+.+.|++++.+++|+++..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 111111100 00000000100 00000 000001112346788899999999999999999999998765
Q ss_pred Ce----EEEEEcCCe--EEEcCeEEEccCCChH
Q 009427 236 NA----AVLLLAEGK--ILSSHLIIDAMGNFSP 262 (535)
Q Consensus 236 ~g----v~v~~~~G~--~i~a~lVV~AdG~~S~ 262 (535)
++ +++...+++ .+.++.||.|+|.++.
T Consensus 161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 42 334333443 4789999999998875
No 101
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.88 E-value=3.1e-08 Score=105.50 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEE-cCCe--EEEcCeEEEccCCChH-HHHHhCC
Q 009427 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLL-AEGK--ILSSHLIIDAMGNFSP-VVKQAFP 269 (535)
Q Consensus 204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v~~-~~G~--~i~a~lVV~AdG~~S~-v~~~~~p 269 (535)
...+.+.|.+.+++.|++++.+++++++..+++.|+ +.. .+|+ +++|+.||.|+|.++. ..++..|
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~ 212 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYP 212 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-G
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccccccccccc
Confidence 467889999999999999999999999999877543 231 3453 5899999999999994 5555444
No 102
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.87 E-value=3.9e-08 Score=107.02 Aligned_cols=153 Identities=16% Similarity=0.231 Sum_probs=87.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHc--CCCChHhHHHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVES--GILVEDDIDEA 174 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~l--Gl~~~~~~~~~ 174 (535)
++|||||| |++|+++|+.+++.|. |+||||....+....+. + +. ..++.+... ++.+++.++..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 48999999 9999999999999997 99999996544322211 1 11 112222222 23232222211
Q ss_pred Hhh-----hc-CCCccccccc--Cc-------ceeeecc-c-cccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCC
Q 009427 175 TAT-----KF-NPNRCGFEGK--GE-------IWVEDIL-N-LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN 236 (535)
Q Consensus 175 ~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~-~-~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~ 236 (535)
... .| ....+.|... +. .+...+. . .......+.+.|.+++.+ .|+++++++.|+++..+++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 110 00 0001111100 00 0000000 0 011345788889998887 5899999999999976655
Q ss_pred eEE-EEEcC-C--eEEEcCeEEEccCCChHH
Q 009427 237 AAV-LLLAE-G--KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 237 gv~-v~~~~-G--~~i~a~lVV~AdG~~S~v 263 (535)
.+. +.+.+ + ..+.|+.||+|+|.++.+
T Consensus 161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 161 RVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred EEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 443 33322 3 468999999999999864
No 103
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.87 E-value=4.1e-08 Score=108.85 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=86.0
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---c----c-------cHH-HHHHHHH--cCCCChHhHHH
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---N----I-------SRK-ELLELVE--SGILVEDDIDE 173 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~----i-------s~~-~l~~L~~--lGl~~~~~~~~ 173 (535)
|||||| |++|+++|+.+++.|.+|+||||....+....+ + . +.. .++.... .++.+++.++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 899999 999999999999999999999998654322111 0 0 111 1111111 12333222221
Q ss_pred HHhh-----hc-CCCcccccc--cCc-------ceeeeccccc--cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427 174 ATAT-----KF-NPNRCGFEG--KGE-------IWVEDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN 236 (535)
Q Consensus 174 ~~~~-----~~-~~~~~~~~~--~~~-------~~~~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~ 236 (535)
.... .| ..-.+.|.. .+. .+...+..+. .....+...|.+.+.+.|+++++++.++++..+++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g 160 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDDG 160 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCC
Confidence 1110 00 000011110 000 0000010011 12345778888888888999999999999987665
Q ss_pred eEE---E-EEcCCe--EEEcCeEEEccCCChHHH
Q 009427 237 AAV---L-LLAEGK--ILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 237 gv~---v-~~~~G~--~i~a~lVV~AdG~~S~v~ 264 (535)
.++ + ...+|+ .+.|+.||+|+|.++.+.
T Consensus 161 ~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 161 RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY 194 (566)
T ss_pred EEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence 443 1 123453 689999999999987543
No 104
>PLN02661 Putative thiazole synthesis
Probab=98.85 E-value=5.6e-08 Score=99.66 Aligned_cols=217 Identities=14% Similarity=0.219 Sum_probs=114.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
++||+||| |++|+++|+.|++. |++|+||||....++. .|.-. ..+..+ +.. ..... +...+. +.|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG-~~~gg-~l~~~~----vv~-~~a~e-~LeElG---V~fd 160 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG-AWLGG-QLFSAM----VVR-KPAHL-FLDELG---VPYD 160 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc-eeeCc-cccccc----ccc-cHHHH-HHHHcC---CCcc
Confidence 68999999 99999999999986 8999999998643321 22100 000000 000 00000 001110 1111
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE---EEEE----cC--C------eEEEcC
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA---VLLL----AE--G------KILSSH 251 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv---~v~~----~~--G------~~i~a~ 251 (535)
..+ .+. ...+...+...|.+++.+ .|++++.++.|+++..+++.+ ++.. .+ + ..++|+
T Consensus 161 ~~d-gy~-----vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak 234 (357)
T PLN02661 161 EQE-NYV-----VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK 234 (357)
T ss_pred cCC-Cee-----EecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECC
Confidence 011 110 011345566778887765 689999999999998776542 2210 11 1 268999
Q ss_pred eEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCC
Q 009427 252 LIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD 331 (535)
Q Consensus 252 lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~ 331 (535)
.||+|+|+..++....+-... . ..+....+...++ |. . ..++..... .
T Consensus 235 aVVlATGh~g~~ga~~~~~~~----~----~g~~~~~pg~~~~--------~~-~-----~~e~~~v~~--------t-- 282 (357)
T PLN02661 235 VVVSSCGHDGPFGATGVKRLK----S----IGMIDSVPGMKAL--------DM-N-----AAEDAIVRL--------T-- 282 (357)
T ss_pred EEEEcCCCCCcchhhhhhccc----c----cCCccCCCCcccc--------ch-h-----hHHHHHHhc--------c--
Confidence 999999976654333211100 0 0011111110000 00 0 001111000 0
Q ss_pred CCCCccCCCeeEeecCCCcc--cccccccchHHHHHHHHHHHHHHHHHh
Q 009427 332 SPLPAAFNRILQFGDASGIQ--SPVSFGGFGSLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 332 ~pl~~~~~rvlliGDAA~~~--~P~~G~Gi~~al~da~~La~~l~~al~ 378 (535)
....+++++.|-|+..+ .|=.|-=|+.++.+....|+.|.+.|+
T Consensus 283 ---~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 283 ---REVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred ---CcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 11146788888887654 355565666778888889998888775
No 105
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=4.5e-08 Score=108.59 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=86.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccc---cc-----------cHH-HHHHHHH--cCCCChH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEW---NI-----------SRK-ELLELVE--SGILVED 169 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~---~i-----------s~~-~l~~L~~--lGl~~~~ 169 (535)
++|||||| |++|+++|+.+++. |.+|+||||....++...+ ++ +.. .++.... .++.+++
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 58999999 99999999999987 4899999998653322111 11 011 1111111 1232332
Q ss_pred hHHHHHhh-----hc-CCCccccccc--Cc-------ceeeeccccccC--HHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q 009427 170 DIDEATAT-----KF-NPNRCGFEGK--GE-------IWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSIC 232 (535)
Q Consensus 170 ~~~~~~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~~~~v~--~~~l~~~L~~~a~~~G~~i~~~~~V~~i~ 232 (535)
.++..... .+ ..-.+.|... +. .+...+..+..+ ...+.+.|.+++.+.|+++++++.|+++.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~ 162 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI 162 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence 22211110 00 0001111110 00 000011111112 25677888888888899999999999997
Q ss_pred EeCCeEE----EEEcCCe--EEEcCeEEEccCCChHH
Q 009427 233 TYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 233 ~~~~gv~----v~~~~G~--~i~a~lVV~AdG~~S~v 263 (535)
.+++.+. +...+|+ .+.|+.||.|+|.++.+
T Consensus 163 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 163 LEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 7655432 2233553 58999999999998754
No 106
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.84 E-value=3.9e-08 Score=107.39 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=86.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-----ccccccHH-HHHHHHHcCCCChHhHHHHHh--hhcCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-----QEWNISRK-ELLELVESGILVEDDIDEATA--TKFNP 181 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-----~~~~is~~-~l~~L~~lGl~~~~~~~~~~~--~~~~~ 181 (535)
||||||| |++|+.+|..+++.|.+|+|+|++....+. ....+... ..+++..+|-......+.... +..++
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 7999999 999999999999999999999987421111 11111111 122222223111111111100 11111
Q ss_pred CcccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEe-CCe-EEEEEcCCeEEEcCeEEEccC
Q 009427 182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTY-ENA-AVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~-~~g-v~v~~~~G~~i~a~lVV~AdG 258 (535)
. .+... ......+|+..+.+.+.+.+.+. +++++ ..+|+++..+ ++. ..|.+.+|..+.|+.||+|+|
T Consensus 81 s------kgpAV--~~~RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATG 151 (617)
T TIGR00136 81 S------KGPAV--RATRAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTG 151 (617)
T ss_pred C------CCCcc--cccHHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccC
Confidence 1 11110 11234689999999999999888 55666 4578887665 333 346667788899999999999
Q ss_pred CCh
Q 009427 259 NFS 261 (535)
Q Consensus 259 ~~S 261 (535)
.+.
T Consensus 152 tfL 154 (617)
T TIGR00136 152 TFL 154 (617)
T ss_pred ccc
Confidence 995
No 107
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.83 E-value=5.6e-08 Score=107.86 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=87.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHcC--CCChHhHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---I--------SR-KELLELVESG--ILVEDDID 172 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~lG--l~~~~~~~ 172 (535)
++|||||| |.+|+++|+.+++. |.+|+||||....+....+. + +. ..++.....| +.+++.++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 83 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE 83 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 68999999 99999999999987 58999999986544322111 0 11 1122222222 32322221
Q ss_pred HHHh-----hhc-CCCcccccc--cCc-------ceeeeccccccC--HHHHHHHHHHHHHhC-CCEEEeCceEEEEEEe
Q 009427 173 EATA-----TKF-NPNRCGFEG--KGE-------IWVEDILNLGVS--PAKLIEIVKKRFISL-GGVIFEGYSVSSICTY 234 (535)
Q Consensus 173 ~~~~-----~~~-~~~~~~~~~--~~~-------~~~~~~~~~~v~--~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~ 234 (535)
..+. ..| ..-.+.|.. .+. .+...+.....+ -..+...|.+++.+. ++++++++.++++..+
T Consensus 84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 163 (582)
T PRK09231 84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD 163 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe
Confidence 1110 000 000111110 000 000000000011 245777888877775 7899999999999876
Q ss_pred CCeEE----EEEcCC--eEEEcCeEEEccCCChHHH
Q 009427 235 ENAAV----LLLAEG--KILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 235 ~~gv~----v~~~~G--~~i~a~lVV~AdG~~S~v~ 264 (535)
++.+. +...+| ..+.|+.||.|||.++.+.
T Consensus 164 ~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 164 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 65443 233455 4689999999999988653
No 108
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.83 E-value=7.4e-08 Score=103.21 Aligned_cols=152 Identities=19% Similarity=0.228 Sum_probs=84.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---ccc--------HHHHHHHHHcC--CCChHhHHHHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NIS--------RKELLELVESG--ILVEDDIDEAT 175 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~is--------~~~l~~L~~lG--l~~~~~~~~~~ 175 (535)
++|||||| |.+|+++|+.++ .|.+|+||||....+.+... .+. ...++.+...| ..+++.++..+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~ 82 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA 82 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 68999999 999999999975 79999999998654433211 110 11122222222 11222121111
Q ss_pred h-----hhc-CCCcccccccC-------c-ceeeecc--ccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE
Q 009427 176 A-----TKF-NPNRCGFEGKG-------E-IWVEDIL--NLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA 238 (535)
Q Consensus 176 ~-----~~~-~~~~~~~~~~~-------~-~~~~~~~--~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv 238 (535)
. ..| ....+.|.... . .+...+. ........+.+.|.+++++ .|++++++++|+++..+++.+
T Consensus 83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v 162 (433)
T PRK06175 83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTC 162 (433)
T ss_pred HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEE
Confidence 0 000 00001111000 0 0000000 0111235677888888875 489999999999997665543
Q ss_pred E--EEEcCCe--EEEcCeEEEccCCChH
Q 009427 239 V--LLLAEGK--ILSSHLIIDAMGNFSP 262 (535)
Q Consensus 239 ~--v~~~~G~--~i~a~lVV~AdG~~S~ 262 (535)
. +...+++ .+.|+.||+|+|.++.
T Consensus 163 ~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 163 IGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 2 1122443 6899999999998764
No 109
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.6e-08 Score=99.41 Aligned_cols=112 Identities=24% Similarity=0.311 Sum_probs=78.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
.|||+||| ||+|++||+.++|.|++ ++|+|+...++....+ . + ...|. + +
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~-----------------~-~-----venyp-g---~- 54 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT-----------------T-D-----VENYP-G---F- 54 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc-----------------e-e-----ecCCC-C---C-
Confidence 69999999 99999999999999999 7777776443210000 0 0 01110 0 0
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~ 262 (535)
...+....|.+.+.+.+...|+++.. ..|..++..++..+|.+.+|. ++|+.||+|+|+...
T Consensus 55 -----------~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 55 -----------PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred -----------ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 01133456778888888888888887 778887665546778887776 999999999997653
No 110
>PRK07121 hypothetical protein; Validated
Probab=98.82 E-value=1.2e-07 Score=103.22 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEE-EEE-cCC--eEEEc-CeEEEccCCChH
Q 009427 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LLL-AEG--KILSS-HLIIDAMGNFSP 262 (535)
Q Consensus 204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~-v~~-~~G--~~i~a-~lVV~AdG~~S~ 262 (535)
...+.+.|.+++++.|++++.+++|+++..+++ .++ |.. .++ ..+.| +.||+|+|.++.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 456888899999999999999999999987644 232 222 233 35889 999999998874
No 111
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.81 E-value=3.9e-08 Score=104.31 Aligned_cols=145 Identities=23% Similarity=0.299 Sum_probs=84.1
Q ss_pred EEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc------ccccccHH-HHHHHHH-cCCCChHhHHHHHhhhcCCC-c
Q 009427 114 IVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRK-ELLELVE-SGILVEDDIDEATATKFNPN-R 183 (535)
Q Consensus 114 vIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~------~~~~is~~-~l~~L~~-lGl~~~~~~~~~~~~~~~~~-~ 183 (535)
+||| |++|+++|+.|+++|++|+|+||+...+.. ..+|+... ....+.+ .+- ....+...+ ..|... .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR-NGKFLRSAL-SRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC-CcHHHHHHH-HhCCHHHH
Confidence 6999 999999999999999999999998633221 01111110 0111100 010 011111111 111111 0
Q ss_pred ccccc-cCc-ceee---eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427 184 CGFEG-KGE-IWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 184 ~~~~~-~~~-~~~~---~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG 258 (535)
..|.. .+- .... ......-....+.+.+.+.+.+.|++++.+++|+++..+++.+.+.+ +++++.||.||.|+|
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence 01100 000 0000 00011123467888899999889999999999999977666677766 566799999999999
Q ss_pred CCh
Q 009427 259 NFS 261 (535)
Q Consensus 259 ~~S 261 (535)
.+|
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 876
No 112
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.80 E-value=6.2e-08 Score=106.21 Aligned_cols=113 Identities=24% Similarity=0.290 Sum_probs=83.2
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~ 186 (535)
...|||+||| ||+|+++|..|++.|++|+|+|+. +++. +. ... ++ +. +. . +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG~---~~------~~~---~~------~~-----~~-~---~ 260 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGGQ---VL------DTM---GI------EN-----FI-S---V 260 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCe---ee------ccC---cc------cc-----cC-C---C
Confidence 4469999999 999999999999999999999864 2221 00 000 00 00 00 0 0
Q ss_pred cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
. ......+.+.+.+.+.+.|++++.+++|+++...++.+.+.+.+|.++.++.||.|+|...
T Consensus 261 ---------~----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 261 ---------P----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred ---------C----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 0 0234466788888888899999999999999877677888887788899999999999854
No 113
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.80 E-value=7e-08 Score=103.98 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=86.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHH-HHHHHcCCCCh------HhHHHHHhhhcCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKEL-LELVESGILVE------DDIDEATATKFNP 181 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l-~~L~~lGl~~~------~~~~~~~~~~~~~ 181 (535)
..+|+||| |++|+++|.+|.+.|++|+|+|+....|+ .|+.....- +.+ ++... ...+.. +...|
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG--~W~~~~~~~~d~~---~~~~~~~~~~s~~Y~~L--~tn~p 82 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG--LWVYTPKSESDPL---SLDPTRSIVHSSVYESL--RTNLP 82 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcc--eeecCCCcCCCcc---ccCCCCcccchhhhhhh--hccCC
Confidence 47999999 99999999999999999999999853332 343221100 000 11000 000000 00001
Q ss_pred C-cccccc---cCcce--eeeccccccCHHHHHHHHHHHHHhCCCE--EEeCceEEEEEEeCCeEEEEEcCC----eEEE
Q 009427 182 N-RCGFEG---KGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG----KILS 249 (535)
Q Consensus 182 ~-~~~~~~---~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~--i~~~~~V~~i~~~~~gv~v~~~~G----~~i~ 249 (535)
. ...|.. ..... ..+...+ .....+.+.|.+.+...|.. |+.+++|+++...++.+.|++.++ .+..
T Consensus 83 ~~~m~f~dfp~~~~~~~~~~~~~~f-p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~ 161 (461)
T PLN02172 83 RECMGYRDFPFVPRFDDESRDSRRY-PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEI 161 (461)
T ss_pred HhhccCCCCCCCcccccccCcCCCC-CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEE
Confidence 0 111110 00000 0000011 24567888899888888876 889999999988777888887532 2467
Q ss_pred cCeEEEccCCCh
Q 009427 250 SHLIIDAMGNFS 261 (535)
Q Consensus 250 a~lVV~AdG~~S 261 (535)
+|.||+|+|+++
T Consensus 162 ~d~VIvAtG~~~ 173 (461)
T PLN02172 162 FDAVVVCNGHYT 173 (461)
T ss_pred cCEEEEeccCCC
Confidence 899999999865
No 114
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.80 E-value=7.6e-08 Score=103.31 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=55.7
Q ss_pred cccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--eEEEcCeEEEccCCChHHHHH
Q 009427 198 LNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 198 ~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~---G--~~i~a~lVV~AdG~~S~v~~~ 266 (535)
.++.+|..+|.-.....|.+.|++++..++|+++..+++-+-|.+.| | .+++|+.||.|+|.|+.-..+
T Consensus 157 ~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~ 230 (532)
T COG0578 157 PDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE 230 (532)
T ss_pred ccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHH
Confidence 35668899999999999999999999999999998877723344433 3 369999999999999876555
No 115
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.80 E-value=9.6e-08 Score=106.47 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=86.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcc--cc--cc--------cHH-HHHHHHHc--CCCChHhH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQ--EW--NI--------SRK-ELLELVES--GILVEDDI 171 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~--~~--~i--------s~~-~l~~L~~l--Gl~~~~~~ 171 (535)
++|||||| |.||+++|+.+++. |.+|+||||....+... .+ .+ +.. .++.+... ++.+++.+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 58999999 99999999999998 99999999986532221 00 01 111 11222211 22222222
Q ss_pred HHHHhh------hcCCCcccccc--cCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEE---
Q 009427 172 DEATAT------KFNPNRCGFEG--KGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV--- 239 (535)
Q Consensus 172 ~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~--- 239 (535)
+..+.. .+....+.|.. .+..+........++...+.+.|.+.+++.+ ++++.++.|+++..+++.+.
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~ 170 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV 170 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 111110 00000111110 0111000000011345667788888888876 99999999999976665432
Q ss_pred E-EEcCCe--EEEcCeEEEccCCChH
Q 009427 240 L-LLAEGK--ILSSHLIIDAMGNFSP 262 (535)
Q Consensus 240 v-~~~~G~--~i~a~lVV~AdG~~S~ 262 (535)
+ ...+++ .+.|+.||+|+|.++.
T Consensus 171 ~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEccCCcEEEEECCEEEECCCchhh
Confidence 1 223443 6899999999998764
No 116
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.78 E-value=1.2e-07 Score=105.06 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=87.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHcC--CCChHhHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---I--------SR-KELLELVESG--ILVEDDID 172 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~lG--l~~~~~~~ 172 (535)
++|||||| |++|+++|+.+++. |.+|+||||....+....+. + +. ..++.....| +.+++.++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 58999999 99999999999987 68999999986544322111 1 11 1122222222 32322222
Q ss_pred HHHhh-----hc-CCCccccccc--Cc-------ceeeecccccc--CHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEe
Q 009427 173 EATAT-----KF-NPNRCGFEGK--GE-------IWVEDILNLGV--SPAKLIEIVKKRFISL-GGVIFEGYSVSSICTY 234 (535)
Q Consensus 173 ~~~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~~~~v--~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~ 234 (535)
..+.. .+ ..-.+.|... +. .+...+..... .-..+.+.|.+++.+. ++++++++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 11110 00 0001111100 00 00000000001 2346788888888764 7899999999999876
Q ss_pred CCeEE----EEEcCC--eEEEcCeEEEccCCChHH
Q 009427 235 ENAAV----LLLAEG--KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 235 ~~gv~----v~~~~G--~~i~a~lVV~AdG~~S~v 263 (535)
++.+. +...+| ..+.|+.||.|||.++.+
T Consensus 163 ~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 163 DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 65443 223355 468999999999998865
No 117
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.78 E-value=1.5e-07 Score=101.90 Aligned_cols=153 Identities=23% Similarity=0.284 Sum_probs=86.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcc--cccc--------cH-HHHHHHHHc--CCCChHhHHHHHh
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNI--------SR-KELLELVES--GILVEDDIDEATA 176 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~--~~~i--------s~-~~l~~L~~l--Gl~~~~~~~~~~~ 176 (535)
+|||||| |++|+++|+.+++.|.+|+||||....+... ...+ +. ..++..... ++.+++.+...+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6999999 9999999999999999999999985322110 0111 00 112121111 2223222221111
Q ss_pred h-----hc-CCCccccccc--Ccceeeecc-c-cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCC
Q 009427 177 T-----KF-NPNRCGFEGK--GEIWVEDIL-N-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG 245 (535)
Q Consensus 177 ~-----~~-~~~~~~~~~~--~~~~~~~~~-~-~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G 245 (535)
. .| ..-.+.|... ...+...+. . .......+.+.|.+.+.+.|++++++ .++.+..+++.++ +.+ ++
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence 0 00 0001111100 000000000 0 01123568888999998899999876 7888876555544 333 56
Q ss_pred eEEEcCeEEEccCCChHHHH
Q 009427 246 KILSSHLIIDAMGNFSPVVK 265 (535)
Q Consensus 246 ~~i~a~lVV~AdG~~S~v~~ 265 (535)
..+.++.||+|+|.++....
T Consensus 160 ~~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 160 ELLKFDATVIATGGFSGLFK 179 (466)
T ss_pred EEEEeCeEEECCCcCcCCCC
Confidence 78999999999999987543
No 118
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=1.5e-07 Score=104.21 Aligned_cols=154 Identities=14% Similarity=0.197 Sum_probs=86.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc------------cHH-HHHHHHHcC--CCChHh
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI------------SRK-ELLELVESG--ILVEDD 170 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i------------s~~-~l~~L~~lG--l~~~~~ 170 (535)
++|||||| |.+|+++|+.+++.|.+|+||||....+.+..+ .+ +.. .++.....| +.+++.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 58999999 999999999999999999999998543332111 01 001 111111112 222222
Q ss_pred HHHHHhh-----hc-CCCccccccc--Cc-------ceeeeccccc--cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE
Q 009427 171 IDEATAT-----KF-NPNRCGFEGK--GE-------IWVEDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSVSSICT 233 (535)
Q Consensus 171 ~~~~~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~ 233 (535)
++..+.. .| ..-.+.|... +. .....+..+. -.-..+...|.+++.+.|+++++++.++++..
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~ 164 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVT 164 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEE
Confidence 2111110 00 0001111100 00 0000000000 11245778888888888999999999999987
Q ss_pred eCCeEE---EEE-cCC--eEEEcCeEEEccCCChHH
Q 009427 234 YENAAV---LLL-AEG--KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 234 ~~~gv~---v~~-~~G--~~i~a~lVV~AdG~~S~v 263 (535)
+++.++ +.. .+| ..+.|+.||.|+|.++.+
T Consensus 165 ~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 165 DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred ECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 655433 222 233 358999999999988743
No 119
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.78 E-value=1.6e-07 Score=104.82 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=87.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----------cH-HHHHHHHHc--CCCChHhHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----------SR-KELLELVES--GILVEDDID 172 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----------s~-~~l~~L~~l--Gl~~~~~~~ 172 (535)
++|||||| |.||+++|+.+++.|.+|+||||....++...+. + +. ..++..... |+.+++.++
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999 9999999999999999999999986544321110 0 01 111222221 233333222
Q ss_pred HHHhh-----hc-CCCcccccc--cCc-------ceee--------ecccccc--CHHHHHHHHHHHHHhCCCEEEeCce
Q 009427 173 EATAT-----KF-NPNRCGFEG--KGE-------IWVE--------DILNLGV--SPAKLIEIVKKRFISLGGVIFEGYS 227 (535)
Q Consensus 173 ~~~~~-----~~-~~~~~~~~~--~~~-------~~~~--------~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~ 227 (535)
..... .| ..-.+.|.. .+. .+.. .+..+.. .-..+...|.+++.+.|+++++++.
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 188 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYF 188 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceE
Confidence 11110 00 000111110 000 0000 0000001 1246788899999899999999999
Q ss_pred EEEEEEe-CCeEE---E-EEcCC--eEEEcCeEEEccCCChHH
Q 009427 228 VSSICTY-ENAAV---L-LLAEG--KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 228 V~~i~~~-~~gv~---v-~~~~G--~~i~a~lVV~AdG~~S~v 263 (535)
++++..+ ++.+. + ...+| ..+.|+.||+|+|.+...
T Consensus 189 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 189 ALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred EEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 9998873 33332 2 22355 368999999999988643
No 120
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=1e-07 Score=105.84 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=85.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCC---CcEEEEcccCCCCCcccc---c----cc------HH-HHHHHHHc--CCCChH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKG---LRVAIVERNTLKGREQEW---N----IS------RK-ELLELVES--GILVED 169 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G---~~V~liEr~~~~~~~~~~---~----is------~~-~l~~L~~l--Gl~~~~ 169 (535)
++|||||| |+||+++|+.+++.| .+|+||||....+....+ . +. .. .++..... |+.+++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~~ 84 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQD 84 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCHH
Confidence 58999999 999999999999998 899999998654432211 0 11 11 11111111 232322
Q ss_pred hHHHHHhh-----hc-CCCcccccc--cCcc-------eeeecccccc--CHHHHHHHHHHHHHh-CCCEEEeCceEEEE
Q 009427 170 DIDEATAT-----KF-NPNRCGFEG--KGEI-------WVEDILNLGV--SPAKLIEIVKKRFIS-LGGVIFEGYSVSSI 231 (535)
Q Consensus 170 ~~~~~~~~-----~~-~~~~~~~~~--~~~~-------~~~~~~~~~v--~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i 231 (535)
.+...+.. .| ..-.+.|.. .+.. ....+..+.- ....+.+.|.+++.+ .|+++++++.++++
T Consensus 85 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~L 164 (577)
T PRK06069 85 AVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSL 164 (577)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEEE
Confidence 22211110 00 000111110 0000 0000000000 124477788888766 58999999999999
Q ss_pred EEeCCeEE---E-EEcCCe--EEEcCeEEEccCCChHH
Q 009427 232 CTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 232 ~~~~~gv~---v-~~~~G~--~i~a~lVV~AdG~~S~v 263 (535)
..+++.++ + ...+|+ .+.|+.||+|||.++.+
T Consensus 165 i~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 165 IVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 87655432 2 223553 58999999999998654
No 121
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=9e-08 Score=106.57 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=86.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----------cHH-HHHHHHHc--CCCChHhHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----------SRK-ELLELVES--GILVEDDID 172 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----------s~~-~l~~L~~l--Gl~~~~~~~ 172 (535)
++|||||| |.+|+++|+.+++.|.+|+||||....+....+. + +.. .++..... ++.+++.++
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 91 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE 91 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 69999999 9999999999999999999999986433321110 1 111 11122221 232322221
Q ss_pred HHHhh-----hc-CCCcccccc--cCc-------cee--------eecccccc--CHHHHHHHHHHHHHhCCCEEEeCce
Q 009427 173 EATAT-----KF-NPNRCGFEG--KGE-------IWV--------EDILNLGV--SPAKLIEIVKKRFISLGGVIFEGYS 227 (535)
Q Consensus 173 ~~~~~-----~~-~~~~~~~~~--~~~-------~~~--------~~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~ 227 (535)
..... .+ ..-.+.|.. .+. .+. ..+..+.. .-..+...|.+.+.+.|+++++++.
T Consensus 92 ~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~~ 171 (598)
T PRK09078 92 YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYF 171 (598)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeEE
Confidence 11100 00 000011110 000 000 00000000 1245788898889888999999999
Q ss_pred EEEEEEeCCe-EE---E-EEcCCe--EEEcCeEEEccCCChHH
Q 009427 228 VSSICTYENA-AV---L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 228 V~~i~~~~~g-v~---v-~~~~G~--~i~a~lVV~AdG~~S~v 263 (535)
++++..++++ ++ + ...+|. .+.|+.||.|+|.+...
T Consensus 172 v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 172 ALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 9999876533 32 2 123553 68999999999998754
No 122
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.76 E-value=2e-07 Score=104.16 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=87.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc----------cHH-HHHHHHHc--CCCChHhHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI----------SRK-ELLELVES--GILVEDDID 172 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i----------s~~-~l~~L~~l--Gl~~~~~~~ 172 (535)
++|||||| |.||+++|+.+++.|.+|+||||....+....+ .+ +.. .++..... |+.+++.++
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 58999999 999999999999999999999998654432111 00 111 12222222 233333222
Q ss_pred HHHhh-----hc-CCCcccccccCc---------cee--------eeccccc--cCHHHHHHHHHHHHHhCCCEEEeCce
Q 009427 173 EATAT-----KF-NPNRCGFEGKGE---------IWV--------EDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYS 227 (535)
Q Consensus 173 ~~~~~-----~~-~~~~~~~~~~~~---------~~~--------~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~ 227 (535)
..+.. .+ ..-.+.|..... .+. ..+..+. -.-..+.+.|.+++.+.|+++++++.
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 209 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF 209 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence 11110 00 000111211000 000 0000000 01245778898888888999999999
Q ss_pred EEEEEEeCCe-EE---EEE-cCC--eEEEcCeEEEccCCChHH
Q 009427 228 VSSICTYENA-AV---LLL-AEG--KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 228 V~~i~~~~~g-v~---v~~-~~G--~~i~a~lVV~AdG~~S~v 263 (535)
++++..++++ +. +.. .+| ..+.|+.||.|||.+...
T Consensus 210 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 210 ALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred EEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 9998776333 32 211 245 368999999999998754
No 123
>PLN02815 L-aspartate oxidase
Probab=98.74 E-value=1.3e-07 Score=104.89 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=88.4
Q ss_pred CCCCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHcC--CCChH
Q 009427 105 DKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVESG--ILVED 169 (535)
Q Consensus 105 ~~~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~lG--l~~~~ 169 (535)
+....++|||||| |.+|+++|+.+++.| +|+||||....+++..+. + +. ..++.....| +.+++
T Consensus 24 ~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~ 102 (594)
T PLN02815 24 DESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEE 102 (594)
T ss_pred cCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHH
Confidence 3345579999999 999999999999999 999999987644322211 1 11 1222222222 32332
Q ss_pred hHHHHHh-----hhc-CCCccccccc--C-------cceeeeccc--cccCHHHHHHHHHHHHHhC-CCEEEeCceEEEE
Q 009427 170 DIDEATA-----TKF-NPNRCGFEGK--G-------EIWVEDILN--LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSI 231 (535)
Q Consensus 170 ~~~~~~~-----~~~-~~~~~~~~~~--~-------~~~~~~~~~--~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i 231 (535)
.++..+. ..| ....+.|... + ..+...+.. ....-..+...|.+++.+. |+++++++.++++
T Consensus 103 lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~L 182 (594)
T PLN02815 103 TVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDL 182 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhee
Confidence 2221111 000 0001111100 0 000000100 0112345778888888765 8899999999999
Q ss_pred EEeCCe----EE-EE---EcCCe--EEEcCeEEEccCCChHH
Q 009427 232 CTYENA----AV-LL---LAEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 232 ~~~~~g----v~-v~---~~~G~--~i~a~lVV~AdG~~S~v 263 (535)
..++++ ++ +. ..+|. .+.|+.||.|+|.+..+
T Consensus 183 i~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 183 LTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 875432 22 11 22453 57999999999988754
No 124
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=2.2e-07 Score=104.10 Aligned_cols=55 Identities=9% Similarity=0.213 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE---cCC--eEEEcCeEEEccCCChHH
Q 009427 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEG--KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 209 ~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~---~~G--~~i~a~lVV~AdG~~S~v 263 (535)
+.|.+.+.+.|+++++++.++++..+++.++ |.+ .+| ..+.|+.||+|+|.++.+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 5666677788999999999999987655433 222 245 368999999999998754
No 125
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=2.6e-07 Score=102.68 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=86.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc----------cHH-HHHHHHHc--CCCChHhHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI----------SRK-ELLELVES--GILVEDDID 172 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i----------s~~-~l~~L~~l--Gl~~~~~~~ 172 (535)
++|||||| |.||+++|+.+++.|.+|+||||....++...+ .+ +.. .++...+. |+.+++.++
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999 999999999999999999999998544332111 01 111 11222221 232332222
Q ss_pred HHHhh-----hc-CCCccccccc--Cc-------ceee-------ecccccc--CHHHHHHHHHHHHHhCCCEEEeCceE
Q 009427 173 EATAT-----KF-NPNRCGFEGK--GE-------IWVE-------DILNLGV--SPAKLIEIVKKRFISLGGVIFEGYSV 228 (535)
Q Consensus 173 ~~~~~-----~~-~~~~~~~~~~--~~-------~~~~-------~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~V 228 (535)
..+.. .| ..-.+.|... +. .+.. .+..+.. .-..+...|.+++.+.|+++++++.+
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~ 166 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence 11110 00 0001111100 00 0000 0000001 12467788888888889999999999
Q ss_pred EEEEEeCCe-EE---E-EEcCC--eEEEcCeEEEccCCChHH
Q 009427 229 SSICTYENA-AV---L-LLAEG--KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 229 ~~i~~~~~g-v~---v-~~~~G--~~i~a~lVV~AdG~~S~v 263 (535)
+++..++++ ++ + ...+| ..+.|+.||.|+|.++.+
T Consensus 167 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 167 LDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 999875443 22 2 12345 358999999999998754
No 126
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.73 E-value=1.5e-07 Score=103.08 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=81.1
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~ 186 (535)
...|||+||| ||+|+++|..|++.|++|+|+|.. +++... + . .++ . .+. . +
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG~~~--~-------~---~~~------~-----~~~-~---~ 261 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGGQVK--D-------T---VGI------E-----NLI-S---V 261 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCccc--c-------C---cCc------c-----ccc-c---c
Confidence 3469999999 999999999999999999999753 222100 0 0 010 0 000 0 0
Q ss_pred cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
. ......+.+.+.+.+.+.|++++.+++|+++..+++.+.+.+++|.++.+|.+|.|+|+..
T Consensus 262 ---------~----~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 262 ---------P----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred ---------C----CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0 0123456677777788889999999999999877667778887788899999999999753
No 127
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=2.1e-07 Score=104.05 Aligned_cols=153 Identities=17% Similarity=0.249 Sum_probs=84.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---c----c-------c-HHHHHHHHHc--CCCChHhH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---N----I-------S-RKELLELVES--GILVEDDI 171 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~----i-------s-~~~l~~L~~l--Gl~~~~~~ 171 (535)
++|||||| |.||+++|+.+++.|.+|+||||....+.+..+ + + + ...++..... ++.+.+.+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~v 87 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRMA 87 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHHH
Confidence 68999999 999999999999999999999998654332111 0 0 1 1112222221 23232222
Q ss_pred HHHHh------hhcCCCcccccc--cCcc-------eeeecccc--ccCHHHHHHHHHHHHHhC--------C-----CE
Q 009427 172 DEATA------TKFNPNRCGFEG--KGEI-------WVEDILNL--GVSPAKLIEIVKKRFISL--------G-----GV 221 (535)
Q Consensus 172 ~~~~~------~~~~~~~~~~~~--~~~~-------~~~~~~~~--~v~~~~l~~~L~~~a~~~--------G-----~~ 221 (535)
+..+. .....-.+.|.. .+.. +...+... .-....+.+.|.+.+.+. | ++
T Consensus 88 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~ 167 (626)
T PRK07803 88 ELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIK 167 (626)
T ss_pred HHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCceE
Confidence 11110 000000111110 0000 00000000 011245777788777666 6 89
Q ss_pred EEeCceEEEEEEeCCeEE---E-EEcCCe--EEEcCeEEEccCCChH
Q 009427 222 IFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSP 262 (535)
Q Consensus 222 i~~~~~V~~i~~~~~gv~---v-~~~~G~--~i~a~lVV~AdG~~S~ 262 (535)
++.++.|+++..+++.+. + ...+|+ .+.|+.||+|+|.++.
T Consensus 168 i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 168 VFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred EEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 999999999987655332 1 123453 6899999999998543
No 128
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.72 E-value=1.9e-07 Score=100.60 Aligned_cols=138 Identities=20% Similarity=0.280 Sum_probs=72.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc-cccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW-NISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~-~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
+|||+||| ||+|+++|+.++++|++|+|+|++.+++..... .+....+-.-. .+ ...++.. ..|. +...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a--~~--~~~~~~~--~~~g---~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGS--TF--GGEFEDA--AGYG---WTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHH--HH--HHHHhhh--HhcC---cCCC
Confidence 59999999 999999999999999999999997665532111 11111111000 00 0000000 0010 0000
Q ss_pred ccCcceeeeccccc-cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 188 ~~~~~~~~~~~~~~-v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
..+.-........ -....+.+.+.+.+.+.|++++.+ +++.+ +.+.+.+. .+|+++++|.||+|+|...
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 73 -KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred -CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence 0000000000000 001223344555566779998866 55555 34445443 3577899999999999653
No 129
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=2.1e-07 Score=102.61 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=86.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC-CCcccc---cc--------cH-HHHHHHHHc--CCCChHhHHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK-GREQEW---NI--------SR-KELLELVES--GILVEDDIDE 173 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~-~~~~~~---~i--------s~-~~l~~L~~l--Gl~~~~~~~~ 173 (535)
++|||||| |.+|+++|+.+ +.|.+|+||||.+.. ++...+ .+ +. ..++.+... ++.+++.++.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~ 85 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence 58999999 99999999999 899999999998642 221111 01 11 112222222 2323322221
Q ss_pred HHhh-----hc-CCCcccccccCc---------ceeeeccccc--cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427 174 ATAT-----KF-NPNRCGFEGKGE---------IWVEDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN 236 (535)
Q Consensus 174 ~~~~-----~~-~~~~~~~~~~~~---------~~~~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~ 236 (535)
.+.. .| ..-.+.|..... .....+..+. .....+...|.+.+.+.|+++++++.++++..+++
T Consensus 86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~ 165 (543)
T PRK06263 86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDEN 165 (543)
T ss_pred HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC
Confidence 1110 00 000011110000 0000000000 11346778888888888999999999999987665
Q ss_pred e-EE---EEE-cCCe--EEEcCeEEEccCCChH
Q 009427 237 A-AV---LLL-AEGK--ILSSHLIIDAMGNFSP 262 (535)
Q Consensus 237 g-v~---v~~-~~G~--~i~a~lVV~AdG~~S~ 262 (535)
+ ++ +.. .+|+ .+.|+.||+|+|.++.
T Consensus 166 ~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 166 REVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred cEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 4 32 111 3453 6899999999999864
No 130
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=3.7e-07 Score=101.57 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=85.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc-------cHHH----HHHHHHc--CCCChHhHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI-------SRKE----LLELVES--GILVEDDID 172 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i-------s~~~----l~~L~~l--Gl~~~~~~~ 172 (535)
++|||||| |.+|+++|+.+++.|.+|+||||....++...+ ++ .... ++..... ++.+++.++
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~ 91 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE 91 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence 68999999 999999999999999999999998543322111 01 1111 1111121 232322222
Q ss_pred HHHh-----hhc-CCCcccccc--cCcc-------eee-------eccccc--cCHHHHHHHHHHHHHhCCCEEEeCceE
Q 009427 173 EATA-----TKF-NPNRCGFEG--KGEI-------WVE-------DILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSV 228 (535)
Q Consensus 173 ~~~~-----~~~-~~~~~~~~~--~~~~-------~~~-------~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V 228 (535)
.... ..+ ..-.+.|.. .+.. +.. .+..+. -.-..+...|.+.+.+.|++++.++.+
T Consensus 92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~~~ 171 (591)
T PRK07057 92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMA 171 (591)
T ss_pred HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCcEE
Confidence 1110 000 000111110 0000 000 000000 012457888888888889999999999
Q ss_pred EEEEEeCCe-E---EE-EEcCCe--EEEcCeEEEccCCChHH
Q 009427 229 SSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 229 ~~i~~~~~g-v---~v-~~~~G~--~i~a~lVV~AdG~~S~v 263 (535)
+++..++++ + .+ ...+|+ .+.|+.||.|+|.++.+
T Consensus 172 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 172 LDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred EEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 999875433 2 22 122453 58899999999998754
No 131
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.67 E-value=2.3e-07 Score=102.53 Aligned_cols=110 Identities=16% Similarity=0.271 Sum_probs=76.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
.|||+||| ||+|+++|..|+++|++|+|||++.+++.... . . .+ ..| |+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~---~----------~---------~i-~~~-pg~----- 54 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITI---T----------S---------EV-VNY-PGI----- 54 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEe---c----------c---------cc-ccC-CCC-----
Confidence 59999999 99999999999999999999998754332100 0 0 00 000 000
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
..+....+.+.+.+.+.+.|++++ +++|+++..+++...+.+.++ ++.++.||+|+|+..
T Consensus 55 -----------~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 55 -----------LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred -----------cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence 012234566777778888899875 678998876555566766555 589999999999864
No 132
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.66 E-value=5.8e-07 Score=99.91 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEEcCCe-EEEc-CeEEEccCCChH
Q 009427 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSS-HLIIDAMGNFSP 262 (535)
Q Consensus 203 ~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v~~~~G~-~i~a-~lVV~AdG~~S~ 262 (535)
+...+.+.|.+.+++.|++++.+++|+++..+++.++ +...++. +++| +.||.|+|.++.
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 3456778899999999999999999999987655432 3322343 5889 999999999975
No 133
>PRK08275 putative oxidoreductase; Provisional
Probab=98.66 E-value=5.9e-07 Score=99.32 Aligned_cols=154 Identities=14% Similarity=0.192 Sum_probs=85.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccc-cc---c---------cHH-HHHHHHHc--CCCChHh
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQE-WN---I---------SRK-ELLELVES--GILVEDD 170 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~-~~---i---------s~~-~l~~L~~l--Gl~~~~~ 170 (535)
++|||||| |.||++||+.+++. |.+|+||||....+.... .. + +.. .++.+... |+.+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 58999999 99999999999987 789999999975322111 10 1 111 11111111 2222222
Q ss_pred HHHHHh------hhcCCCcccccccCc-ceeeec-c---cc--cc-CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427 171 IDEATA------TKFNPNRCGFEGKGE-IWVEDI-L---NL--GV-SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN 236 (535)
Q Consensus 171 ~~~~~~------~~~~~~~~~~~~~~~-~~~~~~-~---~~--~v-~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~ 236 (535)
++.... .......+.|..... .+.... . .+ .. ....+.+.|.+.+.+.|+++++++.|+++..+++
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~ 168 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDAD 168 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC
Confidence 221111 000000111111000 000000 0 00 00 1235778898889889999999999999987633
Q ss_pred e-EE---E-EEcCCe--EEEcCeEEEccCCChHH
Q 009427 237 A-AV---L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 237 g-v~---v-~~~~G~--~i~a~lVV~AdG~~S~v 263 (535)
+ +. + ...+|+ .+.|+.||+|+|.++.+
T Consensus 169 g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 169 GRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred CeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 3 22 2 123453 58999999999998643
No 134
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.66 E-value=3.6e-07 Score=99.89 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=84.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHc--CCCChHhHHHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVES--GILVEDDIDEA 174 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~l--Gl~~~~~~~~~ 174 (535)
++|||||| |.||+++|+.+++ |.+|+||||....+.+..+. + +. ..++.+... |+.+++.++..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 58999999 9999999999986 99999999997654432211 1 11 122222222 23233222211
Q ss_pred Hhh------hcCCCccccccc--Cc-------ceeeecc-c--cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427 175 TAT------KFNPNRCGFEGK--GE-------IWVEDIL-N--LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN 236 (535)
Q Consensus 175 ~~~------~~~~~~~~~~~~--~~-------~~~~~~~-~--~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~ 236 (535)
+.. ......+.|... +. .+...+. . .......+.+.|.+++. .|+++++++.|+++..+++
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g 160 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENG 160 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecCC
Confidence 110 000001111100 00 0000000 0 01123457788887775 6899999999999976655
Q ss_pred eEE-EEE--cCCe--EEEcCeEEEccCCChH
Q 009427 237 AAV-LLL--AEGK--ILSSHLIIDAMGNFSP 262 (535)
Q Consensus 237 gv~-v~~--~~G~--~i~a~lVV~AdG~~S~ 262 (535)
.+. +.+ .+|+ .+.|+.||+|+|.++.
T Consensus 161 ~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 161 RCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred EEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 433 222 2342 6899999999999875
No 135
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.65 E-value=4.8e-07 Score=100.46 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE--cCCe-EEEcC-eEEEccCCCh
Q 009427 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK-ILSSH-LIIDAMGNFS 261 (535)
Q Consensus 206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~--~~G~-~i~a~-lVV~AdG~~S 261 (535)
.+.+.|.+++++.|++++.+++|+++..+++.++ |.+ .++. .+.++ .||.|+|.++
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 4666788888889999999999999987766433 223 2343 47785 7999999887
No 136
>PRK12839 hypothetical protein; Provisional
Probab=98.64 E-value=6.6e-07 Score=99.05 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe----EEEEEcCCe-EE-EcCeEEEccCCChH
Q 009427 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-IL-SSHLIIDAMGNFSP 262 (535)
Q Consensus 203 ~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g----v~v~~~~G~-~i-~a~lVV~AdG~~S~ 262 (535)
+...+...|.+.+.+.|++|+.++.|+++..++++ +++...+|. .+ .++.||+|+|.++.
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 45667888999999999999999999999765433 223333443 34 45899999999875
No 137
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.63 E-value=3.5e-07 Score=100.83 Aligned_cols=154 Identities=19% Similarity=0.295 Sum_probs=84.4
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHc--CCCChHhHH
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVES--GILVEDDID 172 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~l--Gl~~~~~~~ 172 (535)
+.++|||||| |.||+++|+.++ .|.+|+||||....+.+..+. + +. ..++.+... ++.+++.++
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 3479999999 999999999987 499999999987644332111 1 11 122222222 232332222
Q ss_pred HHHhh-----hc-CCCcccccccC--------cceeeecccccc--CHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeC
Q 009427 173 EATAT-----KF-NPNRCGFEGKG--------EIWVEDILNLGV--SPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYE 235 (535)
Q Consensus 173 ~~~~~-----~~-~~~~~~~~~~~--------~~~~~~~~~~~v--~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~ 235 (535)
..+.. .| ....+.|.... ..+...+....- .-..+...|.+.+.+. |+++++++.++++..++
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~ 165 (553)
T PRK07395 86 FLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEP 165 (553)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecC
Confidence 11110 00 00011111000 000000000000 1245778888888654 89999999999998763
Q ss_pred --CeEE-E-EEcCCe--EEEcCeEEEccCCChH
Q 009427 236 --NAAV-L-LLAEGK--ILSSHLIIDAMGNFSP 262 (535)
Q Consensus 236 --~gv~-v-~~~~G~--~i~a~lVV~AdG~~S~ 262 (535)
+.++ + ...+|. .+.|+.||.|+|.++.
T Consensus 166 ~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 166 ETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 2222 1 123453 4899999999998643
No 138
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=7.7e-07 Score=98.96 Aligned_cols=153 Identities=16% Similarity=0.237 Sum_probs=85.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc-------cHH----HHHHHHHcC--CCChHhHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI-------SRK----ELLELVESG--ILVEDDID 172 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i-------s~~----~l~~L~~lG--l~~~~~~~ 172 (535)
++|||||| |++|+++|+.+++. .+|+|+||....+....+ .+ ... ..+.....| +.+++.++
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~ 83 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE 83 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence 68999999 99999999999987 999999998654332111 00 001 111111112 33332222
Q ss_pred HHHh-----hhc-CCCcccccc--cCc-------ceee-------ecccccc--CHHHHHHHHHHHHHhCCCEEEeCceE
Q 009427 173 EATA-----TKF-NPNRCGFEG--KGE-------IWVE-------DILNLGV--SPAKLIEIVKKRFISLGGVIFEGYSV 228 (535)
Q Consensus 173 ~~~~-----~~~-~~~~~~~~~--~~~-------~~~~-------~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~V 228 (535)
..+. ..+ ..-.+.|.. .+. .+.. .+..+.. ....+.+.|.+.+.+.|+++++++.|
T Consensus 84 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~v 163 (583)
T PRK08205 84 IMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFYV 163 (583)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeCCEE
Confidence 1111 000 000111110 000 0000 0000111 23567888999898889999999999
Q ss_pred EEEEEeC----CeE---EE-EEcCCe--EEEcCeEEEccCCChHH
Q 009427 229 SSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 229 ~~i~~~~----~gv---~v-~~~~G~--~i~a~lVV~AdG~~S~v 263 (535)
+++..++ +.+ ++ ...+|+ .+.|+.||+|+|.++.+
T Consensus 164 ~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 164 LDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred EEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 9997654 322 22 223453 58999999999998754
No 139
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=6e-07 Score=99.85 Aligned_cols=154 Identities=13% Similarity=0.132 Sum_probs=84.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c-----------cH-HHHHHHHHcC--CCChHhH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I-----------SR-KELLELVESG--ILVEDDI 171 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i-----------s~-~~l~~L~~lG--l~~~~~~ 171 (535)
.+|||||| |+||+++|+.+++.|.+|+||||....+....+. + +. ..++.....| +.+++.+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 47999999 9999999999999999999999986544322111 0 11 1122222222 3232222
Q ss_pred HHHHhh-----hc-CCCcccccccC---------cceeeecccc--ccCHHHHHHHHHHHHHhCC----CEEEeCceEEE
Q 009427 172 DEATAT-----KF-NPNRCGFEGKG---------EIWVEDILNL--GVSPAKLIEIVKKRFISLG----GVIFEGYSVSS 230 (535)
Q Consensus 172 ~~~~~~-----~~-~~~~~~~~~~~---------~~~~~~~~~~--~v~~~~l~~~L~~~a~~~G----~~i~~~~~V~~ 230 (535)
+..+.. .+ ..-.+.|.... ..+...+..+ ......+...|.+.+.+.+ +++++++.+++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~ 162 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG 162 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence 211110 00 00011111000 0010011000 0123457777877776543 67999999999
Q ss_pred EEEeCCeEE----EEE-cCCe--EEEcCeEEEccCCChHH
Q 009427 231 ICTYENAAV----LLL-AEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 231 i~~~~~gv~----v~~-~~G~--~i~a~lVV~AdG~~S~v 263 (535)
+..++++.+ +.. .+++ .+.|+.||.|||.++.+
T Consensus 163 Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 163 AVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred EEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 987544322 221 1343 58999999999998754
No 140
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.62 E-value=3.6e-07 Score=99.09 Aligned_cols=37 Identities=32% Similarity=0.581 Sum_probs=34.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
.|||+||| ||+|+++|..|++.|++|+|||+..+++.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~ 41 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGT 41 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcc
Confidence 69999999 99999999999999999999999866553
No 141
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.62 E-value=3.1e-07 Score=99.32 Aligned_cols=37 Identities=46% Similarity=0.658 Sum_probs=34.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
+|||+||| ||+|+++|..|+++|++|+|+|+..+++.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~ 41 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGT 41 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccc
Confidence 69999999 99999999999999999999999876553
No 142
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.59 E-value=2.5e-06 Score=94.33 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCCe--EEEc-CeEEEccCCChHH
Q 009427 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPV 263 (535)
Q Consensus 206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~-~~G~--~i~a-~lVV~AdG~~S~v 263 (535)
.+...|.+.+++.|++++.+++|+++..+++.++ |.. .+|+ .+.+ +-||.|+|.++..
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 4556788888889999999999999986544332 112 2342 4666 5899999998754
No 143
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=4.4e-07 Score=98.35 Aligned_cols=37 Identities=38% Similarity=0.382 Sum_probs=33.1
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKG 145 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~ 145 (535)
.+||||||| ||+|+.+|..|++.|++|+|||+. .+++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG 41 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG 41 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 369999999 999999999999999999999986 3443
No 144
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.57 E-value=4e-07 Score=98.11 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=34.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
+|||+||| ||+|+.+|..|++.|++|+|+||+.+++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~ 39 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGT 39 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccc
Confidence 59999999 99999999999999999999999876553
No 145
>PRK10262 thioredoxin reductase; Provisional
Probab=98.57 E-value=9.5e-07 Score=90.79 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=73.7
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
..+||+||| ||+|+++|..|+++|++|+++|+...++... . .. . ...| |..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~----------------~-~~-~-----~~~~-~~~---- 56 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT----------------T-TT-E-----VENW-PGD---- 56 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCcee----------------c-Cc-e-----ECCC-CCC----
Confidence 368999999 9999999999999999999999654332100 0 00 0 0000 000
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
...++...+.+.+.+.+...+.++..+ +|++++..++.+.++.++ .++.+|.||.|+|...
T Consensus 57 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 57 -----------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALIIATGASA 117 (321)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecC-CEEEECEEEECCCCCC
Confidence 001233445566777777777777665 577777666666666533 3689999999999764
No 146
>PRK06370 mercuric reductase; Validated
Probab=98.57 E-value=8.3e-07 Score=96.02 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=34.7
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
.+||||||| ||+|+++|+.|++.|++|+|||+..+++.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~ 42 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGT 42 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCc
Confidence 369999999 99999999999999999999999876654
No 147
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.56 E-value=8.9e-07 Score=99.50 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe---EEEEE-cCCe--EEEcCeEEEccCCChHH
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g---v~v~~-~~G~--~i~a~lVV~AdG~~S~v 263 (535)
..+...|.+.+.+.|+++++++.++++..+++. +++.. .+|+ .+.|+.||.|+|.++.+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 346667888888899999999999999876654 33332 3553 57899999999988754
No 148
>PRK06116 glutathione reductase; Validated
Probab=98.56 E-value=6e-07 Score=96.78 Aligned_cols=36 Identities=39% Similarity=0.642 Sum_probs=33.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
+|||+||| ||+|+++|+.|+++|++|+|||+..+++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG 40 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG 40 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence 69999999 9999999999999999999999986554
No 149
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.56 E-value=9.3e-07 Score=98.17 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=33.7
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
.++|||||| |.+|+++|+.++++|.+|+||||....+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 369999999 9999999999999999999999986544
No 150
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.56 E-value=8.5e-07 Score=97.13 Aligned_cols=36 Identities=39% Similarity=0.481 Sum_probs=32.6
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
.++|||||| | +|+++|+.+++.|.+|+||||....+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 379999999 9 99999999999999999999986533
No 151
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.56 E-value=1.6e-06 Score=86.47 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=47.7
Q ss_pred cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---------CC-----------eEEEEEcCC--eEEEcCeEEEccCC
Q 009427 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---------EN-----------AAVLLLAEG--KILSSHLIIDAMGN 259 (535)
Q Consensus 202 v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---------~~-----------gv~v~~~~G--~~i~a~lVV~AdG~ 259 (535)
+|+-.|+..+++++...|+.+. +.+|++++.+ ++ +++|...|+ +.+++.++|.|.|+
T Consensus 240 fdpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa 318 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA 318 (509)
T ss_pred cCHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence 7899999999999999998876 4577777654 22 234444443 46899999999999
Q ss_pred ChHHHHH
Q 009427 260 FSPVVKQ 266 (535)
Q Consensus 260 ~S~v~~~ 266 (535)
||.-...
T Consensus 319 ~s~QvAr 325 (509)
T KOG2853|consen 319 WSGQVAR 325 (509)
T ss_pred cHHHHHH
Confidence 9965444
No 152
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.54 E-value=1e-06 Score=95.31 Aligned_cols=138 Identities=22% Similarity=0.251 Sum_probs=72.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCCCcccc-cccHHHHHHHHHcCCCChHhHHHHH-hhhcCCCccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKGREQEW-NISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG 185 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~~~~~~-~is~~~l~~L~~lGl~~~~~~~~~~-~~~~~~~~~~ 185 (535)
+|||+||| ||+|+.+|+.|++.|++|+||||+ .+++....+ .+....+.... ..+.... ...|. .
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~-------~~~~~~~~~~~~~----~ 73 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAV-------LRLIGFNQNPLYS----S 73 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHH-------HHHHHHhhhhhhc----c
Confidence 69999999 999999999999999999999996 454431111 12212111100 0000000 00110 0
Q ss_pred ccccCcceeeeccccc-cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe--EEEcCeEEEccCCCh
Q 009427 186 FEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 261 (535)
Q Consensus 186 ~~~~~~~~~~~~~~~~-v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~--~i~a~lVV~AdG~~S 261 (535)
+......-........ --...+.+.+.+.+.+.|++++.++ +..+ +.+.+.|...+|. ++++|.||+|+|...
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 74 YRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFV--DPHTVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 0000000000000000 0001123345555667789888764 3333 4556667666664 699999999999653
No 153
>PRK14694 putative mercuric reductase; Provisional
Probab=98.54 E-value=1e-06 Score=95.54 Aligned_cols=38 Identities=29% Similarity=0.500 Sum_probs=34.5
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
.+|||+||| ||+|+++|..|++.|++|+|||++.+++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGt 43 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGT 43 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccc
Confidence 379999999 99999999999999999999999866553
No 154
>PTZ00058 glutathione reductase; Provisional
Probab=98.54 E-value=6.2e-07 Score=98.76 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=34.6
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
.+||||||| |++|.++|..+++.|.+|+|||++.+++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGt 85 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGT 85 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccccccc
Confidence 369999999 99999999999999999999999866654
No 155
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.54 E-value=9e-07 Score=96.90 Aligned_cols=152 Identities=17% Similarity=0.220 Sum_probs=83.5
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC-CCcccc---cc--------cH-HHHHHHHHc--CCCChHhHH
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK-GREQEW---NI--------SR-KELLELVES--GILVEDDID 172 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~-~~~~~~---~i--------s~-~~l~~L~~l--Gl~~~~~~~ 172 (535)
.++|||||| |.+|+++|+.++ |.+|+||||...+ ++...+ .+ +. ..++.+... |+.+++.++
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v~ 85 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVAA 85 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 368999999 999999999997 5799999999762 222211 11 11 112222222 233332222
Q ss_pred HHHhh-----hc-CCCcccccc--cCcc-------eeeec-cc--cccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEE
Q 009427 173 EATAT-----KF-NPNRCGFEG--KGEI-------WVEDI-LN--LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICT 233 (535)
Q Consensus 173 ~~~~~-----~~-~~~~~~~~~--~~~~-------~~~~~-~~--~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~ 233 (535)
..+.. .| ....+.|.. .+.. +...+ .. ..-....+.+.|.+.+.+. |++++.++.|+++..
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~ 165 (513)
T PRK07512 86 LITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLV 165 (513)
T ss_pred HHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhheee
Confidence 11110 00 000111110 0000 00000 00 0012356788888888775 899999999999876
Q ss_pred eCCeEE-EEE-cCC--eEEEcCeEEEccCCChH
Q 009427 234 YENAAV-LLL-AEG--KILSSHLIIDAMGNFSP 262 (535)
Q Consensus 234 ~~~gv~-v~~-~~G--~~i~a~lVV~AdG~~S~ 262 (535)
+++.++ +.+ .++ ..+.|+.||.|+|.++.
T Consensus 166 ~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 166 DDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred cCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 555332 222 223 26899999999999764
No 156
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.54 E-value=2.2e-06 Score=94.83 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCC--eEEEcC-eEEEccCCChH
Q 009427 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEG--KILSSH-LIIDAMGNFSP 262 (535)
Q Consensus 206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~-~~G--~~i~a~-lVV~AdG~~S~ 262 (535)
.+...|.+.+++.|++++.+++|+++..+++.++ |.. .++ ..+.|+ -||.|+|.+..
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 3556677777888999999999999987655443 222 234 358896 69999998764
No 157
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.52 E-value=1.1e-06 Score=97.87 Aligned_cols=30 Identities=33% Similarity=0.395 Sum_probs=28.9
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
||||| |++|++||+.+++.|.+|+||||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 79999 9999999999999999999999986
No 158
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.50 E-value=1.4e-06 Score=96.71 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCCe--EEEc-CeEEEccCCChH
Q 009427 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSP 262 (535)
Q Consensus 204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~-~~G~--~i~a-~lVV~AdG~~S~ 262 (535)
...+...|.+++++.|++++.+++|+++..+++.++ |.+ .+|+ ++.| +.||.|+|.++.
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 345778899999999999999999999976655433 222 2343 5776 789999999875
No 159
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.49 E-value=4.1e-07 Score=88.28 Aligned_cols=127 Identities=21% Similarity=0.372 Sum_probs=76.4
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC-CCCCccc--------------cc----ccHHHHHHHHHcCCCChHhH
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT-LKGREQE--------------WN----ISRKELLELVESGILVEDDI 171 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~-~~~~~~~--------------~~----is~~~l~~L~~lGl~~~~~~ 171 (535)
+|+||| |++|+++|+.|+..|++|+|+||.. ++++-.. .+ .-.+.++.+.+.|+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV----- 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLV----- 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCce-----
Confidence 699999 9999999999999999999999983 2221100 00 001223333333332
Q ss_pred HHHHhhhcCCCcccccccC------c-ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC
Q 009427 172 DEATATKFNPNRCGFEGKG------E-IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE 244 (535)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~ 244 (535)
..|.+..-.+...+ + .|+-.. + ...|.+ +.....+|..+++|+.+...++.+++++++
T Consensus 78 -----~~W~~~~~~~~~~~~~~~~d~~pyvg~p---g------msalak-~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~ 142 (331)
T COG3380 78 -----DVWTPAVWTFTGDGSPPRGDEDPYVGEP---G------MSALAK-FLATDLTVVLETRVTEVARTDNDWTLHTDD 142 (331)
T ss_pred -----eeccccccccccCCCCCCCCCCccccCc---c------hHHHHH-HHhccchhhhhhhhhhheecCCeeEEEecC
Confidence 22222211121110 0 021111 0 122333 444567888999999999999999999976
Q ss_pred C-eEEEcCeEEEccC
Q 009427 245 G-KILSSHLIIDAMG 258 (535)
Q Consensus 245 G-~~i~a~lVV~AdG 258 (535)
| +...+|.||+|-=
T Consensus 143 g~~~~~~d~vvla~P 157 (331)
T COG3380 143 GTRHTQFDDVVLAIP 157 (331)
T ss_pred CCcccccceEEEecC
Confidence 6 5678999998854
No 160
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.48 E-value=3.1e-06 Score=93.21 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=85.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHc--CCCChHhHHHH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVES--GILVEDDIDEA 174 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~l--Gl~~~~~~~~~ 174 (535)
++|||||| |.+|+++|+.+++. .+|+||||....++...+. + +. ..++..... |+.+++.++..
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 86 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRFI 86 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHHH
Confidence 68999999 99999999999987 8999999987544332211 1 11 122222222 33333322221
Q ss_pred Hhh-----hc-CCCcccccccC------c-------ceeeeccccc--cCHHHHHHHHHHHHHhC-CCEEEeCceEEEEE
Q 009427 175 TAT-----KF-NPNRCGFEGKG------E-------IWVEDILNLG--VSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC 232 (535)
Q Consensus 175 ~~~-----~~-~~~~~~~~~~~------~-------~~~~~~~~~~--v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~ 232 (535)
+.. .| ....+.|.... . .+...+.-.. -.-..+...|.+++.+. ++++++++.++++.
T Consensus 87 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li 166 (536)
T PRK09077 87 AENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLI 166 (536)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeee
Confidence 110 00 00011111000 0 0000000000 01245677788888765 79999999999987
Q ss_pred EeC------CeEE-EEE---cCCe--EEEcCeEEEccCCChHHH
Q 009427 233 TYE------NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 233 ~~~------~gv~-v~~---~~G~--~i~a~lVV~AdG~~S~v~ 264 (535)
.++ +.++ +.. .+|+ .+.|+.||+|+|.++.+.
T Consensus 167 ~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~ 210 (536)
T PRK09077 167 TSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVY 210 (536)
T ss_pred ecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCC
Confidence 653 3332 222 2343 589999999999987543
No 161
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.47 E-value=2.4e-06 Score=94.38 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=32.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
++|||||| |.+|+++|+.+++.|.+|+||||..
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 69999999 9999999999999999999999987
No 162
>PRK09897 hypothetical protein; Provisional
Probab=98.46 E-value=2.5e-06 Score=93.19 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=78.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCccccccc--HHHHH-HHHHcCCC-ChHhHHHHHhh----hc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNIS--RKELL-ELVESGIL-VEDDIDEATAT----KF 179 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is--~~~l~-~L~~lGl~-~~~~~~~~~~~----~~ 179 (535)
.+|+||| |++|+++|..|++.+ ++|+|+|+....+....|... .+.+. ......+. ....+..-... .+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 4799999 999999999999875 589999996433322222210 01100 00000000 00111100000 00
Q ss_pred CCCcccccc-cCcceeeeccccccCHHHHHHHHHHHHHhCC--CEEEeCceEEEEEEeCCeEEEEEcC-CeEEEcCeEEE
Q 009427 180 NPNRCGFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIID 255 (535)
Q Consensus 180 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G--~~i~~~~~V~~i~~~~~gv~v~~~~-G~~i~a~lVV~ 255 (535)
......... ....|.+ +..++---....+.+.+.+.+.| +.++.+++|+++..+++++.+.+.+ |..+.||.||.
T Consensus 82 ~~~g~~~~~l~~~~f~P-R~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 82 QRYGVKKETLHDRQFLP-RILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HhcCCcceeecCCccCC-eecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 000000000 0111211 11111111233344556666666 6788899999998888888888755 46799999999
Q ss_pred ccCCC
Q 009427 256 AMGNF 260 (535)
Q Consensus 256 AdG~~ 260 (535)
|+|+.
T Consensus 161 AtGh~ 165 (534)
T PRK09897 161 ATGHV 165 (534)
T ss_pred CCCCC
Confidence 99974
No 163
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.45 E-value=5e-06 Score=91.98 Aligned_cols=58 Identities=16% Similarity=0.311 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCC--eEEEcC-eEEEccCCChH
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEG--KILSSH-LIIDAMGNFSP 262 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~-~~G--~~i~a~-lVV~AdG~~S~ 262 (535)
..+...|.+++++.|++++.+++|+++..+++.++ |.. .+| .++.|+ -||+|+|.++.
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 34667788889899999999999999987665432 222 244 357885 79999998875
No 164
>PLN02507 glutathione reductase
Probab=98.45 E-value=2.9e-06 Score=92.56 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=30.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVER 140 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr 140 (535)
+||||||| ||+|+.+|..+++.|.+|+|||+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 69999999 99999999999999999999997
No 165
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.45 E-value=3.7e-06 Score=90.88 Aligned_cols=36 Identities=42% Similarity=0.639 Sum_probs=33.1
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
||||||| |++|+++|..|++.|.+|+|||++.+++.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~ 38 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGT 38 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 8999999 99999999999999999999999666553
No 166
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=1.6e-06 Score=92.33 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=85.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccH-------HHHHHHHHcCCCChHhHHHHHhhhcCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISR-------KELLELVESGILVEDDIDEATATKFNP 181 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~-------~~l~~L~~lGl~~~~~~~~~~~~~~~~ 181 (535)
.-+|+||| |++||++|..|.+.|++|+++||...-++ .|.... .-++.| .+.+ ..+ + ..|.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG--lW~y~~~~~~~~ss~Y~~l-~tn~--pKe---~--~~~~- 74 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG--LWKYTENVEVVHSSVYKSL-RTNL--PKE---M--MGYS- 74 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc--eEeecCcccccccchhhhh-hccC--Chh---h--hcCC-
Confidence 36899999 99999999999999999999999854332 333210 001111 0011 000 0 0111
Q ss_pred CcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC-CeEEEEEcCC----eEEEcCeEE
Q 009427 182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLII 254 (535)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~-~gv~v~~~~G----~~i~a~lVV 254 (535)
...| ..+...+-.+...+++.|..-|...+. .|.++++|..+.... +.+.|.+.++ .+.-+|.||
T Consensus 75 -dfpf-------~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~Vv 146 (448)
T KOG1399|consen 75 -DFPF-------PERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVV 146 (448)
T ss_pred -CCCC-------cccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEE
Confidence 0111 111112223556888899988888765 688899888887777 5788877543 467899999
Q ss_pred EccCCCh
Q 009427 255 DAMGNFS 261 (535)
Q Consensus 255 ~AdG~~S 261 (535)
+|+|++.
T Consensus 147 VctGh~~ 153 (448)
T KOG1399|consen 147 VCTGHYV 153 (448)
T ss_pred EcccCcC
Confidence 9999984
No 167
>PLN02546 glutathione reductase
Probab=98.43 E-value=3.6e-06 Score=92.76 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=30.6
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVER 140 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr 140 (535)
.+|||+||| ||+|..+|..++++|.+|+|||+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 369999999 99999999999999999999996
No 168
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.41 E-value=1.3e-06 Score=94.62 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=33.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
||||||| ||+|+++|..|+++|++|+|||++.+++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence 7999999 99999999999999999999999876554
No 169
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.40 E-value=1e-05 Score=84.91 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=56.7
Q ss_pred ccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe-EEEEEcC---C--eEEEcCeEEEccCCChHHHHH
Q 009427 199 NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE---G--KILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~g-v~v~~~~---G--~~i~a~lVV~AdG~~S~v~~~ 266 (535)
+..||-..|.+.|.+.+.+. |++++.+++|++|.+.+|+ +.|++.+ | .+++|++|++..|.+|-...|
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLq 249 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQ 249 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHH
Confidence 34578889999999998887 8999999999999998877 8887642 2 579999999999988866655
No 170
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.40 E-value=2.6e-06 Score=92.24 Aligned_cols=36 Identities=42% Similarity=0.587 Sum_probs=32.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcc-cCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVER-NTLKG 145 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr-~~~~~ 145 (535)
+|||+||| ||+|+++|..++++|++|+|||+ ..+++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG 40 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG 40 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee
Confidence 59999999 99999999999999999999997 44554
No 171
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.40 E-value=2.9e-06 Score=92.13 Aligned_cols=31 Identities=42% Similarity=0.593 Sum_probs=30.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVER 140 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr 140 (535)
+|||+||| ||+|+++|+.+++.|.+|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 69999999 99999999999999999999998
No 172
>PRK13748 putative mercuric reductase; Provisional
Probab=98.39 E-value=3.3e-06 Score=93.66 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=34.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
+||||||| ||+|+++|..|++.|.+|+|||++.+++.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~ 135 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT 135 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence 69999999 99999999999999999999999866543
No 173
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.38 E-value=9.2e-06 Score=97.01 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=34.6
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
..++|||||| |.+|++||+.+++.|.+|+||||....++
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 4469999999 99999999999999999999999865443
No 174
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=4e-06 Score=90.16 Aligned_cols=33 Identities=30% Similarity=0.624 Sum_probs=31.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
+||||||| ||+|+++|+.|+++|++|+|||+..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 59999999 9999999999999999999999973
No 175
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=6.3e-06 Score=88.54 Aligned_cols=33 Identities=42% Similarity=0.670 Sum_probs=31.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
+|||+||| ||+|+++|..|++.|++|+||||..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 59999999 9999999999999999999999974
No 176
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.37 E-value=1.4e-05 Score=88.98 Aligned_cols=151 Identities=20% Similarity=0.177 Sum_probs=79.4
Q ss_pred cEEEEc-chHHHHHHHHHH----HCCCcEEEEcccCCCCCccc--c--ccc-----------HH-HHHHHHH--cCCCCh
Q 009427 112 DVIVCG-GTLGIFIATALS----FKGLRVAIVERNTLKGREQE--W--NIS-----------RK-ELLELVE--SGILVE 168 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LA----r~G~~V~liEr~~~~~~~~~--~--~is-----------~~-~l~~L~~--lGl~~~ 168 (535)
|||||| |.||++||+.++ +.|.+|+||||....+.... + .+. .. .++.... .|+.++
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~ 80 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVRE 80 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcH
Confidence 899999 999999999998 77999999999865432210 0 110 11 1111111 123222
Q ss_pred HhHHHHHhh-----hc-CCCcccccc---cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC---C
Q 009427 169 DDIDEATAT-----KF-NPNRCGFEG---KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---N 236 (535)
Q Consensus 169 ~~~~~~~~~-----~~-~~~~~~~~~---~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~---~ 236 (535)
+.++..+.. .+ ..-.+.|.. .+...........+....+.+.+...+.+.++++++++.++++..++ +
T Consensus 81 ~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G 160 (614)
T TIGR02061 81 DLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN 160 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC
Confidence 222211110 00 000111210 01000000000001123444555555666678999999999998754 2
Q ss_pred e---EEE-EEcCCe--EEEcCeEEEccCCChH
Q 009427 237 A---AVL-LLAEGK--ILSSHLIIDAMGNFSP 262 (535)
Q Consensus 237 g---v~v-~~~~G~--~i~a~lVV~AdG~~S~ 262 (535)
. +++ ...+|+ .+.|+.||.|+|.++.
T Consensus 161 rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 161 RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred eEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 2 222 223453 5899999999999864
No 177
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.36 E-value=1.9e-05 Score=83.30 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=89.4
Q ss_pred cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCC--eEEEcCeEEEccCCC-hHHHHHhCCCCCCCCCc
Q 009427 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SPVVKQAFPAGSGPLDR 277 (535)
Q Consensus 202 v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G--~~i~a~lVV~AdG~~-S~v~~~~~p~~~~~~~~ 277 (535)
+-..+|.+.|.+.+++.|++++.+++|+++..++++++ +.+.++ .+++||.||.|+|+| |.-....+....
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~----- 334 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIY----- 334 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCcee-----
Confidence 33567889999999999999999999999988777666 444454 479999999999999 764433222211
Q ss_pred eeEEEEEecCCCCCCChHHHH-HHHhhhccCccCCCCCccchhcchhccccCCCCCCCCc--cCCCeeEeecCCCccccc
Q 009427 278 TTYMFTYIDPQAGSPKLEELL-ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA--AFNRILQFGDASGIQSPV 354 (535)
Q Consensus 278 ~~~~~~y~~~~~~~~~l~~~~-~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~~--~~~rvlliGDAA~~~~P~ 354 (535)
.-.|.- ++. ..++-..++ ..||.-.|- .+ +|+.......|... ..+++.++|-.-+-.+|+
T Consensus 335 -Epif~L-~v~-~~~~r~~W~~~~ff~~~p~-----------~~--~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~ 398 (419)
T TIGR03378 335 -EPIFGL-DVL-QLPDRDQWYQHRFFAPHPF-----------MQ--FGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPI 398 (419)
T ss_pred -eeccCC-CcC-CCcchhhhcchhhcCCChh-----------hh--cCceEccccCccCCCcccccceEechhhcCCChH
Confidence 111111 110 111111111 122221111 00 12211111112111 158999999988777774
Q ss_pred -ccccchHHHHHHHHHHHHH
Q 009427 355 -SFGGFGSLTRHLGRLSTGV 373 (535)
Q Consensus 355 -~G~Gi~~al~da~~La~~l 373 (535)
-|+|-+.++..+..+++.|
T Consensus 399 ~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 399 FEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred hcCCCchhHHHHHHHHHHhh
Confidence 5788888888888777754
No 178
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.34 E-value=2e-06 Score=92.31 Aligned_cols=131 Identities=23% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 185 (535)
.+.+||+||| |++|+++|++|.++|.. ++|+||+.-.++ .|+..+ .+.+ -+-+.... ..|. ...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg--~W~~~r--y~~l---~~~~p~~~-----~~~~--~~p 71 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG--TWRYNR--YPGL---RLDSPKWL-----LGFP--FLP 71 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC--cchhcc--CCce---EECCchhe-----eccC--CCc
Confidence 3479999999 99999999999999999 999999853222 232110 0000 00000000 0010 000
Q ss_pred ccccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC--CeEEEEEcCCeE--EEcCeEEEccCC
Q 009427 186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKI--LSSHLIIDAMGN 259 (535)
Q Consensus 186 ~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~--~gv~v~~~~G~~--i~a~lVV~AdG~ 259 (535)
|. +...... ...+...+.+.+.+.+. .+..++.|+.+..++ +.++|++++|.+ +.||.||.|+|.
T Consensus 72 ~~-----~~~~~~~----~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 72 FR-----WDEAFAP----FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred cC-----CcccCCC----cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 00 0000000 11144556666666664 455566666655444 478898877644 569999999998
Q ss_pred Ch
Q 009427 260 FS 261 (535)
Q Consensus 260 ~S 261 (535)
++
T Consensus 143 ~~ 144 (443)
T COG2072 143 LS 144 (443)
T ss_pred CC
Confidence 66
No 179
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.33 E-value=1.2e-05 Score=87.19 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=73.7
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc-ccHHHHHHHHHcCCCChHhHHHHHhhhcC--C---Ccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFN--P---NRC 184 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~-is~~~l~~L~~lGl~~~~~~~~~~~~~~~--~---~~~ 184 (535)
|||||| |++|+.+|..++++|.+|+|||+..+++..-.+. +....+-.-. .+ ...+.. ...+. . ...
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a--~~--~~~~~~--~~~~g~~~~~~~~~ 76 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATA--EV--RTELRR--AAELGIRFIDDGEA 76 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHH--HH--HHHHHH--HHhCCcccccCccc
Confidence 799999 9999999999999999999999987655421111 1111110000 00 000000 00110 0 000
Q ss_pred cccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEE--EeCCeEEEEEcCCe--EEEcCeEEEccCCC
Q 009427 185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGNF 260 (535)
Q Consensus 185 ~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~--~~~~gv~v~~~~G~--~i~a~lVV~AdG~~ 260 (535)
.+... .......-. ...+.+.+.+.+.+.|++++.++ ++.+. .+++.+.|...+|+ ++.+|.||+|+|..
T Consensus 77 ~~~~~---~~~~~~~~~--~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 77 RVDLP---AVNARVKAL--AAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGAS 150 (466)
T ss_pred ccCHH---HHHHHHHHH--HHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCC
Confidence 00000 000000000 01122345566667899998764 33332 34566777776664 79999999999975
Q ss_pred h
Q 009427 261 S 261 (535)
Q Consensus 261 S 261 (535)
.
T Consensus 151 p 151 (466)
T PRK07845 151 P 151 (466)
T ss_pred C
Confidence 4
No 180
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.33 E-value=9.1e-06 Score=87.17 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEE--EEEc-CCeEEEcCeEEEccCCChH
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV--LLLA-EGKILSSHLIIDAMGNFSP 262 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv~--v~~~-~G~~i~a~lVV~AdG~~S~ 262 (535)
..+.+.|.+.+++.|++++.+++|+++..++ ++.+ +... ++.++.|+.||+|+|.++.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 4678889999999999999999999998763 3333 2332 3357999999999998764
No 181
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=1e-06 Score=93.19 Aligned_cols=137 Identities=19% Similarity=0.208 Sum_probs=83.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC--CCC---Cccccccc----HHHHHHHHHcCCCChHhHHHHHhhhc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT--LKG---REQEWNIS----RKELLELVESGILVEDDIDEATATKF 179 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~--~~~---~~~~~~is----~~~l~~L~~lGl~~~~~~~~~~~~~~ 179 (535)
.||||||| |-||+-||++.||.|.+++|+--+. ++. ++..+++. .+|++.| |-.-....+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDAL---GG~Mg~~~D~------ 74 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDAL---GGLMGKAADK------ 74 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhc---cchHHHhhhh------
Confidence 59999999 9999999999999999999986653 211 11111111 1234443 3211111111
Q ss_pred CCCccccc--c--cCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCe
Q 009427 180 NPNRCGFE--G--KGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA--AVLLLAEGKILSSHL 252 (535)
Q Consensus 180 ~~~~~~~~--~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~l 252 (535)
..+.|. . +++. .......+|...+.+.+.+.+.... ..++ ...|+++..+++. +-|.+.+|..+.|+.
T Consensus 75 --~~IQ~r~LN~sKGPA--Vra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~a 149 (621)
T COG0445 75 --AGIQFRMLNSSKGPA--VRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKA 149 (621)
T ss_pred --cCCchhhccCCCcch--hcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCE
Confidence 011110 0 1111 1112344677777788888887664 4555 5578888776653 346677899999999
Q ss_pred EEEccCCC
Q 009427 253 IIDAMGNF 260 (535)
Q Consensus 253 VV~AdG~~ 260 (535)
||.++|.+
T Consensus 150 VVlTTGTF 157 (621)
T COG0445 150 VVLTTGTF 157 (621)
T ss_pred EEEeeccc
Confidence 99999976
No 182
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.30 E-value=5.6e-06 Score=89.65 Aligned_cols=37 Identities=35% Similarity=0.529 Sum_probs=34.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
+|||+||| ||+|+++|..|++.|.+|+|||++.+++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~ 41 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGV 41 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 59999999 99999999999999999999999866654
No 183
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.29 E-value=6.5e-06 Score=86.56 Aligned_cols=154 Identities=16% Similarity=0.261 Sum_probs=90.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----------cHHHHHHHHH-cCCCChHhHHHHHh
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----------SRKELLELVE-SGILVEDDIDEATA 176 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----------s~~~l~~L~~-lGl~~~~~~~~~~~ 176 (535)
||+||| |+|||++|+.|++. ++|+||-|.+....+..|. | ..+..+.|.. .|+.+++.++..+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999 99999999999998 9999999997765444332 1 1122223321 24555443332221
Q ss_pred hh-----c-CCCcccccccCc---------ceeeec-ccc-ccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCC--
Q 009427 177 TK-----F-NPNRCGFEGKGE---------IWVEDI-LNL-GVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN-- 236 (535)
Q Consensus 177 ~~-----~-~~~~~~~~~~~~---------~~~~~~-~~~-~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~-- 236 (535)
.. + -...+.|..+.+ .+...+ +.. .---..+.+.|.+++.+ .++++++++.+.++..+++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 00 0 000111211110 111100 000 01124677888888876 4889999999999988777
Q ss_pred --eEEEEEcCC--eEEEcCeEEEccCCChHHHHH
Q 009427 237 --AAVLLLAEG--KILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 237 --gv~v~~~~G--~~i~a~lVV~AdG~~S~v~~~ 266 (535)
|+.+...++ ..+.|+.||.|+|..+.+-..
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~ 201 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY 201 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence 333332323 578999999999988766443
No 184
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.27 E-value=2.4e-05 Score=91.27 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=32.8
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
.++|||||| |.+|+++|+.+++.|.+|+||||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 368999999 99999999999999999999999865
No 185
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.25 E-value=5.9e-06 Score=87.03 Aligned_cols=113 Identities=19% Similarity=0.091 Sum_probs=65.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc---------ccccccHHHHHHHHHcCCCChHhHHHHHhhhcC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~---------~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~ 180 (535)
-||+||| |++|+.+|+.||++|++|+|+|+.+..... ...+.+......+...|++. ++++..-...+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~-~em~~lgsl~~~ 81 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLK-EEMRRLGSLIME 81 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchH-HHHHHhcchhee
Confidence 4899999 999999999999999999999987543211 11122333333334446543 222211001111
Q ss_pred CCcccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEE
Q 009427 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC 232 (535)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~ 232 (535)
.. .....+......+|+..+.+.|.+++.+. +++++ ..+|+++.
T Consensus 82 aa-------d~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 82 AA-------DAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred cc-------cccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 10 00000111123578888999999998776 56776 56787773
No 186
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.25 E-value=1.5e-05 Score=80.68 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=29.3
Q ss_pred ccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT 142 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~ 142 (535)
||+|||| |++|+.+|..|++.| .+|+|||++.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 7999999 999999999999997 7999999983
No 187
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.24 E-value=7e-06 Score=75.35 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCCEEE-eCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 218 LGGVIF-EGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 218 ~G~~i~-~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
.|+++. ...+|+++...+++..+.+.+|..+.+|.||.|+|+
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 355433 467999999988998888889999999999999995
No 188
>PRK07233 hypothetical protein; Provisional
Probab=98.23 E-value=2.5e-05 Score=83.32 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.|.+.+.+.|++|+.+++|++|+.+++++++...++++++||.||.|....
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 35778888888888999999999999988777766555567789999999999853
No 189
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.22 E-value=1.6e-05 Score=85.95 Aligned_cols=36 Identities=39% Similarity=0.632 Sum_probs=33.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
+||||||| ||+|+++|..|++.|.+|+|||++.+++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG 39 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG 39 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence 59999999 9999999999999999999999975554
No 190
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.22 E-value=5.2e-06 Score=91.17 Aligned_cols=151 Identities=21% Similarity=0.318 Sum_probs=84.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc-------c---------cHH-HHHHHHHc--CCCChH
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------I---------SRK-ELLELVES--GILVED 169 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~-------i---------s~~-~l~~L~~l--Gl~~~~ 169 (535)
++|||||| |.||+.+|+.+++.|.+|+|+||....+++..+. + +.. .+...... ++-+++
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd 85 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQD 85 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCHH
Confidence 69999999 9999999999999999999999986554332110 0 111 11111111 122333
Q ss_pred hHHHHHh---------hhcCCCcccccccCcce-------eeeccccc--cCHHHHHHHHHHHHHh-CCCEEEeCceEEE
Q 009427 170 DIDEATA---------TKFNPNRCGFEGKGEIW-------VEDILNLG--VSPAKLIEIVKKRFIS-LGGVIFEGYSVSS 230 (535)
Q Consensus 170 ~~~~~~~---------~~~~~~~~~~~~~~~~~-------~~~~~~~~--v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~ 230 (535)
.++.... ..|........ .+.++ ...+..+. ---..++..|.+++.+ .+.+++.+..+++
T Consensus 86 ~i~~~~~~ap~~v~~Le~~G~~f~r~~-~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~ 164 (562)
T COG1053 86 AVEAFADEAPEAVDELEKWGVPFSRTE-DGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLD 164 (562)
T ss_pred HHHHHHHhhHHHHHHHHHhCCCcccCC-CccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhh
Confidence 2222111 11110000000 01000 00000111 1124577888888887 4568899999999
Q ss_pred EEEeCCe-EE----EEEcCC--eEEEcCeEEEccCCCh
Q 009427 231 ICTYENA-AV----LLLAEG--KILSSHLIIDAMGNFS 261 (535)
Q Consensus 231 i~~~~~g-v~----v~~~~G--~~i~a~lVV~AdG~~S 261 (535)
+..++++ +. ....+| ..++++.||.|+|...
T Consensus 165 l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 165 LLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred heecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 9876554 22 223445 3578999999999876
No 191
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.21 E-value=2.8e-06 Score=92.79 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=30.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
+|||+||| ||+|+++|..|+++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 59999999 999999999999999999999973
No 192
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.21 E-value=5.4e-06 Score=90.80 Aligned_cols=130 Identities=23% Similarity=0.286 Sum_probs=79.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCC------C-c
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP------N-R 183 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~------~-~ 183 (535)
.|+||| |++||++|..|.+.|++|+++||..--|+ .|...... +.|. ...|.. . .
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG--~W~~~~~~-----~~g~----------~~~y~sl~~n~sk~~ 65 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG--LWRYTENP-----EDGR----------SSVYDSLHTNTSKEM 65 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG--GGCHSTTC-----CCSE----------GGGSTT-B-SS-GGG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc--cCeeCCcC-----CCCc----------cccccceEEeeCchH
Confidence 599999 99999999999999999999999854332 33211000 0000 011110 0 1
Q ss_pred ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC-----eEEEEEcC-Ce--EEEcCeE
Q 009427 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GK--ILSSHLI 253 (535)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~~-----gv~v~~~~-G~--~i~a~lV 253 (535)
..|.+ -.+..+...+ .+...+.+.|..-|...+. .|.++|+|++++..++ .+.|++.+ |+ +-..|.|
T Consensus 66 ~~fsd--fp~p~~~p~f-~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V 142 (531)
T PF00743_consen 66 MAFSD--FPFPEDYPDF-PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAV 142 (531)
T ss_dssp SCCTT--S-HCCCCSSS-EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred hcCCC--cCCCCCCCCC-CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence 11111 0000111112 3567888899998988775 6889999999987653 57787753 42 3567999
Q ss_pred EEccCCCh
Q 009427 254 IDAMGNFS 261 (535)
Q Consensus 254 V~AdG~~S 261 (535)
|+|+|.++
T Consensus 143 vvatG~~~ 150 (531)
T PF00743_consen 143 VVATGHFS 150 (531)
T ss_dssp EEEE-SSS
T ss_pred EEcCCCcC
Confidence 99999986
No 193
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.19 E-value=2.4e-05 Score=63.24 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=60.5
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccCc
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
|+||| |+.|+-+|..|++.|.+|+|+|+.+.... .+ +
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-----------------~~-~------------------------ 39 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-----------------GF-D------------------------ 39 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-----------------TS-S------------------------
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-----------------hc-C------------------------
Confidence 89999 99999999999999999999998832110 00 0
Q ss_pred ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC
Q 009427 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG 245 (535)
Q Consensus 192 ~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G 245 (535)
..+...+.+.+++.|+++++++.+++++.+++++.|+++||
T Consensus 40 -------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 40 -------------PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp -------------HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred -------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 11124456667778999999999999999888877777775
No 194
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.3e-06 Score=85.65 Aligned_cols=109 Identities=25% Similarity=0.306 Sum_probs=75.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEE-cccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIV-ERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~li-Er~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
.|||+||| ||+|.++|++.||+|+|.-|+ ||. ++. -++.+ ++ +..+...+.
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf--GGQ---------vldT~---~I------ENfIsv~~t------- 263 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF--GGQ---------VLDTM---GI------ENFISVPET------- 263 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh--CCe---------ecccc---ch------hheeccccc-------
Confidence 59999999 999999999999999998776 543 221 12222 22 222221111
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
+-.+|...|.+..++..+.+..-.++++++.. ++-+.|++++|-.++++-||.|+|+.
T Consensus 264 ---------------eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 264 ---------------EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred ---------------cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 12345567777777778877776677776543 34577888899999999999999974
No 195
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.18 E-value=1.4e-05 Score=87.00 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=30.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
+||||||| ||+|+.+|+.+++.|.+|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 59999999 999999999999999999999974
No 196
>PRK14727 putative mercuric reductase; Provisional
Probab=98.18 E-value=1.8e-05 Score=86.10 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=33.3
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKG 145 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~ 145 (535)
.+||||||| |++|+++|..|++.|.+|+|||++ .+++
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG 53 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG 53 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence 369999999 999999999999999999999997 4544
No 197
>PRK07846 mycothione reductase; Reviewed
Probab=98.18 E-value=6e-06 Score=89.02 Aligned_cols=35 Identities=34% Similarity=0.645 Sum_probs=29.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
+||||||| ||+|..+|.. ..|.+|+|||++.+++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGt 36 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGT 36 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCc
Confidence 38999999 9999988865 46999999999877654
No 198
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.16 E-value=1.8e-05 Score=85.98 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=30.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHC-CCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~ 141 (535)
+||||||| ||+|..+|..+++. |.+|+|||++
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 69999999 99999999999997 9999999984
No 199
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.16 E-value=2.4e-05 Score=83.69 Aligned_cols=37 Identities=41% Similarity=0.661 Sum_probs=34.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~~ 146 (535)
+||+|||| ||+|..+|..+++.|.+|+|+|+. .+++.
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGt 42 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT 42 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCce
Confidence 69999999 999999999999999999999999 56554
No 200
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.14 E-value=2.1e-05 Score=82.82 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=57.1
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~ 264 (535)
+..+|+..++..|.+.+.+ |++++++++|++++.+++++.|++.+|..++|+.||+|+|.++...
T Consensus 129 ~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 129 GGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQL 193 (381)
T ss_pred CcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccc
Confidence 4568999999999999988 9999999999999887778888887777799999999999998543
No 201
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.13 E-value=1.2e-05 Score=79.78 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=51.9
Q ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-----EEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-----AVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-----v~v~~~~G~~i~a~lVV~AdG~~S~v~~~ 266 (535)
..+|-..+...+.+.+...|+.+..+-++.++..+.+. ++|....+++++++.||-|+|-.|.-...
T Consensus 191 GIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa 262 (453)
T KOG2665|consen 191 GIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAA 262 (453)
T ss_pred ceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHH
Confidence 34677788888999999999999999999999776653 33333336789999999999987755443
No 202
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.13 E-value=2.4e-05 Score=92.08 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=68.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
.+||+||| ||+|+++|+.|++.|++|+|+|+....++ +.+ . .....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG-~~~----------------~------------~~~~~---- 209 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG-SLL----------------S------------EAETI---- 209 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC-eee----------------c------------ccccc----
Confidence 58999999 99999999999999999999998743322 000 0 00000
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeE-EEE-E--------c----CC-eEEEcCe
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA-VLL-L--------A----EG-KILSSHL 252 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv-~v~-~--------~----~G-~~i~a~l 252 (535)
. +.+...+...+.+++.+. +++++.+++|.++..+ +.+ .+. . . +. .++.++.
T Consensus 210 ~-----------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~ 277 (985)
T TIGR01372 210 D-----------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDH-NTVGALERVTDHLDAPPKGVPRERLWRIRAKR 277 (985)
T ss_pred C-----------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecC-CeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence 0 012233445566666666 4889999999887421 111 111 0 0 11 2689999
Q ss_pred EEEccCCCh
Q 009427 253 IIDAMGNFS 261 (535)
Q Consensus 253 VV~AdG~~S 261 (535)
||+|+|+..
T Consensus 278 VILATGa~~ 286 (985)
T TIGR01372 278 VVLATGAHE 286 (985)
T ss_pred EEEcCCCCC
Confidence 999999754
No 203
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.11 E-value=9.5e-06 Score=76.97 Aligned_cols=113 Identities=22% Similarity=0.264 Sum_probs=66.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
|||||| |++|+++|..|++.|++|+|+|+....... ...+. ..+ ..+.. ....
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~~~----~~~---------~~~~~--~~~~---------- 54 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGCIP----SPL---------LVEIA--PHRH---------- 54 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSHHH----HHH---------HHHHH--HHHH----------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-ccccc----ccc---------ccccc--cccc----------
Confidence 799999 999999999999999999999876211000 00000 000 00000 0000
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-----EEE---EcCCeEEEcCeEEEccCCCh
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-----VLL---LAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-----~v~---~~~G~~i~a~lVV~AdG~~S 261 (535)
. .. ..++. .+.+.+...+++++.++++.++......+ .+. ..++.++.+|.||+|+|..+
T Consensus 55 -----~---~~--~~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 55 -----E---FL--PARLF-KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp -----H---HH--HHHHG-HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred -----c---cc--ccccc-ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 0 00 00000 34444555688898889999997766532 221 22456899999999999543
No 204
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.09 E-value=4.6e-05 Score=81.78 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=34.8
Q ss_pred EEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 221 ~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
+|+.+++|++|+.+++++.|.+++|+++.||.||.|.-.
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 799999999999888888888878888999999999774
No 205
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.08 E-value=2.2e-05 Score=88.01 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=33.3
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc--CCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN--TLKG 145 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~--~~~~ 145 (535)
.+||||||| |++|..+|..+++.|.+|+|||++ .+++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGG 154 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGG 154 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccc
Confidence 479999999 999999999999999999999975 4554
No 206
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.08 E-value=1.6e-05 Score=85.71 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=29.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
+||||||| ||+|..+|. +..|.+|+|||++.+++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~~GGt 37 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGTFGGT 37 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCCCCCe
Confidence 59999999 999988864 446999999999877664
No 207
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.08 E-value=1.1e-05 Score=93.93 Aligned_cols=98 Identities=27% Similarity=0.350 Sum_probs=65.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
..+|+||| ||||+++|+.|+++|++|+|+|+....++- + ..|+ |.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~------------l-~yGI---------------P~------ 351 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV------------L-RYGI---------------PE------ 351 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce------------E-EccC---------------CC------
Confidence 47899999 999999999999999999999997422210 0 0021 00
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
+.. +..+++...+.+++.|++++.++.+- ..+++++.....+|.||+|+|++.
T Consensus 352 -----------~rl-p~~vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~~ 404 (944)
T PRK12779 352 -----------FRL-PNQLIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAGL 404 (944)
T ss_pred -----------CcC-hHHHHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCCC
Confidence 000 12333445566677899998886542 224444444456899999999863
No 208
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.07 E-value=3.8e-05 Score=83.02 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=32.2
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
+||||| ||+|+++|..+++.|.+|+||||+.+++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~ 37 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGT 37 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccccc
Confidence 699999 99999999999999999999999876553
No 209
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.04 E-value=0.00027 Score=75.24 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEE-EcCC--eEEEcCeEEEccCCChHHHHHhCC-CCCCCCCceeE
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL-LAEG--KILSSHLIIDAMGNFSPVVKQAFP-AGSGPLDRTTY 280 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~-~~~G--~~i~a~lVV~AdG~~S~v~~~~~p-~~~~~~~~~~~ 280 (535)
.++.+.|.+.+++.|++++.+++|++++.+++++++. ..+| ..++||.||.|+|.+.. ..+- ..++ ...-
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s---~GL~a~~~~---i~Ep 332 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFFS---GGLVAERDG---IREP 332 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCccc---CceeccCCc---cccc
Confidence 4677888888888999999999999998777766543 3344 45899999999996421 1110 0000 0000
Q ss_pred EEEEecCCCCCCChHHHH-HHHhhhccCccCCCCCccchhcchhccccCCCCCCC----CccCCCeeEeecCCCccccc-
Q 009427 281 MFTYIDPQAGSPKLEELL-ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL----PAAFNRILQFGDASGIQSPV- 354 (535)
Q Consensus 281 ~~~y~~~~~~~~~l~~~~-~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl----~~~~~rvlliGDAA~~~~P~- 354 (535)
.|.. ++ ....+-.+++ ..||.-.| +.+ +|+.......|+ ....+++.++|+.-+-.+|.
T Consensus 333 if~l-~v-~~~~~r~~w~~~~~~~~~p-----------~~~--~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~ 397 (422)
T PRK05329 333 IFGL-DV-LQPADRADWYQRDFFAPHP-----------FLQ--FGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIR 397 (422)
T ss_pred cCCC-CC-CCCCchhhhhhhhhccCCc-----------hhh--cCceECCCcCcccCCCCeeccceEEeeehhcCCchHH
Confidence 0100 00 0111111222 12221111 000 122111111121 12258999999988777765
Q ss_pred ccccchHHHHHHHHHHHHHHHH
Q 009427 355 SFGGFGSLTRHLGRLSTGVYEA 376 (535)
Q Consensus 355 ~G~Gi~~al~da~~La~~l~~a 376 (535)
-|.|-+.++..+..+++.|.+.
T Consensus 398 ~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 398 EGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred hCCCchhHHHHHHHHHHHHHHh
Confidence 6788888999999998887653
No 210
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.01 E-value=0.00012 Score=79.90 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CC--eEE--EEEc-CC--e---EEEcCeEEEccCCCh
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--AAV--LLLA-EG--K---ILSSHLIIDAMGNFS 261 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-~~--gv~--v~~~-~G--~---~i~a~lVV~AdG~~S 261 (535)
..+...|.+.+++.|++++.+++|++|..+ ++ +.+ |.+. +| + ...+|+||+|+|...
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 567888999999999999999999999875 22 322 2222 23 1 357899999999753
No 211
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.99 E-value=6.9e-05 Score=78.85 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=73.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-+|+||| |+.|+-+|..|++.|.+|+++|+...... ..++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-----------------~~~~---------------------- 182 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-----------------SLMP---------------------- 182 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-----------------hhCC----------------------
Confidence 4799999 99999999999999999999998621000 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
..+...+.+.+.+.|++++.+++++++..+++++.+.+.+|+++.+|+||.|+|...
T Consensus 183 ---------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 183 ---------------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred ---------------HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCc
Confidence 011133555666789999999999999776667777788888999999999999643
No 212
>PRK12831 putative oxidoreductase; Provisional
Probab=97.99 E-value=1.9e-05 Score=85.37 Aligned_cols=33 Identities=33% Similarity=0.352 Sum_probs=31.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..||+||| ||+|+++|+.|++.|++|+|+|+..
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 57999999 9999999999999999999999874
No 213
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.96 E-value=6.9e-05 Score=81.06 Aligned_cols=57 Identities=9% Similarity=0.187 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHh
Q 009427 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQA 267 (535)
Q Consensus 207 l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~ 267 (535)
|.+.|.+.+.+ ++|+.+++|++|+.+++++.|.+.+|+++.||.||.|.- ......+
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p--~~~~~~l 284 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP--HDIAETL 284 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC--HHHHHhh
Confidence 44444444322 579999999999988888888887787899999999984 3344443
No 214
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.94 E-value=2e-05 Score=81.74 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=71.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC-cccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN-RCGF 186 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~-~~~~ 186 (535)
.||+|+|| ||++|++|+.|...+ .+++.+||.+-..++..+-+....++. ..+ .. +....+|. ...|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~----~fl-----~D-lvt~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV----SFL-----KD-LVTLRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-----TT-----SS-SSTTT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc----ccc-----cc-cCcCcCCCCcccH
Confidence 58999999 999999999999886 999999998543333221100000000 000 00 00011111 1111
Q ss_pred cc----cCccee-eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEc----CCeEEEcCeE
Q 009427 187 EG----KGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLI 253 (535)
Q Consensus 187 ~~----~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~----gv~v~~~----~G~~i~a~lV 253 (535)
.. .+.++. .+.......+..+.+.|.-.+.+.+..+.++++|++|...++ .+.|.+. +++++.|+.|
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~v 151 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNV 151 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEE
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeE
Confidence 10 111110 000112234566667776666666666888999999987654 3677773 2468999999
Q ss_pred EEccC
Q 009427 254 IDAMG 258 (535)
Q Consensus 254 V~AdG 258 (535)
|.|+|
T Consensus 152 Vla~G 156 (341)
T PF13434_consen 152 VLATG 156 (341)
T ss_dssp EE---
T ss_pred EECcC
Confidence 99999
No 215
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.93 E-value=0.0001 Score=78.04 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=71.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-+|+||| |..|+-+|..|++.|.+|+|+|+..... ... ..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l------------~~~------------------~~--------- 185 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM------------GRN------------------AP--------- 185 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch------------hhh------------------cC---------
Confidence 3699999 9999999999999999999999862100 000 00
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|+++.. ++.+.+.+.+|+++.||+||.|.|..
T Consensus 186 ---------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 186 ---------------PPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred ---------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 01113455566678999999999999865 45566777788889999999999964
No 216
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=2.4e-05 Score=81.36 Aligned_cols=138 Identities=22% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC--CC---CcccccccH----HHHHHHHHcCCCChHhHHHHHhh
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL--KG---REQEWNISR----KELLELVESGILVEDDIDEATAT 177 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~--~~---~~~~~~is~----~~l~~L~~lGl~~~~~~~~~~~~ 177 (535)
...||||||| |-||+-+|.+.||.|.+.+|+-.+.. +. .+..++++. +|++.|. |+ +.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd--Gl---------~~r 94 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD--GL---------CSR 94 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc--ch---------Hhh
Confidence 3479999999 99999999999999999999977631 11 111122222 2333331 11 111
Q ss_pred hcCCCcccccc----cCc-ceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe----EE--EEEcCC
Q 009427 178 KFNPNRCGFEG----KGE-IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA----AV--LLLAEG 245 (535)
Q Consensus 178 ~~~~~~~~~~~----~~~-~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~g----v~--v~~~~G 245 (535)
......+.|.. .++ .|.+ ...+|+..+...+.+..... +.+|+++ .|.++...+.. ++ |.+.||
T Consensus 95 vcD~s~vq~k~LNrs~GPAVwg~---RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dg 170 (679)
T KOG2311|consen 95 VCDQSGVQYKVLNRSKGPAVWGL---RAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDG 170 (679)
T ss_pred hhhhhhhhHHHhhccCCCcccCh---HHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecC
Confidence 11111111110 111 2211 23467777777776666543 4466654 56666554321 11 445689
Q ss_pred eEEEcCeEEEccCCC
Q 009427 246 KILSSHLIIDAMGNF 260 (535)
Q Consensus 246 ~~i~a~lVV~AdG~~ 260 (535)
..+.|+.||..+|.+
T Consensus 171 t~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 171 TVVYAESVILTTGTF 185 (679)
T ss_pred cEeccceEEEeeccc
Confidence 999999999999976
No 217
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.92 E-value=7e-05 Score=80.52 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=67.4
Q ss_pred cEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
+||||| |++|+++|..|++.| .+|+|||+.+...... .++.. +..+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~--------------~~~~~-----------~~~~~----- 51 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGA--------------CGLPY-----------FVGGF----- 51 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeec--------------CCCce-----------Eeccc-----
Confidence 599999 999999999999975 5899999984221100 01100 00000
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CCeEEE--cCeEEEccCCCh
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS 261 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~-~G~~i~--a~lVV~AdG~~S 261 (535)
+ -....+.....+.+.+.|++++.+++|+++..+++.+.+... +|.++. +|.+|+|+|+..
T Consensus 52 ----~--------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 52 ----F--------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred ----c--------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 0 001111112233445678999989999999766666665532 255566 999999999753
No 218
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.91 E-value=0.00013 Score=76.13 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCCChH
Q 009427 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP 262 (535)
Q Consensus 204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~~S~ 262 (535)
....++.+.+..++.|++++++|+|.+++..++. ..|.+++|.++.+|.||.|-|+.+.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 3567788999999999999999999999988775 4466678889999999999997654
No 219
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.90 E-value=1.1e-05 Score=87.89 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcCeEEEccCC
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
..+.+.|.+.+++.|++|+++++|++|..+++ ++.+...+|..+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 46889999999999999999999999998876 46666666667899999988774
No 220
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.89 E-value=1.6e-05 Score=62.22 Aligned_cols=31 Identities=35% Similarity=0.532 Sum_probs=28.4
Q ss_pred EEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 115 VCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 115 IVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
||| |++|+++|+.|+++|++|+|+|+....+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 899 9999999999999999999999986443
No 221
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.89 E-value=6.7e-05 Score=79.51 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=30.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.||+||| |++|+.+|+.||++|++|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 3799999 9999999999999999999999874
No 222
>PLN02568 polyamine oxidase
Probab=97.88 E-value=0.00016 Score=79.49 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG 258 (535)
.|.+.|.+.+. +..|+.+++|+.|..+++++.|++.+|+++.||.||.|.-
T Consensus 243 ~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 243 SVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 45565555442 3479999999999988889999998888899999999975
No 223
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.87 E-value=1.1e-05 Score=85.19 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EEEc---CCe--EEEcCeEEEccCCChHHHHH
Q 009427 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA---EGK--ILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 201 ~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~--v~~~---~G~--~i~a~lVV~AdG~~S~v~~~ 266 (535)
..|-.++.-.+.-.|..+|+.+....+|.++..++++-+ +.+. .|+ +|+|+.||.|+|.+|--.++
T Consensus 220 Q~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~ 292 (680)
T KOG0042|consen 220 QHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRK 292 (680)
T ss_pred CCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHh
Confidence 345667777777778889999999999999988776522 2222 343 58999999999999977766
No 224
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.86 E-value=0.0001 Score=77.22 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=41.0
Q ss_pred HHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427 209 EIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 209 ~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG 258 (535)
+.|.+++.+ .|..|..+.+|.+|.+++++|+|++.+.+++.+|++|++-=
T Consensus 209 d~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 209 DQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred HHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence 455566554 47789999999999999999999997756899999999853
No 225
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.79 E-value=0.00029 Score=77.35 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=56.0
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--eEEEcCeEEEccCCChHHHHH
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~---~G--~~i~a~lVV~AdG~~S~v~~~ 266 (535)
+..+|+.++...+.+.+.++|++++.+++|+++..+++++. |++. +| .+++|+.||.|+|.|+.-..+
T Consensus 122 dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 195 (516)
T TIGR03377 122 DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAE 195 (516)
T ss_pred CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHH
Confidence 35689999999999999999999999999999988777543 3332 34 379999999999999977655
No 226
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.79 E-value=0.00011 Score=85.09 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=31.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.-+|+||| ||+|+++|+.|+++|++|+|+|+..
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 46899999 9999999999999999999999874
No 227
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.78 E-value=0.00064 Score=71.43 Aligned_cols=114 Identities=15% Similarity=0.271 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe-EEEcCeEEEccCCCh-HHHHHhCCCCCCCCCceeEEEEEec
Q 009427 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFS-PVVKQAFPAGSGPLDRTTYMFTYID 286 (535)
Q Consensus 209 ~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~-~i~a~lVV~AdG~~S-~v~~~~~p~~~~~~~~~~~~~~y~~ 286 (535)
+...+.+++.|++++.++.|+++ +++++++. +|. +|.|+.+|-|.|... ++.+++.|. +
T Consensus 213 ~~a~~~L~~~GV~v~l~~~Vt~v--~~~~v~~~--~g~~~I~~~tvvWaaGv~a~~~~~~l~~~---------------e 273 (405)
T COG1252 213 KYAERALEKLGVEVLLGTPVTEV--TPDGVTLK--DGEEEIPADTVVWAAGVRASPLLKDLSGL---------------E 273 (405)
T ss_pred HHHHHHHHHCCCEEEcCCceEEE--CCCcEEEc--cCCeeEecCEEEEcCCCcCChhhhhcChh---------------h
Confidence 44555667789999999999998 45666554 455 599999999999742 222221010 0
Q ss_pred CCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCCCcc-CCCeeEeecCCCccc----ccccccchH
Q 009427 287 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQS----PVSFGGFGS 361 (535)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~----P~~G~Gi~~ 361 (535)
. ++. ..+... ..+... .+.|+.+||+|...+ |-++|.
T Consensus 274 ~--dr~---------------------Grl~V~------------~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~--- 315 (405)
T COG1252 274 T--DRR---------------------GRLVVN------------PTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQA--- 315 (405)
T ss_pred h--ccC---------------------CCEEeC------------CCcccCCCCCeEEEeccccCCCCCCCCChhHH---
Confidence 0 000 000000 011222 477999999998887 566765
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 009427 362 LTRHLGRLSTGVYEAVRG 379 (535)
Q Consensus 362 al~da~~La~~l~~al~~ 379 (535)
|.+.+..+++.|...++.
T Consensus 316 A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 316 AHQQGEYAAKNIKARLKG 333 (405)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 778888888888877764
No 228
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.78 E-value=4.9e-05 Score=87.20 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=31.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..||+||| ||+|+++|..|+++|++|+|+|+..
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57999999 9999999999999999999999864
No 229
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.77 E-value=0.00029 Score=76.16 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=73.1
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |+.|+-+|..|++.|.+|+|+|+.+.. + ..++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~---------------l---~~~d---------------------- 215 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL---------------L---SFLD---------------------- 215 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc---------------C---CcCC----------------------
Confidence 3699999 999999999999999999999986210 0 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|+++..+++++.+++.+|+++.+|.||.|+|..
T Consensus 216 ---------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 216 ---------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred ---------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 01123455556678999999999999987677777777778889999999999953
No 230
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.75 E-value=0.00015 Score=73.90 Aligned_cols=136 Identities=24% Similarity=0.308 Sum_probs=72.0
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC-CCCCccccc---ccHHHHHHHHHcCCCChHhHHH-HHh-hhcCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT-LKGREQEWN---ISRKELLELVESGILVEDDIDE-ATA-TKFNP 181 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~-~~~~~~~~~---is~~~l~~L~~lGl~~~~~~~~-~~~-~~~~~ 181 (535)
.+|||+||| ||.|-.+|+..++.|++.+.||++. +++. +.| +....+ |...++.. ++.. .+. +...-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGT--cLnvGcIPSKAL--L~nSh~yh--~~q~~~~~~rGi~v 111 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGT--CLNVGCIPSKAL--LNNSHLYH--EAQHEDFASRGIDV 111 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCce--eeeccccccHHH--hhhhHHHH--HHhhhHHHhcCccc
Confidence 379999999 9999999999999999999999963 4332 222 111110 00001100 0000 000 00000
Q ss_pred CcccccccCcceeeeccccc-cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccC
Q 009427 182 NRCGFEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMG 258 (535)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~-v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG 258 (535)
....+... ...... -.-..|...+...+++++++++.+.. ++ .+++.+.+...|| ..+.++.+|+|+|
T Consensus 112 s~~~~dl~------~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g--sf-~~p~~V~v~k~dg~~~ii~aKnIiiATG 182 (506)
T KOG1335|consen 112 SSVSLDLQ------AMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG--SF-LDPNKVSVKKIDGEDQIIKAKNIIIATG 182 (506)
T ss_pred cceecCHH------HHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE--ee-cCCceEEEeccCCCceEEeeeeEEEEeC
Confidence 00000000 000000 00123444555556667777776542 22 3567777777676 4699999999999
Q ss_pred C
Q 009427 259 N 259 (535)
Q Consensus 259 ~ 259 (535)
.
T Consensus 183 S 183 (506)
T KOG1335|consen 183 S 183 (506)
T ss_pred C
Confidence 5
No 231
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.75 E-value=0.00023 Score=75.43 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=67.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
.+||||| |++|+.+|..|++.|. +|+|+++.......+. .++ ..+ +. .+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~----~~~--------------~~---~~~----- 56 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLS----KSM--------------LL---EDS----- 56 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCC----HHH--------------HC---CCC-----
Confidence 4799999 9999999999999987 7999998743221110 000 000 00 000
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
..... +.+ .+...+.+++++.++.|+.+..++ ..|.+++|+++.+|.+|+|+|+..
T Consensus 57 -~~~~~--------~~~-------~~~~~~~~i~~~~g~~V~~id~~~--~~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 57 -PQLQQ--------VLP-------ANWWQENNVHLHSGVTIKTLGRDT--RELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred -ccccc--------cCC-------HHHHHHCCCEEEcCCEEEEEECCC--CEEEECCCCEEEcCEEEEccCCCC
Confidence 00000 000 012335689999999999986543 345566788899999999999764
No 232
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.74 E-value=0.00032 Score=74.65 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG 258 (535)
.|.+.|.+++.. .++.+++|+.|..+..+..+.+.+|.++.+|.||.+.=
T Consensus 216 ~l~~al~~~l~~---~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p 265 (444)
T COG1232 216 SLIEALAEKLEA---KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAP 265 (444)
T ss_pred HHHHHHHHHhhh---ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCC
Confidence 355555555543 38999999999888777777777888899999999864
No 233
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.73 E-value=0.00033 Score=75.75 Aligned_cols=95 Identities=20% Similarity=0.247 Sum_probs=72.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-+|+||| |++|+.+|..|++.|.+|+|+|+.+... ..++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------~~~~---------------------- 210 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL------------------PGED---------------------- 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC------------------CCCC----------------------
Confidence 4799999 9999999999999999999999872100 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+| .++.+|.||.|+|..
T Consensus 211 ---------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 ---------------AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred ---------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 01113345566678999999999999987777777776666 579999999999953
No 234
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.72 E-value=6.9e-05 Score=88.12 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=31.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..+|+||| ||+|+++|..|+++|++|+|+|+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47999999 9999999999999999999999874
No 235
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.67 E-value=0.00057 Score=73.93 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=71.1
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |++|+-+|..|++.|.+|+|+|+.+.. + ..++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~---------------l---~~~~---------------------- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI---------------L---PGED---------------------- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc---------------C---CcCC----------------------
Confidence 3699999 999999999999999999999986210 0 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+| +++.+|.||.|+|.
T Consensus 213 ---------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 213 ---------------KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred ---------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 01113344556678999999999999987767777776555 67999999999995
No 236
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.66 E-value=0.00044 Score=69.26 Aligned_cols=32 Identities=44% Similarity=0.632 Sum_probs=30.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
++|||||| |.+|+.+|.+||.+|.+|+|+|..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQE 37 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQE 37 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence 68999999 999999999999999999999987
No 237
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.64 E-value=4.7e-05 Score=81.60 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCeEEEccCCC
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+...|++++.+++|++|..++++ +.|++++|++++|+.||.....+
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence 457788888888899999999999999877654 45777788899999999865543
No 238
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.63 E-value=0.00022 Score=74.48 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=64.9
Q ss_pred cEEEEc-chHHHHHHHHHHHC---CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 112 DVIVCG-GTLGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
.||||| |++|+.+|..|.++ +.+|+|||+...... .+ .+..+ +...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~------~~-~~~~~--------------~~g~--------- 50 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPY------SG-MLPGM--------------IAGH--------- 50 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcc------cc-hhhHH--------------Hhee---------
Confidence 489999 99999999999744 689999998732110 00 00000 0000
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
++...+...+.+.+.+.|++++.+ +|++++.+++ +|.+++|+++.+|.+|+|+|+..
T Consensus 51 --------------~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 51 --------------YSLDEIRIDLRRLARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred --------------CCHHHhcccHHHHHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 001111122334455668988764 7999865544 56666788899999999999754
No 239
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.63 E-value=5.3e-05 Score=82.66 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCChHHH
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~S~v~ 264 (535)
..+.+.|.+.+++.|++|+.+++|++|..+++++ .|.+++|+++.||.||.|.|.+..+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHH
Confidence 4678889999999999999999999998765543 46667788899999999999776553
No 240
>PRK06116 glutathione reductase; Validated
Probab=97.61 E-value=0.00061 Score=73.46 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=71.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |+.|+-+|..|++.|.+|+++++.... + ..++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~---------------l---~~~~---------------------- 207 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP---------------L---RGFD---------------------- 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC---------------c---cccC----------------------
Confidence 3799999 999999999999999999999986210 0 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.+++|++++.++++ +.+.+.+|+++.+|.||.|+|.
T Consensus 208 ---------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 ---------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred ---------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 011134455666789999999999999766555 6677777888999999999995
No 241
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.60 E-value=0.00024 Score=76.79 Aligned_cols=33 Identities=36% Similarity=0.443 Sum_probs=31.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..+|+||| |++|+++|..|+++|++|+|+|+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 47999999 9999999999999999999999874
No 242
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.57 E-value=0.0038 Score=66.81 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=64.6
Q ss_pred cEEEEc-chHHHHHHHHHHH--------------CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh
Q 009427 112 DVIVCG-GTLGIFIATALSF--------------KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA 176 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr--------------~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~ 176 (535)
.|+||| |++|+-+|..|+. .|.+|+|||+..-. + .-++
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---------------l---~~~~--------- 227 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV---------------L---GSFD--------- 227 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc---------------c---ccCC---------
Confidence 799999 9999999999885 47889999876200 0 0000
Q ss_pred hhcCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEc
Q 009427 177 TKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (535)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~A 256 (535)
..+.+.+.+.+.+.|++++.+++|+++. ++. +.+++|+++.+|++|.|
T Consensus 228 ----------------------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~--~~~--v~~~~g~~i~~d~vi~~ 275 (424)
T PTZ00318 228 ----------------------------QALRKYGQRRLRRLGVDIRTKTAVKEVL--DKE--VVLKDGEVIPTGLVVWS 275 (424)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCEEEeCCeEEEEe--CCE--EEECCCCEEEccEEEEc
Confidence 0111345556677899999999999884 344 44668889999999999
Q ss_pred cCC
Q 009427 257 MGN 259 (535)
Q Consensus 257 dG~ 259 (535)
.|.
T Consensus 276 ~G~ 278 (424)
T PTZ00318 276 TGV 278 (424)
T ss_pred cCC
Confidence 995
No 243
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.56 E-value=0.00039 Score=74.41 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=67.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
..+||||| |.+|+.+|..|.+.+++|+|||+.... .+. ..+... ..+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~----~~~---~~l~~~-------------------~~g~----- 58 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM----LFT---PLLPQT-------------------TTGT----- 58 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc----chh---hhHHHh-------------------cccC-----
Confidence 57999999 999999999998878999999987311 110 000000 0000
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--------cCCeEEEcCeEEEccCCC
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~--------~~G~~i~a~lVV~AdG~~ 260 (535)
.+...+...+.+.+...++++. ..+|++|+.+++.+++.. .+|.++.+|++|+|+|+.
T Consensus 59 -------------~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 59 -------------LEFRSICEPVRPALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred -------------CChHHhHHHHHHHhccCCeEEE-EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence 0011111223344444566665 568999977666666532 346689999999999976
Q ss_pred h
Q 009427 261 S 261 (535)
Q Consensus 261 S 261 (535)
.
T Consensus 125 ~ 125 (424)
T PTZ00318 125 P 125 (424)
T ss_pred c
Confidence 4
No 244
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.55 E-value=0.00097 Score=71.88 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=70.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.|+||| |+.|+-+|..+++.|.+|+|+|+...... ++ +
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----------------~~-d----------------------- 206 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-----------------GF-D----------------------- 206 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-----------------cc-C-----------------------
Confidence 699999 99999999999999999999997621000 00 0
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.+++|+++..+++++.+.+.+|+++.+|.||.|+|.
T Consensus 207 --------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 --------------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred --------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 0011234455667799999999999997666777777767888999999999995
No 245
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.54 E-value=0.00098 Score=71.63 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=68.8
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.|+||| |++|+.+|..|++.|.+|+|+|+....- .-.+
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------~~~~----------------------- 197 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL------------------PREE----------------------- 197 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC------------------CCCC-----------------------
Confidence 699999 9999999999999999999999862100 0000
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++.+.+.. +|+++.+|.||.|+|..
T Consensus 198 --------------~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 198 --------------PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRK 252 (438)
T ss_pred --------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCC
Confidence 00112344556677999999999999976555565554 56789999999999953
No 246
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.54 E-value=0.00077 Score=70.19 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHH
Q 009427 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v 263 (535)
.+...+.+.++++|++|+++..|.+|..+++.++ |.++||++++++.||-=.+.|-..
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence 4556788888899999999999999988875433 667899999999888766655444
No 247
>PLN02507 glutathione reductase
Probab=97.53 E-value=0.001 Score=72.66 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=71.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
+|+||| |+.|+-+|..+++.|.+|+|+++.+..-. + ++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-----------------~-~d----------------------- 243 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-----------------G-FD----------------------- 243 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-----------------c-cC-----------------------
Confidence 699999 99999999999999999999998621000 0 00
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+|+++.+|.||.|.|.
T Consensus 244 --------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 244 --------------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred --------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 0011334455567799999999999998766777777777888999999999995
No 248
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.51 E-value=0.00063 Score=73.16 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=65.6
Q ss_pred cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
+||||| |++|+.+|..|++. +.+|+|||+.....-.. .++.. ....... .
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~--------------~~lp~------~~~~~~~-~------ 55 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFAN--------------CALPY------YIGEVVE-D------ 55 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCccccc--------------CCcch------hhcCccC-C------
Confidence 699999 99999999999987 68999999984211100 01100 0000000 0
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCeEEEEEcC-Ce--EEEcCeEEEccCCCh
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFS 261 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a-~~~G~~i~~~~~V~~i~~~~~gv~v~~~~-G~--~i~a~lVV~AdG~~S 261 (535)
. ..+.....+.+ .+.|++++.+++|++|..++..+.+...+ ++ ++.+|.+|+|+|...
T Consensus 56 ~---------------~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 56 R---------------KYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred H---------------HHcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 0 00000001122 34689999999999997766666555432 22 478999999999764
No 249
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.49 E-value=0.00042 Score=79.82 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=66.0
Q ss_pred EEEEc-chHHHHHHHHHHHC---CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 113 VIVCG-GTLGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
||||| |++|+.+|..|.+. +++|+|||+.+.....+. .+..+. .|- ...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~------~L~~~l-~g~-------------~~~------- 53 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI------LLSSVL-QGE-------------ADL------- 53 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc------cccHHH-CCC-------------CCH-------
Confidence 68999 99999999988775 579999998854322111 000000 000 000
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
..+.....+.+.+.|++++.+++|+.++.+ ...|.+.+|.++.+|.||.|+|...
T Consensus 54 ----------------~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~--~k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 54 ----------------DDITLNSKDWYEKHGITLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred ----------------HHccCCCHHHHHHCCCEEEcCCeEEEEECC--CCEEEECCCcEeeCCEEEECCCCCc
Confidence 000000112234579999999999998644 3456666788899999999999753
No 250
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.48 E-value=0.0015 Score=70.21 Aligned_cols=93 Identities=20% Similarity=0.393 Sum_probs=71.2
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.++||| |+.|+-.|..+++.|.+|+|||+... +++ .+.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~---------------------iLp----------~~D---------- 213 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDR---------------------ILP----------GED---------- 213 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC---------------------CCC----------cCC----------
Confidence 599999 99999999999999999999999721 110 000
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe--EEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~--~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+++.|+.++.+++++.++..++++.+.+++|. ++++|.|+.|.|.
T Consensus 214 --------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 214 --------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred --------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence 011134555555667899999999999877777778887765 7899999999995
No 251
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.47 E-value=0.0015 Score=70.60 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=69.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |..|+-+|..|++.|.+|+|+|+....-. ++ +
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-----------------~~-d---------------------- 206 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-----------------SF-D---------------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-----------------cc-C----------------------
Confidence 3799999 99999999999999999999998721000 00 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCC-eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G-~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.++.|+++..++++ +.+.+.+| .++.+|.||.|.|.
T Consensus 207 ---------------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 207 ---------------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred ---------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence 001133455566779999999999999765444 56666667 57999999999995
No 252
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.46 E-value=0.0015 Score=70.87 Aligned_cols=94 Identities=26% Similarity=0.387 Sum_probs=68.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |..|+-+|..|++.|.+|+|+|+... ++.. +.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~---------------------~l~~----------~d--------- 212 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR---------------------ALPN----------ED--------- 212 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC---------------------cCCc----------cC---------
Confidence 3799999 99999999999999999999997620 0000 00
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC--eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~--~G--~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.+++|+++..+++.+.+.+. +| .++.+|.||.|+|.
T Consensus 213 ---------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 ---------------AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred ---------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 011134555666789999999999999765555555543 55 47999999999995
No 253
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.45 E-value=0.0013 Score=71.18 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=68.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-+|+||| |++|+-+|..|++.|.+|+|+|+.+. .. ..++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-----~l-------------~~~d---------------------- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR-----LL-------------PREE---------------------- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-----CC-------------CccC----------------------
Confidence 4799999 99999999999999999999998621 00 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~lVV~AdG~ 259 (535)
..+...+.+.+.+.|++++.+++|++++.+++.+.+.+. +++++.+|.||.|+|.
T Consensus 207 ---------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 207 ---------------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred ---------------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 001123445556779999999999999766555555543 2367999999999995
No 254
>PRK07846 mycothione reductase; Reviewed
Probab=97.45 E-value=0.0013 Score=71.10 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=68.3
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-+|+||| |+.|+-+|..|++.|.+|+|+|+....-. . ++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-----------------~-~d~--------------------- 207 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-----------------H-LDD--------------------- 207 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----------------c-cCH---------------------
Confidence 4799999 99999999999999999999998621000 0 000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
.+.+.+. +..+.+++++.++++++++.+++++.+.+.+|+++.+|.||.|+|.
T Consensus 208 ----------------~~~~~l~-~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 260 (451)
T PRK07846 208 ----------------DISERFT-ELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR 260 (451)
T ss_pred ----------------HHHHHHH-HHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC
Confidence 0001122 2234578999999999997666677777777888999999999995
No 255
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.45 E-value=0.0015 Score=70.96 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=69.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |..|+-+|..|++.|.+|+|+|+.+... ...+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------~~~d---------------------- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL------------------AAAD---------------------- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC------------------CcCC----------------------
Confidence 3799999 9999999999999999999999862100 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~--G--~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+ | .++.+|.||.|+|.
T Consensus 224 ---------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 224 ---------------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred ---------------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 0111334455566799999999999998766676666544 3 46999999999995
No 256
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.44 E-value=0.0014 Score=71.04 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=71.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.|+||| |..|+-+|..|++.|.+|+++|+...... . .+
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-----------------~-~d----------------------- 217 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-----------------G-ED----------------------- 217 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-----------------C-CC-----------------------
Confidence 699999 99999999999999999999997621000 0 00
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
..+...+.+.+.+.|++++.++++++++.+++++.+.+.+|+++.+|.||.|.|.
T Consensus 218 --------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 218 --------------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred --------------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC
Confidence 0011334455667899999999999997767777777777888999999999995
No 257
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.44 E-value=0.00013 Score=79.51 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCC-----eEEEcCeEEEccCC
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGN 259 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G-----~~i~a~lVV~AdG~ 259 (535)
..|.+.|.+.+++.|++|+.+++|++|..+++.+ .+.+.++ +++.||.||.+...
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 4577888888888999999999999998877642 2323233 57999999998875
No 258
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.44 E-value=0.0016 Score=70.34 Aligned_cols=93 Identities=23% Similarity=0.402 Sum_probs=67.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
+|+||| |++|+-+|..|++.|.+|+|+|+...... +. +
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----------------~~-d----------------------- 210 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----------------GE-D----------------------- 210 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----------------cc-c-----------------------
Confidence 799999 99999999999999999999998621000 00 0
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF 260 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++.+.+.. +| .++.+|.||.|+|..
T Consensus 211 --------------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 211 --------------EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred --------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCc
Confidence 01113455566678999999999999976555555543 34 369999999999953
No 259
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.43 E-value=0.0012 Score=69.51 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=65.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
.|||||| |++|+.+|..|.+. ..+|+||+++......+. .+ + ..+...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~--------------~l-~-----~~~~~~--------- 53 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP--------------DL-S-----HVFSQG--------- 53 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC--------------cC-c-----HHHhCC---------
Confidence 4899999 99999999999886 467999998742111110 00 0 000000
Q ss_pred ccCcceeeeccccccCHHHHHH-HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 188 GKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~-~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
.....+.. ...+.+.+.|++++.+++|+++..+.. ++.+ ++.++.+|.||.|+|+..
T Consensus 54 --------------~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 54 --------------QRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred --------------CCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence 00111111 122234557899999999999865433 4444 577899999999999754
No 260
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.42 E-value=0.0019 Score=70.06 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=68.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |+.|+-+|..+++.|.+|+|+|+.+..-. ++ +
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-----------------~~-d---------------------- 214 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-----------------GT-D---------------------- 214 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-----------------CC-C----------------------
Confidence 3699999 99999999999999999999998621000 00 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---C--CeEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~--G~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+. + ++++.+|.||.|.|.
T Consensus 215 ---------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 215 ---------------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred ---------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC
Confidence 001133555566779999999999999766666665542 2 357999999999995
No 261
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.41 E-value=0.00046 Score=67.93 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=45.8
Q ss_pred cccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEE-EEEc---C-CeEEEcCeEEEccCCChHHHHH
Q 009427 200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-LLLA---E-GKILSSHLIIDAMGNFSPVVKQ 266 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~-v~~~---~-G~~i~a~lVV~AdG~~S~v~~~ 266 (535)
..++|..|.+.++.++++.| +++..+ .|.++..+.+.+. +..+ + ......+.+|+|+|-|++....
T Consensus 142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp 213 (380)
T KOG2852|consen 142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLP 213 (380)
T ss_pred ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhcc
Confidence 34899999999999999876 666665 6778753333222 1111 1 3457889999999999876544
No 262
>PLN02576 protoporphyrinogen oxidase
Probab=97.38 E-value=0.0002 Score=78.06 Aligned_cols=40 Identities=38% Similarity=0.522 Sum_probs=34.4
Q ss_pred CCCcccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccC-CCCC
Q 009427 107 AVGTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNT-LKGR 146 (535)
Q Consensus 107 ~~~~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~-~~~~ 146 (535)
++.++||+||| |++||++|+.|+++ |++|+|+|+.. ++|+
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 34468999999 99999999999999 99999999984 4443
No 263
>PRK06370 mercuric reductase; Validated
Probab=97.38 E-value=0.0023 Score=69.34 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=68.8
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-+|+||| |+.|+-+|..|++.|.+|+|+|+...... +. +
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----------------~~-~---------------------- 211 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-----------------RE-D---------------------- 211 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-----------------cc-C----------------------
Confidence 3799999 99999999999999999999998621000 00 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+. ++.++.+|.||.|+|.
T Consensus 212 ---------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 212 ---------------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred ---------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 001133455566789999999999999776666555442 2457999999999995
No 264
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00067 Score=64.46 Aligned_cols=121 Identities=20% Similarity=0.293 Sum_probs=80.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCC-hHhHHHHHhhhcCCCcccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILV-EDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~-~~~~~~~~~~~~~~~~~~~~~ 188 (535)
-.|+||| ||++-.+|+.+++.-++-+|+|-....+-... |-++ ..+++ .| |
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pG--------------GQLtTTT~ve-----Nf-P------- 61 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPG--------------GQLTTTTDVE-----NF-P------- 61 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCC--------------ceeeeeeccc-----cC-C-------
Confidence 4799999 99999999999999999999996532221100 1000 00011 01 1
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhC
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAF 268 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~ 268 (535)
++. -++.-..|.+.+++.+.+.|.+|+.. .|.++.....-.++.+ +.+.+.||.||.|+|+.. ++..+
T Consensus 62 ---GFP-----dgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAsA--kRl~~ 129 (322)
T KOG0404|consen 62 ---GFP-----DGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGASA--KRLHL 129 (322)
T ss_pred ---CCC-----cccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccce--eeeec
Confidence 110 12334567788999999999998865 5788877666677766 556799999999999643 23335
Q ss_pred CC
Q 009427 269 PA 270 (535)
Q Consensus 269 p~ 270 (535)
|+
T Consensus 130 pg 131 (322)
T KOG0404|consen 130 PG 131 (322)
T ss_pred CC
Confidence 65
No 265
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.37 E-value=0.00086 Score=77.30 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=71.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |.+|+-+|..|++.|.+|.|+|+.+.. +.. .+ +
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l------------l~~----~l-d---------------------- 181 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL------------MAK----QL-D---------------------- 181 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch------------hhh----hc-C----------------------
Confidence 3699999 999999999999999999999976210 000 00 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
....+.+.+.+++.|++++.++.++++..++....|.+++|+++.+|+||.|.|...
T Consensus 182 ---------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 182 ---------------QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred ---------------HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 001134555666789999999999998654434456777888999999999999764
No 266
>PRK14694 putative mercuric reductase; Provisional
Probab=97.35 E-value=0.0023 Score=69.49 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=68.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.|+||| |+.|+-+|..|++.|.+|+|+++..+... .+
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~~----------------------- 217 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ-------------------ED----------------------- 217 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC-------------------CC-----------------------
Confidence 699999 99999999999999999999986411000 00
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++.+.+.+. +.++.+|.||.|.|..
T Consensus 218 --------------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 218 --------------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETN-AGTLRAEQLLVATGRT 272 (468)
T ss_pred --------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEC-CCEEEeCEEEEccCCC
Confidence 001133455566789999999999999766555666654 4469999999999953
No 267
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.34 E-value=0.00088 Score=69.82 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=30.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
.+|+||| |++|+.+|..|++.|++|+|+|+.+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5899999 99999999999999999999999743
No 268
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.33 E-value=0.0026 Score=69.12 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=67.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |++|+-+|..|++.|.+|+|+|+.+.. + ...+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i---------------l---~~~~---------------------- 220 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI---------------L---PTED---------------------- 220 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc---------------C---CcCC----------------------
Confidence 3799999 999999999999999999999987210 0 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEEE-EEcCC--eEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVL-LLAEG--KILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-~~gv~v-~~~~G--~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|+++... ++++.+ .+.+| +++.+|.||.|+|..
T Consensus 221 ---------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 221 ---------------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred ---------------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 011133445566779999999999999642 344433 34455 469999999999953
No 269
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.33 E-value=0.0011 Score=76.66 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=66.8
Q ss_pred cEEEEc-chHHHHHHHHHHHC----CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427 112 DVIVCG-GTLGIFIATALSFK----GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~----G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~ 186 (535)
+||||| |++|+.+|..|.++ +++|+||++.+.....+. .+ + ..+.. ...
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~--------------~L-~-----~~~~~-~~~----- 58 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV--------------HL-S-----SYFSH-HTA----- 58 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC--------------cc-h-----HhHcC-CCH-----
Confidence 799999 99999999999764 579999998854332111 11 0 00000 000
Q ss_pred cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
..+.....+.+.+.|++++.+++|+.+..+ ..+|.+.+|.++.+|.+|+|+|...
T Consensus 59 ------------------~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~--~~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 59 ------------------EELSLVREGFYEKHGIKVLVGERAITINRQ--EKVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred ------------------HHccCCCHHHHHhCCCEEEcCCEEEEEeCC--CcEEEECCCcEEECCEEEECCCCCc
Confidence 000000112234578999999999988543 3455666788899999999999753
No 270
>PRK14727 putative mercuric reductase; Provisional
Probab=97.33 E-value=0.0026 Score=69.29 Aligned_cols=92 Identities=25% Similarity=0.221 Sum_probs=69.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.|+||| |+.|+-+|..|++.|.+|+|+++..+-. . ++
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~------------------~-~d----------------------- 227 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF------------------R-ED----------------------- 227 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC------------------c-ch-----------------------
Confidence 699999 9999999999999999999998641100 0 00
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|+++..+++++.+.+.++ ++.+|.||.|.|..
T Consensus 228 --------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 228 --------------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred --------------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence 00113455556678999999999999977667777766444 68999999999964
No 271
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.32 E-value=0.0023 Score=70.01 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=69.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
+|+||| |+.|+-+|..|++.|.+|+|+++..... . +++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------------~-~d~---------------------- 222 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR------------------G-FDR---------------------- 222 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc------------------c-CCH----------------------
Confidence 799999 9999999999999999999998641100 0 010
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
.+.+.+.+.+++.|++++.++.++++...++.+.+.+.+|+++.+|.||.|.|.
T Consensus 223 ---------------~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 223 ---------------QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR 276 (499)
T ss_pred ---------------HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC
Confidence 011334455667799999999999887655566677767888999999999995
No 272
>PRK07208 hypothetical protein; Provisional
Probab=97.32 E-value=0.00026 Score=76.88 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EEEc--CC--eEEEcCeEEEccCCC
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA--EG--KILSSHLIIDAMGNF 260 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~--v~~~--~G--~~i~a~lVV~AdG~~ 260 (535)
..|.+.|.+.+.+.|++|+.+++|++|..++++++ +... +| .++.||.||.|....
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 35677888888888999999999999988877643 2222 34 368999999987743
No 273
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.32 E-value=0.00025 Score=74.37 Aligned_cols=32 Identities=41% Similarity=0.649 Sum_probs=30.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
+||+||| |++|+++|..|++.|.+|+|+|+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 7999999 9999999999999999999999864
No 274
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.29 E-value=0.0032 Score=67.73 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=69.7
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.|+||| |+.|+-+|..|++.|.+|+|+|+... ++. .+.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~---------------------~l~----------~~~---------- 198 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASL---------------------FLP----------RED---------- 198 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---------------------CCC----------CcC----------
Confidence 799999 99999999999999999999998621 000 000
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|++++.+++.+.+..+++ ++.+|.||.|.|..
T Consensus 199 --------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 199 --------------RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred --------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCC
Confidence 01113455666778999999999999977666666665444 58999999999953
No 275
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.29 E-value=0.0023 Score=68.42 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=68.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |++|+.+|..|++.|.+|+++++...... ..++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-----------------~~~~---------------------- 178 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-----------------KLFD---------------------- 178 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-----------------cccC----------------------
Confidence 3799999 99999999999999999999997621000 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|+++..+ +.+ +.+.+|+++.+|.||.|+|..
T Consensus 179 ---------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~-v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 179 ---------------EEMNQIVEEELKKHEINLRLNEEVDSIEGE-ERV-KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred ---------------HHHHHHHHHHHHHcCCEEEeCCEEEEEecC-CCE-EEEcCCCEEEeCEEEECCCcc
Confidence 011133455566789999999999998643 333 445578889999999999963
No 276
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.28 E-value=0.0003 Score=76.42 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=31.4
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
...+||||| |++|++||..|...|++|+|+|...
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 368999999 9999999999999999999999763
No 277
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.28 E-value=0.00022 Score=77.95 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCCChHH
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~~S~v 263 (535)
..+.+.|.+.+++.|++|+.+++|++|..++++ +.|.+++|+++.||.||.|.+.....
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 467888999999999999999999999877665 45677778889999999998864433
No 278
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.26 E-value=0.0028 Score=68.11 Aligned_cols=95 Identities=16% Similarity=0.238 Sum_probs=67.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |++|+-+|..|++.|.+|.++++... . +. ..+.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~-----~----------------l~---------~~~~--------- 190 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR-----I----------------LP---------DSFD--------- 190 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc-----c----------------Cc---------hhcC---------
Confidence 4799999 99999999999999999999987520 0 00 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+++.|++++.+++|+++..+++...+.+ ++.++.+|.||.|+|..
T Consensus 191 ---------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 191 ---------------KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVK 245 (444)
T ss_pred ---------------HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCC
Confidence 11224455666778999999999999854332233444 45579999999999964
No 279
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.24 E-value=0.0016 Score=75.44 Aligned_cols=97 Identities=21% Similarity=0.228 Sum_probs=71.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.++||| |+.|+-+|..|++.|.+|.|+|+.+.. +.. .+ +
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l------------l~~----~l-d----------------------- 186 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML------------MAE----QL-D----------------------- 186 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc------------hhh----hc-C-----------------------
Confidence 689999 999999999999999999999986210 000 00 0
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--eEEEEEcCCeEEEcCeEEEccCCChH
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP 262 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~--gv~v~~~~G~~i~a~lVV~AdG~~S~ 262 (535)
...-+.+.+.+++.|++++.++.++++..+++ ...+.+.+|+++.+|+||.|.|....
T Consensus 187 --------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 187 --------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred --------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 00113455666778999999999999965432 34566778889999999999997644
No 280
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.24 E-value=0.0016 Score=65.80 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=36.8
Q ss_pred CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 219 G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
+.+|..++.|..|..-++|+.++..||++-+.|.||.|+-..
T Consensus 231 ~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d 272 (447)
T COG2907 231 RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD 272 (447)
T ss_pred cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH
Confidence 457999999999999999999998889888899999998644
No 281
>PRK02106 choline dehydrogenase; Validated
Probab=97.23 E-value=0.0003 Score=78.08 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=31.9
Q ss_pred CcccEEEEc-chHHHHHHHHHHH-CCCcEEEEcccC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSF-KGLRVAIVERNT 142 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr-~G~~V~liEr~~ 142 (535)
.+||+|||| |++|+.+|..|++ .|++|+|||++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 369999999 9999999999999 799999999984
No 282
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.20 E-value=0.0036 Score=68.16 Aligned_cols=94 Identities=20% Similarity=0.309 Sum_probs=67.5
Q ss_pred ccEEEEc-chHHHHHHHHHHH---CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427 111 FDVIVCG-GTLGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr---~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~ 186 (535)
-.|+||| |+.|+-+|..++. .|.+|+|+|+.+..-. . ++
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-----------------~-~d------------------- 230 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-----------------G-FD------------------- 230 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-----------------c-cC-------------------
Confidence 3699999 9999999976654 4999999997621000 0 00
Q ss_pred cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCC
Q 009427 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+++.|++++.++.|+++..++++ ..+.+.+|+++.+|.||.|+|.
T Consensus 231 ------------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 231 ------------------STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred ------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 011134555666789999999999999765444 4566667778999999999995
No 283
>PRK13748 putative mercuric reductase; Provisional
Probab=97.19 E-value=0.004 Score=69.14 Aligned_cols=91 Identities=24% Similarity=0.264 Sum_probs=68.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.|+||| |+.|+-+|..|++.|.+|+|+++..+.. . +++
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~------------------~-~d~---------------------- 310 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARSTLFF------------------R-EDP---------------------- 310 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc------------------c-cCH----------------------
Confidence 699999 9999999999999999999998752100 0 000
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
.+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.++ ++.+|.||.|.|.
T Consensus 311 ---------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 311 ---------------AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred ---------------HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC
Confidence 0113344555678999999999999976666666666444 6999999999995
No 284
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.19 E-value=0.0038 Score=67.99 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=67.8
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.++||| |+.|+-+|..|++.|.+|+|+++..+.. ++ +.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------------~~-d~---------------------- 220 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------------GF-DQ---------------------- 220 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc------------------cc-CH----------------------
Confidence 699999 9999999999999999999998641110 00 10
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a~lVV~AdG~ 259 (535)
.+.+.+.+.+++.|++++.++.++++...++++.+++.++ +++.+|.||.|.|.
T Consensus 221 ---------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 221 ---------------DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred ---------------HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 0113344556677999999999988876556666666554 47999999999994
No 285
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.19 E-value=0.0035 Score=67.72 Aligned_cols=93 Identities=25% Similarity=0.320 Sum_probs=68.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.++||| |+.|+-+|..|++.|.+|+|||+.+.. + ..++++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l---------------l---~~~d~~-------------------- 211 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL---------------L---RHLDED-------------------- 211 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc---------------c---cccCHH--------------------
Confidence 3799999 999999999999999999999976210 0 000000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
+.+.+.+ ..+.+++++.+++|++++.+++++.+.+.+|+++.+|.||.|+|.
T Consensus 212 -----------------~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 212 -----------------ISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred -----------------HHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 0011222 224578999999999997766677777777778999999999995
No 286
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.18 E-value=0.003 Score=66.46 Aligned_cols=97 Identities=26% Similarity=0.377 Sum_probs=71.8
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-+|+||| |++|+.+|..|+++|++|+++|+...... .+ + .
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~------------~~-----~-----~----------------- 177 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG------------QL-----L-----D----------------- 177 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch------------hh-----h-----h-----------------
Confidence 5899999 99999999999999999999998732111 00 0 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEEcCCeEEEcCeEEEccCCCh
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v~~~~G~~i~a~lVV~AdG~~S 261 (535)
..+.+.+.+...+.|++++.++++.+++...+... +...++..+.+|+++.+.|..-
T Consensus 178 ---------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 178 ---------------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred ---------------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 11114455666778899999999999977655433 3555678899999999999543
No 287
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.15 E-value=0.00043 Score=74.71 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=35.6
Q ss_pred CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 220 ~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
++|+.+++|++|..++++++|++++|+++.||.||.|.-..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 57899999999998888888888778789999999998753
No 288
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.12 E-value=0.00056 Score=79.62 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
..||+||| ||||+++|+.|++.|++|+|+|+...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999 99999999999999999999998753
No 289
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.00059 Score=68.31 Aligned_cols=36 Identities=39% Similarity=0.572 Sum_probs=32.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
.+|.+||| |.+|+.+|..|++.|.+|+||||...-|
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 38999999 9999999999999999999999986433
No 290
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.07 E-value=0.00048 Score=75.42 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=31.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
|||+||| ||+|+++|..|+++|++|+|||++..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~ 34 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAA 34 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCc
Confidence 6999999 99999999999999999999999843
No 291
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.0071 Score=64.13 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=30.8
Q ss_pred EEEeCceEEEEEEe--CCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 221 VIFEGYSVSSICTY--ENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 221 ~i~~~~~V~~i~~~--~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
..+..++++++... ..+..+...+|.+..||.+|.|+|+.-
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~ 164 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSA 164 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCC
Confidence 34456677777665 445677778898999999999999654
No 292
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.05 E-value=0.0051 Score=66.17 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=66.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |+.|+-+|..|++.|.+|+|+|+.... + ..++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l---------------~---~~~d---------------------- 188 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI---------------N---KLMD---------------------- 188 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc---------------c---hhcC----------------------
Confidence 3799999 999999999999999999999986210 0 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..+.+.+.+.+.+.|++++.+++|++++ ++ .+.+++|+++.+|.||.|.|..
T Consensus 189 ---------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~~--~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 189 ---------------ADMNQPILDELDKREIPYRLNEEIDAIN--GN--EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred ---------------HHHHHHHHHHHHhcCCEEEECCeEEEEe--CC--EEEECCCCEEEeCEEEECcCCC
Confidence 0011334555667899999999999984 23 3455677789999999999953
No 293
>PLN02268 probable polyamine oxidase
Probab=97.05 E-value=0.00064 Score=72.89 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=36.3
Q ss_pred CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (535)
Q Consensus 218 ~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG 258 (535)
.+..|+.+++|++|..++++++|++.+|+++.||.||.|.-
T Consensus 209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P 249 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVP 249 (435)
T ss_pred ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecC
Confidence 46689999999999988889999888888899999999974
No 294
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.04 E-value=0.0061 Score=66.18 Aligned_cols=92 Identities=17% Similarity=0.210 Sum_probs=66.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
+|+||| |+.|+-+|..|++.|.+|+|||+.+..-. . ++
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-----------------~-~d----------------------- 214 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-----------------A-AD----------------------- 214 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-----------------c-CC-----------------------
Confidence 799999 99999999999999999999998721000 0 00
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--eEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~--G--~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+. +.++.++.|++++.+++++.+.+.+ + +++.+|.||.|.|.
T Consensus 215 --------------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 215 --------------KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred --------------HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 00112334444455 8889999999997766777666543 2 46999999999995
No 295
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.03 E-value=0.0082 Score=60.17 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=29.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
-||||| |.||++++..+-..|-.|+|+|+..-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s 43 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGS 43 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence 599999 99999999999999888999999853
No 296
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00067 Score=72.29 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.2
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
.|+|+| |+|||+||+.||++|++|+|+|++...|
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 599999 9999999999999999999999986544
No 297
>PTZ00058 glutathione reductase; Provisional
Probab=97.01 E-value=0.0075 Score=66.77 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=67.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |..|+-+|..|++.|.+|+|+|+.... + ..++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i---------------l---~~~d---------------------- 277 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL---------------L---RKFD---------------------- 277 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc---------------c---ccCC----------------------
Confidence 3699999 999999999999999999999986200 0 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCC-eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG-KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G-~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+++.|++++.++.|.+++.+++ ++.+...++ +++.+|.||.|+|.
T Consensus 278 ---------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 278 ---------------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 00113344556677999999999999975543 455554343 57999999999994
No 298
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.99 E-value=0.0012 Score=71.66 Aligned_cols=36 Identities=36% Similarity=0.483 Sum_probs=32.3
Q ss_pred cccEEEEc-chHHHHHHHHHHH--CCCcEEEEcccCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSF--KGLRVAIVERNTLKG 145 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr--~G~~V~liEr~~~~~ 145 (535)
..+|+||| ||+|+.+|..|++ .|++|+|+|+.+..+
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 46899999 9999999999997 799999999997544
No 299
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.98 E-value=0.0026 Score=65.30 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=55.8
Q ss_pred ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHHHH
Q 009427 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK 265 (535)
Q Consensus 199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v~~ 265 (535)
...+++..+...|.+.+.+.|++++.+++|+++..+++++. |.+.+| +++||.||.|+|+++....
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~ 197 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELL 197 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhcc
Confidence 45589999999999999999999999999999988776654 555555 7999999999999987643
No 300
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.96 E-value=0.00085 Score=72.35 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-E-EEEEcCCe-----EEEcCeEEEccCCChHHHHHhCC
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGNFSPVVKQAFP 269 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v-~v~~~~G~-----~i~a~lVV~AdG~~S~v~~~~~p 269 (535)
..+.+.+.+.+.+.|++|+.+++|++|..++++ + .|.+.+|+ ++.||.||.|.... ....++|
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~--~~~~lL~ 282 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD--IFKLLLP 282 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH--HHHhhCc
Confidence 345677777777789999999999999765555 3 25554454 79999999998753 2344444
No 301
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0062 Score=61.38 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=35.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNI 152 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~i 152 (535)
+||.|||| |-+|+++|-.+|..|.+|+++|--........|.+
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGl 62 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGL 62 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCcccc
Confidence 79999999 99999999999999999999986543333445653
No 302
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.90 E-value=0.0015 Score=61.51 Aligned_cols=37 Identities=32% Similarity=0.546 Sum_probs=31.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~ 146 (535)
+.|||||| |-+|+++||..+++ .++|++||....+++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 46999999 99999999999965 789999999865543
No 303
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.85 E-value=0.0025 Score=68.83 Aligned_cols=65 Identities=26% Similarity=0.333 Sum_probs=46.0
Q ss_pred chhhhhHHHHHhhHhHHhhhcccCccccccceeecCCCCCCCCCCCCCCCCcccEEEEc-chHHHHHHHHHHHCCCcEEE
Q 009427 59 GGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAI 137 (535)
Q Consensus 59 gg~~~~~~l~~~d~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~l 137 (535)
|+......|+++-.-|.... +...+.. + . .....||+||| |++|+++|..|++.|++|+|
T Consensus 101 ~~~v~i~~l~~~~~~~~~~~-~~~~~~~-~---~--------------~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~v 161 (449)
T TIGR01316 101 GKPVSIGALERFVADWERQH-GIETEPE-K---A--------------PSTHKKVAVIGAGPAGLACASELAKAGHSVTV 161 (449)
T ss_pred CCCccHHHHHHHHHhHHHhc-CCCcCCC-C---C--------------CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence 55677788888776665433 1100000 0 0 11247999999 99999999999999999999
Q ss_pred EcccC
Q 009427 138 VERNT 142 (535)
Q Consensus 138 iEr~~ 142 (535)
+|+..
T Consensus 162 ie~~~ 166 (449)
T TIGR01316 162 FEALH 166 (449)
T ss_pred EecCC
Confidence 99975
No 304
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.85 E-value=0.0012 Score=69.45 Aligned_cols=35 Identities=37% Similarity=0.515 Sum_probs=31.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
-+++||| |++|+.+|+.||+.|++|.|+||.+.-+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 4799999 9999999999999999999999996443
No 305
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0011 Score=73.23 Aligned_cols=34 Identities=32% Similarity=0.544 Sum_probs=32.0
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
..+||+|||| |.+|+++|..|+..|++|+|||++
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 3479999999 999999999999999999999998
No 306
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.75 E-value=0.011 Score=65.87 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE----E-EEcCCe--EEEcCeEEEccCCChHH
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~----v-~~~~G~--~i~a~lVV~AdG~~S~v 263 (535)
..+...|.+++.+.|+++++++.++++..++++.+ + ...+|+ .+.|+.||.|+|.+..+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 56888899988888999999999999987544322 2 223453 58999999999998754
No 307
>PLN02676 polyamine oxidase
Probab=96.74 E-value=0.0018 Score=70.52 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhC------CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 205 AKLIEIVKKRFISL------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 205 ~~l~~~L~~~a~~~------G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
..+.+.|.+.+.+. +..|+.+++|++|..++++++|++.+|++++||.||.|...
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 34555665554332 25799999999999988999999988989999999999874
No 308
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0016 Score=65.47 Aligned_cols=32 Identities=44% Similarity=0.640 Sum_probs=30.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
+|||+||| |.+|+++|+.|+++|.++.||-++
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 59999999 999999999999999999999887
No 309
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.72 E-value=0.0021 Score=69.82 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=31.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
..+|+||| |++|+++|..|++.|++|+|+|+.+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 47999999 99999999999999999999999753
No 310
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.67 E-value=0.023 Score=61.37 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=65.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |+.|+-+|..|++.|.+|+|+|+.+... ..++
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------~~~d---------------------- 209 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL------------------PLED---------------------- 209 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC------------------cchh----------------------
Confidence 3799999 9999999999999999999999872100 0000
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCC--eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG--KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G--~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+. ++++.++++++++.+++ .++++..++ .++.+|.||.|.|.
T Consensus 210 ---------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 210 ---------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred ---------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 00113344455566 88999999999975544 455433333 57999999999995
No 311
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.65 E-value=0.0077 Score=62.39 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=80.3
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCCccccc-----ccHHHHHHHHHcCCCChHhHHHHHhhhcCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWN-----ISRKELLELVESGILVEDDIDEATATKFNP 181 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~~~~~~-----is~~~l~~L~~lGl~~~~~~~~~~~~~~~~ 181 (535)
..+|+|.|| ||.-+++|+.|...+ .+++.+||.+--.++...- +...-+..|. ..-+|
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLV---------------Tl~~P 68 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLV---------------TLVDP 68 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhc---------------cccCC
Confidence 369999999 999999999999885 7899999986433322111 1111122221 11112
Q ss_pred C-cccccc----cCccee-eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-Ce-EE--EEEcCCeEEEcC
Q 009427 182 N-RCGFEG----KGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA-AV--LLLAEGKILSSH 251 (535)
Q Consensus 182 ~-~~~~~~----~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~g-v~--v~~~~G~~i~a~ 251 (535)
. ...|.. .+.+|. .....+.+.+..+.+.+.-.+... -.++++++|++|..-+ |. .. +.+.++.+++|+
T Consensus 69 Ts~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar 147 (436)
T COG3486 69 TSPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRAR 147 (436)
T ss_pred CCchHHHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEee
Confidence 1 111110 111111 011123355666667776666665 6678899999773322 22 22 444566789999
Q ss_pred eEEEccCCCh
Q 009427 252 LIIDAMGNFS 261 (535)
Q Consensus 252 lVV~AdG~~S 261 (535)
-+|+..|..-
T Consensus 148 ~lVlg~G~~P 157 (436)
T COG3486 148 NLVLGVGTQP 157 (436)
T ss_pred eEEEccCCCc
Confidence 9999999654
No 312
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.65 E-value=0.0021 Score=72.72 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
..+|+||| ||+|+++|..|++.|++|+|+|+...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 46999999 99999999999999999999999753
No 313
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.65 E-value=0.002 Score=74.23 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=30.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
...|+||| ||||+++|+.|++.|++|+|+|+..
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 46899999 9999999999999999999999853
No 314
>PLN02785 Protein HOTHEAD
Probab=96.65 E-value=0.0018 Score=71.96 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=31.3
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..+||+|||| |.+|+.+|..|++ +.+|+|||++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 4469999999 9999999999999 69999999985
No 315
>PLN02546 glutathione reductase
Probab=96.63 E-value=0.021 Score=63.28 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=65.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
+|+||| |..|+-+|..|++.|.+|+|+|+...... ++ +
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-----------------~~-d----------------------- 292 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-----------------GF-D----------------------- 292 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-----------------cc-C-----------------------
Confidence 699999 99999999999999999999997621000 00 0
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+.+.+.|++++.++.++++...+++ +.+.+.++....+|.||.|.|.
T Consensus 293 --------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~ 348 (558)
T PLN02546 293 --------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR 348 (558)
T ss_pred --------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecc
Confidence 001133455566789999999999999754333 4555544444558999999995
No 316
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.61 E-value=0.0022 Score=69.73 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeC--Ce---EE-EEEcCC---eEEEcCeEEEccCCC
Q 009427 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---AV-LLLAEG---KILSSHLIIDAMGNF 260 (535)
Q Consensus 207 l~~~L~~~a~~~G~~i~~~~~V~~i~~~~--~g---v~-v~~~~G---~~i~a~lVV~AdG~~ 260 (535)
+.+.+.+.+++.|++|+.+++|++|+.++ ++ ++ |.+.+| +++.||.||.|+..+
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 45667788888999999999999998754 22 22 234333 568999999999965
No 317
>PLN02529 lysine-specific histone demethylase 1
Probab=96.55 E-value=0.003 Score=71.67 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=31.5
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
...||+||| |++|+++|..|+++|++|+|+|+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 357999999 9999999999999999999999963
No 318
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.55 E-value=0.0031 Score=72.01 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=31.8
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
...+|+||| |++|+++|+.|++.|++|+|+|+..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 358999999 9999999999999999999999974
No 319
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.54 E-value=0.01 Score=62.52 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=64.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
-.||||| |.+|+.+|..|+++- .+|+||||+..--. ...+.+. .....++.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~-------~plL~ev--------------a~g~l~~~----- 57 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF-------TPLLYEV--------------ATGTLSES----- 57 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc-------chhhhhh--------------hcCCCChh-----
Confidence 4699999 999999999999974 89999999832111 0011110 00111111
Q ss_pred ccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
.+..-+.+-+...+ +.+. ..+|++|+.+.. +|.++++.++..|.+|+|.|+..
T Consensus 58 ------------------~i~~p~~~~~~~~~~v~~~-~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 58 ------------------EIAIPLRALLRKSGNVQFV-QGEVTDIDRDAK--KVTLADLGEISYDYLVVALGSET 111 (405)
T ss_pred ------------------heeccHHHHhcccCceEEE-EEEEEEEcccCC--EEEeCCCccccccEEEEecCCcC
Confidence 11111333334344 5555 558999866554 44555667899999999999764
No 320
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.51 E-value=0.0054 Score=66.50 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=31.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
..+|+||| ||+|+++|..|++.|++|+|+|+.+.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46999999 99999999999999999999998853
No 321
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.51 E-value=0.026 Score=63.61 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=63.8
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
.|+||| |..|+-.|..|++.|.+|+|||+...... + ++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-----------------~-~d~---------------------- 353 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-----------------L-LDA---------------------- 353 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-----------------c-CCH----------------------
Confidence 699999 99999999999999999999998621000 0 000
Q ss_pred cceeeeccccccCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCe--EEEEEcC-------C--------eEEEcCe
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENA--AVLLLAE-------G--------KILSSHL 252 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a-~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~-------G--------~~i~a~l 252 (535)
.+.+.+.+.. .+.|++++.++.|++++.++++ +.+.+.+ + +++.+|.
T Consensus 354 ---------------eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~ 418 (659)
T PTZ00153 354 ---------------DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS 418 (659)
T ss_pred ---------------HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence 0012222222 3578999999999999765433 5554321 1 2699999
Q ss_pred EEEccCC
Q 009427 253 IIDAMGN 259 (535)
Q Consensus 253 VV~AdG~ 259 (535)
||.|+|.
T Consensus 419 VlvAtGr 425 (659)
T PTZ00153 419 CLVATGR 425 (659)
T ss_pred EEEEECc
Confidence 9999995
No 322
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.51 E-value=0.0019 Score=71.23 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=29.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~ 142 (535)
|+|||| |.+|+.+|..|++.| ++|+|||++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 899999 999999999999998 7999999984
No 323
>PLN02612 phytoene desaturase
Probab=96.51 E-value=0.0034 Score=69.79 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQAFP 269 (535)
Q Consensus 206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv--~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p 269 (535)
.+.+.|.+.+.+.|++|+.+++|++|+.++++. .+.+.+|+++.||.||.|+.. .+.+.++|
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~--~~l~~Ll~ 372 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV--DILKLLLP 372 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH--HHHHHhCc
Confidence 455667777777899999999999998866663 256667888999999999864 34444333
No 324
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.48 E-value=0.03 Score=58.76 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=47.8
Q ss_pred cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-eEEEcCeEEEccCCCh
Q 009427 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS 261 (535)
Q Consensus 202 v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-~~i~a~lVV~AdG~~S 261 (535)
-....+++.|..++.+.|++++.+++|++| ++++..+.+.++ ..++||.||+|+|..|
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 356788999999999999999999999998 444566766433 5699999999999765
No 325
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.47 E-value=0.025 Score=57.40 Aligned_cols=37 Identities=35% Similarity=0.500 Sum_probs=33.0
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKG 145 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~ 145 (535)
.+||.+||| |-.|++.|...+..|.+|.|+|.. .+++
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGG 57 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGG 57 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCc
Confidence 379999999 999999999999999999999987 4443
No 326
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.39 E-value=0.0041 Score=66.31 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCeEEEcCeEEEcc
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAM 257 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~~i~a~lVV~Ad 257 (535)
..|-|...+.+.=.|+.+..++.|.++..++++..+.+ .+|++++|+.||+..
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dp 285 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDP 285 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECC
Confidence 46778888877778999999999999988776655433 378899999999543
No 327
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.37 E-value=0.013 Score=61.81 Aligned_cols=96 Identities=26% Similarity=0.364 Sum_probs=72.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
--|+++| |..|+-+|..|...+.+|++|++.+-. +..+ |.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~------------~~~l------------------f~~-------- 255 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL------------LPRL------------------FGP-------- 255 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc------------hhhh------------------hhH--------
Confidence 3499999 999999999999999999999986211 0001 110
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
.+-+...+..++.|++++.++.+.+++.+++| ..|.+.+|.++.||+||.+.|+.
T Consensus 256 ----------------~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 256 ----------------SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred ----------------HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 01144555567789999999999999877754 34667889999999999999964
No 328
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.35 E-value=0.0046 Score=69.91 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=31.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
..+|+||| ||+|+++|+.|++.|++|+|+|+...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46999999 99999999999999999999999753
No 329
>PLN02487 zeta-carotene desaturase
Probab=96.31 E-value=0.0052 Score=68.00 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeC--Ce---E-EEEE---cCCeEEEcCeEEEccCCC
Q 009427 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---A-VLLL---AEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~--~g---v-~v~~---~~G~~i~a~lVV~AdG~~ 260 (535)
.+.+.+.+.+++.|++|+.+++|.+|..+. ++ + -+.+ .+++++.+|.||.|.+.+
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 466778888889999999999999998873 33 2 2344 234568999999999965
No 330
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.28 E-value=0.029 Score=61.66 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=62.3
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-+|+||| |+.|+-+|..|++.|.+|+|+|+... + .. .
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~---------------------l-~~---~----------------- 390 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE---------------------L-KA---D----------------- 390 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc---------------------C-Ch---h-----------------
Confidence 3799999 99999999999999999999986510 0 00 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEcC---C--eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~-v~~~~---G--~~i~a~lVV~AdG~ 259 (535)
+.+.+.+.+ .|++++.++.++++..+++.+. |.+.+ | +++.+|.||.|.|.
T Consensus 391 -------------------~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 391 -------------------KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred -------------------HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 012223333 5899999999999865444433 44432 2 46999999999995
No 331
>PRK10262 thioredoxin reductase; Provisional
Probab=96.17 E-value=0.04 Score=56.46 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=63.8
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |..|+-+|..|++.|.+|+++++..... . + .
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-------------------~-~-~-------------------- 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-------------------A-E-K-------------------- 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-------------------C-C-H--------------------
Confidence 3799999 9999999999999999999999862100 0 0 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcC----C--eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAE----G--KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~----G--~~i~a~lVV~AdG~ 259 (535)
.+.+.+.+++++.|++++.++.++++..+++++ .|++.+ + +++.+|.||.|.|.
T Consensus 186 ----------------~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 186 ----------------ILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred ----------------HHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 001223444556788999999999986544332 233322 1 46999999999995
No 332
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.08 E-value=0.0079 Score=67.86 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=31.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
..+|+||| ||+|+++|..|++.|++|+|+|+...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46899999 99999999999999999999999864
No 333
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.03 E-value=0.062 Score=53.94 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=61.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-.|+||| |+.|+-+|..|++.|.+|.++++.+. + .. .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~----------------~---~~-~---------------------- 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK----------------F---RA-E---------------------- 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc----------------c---Cc-C----------------------
Confidence 4799999 99999999999999999999987520 0 00 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc---CC--eEEEcCeEEEccCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGN 259 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~---~G--~~i~a~lVV~AdG~ 259 (535)
..+.+.+.+. |++++.++.++++..++....+.+. +| .++.+|.||.|+|.
T Consensus 180 -------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 180 -------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred -------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 0122334445 8899999999998654321223321 23 57999999999994
No 334
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.01 E-value=0.0091 Score=64.20 Aligned_cols=54 Identities=35% Similarity=0.415 Sum_probs=40.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---------cccHHHHHHHHHcC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---------NISRKELLELVESG 164 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---------~is~~~l~~L~~lG 164 (535)
-.|.||| ||+|+++|..|++.|+.|+++|+....++--.+ ++..+.++.|.+.|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G 187 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG 187 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence 5799999 999999999999999999999998644431111 14445666666656
No 335
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.98 E-value=0.0096 Score=64.15 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=30.9
Q ss_pred cccEEEEc-chHHHHHHHHH-HHCCCcEEEEcccCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATAL-SFKGLRVAIVERNTLKG 145 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~L-Ar~G~~V~liEr~~~~~ 145 (535)
...|+||| ||+|+.+|..| ++.|++|.|+||.+.++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 35799999 99999999975 56799999999997554
No 336
>PRK13984 putative oxidoreductase; Provisional
Probab=95.93 E-value=0.017 Score=64.78 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=32.4
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK 144 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~ 144 (535)
...+|+||| |++|+++|..|+++|++|+|+|+....
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 357899999 999999999999999999999987543
No 337
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.93 E-value=0.0082 Score=66.72 Aligned_cols=34 Identities=32% Similarity=0.301 Sum_probs=31.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
.-+|+||| ||+|+++|..|++.|++|+|+|+.+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 35899999 99999999999999999999998753
No 338
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.85 E-value=0.011 Score=64.33 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=31.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..+|+||| |++|+++|..|++.|++|+|+|+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 36999999 9999999999999999999999875
No 339
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.85 E-value=0.082 Score=57.09 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=29.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+||| |..|+-+|..|++.|.+|+|+++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 3799999 999999999999999999999876
No 340
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.81 E-value=0.086 Score=57.00 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
-.|+||| |..|+-+|..|++.|. +|+++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4799999 9999999999999998 89999875
No 341
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.77 E-value=0.093 Score=54.75 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 210 ~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
.+.+.+.+.|++++.+++++++. ++ .+.+.+|.++.+|.||.|.|..
T Consensus 196 ~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 196 LVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCC
Confidence 34555667899999999999874 33 3556678889999999999954
No 342
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.74 E-value=0.2 Score=51.98 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=67.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCC--cccc---cccHHHHHHHHHcCCCChHhHHHHHhhhcCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGR--EQEW---NISRKELLELVESGILVEDDIDEATATKFNP 181 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~--~~~~---~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~ 181 (535)
...|+||| |-++.-++..|.+.+- +|.++=|.+.-.. .... -.++..++.+.. + +.+.-...+. ...
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~--l-~~~~R~~~l~-~~~- 264 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYS--L-PDEERRELLR-EQR- 264 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHT--S--HHHHHHHHH-HTG-
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhc--C-CHHHHHHHHH-HhH-
Confidence 57899999 9999999999999875 7988887741110 0000 023333333321 1 1111111111 111
Q ss_pred CcccccccCcceeeeccccccCHHHH---HHHHHHH-HH-hCCCEEEeCceEEEEEEeCC-eEEEEEcC---C--eEEEc
Q 009427 182 NRCGFEGKGEIWVEDILNLGVSPAKL---IEIVKKR-FI-SLGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSS 250 (535)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~~~~l---~~~L~~~-a~-~~G~~i~~~~~V~~i~~~~~-gv~v~~~~---G--~~i~a 250 (535)
.....+|++..+ .+.+.++ +. +.-..++.+++|++++..++ ++.+++.+ + .++.+
T Consensus 265 --------------~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 330 (341)
T PF13434_consen 265 --------------HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEV 330 (341)
T ss_dssp --------------GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEE
T ss_pred --------------hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEec
Confidence 001122343322 2222222 22 12468999999999998884 78888754 2 56899
Q ss_pred CeEEEccC
Q 009427 251 HLIIDAMG 258 (535)
Q Consensus 251 ~lVV~AdG 258 (535)
|.||.|||
T Consensus 331 D~VilATG 338 (341)
T PF13434_consen 331 DAVILATG 338 (341)
T ss_dssp SEEEE---
T ss_pred CEEEEcCC
Confidence 99999999
No 343
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.026 Score=56.95 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=31.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
--|.||| |.||.-+|+.+|++|++|.|.|=.+...
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 3588999 9999999999999999999999775443
No 344
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.70 E-value=0.087 Score=54.86 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=27.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLR-VAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~ 141 (535)
.|+||| |..|+-+|..|++.|.+ |+|+++.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 699999 99999999999999997 9999875
No 345
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.64 E-value=0.059 Score=53.72 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=38.8
Q ss_pred cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (535)
Q Consensus 200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~ 264 (535)
+..+..+++..|.+++.++|+++.. .+|++++.- .+ -.+|+||.|+|-++...
T Consensus 146 ~~sE~~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~--------~~---~~~DVivNCtGL~a~~L 198 (342)
T KOG3923|consen 146 YLSEGPKYLPYLKKRLTENGVEFVQ-RRVESLEEV--------AR---PEYDVIVNCTGLGAGKL 198 (342)
T ss_pred eeccchhhhHHHHHHHHhcCcEEEE-eeeccHHHh--------cc---CCCcEEEECCccccccc
Confidence 4456788999999999999998773 466665321 01 35899999999887543
No 346
>PLN03000 amine oxidase
Probab=95.63 E-value=0.015 Score=66.64 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=31.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..||+||| |++|+++|..|++.|++|+|+|+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 217 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK 217 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 58999999 9999999999999999999999974
No 347
>PLN02976 amine oxidase
Probab=95.57 E-value=0.015 Score=69.21 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=31.5
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
...||+||| |++|+++|+.|++.|++|+|+|+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~ 726 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS 726 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence 358999999 9999999999999999999999874
No 348
>PRK12831 putative oxidoreductase; Provisional
Probab=95.47 E-value=0.14 Score=55.61 Aligned_cols=31 Identities=32% Similarity=0.310 Sum_probs=29.1
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+||| |.+|+-+|..|.+.|.+|+|+++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 4799999 999999999999999999999876
No 349
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.43 E-value=0.013 Score=64.25 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=32.0
Q ss_pred CCCcccEEEEc-chHHHHHHHHHHHC-CCcEEEEccc
Q 009427 107 AVGTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERN 141 (535)
Q Consensus 107 ~~~~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~ 141 (535)
....||.|||| |.||+.+|..|++. .++|+|+|++
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaG 90 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAG 90 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecC
Confidence 44479999999 99999999999997 6899999998
No 350
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.26 E-value=0.056 Score=56.07 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
..|-++-.++.++.|+.++-+..|.++......+++.++||.+++.|+||+|.|.-
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEE 448 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCC
Confidence 33446777888888999999999999988778889999999999999999999964
No 351
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.23 E-value=0.14 Score=56.31 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=61.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
+|+||| |..|+-+|..|+..|.+|+|+++..... . +
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------~-~----------------------- 389 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------A-D----------------------- 389 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-------------------c-c-----------------------
Confidence 799999 9999999999999999999998762100 0 0
Q ss_pred cceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEc---CC--eEEEcCeEEEccCC
Q 009427 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGN 259 (535)
Q Consensus 191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~-v~~~---~G--~~i~a~lVV~AdG~ 259 (535)
..+.+...+ .|++++.++.++++..+++.++ +.+. +| .++.+|.|+.|.|.
T Consensus 390 ------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 390 ------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred ------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 011222223 4889999999999875544332 3332 23 36999999999995
No 352
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.15 E-value=0.17 Score=55.03 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=25.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
.|+||| |..|+-+|..+.+.|. +|++++..
T Consensus 283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 699999 9999999999999986 68866654
No 353
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.01 E-value=0.074 Score=53.51 Aligned_cols=35 Identities=43% Similarity=0.525 Sum_probs=29.6
Q ss_pred CCCcccEEEEc-chHHHHHHHHHHHC-CC-cEEEEccc
Q 009427 107 AVGTFDVIVCG-GTLGIFIATALSFK-GL-RVAIVERN 141 (535)
Q Consensus 107 ~~~~~DVvIVG-G~aGl~~A~~LAr~-G~-~V~liEr~ 141 (535)
+..++.|+||| |.+|+.+|..+.++ |. +|.|||..
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 34579999999 99999999999876 43 79999876
No 354
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.88 E-value=0.39 Score=51.54 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=29.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHC----CCcEEEEcccCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFK----GLRVAIVERNTLK 144 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~----G~~V~liEr~~~~ 144 (535)
-++=||| |+|+|++|..|-|. |-+|.|+|+....
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 4688999 99999999999987 6799999998543
No 355
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=94.72 E-value=0.036 Score=57.79 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=29.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcE--EEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRV--AIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V--~liEr~~ 142 (535)
..+|+||| |++||++|++|++++.+| +|+|..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 47999999 999999999999998876 4589874
No 356
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.63 E-value=0.084 Score=58.70 Aligned_cols=95 Identities=21% Similarity=0.360 Sum_probs=68.0
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccCc
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
.+||| |..|+-+|..|...|.+|.|++=.+ ..++ ..++..
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~------------~lMe----------rQLD~~----------------- 188 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAP------------TLME----------RQLDRT----------------- 188 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecc------------hHHH----------HhhhhH-----------------
Confidence 68999 9999999999999999999997431 0010 011100
Q ss_pred ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (535)
Q Consensus 192 ~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S 261 (535)
.+ +.|.+...+.|.+++.+...+.+..++.-..+.++||..+.|++||-|+|..-
T Consensus 189 --------ag-------~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 189 --------AG-------RLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred --------HH-------HHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccc
Confidence 00 34666667789999888777776543333457888999999999999999753
No 357
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.038 Score=57.14 Aligned_cols=39 Identities=33% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
++.||||||| |..=..+|.+++|.|.+|+=+|++..-|+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 4479999999 99999999999999999999999986654
No 358
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.42 E-value=0.3 Score=58.05 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=62.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 188 (535)
-.|+||| |+.|+.+|..|++.|. .|+|+|..+.. .
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------------~---------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------------S---------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------------h----------------------------
Confidence 3799999 9999999999999996 47888865100 0
Q ss_pred cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--eEEEEEc--CCeEEEcCeEEEccCCChH
Q 009427 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLA--EGKILSSHLIIDAMGNFSP 262 (535)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~--gv~v~~~--~G~~i~a~lVV~AdG~~S~ 262 (535)
..+.+++++.|++++.++.++.+..++. ++++... +++++.||.|+.+.|....
T Consensus 355 --------------------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 355 --------------------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred --------------------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence 0122344567899999999988854332 2333321 3467999999999997643
No 359
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.16 E-value=0.41 Score=55.19 Aligned_cols=31 Identities=32% Similarity=0.305 Sum_probs=28.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~ 141 (535)
-.|+||| |.+|+-+|..+.+.|.+ |+|+++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3799999 99999999999999997 9999876
No 360
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.06 E-value=0.19 Score=54.85 Aligned_cols=34 Identities=41% Similarity=0.681 Sum_probs=31.8
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK 144 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~ 144 (535)
||||||| |++|+++|..||++|++|+|+||+...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 6999999 999999999999999999999998543
No 361
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.92 E-value=0.061 Score=50.77 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=25.8
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|+.+|..||+.|++|+.+|.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 488999 999999999999999999999987
No 362
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.56 E-value=0.66 Score=52.56 Aligned_cols=31 Identities=32% Similarity=0.314 Sum_probs=28.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
-.|+||| |..|+-+|..+.+.|. +|+|+++.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4799999 9999999999999997 59999876
No 363
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=93.53 E-value=0.093 Score=54.04 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=31.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKG 145 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~ 145 (535)
...|+||| ||||..+|..|-++ ++.|.|+|+.+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 34799999 99999999998884 79999999997654
No 364
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.13 E-value=0.12 Score=48.47 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=27.2
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
|.||| |..|...|..+++.|++|.++|++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 78999 999999999999999999999987
No 365
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=93.09 E-value=0.46 Score=49.20 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=66.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~ 189 (535)
-..+||| |..|+-.+..-.+.|-+|+++|-..--+ +.++. | +
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~------------------~~mD~-E----i-------------- 254 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG------------------GVMDG-E----I-------------- 254 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc------------------cccCH-H----H--------------
Confidence 3689999 9999999999999999999999652100 10110 0 0
Q ss_pred CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC---C--eEEEcCeEEEccCCC
Q 009427 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSSHLIIDAMGNF 260 (535)
Q Consensus 190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~---G--~~i~a~lVV~AdG~~ 260 (535)
-....+-+.+.|..+..+++|+.++.+.| .+.+++.+ + ++++||.+.+|.|..
T Consensus 255 ------------------sk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 255 ------------------SKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred ------------------HHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 01111223346899999999999998887 45555532 3 579999999999954
No 366
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.85 E-value=1.1 Score=48.77 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=28.1
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
-.|+||| |..|+-+|..+.+.|. +|+|+++.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~ 315 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRR 315 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEec
Confidence 4799999 9999999999999996 69999876
No 367
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=92.74 E-value=0.13 Score=59.40 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=31.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
-..|.||| ||+|+++|-.|-|.|+.|+|.||..-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 36899999 99999999999999999999999843
No 368
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.74 E-value=0.79 Score=54.07 Aligned_cols=31 Identities=32% Similarity=0.311 Sum_probs=28.8
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-+|+||| |.+|+-+|..+.+.|.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 3799999 999999999999999999999876
No 369
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=92.72 E-value=0.46 Score=51.91 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=29.7
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLK 144 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~ 144 (535)
||||| |++||++|+.|++.|++|+|+|++...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 68999 999999999999999999999998543
No 370
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.71 E-value=0.85 Score=50.68 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=29.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+||| |.+|+-+|..|++.|.+|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~ 175 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE 175 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeC
Confidence 4799999 999999999999999999999986
No 371
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.17 Score=51.92 Aligned_cols=36 Identities=33% Similarity=0.597 Sum_probs=33.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~ 145 (535)
.|||+|.| |+.=+.++..|+..|.+|+.|||+..-|
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 69999999 9999999999999999999999996544
No 372
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.32 E-value=0.14 Score=55.22 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=29.4
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
.|+||| |++|+++|..|+++|++|.+.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 389999 99999999999999999999998743
No 373
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.31 E-value=0.17 Score=46.37 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=28.0
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
|.|+| |..|.++|..|+++|++|.|..++
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 78999 999999999999999999999887
No 374
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=92.28 E-value=0.19 Score=53.35 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=29.9
Q ss_pred EEEeCceEEEEEEeC-CeEEEEEcCCeEEEcCeEEEcc
Q 009427 221 VIFEGYSVSSICTYE-NAAVLLLAEGKILSSHLIIDAM 257 (535)
Q Consensus 221 ~i~~~~~V~~i~~~~-~gv~v~~~~G~~i~a~lVV~Ad 257 (535)
+++.+++|..|..++ +.+++++.||+.+.||.||+.-
T Consensus 245 ~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTv 282 (498)
T KOG0685|consen 245 RIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTV 282 (498)
T ss_pred hhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEe
Confidence 344568999997664 5688999999999999999874
No 375
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.21 E-value=1.3 Score=50.32 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=27.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
-.|+||| |..|+-+|..+.+.|. +|+++.+.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 3799999 9999999999999997 69998875
No 376
>PRK04148 hypothetical protein; Provisional
Probab=92.09 E-value=0.41 Score=42.59 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=27.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.+++|| | .|...|..|++.|++|+.+|.+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECC
Confidence 3599999 9 8999999999999999999987
No 377
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.91 E-value=0.22 Score=44.86 Aligned_cols=29 Identities=31% Similarity=0.638 Sum_probs=27.7
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
|+|+| |..|+..|..|++.|++|.++.|.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 68999 999999999999999999999887
No 378
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.61 E-value=0.22 Score=48.58 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=29.4
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
+++||| |..|...|..|++.|+.|++||++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 589999 9999999999999999999999984
No 379
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.32 E-value=0.23 Score=50.77 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=28.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
+|.||| |..|...|..|+++|++|+++|+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 699999 999999999999999999999987
No 380
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=0.12 Score=53.61 Aligned_cols=35 Identities=37% Similarity=0.585 Sum_probs=32.5
Q ss_pred CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
++|||||.| |..=+.++..|+..|.+|+.+||+..
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~y 38 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDY 38 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCC
Confidence 359999999 99999999999999999999999953
No 381
>PLN02612 phytoene desaturase
Probab=90.73 E-value=0.87 Score=50.72 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=31.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..+|+||| |++|+++|+.|+++|++|+|+|+..
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~ 126 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD 126 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 47899999 9999999999999999999999974
No 382
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.72 E-value=0.26 Score=53.57 Aligned_cols=31 Identities=39% Similarity=0.558 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+||| |.+|+.+|..|+++|++|.++|+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3699999 999999999999999999999976
No 383
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=90.33 E-value=2.2 Score=50.40 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHC-C-CcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFK-G-LRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~-G-~~V~liEr~ 141 (535)
-.|+||| |.+|+-+|..+.+. | .+|.|+.+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr 702 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 702 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEcc
Confidence 3799999 99999999998887 5 389999986
No 384
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=90.25 E-value=2.4 Score=50.14 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=27.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHC-CC-cEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFK-GL-RVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~-G~-~V~liEr~ 141 (535)
-.|+||| |.+|+-+|..+.+. |. +|.++++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr 700 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 4799999 99999999998886 86 79999986
No 385
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=90.00 E-value=1.5 Score=46.09 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCC
Q 009427 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF 260 (535)
Q Consensus 207 l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~ 260 (535)
+.+...+...+.|+.+..++.|..+ ++..+.+.+.+| ++|..-++|-|+|..
T Consensus 275 l~~yae~~f~~~~I~~~~~t~Vk~V--~~~~I~~~~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 275 LVEYAENQFVRDGIDLDTGTMVKKV--TEKTIHAKTKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred HHHHHHHHhhhccceeecccEEEee--cCcEEEEEcCCCceeeecceEEEecCCCC
Confidence 3344455556678999999999987 445566666666 468888999999853
No 386
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.65 E-value=0.52 Score=40.27 Aligned_cols=29 Identities=34% Similarity=0.669 Sum_probs=27.6
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
|+||| |..|..+|..|.+.+.+|+++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 68999 999999999999988899999998
No 387
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=89.58 E-value=0.57 Score=48.92 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=40.2
Q ss_pred HHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427 211 VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (535)
Q Consensus 211 L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~ 260 (535)
+...+...|++|+.+++|++|+.+++++.+.+.+|++++||.||.|....
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred HHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence 33334445779999999999999999999999999999999999998743
No 388
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.55 E-value=0.88 Score=49.67 Aligned_cols=37 Identities=38% Similarity=0.635 Sum_probs=33.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~ 146 (535)
.+|||||| |+.||++|+.||++|++|+|+||+...++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 58999999 99999999999999999999999865443
No 389
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.53 E-value=0.42 Score=48.32 Aligned_cols=30 Identities=40% Similarity=0.624 Sum_probs=28.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|+++|++|.++|++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 599999 999999999999999999999976
No 390
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.53 E-value=0.42 Score=48.26 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=28.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|+++|++|.++|++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 489999 999999999999999999999987
No 391
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=89.46 E-value=0.35 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHCCCcEEEEcccC
Q 009427 119 TLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 119 ~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
++||+||+.|+++|++|+|+|+..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~ 24 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASD 24 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCC
Confidence 589999999999999999999984
No 392
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.44 E-value=0.44 Score=43.74 Aligned_cols=32 Identities=41% Similarity=0.537 Sum_probs=27.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
.++|+| |..|..+|..|...|.+|.|.|.+|.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 599999 99999999999999999999999853
No 393
>PLN02676 polyamine oxidase
Probab=89.28 E-value=0.91 Score=49.57 Aligned_cols=33 Identities=36% Similarity=0.521 Sum_probs=30.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~ 142 (535)
.+||+||| |++|+++|+.|+++|. +|+|+|+..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~ 60 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD 60 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 58999999 9999999999999998 599999974
No 394
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.20 E-value=0.46 Score=48.89 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=29.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.|.||| |..|...|..++..|++|.++|+.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 599999 9999999999999999999999873
No 395
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.10 E-value=0.46 Score=48.06 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=29.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.|.||| |..|...|..+++.|++|+++|+.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 699999 9999999999999999999999873
No 396
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=89.03 E-value=0.97 Score=47.63 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAMGNFSPVVKQAFP 269 (535)
Q Consensus 208 ~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~~i~a~lVV~AdG~~S~v~~~~~p 269 (535)
.+.|.+.+.+.|++|+.+++|++|+.+++++++.+ .+|+++.||.||.|.-.. ....++|
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~--~~~~ll~ 260 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR--HAASLLP 260 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH--HHHHhCC
Confidence 34467777778999999999999998888766544 367789999999987643 3344444
No 397
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.02 E-value=0.56 Score=44.81 Aligned_cols=34 Identities=29% Similarity=0.604 Sum_probs=30.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~ 143 (535)
...|+||| |-.|..+|..|++.|+ +++|+|.+.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 36799999 9999999999999999 5999998844
No 398
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=88.85 E-value=1.7 Score=48.50 Aligned_cols=59 Identities=10% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---E-EEcCC--eEEEcCeEEEccCCChHH
Q 009427 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---L-LLAEG--KILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v-~~~~G--~~i~a~lVV~AdG~~S~v 263 (535)
..+...|.+++.+.|+++++++.++++..+++.++ + ...+| ..+.|+.||.|+|.++.+
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 46788899989889999999999999987654332 2 12345 368999999999998754
No 399
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=88.27 E-value=1.6 Score=46.93 Aligned_cols=36 Identities=39% Similarity=0.636 Sum_probs=33.3
Q ss_pred CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
+++||||||| |.+|+.+|..|++.|.+|+++|++..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~ 38 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPY 38 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCC
Confidence 3479999999 99999999999999999999999853
No 400
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.11 E-value=0.6 Score=47.26 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=28.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|++.|++|.++|++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 499999 999999999999999999999987
No 401
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.11 E-value=0.6 Score=47.25 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=28.7
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|+++|++|.++|++
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 599999 999999999999999999999987
No 402
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.91 E-value=0.59 Score=48.77 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=28.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|++.|..||+.|++|+.+|.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 478999 999999999999999999999987
No 403
>PRK13984 putative oxidoreductase; Provisional
Probab=87.66 E-value=4.9 Score=45.10 Aligned_cols=37 Identities=11% Similarity=-0.053 Sum_probs=29.0
Q ss_pred ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427 336 AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 378 (535)
Q Consensus 336 ~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~ 378 (535)
+..++|+++||+++.. .+..|+.++..+|..|++.|.
T Consensus 566 Ts~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhc
Confidence 3357899999998643 356689999999999888774
No 404
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.55 E-value=0.65 Score=47.41 Aligned_cols=31 Identities=32% Similarity=0.511 Sum_probs=29.1
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
..|+|+| |..|...|..|++.|.+|.++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 4699999 999999999999999999999985
No 405
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.37 E-value=0.71 Score=46.47 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=28.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..++++|++|+++|++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 599999 999999999999999999999987
No 406
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.26 E-value=0.69 Score=46.89 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=27.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVER 140 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr 140 (535)
.|.|+| |..|...|..|++.|++|.+++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999 99999999999999999999987
No 407
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.23 E-value=0.65 Score=49.62 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
..|.||| |..|+.+|..|+++|++|.++|++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence 3599999 999999999999999999999987
No 408
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.20 E-value=5.5 Score=45.11 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=27.3
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
-.|+||| |..|+-+|..+.+.|. +|+++++.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr 484 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRR 484 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4799999 9999999998889995 79999875
No 409
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=87.18 E-value=5.1 Score=47.77 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=27.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~ 141 (535)
-.|+||| |.+|+-+|..+.+.|.+ |+++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4799999 99999999999999985 7777764
No 410
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=87.14 E-value=4.2 Score=45.78 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=37.4
Q ss_pred HHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427 215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (535)
Q Consensus 215 a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v 263 (535)
++++|++++.+.+|+.|.. +.-+|.++.|.++..|.+|.|+|....+
T Consensus 69 y~~~~i~L~~~~~v~~idr--~~k~V~t~~g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 69 YEENGITLYTGEKVIQIDR--ANKVVTTDAGRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred HHHcCcEEEcCCeeEEecc--CcceEEccCCcEeecceeEEecCccccc
Confidence 4578999999999999854 3445667788899999999999965433
No 411
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.01 E-value=0.79 Score=40.61 Aligned_cols=34 Identities=24% Similarity=0.537 Sum_probs=29.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK 144 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~ 144 (535)
..|+|+| |-.|..+|..|++.|. ++.|+|.+.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 4699999 9999999999999999 69999998654
No 412
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.96 E-value=0.71 Score=49.71 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=29.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+|+| |.+|+.+|..|++.|++|+++|+.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4699999 999999999999999999999986
No 413
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.86 E-value=0.84 Score=46.71 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=29.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
..|.||| |..|.+.|..|++.|++|.++.|+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 4699999 999999999999999999999886
No 414
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=86.85 E-value=2.4 Score=46.20 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=31.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK 144 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~ 144 (535)
-|||||| |++|+++|+.|+++|++|+|+|++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4899999 999999999999999999999999533
No 415
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.60 E-value=0.99 Score=46.82 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=30.8
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK 144 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~ 144 (535)
..|+||| |-.|..+|..|++.|+ +++|+|++.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 5799999 9999999999999998 79999998543
No 416
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.42 E-value=0.84 Score=46.16 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=28.2
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|++.|++|.+++|+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 489999 999999999999999999999985
No 417
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=86.23 E-value=2.1 Score=45.99 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=29.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
+|+||| |++|+++|+.|+++|++|+|+|+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~ 32 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD 32 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 489999 9999999999999999999999885
No 418
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=86.23 E-value=0.75 Score=49.02 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=28.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|+.+|..|++.|++|+++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence 488999 999999999999999999999987
No 419
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.06 E-value=0.85 Score=47.10 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=28.4
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|++.|++|.+++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 599999 999999999999999999999975
No 420
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.98 E-value=1.3 Score=39.67 Aligned_cols=32 Identities=31% Similarity=0.622 Sum_probs=29.1
Q ss_pred EEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427 113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK 144 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~ 144 (535)
|+||| |-.|..+|..|++.|. ++.|+|.+.+.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 89999 9999999999999998 69999988544
No 421
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.62 E-value=0.95 Score=47.57 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=29.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
..+|+|+| |.+|..+|..|.+.|.+|.++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 35799999 999999999999999999999986
No 422
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.55 E-value=1.2 Score=42.54 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK 144 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~ 144 (535)
+..|+||| |-.|..+|..|++.|. ++.|+|.+.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD 57 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence 46799999 9999999999999998 79999998543
No 423
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.51 E-value=1.1 Score=41.05 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=27.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|-+|| |-.|...|..|+++|++|.+.|+.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 588999 999999999999999999999987
No 424
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=85.50 E-value=4.6 Score=43.13 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=35.6
Q ss_pred HHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427 215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (535)
Q Consensus 215 a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~ 259 (535)
.++.|.+++.++.|+.++.... ++.+.+|+.+..+.+|+|+|.
T Consensus 137 Yke~gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred HhhcCceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence 3456899999999999976554 455668999999999999997
No 425
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.40 E-value=0.97 Score=48.08 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+|+| |+.|+.+|..+...|.+|+++|++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4799999 999999999999999999999987
No 426
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.28 E-value=1.2 Score=44.45 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=30.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK 144 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~ 144 (535)
...|+||| |-.|..+|..|++.|. +++|+|.+.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 35799999 9999999999999995 79999988543
No 427
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=84.84 E-value=5.8 Score=41.41 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=32.7
Q ss_pred hCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427 217 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (535)
Q Consensus 217 ~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~ 262 (535)
+.++.++.+++|+++... .-++.+.+| ++..|.+|.|+|+.-.
T Consensus 65 ~~~i~~~~~~~v~~id~~--~~~v~~~~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPE--NKVVLLDDG-EIEYDYLVLATGARPR 107 (415)
T ss_pred hhCCEEeeCCEEEEecCC--CCEEEECCC-cccccEEEEcCCCccc
Confidence 457899999999998543 334555566 8899999999998643
No 428
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=84.82 E-value=1.3 Score=40.96 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
...|+|+| |.+|..+|..|...|.+|.++|..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 36899999 999999999999999999999976
No 429
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.69 E-value=1.2 Score=45.23 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=28.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|++.|++|.++|++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 499999 999999999999999999999987
No 430
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.68 E-value=1.3 Score=41.19 Aligned_cols=31 Identities=32% Similarity=0.495 Sum_probs=28.6
Q ss_pred EEEEc-chHHHHHHHHHHHCCCc-EEEEcccCC
Q 009427 113 VIVCG-GTLGIFIATALSFKGLR-VAIVERNTL 143 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~ 143 (535)
|+||| |-.|..+|..|++.|.. ++|+|.+.+
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 89999 99999999999999995 999998854
No 431
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.54 E-value=1.2 Score=45.51 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=28.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|++.|++|.++|++
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 599999 999999999999999999999976
No 432
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.52 E-value=1.5 Score=43.14 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=30.6
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK 144 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~ 144 (535)
...|+||| |-.|..+|..|++.|. +++|+|.+.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 36799999 9999999999999997 68899988543
No 433
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.31 E-value=1.3 Score=45.90 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=30.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~ 143 (535)
...|+||| |-.|..+|..|++.|. ++.|+|.+.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 35799999 9999999999999999 8999999854
No 434
>PLN02268 probable polyamine oxidase
Probab=83.87 E-value=2.1 Score=45.81 Aligned_cols=31 Identities=39% Similarity=0.538 Sum_probs=29.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
+||||| |++||++|+.|.+.|++|+|+|+..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 799999 9999999999999999999999874
No 435
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=83.77 E-value=1.1 Score=42.18 Aligned_cols=32 Identities=38% Similarity=0.474 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
-.|+||| |.++.-+|..|++.|.+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 5799999 9999999999999999999998764
No 436
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.56 E-value=1.8 Score=38.44 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=29.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~ 141 (535)
.-.|+|+| |-+|-+++..|+..|.+ |.|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35799999 99999999999999998 9999876
No 437
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.45 E-value=1.3 Score=44.43 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=28.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|.+.|..|+++|++|.+++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 488999 999999999999999999999976
No 438
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=83.39 E-value=1.3 Score=46.92 Aligned_cols=32 Identities=34% Similarity=0.330 Sum_probs=29.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
-.|+|+| |+.|..+|..|...|.+|+++|+++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4799999 9999999999999999999999873
No 439
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=83.20 E-value=3.2 Score=44.68 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHC----CCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFK----GLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~----G~~V~liEr~~ 142 (535)
+.||+||| |++||++|+.|+++ |++|+|+|+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~ 39 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD 39 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence 46999999 99999999999999 99999999974
No 440
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.95 E-value=1.4 Score=48.26 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=40.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHH
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDE 173 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~ 173 (535)
-.|.||| |..|...|..+++.|++|.++|+.+-.- .+....-...++.+.+.|.++.++.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l-~~~~~~i~~~l~~~~~~G~~~~~~~~~ 68 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEAL-ARAIAGIEARLNSLVTKGKLTAEECER 68 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3599999 9999999999999999999999873110 000001123445555667555444443
No 441
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.74 E-value=1.7 Score=41.42 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=28.7
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+|+| |-.|..+|..|.+.|.+|++.|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3599999 999999999999999999999876
No 442
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.67 E-value=1.5 Score=44.76 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=28.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|++.|++|.+++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 589999 999999999999999999999986
No 443
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=82.64 E-value=1.5 Score=44.71 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=27.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
.|.||| |..|..+|+.|+.+|+ +|+++|..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999 9999999999999887 89999974
No 444
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=82.63 E-value=1.4 Score=46.56 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=26.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|+.+|..+|. |++|+++|++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECC
Confidence 388999 9999999988885 9999999987
No 445
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.57 E-value=1.5 Score=44.76 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=27.7
Q ss_pred cEEEEc-chHHHHHHHHHHHCC--CcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~ 141 (535)
.|.||| |..|.++|+.|+++| ..|.++|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 589999 999999999999999 479999987
No 446
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.50 E-value=1.6 Score=44.97 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=29.1
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
..|.||| |..|...|..|++.|++|.+++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3699999 999999999999999999999986
No 447
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=82.50 E-value=1.3 Score=39.49 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=27.2
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
++|+| |+.+.++|..++..|++|+|+|.++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 58999 9999999999999999999999773
No 448
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=82.41 E-value=1.8 Score=41.47 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=28.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|+||| |.+|...+..|.+.|.+|+|+++.
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 699999 999999999999999999999875
No 449
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.40 E-value=1.6 Score=44.96 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=28.2
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|.+.|..|++.|++|.+++|+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 488999 999999999999999999999886
No 450
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=82.17 E-value=15 Score=37.46 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=27.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-||+||| |-+.+-.|+.|++-+-+|.|+=|.
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~ 175 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRR 175 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecC
Confidence 3899999 999999999999999999999665
No 451
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.09 E-value=1.9 Score=42.57 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=30.5
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~ 143 (535)
...|+||| |..|..+|..|++.|. +++|+|.+.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 36799999 9999999999999998 6999998854
No 452
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=81.91 E-value=2 Score=39.28 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=28.1
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+||| |..|..-|..|.+.|.+|+||.+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4699999 999999999999999999999643
No 453
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.80 E-value=2.1 Score=39.76 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.8
Q ss_pred cccEEEEc-ch-HHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GT-LGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~-aGl~~A~~LAr~G~~V~liEr~ 141 (535)
...|+||| |- +|..+|..|.++|.+|.++.|.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999 85 6999999999999999999876
No 454
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.70 E-value=2 Score=41.03 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+||| |-.|...|..|.+.|.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4799999 999999999999999999999864
No 455
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=81.63 E-value=2.2 Score=41.16 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=30.4
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~ 143 (535)
...|+||| |-.|..+|..|++.|.. +.|+|.+.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 36799999 99999999999999985 999998854
No 456
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.51 E-value=1.7 Score=47.49 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=29.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.-.|+|+| |++|+.++..+...|.+|.++|.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999 999999999999999999999987
No 457
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=81.32 E-value=15 Score=40.90 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=29.6
Q ss_pred CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427 338 FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 380 (535)
Q Consensus 338 ~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~ 380 (535)
.++|+++||++.. | .-+..|+.++..+|..|+..|...
T Consensus 409 ~~~Vfa~GD~~~g--~---~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 409 RPGVFAGGDMVPG--P---RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCEEeccCcCCC--c---hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5889999999852 2 234578999999999999988643
No 458
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=81.31 E-value=3.3 Score=41.77 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=27.3
Q ss_pred EEEEc--chHHHHHHHHHHHCCCcEEEEccc
Q 009427 113 VIVCG--GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 113 VvIVG--G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
|+|.| |..|.-++.+|.+.|++|+|+|.-
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL 33 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNL 33 (329)
T ss_pred EEEecCcchhHHHHHHHHHHCCCeEEEEecC
Confidence 78888 999999999999999999999965
No 459
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=81.00 E-value=1.7 Score=46.61 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=30.9
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK 144 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~ 144 (535)
..|+|+| |..|+++|..|.+.|.+|.+.|..+..
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 4699999 999999999999999999999977543
No 460
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=80.96 E-value=1.8 Score=46.95 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=29.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.+|-||| |..|..+|..|+++|++|.+.+|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~ 33 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRT 33 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4799999 999999999999999999999987
No 461
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=80.94 E-value=1.8 Score=47.45 Aligned_cols=63 Identities=27% Similarity=0.307 Sum_probs=41.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHH
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEAT 175 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~ 175 (535)
.|.||| |..|...|..|++.|++|.++|+.+-.-. +....-...++.+.+.|.++.++.+...
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~-~~~~~i~~~l~~~~~~G~~~~~~~~~~~ 72 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAA-AARDGIAARLAKLVEKGKLTAEQADAAL 72 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 499999 99999999999999999999998731100 0001112345556666766655544433
No 462
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=80.91 E-value=1.9 Score=46.90 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=27.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCC--CcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~ 141 (535)
.|.||| |..|+.+|..||++| ++|+.+|.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 599999 999999999999984 789999977
No 463
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.76 E-value=2.3 Score=41.42 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=30.7
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK 144 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~ 144 (535)
...|+||| |-.|..+|..|++.|. +++|+|.+.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve 57 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVE 57 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEc
Confidence 35799999 9999999999999998 68899988543
No 464
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.71 E-value=2.3 Score=43.35 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=29.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..|.||| |..|.+.|..|++.|++|.+++|..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4699999 9999999999999999999999873
No 465
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=80.67 E-value=2 Score=43.36 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=27.7
Q ss_pred EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 113 VIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
|.||| |..|...|..|++.|++|.++++.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~ 31 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIG 31 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCC
Confidence 78999 999999999999999999999987
No 466
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=80.66 E-value=5.7 Score=43.88 Aligned_cols=31 Identities=35% Similarity=0.384 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+||| |.+|+=+|..|++...+|.+.=|.
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 4799999 999999999999999999998876
No 467
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.65 E-value=1.9 Score=46.37 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=28.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.|+|+| |.+|+++|..|++.|.+|.+.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 489999 9999999999999999999999763
No 468
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.63 E-value=1.8 Score=49.70 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=29.3
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|.||| |..|...|..+|+.|++|.|+|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCC
Confidence 3599999 999999999999999999999987
No 469
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.48 E-value=2.3 Score=47.26 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=30.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
+-+++||| |..|..+|..|.++|++|+++|++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d 449 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETS 449 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECC
Confidence 46899999 999999999999999999999988
No 470
>PRK08328 hypothetical protein; Provisional
Probab=80.47 E-value=2.6 Score=41.16 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=29.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~ 143 (535)
...|+||| |-.|..+|..|++.|. ++.|+|.+.+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 35799999 9999999999999998 5889998754
No 471
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=7.8 Score=39.20 Aligned_cols=50 Identities=26% Similarity=0.475 Sum_probs=36.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCCCCcccccccHHHHHHHHHcCC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGI 165 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl 165 (535)
=||||| |-.|.-++..|.|.|. ++.|+|-+.+. ...+.++....+.+.|.
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVS----lsSLNrHs~Atl~DVG~ 127 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVS----LSSLNRHSCATLADVGT 127 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhhcc----HhhhhhhhhhhHhhcCC
Confidence 389999 9999999999999997 58888876321 11234456666666675
No 472
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=80.28 E-value=1.9 Score=49.45 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=29.4
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|.||| |..|...|..+|..|++|+|+|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 4699999 999999999999999999999987
No 473
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.25 E-value=2 Score=46.47 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=29.0
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.|.|+| |.+|+++|..|.+.|++|.+.|+..
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 599999 9999999999999999999999763
No 474
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=80.23 E-value=2 Score=47.07 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=28.7
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|+++|++|.|+|+.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 599999 999999999999999999999986
No 475
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=80.19 E-value=1.5 Score=36.93 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=29.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.-.|+||| |..|..-+..|.+.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 35799999 999999999999999999999876
No 476
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.00 E-value=2.1 Score=46.81 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=28.1
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|+|+| |..|++++..|.++|.+|.+.|+.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 599999 999999999999999999999965
No 477
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=79.95 E-value=2.2 Score=45.61 Aligned_cols=32 Identities=34% Similarity=0.370 Sum_probs=29.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
-.|+|+| |..|..+|..|...|.+|+++|+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4699999 9999999999999999999999873
No 478
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.73 E-value=2.1 Score=46.16 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.2
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
+--|+|+| |-+|+++|..|.++|++|.+.|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCC
Confidence 34599999 999999999999999999999976
No 479
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=79.47 E-value=2.4 Score=42.81 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
-.|+|+| |-+|.++|+.|++.|. +|.|++|.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4799999 9999999999999998 69999886
No 480
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.35 E-value=2.3 Score=41.53 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=30.0
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~ 143 (535)
..|+||| |-.|..++-+|+|.|+ +..|||.+.+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 5799999 9999999999999998 6999999854
No 481
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.18 E-value=3.4 Score=42.26 Aligned_cols=30 Identities=23% Similarity=0.587 Sum_probs=27.0
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.|+| |..|...|+.|++.|..|+++-|.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~ 32 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRS 32 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecH
Confidence 488999 999999999999999888888665
No 482
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.09 E-value=2.5 Score=43.04 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=29.8
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
...|+|+| |.+|..+|..|.+.|.+|.+++|.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 35799999 999999999999999999999987
No 483
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.43 E-value=3 Score=40.75 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=30.9
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK 144 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~ 144 (535)
...|+||| |-.|..+|..|++.|. +.+|+|.+.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~ 47 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVC 47 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEEC
Confidence 35799999 9999999999999998 79999988543
No 484
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.23 E-value=2.4 Score=45.26 Aligned_cols=31 Identities=39% Similarity=0.478 Sum_probs=28.7
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.|+||| |..|.++|..|.++|.+|.+.|+..
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 599999 9999999999999999999999763
No 485
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=78.13 E-value=2.7 Score=42.63 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=28.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
+|.||| |..|...|..|++.|++|.++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 589999 999999999999999999999987
No 486
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=78.02 E-value=2.4 Score=48.67 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=29.3
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|.||| |..|...|..++..|++|+++|..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~ 367 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDAT 367 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCC
Confidence 4599999 999999999999999999999987
No 487
>PLN02494 adenosylhomocysteinase
Probab=77.99 E-value=2.8 Score=45.23 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=29.5
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
-.|+|+| |..|..+|..+...|.+|+++|+++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4799999 9999999999999999999999873
No 488
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=77.84 E-value=3.2 Score=40.91 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=30.0
Q ss_pred cccEEEEc-chHHHHHHHHHHHCC-----------CcEEEEcccCCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKG-----------LRVAIVERNTLK 144 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G-----------~~V~liEr~~~~ 144 (535)
...|+||| |-.|+.++-.||+.| .+++|+|.+.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 47899999 999999999999974 389999988543
No 489
>PRK08223 hypothetical protein; Validated
Probab=77.49 E-value=3.4 Score=41.67 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=30.1
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~ 143 (535)
...|+||| |-.|..+|..||+.|. ++.|+|.+.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 35799999 9999999999999998 5889998854
No 490
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.47 E-value=2.7 Score=45.17 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=28.8
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.|+|+| |.+|+++|..|+++|.+|.+.|...
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 599999 9999999999999999999999763
No 491
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.33 E-value=2.8 Score=45.07 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=28.6
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
+|+||| |..|..+|..|.+.|++|.++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 589999 999999999999999999999986
No 492
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=77.02 E-value=3 Score=42.18 Aligned_cols=31 Identities=39% Similarity=0.528 Sum_probs=29.2
Q ss_pred ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
-.|+|+| |.+|..+|..|+..|.+|.+++|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4699999 999999999999999999999986
No 493
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.61 E-value=2.8 Score=45.49 Aligned_cols=31 Identities=23% Similarity=0.062 Sum_probs=28.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
.|+|+| |-.|.++|..|.++|.+|++.|.+.
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 599999 9999999999999999999999653
No 494
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=76.59 E-value=3.1 Score=42.41 Aligned_cols=30 Identities=27% Similarity=0.572 Sum_probs=27.5
Q ss_pred cEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGL--RVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~ 141 (535)
.|+||| |-+|.++|+.|+..|. ++.|+|++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 489999 9999999999999994 79999987
No 495
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=76.55 E-value=2.7 Score=42.74 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=26.9
Q ss_pred EEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 113 VIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 113 VvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
|.||| |-.|..+|..|+..|+ +|+|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 57999 9999999999999987 99999987
No 496
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=76.31 E-value=9.3 Score=41.54 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=29.9
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~ 143 (535)
+|+||| |++|+++|+.|+++|++|+|+|+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~ 33 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSF 33 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 589999 99999999999999999999999853
No 497
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=76.09 E-value=3.4 Score=43.06 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=25.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~ 141 (535)
.|+|+| ||.|+.++..+...|. +|+++|+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 699999 9999999888888886 56667776
No 498
>PRK07208 hypothetical protein; Provisional
Probab=76.07 E-value=9 Score=41.44 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=31.3
Q ss_pred cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (535)
Q Consensus 110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~ 142 (535)
..||+||| |++||++|+.|+++|++|+|+|+..
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 57999999 9999999999999999999999974
No 499
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.62 E-value=3.1 Score=45.51 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=28.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.|+| |-+|+++|..|.++|++|.+.|..
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~ 39 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTR 39 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCC
Confidence 499999 999999999999999999999976
No 500
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=75.59 E-value=3.5 Score=41.64 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=28.3
Q ss_pred cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (535)
Q Consensus 112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~ 141 (535)
.|.||| |..|...|..|++.|++|.+++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~ 34 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRN 34 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 589999 999999999999999999999876
Done!