Query 009430
Match_columns 535
No_of_seqs 318 out of 1898
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 6.3E-43 2.2E-47 325.9 11.0 155 59-213 5-159 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 2.4E-36 8.2E-41 272.2 10.8 128 86-213 1-128 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.3E-29 4.4E-34 220.6 11.8 105 109-213 1-105 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 3.2E-29 1.1E-33 219.4 10.6 103 112-214 1-103 (107)
5 3zqc_A MYB3; transcription-DNA 100.0 1.2E-28 3.9E-33 223.2 11.4 130 59-193 1-130 (131)
6 3osg_A MYB21; transcription-DN 100.0 1.6E-28 5.5E-33 220.9 11.8 105 107-212 6-110 (126)
7 3zqc_A MYB3; transcription-DNA 100.0 1.7E-28 5.8E-33 222.1 11.3 103 112-214 2-104 (131)
8 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.4E-27 4.9E-32 207.6 11.8 102 59-161 3-104 (105)
9 2k9n_A MYB24; R2R3 domain, DNA 99.9 1.1E-27 3.8E-32 209.6 8.6 100 60-160 1-100 (107)
10 1h8a_C AMV V-MYB, MYB transfor 99.9 5.7E-27 2E-31 211.0 12.3 121 40-161 7-127 (128)
11 3osg_A MYB21; transcription-DN 99.9 9.5E-27 3.3E-31 209.4 10.8 101 57-159 8-108 (126)
12 1h89_C C-MYB, MYB proto-oncoge 99.9 1.4E-24 4.7E-29 202.1 9.8 120 41-161 39-158 (159)
13 1ign_A Protein (RAP1); RAP1,ye 99.7 7.3E-19 2.5E-23 172.2 4.8 131 59-212 7-200 (246)
14 2dim_A Cell division cycle 5-l 99.7 1.7E-18 5.9E-23 140.4 4.3 66 107-172 4-69 (70)
15 2dim_A Cell division cycle 5-l 99.7 5.2E-18 1.8E-22 137.6 6.3 63 58-120 7-69 (70)
16 2llk_A Cyclin-D-binding MYB-li 99.6 8.9E-16 3E-20 126.0 4.6 60 149-209 8-67 (73)
17 2juh_A Telomere binding protei 99.6 1.4E-15 4.9E-20 135.8 5.2 83 106-188 11-103 (121)
18 2roh_A RTBP1, telomere binding 99.6 1.3E-14 4.5E-19 129.8 10.9 80 53-132 24-113 (122)
19 2juh_A Telomere binding protei 99.6 4.1E-15 1.4E-19 132.9 6.9 85 52-137 9-103 (121)
20 2d9a_A B-MYB, MYB-related prot 99.5 6.9E-15 2.4E-19 115.6 5.9 57 107-163 3-59 (60)
21 2roh_A RTBP1, telomere binding 99.5 1.6E-14 5.5E-19 129.2 7.6 77 109-185 28-114 (122)
22 1gvd_A MYB proto-oncogene prot 99.5 1.3E-14 4.3E-19 111.0 5.5 52 110-161 1-52 (52)
23 1gvd_A MYB proto-oncogene prot 99.5 2.4E-14 8.4E-19 109.3 6.5 51 59-109 2-52 (52)
24 2cu7_A KIAA1915 protein; nucle 99.5 3.3E-14 1.1E-18 115.9 7.0 57 158-214 3-59 (72)
25 1ity_A TRF1; helix-turn-helix, 99.5 3.3E-14 1.1E-18 114.9 6.6 61 56-116 6-68 (69)
26 1guu_A C-MYB, MYB proto-oncoge 99.5 3E-14 1E-18 108.7 6.0 51 59-109 2-52 (52)
27 1guu_A C-MYB, MYB proto-oncoge 99.5 1.9E-14 6.7E-19 109.8 4.8 52 110-161 1-52 (52)
28 2din_A Cell division cycle 5-l 99.5 3.2E-14 1.1E-18 114.0 6.3 57 157-214 2-58 (66)
29 2d9a_A B-MYB, MYB-related prot 99.5 5.4E-14 1.9E-18 110.5 6.8 54 58-111 6-59 (60)
30 1ity_A TRF1; helix-turn-helix, 99.5 3.7E-14 1.3E-18 114.6 5.3 63 106-168 4-68 (69)
31 2llk_A Cyclin-D-binding MYB-li 99.4 5.5E-14 1.9E-18 115.3 5.2 64 97-163 8-71 (73)
32 2din_A Cell division cycle 5-l 99.4 2.5E-14 8.6E-19 114.6 2.2 59 105-165 2-60 (66)
33 3sjm_A Telomeric repeat-bindin 99.4 1.3E-13 4.4E-18 110.3 5.6 53 58-110 9-63 (64)
34 3sjm_A Telomeric repeat-bindin 99.4 1.1E-13 3.7E-18 110.7 4.3 54 110-163 9-64 (64)
35 1x41_A Transcriptional adaptor 99.4 2.2E-13 7.4E-18 107.3 5.0 55 108-162 4-58 (60)
36 1w0t_A Telomeric repeat bindin 99.4 4.7E-13 1.6E-17 102.7 6.2 49 163-211 1-52 (53)
37 1w0t_A Telomeric repeat bindin 99.4 4E-13 1.4E-17 103.1 5.8 48 60-107 2-51 (53)
38 2elk_A SPCC24B10.08C protein; 99.4 6.9E-13 2.4E-17 103.9 6.0 48 59-106 8-56 (58)
39 1x41_A Transcriptional adaptor 99.3 8.4E-13 2.9E-17 103.9 6.1 51 160-210 4-55 (60)
40 2cu7_A KIAA1915 protein; nucle 99.3 4.9E-13 1.7E-17 108.9 3.6 58 106-164 3-60 (72)
41 1ign_A Protein (RAP1); RAP1,ye 99.3 2.1E-14 7.3E-19 140.8 -5.5 89 109-206 5-98 (246)
42 2yum_A ZZZ3 protein, zinc fing 99.3 6.1E-13 2.1E-17 109.0 4.0 60 107-166 3-67 (75)
43 2elk_A SPCC24B10.08C protein; 99.3 1.4E-12 4.7E-17 102.1 4.9 50 109-158 6-56 (58)
44 2yum_A ZZZ3 protein, zinc fing 99.3 1.6E-12 5.4E-17 106.5 5.0 55 159-213 3-63 (75)
45 2ltp_A Nuclear receptor corepr 98.9 4E-13 1.4E-17 114.0 0.0 57 156-212 8-64 (89)
46 2yus_A SWI/SNF-related matrix- 99.2 1.4E-11 4.7E-16 102.5 7.5 54 52-106 10-63 (79)
47 2ckx_A NGTRF1, telomere bindin 99.2 1.7E-11 5.8E-16 102.9 7.8 68 61-128 1-78 (83)
48 2aje_A Telomere repeat-binding 99.2 2E-11 6.8E-16 106.7 7.9 77 55-131 8-94 (105)
49 2ckx_A NGTRF1, telomere bindin 99.2 1.8E-11 6.2E-16 102.7 7.0 69 113-181 1-79 (83)
50 2aje_A Telomere repeat-binding 99.2 2.2E-11 7.6E-16 106.3 7.1 78 107-184 8-95 (105)
51 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.5E-11 5.2E-16 100.8 5.7 52 160-211 14-69 (73)
52 2cqr_A RSGI RUH-043, DNAJ homo 99.1 3.4E-11 1.2E-15 98.7 5.7 52 56-107 14-68 (73)
53 2yus_A SWI/SNF-related matrix- 99.1 4.6E-11 1.6E-15 99.3 4.5 48 161-208 15-62 (79)
54 2ltp_A Nuclear receptor corepr 98.7 1.2E-11 4E-16 105.0 0.0 55 105-160 9-63 (89)
55 1x58_A Hypothetical protein 49 99.0 2.9E-10 9.9E-15 90.0 6.0 50 162-211 6-58 (62)
56 2cjj_A Radialis; plant develop 99.0 5.4E-10 1.8E-14 95.6 7.5 59 163-223 7-69 (93)
57 2cjj_A Radialis; plant develop 98.9 1.4E-09 5E-14 93.0 4.7 47 60-106 8-57 (93)
58 1x58_A Hypothetical protein 49 98.8 5.5E-09 1.9E-13 82.7 5.7 49 58-107 6-57 (62)
59 2eqr_A N-COR1, N-COR, nuclear 98.7 1.5E-08 5.2E-13 79.9 6.2 48 163-210 11-58 (61)
60 3hm5_A DNA methyltransferase 1 98.7 2.4E-08 8.3E-13 85.3 7.3 65 148-216 18-87 (93)
61 2eqr_A N-COR1, N-COR, nuclear 98.7 2.8E-08 9.4E-13 78.4 6.5 50 56-106 8-57 (61)
62 2xag_B REST corepressor 1; ami 98.6 1.8E-08 6.2E-13 108.1 5.7 48 164-211 380-427 (482)
63 2iw5_B Protein corest, REST co 98.6 4.3E-08 1.5E-12 95.6 6.0 50 162-211 131-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.6 6.4E-08 2.2E-12 79.1 5.8 51 161-212 5-59 (72)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1E-07 3.5E-12 77.8 4.5 47 60-107 8-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.4 1.9E-07 6.5E-12 76.4 5.1 47 61-107 9-58 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.3 4.6E-07 1.6E-11 74.2 4.3 48 164-211 8-59 (73)
68 1fex_A TRF2-interacting telome 98.3 5.8E-07 2E-11 70.6 3.9 48 60-107 2-58 (59)
69 1fex_A TRF2-interacting telome 98.2 9.3E-07 3.2E-11 69.4 3.9 48 112-159 2-58 (59)
70 2iw5_B Protein corest, REST co 98.2 1.7E-06 5.7E-11 84.5 6.3 51 56-107 129-179 (235)
71 1ofc_X ISWI protein; nuclear p 98.1 1.1E-05 3.7E-10 82.4 9.9 149 61-215 111-279 (304)
72 4eef_G F-HB80.4, designed hema 97.9 2.4E-06 8.1E-11 69.7 1.7 43 61-103 21-66 (74)
73 2yqk_A Arginine-glutamic acid 97.9 2.3E-05 8E-10 62.0 6.6 50 159-208 4-54 (63)
74 3hm5_A DNA methyltransferase 1 97.8 1.2E-05 4.2E-10 68.6 4.1 56 98-158 20-80 (93)
75 4iej_A DNA methyltransferase 1 97.8 5.2E-05 1.8E-09 64.6 7.4 61 152-216 22-87 (93)
76 1ug2_A 2610100B20RIK gene prod 97.7 5E-05 1.7E-09 64.1 5.5 49 164-212 33-84 (95)
77 4eef_G F-HB80.4, designed hema 97.6 1.2E-05 4.1E-10 65.6 1.2 43 164-206 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.6 0.00012 4.2E-09 57.9 6.4 45 59-104 8-53 (63)
79 4b4c_A Chromodomain-helicase-D 97.6 0.00057 1.9E-08 65.4 12.3 43 59-101 6-52 (211)
80 2lr8_A CAsp8-associated protei 96.6 1.6E-05 5.4E-10 63.8 0.0 46 165-211 15-63 (70)
81 2crg_A Metastasis associated p 97.4 0.00023 7.7E-09 57.6 6.1 45 163-207 7-52 (70)
82 4a69_C Nuclear receptor corepr 97.3 0.00023 7.8E-09 60.8 5.5 45 164-208 43-87 (94)
83 2crg_A Metastasis associated p 97.3 0.00038 1.3E-08 56.3 6.1 46 58-104 6-52 (70)
84 2xag_B REST corepressor 1; ami 97.3 0.00025 8.4E-09 76.4 6.4 49 57-106 377-425 (482)
85 4a69_C Nuclear receptor corepr 97.2 0.0004 1.4E-08 59.3 5.6 45 59-104 42-86 (94)
86 2y9y_A Imitation switch protei 97.0 0.0028 9.5E-08 66.2 11.1 137 61-214 124-294 (374)
87 1ug2_A 2610100B20RIK gene prod 96.9 0.0041 1.4E-07 52.6 8.4 48 59-106 32-81 (95)
88 2ebi_A DNA binding protein GT- 96.7 0.0013 4.4E-08 54.6 4.0 50 163-212 3-66 (86)
89 2ebi_A DNA binding protein GT- 96.5 0.001 3.4E-08 55.3 2.5 48 59-106 3-63 (86)
90 2lr8_A CAsp8-associated protei 95.4 0.00049 1.7E-08 55.2 0.0 45 114-159 16-62 (70)
91 4iej_A DNA methyltransferase 1 95.1 0.024 8.2E-07 48.2 5.1 45 61-106 31-80 (93)
92 2xb0_X Chromo domain-containin 94.2 0.11 3.8E-06 52.1 8.2 47 60-106 3-53 (270)
93 1irz_A ARR10-B; helix-turn-hel 93.5 0.12 4.1E-06 41.1 5.5 49 57-105 4-56 (64)
94 1irz_A ARR10-B; helix-turn-hel 92.4 0.36 1.2E-05 38.3 6.9 48 161-208 4-56 (64)
95 1ofc_X ISWI protein; nuclear p 89.9 0.46 1.6E-05 48.4 6.5 49 164-212 110-159 (304)
96 2xb0_X Chromo domain-containin 87.7 0.32 1.1E-05 48.8 3.5 28 61-88 169-196 (270)
97 4b4c_A Chromodomain-helicase-D 87.0 0.86 3E-05 43.1 6.0 52 163-214 6-62 (211)
98 2y9y_A Imitation switch protei 71.4 3.1 0.00011 43.5 4.3 45 60-104 228-287 (374)
99 1k78_A Paired box protein PAX5 66.3 45 0.0015 28.8 10.3 80 60-142 30-118 (149)
100 2k27_A Paired box protein PAX- 65.0 55 0.0019 28.7 10.8 78 61-142 24-111 (159)
101 3hug_A RNA polymerase sigma fa 61.7 17 0.00057 29.3 6.1 47 170-217 40-86 (92)
102 2o8x_A Probable RNA polymerase 61.5 11 0.00039 28.1 4.8 45 167-213 16-60 (70)
103 1ku3_A Sigma factor SIGA; heli 56.3 15 0.00053 28.2 4.8 42 170-212 13-58 (73)
104 2p7v_B Sigma-70, RNA polymeras 51.8 16 0.00054 27.7 4.2 42 170-212 8-53 (68)
105 2cxy_A BAF250B subunit, HBAF25 44.2 54 0.0019 28.5 6.9 41 174-214 55-107 (125)
106 3mzy_A RNA polymerase sigma-H 42.5 47 0.0016 28.3 6.2 50 168-220 111-160 (164)
107 1x3u_A Transcriptional regulat 38.8 50 0.0017 25.2 5.3 42 167-211 17-58 (79)
108 1u78_A TC3 transposase, transp 38.7 1.7E+02 0.0058 24.3 9.5 78 61-142 5-87 (141)
109 1tty_A Sigma-A, RNA polymerase 36.7 41 0.0014 26.8 4.6 42 170-212 21-66 (87)
110 2li6_A SWI/SNF chromatin-remod 36.5 30 0.001 29.8 3.9 39 174-212 53-99 (116)
111 3cz6_A DNA-binding protein RAP 35.7 74 0.0025 29.5 6.5 35 97-131 98-141 (168)
112 3ulq_B Transcriptional regulat 35.2 61 0.0021 26.3 5.4 46 163-211 26-71 (90)
113 1or7_A Sigma-24, RNA polymeras 34.3 56 0.0019 28.9 5.6 40 173-213 146-185 (194)
114 3c57_A Two component transcrip 34.0 56 0.0019 26.5 5.1 44 166-212 27-70 (95)
115 1pdn_C Protein (PRD paired); p 33.4 64 0.0022 26.3 5.4 67 62-131 17-92 (128)
116 1je8_A Nitrate/nitrite respons 33.4 53 0.0018 25.9 4.7 43 166-211 21-63 (82)
117 1xsv_A Hypothetical UPF0122 pr 32.3 95 0.0033 26.2 6.4 43 170-213 28-70 (113)
118 2jpc_A SSRB; DNA binding prote 32.1 66 0.0022 23.2 4.7 38 172-211 3-40 (61)
119 2rq5_A Protein jumonji; develo 31.4 17 0.00058 32.0 1.5 57 70-129 46-114 (121)
120 1fse_A GERE; helix-turn-helix 31.4 63 0.0022 24.1 4.7 44 165-211 10-53 (74)
121 2q1z_A RPOE, ECF SIGE; ECF sig 31.4 42 0.0014 29.6 4.2 38 174-212 142-179 (184)
122 3i4p_A Transcriptional regulat 31.1 30 0.001 30.9 3.1 45 66-111 3-47 (162)
123 1u78_A TC3 transposase, transp 31.0 2.3E+02 0.0078 23.5 10.0 89 113-205 5-100 (141)
124 2lm1_A Lysine-specific demethy 29.8 67 0.0023 26.9 5.0 39 174-212 48-98 (107)
125 1rp3_A RNA polymerase sigma fa 29.3 80 0.0027 28.7 5.9 43 170-213 190-232 (239)
126 1k78_A Paired box protein PAX5 28.8 2.2E+02 0.0074 24.3 8.4 78 113-193 31-118 (149)
127 1tc3_C Protein (TC3 transposas 28.4 1.1E+02 0.0039 20.2 5.2 38 166-205 5-42 (51)
128 1p4w_A RCSB; solution structur 28.3 1.5E+02 0.0051 24.5 6.8 45 164-211 32-76 (99)
129 2jrz_A Histone demethylase jar 27.1 59 0.002 28.0 4.2 39 174-212 44-94 (117)
130 3i4p_A Transcriptional regulat 27.0 30 0.001 30.9 2.4 43 118-161 3-45 (162)
131 1kkx_A Transcription regulator 26.8 42 0.0014 29.3 3.2 40 174-213 52-99 (123)
132 2rnj_A Response regulator prot 26.3 66 0.0023 25.6 4.2 43 166-211 29-71 (91)
133 2eqy_A RBP2 like, jumonji, at 25.4 2.1E+02 0.0073 24.6 7.5 39 174-212 46-96 (122)
134 1s7o_A Hypothetical UPF0122 pr 24.5 1.5E+02 0.005 25.1 6.2 44 167-212 23-66 (113)
135 2p1m_A SKP1-like protein 1A; F 22.6 86 0.0029 28.2 4.6 36 83-125 118-153 (160)
136 2li6_A SWI/SNF chromatin-remod 22.2 38 0.0013 29.1 2.0 38 122-159 53-97 (116)
137 2k27_A Paired box protein PAX- 22.1 2.9E+02 0.01 23.8 8.0 76 114-193 25-111 (159)
138 3nkh_A Integrase; alpha-fold, 21.7 4.3E+02 0.015 23.8 9.4 157 57-214 20-232 (244)
139 2rq5_A Protein jumonji; develo 21.6 48 0.0016 29.0 2.5 56 122-180 46-113 (121)
140 2cuf_A FLJ21616 protein; homeo 21.4 3.1E+02 0.011 22.2 7.4 50 162-212 9-77 (95)
141 2jrz_A Histone demethylase jar 21.2 60 0.0021 27.9 3.1 39 69-107 43-92 (117)
142 3cz6_A DNA-binding protein RAP 21.1 1.5E+02 0.005 27.6 5.7 112 88-210 36-154 (168)
143 2lfw_A PHYR sigma-like domain; 20.9 55 0.0019 28.6 2.9 43 170-213 96-138 (157)
144 2dbb_A Putative HTH-type trans 20.2 1.4E+02 0.0047 25.8 5.4 42 171-213 10-52 (151)
145 2e1c_A Putative HTH-type trans 20.0 82 0.0028 28.5 3.9 44 66-110 27-70 (171)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=6.3e-43 Score=325.91 Aligned_cols=155 Identities=63% Similarity=1.201 Sum_probs=113.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhh
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVI 138 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~I 138 (535)
.+++||+|||++|+++|.+||..+|..||+.|++|+..||+.||.++|+|.+.+++||+|||++|+++|++||..+|..|
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~I 84 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVI 84 (159)
T ss_dssp --------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHH
Confidence 56789999999999999999988999999999999999999999999999999999999999999999999997789999
Q ss_pred cccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 139 AKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 139 Ak~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
|..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|..||++|||||+++|++||+.++++++
T Consensus 85 a~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 85 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998763
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=2.4e-36 Score=272.23 Aligned_cols=128 Identities=63% Similarity=1.222 Sum_probs=103.4
Q ss_pred hhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCCC
Q 009430 86 IAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKD 165 (535)
Q Consensus 86 IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~ 165 (535)
||+.||+|+..||+.||.++|+|.+.+|+||+|||++|+++|++||..+|..||..|++|++.||++||.++|+|.++++
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 79999999999999999999999999999999999999999999998789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 166 AWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 166 ~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
+||+|||.+|++++.+||++|..||++|||||+++|++||+.++++++
T Consensus 81 ~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred cCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999998763
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.96 E-value=1.3e-29 Score=220.58 Aligned_cols=105 Identities=67% Similarity=1.288 Sum_probs=99.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 009430 109 DLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAE 188 (535)
Q Consensus 109 ~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~ 188 (535)
++.+|+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 36789999999999999999999778999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 189 IAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 189 IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
||++|||||+++|++||+.++++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHcCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999998764
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.96 E-value=3.2e-29 Score=219.36 Aligned_cols=103 Identities=38% Similarity=0.734 Sum_probs=99.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhh
Q 009430 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAK 191 (535)
Q Consensus 112 Kg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~ 191 (535)
||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||.+|++++.+||++|..||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999879999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHhHHHHHHHHHHHhHHH
Q 009430 192 VLPGRTDNSIKNHWNSSLKKKLD 214 (535)
Q Consensus 192 ~lpgRT~~qcknRw~~llkkk~~ 214 (535)
+|||||+++|++||+.++++...
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHH
Confidence 99999999999999999988653
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.95 E-value=1.2e-28 Score=223.16 Aligned_cols=130 Identities=37% Similarity=0.662 Sum_probs=108.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhh
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVI 138 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~I 138 (535)
.+|+||+|||++|+++|..||..+|..||.+||+|+..||++||.++|+|.+++|+||+|||++|+++|.+|| .+|..|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHH
Confidence 3689999999999999999998999999999999999999999999999999999999999999999999999 789999
Q ss_pred cccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhC
Q 009430 139 AKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVL 193 (535)
Q Consensus 139 Ak~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~l 193 (535)
|+.|+||++.+|++||+++|++.+..+.|+.+- +........+|..|++.|
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKAADVPKKL 130 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhhhhcchhc
Confidence 999999999999999999999999999988742 111122345688887765
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.95 E-value=1.6e-28 Score=220.94 Aligned_cols=105 Identities=40% Similarity=0.726 Sum_probs=100.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 009430 107 NPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKW 186 (535)
Q Consensus 107 ~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW 186 (535)
.+..++|+||+|||++|+++|++||. +|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 45678999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 187 AEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 187 ~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
..||++|||||+++|++||+.++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998874
No 7
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.95 E-value=1.7e-28 Score=222.08 Aligned_cols=103 Identities=52% Similarity=0.965 Sum_probs=100.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhh
Q 009430 112 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAK 191 (535)
Q Consensus 112 Kg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~ 191 (535)
||+||+|||++|+++|.+||..+|..||..||+|++.||++||.++|+|.+++++||+|||++|+++|.+||++|..||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 78999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHhHHHHHHHHHHHhHHH
Q 009430 192 VLPGRTDNSIKNHWNSSLKKKLD 214 (535)
Q Consensus 192 ~lpgRT~~qcknRw~~llkkk~~ 214 (535)
+|+|||+++|++||+.++++++.
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998875
No 8
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.95 E-value=1.4e-27 Score=207.65 Aligned_cols=102 Identities=36% Similarity=0.738 Sum_probs=97.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhh
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVI 138 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~I 138 (535)
.+++||+|||++|+++|..||..+|..||++|++|+..||+.||.++|+|.+++++||+|||++|+++|++|| .+|..|
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~I 81 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEI 81 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHH
Confidence 4689999999999999999998899999999999999999999999999999999999999999999999999 689999
Q ss_pred cccccccchhhhHhhhhhhcCCC
Q 009430 139 AKSLPGRIGKQCRERWHNHLNPD 161 (535)
Q Consensus 139 Ak~LpgRt~kqcr~Rw~n~L~p~ 161 (535)
|+.||||+..+|++||+.+++..
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999988754
No 9
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.94 E-value=1.1e-27 Score=209.59 Aligned_cols=100 Identities=34% Similarity=0.654 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhc
Q 009430 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIA 139 (535)
Q Consensus 60 kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IA 139 (535)
+++||+|||++|+++|..||..+|..||..|++|+..||+.||.++|+|.+++|+||+|||++|+.+|.+|| .+|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC-cCHHHHH
Confidence 578999999999999999998899999999999999999999999999999999999999999999999999 6899999
Q ss_pred ccccccchhhhHhhhhhhcCC
Q 009430 140 KSLPGRIGKQCRERWHNHLNP 160 (535)
Q Consensus 140 k~LpgRt~kqcr~Rw~n~L~p 160 (535)
+.||||+..+|++||..+++.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987754
No 10
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.94 E-value=5.7e-27 Score=210.99 Aligned_cols=121 Identities=31% Similarity=0.610 Sum_probs=100.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHH
Q 009430 40 SSPATTSPTHRRTTGPIRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEE 119 (535)
Q Consensus 40 ~~p~~~~~~~~r~~~~~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EE 119 (535)
.+++.+|..+..........+++||+|||++|+++|.+||..+|..||.+|++|+..||+.||.++|+|.+++++||+||
T Consensus 7 ~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE 86 (128)
T 1h8a_C 7 NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86 (128)
T ss_dssp ---------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHH
T ss_pred CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHH
Confidence 35566777777666666678899999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCC
Q 009430 120 DDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161 (535)
Q Consensus 120 D~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ 161 (535)
|++|+++|++|| .+|..||+.||||+..+|++||+.+++..
T Consensus 87 d~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 87 DRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999 68999999999999999999999988654
No 11
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.94 E-value=9.5e-27 Score=209.38 Aligned_cols=101 Identities=41% Similarity=0.819 Sum_probs=96.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCchh
Q 009430 57 RRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWS 136 (535)
Q Consensus 57 rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~ 136 (535)
...+++||+|||++|+++|..||. +|..||+.|++|+..||++||.++|+|.+++++||+|||++|+++|++|| .+|.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~ 85 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG-RQWA 85 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC-cCHH
Confidence 456789999999999999999987 89999999999999999999999999999999999999999999999999 7899
Q ss_pred hhcccccccchhhhHhhhhhhcC
Q 009430 137 VIAKSLPGRIGKQCRERWHNHLN 159 (535)
Q Consensus 137 ~IAk~LpgRt~kqcr~Rw~n~L~ 159 (535)
.||+.|+||+..+|++||..+++
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 12
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.91 E-value=1.4e-24 Score=202.14 Aligned_cols=120 Identities=31% Similarity=0.600 Sum_probs=104.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHH
Q 009430 41 SPATTSPTHRRTTGPIRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEED 120 (535)
Q Consensus 41 ~p~~~~~~~~r~~~~~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED 120 (535)
+++.+|-.+..........+++||+|||++|+++|.+||..+|..||.+|++|+..||+.||.++|+|.+++++||+|||
T Consensus 39 Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd 118 (159)
T 1h89_C 39 RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118 (159)
T ss_dssp ----CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHH
T ss_pred CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHH
Confidence 44445544444444444568999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCC
Q 009430 121 DKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161 (535)
Q Consensus 121 ~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ 161 (535)
.+|++++++|| .+|..||+.||||+..+|++||+.+++..
T Consensus 119 ~~L~~~~~~~g-~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 119 RIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999 78999999999999999999999988654
No 13
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.74 E-value=7.3e-19 Score=172.21 Aligned_cols=131 Identities=19% Similarity=0.269 Sum_probs=111.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCC-----hhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKS-----WKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPT 133 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~n-----W~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~ 133 (535)
.+++||+|||++|+++|.+||..+ |.+||++|||||..||+.||+.+|.+.+... |+.+||..|+.... |
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~--G-- 81 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD--G-- 81 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--S--
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--C--
Confidence 467899999999999999997753 9999999999999999999999999998866 99999998886665 5
Q ss_pred chhhhcccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHH-h------------------------------
Q 009430 134 KWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRI-H------------------------------ 182 (535)
Q Consensus 134 ~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~-~------------------------------ 182 (535)
+|.+|+ .||+ .-+..||.+||-.|+..+.+ +
T Consensus 82 n~ikis-~lp~-----------------siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 143 (246)
T 1ign_A 82 NLIKTK-VLPP-----------------SIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNM 143 (246)
T ss_dssp CBCEES-SCCC-----------------CSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC--------------
T ss_pred Cceeee-ccCc-----------------cccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhc
Confidence 499998 5644 23567999999999998876 1
Q ss_pred --CC-------------------------chhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 183 --GN-------------------------KWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 183 --G~-------------------------kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
|. .|..||+.+|+||.+++|+||+.+|+..
T Consensus 144 ~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 144 TMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp -----------------CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccCccccccCCcchhhhccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999888653
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-18 Score=140.42 Aligned_cols=66 Identities=36% Similarity=0.707 Sum_probs=63.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCCCCCCHHHH
Q 009430 107 NPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEE 172 (535)
Q Consensus 107 ~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd 172 (535)
.+.+++++||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 467889999999999999999999988999999999999999999999999999999999999987
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.2e-18 Score=137.58 Aligned_cols=63 Identities=32% Similarity=0.679 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHH
Q 009430 58 RAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEED 120 (535)
Q Consensus 58 r~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED 120 (535)
..+++||+|||++|+++|.+||..+|..||.+|++|+..||+.||.++|+|.+++++||+|||
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 457889999999999999999888999999999999999999999999999999999999997
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.58 E-value=8.9e-16 Score=125.96 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=47.3
Q ss_pred hhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHH
Q 009430 149 QCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSL 209 (535)
Q Consensus 149 qcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~ll 209 (535)
.+.-||.++|+|++++++||+|||++|++++.+||++|..||+.| |||+++||+||+.+.
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999 999999999999654
No 17
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.56 E-value=1.4e-15 Score=135.83 Aligned_cols=83 Identities=14% Similarity=0.335 Sum_probs=77.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccc----cccchhhhHhhhhhhcC-----CCCCCC-CCCHHHHHHH
Q 009430 106 LNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSL----PGRIGKQCRERWHNHLN-----PDIKKD-AWTLEEELAL 175 (535)
Q Consensus 106 L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~L----pgRt~kqcr~Rw~n~L~-----p~ik~~-~WT~EEd~~L 175 (535)
+.+...+++||+|||+.|+++|++||..+|..|++.+ ++|++.+|++||+++++ |.++++ +|+++|+.+|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 4566788999999999999999999977999999884 89999999999999997 999998 9999999999
Q ss_pred HHHHHHhCCchhh
Q 009430 176 MNAHRIHGNKWAE 188 (535)
Q Consensus 176 i~lv~~~G~kW~~ 188 (535)
+.++..+|++|..
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.56 E-value=1.3e-14 Score=129.75 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhc----CCCCCHHHHHHHhhhcc-----CCCCCCCCCCHHH-HHH
Q 009430 53 TGPIRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEF----FPDRSEVQCLHRWQKVL-----NPDLVKGPWTQEE-DDK 122 (535)
Q Consensus 53 ~~~~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~----lp~RT~~qCr~Rw~~~L-----~p~~kKg~WT~EE-D~~ 122 (535)
....++.+++||+|||+.|+++|.+||.++|..|++. |++||..+|++||++++ +|..+++.|+++| +++
T Consensus 24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 3455678899999999999999999999999999986 48999999999999999 7999999999999 899
Q ss_pred HHHHHHHhCC
Q 009430 123 ITELVSKYGP 132 (535)
Q Consensus 123 Ll~lV~kyG~ 132 (535)
|+.+...||.
T Consensus 104 v~~~h~~~g~ 113 (122)
T 2roh_A 104 VLAAQAYWSV 113 (122)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhh
Confidence 9999999994
No 19
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.55 E-value=4.1e-15 Score=132.90 Aligned_cols=85 Identities=19% Similarity=0.333 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhc----CCCCCHHHHHHHhhhccC-----CCCCCC-CCCHHHHH
Q 009430 52 TTGPIRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEF----FPDRSEVQCLHRWQKVLN-----PDLVKG-PWTQEEDD 121 (535)
Q Consensus 52 ~~~~~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~----lp~RT~~qCr~Rw~~~L~-----p~~kKg-~WT~EED~ 121 (535)
.....++.+++||+|||+.|+++|.+||.++|..|++. |++||..+|++||+++++ |..+++ +|+++|+.
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~ 88 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence 33455778899999999999999999999899999998 489999999999999997 999999 99999999
Q ss_pred HHHHHHHHhCCCchhh
Q 009430 122 KITELVSKYGPTKWSV 137 (535)
Q Consensus 122 ~Ll~lV~kyG~~~W~~ 137 (535)
+|+.+...+| ++|.+
T Consensus 89 rv~~~h~~~g-n~~~~ 103 (121)
T 2juh_A 89 RVLAAHAYWS-QQQGK 103 (121)
T ss_dssp HHHHHHHHHH-HHHCC
T ss_pred HHHHHHHHHc-cchhc
Confidence 9999999999 77876
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=6.9e-15 Score=115.60 Aligned_cols=57 Identities=32% Similarity=0.675 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCC
Q 009430 107 NPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIK 163 (535)
Q Consensus 107 ~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik 163 (535)
+|.+++++||+|||++|+++|++||..+|..||..|++|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 467889999999999999999999977999999999999999999999999999875
No 21
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.51 E-value=1.6e-14 Score=129.21 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccc----cccchhhhHhhhhhhc-----CCCCCCCCCCHHH-HHHHHHH
Q 009430 109 DLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSL----PGRIGKQCRERWHNHL-----NPDIKKDAWTLEE-ELALMNA 178 (535)
Q Consensus 109 ~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~L----pgRt~kqcr~Rw~n~L-----~p~ik~~~WT~EE-d~~Li~l 178 (535)
...+++||+|||+.|+++|++||..+|..|++.+ ++|++.+|++||++++ +|.++++.|+++| +.+|+.+
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~ 107 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAA 107 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHH
Confidence 4568899999999999999999988999999864 8999999999999999 8999999999999 7999999
Q ss_pred HHHhCCc
Q 009430 179 HRIHGNK 185 (535)
Q Consensus 179 v~~~G~k 185 (535)
+..+|++
T Consensus 108 h~~~g~~ 114 (122)
T 2roh_A 108 QAYWSVD 114 (122)
T ss_dssp HHHHHSS
T ss_pred HHHHhhH
Confidence 9999975
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.51 E-value=1.3e-14 Score=110.96 Aligned_cols=52 Identities=75% Similarity=1.473 Sum_probs=49.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCC
Q 009430 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161 (535)
Q Consensus 110 ~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ 161 (535)
+++++||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4689999999999999999999778999999999999999999999999884
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.50 E-value=2.4e-14 Score=109.34 Aligned_cols=51 Identities=41% Similarity=0.775 Sum_probs=48.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCC
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPD 109 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~ 109 (535)
.+++||+|||++|+++|.+||..+|..||+.|++|+..||+.||.++|+|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 467899999999999999998889999999999999999999999999974
No 24
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=3.3e-14 Score=115.86 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=54.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHHH
Q 009430 158 LNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLD 214 (535)
Q Consensus 158 L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~~ 214 (535)
.+|.+++++||+|||++|++++.+||++|..||.+|+|||++||++||+.++++++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999999999999999999988764
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.49 E-value=3.3e-14 Score=114.94 Aligned_cols=61 Identities=26% Similarity=0.512 Sum_probs=56.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCC--CCCHHHHHHHhhhccCCCCCCCCCC
Q 009430 56 IRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFP--DRSEVQCLHRWQKVLNPDLVKGPWT 116 (535)
Q Consensus 56 ~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp--~RT~~qCr~Rw~~~L~p~~kKg~WT 116 (535)
.++.+++||+|||++|+++|.+||.++|..||.+|+ +|+..||+.||.++|+|.+.++..+
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 356788999999999999999998889999999999 9999999999999999999988654
No 26
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.48 E-value=3e-14 Score=108.74 Aligned_cols=51 Identities=53% Similarity=1.017 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCC
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPD 109 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~ 109 (535)
.+++||+|||++|+++|.+||..+|..||++|++|+..||+.||.++|+|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 367899999999999999998889999999999999999999999999974
No 27
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.48 E-value=1.9e-14 Score=109.81 Aligned_cols=52 Identities=48% Similarity=0.945 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCC
Q 009430 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161 (535)
Q Consensus 110 ~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ 161 (535)
+++++||+|||++|+++|++||..+|..||+.|++|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 3689999999999999999999769999999999999999999999999884
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.2e-14 Score=113.97 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=54.7
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHHH
Q 009430 157 HLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLD 214 (535)
Q Consensus 157 ~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~~ 214 (535)
+|+|.+++++||.|||++|++++..+|.+|..||. |+|||++||++||+.+|++.+.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhc
Confidence 68999999999999999999999999999999999 8899999999999999998875
No 29
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=5.4e-14 Score=110.48 Aligned_cols=54 Identities=43% Similarity=0.768 Sum_probs=50.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCC
Q 009430 58 RAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLV 111 (535)
Q Consensus 58 r~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~k 111 (535)
..+++||+|||++|+++|.+||..+|..||++|++|+..||+.||.++|+|.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 457889999999999999999878999999999999999999999999998764
No 30
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.46 E-value=3.7e-14 Score=114.58 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=57.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhccccc--ccchhhhHhhhhhhcCCCCCCCCCC
Q 009430 106 LNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLP--GRIGKQCRERWHNHLNPDIKKDAWT 168 (535)
Q Consensus 106 L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~Lp--gRt~kqcr~Rw~n~L~p~ik~~~WT 168 (535)
..+...+++||+|||++|+++|++||..+|..||..|+ +|++.||++||.++|++.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 45667889999999999999999999889999999999 9999999999999999999887653
No 31
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.44 E-value=5.5e-14 Score=115.31 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=48.1
Q ss_pred HHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCC
Q 009430 97 QCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIK 163 (535)
Q Consensus 97 qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik 163 (535)
.+.-||.++|+|++++++||+|||++|++++++|| .+|..||+.| ||++.+|++||+. |.....
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 45678999999999999999999999999999999 5699999999 9999999999975 544443
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-14 Score=114.56 Aligned_cols=59 Identities=29% Similarity=0.525 Sum_probs=54.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCCC
Q 009430 105 VLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKD 165 (535)
Q Consensus 105 ~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~ 165 (535)
+|+|.+++++||+|||++|+++|++|| .+|..||+ |++|+++||++||.++|++.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 689999999999999999999999999 59999999 889999999999999998876654
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.42 E-value=1.3e-13 Score=110.29 Aligned_cols=53 Identities=26% Similarity=0.584 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCC--CCCHHHHHHHhhhccCCCC
Q 009430 58 RAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFP--DRSEVQCLHRWQKVLNPDL 110 (535)
Q Consensus 58 r~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp--~RT~~qCr~Rw~~~L~p~~ 110 (535)
..+++||+|||++|+++|.+||.++|..||+.++ +||..||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 3567899999999999999999889999999876 9999999999999988765
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.41 E-value=1.1e-13 Score=110.73 Aligned_cols=54 Identities=30% Similarity=0.598 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCchhhhccccc--ccchhhhHhhhhhhcCCCCC
Q 009430 110 LVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLP--GRIGKQCRERWHNHLNPDIK 163 (535)
Q Consensus 110 ~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~Lp--gRt~kqcr~Rw~n~L~p~ik 163 (535)
.++++||+|||++|+++|++||..+|..||+.++ +|++.||++||+++++++++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4688999999999999999999889999999865 99999999999999988764
No 35
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=2.2e-13 Score=107.31 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=51.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCC
Q 009430 108 PDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDI 162 (535)
Q Consensus 108 p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~i 162 (535)
+.+.+++||+|||++|+++|++||..+|..||+.|++|+++||++||.++|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 5678899999999999999999998899999999999999999999999997653
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.38 E-value=4.7e-13 Score=102.72 Aligned_cols=49 Identities=31% Similarity=0.547 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC--CCCHhHHHHHHHHHHHh
Q 009430 163 KKDAWTLEEELALMNAHRIHG-NKWAEIAKVLP--GRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 163 k~~~WT~EEd~~Li~lv~~~G-~kW~~IA~~lp--gRT~~qcknRw~~llkk 211 (535)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999875
No 37
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.38 E-value=4e-13 Score=103.09 Aligned_cols=48 Identities=29% Similarity=0.630 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCChhhhhhcCC--CCCHHHHHHHhhhccC
Q 009430 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFP--DRSEVQCLHRWQKVLN 107 (535)
Q Consensus 60 kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp--~RT~~qCr~Rw~~~L~ 107 (535)
+++||+|||++|+++|.+||.++|..||..|+ +||..||++||.+++.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 67899999999999999998889999999999 9999999999999875
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.36 E-value=6.9e-13 Score=103.87 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCC-CCCHHHHHHHhhhcc
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 106 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp-~RT~~qCr~Rw~~~L 106 (535)
.+++||+|||++|+++|.+||..+|..||++|+ +||..||+.||.+++
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 367899999999999999998889999999999 999999999999875
No 39
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=8.4e-13 Score=103.94 Aligned_cols=51 Identities=24% Similarity=0.469 Sum_probs=48.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHhHHHHHHHHHHH
Q 009430 160 PDIKKDAWTLEEELALMNAHRIHG-NKWAEIAKVLPGRTDNSIKNHWNSSLK 210 (535)
Q Consensus 160 p~ik~~~WT~EEd~~Li~lv~~~G-~kW~~IA~~lpgRT~~qcknRw~~llk 210 (535)
+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+.+|.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 568899999999999999999999 799999999999999999999998775
No 40
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.33 E-value=4.9e-13 Score=108.94 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=53.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCC
Q 009430 106 LNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKK 164 (535)
Q Consensus 106 L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~ 164 (535)
.+|.+++++||+|||++|+++|++|| .+|..||+.|++|+..||++||+++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999 59999999999999999999999998766654
No 41
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.32 E-value=2.1e-14 Score=140.78 Aligned_cols=89 Identities=26% Similarity=0.418 Sum_probs=76.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCc-----hhhhcccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhC
Q 009430 109 DLVKGPWTQEEDDKITELVSKYGPTK-----WSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHG 183 (535)
Q Consensus 109 ~~kKg~WT~EED~~Ll~lV~kyG~~~-----W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G 183 (535)
...+++||+|||++|+++|++||..+ |..||+.||||++.|||+||+.+|.+.+... |+.+||..|+..+. |
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~--G 81 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD--G 81 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--S
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--C
Confidence 46788999999999999999998532 9999999999999999999999999999855 99999999888776 6
Q ss_pred CchhhHhhhCCCCCHhHHHHHHH
Q 009430 184 NKWAEIAKVLPGRTDNSIKNHWN 206 (535)
Q Consensus 184 ~kW~~IA~~lpgRT~~qcknRw~ 206 (535)
+ |..|+ .||+ .||++|.
T Consensus 82 n-~ikis-~lp~----siK~rft 98 (246)
T 1ign_A 82 N-LIKTK-VLPP----SIKRKFS 98 (246)
T ss_dssp C-BCEES-SCCC----CSCCCCC
T ss_pred C-ceeee-ccCc----cccCccc
Confidence 6 99999 7777 5566666
No 42
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.1e-13 Score=108.98 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=54.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CchhhhcccccccchhhhHhhhhhhcCCCCCCCC
Q 009430 107 NPDLVKGPWTQEEDDKITELVSKYGP-----TKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDA 166 (535)
Q Consensus 107 ~p~~kKg~WT~EED~~Ll~lV~kyG~-----~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~ 166 (535)
.|.+.+++||+|||++|+++|++||. .+|..||..|++|+..||++||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999996 7899999999999999999999999988776654
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.31 E-value=1.4e-12 Score=102.13 Aligned_cols=50 Identities=18% Similarity=0.434 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchhhhccccc-ccchhhhHhhhhhhc
Q 009430 109 DLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 158 (535)
Q Consensus 109 ~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~Lp-gRt~kqcr~Rw~n~L 158 (535)
.+.+++||+|||++|+++|++||..+|..||+.|+ +|+++||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999999889999999999 999999999999875
No 44
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=106.52 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 159 NPDIKKDAWTLEEELALMNAHRIHG------NKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 159 ~p~ik~~~WT~EEd~~Li~lv~~~G------~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
+|.+.+++||+|||++|++++.+|| ++|..||.+|+|||+.||++||+.+|.+.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999 789999999999999999999988887754
No 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.93 E-value=4e-13 Score=114.05 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=53.2
Q ss_pred hhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 156 NHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 156 n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
..+.+.+.+++||+|||++|++++.+||++|..||.+|+|||++||++||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 346788999999999999999999999999999999999999999999999988764
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=102.49 Aligned_cols=54 Identities=22% Similarity=0.474 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhcc
Q 009430 52 TTGPIRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL 106 (535)
Q Consensus 52 ~~~~~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L 106 (535)
..+.....+++||+|||++|+++|.+|| .+|..||++|++||..||+.||.+++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3344556778999999999999999998 88999999999999999999999983
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.23 E-value=1.7e-11 Score=102.87 Aligned_cols=68 Identities=21% Similarity=0.376 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChhhhhhc----CCCCCHHHHHHHhhhcc-----CCCCCCC-CCCHHHHHHHHHHHH
Q 009430 61 GGWTPEEDETLRNAVSTFKGKSWKKIAEF----FPDRSEVQCLHRWQKVL-----NPDLVKG-PWTQEEDDKITELVS 128 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~~nW~~IAk~----lp~RT~~qCr~Rw~~~L-----~p~~kKg-~WT~EED~~Ll~lV~ 128 (535)
++||+|||++|+++|.+||.++|..|++. |++||..+|++||++++ .|..++| +..++..++++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999995 89999999999999987 5665555 677777787877764
No 48
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.21 E-value=2e-11 Score=106.67 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=65.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcC----CCCCHHHHHHHhhhcc-----CCCCCCCCCCHHHHHH-HH
Q 009430 55 PIRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFF----PDRSEVQCLHRWQKVL-----NPDLVKGPWTQEEDDK-IT 124 (535)
Q Consensus 55 ~~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~l----p~RT~~qCr~Rw~~~L-----~p~~kKg~WT~EED~~-Ll 124 (535)
..++.+++||+|||++|+++|.+||.++|..|++.+ ++||..+|++||++++ .|..++|.-++.|--. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 346778899999999999999999999999999965 8999999999999998 6888899888877654 67
Q ss_pred HHHHHhC
Q 009430 125 ELVSKYG 131 (535)
Q Consensus 125 ~lV~kyG 131 (535)
++...++
T Consensus 88 ~~~~~~~ 94 (105)
T 2aje_A 88 NAHGYWT 94 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.21 E-value=1.8e-11 Score=102.69 Aligned_cols=69 Identities=16% Similarity=0.366 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhccc----ccccchhhhHhhhhhhc-----CCCCCC-CCCCHHHHHHHHHHHHH
Q 009430 113 GPWTQEEDDKITELVSKYGPTKWSVIAKS----LPGRIGKQCRERWHNHL-----NPDIKK-DAWTLEEELALMNAHRI 181 (535)
Q Consensus 113 g~WT~EED~~Ll~lV~kyG~~~W~~IAk~----LpgRt~kqcr~Rw~n~L-----~p~ik~-~~WT~EEd~~Li~lv~~ 181 (535)
++||+|||+.|+++|++||..+|..|++. |++|++.+|++||++++ .|.+++ .+...+...+++.|++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998799999985 89999999999999988 676555 46777777889988865
No 50
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.19 E-value=2.2e-11 Score=106.35 Aligned_cols=78 Identities=18% Similarity=0.382 Sum_probs=66.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccc----cccchhhhHhhhhhhc-----CCCCCCCCCCHHHHHH-HH
Q 009430 107 NPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSL----PGRIGKQCRERWHNHL-----NPDIKKDAWTLEEELA-LM 176 (535)
Q Consensus 107 ~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~L----pgRt~kqcr~Rw~n~L-----~p~ik~~~WT~EEd~~-Li 176 (535)
....++++||+|||+.|+++|++||..+|..|++.+ ++|+..+|++||++++ .|.++++.-++.|-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 345778999999999999999999987999999866 7999999999999998 6889888877777655 88
Q ss_pred HHHHHhCC
Q 009430 177 NAHRIHGN 184 (535)
Q Consensus 177 ~lv~~~G~ 184 (535)
+|++.+|+
T Consensus 88 ~~~~~~~~ 95 (105)
T 2aje_A 88 NAHGYWTQ 95 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=1.5e-11 Score=100.78 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=47.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 160 PDIKKDAWTLEEELALMNAHRIHG----NKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 160 p~ik~~~WT~EEd~~Li~lv~~~G----~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
+.+.+++||.|||.+|++++..|| ++|..||.+|||||.++|++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456788999999999999999999 6899999999999999999999988763
No 52
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.15 E-value=3.4e-11 Score=98.71 Aligned_cols=52 Identities=27% Similarity=0.638 Sum_probs=46.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhc---CCChhhhhhcCCCCCHHHHHHHhhhccC
Q 009430 56 IRRAKGGWTPEEDETLRNAVSTFK---GKSWKKIAEFFPDRSEVQCLHRWQKVLN 107 (535)
Q Consensus 56 ~rr~kgkWT~EEDe~L~klV~~yg---~~nW~~IAk~lp~RT~~qCr~Rw~~~L~ 107 (535)
....++.||+|||++|+++|..|+ ..+|..||++||+||..||+.||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 345678899999999999999997 3579999999999999999999998765
No 53
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.10 E-value=4.6e-11 Score=99.31 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHH
Q 009430 161 DIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSS 208 (535)
Q Consensus 161 ~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~l 208 (535)
...+++||+|||.+|++++.+||++|..||.+|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999754
No 54
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.67 E-value=1.2e-11 Score=105.00 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=50.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCC
Q 009430 105 VLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNP 160 (535)
Q Consensus 105 ~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p 160 (535)
.+.|.+.+++||+|||++|+++|.+|| .+|..||..|++|+..||++||+++|+.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 456788999999999999999999999 5899999999999999999999998864
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.03 E-value=2.9e-10 Score=90.02 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhHh---hhCCCCCHhHHHHHHHHHHHh
Q 009430 162 IKKDAWTLEEELALMNAHRIHGNKWAEIA---KVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 162 ik~~~WT~EEd~~Li~lv~~~G~kW~~IA---~~lpgRT~~qcknRw~~llkk 211 (535)
..+.+||+||++.|+++|++||.+|..|+ ..+++||..+|++||+.|.++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 577999999999999998875
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.01 E-value=5.4e-10 Score=95.64 Aligned_cols=59 Identities=25% Similarity=0.572 Sum_probs=49.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHhHHHHHHHHHHHhHHHHHhhcCCCC
Q 009430 163 KKDAWTLEEELALMNAHRIHG----NKWAEIAKVLPGRTDNSIKNHWNSSLKKKLDFYLATGKLP 223 (535)
Q Consensus 163 k~~~WT~EEd~~Li~lv~~~G----~kW~~IA~~lpgRT~~qcknRw~~llkkk~~~~~~~~~~p 223 (535)
..++||.|||.+|++++..|| ++|..||.+|||||.++|++||+.++++... ...+..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~--iesg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY--IESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH--HHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhcCCCC
Confidence 467999999999999999996 6899999999999999999999998877532 3445444
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.86 E-value=1.4e-09 Score=92.97 Aligned_cols=47 Identities=13% Similarity=0.449 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhc---CCChhhhhhcCCCCCHHHHHHHhhhcc
Q 009430 60 KGGWTPEEDETLRNAVSTFK---GKSWKKIAEFFPDRSEVQCLHRWQKVL 106 (535)
Q Consensus 60 kgkWT~EEDe~L~klV~~yg---~~nW~~IAk~lp~RT~~qCr~Rw~~~L 106 (535)
++.||+|||++|++++..|+ +.+|..||++||+||..+|+.||..++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45799999999999999997 467999999999999999999999864
No 58
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.80 E-value=5.5e-09 Score=82.71 Aligned_cols=49 Identities=24% Similarity=0.474 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCChhhhh---hcCCCCCHHHHHHHhhhccC
Q 009430 58 RAKGGWTPEEDETLRNAVSTFKGKSWKKIA---EFFPDRSEVQCLHRWQKVLN 107 (535)
Q Consensus 58 r~kgkWT~EEDe~L~klV~~yg~~nW~~IA---k~lp~RT~~qCr~Rw~~~L~ 107 (535)
+.+.+||+|||+.|+++|.+||. +|..|+ .+|++||..++++||+++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 45678999999999999999987 899999 57889999999999999765
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.5e-08 Score=79.92 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHH
Q 009430 163 KKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLK 210 (535)
Q Consensus 163 k~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llk 210 (535)
..++||+||++++++++.+||.+|..||.+||+||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.71 E-value=2.4e-08 Score=85.27 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=58.5
Q ss_pred hhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhC-----CCCCHhHHHHHHHHHHHhHHHHH
Q 009430 148 KQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVL-----PGRTDNSIKNHWNSSLKKKLDFY 216 (535)
Q Consensus 148 kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~l-----pgRT~~qcknRw~~llkkk~~~~ 216 (535)
.=+.++|.++|.+ .+||.||+..|++|+.+||.+|..|+..+ ++||..+||+||..+.++.+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3467899999976 89999999999999999999999999999 58999999999999999877643
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=2.8e-08 Score=78.42 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=44.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhcc
Q 009430 56 IRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL 106 (535)
Q Consensus 56 ~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L 106 (535)
.|.....||+||++++.+++..|| .+|..||.+||+||..||..+|....
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 345667899999999999999996 68999999999999999999987643
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.64 E-value=1.8e-08 Score=108.12 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 164 KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 164 ~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
...||.||..++++++.+||.+|..||..|++||..||+++|....++
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999754443
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.58 E-value=4.3e-08 Score=95.59 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 162 IKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 162 ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
.....||+||..++++++.+||++|..||+.|++||..||+++|+..+++
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999977765
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.57 E-value=6.4e-08 Score=79.05 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 161 DIKKDAWTLEEELALMNAHRIHG----NKWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 161 ~ik~~~WT~EEd~~Li~lv~~~G----~kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
....+.||.||+.+|.+++++|+ ++|..||.+| |||..+|++||+.|++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 34568999999999999999997 6799999998 999999999999987764
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=1e-07 Score=77.85 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcC---CChhhhhhcCCCCCHHHHHHHhhhccC
Q 009430 60 KGGWTPEEDETLRNAVSTFKG---KSWKKIAEFFPDRSEVQCLHRWQKVLN 107 (535)
Q Consensus 60 kgkWT~EEDe~L~klV~~yg~---~nW~~IAk~lp~RT~~qCr~Rw~~~L~ 107 (535)
.+.||.|||++|.+++..|+. .+|..||++| +||..+|+.||+.+..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 457999999999999999973 5699999998 8999999999998754
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=1.9e-07 Score=76.40 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhcC---CChhhhhhcCCCCCHHHHHHHhhhccC
Q 009430 61 GGWTPEEDETLRNAVSTFKG---KSWKKIAEFFPDRSEVQCLHRWQKVLN 107 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~---~nW~~IAk~lp~RT~~qCr~Rw~~~L~ 107 (535)
..||.||+++|.+++..|+. .+|..||..||+||..+|+.||..++.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 35999999999999999964 469999999999999999999998765
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.30 E-value=4.6e-07 Score=74.15 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 164 KDAWTLEEELALMNAHRIHGN----KWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 164 ~~~WT~EEd~~Li~lv~~~G~----kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
...||.+|+.+|.+++..|+. +|..||.+|+|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999984 699999999999999999999987553
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.25 E-value=5.8e-07 Score=70.62 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------cCCChhhhhh-cCCCCCHHHHHHHhhhccC
Q 009430 60 KGGWTPEEDETLRNAVSTF--------KGKSWKKIAE-FFPDRSEVQCLHRWQKVLN 107 (535)
Q Consensus 60 kgkWT~EEDe~L~klV~~y--------g~~nW~~IAk-~lp~RT~~qCr~Rw~~~L~ 107 (535)
+.+||+|||+.|.+.|.+| |..-|+.+|+ .++++|..+|++||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4679999999999999999 4445999999 8999999999999999875
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.19 E-value=9.3e-07 Score=69.44 Aligned_cols=48 Identities=25% Similarity=0.442 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCchhhhcc-cccccchhhhHhhhhhhcC
Q 009430 112 KGPWTQEEDDKITELVSKY--------GPTKWSVIAK-SLPGRIGKQCRERWHNHLN 159 (535)
Q Consensus 112 Kg~WT~EED~~Ll~lV~ky--------G~~~W~~IAk-~LpgRt~kqcr~Rw~n~L~ 159 (535)
+.+||+|||..|+++|.+| |..-|..+++ .+++++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999 5556999999 8999999999999999874
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.18 E-value=1.7e-06 Score=84.46 Aligned_cols=51 Identities=20% Similarity=0.387 Sum_probs=45.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccC
Q 009430 56 IRRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLN 107 (535)
Q Consensus 56 ~rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~ 107 (535)
..+...+||+||++++++++.+|| ++|..||+.|++||..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 345677899999999999999995 689999999999999999999987654
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.07 E-value=1.1e-05 Score=82.40 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-C-chhhh
Q 009430 61 GGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGP-T-KWSVI 138 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~-~-~W~~I 138 (535)
+.||..|...+++++.+||..+|..||..|+++|...++.. .++|=..... -.+-++++..|.+-.. . +...+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y-~~vFw~ry~e----i~d~ek~~~~IE~gE~ki~r~~~~ 185 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEY-NAVFWERCTE----LQDIERIMGQIERGEGKIQRRLSI 185 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHH-HHHHHHHGGG----CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHH-HHHHHHhHHH----hccHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999543 3332100000 0111222222222110 0 00000
Q ss_pred cccccccchhhhHhhhhhh--cCCCCCCCCCCHHHHHHHHHHHHHhCC----chhhHhh------------hCCCCCHhH
Q 009430 139 AKSLPGRIGKQCRERWHNH--LNPDIKKDAWTLEEELALMNAHRIHGN----KWAEIAK------------VLPGRTDNS 200 (535)
Q Consensus 139 Ak~LpgRt~kqcr~Rw~n~--L~p~ik~~~WT~EEd~~Li~lv~~~G~----kW~~IA~------------~lpgRT~~q 200 (535)
-..| .+--.+++.-|..+ .-+..+...||++||..||-.+.+||- .|..|.. .|..||+.+
T Consensus 186 ~~~l-~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~e 264 (304)
T 1ofc_X 186 KKAL-DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALE 264 (304)
T ss_dssp HHHH-HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHH
T ss_pred HHHH-HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence 0000 11111122222211 011235568999999999999999995 6999973 456799999
Q ss_pred HHHHHHHHHHhHHHH
Q 009430 201 IKNHWNSSLKKKLDF 215 (535)
Q Consensus 201 cknRw~~llkkk~~~ 215 (535)
|..|=+.|++-..+.
T Consensus 265 l~rRc~tLi~~iekE 279 (304)
T 1ofc_X 265 LQRRCNTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998765443
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.94 E-value=2.4e-06 Score=69.69 Aligned_cols=43 Identities=21% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHhh
Q 009430 61 GGWTPEEDETLRNAVSTFKGK---SWKKIAEFFPDRSEVQCLHRWQ 103 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~~---nW~~IAk~lp~RT~~qCr~Rw~ 103 (535)
..||.||+++|.+++..|... .|.+||..|||||..+|+.+|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 369999999999999999543 7999999999999999999986
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=2.3e-05 Score=62.05 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=45.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhh-hCCCCCHhHHHHHHHHH
Q 009430 159 NPDIKKDAWTLEEELALMNAHRIHGNKWAEIAK-VLPGRTDNSIKNHWNSS 208 (535)
Q Consensus 159 ~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~-~lpgRT~~qcknRw~~l 208 (535)
.|.+....||+||..++.+++.+||.+|..|++ .|++||..+|...|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 356778899999999999999999999999999 58999999999988643
No 74
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.81 E-value=1.2e-05 Score=68.56 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=50.3
Q ss_pred HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCchhhhcccc-----cccchhhhHhhhhhhc
Q 009430 98 CLHRWQKVLNPDLVKGPWTQEEDDKITELVSKYGPTKWSVIAKSL-----PGRIGKQCRERWHNHL 158 (535)
Q Consensus 98 Cr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~kyG~~~W~~IAk~L-----pgRt~kqcr~Rw~n~L 158 (535)
+.++|.++|.+ .+||.||++.|++++++|+ .+|..|+..+ ++|+..++++||..+.
T Consensus 20 t~eeY~~~L~~----~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 20 SEQEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CHHHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC----CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 56788888875 7899999999999999999 8999999998 4899999999998754
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.77 E-value=5.2e-05 Score=64.58 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=52.5
Q ss_pred hhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCC-----CCCHhHHHHHHHHHHHhHHHHH
Q 009430 152 ERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLP-----GRTDNSIKNHWNSSLKKKLDFY 216 (535)
Q Consensus 152 ~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lp-----gRT~~qcknRw~~llkkk~~~~ 216 (535)
+.|..+|. ...||.||...|++|+..|+.+|..|+..+. .||-.++|.||..+.++.+...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34556664 2689999999999999999999999999874 7999999999999999887644
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.66 E-value=5e-05 Score=64.14 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---chhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 164 KDAWTLEEELALMNAHRIHGN---KWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 164 ~~~WT~EEd~~Li~lv~~~G~---kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
--.||.|||+.||....+.|. .|..||+.|.+|+.+|+++||+.|++-.
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 356999999999999999986 7999999999999999999999988754
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.63 E-value=1.2e-05 Score=65.58 Aligned_cols=43 Identities=26% Similarity=0.633 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhHhhhCCCCCHhHHHHHHH
Q 009430 164 KDAWTLEEELALMNAHRIHGN----KWAEIAKVLPGRTDNSIKNHWN 206 (535)
Q Consensus 164 ~~~WT~EEd~~Li~lv~~~G~----kW~~IA~~lpgRT~~qcknRw~ 206 (535)
...||.+|+++|.+++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999999999985 7999999999999999999885
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00012 Score=57.89 Aligned_cols=45 Identities=16% Similarity=0.426 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHhhh
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAE-FFPDRSEVQCLHRWQK 104 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~nW~~IAk-~lp~RT~~qCr~Rw~~ 104 (535)
....||+||-+++.+++..| +.+|..|++ +|++|+..+|...|..
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~y-GKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQY-GKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHT-CSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh-CccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 34579999999999999999 558999998 6999999999877754
No 79
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.58 E-value=0.00057 Score=65.43 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCChhhhhhc--CCCCCHHHHHHH
Q 009430 59 AKGGWTPEEDETLRNAVSTFK--GKSWKKIAEF--FPDRSEVQCLHR 101 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg--~~nW~~IAk~--lp~RT~~qCr~R 101 (535)
....||..|-..|++++.+|| ...|..|+.. |.+++...+..-
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y 52 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRL 52 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHH
Confidence 445799999999999999998 4679999864 678999887653
No 80
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.61 E-value=1.6e-05 Score=63.79 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC---chhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 165 DAWTLEEELALMNAHRIHGN---KWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 165 ~~WT~EEd~~Li~lv~~~G~---kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
-.||.|||+.||....+.|. .|..||+.| +|+++||++||..|++-
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 46999999999999999997 799999999 99999999999988763
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.41 E-value=0.00023 Score=57.57 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhHhh-hCCCCCHhHHHHHHHH
Q 009430 163 KKDAWTLEEELALMNAHRIHGNKWAEIAK-VLPGRTDNSIKNHWNS 207 (535)
Q Consensus 163 k~~~WT~EEd~~Li~lv~~~G~kW~~IA~-~lpgRT~~qcknRw~~ 207 (535)
....||+||..++.+++.+||.+|..|++ .|++||..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 34689999999999999999999999999 5999999999999873
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.34 E-value=0.00023 Score=60.78 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHH
Q 009430 164 KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSS 208 (535)
Q Consensus 164 ~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~l 208 (535)
...||+||.+++.+++..||.+|..|+..|++||..+|..+|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999988644
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.30 E-value=0.00038 Score=56.27 Aligned_cols=46 Identities=20% Similarity=0.441 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHhhh
Q 009430 58 RAKGGWTPEEDETLRNAVSTFKGKSWKKIAE-FFPDRSEVQCLHRWQK 104 (535)
Q Consensus 58 r~kgkWT~EEDe~L~klV~~yg~~nW~~IAk-~lp~RT~~qCr~Rw~~ 104 (535)
.....||+||.+++.+++..| +.+|..|++ +|++|+..+|...|..
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~y-GKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKY-GKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHT-CSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHh-CccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 445679999999999999999 558999999 6999999999887764
No 84
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.29 E-value=0.00025 Score=76.35 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=43.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhcc
Q 009430 57 RRAKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL 106 (535)
Q Consensus 57 rr~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L 106 (535)
.+...+||.||.+++++++.+| +++|..||+.|+.||..||+.+|.++.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~y-Gkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKY-GRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHH-TTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHH-CcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3556789999999999999999 568999999999999999999998643
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.21 E-value=0.0004 Score=59.27 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhh
Q 009430 59 AKGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQK 104 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~ 104 (535)
....||+||.+++.+++..| +++|..||+.|++|+..+|...|..
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~-gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQH-PKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHS-TTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 34579999999999999999 5689999999999999999887754
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.05 E-value=0.0028 Score=66.22 Aligned_cols=137 Identities=12% Similarity=0.163 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChhhhhhcCC-CCCHHHHHHHhhhccCCCCCC-CCCCH----------------HHHHH
Q 009430 61 GGWTPEEDETLRNAVSTFKGKSWKKIAEFFP-DRSEVQCLHRWQKVLNPDLVK-GPWTQ----------------EEDDK 122 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~~nW~~IAk~lp-~RT~~qCr~Rw~~~L~p~~kK-g~WT~----------------EED~~ 122 (535)
+.||.-|=..+++++.+||..+-..||..|. +++...++ +|.++|-..... ..|-. +..++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999998 99999987 555544211110 11221 11122
Q ss_pred HHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHHHhCC----chhhHhhh------
Q 009430 123 ITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGN----KWAEIAKV------ 192 (535)
Q Consensus 123 Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~~~G~----kW~~IA~~------ 192 (535)
|...|..|. ..|..+-- +|-....+...||++||..||-.+.+||- .|..|-..
T Consensus 203 L~~Ki~~y~-~P~~~L~i---------------~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~ 266 (374)
T 2y9y_A 203 LRRKLSEYK-NPFFDLKL---------------KHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPL 266 (374)
T ss_dssp HHHHHTTCS-SHHHHCCC---------------SSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSG
T ss_pred HHHHHHHcc-CCHHHcee---------------ccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcc
Confidence 222222232 22322210 01111124568999999999999999994 59999542
Q ss_pred ------CCCCCHhHHHHHHHHHHHhHHH
Q 009430 193 ------LPGRTDNSIKNHWNSSLKKKLD 214 (535)
Q Consensus 193 ------lpgRT~~qcknRw~~llkkk~~ 214 (535)
|..||+..|..|=+.|++-..+
T Consensus 267 FrFDwF~kSRT~~EL~rRc~tLi~~IeK 294 (374)
T 2y9y_A 267 FELDFYFRSRTPVELARRGNTLLQCLEK 294 (374)
T ss_dssp GGSCHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4679999999999999976543
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.85 E-value=0.0041 Score=52.60 Aligned_cols=48 Identities=17% Similarity=0.357 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC--CChhhhhhcCCCCCHHHHHHHhhhcc
Q 009430 59 AKGGWTPEEDETLRNAVSTFKG--KSWKKIAEFFPDRSEVQCLHRWQKVL 106 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~--~nW~~IAk~lp~RT~~qCr~Rw~~~L 106 (535)
.---||.|||..|+....+-|. ..|..||+.|.+|+..|+..||+.++
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3446999999999999998765 47999999999999999999998754
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.66 E-value=0.0013 Score=54.64 Aligned_cols=50 Identities=20% Similarity=0.475 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----------chhhHhhhCC----CCCHhHHHHHHHHHHHhH
Q 009430 163 KKDAWTLEEELALMNAHRIHGN----------KWAEIAKVLP----GRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 163 k~~~WT~EEd~~Li~lv~~~G~----------kW~~IA~~lp----gRT~~qcknRw~~llkkk 212 (535)
+...||.+|-..||++...+.. .|..||..|. .||+.||+++|+.|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999976432 4999999763 699999999999888864
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.53 E-value=0.001 Score=55.32 Aligned_cols=48 Identities=25% Similarity=0.572 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC------C---ChhhhhhcCC----CCCHHHHHHHhhhcc
Q 009430 59 AKGGWTPEEDETLRNAVSTFKG------K---SWKKIAEFFP----DRSEVQCLHRWQKVL 106 (535)
Q Consensus 59 ~kgkWT~EEDe~L~klV~~yg~------~---nW~~IAk~lp----~RT~~qCr~Rw~~~L 106 (535)
....||.+|-.+|+.+...... . .|..||..|. .|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3467999999999999876311 1 4999999874 799999999998864
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.44 E-value=0.00049 Score=55.22 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHhCC--CchhhhcccccccchhhhHhhhhhhcC
Q 009430 114 PWTQEEDDKITELVSKYGP--TKWSVIAKSLPGRIGKQCRERWHNHLN 159 (535)
Q Consensus 114 ~WT~EED~~Ll~lV~kyG~--~~W~~IAk~LpgRt~kqcr~Rw~n~L~ 159 (535)
.||.|||..|+..+++.|+ ..|..||+.| +|++.|+.+||..++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999985 3799999999 9999999999987653
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.14 E-value=0.024 Score=48.24 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChhhhhhcCC-----CCCHHHHHHHhhhcc
Q 009430 61 GGWTPEEDETLRNAVSTFKGKSWKKIAEFFP-----DRSEVQCLHRWQKVL 106 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~~nW~~IAk~lp-----~RT~~qCr~Rw~~~L 106 (535)
..||.||...|..++.+| ...|.-|+..+. .|+..+.+.||..+.
T Consensus 31 ~~WT~eETd~LfdLc~~f-dlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRF-DLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHT-TTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 469999999999999999 667999999874 799999999998764
No 92
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.21 E-value=0.11 Score=52.11 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcC--CChhhhhh--cCCCCCHHHHHHHhhhcc
Q 009430 60 KGGWTPEEDETLRNAVSTFKG--KSWKKIAE--FFPDRSEVQCLHRWQKVL 106 (535)
Q Consensus 60 kgkWT~EEDe~L~klV~~yg~--~nW~~IAk--~lp~RT~~qCr~Rw~~~L 106 (535)
++.||..|-..|++.+.+||. ..|..|+. .|..++...+..-|..++
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 567999999999999999985 46999965 467899887776665544
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.53 E-value=0.12 Score=41.06 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCC--hhhhhhcCC--CCCHHHHHHHhhhc
Q 009430 57 RRAKGGWTPEEDETLRNAVSTFKGKS--WKKIAEFFP--DRSEVQCLHRWQKV 105 (535)
Q Consensus 57 rr~kgkWT~EEDe~L~klV~~yg~~n--W~~IAk~lp--~RT~~qCr~Rw~~~ 105 (535)
++.+-.||+|..+.++.+|...|... |+.|.+.|+ +.|..++..|.++|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34566899999999999999998442 889998875 88999999888875
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.44 E-value=0.36 Score=38.28 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCc---hhhHhhhC--CCCCHhHHHHHHHHH
Q 009430 161 DIKKDAWTLEEELALMNAHRIHGNK---WAEIAKVL--PGRTDNSIKNHWNSS 208 (535)
Q Consensus 161 ~ik~~~WT~EEd~~Li~lv~~~G~k---W~~IA~~l--pgRT~~qcknRw~~l 208 (535)
...+-.||+|..+.++++++.+|.. |..|.+.| +|.|..+|+.|...+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999965 78998875 789999999986543
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=89.92 E-value=0.46 Score=48.44 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 164 KDAWTLEEELALMNAHRIHGN-KWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 164 ~~~WT~EEd~~Li~lv~~~G~-kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
.+.||..|...++.+..+||. .|..||..|+|+|...|+.++..+.++.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 357999999999999999995 7999999999999999998887776653
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.72 E-value=0.32 Score=48.80 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChhhhhh
Q 009430 61 GGWTPEEDETLRNAVSTFKGKSWKKIAE 88 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~~nW~~IAk 88 (535)
..|+.+||..|+.+|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999965
No 97
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=86.96 E-value=0.86 Score=43.11 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CchhhHhhh--CCCCCHhHHHHHHHHHHHhHHH
Q 009430 163 KKDAWTLEEELALMNAHRIHG---NKWAEIAKV--LPGRTDNSIKNHWNSSLKKKLD 214 (535)
Q Consensus 163 k~~~WT~EEd~~Li~lv~~~G---~kW~~IA~~--lpgRT~~qcknRw~~llkkk~~ 214 (535)
....||+.|-..|+.++..|| .+|..|+.. |.+++...++..+..++..-.+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999 579999964 7899999999988877765443
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=71.42 E-value=3.1 Score=43.47 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcC---CChhhhhhc------------CCCCCHHHHHHHhhh
Q 009430 60 KGGWTPEEDETLRNAVSTFKG---KSWKKIAEF------------FPDRSEVQCLHRWQK 104 (535)
Q Consensus 60 kgkWT~EEDe~L~klV~~yg~---~nW~~IAk~------------lp~RT~~qCr~Rw~~ 104 (535)
+..||.|||..|+-++.+||- ++|..|-.. |..||+..+..|...
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 346999999999999999998 899999443 236888888888654
No 99
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=66.28 E-value=45 Score=28.84 Aligned_cols=80 Identities=13% Similarity=-0.000 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhc-----cCCCCC----CCCCCHHHHHHHHHHHHHh
Q 009430 60 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKV-----LNPDLV----KGPWTQEEDDKITELVSKY 130 (535)
Q Consensus 60 kgkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~-----L~p~~k----Kg~WT~EED~~Ll~lV~ky 130 (535)
....|.|+-..++.++.. +....+||+.| +.+...++.-.+++ +.+... ....++++.+.|++++.+.
T Consensus 30 ~~~~s~e~r~~iv~~~~~--G~s~~~iA~~l-gis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAHQ--GVRPCDISRQL-RVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp TSCCCHHHHHHHHHHHHT--TCCHHHHHHHH-TCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 346899998888888742 56789999998 56665554322221 222222 2347888888888888775
Q ss_pred CCCchhhhcccc
Q 009430 131 GPTKWSVIAKSL 142 (535)
Q Consensus 131 G~~~W~~IAk~L 142 (535)
....-..|+..+
T Consensus 107 ~~~s~~~i~~~l 118 (149)
T 1k78_A 107 PTMFAWEIRDRL 118 (149)
T ss_dssp TTCCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 422333454444
No 100
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=64.99 E-value=55 Score=28.69 Aligned_cols=78 Identities=12% Similarity=-0.030 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccC------CCCC----CCCCCHHHHHHHHHHHHHh
Q 009430 61 GGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLN------PDLV----KGPWTQEEDDKITELVSKY 130 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~------p~~k----Kg~WT~EED~~Ll~lV~ky 130 (535)
...|.|+-..++.++.. +....+||+.| +.+...++ +|.+.+. +... ....++++.+.|++++.+.
T Consensus 24 ~~~s~e~r~~ii~l~~~--G~s~~~IA~~l-gis~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQ--GVRPCDISRQL-RVSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp CSSCHHHHHHHHHHHHH--TCCHHHHHHHH-TCCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHc--CCCHHHHHHHH-CcCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 46899998888888753 56789999998 55555544 4544332 2111 2347888888888888765
Q ss_pred CCCchhhhcccc
Q 009430 131 GPTKWSVIAKSL 142 (535)
Q Consensus 131 G~~~W~~IAk~L 142 (535)
.......|+..+
T Consensus 100 ~~~s~~~i~~~l 111 (159)
T 2k27_A 100 PTMFAWEIRDRL 111 (159)
T ss_dssp SSSCHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 433334455444
No 101
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=61.65 E-value=17 Score=29.34 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHHHHHh
Q 009430 170 EEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLDFYL 217 (535)
Q Consensus 170 EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~~~~~ 217 (535)
+.+..++.++...|....+||..+ |.+...|+.+....+++......
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778889999999999 99999999998877766554443
No 102
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=61.45 E-value=11 Score=28.14 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 167 WTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 167 WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
++ +.+..++.++...|..+.+||..+ |-+...++++.+..+++..
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 44 455566667778899999999999 8899999998877666543
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=56.34 E-value=15 Score=28.19 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHH----hCCchhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 170 EEELALMNAHRI----HGNKWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 170 EEd~~Li~lv~~----~G~kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
+.+..++.+... .|..|.+||..+ |-+...|+.+....+++.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 445555666655 678999999999 999999999887776654
No 104
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=51.75 E-value=16 Score=27.70 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=32.1
Q ss_pred HHHHHHHHHHH----HhCCchhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 170 EEELALMNAHR----IHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 170 EEd~~Li~lv~----~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
+.+..++.++. ..|..+.+||..+ |-+...++.+....+++.
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34445555555 3578999999999 999999999988777654
No 105
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=44.22 E-value=54 Score=28.52 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCC----HhHHHHHHHHHHHhHHH
Q 009430 174 ALMNAHRIHGN--------KWAEIAKVLPGRT----DNSIKNHWNSSLKKKLD 214 (535)
Q Consensus 174 ~Li~lv~~~G~--------kW~~IA~~lpgRT----~~qcknRw~~llkkk~~ 214 (535)
.|..+|...|+ .|.+|+..|.--+ ...+++.|..+|-..-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 46666666664 7999999883322 46889989888766443
No 106
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.52 E-value=47 Score=28.26 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHHHHHhhcC
Q 009430 168 TLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLDFYLATG 220 (535)
Q Consensus 168 T~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~~~~~~~~ 220 (535)
++.+-..|. +...|-...+||..+ |-+...|+++....+++........+
T Consensus 111 ~~~~r~v~~--~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 111 SKFEKEVLT--YLIRGYSYREIATIL-SKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp CHHHHHHHH--HHTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHH--HHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444 567789999999999 89999999999887766555444443
No 107
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.83 E-value=50 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 167 WTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 167 WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
+|+.|- .++.++ ..|....+||..+ |-+...++.+...++++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444444 444555 6788999999999 88999999988877665
No 108
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=38.68 E-value=1.7e+02 Score=24.32 Aligned_cols=78 Identities=9% Similarity=0.014 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCC-----CCCCCCCCHHHHHHHHHHHHHhCCCch
Q 009430 61 GGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNP-----DLVKGPWTQEEDDKITELVSKYGPTKW 135 (535)
Q Consensus 61 gkWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p-----~~kKg~WT~EED~~Ll~lV~kyG~~~W 135 (535)
...|.++-..++.++.. +..-.+||+.| +.+...++.-...+... .......+++++..|+.+ ...+...-
T Consensus 5 ~~~s~~~r~~i~~~~~~--G~s~~~ia~~l-gis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL--NVSLHEMSRKI-SRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHHT--TCCHHHHHHHH-TCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCCH
T ss_pred ccCCHHHHHHHHHHHHc--CCCHHHHHHHH-CcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCCH
Confidence 35788888888877643 56789999998 67777665433322111 112235788888888877 44443344
Q ss_pred hhhcccc
Q 009430 136 SVIAKSL 142 (535)
Q Consensus 136 ~~IAk~L 142 (535)
..|+..+
T Consensus 81 ~~i~~~l 87 (141)
T 1u78_A 81 RDIRNEL 87 (141)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5666666
No 109
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.70 E-value=41 Score=26.79 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH----hCCchhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 170 EEELALMNAHRI----HGNKWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 170 EEd~~Li~lv~~----~G~kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
+.+..++.+... .|..+.+||..+ |-+...|+++....+++.
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 345556666655 578999999999 999999999877666554
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.52 E-value=30 Score=29.81 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 174 ALMNAHRIHGN--------KWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 174 ~Li~lv~~~G~--------kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
.|..+|...|+ .|..|+..|.--....++..|..+|-..
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 46667777774 6999999884444889999999887543
No 111
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=35.73 E-value=74 Score=29.51 Aligned_cols=35 Identities=34% Similarity=0.674 Sum_probs=26.1
Q ss_pred HHHHHhhhccC-CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 009430 97 QCLHRWQKVLN-PDLVKGPWTQEEDDKIT--------ELVSKYG 131 (535)
Q Consensus 97 qCr~Rw~~~L~-p~~kKg~WT~EED~~Ll--------~lV~kyG 131 (535)
.+...|..-.. |....|-||.|+|+.|. .++++||
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 56667766555 56788999999998774 5667777
No 112
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.16 E-value=61 Score=26.33 Aligned_cols=46 Identities=30% Similarity=0.286 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 163 KKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 163 k~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
.....|+.|-+.|.- +. .|..-.+||..| |-+...|+++...+++|
T Consensus 26 ~~~~Lt~rE~~Vl~l-~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQE-VE-KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHH-HH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHH-HH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345678877766654 43 788999999999 89999999998887765
No 113
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.34 E-value=56 Score=28.89 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 173 LALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 173 ~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
..++.++...|-...+||..+ |-+...++++....+++..
T Consensus 146 r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 146 RMAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp HHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344445555678899999999 8999999999887776543
No 114
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=34.03 E-value=56 Score=26.54 Aligned_cols=44 Identities=23% Similarity=0.104 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 166 AWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 166 ~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
.+|+.|-+.|. ++ ..|..-.+||..+ |.+...|+++...++++.
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666665555 45 7888999999999 889999999887776653
No 115
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=33.41 E-value=64 Score=26.29 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH---Hhhhc--cCCCC----CCCCCCHHHHHHHHHHHHHhC
Q 009430 62 GWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLH---RWQKV--LNPDL----VKGPWTQEEDDKITELVSKYG 131 (535)
Q Consensus 62 kWT~EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~---Rw~~~--L~p~~----kKg~WT~EED~~Ll~lV~kyG 131 (535)
..+.|+-..++.++. .+....+||+.| +.+...++. +|... +.+.. .....++++.+.|++++.+..
T Consensus 17 ~~s~~~r~~i~~~~~--~g~s~~~ia~~l-gis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~ 92 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA--DGIRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSP 92 (128)
T ss_dssp CCCHHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCT
T ss_pred cCCHHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCc
Confidence 588998888888774 256788999998 566555433 33221 12211 122356666666666665443
No 116
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=33.36 E-value=53 Score=25.92 Aligned_cols=43 Identities=30% Similarity=0.227 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 166 AWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 166 ~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
.+|+.|-+.|. ++ ..|....+||..+ |-+...|+++...++++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46766665554 44 6788999999999 89999999988877665
No 117
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.27 E-value=95 Score=26.19 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 170 EEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 170 EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
+.+..++.++...|-...+||..+ |.+...++.+....+++..
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 345566667777899999999999 8999999998887665543
No 118
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.11 E-value=66 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 172 ELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 172 d~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
+..++.+ ...|..-.+||..+ |-+...++++...++++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455666 46788899999999 89999999988877765
No 119
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=31.40 E-value=17 Score=31.96 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=38.1
Q ss_pred HHHHHHHHhcC-------CChhhhhhcCC--C---CCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHH
Q 009430 70 TLRNAVSTFKG-------KSWKKIAEFFP--D---RSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITELVSK 129 (535)
Q Consensus 70 ~L~klV~~yg~-------~nW~~IAk~lp--~---RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~lV~k 129 (535)
.|.++|.+.|+ +.|.+||..|. . -.....+.+|.++|.+-- .++++|-..|.+-|..
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHHH
Confidence 34555555543 35999999985 1 124567888888876432 3788999988877653
No 120
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=31.37 E-value=63 Score=24.09 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 165 DAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 165 ~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
..+|+.|-+.|.- + ..|....+||..+ |-+...++.+...++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4577777666554 4 6788999999999 88999999988876655
No 121
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=31.36 E-value=42 Score=29.56 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 174 ALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 174 ~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
.++.++...|-.+.+||..+ |-+...|+++....+++.
T Consensus 142 ~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 142 ALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34445556678899999999 899999999988777654
No 122
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.06 E-value=30 Score=30.94 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCCC
Q 009430 66 EEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLV 111 (535)
Q Consensus 66 EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~k 111 (535)
+-|..|++++.+.+...|.+||+.+ |-+...|+.|++++...+.-
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 4577888888888888999999999 88999999999987665543
No 123
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.95 E-value=2.3e+02 Score=23.49 Aligned_cols=89 Identities=11% Similarity=0.099 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHh---hhhhhc--CCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 009430 113 GPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRE---RWHNHL--NPDIKKDAWTLEEELALMNAHRIHGNKWA 187 (535)
Q Consensus 113 g~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~---Rw~n~L--~p~ik~~~WT~EEd~~Li~lv~~~G~kW~ 187 (535)
...+.++-..++.++. -| ..-..||+.+ |.+...++. +|..+- .........+.+++..|+.+...-.-.-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~l-gis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~ 81 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKI-SRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTAR 81 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHH
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHH
Confidence 4578888888888774 46 5688999988 555555432 222211 11112235788888888877433334557
Q ss_pred hHhhhCCC--CCHhHHHHHH
Q 009430 188 EIAKVLPG--RTDNSIKNHW 205 (535)
Q Consensus 188 ~IA~~lpg--RT~~qcknRw 205 (535)
+|+..| | -+...|....
T Consensus 82 ~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 82 DIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHH-CCCccHHHHHHHH
Confidence 888888 4 5666665543
No 124
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=29.76 E-value=67 Score=26.92 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=27.2
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCC----HhHHHHHHHHHHHhH
Q 009430 174 ALMNAHRIHGN--------KWAEIAKVLPGRT----DNSIKNHWNSSLKKK 212 (535)
Q Consensus 174 ~Li~lv~~~G~--------kW~~IA~~lpgRT----~~qcknRw~~llkkk 212 (535)
.|..+|...|+ .|.+|+..|.--. ...++..|..+|-..
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 45666666664 7999999983322 468888888777543
No 125
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=29.30 E-value=80 Score=28.69 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 170 EEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 170 EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
+.+..++.++...|....+||..+ |-+...|+.+....+++..
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 555666667767789999999999 9999999998877666543
No 126
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.77 E-value=2.2e+02 Score=24.29 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhH---hhhhhh--cCCCCC----CCCCCHHHHHHHHHHHHHhC
Q 009430 113 GPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCR---ERWHNH--LNPDIK----KDAWTLEEELALMNAHRIHG 183 (535)
Q Consensus 113 g~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr---~Rw~n~--L~p~ik----~~~WT~EEd~~Li~lv~~~G 183 (535)
..++.++-..++.++. .| .....||+.+ +.+...++ .+|... +.+... ....+.++.+.|++++....
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~l-gis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 107 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQL-RVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNP 107 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCc
Confidence 3688898888888885 56 5788999988 44444433 333221 222211 23478888888888876543
Q ss_pred -CchhhHhhhC
Q 009430 184 -NKWAEIAKVL 193 (535)
Q Consensus 184 -~kW~~IA~~l 193 (535)
..-.+|+..|
T Consensus 108 ~~s~~~i~~~l 118 (149)
T 1k78_A 108 TMFAWEIRDRL 118 (149)
T ss_dssp TCCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 2334565544
No 127
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.37 E-value=1.1e+02 Score=20.16 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHH
Q 009430 166 AWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHW 205 (535)
Q Consensus 166 ~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw 205 (535)
..+.++...++.++ ..|....+||+.| |.+...|..+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45667766777665 4678899999999 78887776654
No 128
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=28.32 E-value=1.5e+02 Score=24.50 Aligned_cols=45 Identities=27% Similarity=0.248 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 164 KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 164 ~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
....|+.|-+.|. ++ ..|....+||..| |-+...|+.+...+++|
T Consensus 32 ~~~Lt~re~~Vl~-l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLR-LF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHH-HH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4568888877664 44 3788999999999 88999999988877665
No 129
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=27.12 E-value=59 Score=27.97 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCC----HhHHHHHHHHHHHhH
Q 009430 174 ALMNAHRIHGN--------KWAEIAKVLPGRT----DNSIKNHWNSSLKKK 212 (535)
Q Consensus 174 ~Li~lv~~~G~--------kW~~IA~~lpgRT----~~qcknRw~~llkkk 212 (535)
.|..+|...|+ .|.+|+..|.--. ...++..|..+|-..
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46667777774 7999999983322 567888888777553
No 130
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.96 E-value=30 Score=30.91 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhhcCCC
Q 009430 118 EEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD 161 (535)
Q Consensus 118 EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p~ 161 (535)
+-|..|+.++++.|...|..||+.+ |-+...|+.|+..+...+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5688899999999988999999999 889999999998765433
No 131
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=26.77 E-value=42 Score=29.35 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 174 ALMNAHRIHGN--------KWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 174 ~Li~lv~~~G~--------kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
.|..+|...|+ .|.+|+..|.--....+++.|..+|-..-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 35556666664 69999998844348999999998886543
No 132
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.29 E-value=66 Score=25.64 Aligned_cols=43 Identities=28% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHh
Q 009430 166 AWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKK 211 (535)
Q Consensus 166 ~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkk 211 (535)
.+|+.|-+.|. ++ ..|..-.+||..| |-+...|+++...++++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45666665554 44 6788999999999 89999999988877665
No 133
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.39 E-value=2.1e+02 Score=24.61 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCC----HhHHHHHHHHHHHhH
Q 009430 174 ALMNAHRIHGN--------KWAEIAKVLPGRT----DNSIKNHWNSSLKKK 212 (535)
Q Consensus 174 ~Li~lv~~~G~--------kW~~IA~~lpgRT----~~qcknRw~~llkkk 212 (535)
.|..+|...|+ .|.+|+..|.--. ...++..|..+|-..
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46666677764 6999999883322 368888888777654
No 134
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=24.45 E-value=1.5e+02 Score=25.09 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhH
Q 009430 167 WTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 167 WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk 212 (535)
+++ .+..++.++...|....+||..+ |-+...++.+....+++.
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 444 44556667777899999999999 999999999888776553
No 135
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.59 E-value=86 Score=28.18 Aligned_cols=36 Identities=14% Similarity=0.405 Sum_probs=28.1
Q ss_pred hhhhhhcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHHHH
Q 009430 83 WKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKITE 125 (535)
Q Consensus 83 W~~IAk~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~Ll~ 125 (535)
-..||..+.|+|+.+||..|. + ...||+||++.+++
T Consensus 118 c~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 467888999999999998763 1 23599999988764
No 136
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.18 E-value=38 Score=29.15 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHHHHHHHhC-------CCchhhhcccccccchhhhHhhhhhhcC
Q 009430 122 KITELVSKYG-------PTKWSVIAKSLPGRIGKQCRERWHNHLN 159 (535)
Q Consensus 122 ~Ll~lV~kyG-------~~~W~~IAk~LpgRt~kqcr~Rw~n~L~ 159 (535)
.|..+|.+.| ...|..|+..|+--.+..++..|.++|-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILL 97 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 4556666665 2579999999854347788888888775
No 137
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.08 E-value=2.9e+02 Score=23.81 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhhhcccccccchhhhHhhhhhh------cCCCCC----CCCCCHHHHHHHHHHHHHhC
Q 009430 114 PWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNH------LNPDIK----KDAWTLEEELALMNAHRIHG 183 (535)
Q Consensus 114 ~WT~EED~~Ll~lV~kyG~~~W~~IAk~LpgRt~kqcr~Rw~n~------L~p~ik----~~~WT~EEd~~Li~lv~~~G 183 (535)
..+.++-..++.++. .| .....||+.+ +.+...++ ||... +.+... ....+.++.+.|++++....
T Consensus 25 ~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 100 (159)
T 2k27_A 25 PLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNP 100 (159)
T ss_dssp SSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCc
Confidence 588888888888884 56 5788999988 44444443 34332 122111 23578888888888876543
Q ss_pred -CchhhHhhhC
Q 009430 184 -NKWAEIAKVL 193 (535)
Q Consensus 184 -~kW~~IA~~l 193 (535)
..-.+|+..+
T Consensus 101 ~~s~~~i~~~l 111 (159)
T 2k27_A 101 TMFAWEIRDRL 111 (159)
T ss_dssp SSCHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 2334555544
No 138
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=21.73 E-value=4.3e+02 Score=23.80 Aligned_cols=157 Identities=5% Similarity=-0.077 Sum_probs=82.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcC------------C--ChhhhhhcCCCCCHHHHHHHhhhcc--------CCC-----
Q 009430 57 RRAKGGWTPEEDETLRNAVSTFKG------------K--SWKKIAEFFPDRSEVQCLHRWQKVL--------NPD----- 109 (535)
Q Consensus 57 rr~kgkWT~EEDe~L~klV~~yg~------------~--nW~~IAk~lp~RT~~qCr~Rw~~~L--------~p~----- 109 (535)
++....||.||-+.|.+.+..... . ..-.++-..+-|...-|..+|..+- ...
T Consensus 20 ~~~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~tGlR~~E~~~L~~~di~~~~~~i~i~~~~~~~~ 99 (244)
T 3nkh_A 20 FQSNAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFH 99 (244)
T ss_dssp -CCSCCCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHTCBGGGEETTTTEEEECCEEEEEE
T ss_pred ccccccCCHHHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHhCchHHHHhcCcHHHcCccCCeEEEeeEeeecc
Confidence 345567999999999999887532 1 1122233445688888888887751 110
Q ss_pred -----------------CCCCCCCHHHHHHHHHHHHHh----------CCCchhhhcccccccchhhhHhhhhhhcCC-C
Q 009430 110 -----------------LVKGPWTQEEDDKITELVSKY----------GPTKWSVIAKSLPGRIGKQCRERWHNHLNP-D 161 (535)
Q Consensus 110 -----------------~kKg~WT~EED~~Ll~lV~ky----------G~~~W~~IAk~LpgRt~kqcr~Rw~n~L~p-~ 161 (535)
.+.-+.+++--+.|.+++... ....|--+...-..-+...+...|..++.. +
T Consensus 100 ~~~~~~~~~~~~Kt~~~~r~vpl~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~g 179 (244)
T 3nkh_A 100 DESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVG 179 (244)
T ss_dssp CTTSCEEEEECC---CCCEEEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHHHHHHHHHHHHTT
T ss_pred CCCccccccCCCCCCCCceeEecCHHHHHHHHHHHHHHHHhhhccccCCCCCeEEECCCCCCCchhhHHHHHHHHHHHcC
Confidence 011135666666666665443 112222221110012334455555554321 1
Q ss_pred CCCCCCCHHHHHH-HHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHHH
Q 009430 162 IKKDAWTLEEELA-LMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLD 214 (535)
Q Consensus 162 ik~~~WT~EEd~~-Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~~ 214 (535)
+. ..++.-.=+. ..-.+...|..-..|+..+.+.+......+|.......+.
T Consensus 180 i~-~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~~~Y~~~~~~~~~ 232 (244)
T 3nkh_A 180 ID-KEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDK 232 (244)
T ss_dssp CC-SCCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred CC-CCceeecchHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcCCHHHHH
Confidence 21 2344433221 2223345577888899999777777776777766655443
No 139
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=21.63 E-value=48 Score=29.03 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHHHHHhC-------CCchhhhccccc--cc---chhhhHhhhhhhcCCCCCCCCCCHHHHHHHHHHHH
Q 009430 122 KITELVSKYG-------PTKWSVIAKSLP--GR---IGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHR 180 (535)
Q Consensus 122 ~Ll~lV~kyG-------~~~W~~IAk~Lp--gR---t~kqcr~Rw~n~L~p~ik~~~WT~EEd~~Li~lv~ 180 (535)
.|..+|.+.| .+.|..|+..|. .- .....+..|..+|.+- ..++.+|-..|.+-+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 3445555554 357999999883 21 2356788888887543 2478888888877654
No 140
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.38 E-value=3.1e+02 Score=22.16 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC----chhhHhhhCCC---------------CCHhHHHHHHHHHHHhH
Q 009430 162 IKKDAWTLEEELALMNAHRIHGN----KWAEIAKVLPG---------------RTDNSIKNHWNSSLKKK 212 (535)
Q Consensus 162 ik~~~WT~EEd~~Li~lv~~~G~----kW~~IA~~lpg---------------RT~~qcknRw~~llkkk 212 (535)
..+..||.++-..|...+..... .=..||..+ + -+..+|+++|.+...+.
T Consensus 9 r~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l-~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~ 77 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC-NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEI 77 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CchhhcccccccccCcCCHHHHHHHHHHHHHHH
Confidence 45667999888888777765331 244666666 4 88999999776554443
No 141
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=21.23 E-value=60 Score=27.92 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcC-------CChhhhhhcCCCCC----HHHHHHHhhhccC
Q 009430 69 ETLRNAVSTFKG-------KSWKKIAEFFPDRS----EVQCLHRWQKVLN 107 (535)
Q Consensus 69 e~L~klV~~yg~-------~nW~~IAk~lp~RT----~~qCr~Rw~~~L~ 107 (535)
-.|..+|.+.|+ +.|.+||..|.--. ..+.+.+|.++|.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 457788888764 35999999985322 4566777777664
No 142
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.08 E-value=1.5e+02 Score=27.57 Aligned_cols=112 Identities=20% Similarity=0.295 Sum_probs=60.4
Q ss_pred hcCCCCCHHHHHHHhhhccCCCCCCCCCCHHHHHHH-HHHHHHhCCCc--hhhhcccccccchh---hhHhhhhhhcC-C
Q 009430 88 EFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKI-TELVSKYGPTK--WSVIAKSLPGRIGK---QCRERWHNHLN-P 160 (535)
Q Consensus 88 k~lp~RT~~qCr~Rw~~~L~p~~kKg~WT~EED~~L-l~lV~kyG~~~--W~~IAk~LpgRt~k---qcr~Rw~n~L~-p 160 (535)
.+|.=++......+-..++..+ ..+..-++| ..+..+.|..+ =..|-..+-+.+.. .+-+.|..-.. |
T Consensus 36 ~FF~~~st~e~~~kv~eii~~~-----~e~s~~~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP 110 (168)
T 3cz6_A 36 LFFHFGSTRQFMDKLHEVISGD-----YEPSQAEKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPP 110 (168)
T ss_dssp GGGGCSSHHHHHHHHHHHHHSC-----CCTTCHHHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSC
T ss_pred HHHccCCHHHHHHHHHHHHhcc-----cChhhHHHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCC
Confidence 3444578888888888887633 233333444 44547777432 12232333333322 45555554444 4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHH
Q 009430 161 DIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLK 210 (535)
Q Consensus 161 ~ik~~~WT~EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llk 210 (535)
.-..|-||.|+|+.|. +++=..|.+....-....+..||+.+..
T Consensus 111 ~N~pGIWT~eDDe~L~------s~d~~dikrL~kKHG~erie~R~~FLe~ 154 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLK------SNDQEQIRKLVKKHGTGRMEMRKRFFEK 154 (168)
T ss_dssp TTCTTCCCHHHHHHHH------SCCHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_pred CCCCCCCChhhHHHHH------cCCHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 5668999999999876 2222333333322344455556654443
No 143
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.93 E-value=55 Score=28.63 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 170 EEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 170 EEd~~Li~lv~~~G~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
+++..++.+....|-.-.+||..+ |-+...++++....+++..
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 344556667667788999999999 8999999999887665543
No 144
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.25 E-value=1.4e+02 Score=25.76 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhC-CchhhHhhhCCCCCHhHHHHHHHHHHHhHH
Q 009430 171 EELALMNAHRIHG-NKWAEIAKVLPGRTDNSIKNHWNSSLKKKL 213 (535)
Q Consensus 171 Ed~~Li~lv~~~G-~kW~~IA~~lpgRT~~qcknRw~~llkkk~ 213 (535)
-|..|+.++...| ..|.+||+.+ |-+...|..+++.+.+..+
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 3456666666655 5899999999 8899999999998887654
No 145
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.03 E-value=82 Score=28.45 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHhhhccCCCC
Q 009430 66 EEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDL 110 (535)
Q Consensus 66 EEDe~L~klV~~yg~~nW~~IAk~lp~RT~~qCr~Rw~~~L~p~~ 110 (535)
+-|..|+.++...+...|.+||+.+ +-+...|+.|++++...++
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4566777788888788999999999 7899999999988765444
Done!