BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009430
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 218 bits (555), Expect = 7e-57, Method: Composition-based stats.
Identities = 97/155 (62%), Positives = 123/155 (79%)
Query: 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQE 118
K WT EEDE L+ V WK IA + P+R++VQC HRWQKVLNP+L+KGPWT+E
Sbjct: 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64
Query: 119 EDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNA 178
ED ++ +LV KYGP +WSVIAK L GRIGKQCRERWHNHLNP++KK +WT EE+ + A
Sbjct: 65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 124
Query: 179 HRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213
H+ GN+WAEIAK+LPGRTDN+IKNHWNS++++K+
Sbjct: 125 HKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 104/125 (83%)
Query: 89 FFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGK 148
+R++VQC HRWQKVLNP+L KGPWT+EED ++ E V KYGP +WS IAK L GRIGK
Sbjct: 4 VIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGK 63
Query: 149 QCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSS 208
QCRERWHNHLNP++KK +WT EE+ + AH+ GN+WAEIAK+LPGRTDN++KNHWNS+
Sbjct: 64 QCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123
Query: 209 LKKKL 213
+++K+
Sbjct: 124 MRRKV 128
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEE 119
KG WT EED+ + V + K W IA+ R QC RW LNP++ K WT+EE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 120 DDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERW 154
D I + + G +W+ IAK LPGR + W
Sbjct: 87 DRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHW 120
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 72/107 (67%), Positives = 93/107 (86%)
Query: 108 PDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAW 167
PDLVKGPWT+EED K+ ELV KYG +W++IAK L GR+GKQCRERWHNHLNP++KK +W
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSW 62
Query: 168 TLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLD 214
T EE+ + AH++ GN+WAEIAK+LPGRTDN++KNHWNS++K+K+D
Sbjct: 63 TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVD 109
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQE 118
KG WT EED+ + V + K W IA+ R QC RW LNP++ K WT+E
Sbjct: 6 VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 119 EDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKK 164
ED I E G +W+ IAK LPGR + NH N IK+
Sbjct: 66 EDRIIFEAHKVLG-NRWAEIAKLLPGRTDNAVK----NHWNSTIKR 106
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 91/105 (86%)
Query: 109 DLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWT 168
+L+KGPWT+EED ++ +LV KYGP +WSVIAK L GRIGKQCRERWHNHLNP++KK +WT
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 169 LEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213
EE+ + AH+ GN+WAEIAK+LPGRTDN+IKNHWNS++++K+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 163 bits (412), Expect = 3e-40, Method: Composition-based stats.
Identities = 70/104 (67%), Positives = 90/104 (86%)
Query: 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTL 169
L+KGPWT+EED ++ +LV KYGP +WSVIAK L GRIGKQCRERWHNHLNP++KK +WT
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 170 EEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213
EE+ + AH+ GN+WAEIAK+LPGRTDN+IKNHWNS++++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEE 119
KG WT EED+ + V + K W IA+ R QC RW LNP++ K WT+EE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 120 DDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL 158
D I + + G +W+ IAK LPGR + W++ +
Sbjct: 64 DRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTM 101
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 71/103 (68%)
Query: 111 VKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLE 170
+KGP+T+ EDD I E V + GP W I LP R KQCRERW NHL+P + K AWT E
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 171 EELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213
E+ + + G+KW+ IAK++PGRTDN+IKN WNSS+ K++
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEE 119
KG +T ED+ +R V ++W +I F P+RS QC RW L+P +VK WT EE
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 120 DDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDI 162
D+ I K G +KWSVIAK +PGR + RW++ ++ I
Sbjct: 62 DETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 95.5 bits (236), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/52 (76%), Positives = 46/52 (88%)
Query: 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161
L+KGPWT+EED ++ ELV KYGP +WSVIAK L GRIGKQCRERWHNHLNP+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPD 109
KG WT EED+ + V + K W IA+ R QC RW LNP+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161
L+KGPWT+EED ++ +LV KYGP +WSVIAK L GRIGKQCRERWHNHLNP+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPD 109
KG WT EED+ + V + K W IA+ R QC RW LNP+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 93.2 bits (230), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161
L+KGPWT+EED ++ +LV KYGP +WSVIAK L GRIGKQCRERWHNHLNP+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 25/50 (50%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPD 109
KG WT EED+ L V + K W IA+ R QC RW LNP+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 164 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLPGRTDNSIKNHWNSSL 209
K WT EE+ L+ + +G K W+ IAK L GR + W++ L
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 63/94 (67%)
Query: 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEE 171
K +T+EED K+ +LV +YG W I++ + R +QCRERW+N++NP ++ D W+ EE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 172 ELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHW 205
++ L + +G KW +I+K L R+DN+I+N W
Sbjct: 61 DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 63 WTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDK 122
+T EED L+ V + K W +I++ R+ QC RW +NP L PW+ EED
Sbjct: 4 FTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 123 ITELVSKYGPTKWSVIAKSLPGRIGKQCRERW 154
+ + ++YGP KW+ I+K L R R RW
Sbjct: 64 LDQKYAEYGP-KWNKISKFLKNRSDNNIRNRW 94
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 63 WTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKV 105
W+PEED L + + G W KI++F +RS+ +RW +
Sbjct: 56 WSPEEDMLLDQKYAEY-GPKWNKISKFLKNRSDNNIRNRWMMI 97
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 86.7 bits (213), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEE 171
K +T EED+ + V+++G + W +IA + P R +QCR+RW N+L P I WT EE
Sbjct: 11 KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 172 ELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHW 205
+ L+ + +G +WA IAK PGRTD IKN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEE 119
K +TPEEDE L+ AV+ G WK IA FP+R+ QC RW+ L P + PWT EE
Sbjct: 11 KQKFTPEEDEMLKRAVAQ-HGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 120 DDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERW 154
D + + + +YG +W++IAK PGR + RW
Sbjct: 70 DALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRW 103
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 63 WTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLN 107
WT EED L + + G+ W IA+FFP R+++ +RW + N
Sbjct: 65 WTAEEDALLVQKIQEY-GRQWAIIAKFFPGRTDIHIKNRWVTISN 108
Score = 32.0 bits (71), Expect = 0.78, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 163 KKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSL 209
KK +T EE+ L A HG+ W IA P R ++ W + L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 75.1 bits (183), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 45/53 (84%)
Query: 161 DIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213
++KK +WT EE+ L AH+ GN+WAEIAK+LPGRTDN+IKNHWNS++++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 109 DLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL 158
++ K WT+EED + + + G +W+ IAK LPGR + W++ +
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTM 50
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL 106
K WT EED L A G W +IA+ P R++ + W +
Sbjct: 5 KTSWTEEEDRILYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTM 50
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 44/52 (84%)
Query: 162 IKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213
+KK +WT EE+ + AH+ GN+WAEIAK+LPGRTDN+IKNHWNS++++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL 158
K WT+EED I + + G +W+ IAK LPGR + W++ +
Sbjct: 3 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTM 48
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL 106
K WT EED + A G W +IA+ P R++ + W +
Sbjct: 3 KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTM 48
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPD 109
K WT EEDE L+ V WK IA + P+R++VQC HRWQKVLNP+
Sbjct: 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161
L K WT+EED+K+ +LV + G W VIA LP R QC+ RW LNP+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPD 109
K WT EEDE L+ V WK IA + P+R++VQC HRWQKVLNP+
Sbjct: 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161
L K WT+EED+K+ +LV + G W VIA LP R QC+ RW LNP+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 63 WTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLN 107
WT EEDE LR V F + WK +A FP+R++ QC +RW +VL+
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 115 WTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERW 154
WT EED+++ LV ++G W +A P R +QC+ RW
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 70
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 115 WTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWT 168
W ED+ + V KYG +WS IA L + KQC+ RW+ L+P IKK W+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 63 WTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWT 116
W EDE L+ AV + W +IA +S QC RW + L+P + K W+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 63 WTPEEDETLRNAVSTF---KGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEE 119
WT EE + L A+ T+ + WKKIAE P R++ C+ R+++++ ++VK +E
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELV--EMVKAKKAAQE 63
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 114 PWTQEEDDKITELVSKY---GPTKWSVIAKSLPGRIGKQCRERW 154
PWT EE + + + Y P +W IA+++PGR K C +R+
Sbjct: 5 PWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLP--GRIGKQCRERW 154
K WT EE + + V KYG W+ I+K+ P R ++RW
Sbjct: 2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLP--GRIGKQCRERW 154
K WT EE + + V KYG W+ I+K+ P R ++RW
Sbjct: 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLP--GRIGKQCRERW 154
K WT EE + + V KYG W+ I+K+ P R ++RW
Sbjct: 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLP--GRIGKQCRERW 154
K WT EE + + V KYG W+ I+K+ P R ++RW
Sbjct: 10 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 54
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLP--GRIGKQCRERW 154
K WT EE + + V KYG W+ I+K+ P R ++RW
Sbjct: 14 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 58
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 160 PDIKKDAWTLEEELALMNAHRIHGNK------WAEIAKVLPGRTDNSIKNHWNSSLKKKL 213
P K ++T EE+ +++ R + + + EI+ +P T NSI++ + L K+L
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63
Query: 214 DFYLATGKLPPVAKSSLQNGTKDTSQSTATENLVCSNKDSDSA-AQTSSGTTDIGKPDEE 272
++ K + + N K + + +++D A A D+ + D +
Sbjct: 64 EYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPD 123
Query: 273 GGKDRLEPSALVPDMATSSSI-RPNESMD 300
G+ +L+ D T ++I R N +MD
Sbjct: 124 TGR------SLITDEDTPTAIARRNMTMD 146
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 58 RAKGGWTPEEDETLRNAVSTFKGKSWKKIAEF--FPDRSEVQCLHRWQKVLNPDLV 111
R + W EED+ LR+ V + +W KI F +R+ V RW+ + L+
Sbjct: 9 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 64
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human Trf1
Length = 69
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 58 RAKGGWTPEEDETLRNAVSTFKGKSWKKIAEF--FPDRSEVQCLHRWQKVLNPDLV 111
R + W EED+ LR+ V + +W KI F +R+ V RW+ + L+
Sbjct: 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 63
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 167 WTLEEELALMNAHRIHG----NKWAEIAKVLPGRTDNSIKNHWNSSLKKKLDF-YLATGK 221
W+ +E A A ++ ++WA +A+ + GRT +K H+ ++ D Y+ +GK
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE---DIKYIESGK 67
Query: 222 LP 223
+P
Sbjct: 68 VP 69
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1, Nmr,
18 Structures
Length = 53
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 58 RAKGGWTPEEDETLRNAVSTFKGKSWKKIAEF--FPDRSEVQCLHRWQKV 105
R + W EED+ LR+ V + +W KI F +R+ V RW+ +
Sbjct: 1 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 50
>pdb|1W45|A Chain A, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus.
pdb|1W45|B Chain B, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus
Length = 327
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 111 VKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTL- 169
+KG T E+ I ++++K T+ IAKS + GK E + L+ ++ L
Sbjct: 34 MKGIGTNEQ--AIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALM 91
Query: 170 -----EEELALMNAHRIHGNKWAEIAKVLPGRTDNSIK 202
E L +A + G K I ++L RT N ++
Sbjct: 92 YPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLR 129
>pdb|1W3W|A Chain A, The 2.1 Angstroem Resolution Structure Of Annexin A8
Length = 327
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 111 VKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTL- 169
+KG T E+ I ++++K T+ IAKS + GK E + L+ ++ L
Sbjct: 34 MKGIGTNEQ--AIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALM 91
Query: 170 -----EEELALMNAHRIHGNKWAEIAKVLPGRTDNSIK 202
E L +A + G K I ++L RT N ++
Sbjct: 92 YPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLR 129
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 167 WTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213
WT+EE+ G +W +I+K++ RT +K++ K K+
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 58
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 115 WTQEEDDKITELVSKYGPTKWSVI 138
WT+EED+K+ V KYG W+ I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 154 WHNHLNPDIKK------------DAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSI 201
WH H +I+K D WT+E+++ A HG + I ++LP ++ S+
Sbjct: 170 WHKH---NIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASL 226
Query: 202 KNHWNS 207
+ S
Sbjct: 227 VKFYYS 232
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 115 WTQEEDDKITELVSKYGPTKWSVI 138
WT+EED+K+ V KYG W+ I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 115 WTQEEDDKITELVSKYGPT-----KWSVIAKSLPGRIGKQC 150
WT EE K+ +L+ KY P +W IA L R KQ
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQV 51
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEF--FPDRSEVQCLHRWQKV 105
+ W EED+ LR+ V + +W KI F +R+ V RW+ +
Sbjct: 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 57 RRAKGGWTPEEDETLRNAVSTF-KGKS--WKKIAEFFPDRSEVQCLHRWQKVLNPDLVKG 113
R A+ WT + + L A+ + +G S W KIA P +S+ C+ R++ LV G
Sbjct: 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL-----LVSG 69
Query: 114 P 114
P
Sbjct: 70 P 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,326,417
Number of Sequences: 62578
Number of extensions: 687340
Number of successful extensions: 1266
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 100
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)