BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009431
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/492 (66%), Positives = 408/492 (82%), Gaps = 3/492 (0%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
TSLGPKGMDKMI G+V ITNDGATIL +M+VL PAA+MLVELSK+QD AGDGTT+V
Sbjct: 29 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSV 88
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
V+IAG+LL C LL GIHPT+IS++ KA +++LT M+ PVELSDR++L+ SA+T
Sbjct: 89 VIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAAT 148
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
SLNSKVVSQYS+LL+P++VD+V+ V+DP VDLRDI+IVKKLGGT+DD ELV+GLV
Sbjct: 149 SLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVL 208
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
+K +++ G TRVE AKI +IQF +S PKTD++ IVVSDY QMDR+L+EER YIL ++
Sbjct: 209 TQKVANS--GITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLV 266
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
K+IK TGCNVLLIQKSILRDA++DL+LH+L K KIMVVKD+ER++IEFI KT+ P+A+
Sbjct: 267 KQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAH 326
Query: 345 IDHFRAEKLGHADLVEELSL-GDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHD 403
+D F A+ LG A+L EE+SL G GK++KITG G+T T++VRGSN+LV++EAERS+HD
Sbjct: 327 VDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHD 386
Query: 404 ALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAE 463
ALCV+RCLV KR LIAGGGAPEIEL+ +L +++ LSGME YC+R+FA+A+EVIP TLAE
Sbjct: 387 ALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAE 446
Query: 464 NAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
NAGLNP++ VTELRNRHAQGE +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR
Sbjct: 447 NAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVR 506
Query: 524 MILKIDDIVTVR 535
ILKIDD+V R
Sbjct: 507 SILKIDDVVNTR 518
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 594 bits (1531), Expect = e-170, Method: Compositional matrix adjust.
Identities = 298/493 (60%), Positives = 387/493 (78%), Gaps = 3/493 (0%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
TSLGPKGMDKMI T+ GE+II+NDG TIL +M +L P A+MLVE+S +QD+ AGDGTT+V
Sbjct: 37 TSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSV 96
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
V++ GALL LL+ GIHPT+I+D+ AA +VD+L M V LSDR+ LV++AST
Sbjct: 97 VILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAAST 156
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
SL+SK+VSQYS+ LAPLAVDSVL + D + VDL DIR+VKK+GGT+DDTE++ G+V
Sbjct: 157 SLSSKIVSQYSSFLAPLAVDSVLKISDENSKN-VDLNDIRLVKKVGGTIDDTEMIDGVVL 215
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
+ A +AGGPTR E AKI +IQFQISPPK D E +I+V+DY QMD+ILKEER Y+L +
Sbjct: 216 TQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNIC 275
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
KKIK CNVLLIQKSILRDAV DL+LH+L+K IMVVKD+ER+EIEF++K L C PIA+
Sbjct: 276 KKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIAD 335
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGR--TTTVLVRGSNQLVLDEAERSLH 402
I+ F ++L ADLVEE+ KIV++TGI++ T +V++RG+N +++DE ERSLH
Sbjct: 336 IELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLH 395
Query: 403 DALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLA 462
DALCV+RCLV +R LIAGGGAPEIE+SR+L A+++ G++ + + FA ALEVIP TLA
Sbjct: 396 DALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLA 455
Query: 463 ENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECV 522
ENAGLN + +VTELR++H GE+N GI+VR+ TN EE+++QP+LVSTSAITLA+ECV
Sbjct: 456 ENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECV 515
Query: 523 RMILKIDDIVTVR 535
+ IL+IDDI R
Sbjct: 516 KSILRIDDIAFSR 528
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 199/494 (40%), Positives = 314/494 (63%), Gaps = 12/494 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T+LGPKGMDKM+ + G++++TNDGATIL+K+++ PAAKM+VE++K+QD AGDGTTT
Sbjct: 41 TTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTA 100
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VVIAG LL++ LL IHP++I+ AA A ++L +A+ V+ D ++L+K A+T
Sbjct: 101 VVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAAT 160
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPD---LVDLRDIRIVKKLGGTVDDTELVKG 221
S+ K + LLA LAV++V V + K D +VDL +I+ KK G V+++ELV+G
Sbjct: 161 SITGKNAESHKELLAKLAVEAVKQVAE--KKDGKYVVDLDNIKFEKKAGEGVEESELVRG 218
Query: 222 LVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYIL 281
+V DK+ H P RVENAKIA+I + KT+ + I ++ Q+ L++E +
Sbjct: 219 VVIDKEVVHPR-MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLK 277
Query: 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLP 341
M+ I TG NV+ +QK I DL+ HYLAK IM V+ V++ ++E + K
Sbjct: 278 DMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKI 332
Query: 342 IANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSL 401
+ N+ E LG+A++VEE L ++ + G K+ + T+L+RG + V+DE ER+L
Sbjct: 333 VTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN-PKAVTILIRGGTEHVIDEVERAL 391
Query: 402 HDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTL 461
DA+ VV+ ++ ++ GGAPEIEL+ +L +AK + G E + +FA+AL++IP TL
Sbjct: 392 EDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTL 451
Query: 462 AENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAEC 521
AENAGL+ + ++ ++ + H + GI+V +G+ ++LE+ +++PL V AI A+E
Sbjct: 452 AENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEA 511
Query: 522 VRMILKIDDIVTVR 535
MIL+IDD++ +
Sbjct: 512 AIMILRIDDVIAAK 525
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 351 bits (901), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 198/494 (40%), Positives = 313/494 (63%), Gaps = 12/494 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T+LGPKGMDKM+ + G++++TND ATIL+K+++ PAAKM+VE++K+QD AGDGTTT
Sbjct: 41 TTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTA 100
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VVIAG LL++ LL IHP++I+ AA A ++L +A+ V+ D ++L+K A+T
Sbjct: 101 VVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAAT 160
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPD---LVDLRDIRIVKKLGGTVDDTELVKG 221
S+ K + LLA LAV++V V + K D +VDL +I+ KK G V+++ELV+G
Sbjct: 161 SITGKNAESHKELLAKLAVEAVKQVAE--KKDGKYVVDLDNIKFEKKAGEGVEESELVRG 218
Query: 222 LVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYIL 281
+V DK+ H P RVENAKIA+I + KT+ + I ++ Q+ L++E +
Sbjct: 219 VVIDKEVVHPR-MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLK 277
Query: 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLP 341
M+ I TG NV+ +QK I DL+ HYLAK IM V+ V++ ++E + K
Sbjct: 278 DMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKI 332
Query: 342 IANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSL 401
+ N+ E LG+A++VEE L ++ + G K+ + T+L+RG + V+DE ER+L
Sbjct: 333 VTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN-PKAVTILIRGGTEHVIDEVERAL 391
Query: 402 HDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTL 461
DA+ VV+ ++ ++ GGAPEIEL+ +L +AK + G E + +FA+AL++IP TL
Sbjct: 392 EDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTL 451
Query: 462 AENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAEC 521
AENAGL+ + ++ ++ + H + GI+V +G+ ++LE+ +++PL V AI A+E
Sbjct: 452 AENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEA 511
Query: 522 VRMILKIDDIVTVR 535
MIL+IDD++ +
Sbjct: 512 AIMILRIDDVIAAK 525
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 350 bits (898), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/494 (40%), Positives = 312/494 (63%), Gaps = 12/494 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T+LGPKGMDKM+ + G++++TND ATIL+K+++ PAAKM+VE++K+QD AGDGTTT
Sbjct: 41 TTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTA 100
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VVIAG LL++ LL IHP++I AA A ++L +A+ V+ D ++L+K A+T
Sbjct: 101 VVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAAT 160
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPD---LVDLRDIRIVKKLGGTVDDTELVKG 221
S+ K + LLA LAV++V V + K D +VDL +I+ KK G V+++ELV+G
Sbjct: 161 SITGKNAESHKELLAKLAVEAVKQVAE--KKDGKYVVDLDNIKFEKKAGEGVEESELVRG 218
Query: 222 LVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYIL 281
+V DK+ H P RVENAKIA+I + KT+ + I ++ Q+ L++E +
Sbjct: 219 VVIDKEVVHPR-MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLK 277
Query: 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLP 341
M+ I TG NV+ +QK I DL+ HYLAK IM V+ V++ ++E + K
Sbjct: 278 DMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKI 332
Query: 342 IANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSL 401
+ N+ E LG+A++VEE L ++ + G K+ + T+L+RG + V+DE ER+L
Sbjct: 333 VTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN-PKAVTILIRGGTEHVIDEVERAL 391
Query: 402 HDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTL 461
DA+ VV+ ++ ++ GGAPEIEL+ +L +AK + G E + +FA+AL++IP TL
Sbjct: 392 EDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTL 451
Query: 462 AENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAEC 521
AENAGL+ + ++ ++ + H + GI+V +G+ ++LE+ +++PL V AI A+E
Sbjct: 452 AENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEA 511
Query: 522 VRMILKIDDIVTVR 535
MIL+IDD++ +
Sbjct: 512 AIMILRIDDVIAAK 525
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 340 bits (871), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/489 (40%), Positives = 302/489 (61%), Gaps = 10/489 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++LGPKGMDKM+ G+V++TNDG TIL +M V PAAKML+E++K+Q+ GDGTTT
Sbjct: 31 STLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTA 90
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV+AG LL++ LL +HPT++ AA A ++L +A V D++ L K A T
Sbjct: 91 VVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMT 150
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
S+ K + LA + V++V +VVD VD I+I KK G ++DDTEL+KG++
Sbjct: 151 SITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLV 208
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
DK+ +A P +V +AKIA++ I +T+ + I ++D ++ +++E + M+
Sbjct: 209 DKE-RVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMV 267
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
+IKA+G NVL QK I DL+ HYLAK I+ + V++ ++E + K I N
Sbjct: 268 AEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITN 322
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404
I A+ LG A LVEE + ++ + K + T+L+RG+ + V++E R++ DA
Sbjct: 323 IKDLSAQDLGDAGLVEERKISGDSMIFVEECK-HPKAVTMLIRGTTEHVIEEVARAVDDA 381
Query: 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAEN 464
+ VV C + +++GGG+ E+ELS +L +A+ +SG E+ VR+FA+ALEVIP TLAEN
Sbjct: 382 VGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAEN 441
Query: 465 AGLNPLAIVTELRNRHA-QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
AGL+ + I+ ++R HA G +G+NV G + ++ E VV+PL V T AI AAE
Sbjct: 442 AGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTE 501
Query: 524 MILKIDDIV 532
M+L+IDD++
Sbjct: 502 MLLRIDDVI 510
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/489 (40%), Positives = 302/489 (61%), Gaps = 10/489 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++LGPKGMDKM+ G+V++TNDG TIL +M V PAAKML+E++K+Q+ GDGTTT
Sbjct: 37 STLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTA 96
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV+AG LL++ LL +HPT++ AA A ++L +A V D++ L K A T
Sbjct: 97 VVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMT 156
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
S+ K + LA + V++V +VVD VD I+I KK G ++DDTEL+KG++
Sbjct: 157 SITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLV 214
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
DK+ +A P +V +AKIA++ I +T+ + I ++D ++ +++E + M+
Sbjct: 215 DKE-RVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMV 273
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
+IKA+G NVL QK I DL+ HYLAK I+ + V++ ++E + K I N
Sbjct: 274 AEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITN 328
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404
I A+ LG A LVEE + ++ + K + T+L+RG+ + V++E R++ DA
Sbjct: 329 IKDLSAQDLGDAGLVEERKISGDSMIFVEECKH-PKAVTMLIRGTTEHVIEEVARAVDDA 387
Query: 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAEN 464
+ VV C + +++GGG+ E+ELS +L +A+ +SG E+ VR+FA+ALEVIP TLAEN
Sbjct: 388 VGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAEN 447
Query: 465 AGLNPLAIVTELRNRHA-QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
AGL+ + I+ ++R HA G +G+NV G + ++ E VV+PL V T AI AAE
Sbjct: 448 AGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTE 507
Query: 524 MILKIDDIV 532
M+L+IDD++
Sbjct: 508 MLLRIDDVI 516
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 337 bits (865), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 187/483 (38%), Positives = 299/483 (61%), Gaps = 9/483 (1%)
Query: 55 MISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQ 114
M+ + G+++ITNDGATIL +M++ PAAKM+VE+SK+QDA GDGTTT V++G LL +
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 115 CLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQY 174
L+ G+H T+IS+ AA ++L + + + D +L+K A T++ K Y
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAY 120
Query: 175 STLLAPLAVDSVLSVVDPCKPDL-VD-LRDIRIVKKLGGTVDDTELVKGLVFDKKASHAA 232
L+ L V +V S+V+ + L V+ L +I+I K+ GG++DD+EL+ GLV DK+ SH
Sbjct: 121 KEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHP- 179
Query: 233 GGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGC 292
P +VENAKI ++ + KT+++ I ++ QM L +E + M +K+ A+G
Sbjct: 180 NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGA 239
Query: 293 NVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEK 352
NV+ QK I D++ +Y+ K+ I V+ V++ +++ ++K I ++D E
Sbjct: 240 NVVFCQKGI-----DDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTED 294
Query: 353 LGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLV 412
+G A LVEE + GK+ +TG ++ + TVL+ G + V+D + +L+DAL VV ++
Sbjct: 295 VGTAGLVEEKEVRGGKMTYVTGCQN-SKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVI 353
Query: 413 SKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAI 472
++ GGG+ E+ELS +L +A L G E+ V FAEALEVIP LAENAGL+P+ I
Sbjct: 354 EDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDI 413
Query: 473 VTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 532
+ ELR++H +G N+G+NV G++ ++ E +V++PL + T AI A E MIL+IDD+V
Sbjct: 414 MVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVV 473
Query: 533 TVR 535
+
Sbjct: 474 ASK 476
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 337 bits (865), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 196/489 (40%), Positives = 302/489 (61%), Gaps = 10/489 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++LGPKGMDKM+ G+V++TNDG TIL +M V PAAKML+E++K+Q+ GDGTTT
Sbjct: 37 STLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTA 96
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV+AG LL++ LL +HPT++ AA A ++L +A V D++ L K A T
Sbjct: 97 VVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMT 156
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
S+ K + LA + V++V +VVD VD I+I KK G ++DDTEL+KG++
Sbjct: 157 SITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLV 214
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
DK+ +A P +V +AKIA++ I +T+ + I ++D ++ +++E + M+
Sbjct: 215 DKE-RVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMV 273
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
+IKA+G NVL QK I DL+ HYLAK I+ + V++ ++E + K IA
Sbjct: 274 AEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAA 328
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404
I A+ LG A LVEE + ++ + K + T+L+RG+ + V++E R++ DA
Sbjct: 329 IAALSAQDLGDAGLVEERKISGDSMIFVEECKH-PKAVTMLIRGTTEHVIEEVARAVDDA 387
Query: 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAEN 464
+ VV C + +++GGG+ E+ELS +L +A+ +SG E+ VR+FA+ALEVIP TLAEN
Sbjct: 388 VGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAEN 447
Query: 465 AGLNPLAIVTELRNRHA-QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
AGL+ + I+ ++R HA G +G+NV G + ++ E VV+PL V T AI AAE
Sbjct: 448 AGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTE 507
Query: 524 MILKIDDIV 532
M+L+IDD++
Sbjct: 508 MLLRIDDVI 516
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 337 bits (865), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 196/489 (40%), Positives = 302/489 (61%), Gaps = 10/489 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++LGPKGMDKM+ G+V++TNDG TIL +M V PAAKML+E++K+Q+ GDGTTT
Sbjct: 31 STLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTA 90
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV+AG LL++ LL +HPT++ AA A ++L +A V D++ L K A T
Sbjct: 91 VVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMT 150
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
S+ K + LA + V++V +VVD VD I+I KK G ++DDTEL+KG++
Sbjct: 151 SITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLV 208
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
DK+ +A P +V +AKIA++ I +T+ + I ++D ++ +++E + M+
Sbjct: 209 DKE-RVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMV 267
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
+IKA+G NVL QK I DL+ HYLAK I+ + V++ ++E + K IA
Sbjct: 268 AEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAA 322
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404
I A+ LG A LVEE + ++ + K + T+L+RG+ + V++E R++ DA
Sbjct: 323 IAALSAQDLGDAGLVEERKISGDSMIFVEECKH-PKAVTMLIRGTTEHVIEEVARAVDDA 381
Query: 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAEN 464
+ VV C + +++GGG+ E+ELS +L +A+ +SG E+ VR+FA+ALEVIP TLAEN
Sbjct: 382 VGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAEN 441
Query: 465 AGLNPLAIVTELRNRHA-QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
AGL+ + I+ ++R HA G +G+NV G + ++ E VV+PL V T AI AAE
Sbjct: 442 AGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTE 501
Query: 524 MILKIDDIV 532
M+L+IDD++
Sbjct: 502 MLLRIDDVI 510
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/493 (38%), Positives = 307/493 (62%), Gaps = 13/493 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++ GP+GMDKM+ + G++ ITNDGATIL+KM++ PAAK+LV+++K QD DGT T
Sbjct: 48 STYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTA 107
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
V+ +G L+K+ LL +HPT+I KA A+ + +A V ++D D L K A T
Sbjct: 108 VIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMT 167
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPD--LVDLRDIRIVKKLGGTVDDTELVKGL 222
SL+SK V+ +A + V +V V + + D VDL +I+IVKK GG+++DT+LV G+
Sbjct: 168 SLSSKAVAGAREYIADIVVKAVTQVAE-LRGDKWYVDLDNIQIVKKAGGSINDTQLVYGI 226
Query: 223 VFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILG 282
V DK+ H G P R+ENAKIA+I + K +++ I ++D TQM + L EE N I
Sbjct: 227 VVDKEVVH-PGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKE 285
Query: 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPI 342
+ KI ATG NV++ QK I +++ YLAK ++ V+ ++ ++E + + +
Sbjct: 286 KVDKILATGANVIICQKGI-----DEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVV 340
Query: 343 ANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLH 402
+NID + LG+A L+EE +G+ K+V + G K+ ++ ++L+RG + ++DE ER+L
Sbjct: 341 SNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-KSISILIRGGLERLVDETERALR 399
Query: 403 DALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLA 462
DAL V ++ IAGGGA EIE++++L +A + G E+ V ++A ALE + L
Sbjct: 400 DALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILI 459
Query: 463 ENAGLNPLAIVTELRNRHAQGEINS--GINVRKGQITNILEENVVQPLLVSTSAITLAAE 520
ENAG +P+ ++ +LR+ H + E N GI++ GQ ++ ++ V++P LV +AI A E
Sbjct: 460 ENAGFDPIDLLMKLRSTH-ENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATE 518
Query: 521 CVRMILKIDDIVT 533
++L+IDD+V+
Sbjct: 519 AATLVLRIDDVVS 531
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 300/489 (61%), Gaps = 10/489 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T+LGPKGMDKM+ + G++II+NDGATIL +M+V P AKM+VE+SK+QD A GDGTTT
Sbjct: 40 TTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTA 99
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV++G LLKQ LL G+HPTVIS+ A A ++ +A + +D +L K A T
Sbjct: 100 VVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIA--EKSTDDATLRKIALT 157
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVD-PCKPDLVDLRDIRIVKKLGGTVDDTELVKGLV 223
+L+ K + LA L V +V +V + +VD +I++ KK GG+V+DT+ + G+V
Sbjct: 158 ALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIV 217
Query: 224 FDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGM 283
DK+ H+ P V+NAKIA+I + KT+IE + +SD +++ L +E N M
Sbjct: 218 IDKEKVHSK-MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQM 276
Query: 284 IKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIA 343
++KIK +G NV+L QK I D++ HYLAK I V+ V++ ++E + K +
Sbjct: 277 VEKIKKSGANVVLCQKGI-----DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVT 331
Query: 344 NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHD 403
++D LG A+ VEE +GD ++ + G K+ + ++L+RG V+ E ER+L+D
Sbjct: 332 DLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP-KAVSILIRGGTDHVVSEVERALND 390
Query: 404 ALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAE 463
A+ VV + GGGA E EL+ +L +A ++ G E+ + +FA+ALE+IP TLAE
Sbjct: 391 AIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAE 450
Query: 464 NAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
NAG++P+ + +L+ +G I+ G+++ + ++ + VV PL V T A+ A E
Sbjct: 451 NAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVAT 510
Query: 524 MILKIDDIV 532
MIL+IDD++
Sbjct: 511 MILRIDDVI 519
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 330 bits (847), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 199/493 (40%), Positives = 300/493 (60%), Gaps = 15/493 (3%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
TSLGP G+DKM+ G+V +TNDGATIL+ M+V AK++VELSKSQD GDGTT V
Sbjct: 28 TSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGV 87
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAM--AVPVELSDRDSLVKSA 162
VV+AGALL++ LL GIHP I+D +AA A++ L + +V V++ + + L+++A
Sbjct: 88 VVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTA 147
Query: 163 STSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGL 222
T+L SKVV+ +A +AV++VL+V D + D VD I++ K+GG ++DT+L+KG+
Sbjct: 148 KTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRD-VDFELIKVEGKVGGRLEDTKLIKGV 206
Query: 223 VFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILG 282
+ DK SH P +VE+AKIA++ PPK + + V+ + K E+
Sbjct: 207 IVDKDFSHPQ-MPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEE 265
Query: 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPI 342
MI++IK TG N+ + Q D + H L ++ + V+ V EIE I +
Sbjct: 266 MIRQIKETGANLAVCQWGF-----DDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIV 320
Query: 343 ANIDHFRAEKLGHADLVEELSLG--DGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERS 400
AEKLG A LV+E+S G K++ I K+ R T+ +RG N+++++EA+RS
Sbjct: 321 PRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRS 379
Query: 401 LHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYT 460
LHDALCV+R L+ ++ GGGA EI + + A +E+Y +R+FA+ALEVIP
Sbjct: 380 LHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMA 439
Query: 461 LAENAGLNPLAIVTELRNRHAQGEINS--GINVRKGQITNILEENVVQPLLVSTSAITLA 518
LAEN+G+NP+ +TE+R R + E+N GI+ ++ ++V++ L+ I+LA
Sbjct: 440 LAENSGMNPIQTMTEVRARQVK-EVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLA 498
Query: 519 AECVRMILKIDDI 531
+ VRMILKIDDI
Sbjct: 499 TQMVRMILKIDDI 511
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 328 bits (840), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 188/489 (38%), Positives = 307/489 (62%), Gaps = 8/489 (1%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
+SLGP+GMDKM+ + G+++ITNDG TIL +M+V PAAKM+VE+SK+QD+ GDGTTT
Sbjct: 39 SSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTA 98
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
V+IAG LL+Q L++ +HPTVIS+ A+ A V+ ++ + ++ L+K A T
Sbjct: 99 VIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQT 158
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPD-LVDLRDIRIVKKLGGTVDDTELVKGLV 223
SLNSK S LA ++ ++V SV + VD +I++VKK GG +DDT+L+ G++
Sbjct: 159 SLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGII 218
Query: 224 FDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGM 283
DK+ H G P V++AKIA++ + K + + ++ + D + + + L +E N + M
Sbjct: 219 VDKEKVH-PGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREM 277
Query: 284 IKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIA 343
+ KIK+ G NV++ QK I D++ HYL+++ I V+ V++ +++ + K ++
Sbjct: 278 VDKIKSVGANVVITQKGI-----DDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVS 332
Query: 344 NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHD 403
ID + LG A+ VE++ +G+ + +TG K+ + ++LVRG + V+DE ERS+ D
Sbjct: 333 TIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKN-PKAVSILVRGETEHVVDEMERSITD 391
Query: 404 ALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAE 463
+L VV + AGGGA E++ +L ++A+ + G ++ + FA+A+E IP LAE
Sbjct: 392 SLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAE 451
Query: 464 NAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
NAGL+P+ I+ +LR HA+G GINV G+I ++++ V++P+ V AI A E
Sbjct: 452 NAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAI 511
Query: 524 MILKIDDIV 532
MIL+IDD++
Sbjct: 512 MILRIDDVI 520
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 321 bits (822), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 194/489 (39%), Positives = 293/489 (59%), Gaps = 32/489 (6%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++LGPKGMDKM+ G+V++TNDG TIL +M V PAAKML+E++K+Q+ GDGTTT
Sbjct: 37 STLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTA 96
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV+AG LL++ LL +HPT++ AA A ++L +A V D++ L K A T
Sbjct: 97 VVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMT 156
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
S+ K + LA + V++V +VVD VD I+I KK G ++DDTEL+KG++
Sbjct: 157 SITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLV 214
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
DK+ +A P +V +AKIA++ I ++ +LK+ M+
Sbjct: 215 DKE-RVSAQMPKKVTDAKIALLNCAIEETASE---------------MLKD-------MV 251
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
+IKA+G NVL QK I DL+ HYLAK I+ + V++ ++E + K I N
Sbjct: 252 AEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITN 306
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404
I A+ LG A LVEE + ++ + K + T+L+RG+ + V++E R++ DA
Sbjct: 307 IKDLSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDA 365
Query: 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAEN 464
+ VV C + +++GGG+ E+ELS +L +A+ +SG E+ VR+FA+ALEVIP TLAEN
Sbjct: 366 VGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAEN 425
Query: 465 AGLNPLAIVTELRNRHA-QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
AGL+ + I+ ++R HA G +G+NV G + ++ E VV+PL V T AI AAE
Sbjct: 426 AGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTE 485
Query: 524 MILKIDDIV 532
M+L+IDD++
Sbjct: 486 MLLRIDDVI 494
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 321 bits (822), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 194/489 (39%), Positives = 293/489 (59%), Gaps = 32/489 (6%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++LGPKGMDKM+ G+V++TNDG TIL +M V PAAKML+E++K+Q+ GDGTTT
Sbjct: 31 STLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTA 90
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV+AG LL++ LL +HPT++ AA A ++L +A V D++ L K A T
Sbjct: 91 VVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMT 150
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
S+ K + LA + V++V +VVD VD I+I KK G ++DDTEL+KG++
Sbjct: 151 SITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLV 208
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
DK+ +A P +V +AKIA++ I ++ +LK+ M+
Sbjct: 209 DKE-RVSAQMPKKVTDAKIALLNCAIEETASE---------------MLKD-------MV 245
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
+IKA+G NVL QK I DL+ HYLAK I+ + V++ ++E + K I N
Sbjct: 246 AEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITN 300
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404
I A+ LG A LVEE + ++ + K + T+L+RG+ + V++E R++ DA
Sbjct: 301 IKDLSAQDLGDAGLVEERKISGDSMIFVEECKH-PKAVTMLIRGTTEHVIEEVARAVDDA 359
Query: 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAEN 464
+ VV C + +++GGG+ E+ELS +L +A+ +SG E+ VR+FA+ALEVIP TLAEN
Sbjct: 360 VGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAEN 419
Query: 465 AGLNPLAIVTELRNRHA-QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
AGL+ + I+ ++R HA G +G+NV G + ++ E VV+PL V T AI AAE
Sbjct: 420 AGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTE 479
Query: 524 MILKIDDIV 532
M+L+IDD++
Sbjct: 480 MLLRIDDVI 488
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 318 bits (816), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 194/489 (39%), Positives = 293/489 (59%), Gaps = 32/489 (6%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++LGPKGMDKM+ G+V++TNDG TIL +M V PAAKML+E++K+Q+ GDGTTT
Sbjct: 31 STLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTA 90
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV+AG LL++ LL +HPT++ AA A ++L +A V D++ L K A T
Sbjct: 91 VVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMT 150
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
S+ K + LA + V++V +VVD VD I+I KK G ++DDTEL+KG++
Sbjct: 151 SITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLV 208
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
DK+ +A P +V +AKIA++ I ++ +LK+ M+
Sbjct: 209 DKE-RVSAQMPKKVTDAKIALLNCAIEETASE---------------MLKD-------MV 245
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
+IKA+G NVL QK I DL+ HYLAK I+ + V++ ++E + K IA
Sbjct: 246 AEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAA 300
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404
I A+ LG A LVEE + ++ + K + T+L+RG+ + V++E R++ DA
Sbjct: 301 IAALSAQDLGDAGLVEERKISGDSMIFVEECKH-PKAVTMLIRGTTEHVIEEVARAVDDA 359
Query: 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAEN 464
+ VV C + +++GGG+ E+ELS +L +A+ +SG E+ VR+FA+ALEVIP TLAEN
Sbjct: 360 VGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAEN 419
Query: 465 AGLNPLAIVTELRNRHA-QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
AGL+ + I+ ++R HA G +G+NV G + ++ E VV+PL V T AI AAE
Sbjct: 420 AGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTE 479
Query: 524 MILKIDDIV 532
M+L+IDD++
Sbjct: 480 MLLRIDDVI 488
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 318 bits (814), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 292/489 (59%), Gaps = 32/489 (6%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
++LGPKGMDKM+ G+V++TNDG TIL +M V PAAKML+E++K+Q+ GDGTTT
Sbjct: 31 STLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTA 90
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
VV+AG LL++ LL +HPT++ AA A ++L +A V D++ L K A T
Sbjct: 91 VVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMT 150
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
S+ K + LA + V++V +VVD VD I+I KK G ++DDTEL+KG++
Sbjct: 151 SITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLV 208
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
DK+ +A P +V +AKIA++ I ++ +LK+ M+
Sbjct: 209 DKE-RVSAQMPKKVTDAKIALLNCAIEETASE---------------MLKD-------MV 245
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
+IKA+G NVL QK I DL+ HYLAK I+ + V++ ++E + K I N
Sbjct: 246 AEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITN 300
Query: 345 IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404
I A+ LG A LVEE + ++ + K + T+L+RG+ + V++E R++ A
Sbjct: 301 IKDLSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDAA 359
Query: 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAEN 464
+ VV C + +++GGG+ E+ELS +L +A+ +SG E+ VR+FA+ALEVIP TLAEN
Sbjct: 360 VGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAEN 419
Query: 465 AGLNPLAIVTELRNRHA-QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
AGL+ + I+ ++R HA G +G+NV G + ++ E VV+PL V T AI AAE
Sbjct: 420 AGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTE 479
Query: 524 MILKIDDIV 532
M+L+IDD++
Sbjct: 480 MLLRIDDVI 488
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 294 bits (753), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 182/501 (36%), Positives = 289/501 (57%), Gaps = 21/501 (4%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
TSLGP+G+DK++ + GE+ ITNDGATIL++ME+ AK+LV+LSKSQD GDGTT V
Sbjct: 63 TSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGV 122
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD----RDSLVK 160
VV+A ALL Q L L+ GIHP I++ +AA A+ L + S+ RD L++
Sbjct: 123 VVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLR 182
Query: 161 SASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVK 220
+A TSL SK+VS+ A +AV++V++V+D + D VD I++ ++GG++ D++L+
Sbjct: 183 AAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKD-VDFDLIKMQGRVGGSISDSKLIN 241
Query: 221 GLVFDKKASHAAGGPTRV------ENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILK 274
G++ DK SH P V + K+A++ PPK + + +S + ++
Sbjct: 242 GVILDKDFSHPQ-MPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQT 300
Query: 275 EERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFIT 334
E++ MI +K G +V++ Q D + H L ++ + V+ V E+E I
Sbjct: 301 YEQDKFKEMIDDVKKAGADVVICQWGF-----DDEANHLLLQNDLPAVRWVGGQELEHIA 355
Query: 335 KTLNCLPIANIDHFRAEKLGHADLVEELSLGDGK--IVKITGIKDMGRTTTVLVRGSNQL 392
+ N + +KLG + E G K ++ I K+ +T T VRGSN++
Sbjct: 356 ISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET-KTVTCFVRGSNKM 414
Query: 393 VLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAE 452
++DEAER+LHD+LCVVR LV ++ GGGA E+ +S + A G+++Y R FA+
Sbjct: 415 IVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQ 474
Query: 453 ALEVIPYTLAENAGLNPLAIVTELRNRHAQGEI-NSGINVRKGQITNILEENVVQPLLVS 511
AL+ IP TLAEN+GL+P+ ++ L+++ + +I N G++ ++ E VV P +
Sbjct: 475 ALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGK 534
Query: 512 TSAITLAAECVRMILKIDDIV 532
I LA + RMILKID+++
Sbjct: 535 KQQILLATQLCRMILKIDNVI 555
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 164/497 (32%), Positives = 276/497 (55%), Gaps = 23/497 (4%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T+LGP+GMDK+I G+ I+NDGATIL ++V+ PAAK LV+++KSQDA GDGTT+V
Sbjct: 29 TTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSV 88
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD----RDSLVK 160
++A LKQ + G+HP +I A AV+ + +AV V+ D R L K
Sbjct: 89 TLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEK 148
Query: 161 SASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVK 220
A T+L+SK++SQ A + VD+V+ + DL+ L+ I I K GG +++++LV
Sbjct: 149 CAMTALSSKLISQQKAFFAKMVVDAVMML-----DDLLQLKMIGIKKVQGGALEESQLVA 203
Query: 221 GLVFDKKASHAAG--GPTRVENAKIAV--IQFQISPPKTDIEQSI-VVSDYTQMDRILKE 275
G+ F K S+A P + N IA+ ++ ++ K + E + V DY I+
Sbjct: 204 GVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQA---IVDA 260
Query: 276 ERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITK 335
E N + ++KI +G V+L + I D++ Y A + V ++++
Sbjct: 261 EWNILYDKLEKIHHSGAKVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMM 315
Query: 336 TLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLD 395
+++ ++ LG + EE +G + TG +T T+++RG + ++
Sbjct: 316 ACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPK-AKTCTIILRGGAEQFME 374
Query: 396 EAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALE 455
E ERSLHDA+ +VR + ++AGGGA E+ELS+ L +++ + G ++ + ++A+ALE
Sbjct: 375 ETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALE 434
Query: 456 VIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAI 515
+IP L +NAG + I+ +LR RHAQG + G+++ I + E V +P +V +A+
Sbjct: 435 IIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINAL 494
Query: 516 TLAAECVRMILKIDDIV 532
T A+E +I+ +D+ +
Sbjct: 495 TAASEAACLIVSVDETI 511
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/493 (31%), Positives = 283/493 (57%), Gaps = 11/493 (2%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T LGPK M KM+ G +++TNDG IL +++V PAAK ++E+S++QD GDGTT+V
Sbjct: 27 TCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSV 86
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
+++AG +L L +HPTV+ KA + L +++PV+ S+RD+++ ++
Sbjct: 87 IILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINS 146
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSV-VDPCKPDLVDLRDIRIVKKL-GGTVDDTELVKGL 222
S+ +KV+S++S+L +A+D+V +V + +D++ V+K+ GG ++D+ +++G+
Sbjct: 147 SITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGV 206
Query: 223 VFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILG 282
+ +K +H ++N +I ++ + K + + I ++ RIL+ E YI
Sbjct: 207 MINKDVTHPR-MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQ 265
Query: 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPI 342
+ + I +V++ +K I +DL+ HYL ++ I ++ V + + I + +
Sbjct: 266 LCEDIIQLKPDVVITEKGI-----SDLAQHYLMRANITAIRRVRKTDNNRIARACGARIV 320
Query: 343 ANIDHFRAEKLG-HADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSL 401
+ + R E +G A L+E +GD IT KD + T+L+RG+++ +L E ER+L
Sbjct: 321 SRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKD-PKACTILLRGASKEILSEVERNL 379
Query: 402 HDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTL 461
DA+ V R ++ L+ GGGA E+ ++ L +KA++G+E++ R+ A+ALEVIP TL
Sbjct: 380 QDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTL 439
Query: 462 AENAGLNPLAIVTELRNRHAQGEINS-GINVRKGQITNILEENVVQPLLVSTSAITLAAE 520
+N G + + ++T LR +H Q + G+N G + ++ E + +PL V A E
Sbjct: 440 IQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVE 499
Query: 521 CVRMILKIDDIVT 533
++L+IDDIV+
Sbjct: 500 TAVLLLRIDDIVS 512
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 173/510 (33%), Positives = 274/510 (53%), Gaps = 34/510 (6%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
+SLGP G+DKM+ G+V ITNDGATIL +EV PAAK+L EL+ QD GDGTT+V
Sbjct: 28 SSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSV 87
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSAS 163
V+IA LLK L+ IHPT + A AV ++ + + + RD L+ +A
Sbjct: 88 VIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAK 147
Query: 164 TSLNSKVVSQYSTLLAPLAVDSVLSVV------DPCKPDLVDLRDIRIVKKLGGTVDDTE 217
TS++SKV+ A L VD+VL++ P P + I ++K G + ++
Sbjct: 148 TSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYP----VNSINVLKAHGRSQMESM 203
Query: 218 LVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEER 277
L+ G + + G P R+ NAKIA + F + K + +V++D ++D+I + E
Sbjct: 204 LINGYALNCVVG-SQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRES 262
Query: 278 NYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTL 337
+ I+KI ATG NV+L I D+ L Y ++ M V+ V + +++ I K
Sbjct: 263 DITKERIQKILATGANVILTTGGI-----DDMCLKYFVEAGAMAVRRVLKRDLKRIAKAS 317
Query: 338 NCL---PIANIDH---FRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTT-TVLVRGSN 390
+AN++ F A LG A+ V + + D +++ I K RT+ +V++RG+N
Sbjct: 318 GATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK--ARTSASVILRGAN 375
Query: 391 QLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSF 450
+ DE ERSLHDALCVV+ ++ + ++ GGGA E LS L +A ++ E+ + F
Sbjct: 376 DFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEF 435
Query: 451 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINS--------GINVRKGQITNILEE 502
A +L VIP TLA NA + +V +LR H + ++N G+++ G+ + +
Sbjct: 436 ARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQA 495
Query: 503 NVVQPLLVSTSAITLAAECVRMILKIDDIV 532
V +P +V ++ A E IL+IDD++
Sbjct: 496 GVFEPTIVKVKSLKFATEAAITILRIDDLI 525
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/498 (32%), Positives = 271/498 (54%), Gaps = 25/498 (5%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVV 105
+LGP G D +I T++ + I+NDGATIL ++V+ PAAK LV++S++QDA GDGTT+V
Sbjct: 43 TLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVT 102
Query: 106 VIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPV---ELSDRDSLVKSA 162
++AG L+K+ L GI +I KA AV+ + +AV + + S R+ L + A
Sbjct: 103 ILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCA 162
Query: 163 STSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRD--IRIVKKLGGTVDDTELVK 220
T+++SK++ + + VD+VLS+ D DL D I I K GG ++++ +
Sbjct: 163 RTAMSSKLIHNNADFFVKMCVDAVLSL------DRNDLDDKLIGIKKIPGGAMEESLFIN 216
Query: 221 GLVFDKKASHAA--GGPTRVENAKIAV--IQFQISPPKTDIEQSIV-VSDYTQMDRILKE 275
G+ F K S+A P + N KI ++ ++ K + E + V DY I+
Sbjct: 217 GVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDY---QAIVDA 273
Query: 276 ERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITK 335
E I +++++ TG N++L + I DL+ + A I V D++ + +
Sbjct: 274 EWQLIFEKLRQVEETGANIVLSKLPI-----GDLATQFFADRNIFCAGRVSADDMNRVIQ 328
Query: 336 TLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLD 395
+ + + E LG L EE+ +G + G +T T+L+RG + V+
Sbjct: 329 AVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCP-QAKTCTLLLRGGAEQVIA 387
Query: 396 EAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALE 455
E ERSLHDA+ +V+ + + ++AGGGA E+E+S+ L ++K ++G ++ + +FA+ALE
Sbjct: 388 EVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALE 447
Query: 456 VIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAI 515
VIP L ENAG + + I+ +LR H++GE G+ I + + V +P LV +A+
Sbjct: 448 VIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINAL 507
Query: 516 TLAAECVRMILKIDDIVT 533
A E +IL +D+ +T
Sbjct: 508 NSATEATNLILSVDETIT 525
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 158/494 (31%), Positives = 265/494 (53%), Gaps = 19/494 (3%)
Query: 45 TSLGPKGMDKMI--STASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTT 102
++LGPKGMDK++ S +++TNDGATIL + V PAAK+LV++S+ QD GDGTT
Sbjct: 28 STLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTT 87
Query: 103 TVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAV---PVELSDRDSLV 159
+V V+A LL++ L++ IHP I +A A L AV E+ R L+
Sbjct: 88 SVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLM 147
Query: 160 KSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELV 219
A T+L+SK+++ + LAV++VL + +L I ++KKLGG++ D+ L
Sbjct: 148 NIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG-----NLEAIHVIKKLGGSLADSYLD 202
Query: 220 KGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYT-QMDRILKEERN 278
+G + DKK P R+ENAKI + + K I S V D T ++ I E+
Sbjct: 203 EGFLLDKKI--GVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKE 260
Query: 279 YILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338
+ +++I G N I R + + + +M ++ + +E +
Sbjct: 261 KMKEKVERILKHGINCF-----INRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTG 315
Query: 339 CLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAE 398
+ DH KLG L+EE+ +G+ K++ +G+ +G T+++RG+ Q +LDEAE
Sbjct: 316 GEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVA-LGEACTIVLRGATQQILDEAE 374
Query: 399 RSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIP 458
RSLHDALCV+ V + GGG E+ ++ + A G E + S+A+AL ++P
Sbjct: 375 RSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLP 434
Query: 459 YTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLA 518
+A+NAG + +V +LR H++G+ +G+++++G I ++ + + V + A
Sbjct: 435 TIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSA 494
Query: 519 AECVRMILKIDDIV 532
AE +IL++D+I+
Sbjct: 495 AEAAEVILRVDNII 508
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 228 bits (580), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 161/497 (32%), Positives = 264/497 (53%), Gaps = 19/497 (3%)
Query: 45 TSLGPKGMDKMISTASGEV-IITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTT 103
++LGPKGMDK++ +AS ++TNDGATIL + + PAAK+LV +SK QD GDGTT+
Sbjct: 35 STLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTS 94
Query: 104 VVVIAGALLKQCLILL-SSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD---RDSLV 159
V V++ LL++ L+ S IHP I + A+ A+D LT AV R+ L+
Sbjct: 95 VTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLI 154
Query: 160 KSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELV 219
A T+L+SK++SQ A LA +++L + +L I+I+K LGG + D+ L
Sbjct: 155 HIAKTTLSSKILSQDKDHFAELATNAILRLKGS-----TNLEHIQIIKILGGKLSDSFLD 209
Query: 220 KGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYT-QMDRILKEERN 278
+G + KK + P R+ENAKI + + K I + D T ++ ++ K ER
Sbjct: 210 EGFILAKKFGN--NQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAERE 267
Query: 279 YILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338
+ I KI G N I R + D I ++ + + +E +
Sbjct: 268 KMKNKIAKISKFGINTF-----INRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTG 322
Query: 339 CLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAE 398
++ D KLG D++EE+ LG+ +K +G K G T+++RG+ LDEAE
Sbjct: 323 GEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCK-AGEACTIVLRGATDQTLDEAE 381
Query: 399 RSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIP 458
RSLHDAL V+ + + GGG E+ +S+ + A+ + G + V +FA AL +P
Sbjct: 382 RSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLP 441
Query: 459 YTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLA 518
LA+NAG + +V++LR+ G SG+++ G I ++ + +V+ + + ++ A
Sbjct: 442 TILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSA 501
Query: 519 AECVRMILKIDDIVTVR 535
+E ++L++D+I+ R
Sbjct: 502 SEAAEVLLRVDNIIRAR 518
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 156/513 (30%), Positives = 271/513 (52%), Gaps = 30/513 (5%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
+SLGP G+DKM+ G+ +TNDGATIL+ ++V PA K+LVEL++ QD GDGTT+V
Sbjct: 42 SSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSV 101
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLT-AMAVPVELSDRDSLVKSAS 163
V+IA LLK+ L+ + IHPT I A A+ + ++ V+ +++L+ A
Sbjct: 102 VIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAK 161
Query: 164 TSLNSKVVSQYSTLLAPLAVDSVLSV-VDPCKPDL-VDLRDIRIVKKLGGTVDDTELVKG 221
TS++SK++ S + + VD++L+V K ++ ++ + ++K G + ++ LV G
Sbjct: 162 TSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPG 221
Query: 222 LVFDKKASHAAGGPTRVE--NAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNY 279
+ + A P R+ N KIA + + + + I + D Q+++I K E
Sbjct: 222 YALNCTVASQA-MPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGI 280
Query: 280 ILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339
+L +KKI G V+L K I DL L ++KIM V+ +++++ I +
Sbjct: 281 VLERVKKIIDAGAQVVLTTKGI-----DDLCLKEFVEAKIMGVRRCKKEDLRRIARATGA 335
Query: 340 LPIANIDH------FRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLV 393
++++ + F + LG D V + D + + I G ++++++RG+N
Sbjct: 336 TLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHS-SSSIILRGANDYS 394
Query: 394 LDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEA 453
LDE ERSLHD+L VV+ + ++ GGG E L+ L +A + E+ + FA A
Sbjct: 395 LDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAA 454
Query: 454 LEVIPYTLAENAGLNPLAIVTELRNRHAQGEI------------NSGINVRKGQITNILE 501
L +IP TLA NA + +V +LR+ HA ++ N G+++ +G+I + +
Sbjct: 455 LLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIH 514
Query: 502 ENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534
V++P + ++ A E IL+ID ++TV
Sbjct: 515 AGVLEPTISKVKSLKSALEACVAILRIDTMITV 547
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 265/498 (53%), Gaps = 21/498 (4%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T+ GP GM+KM+ ++ +TND ATIL ++EV PAAKM+V S Q+ GDGT V
Sbjct: 29 TAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFV 88
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
+V AGALL+ LL G+ + + + A A ++L + + RD V S+
Sbjct: 89 LVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRD--VDEVSS 146
Query: 165 SLNSKVVS-QYST--LLAPLAVDSVLSVVDPCKPD--LVDLRDIRIVKKLGGTVDDTELV 219
L++ V+S QY LA L + +S+ PD ++ +IR+ K LG V + ++
Sbjct: 147 LLHTSVMSKQYGNEVFLAKLIAQACVSIF----PDSGHFNVDNIRVCKILGSGVHSSSVL 202
Query: 220 KGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNY 279
G+VF K+ G T V++AKIAV T+ + ++++ ++ K E N
Sbjct: 203 HGMVFKKETE---GDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENL 259
Query: 280 ILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339
+ +K I TG NV+ + V D++LHY K IM+V+ + ++ + KT+
Sbjct: 260 MDAQVKAIADTGANVV-----VTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGA 314
Query: 340 LPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAER 399
+ ++ E++GH D V +GD ++V K+ G +T+++RGS ++D+ ER
Sbjct: 315 TALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIER 374
Query: 400 SLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPY 459
++ D + + L + L+ GGGA EIEL++Q+ ++ + G+E+Y ++ FAEA E IP
Sbjct: 375 AVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPR 434
Query: 460 TLAENAGLNPLAIVTELRNRHAQGEINSGINVRKG--QITNILEENVVQPLLVSTSAITL 517
LAEN+G+ ++++L H +G N G+++ + ++LE V+ L AI L
Sbjct: 435 ALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKL 494
Query: 518 AAECVRMILKIDDIVTVR 535
A +L++D I+ +
Sbjct: 495 ATNAAVTVLRVDQIIMAK 512
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/461 (29%), Positives = 248/461 (53%), Gaps = 21/461 (4%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T+LGPKG KM+ + +G++ +T DG +L++M++ P A ++ +++ +QD GDGTT+
Sbjct: 28 TNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSN 87
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
V+I G LLKQ + +S G+HP +I++ A A+ L + V E+ DR++L+ A T
Sbjct: 88 VLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-DRETLIDVART 146
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
SL +KV ++ + +L VDS+L++ +P +DL + I++ + DT L++GLV
Sbjct: 147 SLRTKVHAELADVLTEAVVDSILAIKKQDEP--IDLFMVEIMEMKHKSETDTSLIRGLVL 204
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
D A H RVE+A I + KT++ + ++++K ER +I +
Sbjct: 205 DHGARH-PDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRV 263
Query: 285 KKI---KATGCN------VLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITK 335
KKI K C V++ QK I SL LAK I+ ++ +R +E +T
Sbjct: 264 KKIIELKKKVCGDSDKGFVVINQKGI-----DPFSLDALAKEGIIALRRAKRRNMERLTL 318
Query: 336 TLNCLPIANIDHFRAE-KLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVL 394
+ + ++D + LGHA V E +LG+ K I + R+ T+L++G N+ L
Sbjct: 319 ACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNN-PRSVTLLIKGPNKHTL 376
Query: 395 DEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEAL 454
+ + ++ D L V+ + ++ G GA E+ ++ L + ++ G + V++FA+AL
Sbjct: 377 TQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADAL 436
Query: 455 EVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQ 495
+IP LA+N+G + + +++ H++ G+++ G+
Sbjct: 437 LIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGE 477
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 198 bits (503), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 153/513 (29%), Positives = 256/513 (49%), Gaps = 38/513 (7%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T+LGPKG KM+ +G + +T DG +L +M++ P A ++ + +QD GDGTTTV
Sbjct: 35 TNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTV 94
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVP-VELS-DRDSLVKSA 162
V + G LL+Q + G+HP +I+D A ++ L + LS DR+ L++ A
Sbjct: 95 VCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVA 154
Query: 163 STSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGL 222
+SL +KV + + +L P+ D+VLSV D + D +DL + I++ + DT +KGL
Sbjct: 155 RSSLLTKVDADLTEVLTPIVTDAVLSVYD-AQADNLDLHMVEIMQMQHLSPKDTTFIKGL 213
Query: 223 VFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILG 282
V D H PTRV+NA + ++ + KT++ S Q D++ ER ++
Sbjct: 214 VLDHGGRH-PDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDA 272
Query: 283 MIKKI---KATGCN-------VLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEF 332
+KKI K C V++ QK I +SL AK I+ ++ +R +E
Sbjct: 273 KLKKIIDLKNEVCGMDPDKGFVIINQKGI-----DPMSLDVFAKHNILALRRAKRRNMER 327
Query: 333 ITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQL 392
+ +++ + LG + LV + ++G+ K +T D ++ T+L++GS
Sbjct: 328 LQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTD-PKSCTILIKGSTHY 386
Query: 393 VLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSR--------QLGAWAKALSGMER 444
L + + ++ D L V ++ + +I G GA I LSR +LGA K +G+E
Sbjct: 387 ALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIE- 445
Query: 445 YCVRSFAEALEVIPYTLAENAGLNPLAIVT----ELRNRHAQGEINS-GINVRKGQITNI 499
+FAEAL VIP TL +N+G +PL ++ EL + E G+++ G +
Sbjct: 446 ----AFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDP 501
Query: 500 LEENVVQPLLVSTSAITLAAECVRMILKIDDIV 532
E + V +AIT A +L D+++
Sbjct: 502 TIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 143/511 (27%), Positives = 258/511 (50%), Gaps = 26/511 (5%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
TS+GP G +K+I G++IITND AT+L +++++ PA K+LV ++ Q GDGT V
Sbjct: 44 TSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLV 103
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVP--VELSDRDSLVKSA 162
+++AG LL L+S G+ I + A + L M V + +D++ L+K
Sbjct: 104 MILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMI 163
Query: 163 STSLNSKVVSQYSTL--LAPLAVDSVLSVVDPCKP-DLVDLRDIRIVKKLGGTVDDTELV 219
++SK L L AV VL V ++ IR+VK +GG++ ++ ++
Sbjct: 164 KPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVI 223
Query: 220 KGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNY 279
KG+VF+++ + + K+AV + T+ + ++++ + +M K E
Sbjct: 224 KGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQ 283
Query: 280 ILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339
I M+K+I G + + V +L+LHYL + I+V+K + E+ + +
Sbjct: 284 IDAMMKEIADMGVECI-----VAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGA 338
Query: 340 LPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIK-DMGRTTTVLVRGSNQLVLDEAE 398
P+ + E+LG + V+ + +G ++ + ++ RT+T+++RG+ Q LD+ E
Sbjct: 339 TPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIE 398
Query: 399 RSLHDALCVVRCLV--SKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEV 456
R++ D + V+ L+ S L+ G GA EIEL ++ + + G+ + ++ FA A EV
Sbjct: 399 RAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEV 458
Query: 457 IPYTLAENAGLNPLAIVTELRNRHAQGE--------INSGINVRKGQ----ITNILEENV 504
+P TLAE AGL+ ++ L H E + G+++ G+ + +I EEN+
Sbjct: 459 VPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDI-DGESDEGVKDIREENI 517
Query: 505 VQPLLVSTSAITLAAECVRMILKIDDIVTVR 535
L AI +A E +L ID I+ +
Sbjct: 518 YDMLATKKFAINVATEAATTVLSIDQIIMAK 548
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 173/319 (54%), Gaps = 15/319 (4%)
Query: 45 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
T LGPK M KM+ G +++TNDG IL +++V PAAK ++ELS++QD GDGTTTV
Sbjct: 37 TCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTV 96
Query: 105 VVIAGALLKQCL-ILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAS 163
+++AG +L QC L+ IHP +I L KA A++V+ ++ PV++ + ++ K
Sbjct: 97 IILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQ 156
Query: 164 TSLNSKVVSQYSTLLAPLAVDSVLSVVDPC------KPDL-VDL-RDIRIVKKLGGTVDD 215
S+ +K V +S + LA+D+V +V +P+ +D+ R +R+ K GG V D
Sbjct: 157 ASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLD 216
Query: 216 TELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKE 275
+ ++KG++ +K H +EN ++ ++ + K + + +I + +RIL+
Sbjct: 217 SRVLKGVLLNKDVVHPKMS-RHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQI 275
Query: 276 ERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITK 335
E + M ++I A +++ +K V+DL+ HYL K V++ V++ + I +
Sbjct: 276 EEEQVQLMCEQILAVRPTLVITEK-----GVSDLAQHYLLKGGCSVLRRVKKSDNNRIAR 330
Query: 336 TLNCLPIANIDHFRAEKLG 354
+ ++ + +G
Sbjct: 331 VTGATIVNRVEDLKESDVG 349
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 102/154 (66%)
Query: 380 RTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKAL 439
+ T+++RG ++ +L+E +R+L DA+ V R ++ L GGGA E+ +S +L AK L
Sbjct: 431 KACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQL 490
Query: 440 SGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNI 499
G++++ ++ A+A+E IP TL +NAG +P+ ++++LR +HAQG +GI+ KG+I ++
Sbjct: 491 EGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDM 550
Query: 500 LEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+ + +P ++ ++ A E ++L++DDIV+
Sbjct: 551 VSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVS 584
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
Query: 221 GLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYI 280
G+V DK+ H+ P V+NAKIA+I + KT+IE + +SD +++ L +E N
Sbjct: 3 GIVIDKEKVHSKM-PDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTF 61
Query: 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340
M++KIK +G NV+L QK I D++ HYLAK I V+ V++ ++E + K
Sbjct: 62 KQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAK 116
Query: 341 PIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD 377
+ ++D LG A+ VEE +GD ++ + G K+
Sbjct: 117 IVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 91/159 (57%), Gaps = 6/159 (3%)
Query: 219 VKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERN 278
+ G++ DK+ H G P V++AKIA++ + K + + ++ + D + + + L +E N
Sbjct: 1 MNGIIVDKEKVHP-GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEEN 59
Query: 279 YILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338
+ M+ KIK+ G NV++ QK I D++ HYL+++ I V+ V++ +++ + K
Sbjct: 60 MLREMVDKIKSVGANVVITQKGI-----DDMAQHYLSRAGIYAVRRVKKSDMDKLAKATG 114
Query: 339 CLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD 377
++ ID + LG A+ VE++ +G+ + +TG K+
Sbjct: 115 ASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGSKN 153
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGP+G + ++ G IT DG T+ ++E+ A++L E++ + AGDGT
Sbjct: 29 TLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++++ L +++G +P + + KA AV+ + A+A+PVE DR ++ +
Sbjct: 89 TTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE--DRKAIEEV 146
Query: 162 ASTSLNSKVVSQ 173
A+ S N V +
Sbjct: 147 ATISANDPEVGK 158
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 19/162 (11%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGA---W 435
G + V + + L E + DAL R V + ++ GGG + L R + A
Sbjct: 372 GGVAVIRVGAATETELKEKKHRFEDALNATRAAVEE-GIVPGGG---VTLLRAISAVEEL 427
Query: 436 AKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIV----TELRN-RHAQGEINSGIN 490
K L G E + ALE +AENAG IV E +N R+ G N
Sbjct: 428 IKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRY-------GFN 480
Query: 491 VRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 532
G+ +++E +V P V+ SA+ AA +IL + +V
Sbjct: 481 AATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVV 522
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNKDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 30 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 89
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 90 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPC--SDSKAIAQV 147
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 148 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 192
Query: 222 LVFDK 226
+ FD+
Sbjct: 193 MQFDR 197
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 30 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 89
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 90 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPC--SDSKAIAQV 147
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 148 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 192
Query: 222 LVFDK 226
+ FD+
Sbjct: 193 MQFDR 197
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 374 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 431
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 432 QNEDQNVGIKVALRAMEAPLRQIVLNCGEKPSVVANTVKG----GDGNYGYNAATEEYGN 487
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 488 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 522
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP--CSDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP--CSDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 30 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 89
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 90 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPC--SDSKAIAQV 147
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 148 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 192
Query: 222 LVFDK 226
+ FD+
Sbjct: 193 MQFDR 197
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 374 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 431
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 432 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 487
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 488 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 522
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ + G IT DG ++ ++E+ A+M+ E++ + AAGDGT
Sbjct: 29 TLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++ + L +++G++P + + KA AV+ L A++VP SD ++ +
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPC--SDSKAIAQV 146
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
+ S NS L+A A+D V K ++ + D G D+ ++V+G
Sbjct: 147 GTISANSD--ETVGKLIAE-AMDKV------GKEGVITVEDGT------GLQDELDVVEG 191
Query: 222 LVFDK 226
+ FD+
Sbjct: 192 MQFDR 196
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V + ++ + E + + DAL R V + ++AGGG I ++ +L A +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAV-EEGVVAGGGVALIRVASKL-ADLRG 430
Query: 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498
+ + ++ A+E + N G P + ++ G+ N G N + N
Sbjct: 431 QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGN 486
Query: 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533
+++ ++ P V+ SA+ AA +++ + +VT
Sbjct: 487 MIDMGILDPTKVTRSALQYAASVAGLMITTECMVT 521
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + ++ G ITNDG +I ++E+ P A+++ E++K D AGDGT
Sbjct: 29 TLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGT 88
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDR 155
TT V+A AL+++ L +++G +P + + KA + L A VE ++
Sbjct: 89 TTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQ 142
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 7/144 (4%)
Query: 389 SNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVR 448
+ ++ L E + + DA+ + V + ++AGGG ++ + L L G E
Sbjct: 382 ATEVELKERKHRIEDAVRNAKAAV-EEGIVAGGGVTLLQAAPTLDELK--LEGDEATGAN 438
Query: 449 SFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPL 508
ALE +A N+GL P + ++RN A G+N + G ++L V P+
Sbjct: 439 IVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPA----GHGLNAQTGVYEDLLAAGVADPV 494
Query: 509 LVSTSAITLAAECVRMILKIDDIV 532
V+ SA+ AA + L + +V
Sbjct: 495 KVTRSALQNAASIAGLFLTTEAVV 518
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 21/185 (11%)
Query: 46 SLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGT 101
+LGPKG + +I + G IT DG ++ ++E+ A+M+ E++ + AGDGT
Sbjct: 30 TLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGT 89
Query: 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKS 161
TT V+A A++++ L +++G++P + + A V+ + + A PV S + V +
Sbjct: 90 TTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGT 149
Query: 162 ASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKG 221
S + S + Q + + + + V++V + G + E+V+G
Sbjct: 150 ISANGESFIGQQIAEAMQRVGNEGVITVEENK-----------------GMETEVEVVEG 192
Query: 222 LVFDK 226
+ FD+
Sbjct: 193 MQFDR 197
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 379 GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438
G + V G ++ + E + + DAL R V + ++ GG A L AK
Sbjct: 374 GGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVA--------LVQGAKV 425
Query: 439 LSGM------ERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVR 492
L G+ + + ALE +AENAG++ + ++R + G N +
Sbjct: 426 LEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKA---FGFNAQ 482
Query: 493 KGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 532
+ ++ + V+ P V +A+ AA +++ + ++
Sbjct: 483 TEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMI 522
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 61 GEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCL 116
G ITNDG +I ++E+ P A+++ E++K D AGDGTTT V+A AL+++ L
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 117 ILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDR 155
+++G +P + + KA + L A VE ++
Sbjct: 62 RNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQ 100
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 7/144 (4%)
Query: 389 SNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVR 448
+ ++ L E + + DA+ + V + ++AGGG ++ + L L G E
Sbjct: 340 ATEVELKERKHRIEDAVRNAKAAV-EEGIVAGGGVTLLQAAPTLDELK--LEGDEATGAN 396
Query: 449 SFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPL 508
ALE +A N+GL P + ++RN A G+N + G ++L V P+
Sbjct: 397 IVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPA----GHGLNAQTGVYEDLLAAGVADPV 452
Query: 509 LVSTSAITLAAECVRMILKIDDIV 532
V+ SA+ AA + L + +V
Sbjct: 453 KVTRSALQNAASIAGLFLTTEAVV 476
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 213 VDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRI 272
++D+ +++G++ +K +H ++N +I ++ + K + + I ++ RI
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRY-IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 59
Query: 273 LKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEF 332
L+ E YI + + I +V++ +K I +DL+ HYL ++ + ++ V + +
Sbjct: 60 LQMEEEYIHQLCEDIIQLKPDVVITEKGI-----SDLAQHYLMRANVTAIRRVRKTDNNR 114
Query: 333 ITKTLNCLPIANIDHFRAEKLGH-ADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSN 390
I + ++ + R + +G A L+E +GD IT KD + T+L+RG++
Sbjct: 115 IARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKD-PKACTILLRGAS 172
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 53 DKMISTASGEVIITNDGATILNKMEVLQPA--AKMLVELSKSQDAAAGDGTTTVVVIAGA 110
D M+ GE IITN G+ +LN++++ Q K+ ++ +D + D + VV I
Sbjct: 798 DYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVK 857
Query: 111 LLKQCL 116
+K+ +
Sbjct: 858 SIKESV 863
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,245,640
Number of Sequences: 62578
Number of extensions: 490096
Number of successful extensions: 1574
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1344
Number of HSP's gapped (non-prelim): 71
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)