Query 009431
Match_columns 535
No_of_seqs 149 out of 1555
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 13:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02342 chap_CCT_delta T-com 100.0 4E-108 9E-113 884.8 58.1 515 20-535 2-517 (517)
2 cd03338 TCP1_delta TCP-1 (CTT 100.0 1E-106 3E-111 875.1 57.8 513 21-534 2-515 (515)
3 TIGR02339 thermosome_arch ther 100.0 2E-106 5E-111 873.0 58.0 507 21-534 10-519 (519)
4 TIGR02344 chap_CCT_gamma T-com 100.0 5E-106 1E-110 871.6 58.5 507 21-534 10-521 (525)
5 TIGR02347 chap_CCT_zeta T-comp 100.0 1E-105 3E-110 864.5 60.1 506 21-535 10-526 (531)
6 KOG0361 Chaperonin complex com 100.0 7E-108 1E-112 791.9 37.4 508 15-534 5-522 (543)
7 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-105 3E-110 867.8 58.0 508 21-535 2-526 (527)
8 cd03343 cpn60 cpn60 chaperonin 100.0 3E-105 6E-110 865.7 58.0 508 21-535 9-517 (517)
9 TIGR02343 chap_CCT_epsi T-comp 100.0 3E-105 6E-110 863.8 58.0 506 21-534 21-531 (532)
10 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6E-105 1E-109 862.5 58.7 504 21-535 10-520 (522)
11 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1E-104 2E-109 860.8 58.3 505 21-533 17-526 (526)
12 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2E-104 4E-109 856.3 59.5 502 21-535 7-514 (517)
13 PTZ00212 T-complex protein 1 s 100.0 4E-104 9E-109 855.8 57.8 501 21-534 16-525 (533)
14 TIGR02345 chap_CCT_eta T-compl 100.0 6E-104 1E-108 853.5 56.8 504 21-535 12-520 (522)
15 TIGR02340 chap_CCT_alpha T-com 100.0 3E-103 6E-108 850.8 59.2 508 21-535 6-530 (536)
16 TIGR02341 chap_CCT_beta T-comp 100.0 3E-103 7E-108 845.3 59.3 502 21-535 8-515 (519)
17 KOG0358 Chaperonin complex com 100.0 9E-105 2E-109 768.9 35.8 525 8-535 9-534 (534)
18 TIGR02346 chap_CCT_theta T-com 100.0 3E-102 7E-107 840.1 58.6 503 22-534 12-519 (531)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1E-101 2E-106 827.7 54.7 477 21-535 6-483 (484)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.1E-99 2E-104 812.3 51.8 465 21-533 10-479 (480)
21 cd03341 TCP1_theta TCP-1 (CTT 100.0 9.8E-97 2E-101 787.9 52.9 465 23-535 4-472 (472)
22 cd00309 chaperonin_type_I_II c 100.0 2.8E-96 6E-101 786.2 53.2 462 22-533 3-464 (464)
23 COG0459 GroL Chaperonin GroEL 100.0 3.6E-96 8E-101 780.0 49.0 501 21-535 5-514 (524)
24 KOG0363 Chaperonin complex com 100.0 5.5E-97 1E-101 711.7 36.8 508 15-535 3-519 (527)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.4E-93 5.3E-98 770.4 52.7 482 39-535 1-484 (485)
26 PRK12849 groEL chaperonin GroE 100.0 2.8E-90 6E-95 744.6 52.6 459 21-535 4-523 (542)
27 PRK00013 groEL chaperonin GroE 100.0 3.3E-90 7.2E-95 744.0 51.8 461 21-535 4-524 (542)
28 PTZ00114 Heat shock protein 60 100.0 2.2E-89 4.8E-94 741.2 52.8 460 21-534 16-539 (555)
29 PRK12851 groEL chaperonin GroE 100.0 1.9E-89 4.1E-94 738.8 51.0 460 21-535 5-524 (541)
30 cd03344 GroEL GroEL_like type 100.0 4.8E-89 1E-93 733.3 51.8 456 21-533 2-519 (520)
31 KOG0362 Chaperonin complex com 100.0 1.2E-89 2.6E-94 685.8 42.1 499 21-535 19-521 (537)
32 PRK12850 groEL chaperonin GroE 100.0 1.4E-88 3E-93 732.6 52.0 461 20-535 4-524 (544)
33 PRK12852 groEL chaperonin GroE 100.0 1.5E-88 3.2E-93 734.1 51.8 461 20-535 4-525 (545)
34 KOG0364 Chaperonin complex com 100.0 2.8E-91 6.1E-96 686.6 27.4 513 14-534 3-520 (527)
35 TIGR02348 GroEL chaperonin Gro 100.0 2.1E-88 4.4E-93 729.8 51.2 458 21-534 3-521 (524)
36 KOG0360 Chaperonin complex com 100.0 1E-89 2.3E-94 681.6 30.3 515 11-533 3-534 (545)
37 CHL00093 groEL chaperonin GroE 100.0 4.4E-87 9.5E-92 720.2 49.5 464 21-535 4-525 (529)
38 PRK14104 chaperonin GroEL; Pro 100.0 8.3E-86 1.8E-90 710.4 51.3 460 20-534 4-524 (546)
39 PLN03167 Chaperonin-60 beta su 100.0 1.9E-86 4.1E-91 719.0 45.9 468 21-535 58-581 (600)
40 KOG0359 Chaperonin complex com 100.0 1.2E-82 2.6E-87 624.8 27.1 500 21-534 11-514 (520)
41 KOG0357 Chaperonin complex com 100.0 1.7E-67 3.6E-72 503.7 22.3 379 13-534 9-395 (400)
42 KOG0356 Mitochondrial chaperon 100.0 5E-60 1.1E-64 480.5 33.3 463 19-533 16-535 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 3.2E-39 6.9E-44 318.2 26.4 234 171-418 16-257 (261)
44 cd03333 chaperonin_like chaper 100.0 1.7E-35 3.7E-40 284.0 23.9 208 156-414 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.8 1.1E-20 2.3E-25 211.4 16.0 239 173-425 332-577 (1598)
46 PF01248 Ribosomal_L7Ae: Ribos 70.0 7.6 0.00016 31.7 4.3 58 280-340 20-77 (95)
47 PRK13600 putative ribosomal pr 61.1 25 0.00055 28.3 5.5 54 280-334 18-71 (84)
48 TIGR03677 rpl7ae 50S ribosomal 60.1 24 0.00052 30.3 5.7 55 282-339 33-87 (117)
49 PRK13602 putative ribosomal pr 58.4 27 0.00058 27.9 5.3 56 281-340 17-72 (82)
50 PRK04175 rpl7ae 50S ribosomal 58.2 26 0.00056 30.4 5.6 57 281-340 36-92 (122)
51 PRK07714 hypothetical protein; 53.7 37 0.0008 28.2 5.6 55 282-340 25-79 (100)
52 PF02579 Nitro_FeMo-Co: Dinitr 52.7 30 0.00064 27.8 4.9 42 283-331 45-86 (94)
53 PRK13601 putative L7Ae-like ri 51.8 42 0.0009 26.9 5.4 55 282-340 15-69 (82)
54 COG1358 RPL8A Ribosomal protei 51.4 38 0.00083 29.1 5.4 55 281-335 33-87 (116)
55 cd00851 MTH1175 This uncharact 49.7 33 0.00072 28.1 4.8 43 283-332 55-97 (103)
56 PRK06683 hypothetical protein; 47.8 49 0.0011 26.4 5.2 56 282-341 18-73 (82)
57 PRK07283 hypothetical protein; 45.7 68 0.0015 26.5 6.0 50 282-339 25-78 (98)
58 COG1433 Uncharacterized conser 42.7 78 0.0017 27.4 6.0 52 282-339 56-107 (121)
59 PRK01018 50S ribosomal protein 41.0 73 0.0016 26.4 5.5 54 282-339 23-77 (99)
60 PF02603 Hpr_kinase_N: HPr Ser 36.5 35 0.00077 29.6 3.1 43 278-323 68-110 (127)
61 PRK05583 ribosomal protein L7A 34.7 95 0.0021 26.0 5.2 51 282-340 24-78 (104)
62 cd00562 NifX_NifB This CD repr 33.8 89 0.0019 25.3 5.0 38 283-326 53-90 (102)
63 smart00574 POX domain associat 31.1 1.6E+02 0.0035 26.0 6.1 46 392-437 84-129 (140)
64 PTZ00106 60S ribosomal protein 30.9 1.3E+02 0.0029 25.4 5.5 50 282-339 32-86 (108)
65 PF07526 POX: Associated with 26.8 1.8E+02 0.0039 25.9 5.8 46 392-437 84-129 (140)
66 COG4359 Uncharacterized conser 24.7 1.6E+02 0.0035 27.6 5.2 33 279-316 77-109 (220)
67 cd04743 NPD_PKS 2-Nitropropane 23.6 2.1E+02 0.0045 29.3 6.4 56 281-342 72-127 (320)
68 PTZ00365 60S ribosomal protein 23.2 1.7E+02 0.0037 28.8 5.3 55 281-338 138-192 (266)
69 cd01143 YvrC Periplasmic bindi 23.0 1.6E+02 0.0036 26.8 5.3 51 284-339 53-110 (195)
70 TIGR02663 nifX nitrogen fixati 22.9 2.4E+02 0.0053 24.0 5.9 52 280-339 54-109 (119)
71 cd03308 CmuA_CmuC_like CmuA_Cm 22.7 3.6E+02 0.0079 28.1 8.3 34 265-301 245-278 (378)
72 cd00852 NifB NifB belongs to a 22.7 1.7E+02 0.0036 24.2 4.8 39 280-326 56-94 (106)
73 PF10686 DUF2493: Protein of u 22.5 2.2E+02 0.0047 22.0 4.9 45 278-323 18-62 (71)
74 TIGR00129 fdhD_narQ formate de 21.9 91 0.002 30.4 3.3 42 282-328 183-224 (237)
75 PRK09534 btuF corrinoid ABC tr 21.8 1.8E+02 0.0038 30.2 5.7 53 283-340 111-170 (359)
76 PF12846 AAA_10: AAA-like doma 21.5 2E+02 0.0043 28.2 5.9 58 278-340 240-302 (304)
77 cd00717 URO-D Uroporphyrinogen 21.2 3.4E+02 0.0074 27.6 7.6 48 265-321 205-254 (335)
78 cd01141 TroA_d Periplasmic bin 21.1 2E+02 0.0042 26.2 5.4 50 284-338 62-119 (186)
79 TIGR03151 enACPred_II putative 20.8 2.8E+02 0.0062 28.0 6.8 56 282-342 78-133 (307)
80 cd01144 BtuF Cobalamin binding 20.8 2.2E+02 0.0049 27.1 5.9 52 284-340 50-108 (245)
81 cd00853 NifX NifX belongs to a 20.3 2.1E+02 0.0046 23.4 4.9 38 281-326 53-90 (102)
82 PRK00724 formate dehydrogenase 20.2 1E+02 0.0022 30.5 3.3 42 282-328 212-253 (263)
No 1
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4e-108 Score=884.79 Aligned_cols=515 Identities=69% Similarity=1.058 Sum_probs=494.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCC
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGD 99 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 99 (535)
++..++.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||
T Consensus 2 ~~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD 81 (517)
T TIGR02342 2 QDKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGD 81 (517)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHH
Q 009431 100 GTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLA 179 (535)
Q Consensus 100 Gttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls 179 (535)
||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++..+.+.|.++++|++++|+.+.+.++|+
T Consensus 82 GTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 161 (517)
T TIGR02342 82 GTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLA 161 (517)
T ss_pred CcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877688899999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCC-CCCceeeecceEEEEeeecCCCCcccc
Q 009431 180 PLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHA-AGGPTRVENAKIAVIQFQISPPKTDIE 258 (535)
Q Consensus 180 ~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~-~~~~~~~~n~~Ill~~~~L~~~~~~~~ 258 (535)
+++++|+..+++....+.+|+++|+|+++.|++.+||++++|++|+++ +.+ .+||+.++|++|++++++|++++++.+
T Consensus 162 ~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~-~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~ 240 (517)
T TIGR02342 162 PLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQK-ASRSAGGPTRIEKAKIGLIQFQISPPKTDME 240 (517)
T ss_pred HHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEecc-ccccCCCCccccCCcEEEEecCCCCCccccc
Confidence 999999999986432347888999999999999999999999999766 445 589999999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431 259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338 (535)
Q Consensus 259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 338 (535)
.++.+++++++++++++|+++++++++++.+.|++||+|+++|+++++++++++||.++||++++++++++|+|||++||
T Consensus 241 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tG 320 (517)
T TIGR02342 241 NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIG 320 (517)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 009431 339 CLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLI 418 (535)
Q Consensus 339 a~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 418 (535)
|++++++++++++++|+|+.|++.++|+++|++|++++.+++.+||+|||+|+.+++|++|+++||+++++++++++++|
T Consensus 321 a~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~V 400 (517)
T TIGR02342 321 CKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLI 400 (517)
T ss_pred CEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999999999999999999999998745899999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccc
Q 009431 419 AGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN 498 (535)
Q Consensus 419 pGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d 498 (535)
||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.++.++|+|+.+|++.|
T Consensus 401 pGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d 480 (517)
T TIGR02342 401 PGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITD 480 (517)
T ss_pred ECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccc
Confidence 99999999999999999888889999999999999999999999999999999999999999887788999999999999
Q ss_pred cccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 499 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
|++.|||||+.+|++++++|+|+|++|||||++|+++
T Consensus 481 ~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~ 517 (517)
T TIGR02342 481 MLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR 517 (517)
T ss_pred hhhccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence 9999999999999999999999999999999999875
No 2
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-106 Score=875.11 Aligned_cols=513 Identities=73% Similarity=1.110 Sum_probs=491.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
++..+.+++..|+.||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
|||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++++..+.+.|.++|+|+++||+.++++++|++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~ 161 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAP 161 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766888999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCC-CceeeecceEEEEeeecCCCCccccc
Q 009431 181 LAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAG-GPTRVENAKIAVIQFQISPPKTDIEQ 259 (535)
Q Consensus 181 li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~-~~~~~~n~~Ill~~~~L~~~~~~~~~ 259 (535)
++++|+.++++.+..+.+|+++|+|.+..|++++||++++|++|+++ +.++. ||++++|+++++++|+|++++++++.
T Consensus 162 li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~-~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~ 240 (515)
T cd03338 162 IAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQK-ASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDN 240 (515)
T ss_pred HHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEecc-ccCcCCCCccccCCcEEEEeccccccccccCc
Confidence 99999999987543247889999999999999999999999999766 44544 59999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 260 SIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 260 ~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
++.+++++++++++++|+++++++++.+.+.|++|||++++|+++++++++++||+++||.+++++++++|+|||++|||
T Consensus 241 ~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa 320 (515)
T cd03338 241 NIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGC 320 (515)
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 009431 340 LPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIA 419 (535)
Q Consensus 340 ~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 419 (535)
++++++++++++.+|+|+.|++.++|+++|++|++++.+++.+||+|||+|+.+++|++|+++||+++++++++++++||
T Consensus 321 ~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvp 400 (515)
T cd03338 321 KPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIP 400 (515)
T ss_pred EEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 99999999999999999999999999999999999976468999999999999999999999999999999999988999
Q ss_pred cCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCccccc
Q 009431 420 GGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNI 499 (535)
Q Consensus 420 GGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~ 499 (535)
|||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.++.++|+|+.+|++.||
T Consensus 401 GGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~ 480 (515)
T cd03338 401 GGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNI 480 (515)
T ss_pred CCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccch
Confidence 99999999999999998888899999999999999999999999999999999999999998777889999999999999
Q ss_pred ccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 500 LEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 500 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
++.|||||+.+|+++++.|+|+|++|||||++|++
T Consensus 481 ~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 481 LEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred hhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 99999999999999999999999999999999975
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.3e-106 Score=872.99 Aligned_cols=507 Identities=44% Similarity=0.685 Sum_probs=487.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDG 89 (519)
T TIGR02339 10 QRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDG 89 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCccc-chhhhhHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVV-SQYSTLLA 179 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~-~~~~~~ls 179 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++++|++..+.+.|.++|+|+++||+. +++.++|+
T Consensus 90 Ttt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls 169 (519)
T TIGR02339 90 TTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLA 169 (519)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999998766788999999999999999 78999999
Q ss_pred HHHHHHHHhccCC--CCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccc
Q 009431 180 PLAVDSVLSVVDP--CKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDI 257 (535)
Q Consensus 180 ~li~~a~~~v~~~--~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~ 257 (535)
+++++|+.++++. .+...+|+++|+|++++|++++||++++|++|+++ +.+++|++.++||+|++++++|++++++.
T Consensus 170 ~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~-~~~~~m~~~i~n~kIlll~~~Le~~~~~~ 248 (519)
T TIGR02339 170 NLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKE-PVHPGMPKRVKNAKIALLDAPLEVEKTEI 248 (519)
T ss_pred HHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecC-CCCCCCccccCCCcEEEEecccccccccc
Confidence 9999999999852 22225788999999999999999999999999665 56788999999999999999999999999
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHh
Q 009431 258 EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTL 337 (535)
Q Consensus 258 ~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~t 337 (535)
++++.+++.+++.+++++|++++++++++|.+.|++||+++++| ++.++++|.++||++++++++++|+|||++|
T Consensus 249 ~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~L~~~gI~~v~~v~~~~L~rIa~~t 323 (519)
T TIGR02339 249 DAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGI-----DDLAQHYLAKAGILAVRRVKKSDIEKLARAT 323 (519)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCc-----cHHHHHHHHHCCCEEEecCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 009431 338 NCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFL 417 (535)
Q Consensus 338 Ga~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~v 417 (535)
||++++++++++++.+|+|++|++.++|+++|++|+++.. +..+||+|||+|+.+++|.+|+++||+++++++++++++
T Consensus 324 Ga~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~v 402 (519)
T TIGR02339 324 GAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKN-PKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKV 402 (519)
T ss_pred CCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999999999999999999999977 789999999999999999999999999999999999889
Q ss_pred cccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCccc
Q 009431 418 IAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT 497 (535)
Q Consensus 418 vpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~ 497 (535)
|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.++.++|+|+.+|++.
T Consensus 403 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~ 482 (519)
T TIGR02339 403 VAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIE 482 (519)
T ss_pred eeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCcc
Confidence 99999999999999999988889999999999999999999999999999999999999999987677899999999999
Q ss_pred ccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 498 NILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 498 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
||++.|||||+.+|+++++.|+|+|++|||||++|++
T Consensus 483 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 483 DMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred chhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 9999999999999999999999999999999999864
No 4
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.8e-106 Score=871.60 Aligned_cols=507 Identities=33% Similarity=0.542 Sum_probs=486.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDG 89 (525)
T TIGR02344 10 KRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (525)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++++..+.+.|.++++|+++||+.++|.++|++
T Consensus 90 Ttt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~ 169 (525)
T TIGR02344 90 TTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCD 169 (525)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877888899999999999999999999999
Q ss_pred HHHHHHHhccCCC--CCCCcccc-cEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccc
Q 009431 181 LAVDSVLSVVDPC--KPDLVDLR-DIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDI 257 (535)
Q Consensus 181 li~~a~~~v~~~~--~~~~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~ 257 (535)
++++|+..++++. +...+|++ +|+|++++||+++||++++|++|++ .+.++.|++.++||+|++++++|++++++.
T Consensus 170 l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k-~~~~~~m~~~~~n~kIlll~~~Le~~~~~~ 248 (525)
T TIGR02344 170 LALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINK-DVTHPKMRRYIENPRIVLLDCPLEYKKGES 248 (525)
T ss_pred HHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEec-ccCCCCCccccCCCCEEEEecccccccccc
Confidence 9999999998643 11245553 5899999999999999999999965 477889999999999999999999999999
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHh
Q 009431 258 EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTL 337 (535)
Q Consensus 258 ~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~t 337 (535)
++++.++++++++.++++|++++++++++|.+.|++||+++++| +++++++|.++||++++++++++|+|||++|
T Consensus 249 ~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I-----~dla~~~l~~~~I~av~~v~~~~LerIa~~t 323 (525)
T TIGR02344 249 QTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGV-----SDLAQHYLLKANISAIRRVRKTDNNRIARAC 323 (525)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-----cHHHHHHHhHCCceEEecCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCeeeccccCCCCCCcee-eeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009431 338 NCLPIANIDHFRAEKLGH-ADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRF 416 (535)
Q Consensus 338 Ga~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 416 (535)
||++++++++++++.+|+ |+.|++.++|+++|++|++|+. ++.+||+|||+|+.+++|+||+++||++++++++++++
T Consensus 324 Ga~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~ 402 (525)
T TIGR02344 324 GATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKD-PKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPK 402 (525)
T ss_pred CCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCC-CCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999 9999999999999999999987 88999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCceeEEccCCc
Q 009431 417 LIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQG-EINSGINVRKGQ 495 (535)
Q Consensus 417 vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-~~~~Gid~~~~~ 495 (535)
+|||||++|++||.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.+ +.++|+|+.+|+
T Consensus 403 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~ 482 (525)
T TIGR02344 403 LLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGK 482 (525)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCc
Confidence 9999999999999999999888899999999999999999999999999999999999999999776 678999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 496 ITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 496 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
+.||++.|||||+.+|+++++.|+|+|++|||||++|.+
T Consensus 483 ~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 521 (525)
T TIGR02344 483 IVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSG 521 (525)
T ss_pred cccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 999999999999999999999999999999999999875
No 5
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-105 Score=864.49 Aligned_cols=506 Identities=29% Similarity=0.468 Sum_probs=484.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDG 89 (531)
T TIGR02347 10 ESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDG 89 (531)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCC-CCCHHHHHHHHHHHhcCcccchhhhhHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVE-LSDRDSLVKSASTSLNSKVVSQYSTLLA 179 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~-~~~~~~l~~va~tsl~sk~~~~~~~~ls 179 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++.. ..+.+.|.++++|+++||+.++++++|+
T Consensus 90 TTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls 169 (531)
T TIGR02347 90 TTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLT 169 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999999997763 4578899999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccc
Q 009431 180 PLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQ 259 (535)
Q Consensus 180 ~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~ 259 (535)
+++++|+..+++.. ..+|+++|++.+..|++.+||++++|++|+++ +.++.||+.++||+|++++++|++++++.++
T Consensus 170 ~iv~~Av~~v~~~~--~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~-~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~ 246 (531)
T TIGR02347 170 EIVVDAVLAIKKDG--EQIDLFMVEIMEMKHKSATDTTLIRGLVLDHG-ARHPDMPRRVKNAYILTCNVSLEYEKTEVNS 246 (531)
T ss_pred HHHHHHHHHHhhcC--CCCChhHeEEEEecCCCccccEEEeeEEEecC-cCCCCCceeccCceEEEEeCCCCCCccccCc
Confidence 99999999998642 14788889999999999999999999999766 5567899999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEEcCCccccccchHHHHHHHhcCceeccCCCHHH
Q 009431 260 SIVVSDYTQMDRILKEERNYILGMIKKIKATG-------CN---VLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDE 329 (535)
Q Consensus 260 ~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~-------~~---lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~ 329 (535)
++.+++++++..+++.|+++++.++++|.+.+ ++ ||+++++| ++.+++||.++||++++++++++
T Consensus 247 ~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I-----~~~a~~~L~~~~I~~i~rv~~~~ 321 (531)
T TIGR02347 247 GFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI-----DPPSLDLLAKEGIMALRRAKRRN 321 (531)
T ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCc-----cHHHHHHHHHCCceEEccCCHHH
Confidence 99999999999999999999999999999876 25 99999999 99999999999999999999999
Q ss_pred HHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 009431 330 IEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVR 409 (535)
Q Consensus 330 L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 409 (535)
|+|||++|||++++++++++++++|+|+.|++..+|+++|++|+++.. ++.+||+|||+|+.+++|++|+++||+++++
T Consensus 322 le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~ 400 (531)
T TIGR02347 322 MERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKN-PKSCTILIKGPNDHTIKQIKDAVRDGLRAVK 400 (531)
T ss_pred HHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCC-CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 8899999999999999999999999999999
Q ss_pred HHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeE
Q 009431 410 CLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGI 489 (535)
Q Consensus 410 ~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gi 489 (535)
++++++++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+
T Consensus 401 ~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gi 480 (531)
T TIGR02347 401 NAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGV 480 (531)
T ss_pred HHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceee
Confidence 99999899999999999999999999888899999999999999999999999999999999999999999877778999
Q ss_pred EccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 490 NVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 490 d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|+++
T Consensus 481 d~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~ 526 (531)
T TIGR02347 481 DLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAG 526 (531)
T ss_pred eccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCc
Confidence 9999999999999999999999999999999999999999999864
No 6
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-108 Score=791.90 Aligned_cols=508 Identities=35% Similarity=0.558 Sum_probs=491.9
Q ss_pred ceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHh
Q 009431 15 KTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSK 91 (535)
Q Consensus 15 ~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 91 (535)
|+.+++ +.++|.-.+.+||++|..+++.++|||||+||||+|+++.|+++|||||+||+|.|++-||+++.++++++
T Consensus 5 ~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia~ 84 (543)
T KOG0361|consen 5 PIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIAR 84 (543)
T ss_pred CEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHh
Confidence 566676 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCC----HHHHHHHHHHHhc
Q 009431 92 SQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD----RDSLVKSASTSLN 167 (535)
Q Consensus 92 ~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~----~~~l~~va~tsl~ 167 (535)
+||.++||||||+|+|++++|+++.-+++.|+||..|+++|+.|...|++.++++++.++..+ ++.|.++|.|+++
T Consensus 85 sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~ls 164 (543)
T KOG0361|consen 85 SQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALS 164 (543)
T ss_pred hccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999887433 6788999999999
Q ss_pred CcccchhhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCC---CceeeecceEE
Q 009431 168 SKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAG---GPTRVENAKIA 244 (535)
Q Consensus 168 sk~~~~~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~---~~~~~~n~~Il 244 (535)
||.+.+..++|+++++||+..+.. ..+++.|-|.|++||+++||.+++|+.| ++.|++.+ .|+++.||||+
T Consensus 165 SKlI~~ek~fF~~MvVDAV~~ld~-----~l~~~mIGIKKV~GG~~~dS~lv~GVAF-kKtFsYAGfEqqPKk~~NpkIl 238 (543)
T KOG0361|consen 165 SKLIRQEKEFFAKMVVDAVLTLDN-----DLDLNMIGIKKVPGGAMEDSLLVNGVAF-KKTFSYAGFEQQPKKFLNPKIL 238 (543)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhcc-----ccchhhcceeecCCCccchhhhccceee-eehccccchhhCccccCCceEE
Confidence 999999999999999999998873 3566899999999999999999999999 77788765 79999999999
Q ss_pred EEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccC
Q 009431 245 VIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKD 324 (535)
Q Consensus 245 l~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~ 324 (535)
++|.+||.+.++.++++.+.++++++.+...||+.+.+++++++..|+|+|++.-.| .|++.+||++++|.|-+|
T Consensus 239 ~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpI-----GD~ATQyFAdrdiFCAGR 313 (543)
T KOG0361|consen 239 LLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPI-----GDLATQYFADRDIFCAGR 313 (543)
T ss_pred EEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccc-----hHHHHHHhhccCceecCc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHH
Q 009431 325 VERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDA 404 (535)
Q Consensus 325 v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~da 404 (535)
++.+||.|+..++|+++.++..++.++.+|.|..|+++++|++||-+|+||+. .++||++|||+.++.++|.+|++|||
T Consensus 314 V~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~-aktcTliLRGgaeqfieE~eRSlHDA 392 (543)
T KOG0361|consen 314 VPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPK-AKTCTLILRGGAEQFIEETERSLHDA 392 (543)
T ss_pred CCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCc-cceeEEEEeccHHHHHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCC
Q 009431 405 LCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGE 484 (535)
Q Consensus 405 l~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~ 484 (535)
++++|.++++..||+|||++||++|++|++++..+.+++|+.+.+|++|||.|||+||+|+|+|..+++++||..|.+|.
T Consensus 393 ImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~ 472 (543)
T KOG0361|consen 393 IMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGE 472 (543)
T ss_pred HHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 485 INSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 485 ~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
.|+|+|++++.+.|+++.+||||..||++++..|+|+|++||.+|+.|++
T Consensus 473 ~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn 522 (543)
T KOG0361|consen 473 KWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKN 522 (543)
T ss_pred ceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcC
Confidence 99999999999999999999999999999999999999999999999875
No 7
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-105 Score=867.80 Aligned_cols=508 Identities=36% Similarity=0.574 Sum_probs=483.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|++||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHc-cceeCCCCCHHHHHHHHHHHhcCcccchhhhhHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLA 179 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~-~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls 179 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++ +++|++..+++.|.++++|+++||+.+.+.++|+
T Consensus 82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls 161 (527)
T cd03335 82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFA 161 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHH
Confidence 999999999999999999999999999999999999999999996 8999876688899999999999999998889999
Q ss_pred HHHHHHHHhccCC-C-CCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccc
Q 009431 180 PLAVDSVLSVVDP-C-KPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDI 257 (535)
Q Consensus 180 ~li~~a~~~v~~~-~-~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~ 257 (535)
+++++|+..++.. . +...+|+++|+|++.+|+++++|++++|++|+++ +.+++||+.++||+|++++++|++.+++.
T Consensus 162 ~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~-~~~~~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 162 NMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCT-RASQGMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecc-cCCCCCcccccCCcEEEEeccCCCCcccc
Confidence 9999999999632 1 2124788999999999999999999999999665 66788999999999999999999999999
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHh
Q 009431 258 EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTL 337 (535)
Q Consensus 258 ~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~t 337 (535)
++++.++++++++.+.+.|++++++++++|.+.|++|||++++| ++.+++||.++||++++++++++|+|||++|
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I-----~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGI-----DDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC-----cHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCeeeccccCC------CCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 009431 338 NCLPIANIDHF------RAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCL 411 (535)
Q Consensus 338 Ga~ii~~~~~l------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 411 (535)
||+++++++++ +++++|+|++|++.++|+++|++|++++. ++.+||+|||+|+.+++|++|+++||+++++++
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~-~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~ 394 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRT 394 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998655 34589999999999999999999999987 899999999999999999999999999999999
Q ss_pred HhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcC--------
Q 009431 412 VSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQG-------- 483 (535)
Q Consensus 412 ~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-------- 483 (535)
++++++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|.++
T Consensus 395 ~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~ 474 (527)
T cd03335 395 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKH 474 (527)
T ss_pred hhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccccc
Confidence 999889999999999999999999888899999999999999999999999999999999999999999765
Q ss_pred CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 484 EINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 484 ~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
++++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|+++
T Consensus 475 ~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~ 526 (527)
T cd03335 475 LKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLN 526 (527)
T ss_pred CceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecC
Confidence 4579999999999999999999999999999999999999999999998763
No 8
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.6e-105 Score=865.73 Aligned_cols=508 Identities=45% Similarity=0.699 Sum_probs=488.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 9 ~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 88 (517)
T cd03343 9 QRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDG 88 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
|||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++++..+.+.|.++|+|+++||+.+++.++|++
T Consensus 89 Ttt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 168 (517)
T cd03343 89 TTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLAD 168 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766788999999999999999999999999
Q ss_pred HHHHHHHhccCCC-CCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccc
Q 009431 181 LAVDSVLSVVDPC-KPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQ 259 (535)
Q Consensus 181 li~~a~~~v~~~~-~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~ 259 (535)
++++|+.++++.. +...+|+++|+|.+++|++++||++++|++|+++ +.+++|++.++||+|++++++||+++++.++
T Consensus 169 l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~-~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~ 247 (517)
T cd03343 169 LVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKE-VVHPGMPKRVENAKIALLDAPLEVKKTEIDA 247 (517)
T ss_pred HHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEecc-CCCCCCccccCCCcEEEEeccccCCccccce
Confidence 9999999997642 1225788899999999999999999999999665 5678899999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 260 SIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 260 ~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
++.+++.+++..++++|++++++++++|.+.|++||+++++| ++.+++||.++||++++++++++|+|||++|||
T Consensus 248 ~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa 322 (517)
T cd03343 248 KIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGI-----DDLAQHYLAKAGILAVRRVKKSDMEKLARATGA 322 (517)
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-----cHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 009431 340 LPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIA 419 (535)
Q Consensus 340 ~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 419 (535)
++++++++++++.+|+|+.|++.++|+++|++|++|+. +..+||+|||+|+.+++|++|+++||++++|++++++++||
T Consensus 323 ~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvp 401 (517)
T cd03343 323 KIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKN-PKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVA 401 (517)
T ss_pred EEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCC-CceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 99999999999999999999999999999999999987 78999999999999999999999999999999999988999
Q ss_pred cCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCccccc
Q 009431 420 GGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNI 499 (535)
Q Consensus 420 GGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~ 499 (535)
|||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.++++.|..++.++|+|+.+|++.||
T Consensus 402 GGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~ 481 (517)
T cd03343 402 GGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDM 481 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccch
Confidence 99999999999999998888999999999999999999999999999999999999999998777789999999999999
Q ss_pred ccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 500 LEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 500 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
++.|||||+.+|+++|+.|+|+|++|||||++|+++
T Consensus 482 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 517 (517)
T cd03343 482 LEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAAK 517 (517)
T ss_pred hhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence 999999999999999999999999999999999875
No 9
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-105 Score=863.81 Aligned_cols=506 Identities=39% Similarity=0.619 Sum_probs=483.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
++.+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 21 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDG 100 (532)
T TIGR02343 21 KRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDG 100 (532)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCC--CCCHHHHHHHHHHHhcCcccchhhhhH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVE--LSDRDSLVKSASTSLNSKVVSQYSTLL 178 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~--~~~~~~l~~va~tsl~sk~~~~~~~~l 178 (535)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++ ..+.+.|.++++|++++|+.+.+.++|
T Consensus 101 TttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l 180 (532)
T TIGR02343 101 TTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRF 180 (532)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999998874 335788999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCcccc
Q 009431 179 APLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIE 258 (535)
Q Consensus 179 s~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~ 258 (535)
++++++|+..+.+.. ...+|+++|+|++++||+++||++++|++|+++ +.+++||+.++||||++++++|++++++++
T Consensus 181 s~i~~~av~~i~~~~-~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~-~~~~~m~~~~~n~kI~l~~~~le~~~~~~~ 258 (532)
T TIGR02343 181 AEIAVDAVLMVADME-RRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKD-FSHPQMPKEVKDAKIAILTCPFEPPKPKTK 258 (532)
T ss_pred HHHHHHHHHhhhhcC-CCcCCHHHeeEEEecCCCcccceeEeeEEEecC-cCCCCCCeeecCCcEEEEEeeccccccccc
Confidence 999999999986422 236888999999999999999999999999655 667889999999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431 259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338 (535)
Q Consensus 259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 338 (535)
+++.++++++++++.+.|+++++++++++.+.|++||+++++| ++.++++|.++||++++++++++|+|||++||
T Consensus 259 ~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I-----~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tG 333 (532)
T TIGR02343 259 HKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGF-----DDEANHLLLQNDLPAVRWVGGHELELIAIATG 333 (532)
T ss_pred eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCc-----cHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CeeeccccCCCCCCceeeeEEEEEEecc--eEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009431 339 CLPIANIDHFRAEKLGHADLVEELSLGD--GKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRF 416 (535)
Q Consensus 339 a~ii~~~~~l~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 416 (535)
|++++++++++++.+|+|+.|++.++|+ ++|++|++|+. ++.+||+|||+|+.+++|.||+++||++++++++++++
T Consensus 334 a~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~ 412 (532)
T TIGR02343 334 GRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKN-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSR 412 (532)
T ss_pred CEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999987 48999999987 78999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCceeEEccCCc
Q 009431 417 LIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQG-EINSGINVRKGQ 495 (535)
Q Consensus 417 vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-~~~~Gid~~~~~ 495 (535)
+|||||++|++|+++|+++++..++++++++++|++||+.||++|++|||+|+.+++.+++..|..+ +.++|+|+.+|+
T Consensus 413 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~ 492 (532)
T TIGR02343 413 IVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDG 492 (532)
T ss_pred EEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCc
Confidence 9999999999999999999888899999999999999999999999999999999999999999754 667999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 496 ITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 496 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|.+
T Consensus 493 i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 493 TNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred cccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 999999999999999999999999999999999999975
No 10
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.9e-105 Score=862.53 Aligned_cols=504 Identities=36% Similarity=0.578 Sum_probs=482.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|+.+|..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDG 89 (522)
T cd03340 10 DTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDG 89 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCC----CHHHHHHHHHHHhcCcccchhhh
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELS----DRDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~----~~~~l~~va~tsl~sk~~~~~~~ 176 (535)
|||+++|+++||+++.+++++|+||+.|++||+.|++.++++|++++++++.. +.+.|.++++|+++||+.+++.+
T Consensus 90 Ttt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~ 169 (522)
T cd03340 90 TTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKE 169 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHH
Confidence 99999999999999999999999999999999999999999999999988642 36779999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCC--CCCceeeecceEEEEeeecCCCC
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHA--AGGPTRVENAKIAVIQFQISPPK 254 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~--~~~~~~~~n~~Ill~~~~L~~~~ 254 (535)
+|++++++|+..+++ .+|.++|+|+++.|++++||++++|++|++++.++ ..||+.++||+|++++++|++.+
T Consensus 170 ~l~~l~~~A~~~v~~-----~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~ 244 (522)
T cd03340 170 FFAKMVVDAVLSLDD-----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKA 244 (522)
T ss_pred HHHHHHHHHHHHhcc-----cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCc
Confidence 999999999999975 35678999999999999999999999997664432 23689999999999999999999
Q ss_pred ccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHH
Q 009431 255 TDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFIT 334 (535)
Q Consensus 255 ~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia 334 (535)
++.+.++.++++++++++.+.|+++++++++.+.+.|++||+++++| ++.+++||.++||++++++++++|+|||
T Consensus 245 ~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i-----~d~a~~~l~~~~I~~~~~v~~~~l~rIa 319 (522)
T cd03340 245 EKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPI-----GDLATQYFADRDIFCAGRVPEEDLKRVA 319 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-----cHHHHHHHHHCCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 009431 335 KTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSK 414 (535)
Q Consensus 335 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 414 (535)
++|||++++++++++++.+|+|+.|++.++|+++|++|++|+. ++.+||+|||+++..++|.+|+++||++++++++++
T Consensus 320 ~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~ 398 (522)
T cd03340 320 QATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPK-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKN 398 (522)
T ss_pred HHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred CcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCC-CceeEEccC
Q 009431 415 RFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGE-INSGINVRK 493 (535)
Q Consensus 415 ~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~-~~~Gid~~~ 493 (535)
+++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|+.++ .++|+|+.+
T Consensus 399 ~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~ 478 (522)
T cd03340 399 DSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINN 478 (522)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCC
Confidence 9999999999999999999998888999999999999999999999999999999999999999998776 789999999
Q ss_pred CcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 494 GQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 494 ~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
|++.||++.|||||+.||+++++.|+|+|++|||||++|+++
T Consensus 479 g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 479 EGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred CcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 999999999999999999999999999999999999999864
No 11
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-104 Score=860.82 Aligned_cols=505 Identities=40% Similarity=0.632 Sum_probs=481.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 17 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDG 96 (526)
T cd03339 17 KRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDG 96 (526)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCC--CCHHHHHHHHHHHhcCcccchhhhhH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVEL--SDRDSLVKSASTSLNSKVVSQYSTLL 178 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~--~~~~~l~~va~tsl~sk~~~~~~~~l 178 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++++|++. .+.+.|.++++|++++|+.+.+.++|
T Consensus 97 Ttt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~ 176 (526)
T cd03339 97 TTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQF 176 (526)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999998753 36788999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCcccc
Q 009431 179 APLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIE 258 (535)
Q Consensus 179 s~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~ 258 (535)
++++++|+..+.+.. ...+|++.|+|.+++||+++||++++|++|+++ +.+++|++..+||||++++++|++++++++
T Consensus 177 s~i~v~av~~i~~~~-~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~-~~~~~m~~~~~n~kI~ll~~~le~~~~~~~ 254 (526)
T cd03339 177 AEIAVDAVLSVADLE-RKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKD-FSHPQMPKEVKDAKIAILTCPFEPPKPKTK 254 (526)
T ss_pred HHHHHHHHHHHhhcC-CCccchHHeEEEEecCcCHHHcceeeeEEEecc-cCCCCCCceecCCCEEEEEecccCCccccc
Confidence 999999999886532 125677899999999999999999999999655 677899999999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431 259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338 (535)
Q Consensus 259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 338 (535)
+++.++++++++++.++|+++++++++++.+.|++||+++++| ++.+++||.++||++++++++++|+|||++||
T Consensus 255 ~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~L~~~~I~av~~v~~~~LerIa~~tG 329 (526)
T cd03339 255 HKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGF-----DDEANHLLLQNGLPAVRWVGGVEIELIAIATG 329 (526)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCC-----CHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CeeeccccCCCCCCceeeeEEEEEEecc--eEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009431 339 CLPIANIDHFRAEKLGHADLVEELSLGD--GKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRF 416 (535)
Q Consensus 339 a~ii~~~~~l~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 416 (535)
|++++++++++++.+|+|+.|++.++|. ++|++|++|+. ++.+||+|||+|+.+++|+||+++||++++++++++++
T Consensus 330 a~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~ 408 (526)
T cd03339 330 GRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPN-SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNR 408 (526)
T ss_pred CEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999985 68999999987 88999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCceeEEccCCc
Q 009431 417 LIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQ-GEINSGINVRKGQ 495 (535)
Q Consensus 417 vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~-~~~~~Gid~~~~~ 495 (535)
+|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++.++|+|+.+|+
T Consensus 409 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~ 488 (526)
T cd03339 409 IVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRG 488 (526)
T ss_pred EEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCc
Confidence 999999999999999999988888999999999999999999999999999999999999999964 3568999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhc
Q 009431 496 ITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533 (535)
Q Consensus 496 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 533 (535)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 489 ~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 489 TNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred cCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 99999999999999999999999999999999999873
No 12
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-104 Score=856.30 Aligned_cols=502 Identities=35% Similarity=0.562 Sum_probs=481.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecC--CCCeEEccchHHHhccccccChHHHHHHHHHhhcccccC
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTA--SGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAG 98 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 98 (535)
+..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|++++|
T Consensus 7 ~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~G 86 (517)
T cd03336 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVG 86 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhC
Confidence 567899999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCC---CHHHHHHHHHHHhcCcccchhh
Q 009431 99 DGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELS---DRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 99 DGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~---~~~~l~~va~tsl~sk~~~~~~ 175 (535)
|||||+++|+++||+++.+|+++|+||..|++||+.|.+.++++|+++++|++.. +.+.|.++|+|+++||+.++++
T Consensus 87 DGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~ 166 (517)
T cd03336 87 DGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDK 166 (517)
T ss_pred CChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhH
Confidence 9999999999999999999999999999999999999999999999999988421 3578999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCc
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKT 255 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~ 255 (535)
++|++++++|+..+++ .+|+++|++++++|++++||++++|+++++. +.+ .||+.++||+|++++++|+++++
T Consensus 167 ~~l~~l~~~A~~~v~~-----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~-~~~-~~~~~~~n~kIli~~~~le~~~~ 239 (517)
T cd03336 167 EHFAELAVDAVLRLKG-----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKK-IGV-NQPKRIENAKILIANTPMDTDKI 239 (517)
T ss_pred HHHHHHHHHHHHHhhc-----cCCccceeEEEccCCCccceEEEeeEEEecc-cCC-CCCCeeccccEEEEecCCCcccc
Confidence 9999999999999864 4677899999999999999999999999654 433 57999999999999999999999
Q ss_pred cc-cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHH
Q 009431 256 DI-EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFIT 334 (535)
Q Consensus 256 ~~-~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia 334 (535)
++ ++++.+++++++..+.+.|+++++++++.|.+.|++++++++.| ++.+++||.++||++++++++++|+|||
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I-----~~~~~~~l~~~~I~av~~v~~~~L~rIa 314 (517)
T cd03336 240 KIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLI-----YNYPEQLFADAGIMAIEHADFDGVERLA 314 (517)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCc-----cHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 97 88999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 009431 335 KTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSK 414 (535)
Q Consensus 335 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 414 (535)
++|||++++++++++++.+|+|+.|++..+|+++|.+|++|+. ++.+||+|||+|+.+++|.+|+++||++++++++++
T Consensus 315 ~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~ 393 (517)
T cd03336 315 LVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA-GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKD 393 (517)
T ss_pred HHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred CcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCC
Q 009431 415 RFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKG 494 (535)
Q Consensus 415 ~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~ 494 (535)
+++|||||++|++|+.+|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|
T Consensus 394 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g 473 (517)
T cd03336 394 TRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKG 473 (517)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999988888899999999
Q ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 495 QITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 495 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
++.||++.|||||+.||+++|+.|+|+|++|||||++|+++
T Consensus 474 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 514 (517)
T cd03336 474 TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCA 514 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcC
Confidence 99999999999999999999999999999999999999864
No 13
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=4.1e-104 Score=855.77 Aligned_cols=501 Identities=36% Similarity=0.578 Sum_probs=481.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecC-----CCCeEEccchHHHhccccccChHHHHHHHHHhhccc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTA-----SGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDA 95 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~-----~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~ 95 (535)
+..+|.+++..|+.||..++++|+|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|++
T Consensus 16 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd~ 95 (533)
T PTZ00212 16 QEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQDE 95 (533)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHhhhh
Confidence 678999999999999999999999999999999999998 599999999999999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCC---HHHHHHHHHHHhcCcccc
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD---RDSLVKSASTSLNSKVVS 172 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~---~~~l~~va~tsl~sk~~~ 172 (535)
++||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++++|++..+ .+.|.++|+|+++||+.+
T Consensus 96 ~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~ 175 (533)
T PTZ00212 96 EVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLT 175 (533)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999886433 678999999999999999
Q ss_pred hhhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCC
Q 009431 173 QYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISP 252 (535)
Q Consensus 173 ~~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~ 252 (535)
.+.+.|++++++|+..+.+ .++++.|++++++|++++||++++|+++++. +.+ .|+++++||+|++++++||+
T Consensus 176 ~~~~~l~~i~~~av~~i~~-----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~-~~~-~~~~~i~n~kIll~~~~Le~ 248 (533)
T PTZ00212 176 VEKDHFAKLAVDAVLRLKG-----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKK-IGV-GQPKRLENCKILVANTPMDT 248 (533)
T ss_pred hhHHHHHHHHHHHHHHHhc-----cCCccceEEEEecCcCccccEEEEeEEEecc-cCC-CCCccccCCcEEEEeCCCCC
Confidence 9999999999999999864 3677899999999999999999999999644 544 58999999999999999999
Q ss_pred CCccc-cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHH
Q 009431 253 PKTDI-EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIE 331 (535)
Q Consensus 253 ~~~~~-~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~ 331 (535)
+++++ ++++.+++++++..+.+.|+++++++++.|++.|+++++++++| ++.++++|.++||++++++++++++
T Consensus 249 ~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I-----~d~a~~~L~~~~I~avr~v~~~~l~ 323 (533)
T PTZ00212 249 DKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLI-----YNYPEQLFAEAGIMAIEHADFDGME 323 (533)
T ss_pred CcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCc-----cHHHHHHHHHCCCEEEecCCHHHHH
Confidence 99998 88999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 009431 332 FITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCL 411 (535)
Q Consensus 332 ~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 411 (535)
|||++|||++++++++++++.+|+|+.|++..+|+++|++|++|.. ++.|||+|||+|+.+++|.||+++||+++++++
T Consensus 324 rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~ 402 (533)
T PTZ00212 324 RLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-GEACTIVLRGASTHILDEAERSLHDALCVLSQT 402 (533)
T ss_pred HHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCC-CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 899999999999999999999999999999999
Q ss_pred HhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEc
Q 009431 412 VSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINV 491 (535)
Q Consensus 412 ~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~ 491 (535)
++++++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+
T Consensus 403 i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~ 482 (533)
T PTZ00212 403 VKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDM 482 (533)
T ss_pred hhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceec
Confidence 99999999999999999999999988889999999999999999999999999999999999999999987778899999
Q ss_pred cCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 492 RKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 492 ~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 483 ~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~ 525 (533)
T PTZ00212 483 EKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRC 525 (533)
T ss_pred cCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhc
Confidence 9999999999999999999999999999999999999999975
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.5e-104 Score=853.53 Aligned_cols=504 Identities=35% Similarity=0.562 Sum_probs=483.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
++.+|.+++..|+.||..++++|++||||+||+|||+++.| ++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 12 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~GDG 90 (522)
T TIGR02345 12 DTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDG 90 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCC---CCHHHHHHHHHHHhcCcccchhhhh
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVEL---SDRDSLVKSASTSLNSKVVSQYSTL 177 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~---~~~~~l~~va~tsl~sk~~~~~~~~ 177 (535)
|||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|+++++|++. .+.+.|.++|+|+++||+.++++++
T Consensus 91 TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ 170 (522)
T TIGR02345 91 TTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEF 170 (522)
T ss_pred chhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHH
Confidence 9999999999999999999999999999999999999999999999998862 2457899999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCC--CCCceeeecceEEEEeeecCCCCc
Q 009431 178 LAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHA--AGGPTRVENAKIAVIQFQISPPKT 255 (535)
Q Consensus 178 ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~--~~~~~~~~n~~Ill~~~~L~~~~~ 255 (535)
|++++++|+.++++. .+|+++|+|+++.|++++||++++|++|++++.++ ..||+.++||+|++++++|++.+.
T Consensus 171 l~~l~~~A~~~v~~~----~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~ 246 (522)
T TIGR02345 171 FSKMIVDAVLQLDID----DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAE 246 (522)
T ss_pred HHHHHHHHHHHHhhc----cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCcc
Confidence 999999999999753 57888999999999999999999999998775543 236899999999999999999999
Q ss_pred cccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHH
Q 009431 256 DIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITK 335 (535)
Q Consensus 256 ~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~ 335 (535)
+.+..+.++++++++++.+.|+++++++++.+.+.|+++|+++++| ++.+++||.++||+++++++.++++++++
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i-----~d~~~~~L~~~~I~~~~~v~~~dl~ria~ 321 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPI-----GDLATQYFADHNIFCAGRVSDEDLKRVVK 321 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCc-----cHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009431 336 TLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKR 415 (535)
Q Consensus 336 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 415 (535)
+|||++++++++++++.+|+|+.|++.++|+++|.+|++++. ++.+||+|||+|+.+++|.+|+++||+++++++++++
T Consensus 322 ~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 322 ACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPH-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred HhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999987 7899999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCc
Q 009431 416 FLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQ 495 (535)
Q Consensus 416 ~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~ 495 (535)
++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|+.++.++|+|+.+|+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~ 480 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTED 480 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCc
Confidence 99999999999999999998888899999999999999999999999999999999999999999877778999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 496 ITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 496 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
+.||++.|||||+.||+++|+.|+|+|++|||||++|+++
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 481 IGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred ccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 9999999999999999999999999999999999999864
No 15
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-103 Score=850.84 Aligned_cols=508 Identities=36% Similarity=0.554 Sum_probs=482.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
++.+|.+++..|++||..|++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHcc-ceeCCCCCHHHHHHHHHHHhcCcccchhhhhHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAM-AVPVELSDRDSLVKSASTSLNSKVVSQYSTLLA 179 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~-~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls 179 (535)
|||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++ ++|++..+.+.|.++|+|+++||+.+.++++|+
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 165 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFS 165 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999974 888876678899999999999999999999999
Q ss_pred HHHHHHHHhccCC--CCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccc
Q 009431 180 PLAVDSVLSVVDP--CKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDI 257 (535)
Q Consensus 180 ~li~~a~~~v~~~--~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~ 257 (535)
+++++|+..++.. .+...+|+++|++++++|++++||++++|++|+++ +.+++|++.++||+|++++++|++.+++.
T Consensus 166 ~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~-~~~~~m~~~~~n~kIli~~~~L~~~~~~~ 244 (536)
T TIGR02340 166 NIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCT-RASQQMPKRIKKAKIACLDFNLQKQKMAL 244 (536)
T ss_pred HHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecc-cCCCCCcceecCCcEEEEecCCCCCcccC
Confidence 9999999999632 12224788999999999999999999999999765 56788999999999999999999999999
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHh
Q 009431 258 EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTL 337 (535)
Q Consensus 258 ~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~t 337 (535)
++++.++++.+++.+.+.|++++.+.++.|.+.+++||+++++| ++.+++||.++||++++++++++|+|||++|
T Consensus 245 ~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I-----~~~a~~~L~k~~I~~i~rv~~~~LerIa~~t 319 (536)
T TIGR02340 245 GVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGI-----DDMCLKYFVEAGAMGVRRCKKEDLKRIAKAT 319 (536)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC-----cHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCeeeccccCC------CCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 009431 338 NCLPIANIDHF------RAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCL 411 (535)
Q Consensus 338 Ga~ii~~~~~l------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 411 (535)
||++++++.++ +++.+|+|++|++.++|+++|++|+++.. ++.+||+|||+|+.+++|++|+++||+++++++
T Consensus 320 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~ 398 (536)
T TIGR02340 320 GGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKG-RKSASIILRGANDFMLDEMERSLHDALCVVKRT 398 (536)
T ss_pred CCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997554 44569999999999999999999999876 789999999999999999999999999999999
Q ss_pred HhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcC--------
Q 009431 412 VSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQG-------- 483 (535)
Q Consensus 412 ~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-------- 483 (535)
++++++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++
T Consensus 399 ~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~ 478 (536)
T TIGR02340 399 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKH 478 (536)
T ss_pred hcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCccccccc
Confidence 999889999999999999999998888889999999999999999999999999999999999999999765
Q ss_pred CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 484 EINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 484 ~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
+.++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|+++
T Consensus 479 ~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~ 530 (536)
T TIGR02340 479 LKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLN 530 (536)
T ss_pred CceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3479999999999999999999999999999999999999999999999764
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.4e-103 Score=845.27 Aligned_cols=502 Identities=34% Similarity=0.555 Sum_probs=479.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCC--CCeEEccchHHHhccccccChHHHHHHHHHhhcccccC
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTAS--GEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAG 98 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~--g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 98 (535)
+..+|.+++..|++|+..++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|+++++++|++++|
T Consensus 8 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~G 87 (519)
T TIGR02341 8 QEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVG 87 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhC
Confidence 5778999999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCC---CHHHHHHHHHHHhcCcccchhh
Q 009431 99 DGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELS---DRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 99 DGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~---~~~~l~~va~tsl~sk~~~~~~ 175 (535)
|||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++.. +.+.|.++++|++++|+.+.+.
T Consensus 88 DGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~ 167 (519)
T TIGR02341 88 DGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHK 167 (519)
T ss_pred CchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHH
Confidence 9999999999999999999999999999999999999999999999999988531 3578999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCc
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKT 255 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~ 255 (535)
+.|++++++|+..+.+ ..|++.|++.+++|+++++|++++|+++++. +.+ .||+.++||+|++++++|+++++
T Consensus 168 ~~~s~l~~~av~~i~~-----~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~-~~~-~~~~~~~n~~Ili~~~~Le~~~~ 240 (519)
T TIGR02341 168 DHFAQLAVDAVLRLKG-----SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKK-IGV-NQPKRIENAKILIANTPMDTDKV 240 (519)
T ss_pred HHHHHHHHHHHHHhcc-----CCChhheEEEEccCCCcccceEEeeEEEecc-CCC-CCceeeccccEEEEecCCCCCcc
Confidence 9999999999999853 2355789999999999999999999999644 544 67999999999999999999999
Q ss_pred cc-cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHH
Q 009431 256 DI-EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFIT 334 (535)
Q Consensus 256 ~~-~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia 334 (535)
++ ++++.+++++++..+.+.|++++.++++.|++.|++++++++.| ++.+++||.++||++++++++++|+|||
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I-----~~~~~~~l~~~~I~~v~~~~~~~l~~ia 315 (519)
T TIGR02341 241 KVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLI-----YNYPEQLFADAGVMAIEHADFEGIERLA 315 (519)
T ss_pred ccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcC-----CHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 97 88999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 009431 335 KTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSK 414 (535)
Q Consensus 335 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 414 (535)
++|||++++++++++++++|+|+.|++..+|+++|.+|++|+. ++.+||+|||+|+.+++|.||+++||++++++++++
T Consensus 316 ~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~ 394 (519)
T TIGR02341 316 LVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL-GEACTIVLRGATQQILDESERSLHDALCVLSQTVKE 394 (519)
T ss_pred HHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCC-CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred CcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCC
Q 009431 415 RFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKG 494 (535)
Q Consensus 415 ~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~ 494 (535)
+++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|..+..++|+|+.+|
T Consensus 395 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g 474 (519)
T TIGR02341 395 SRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEG 474 (519)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999987777899999999
Q ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 495 QITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 495 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
++.||++.|||||+.||+++++.|+|+|++|||||++|+++
T Consensus 475 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 515 (519)
T TIGR02341 475 EIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAA 515 (519)
T ss_pred cccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence 99999999999999999999999999999999999999864
No 17
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-105 Score=768.89 Aligned_cols=525 Identities=72% Similarity=1.072 Sum_probs=503.6
Q ss_pred CCCCCCCceEeeccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHH
Q 009431 8 PSQPRSSKTESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLV 87 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~ 87 (535)
..+|++. .-+++.++..+.|.+||+|++++++.++|||||+||||||+++.|+++|||||+|||+.|.+-||+++|++
T Consensus 9 ~~~~~~~--~~f~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLv 86 (534)
T KOG0358|consen 9 AAKPTSN--AAFKDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLV 86 (534)
T ss_pred ccCCCCC--ccccccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHH
Confidence 3455544 45678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhc
Q 009431 88 ELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLN 167 (535)
Q Consensus 88 ~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~ 167 (535)
+.+..||.++||||||+|+|+++||+.+.+|+++|+||..|.+.|+.|.+.++++|++++.|++..|++.|.+.+.|++|
T Consensus 87 elS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLn 166 (534)
T KOG0358|consen 87 ELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLN 166 (534)
T ss_pred HhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred CcccchhhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEe
Q 009431 168 SKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQ 247 (535)
Q Consensus 168 sk~~~~~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~ 247 (535)
||+.++|...|+.+.++|+.++.++.+..+.|+.+|+|.|..||.++|+++++|++|+++ ......|+.++++||-++.
T Consensus 167 SKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~-~~~~~gptriekAkIglIQ 245 (534)
T KOG0358|consen 167 SKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQK-ASKSAGPTRIEKAKIGLIQ 245 (534)
T ss_pred HHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeee-cccCCCcchhhhceeeEEE
Confidence 999999999999999999999998766568899999999999999999999999999654 4444479999999999999
Q ss_pred eecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCH
Q 009431 248 FQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVER 327 (535)
Q Consensus 248 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~ 327 (535)
|.+.++|+.+..++.++++.++++++++|++|+.+++++|++.|+||+++|++|-+|+++|+++|||++.+|+++..+.+
T Consensus 246 F~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieR 325 (534)
T KOG0358|consen 246 FQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIER 325 (534)
T ss_pred EEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEE-ecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHH
Q 009431 328 DEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELS-LGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALC 406 (535)
Q Consensus 328 ~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~-~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~ 406 (535)
++++.+|+.+|+.++.+++.++++.+|+++.+++.. .|+.++..+.|+.+-+..+||++||++.-.++|.+|++|||||
T Consensus 326 ediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALC 405 (534)
T KOG0358|consen 326 EDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALC 405 (534)
T ss_pred hhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhH
Confidence 999999999999999999999999999999999885 4666999999988768999999999999999999999999999
Q ss_pred HHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCc
Q 009431 407 VVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEIN 486 (535)
Q Consensus 407 ~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~ 486 (535)
++|+..+.+.++||||+.|+.++..|..++.+..+.+.+++++||+|||.||.+|++|+|++|+.++.+||+.|.+++.+
T Consensus 406 VirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~ 485 (534)
T KOG0358|consen 406 VIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKN 485 (534)
T ss_pred HHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 487 SGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 487 ~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
.|++...|.+.||+++.|+.|+.|-.+++..|+|++.+||+||+|+.++
T Consensus 486 aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~ar 534 (534)
T KOG0358|consen 486 AGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNAR 534 (534)
T ss_pred cceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhcccC
Confidence 9999999999999999999999999999999999999999999999865
No 18
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3e-102 Score=840.06 Aligned_cols=503 Identities=33% Similarity=0.557 Sum_probs=477.6
Q ss_pred ccchH-HHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 22 NKRKE-DIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 22 ~~~~~-~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
..+|. +++..|+.+|..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 12 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDG 91 (531)
T TIGR02346 12 HMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDG 91 (531)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCC
Confidence 45665 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccce-eC-CCCCHHHHHHHHHHHhcCcccchhhhhH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAV-PV-ELSDRDSLVKSASTSLNSKVVSQYSTLL 178 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~-~~-~~~~~~~l~~va~tsl~sk~~~~~~~~l 178 (535)
|||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++ ++ +..+.+.|.++++|+++||+.++ +++|
T Consensus 92 TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~-~~~l 170 (531)
T TIGR02346 92 TNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGN-EDFL 170 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCch-HHHH
Confidence 999999999999999999999999999999999999999999999886 66 33467889999999999999988 9999
Q ss_pred HHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCcccc
Q 009431 179 APLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIE 258 (535)
Q Consensus 179 s~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~ 258 (535)
++++++|+.++++... +.+|++.|+|+++.|++++||++++|++|+++ +. +||+.++||||++++++++..+++.+
T Consensus 171 s~l~~~Ai~~v~~~~~-~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~-~~--~~~k~i~n~kI~l~~~~l~~~~~~~~ 246 (531)
T TIGR02346 171 AQLVAKACSTVMPKNP-ENFNVDNIRVSKIMGGSISNSEVLKGMVFNRE-AE--GSVKRVKNAKVAVFSCPLDTATTETK 246 (531)
T ss_pred HHHHHHHHHHHhhcCC-CcCChhHeeEEEecCCChhhceeEeeeEEecc-CC--CCceeccCCCEEEEecCcCCCcccCc
Confidence 9999999999985421 25788899999999999999999999999765 32 57899999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431 259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338 (535)
Q Consensus 259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 338 (535)
+++.++++.++.++.+.|+++++++++.+.+.|++||+++++| +|.+++||.++||+++++++..+|+|||.+||
T Consensus 247 ~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I-----~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tG 321 (531)
T TIGR02346 247 GTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSV-----GDMALHYCEKYNIMVLKIPSKFELRRLCKTVG 321 (531)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCc-----CHHHHHHHHHCCcEEEecCCHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 009431 339 CLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLI 418 (535)
Q Consensus 339 a~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 418 (535)
|++++++++++++++|+|+.|++.++|+++|.+|+++...++.+||+|||+|+.+++|++|+++||+++++++++++++|
T Consensus 322 a~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vV 401 (531)
T TIGR02346 322 ATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFL 401 (531)
T ss_pred CEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999887448999999999999999999999999999999999998899
Q ss_pred ccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCc--c
Q 009431 419 AGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQ--I 496 (535)
Q Consensus 419 pGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~--~ 496 (535)
||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.++.++|+|+.+|+ +
T Consensus 402 pGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i 481 (531)
T TIGR02346 402 PGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGV 481 (531)
T ss_pred ECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccc
Confidence 99999999999999999888889999999999999999999999999999999999999999877778999999999 5
Q ss_pred cccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 497 TNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 497 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 482 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (531)
T TIGR02346 482 KDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMA 519 (531)
T ss_pred cChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 99999999999999999999999999999999999875
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-101 Score=827.67 Aligned_cols=477 Identities=31% Similarity=0.516 Sum_probs=455.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDG 85 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDG 85 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCC-CCHHHHHHHHHHHhcCcccchhhhhHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVEL-SDRDSLVKSASTSLNSKVVSQYSTLLA 179 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~-~~~~~l~~va~tsl~sk~~~~~~~~ls 179 (535)
|||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++.+++. .+.+.|.++|+++++||+.+.+.++|+
T Consensus 86 TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~ 165 (484)
T cd03342 86 TTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLT 165 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999998864 478899999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccc
Q 009431 180 PLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQ 259 (535)
Q Consensus 180 ~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~ 259 (535)
+++++|+..+++.. +.||+++|+|++++||+++||++++|++|+++ +.++.||+.++||+|++++++|++++++++.
T Consensus 166 ~l~~~A~~~v~~~~--~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~-~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~ 242 (484)
T cd03342 166 EIVVDAVLAIYKPD--EPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHG-ARHPDMPKRVENAYILTCNVSLEYEKTEVNS 242 (484)
T ss_pred HHHHHHHHHHhhcC--CccChhHeEEEEecCCChhhceEEeeEEEecC-CCCCCCCccccCceEEEEeCCCCCCccccCc
Confidence 99999999998643 26888999999999999999999999999665 5678899999999999999999999888776
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 260 SIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 260 ~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
++.++ |||++++| ++.++++|.++||++++++++++|+|||++|||
T Consensus 243 ~~~~~-----------------------------lvi~~~~I-----~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa 288 (484)
T cd03342 243 GFFYS-----------------------------VVINQKGI-----DPPSLDMLAKEGILALRRAKRRNMERLTLACGG 288 (484)
T ss_pred EEEEE-----------------------------EEEeCCCc-----cHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCC
Confidence 65432 99999999 999999999999999999999999999999999
Q ss_pred eeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 009431 340 LPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIA 419 (535)
Q Consensus 340 ~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 419 (535)
++++++++++++++|+|+.|++.++|+++|++|++++. ++.+||+|||+|+.+++|.||+++||+++++++++++.+||
T Consensus 289 ~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vp 367 (484)
T cd03342 289 VAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN-PKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVP 367 (484)
T ss_pred EEecccccCChhhCcccceEEEEEECCeEEEEEECCCC-CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 99999999999999999999999999999999999987 89999999999999999999999999999999999988999
Q ss_pred cCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCccccc
Q 009431 420 GGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNI 499 (535)
Q Consensus 420 GGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~ 499 (535)
|||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|++++.++|+|+.+|++.||
T Consensus 368 GGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~ 447 (484)
T cd03342 368 GAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDP 447 (484)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccch
Confidence 99999999999999998888999999999999999999999999999999999999999998877889999999999999
Q ss_pred ccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 500 LEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 500 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
++.|||||+.+|+++|+.|+|+|++|||||++|+++
T Consensus 448 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 448 ESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred hhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 999999999999999999999999999999999864
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-99 Score=812.26 Aligned_cols=465 Identities=35% Similarity=0.584 Sum_probs=443.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 89 (480)
T cd03337 10 KRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (480)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++..+.+.|.++++|+++||+.++|.+.|++
T Consensus 90 Ttt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~ 169 (480)
T cd03337 90 TTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCN 169 (480)
T ss_pred cchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877889999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCC--Ccccc-cEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccc
Q 009431 181 LAVDSVLSVVDPCKPD--LVDLR-DIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDI 257 (535)
Q Consensus 181 li~~a~~~v~~~~~~~--~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~ 257 (535)
++++|+..++++.... .+|++ +|+|++++|++++||++++|++|+++ +.++.|+++++||+|++++++|++
T Consensus 170 lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~-~~~~~m~~~~~n~kIlll~~~Le~----- 243 (480)
T cd03337 170 LALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKD-VTHPKMRRRIENPRIVLLDCPLEY----- 243 (480)
T ss_pred HHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEecc-CCCCCCCcEecCCCEEEEecCcce-----
Confidence 9999999998643211 35653 59999999999999999999999655 778899999999999999999885
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHh
Q 009431 258 EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTL 337 (535)
Q Consensus 258 ~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~t 337 (535)
||+++++| ++.++++|.++||++++++++++|+|||++|
T Consensus 244 ------------------------------------lvi~~k~I-----~d~al~~L~~~~I~~v~~v~~~~L~rIa~~t 282 (480)
T cd03337 244 ------------------------------------LVITEKGV-----SDLAQHYLVKAGITALRRVRKTDNNRIARAC 282 (480)
T ss_pred ------------------------------------EEEeCCCc-----cHHHHHHHHHCCcEEEEeCCHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999
Q ss_pred CCeeeccccCCCCCCcee-eeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009431 338 NCLPIANIDHFRAEKLGH-ADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRF 416 (535)
Q Consensus 338 Ga~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 416 (535)
||++++++++++++.+|+ |+.+++.++|+++|++|++|+. ++.+||+|||+|+.+++|.||+++||++++++++++++
T Consensus 283 Ga~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~-~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~ 361 (480)
T cd03337 283 GATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKD-PKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPK 361 (480)
T ss_pred CCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999 6778888889999999999987 89999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCceeEEccCCc
Q 009431 417 LIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQG-EINSGINVRKGQ 495 (535)
Q Consensus 417 vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-~~~~Gid~~~~~ 495 (535)
+|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|+.+ +.++|+|+.+|+
T Consensus 362 ~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~ 441 (480)
T cd03337 362 LVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGD 441 (480)
T ss_pred EEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCC
Confidence 9999999999999999999888899999999999999999999999999999999999999999876 678999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhc
Q 009431 496 ITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533 (535)
Q Consensus 496 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 533 (535)
+.||++.|||||+.+|+++|++|+|+|++|||||++|.
T Consensus 442 i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 442 IVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred cccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 99999999999999999999999999999999999985
No 21
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.8e-97 Score=787.86 Aligned_cols=465 Identities=34% Similarity=0.577 Sum_probs=439.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCchh
Q 009431 23 KRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTT 102 (535)
Q Consensus 23 ~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 102 (535)
..+.+++..|+++|..|++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHcccee-C-CCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 103 TVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVP-V-ELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 103 t~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~-~-~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
|+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++ + +..+.+.+.++++|+++||+.+ +.++|++
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~ 162 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSP 162 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHH
Confidence 99999999999999999999999999999999999999999999876 4 4446788999999999999987 6899999
Q ss_pred HHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccce
Q 009431 181 LAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQS 260 (535)
Q Consensus 181 li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~ 260 (535)
++++|+.++++.. .+.|++++|+|++++|++++||++++|++|++ .+ ..+++.++||+|++++++|++
T Consensus 163 l~~~a~~~~~~~~-~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~-~~--~~~~~~~~n~~Ili~~~~Le~-------- 230 (472)
T cd03341 163 LVAEACISVLPEN-IGNFNVDNIRVVKILGGSLEDSKVVRGMVFKR-EP--EGSVKRVKKAKVAVFSCPFDI-------- 230 (472)
T ss_pred HHHHHHHHHhhcc-CCcCChhHeEEEEecCCCcccceEEeeEEEcc-cc--CCCceeccCCcEEEEeccccC--------
Confidence 9999999998642 13688899999999999999999999999953 23 345688999999999999986
Q ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 261 IVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 261 i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
|++||+++++| ++.++++|+++||++++++++++|+|||++|||+
T Consensus 231 ------------------------------g~~lvi~~~~I-----~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ 275 (472)
T cd03341 231 ------------------------------GVNVIVAGGSV-----GDLALHYCNKYGIMVIKINSKFELRRLCRTVGAT 275 (472)
T ss_pred ------------------------------CCeEEEECCCC-----CHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCE
Confidence 89999999999 9999999999999999999999999999999999
Q ss_pred eeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 009431 341 PIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAG 420 (535)
Q Consensus 341 ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpG 420 (535)
+++++++++++.+|+|+.|++.++|+++|++|+++...++.+||+|||+|+.+++|+||+++||+++++++++++++|||
T Consensus 276 ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpG 355 (472)
T cd03341 276 PLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPG 355 (472)
T ss_pred EecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeC
Confidence 99999999999999999999999999999999998654689999999999999999999999999999999999889999
Q ss_pred CChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCC--cccc
Q 009431 421 GGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKG--QITN 498 (535)
Q Consensus 421 GG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~--~~~d 498 (535)
||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.++.++|+|+.+| ++.|
T Consensus 356 GG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d 435 (472)
T cd03341 356 AGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKD 435 (472)
T ss_pred cCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccC
Confidence 99999999999999988888999999999999999999999999999999999999999977777899999999 9999
Q ss_pred cccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 499 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
|++.|||||+.||+++|++|+|+|++|||||++|.++
T Consensus 436 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 472 (472)
T cd03341 436 AKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMAK 472 (472)
T ss_pred hhhccceecHHHHHHHHHHHHHHHHHHhhhcceeecC
Confidence 9999999999999999999999999999999999764
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.8e-96 Score=786.16 Aligned_cols=462 Identities=49% Similarity=0.733 Sum_probs=444.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCch
Q 009431 22 NKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGT 101 (535)
Q Consensus 22 ~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 101 (535)
..++++++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHHH
Q 009431 102 TTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPL 181 (535)
Q Consensus 102 tt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~l 181 (535)
||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++++..+.+.|.++++|+++||+.+.|+++++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l 162 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGEL 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999976668999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccceE
Q 009431 182 AVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSI 261 (535)
Q Consensus 182 i~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~i 261 (535)
+++|+.++++... .++.+.|+|++.+||++.||++++|++|+++ +.++.|++.++||+|++++++|++
T Consensus 163 ~~~Ai~~v~~~~~--~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~-~~~~~m~~~~~n~~Ili~~~~Le~--------- 230 (464)
T cd00309 163 VVDAVLKVGKENG--DVDLGVIRVEKKKGGSLEDSELVVGMVFDKG-YLSPYMPKRLENAKILLLDCKLEY--------- 230 (464)
T ss_pred HHHHHHHhccccC--ccccceEEEEecCCCCcccceeeeeEEEecC-CCCCCCceeecCceEEEEecCcce---------
Confidence 9999999986432 5677899999999999999999999999655 667889999999999999999986
Q ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCee
Q 009431 262 VVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLP 341 (535)
Q Consensus 262 ~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~i 341 (535)
||+++++| ++.++++|.++||++++++++++|+|||++|||++
T Consensus 231 --------------------------------lIi~~~~I-----~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~i 273 (464)
T cd00309 231 --------------------------------VVIAEKGI-----DDEALHYLAKLGIMAVRRVRKEDLERIAKATGATI 273 (464)
T ss_pred --------------------------------EEecCCCc-----CHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEE
Confidence 99999999 99999999999999999999999999999999999
Q ss_pred eccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccC
Q 009431 342 IANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGG 421 (535)
Q Consensus 342 i~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGG 421 (535)
++++++++++.+|+|+.|++.++|+++|++|.+++. ++.+||+|||+|+.+++|+||+++||+++++++++++++||||
T Consensus 274 i~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGG 352 (464)
T cd00309 274 VSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGG 352 (464)
T ss_pred ecccccCCcccCccccEEEEEEEcCeeEEEEEecCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 999999999999999999999999999999999877 8899999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCccccccc
Q 009431 422 GAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILE 501 (535)
Q Consensus 422 G~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~ 501 (535)
|++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|++.|.++..++|+|..+|++.||++
T Consensus 353 Ga~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~ 432 (464)
T cd00309 353 GAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKE 432 (464)
T ss_pred cHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhh
Confidence 99999999999999888899999999999999999999999999999999999999999887778999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHchhhhhc
Q 009431 502 ENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533 (535)
Q Consensus 502 ~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 533 (535)
.|||||+.+|+++++.|+|+|++|||||++|+
T Consensus 433 ~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 433 AGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred ccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 99999999999999999999999999999985
No 23
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-96 Score=780.05 Aligned_cols=501 Identities=40% Similarity=0.577 Sum_probs=476.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..|+.|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++||.|+|+++++++||+++|||
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDG 84 (524)
T COG0459 5 ERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDG 84 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCc
Confidence 67899999999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
|||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++..+.+. +++.|+++||+.+++ +++++
T Consensus 85 TTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i~~ 161 (524)
T COG0459 85 TTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL--KIAITSVASKSANSD-EEIGE 161 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh--hhhhheeeeeeccCh-HHHHH
Confidence 999999999999999999999999999999999999999999999999987533333 889999999998877 99999
Q ss_pred HHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCc-eeeecceEEEEeeecCCCCccccc
Q 009431 181 LAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGP-TRVENAKIAVIQFQISPPKTDIEQ 259 (535)
Q Consensus 181 li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~-~~~~n~~Ill~~~~L~~~~~~~~~ 259 (535)
++++|+.+++... . |++.|.+.+..|+..+|+++++|++||+++++|+.|| +.++||+|+++|++|+..+++++.
T Consensus 162 lv~~Av~~v~~~~---~-d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~ 237 (524)
T COG0459 162 LVVEAVEKVGKEQ---S-DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPL 237 (524)
T ss_pred HHHHHHHHhcccc---c-ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcc
Confidence 9999999999743 2 6789999999999999999999999988899999999 899999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEEcCCccccccchHHHHHHHhcCceeccCCCHHHH-HHHHHH
Q 009431 260 SIVVSDYTQMDRILKEER-NYILGMIKKIKATGCN-VLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEI-EFITKT 336 (535)
Q Consensus 260 ~i~i~~~~~~~~~~~~E~-~~i~~~l~~i~~~~~~-lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L-~~ia~~ 336 (535)
++.+++..++..|.+.|+ +.+..+++.+.+.+.+ +++++++| +|+++++|.+.+|++++++.++++ ++|+++
T Consensus 238 e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi-----~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~ 312 (524)
T COG0459 238 EIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI-----DDLAKAYLEDIAILTGRRVKKEDLGERLAKL 312 (524)
T ss_pred eeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC-----cHHHHHHHHhhcceecceecchhhHHHHHHc
Confidence 999999999999999999 9999999999999999 99999999 999999999999999999999999 899999
Q ss_pred hCCeeeccccCCCCCCcee--eeEEEEEEecceEEEEEecccC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009431 337 LNCLPIANIDHFRAEKLGH--ADLVEELSLGDGKIVKITGIKD-MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVS 413 (535)
Q Consensus 337 tGa~ii~~~~~l~~~~lG~--~~~v~~~~~g~~~~~~~~~~~~-~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 413 (535)
+||++++.++++++..+|. |+.|++.++|++++++|++++. .++.+||++||+|+.+++|++|+++|||+++|++++
T Consensus 313 ~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave 392 (524)
T COG0459 313 GGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVE 392 (524)
T ss_pred cCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999874 378999999999999999999999999999999999
Q ss_pred cCcccccCChhHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEcc
Q 009431 414 KRFLIAGGGAPEIELSRQLGAWAKALSG-MERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVR 492 (535)
Q Consensus 414 ~~~vvpGGG~~E~~ls~~L~~~~~~~~~-~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~ 492 (535)
++++|||||++|++++.+|++++...++ ++++++++|++||+.||++|++|||+|+.+++.+|++.|. ..++|+|..
T Consensus 393 ~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~ 470 (524)
T COG0459 393 EGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAF 470 (524)
T ss_pred cCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceecc
Confidence 9889999999999999999998544555 9999999999999999999999999999999999999765 456999999
Q ss_pred CCcc-cccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 493 KGQI-TNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 493 ~~~~-~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
+|++ .||++.|||||+.||.++|++|+++|.++||+|++|.++
T Consensus 471 ~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~ 514 (524)
T COG0459 471 TGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAK 514 (524)
T ss_pred CCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999 779999999999999999999999999999999999763
No 24
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-97 Score=711.66 Aligned_cols=508 Identities=35% Similarity=0.578 Sum_probs=483.4
Q ss_pred ceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecC--CCCeEEccchHHHhccccccChHHHHHHHH
Q 009431 15 KTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTA--SGEVIITNDGATILNKMEVLQPAAKMLVEL 89 (535)
Q Consensus 15 ~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~ 89 (535)
|+.+++ +.++|+.++...|.++..++++|+|||||+||+||+... .|.+.+||||+|||+++.+.+|+||++++.
T Consensus 3 p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~ 82 (527)
T KOG0363|consen 3 PVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDI 82 (527)
T ss_pred hhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheecc
Confidence 677776 778999999999999999999999999999999999864 367999999999999999999999999999
Q ss_pred HhhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCC---CHHHHHHHHHHHh
Q 009431 90 SKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELS---DRDSLVKSASTSL 166 (535)
Q Consensus 90 ~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~---~~~~l~~va~tsl 166 (535)
++-||.++||||||+++|+++||++|.+|+.+.+||+.|++||+.|...|.+.|.+.++..... =+++|.++++|.+
T Consensus 83 S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL 162 (527)
T KOG0363|consen 83 SKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTL 162 (527)
T ss_pred ccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887654311 1778999999999
Q ss_pred cCcccchhhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEE
Q 009431 167 NSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVI 246 (535)
Q Consensus 167 ~sk~~~~~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~ 246 (535)
+||+++++.++|++++++|+.++... =|++.|+|+|..||.++||++-+|++++++ + .-+.|+.++|++|++-
T Consensus 163 ~SKiLsq~kehFaelavdAV~rLkGs-----~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~-i-gv~qpkriena~iLIA 235 (527)
T KOG0363|consen 163 SSKILSQDKEHFAELAVDAVLRLKGS-----TNLEAIQIIKKLGGKLEDSFLDEGFLLDKK-I-GVNQPKRIENAKILIA 235 (527)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCC-----CCccceeeehhcCCccccccccccceeccc-c-CCCCcccccccceEEe
Confidence 99999999999999999999998753 356789999999999999999999999643 3 3457999999999999
Q ss_pred eeecCCCCccc-cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCC
Q 009431 247 QFQISPPKTDI-EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDV 325 (535)
Q Consensus 247 ~~~L~~~~~~~-~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v 325 (535)
|.+++..|.+. .+.|.+.+...+.++...|++.++.++++|.++|+|+.+..+-| .++-.++|...||+++.+.
T Consensus 236 NT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLi-----YnyPeqLf~dagi~aIEHA 310 (527)
T KOG0363|consen 236 NTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLI-----YNYPEQLFADAGIMAIEHA 310 (527)
T ss_pred cCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHh-----hcCHHHHHhhcCcceeecc
Confidence 99999999997 66899999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 009431 326 ERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDAL 405 (535)
Q Consensus 326 ~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal 405 (535)
+.+-+||++.+||+.|+++|++++...+|+|+.+++..+|++++.+|+|++. +..|||+|||.|++.+||.+|++||||
T Consensus 311 DFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~-GeActIVlrGat~q~LDEaeRslHDAL 389 (527)
T KOG0363|consen 311 DFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL-GEACTIVLRGATQQILDEAERSLHDAL 389 (527)
T ss_pred cchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeeccccc-ccceEEEEecccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 889999999999999999999999999
Q ss_pred HHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCC
Q 009431 406 CVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEI 485 (535)
Q Consensus 406 ~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~ 485 (535)
|++....++.+++.||||.||..+..+.+++...++++..++++|++||..+|.+|+.|+|+|+.+++.+||+.|.++..
T Consensus 390 cVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~ 469 (527)
T KOG0363|consen 390 CVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRT 469 (527)
T ss_pred HHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 486 NSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 486 ~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
.+|+|+.+|++.||.+.||+|++.+|.+.+.+|.|+|.||||+|+||.++
T Consensus 470 t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~a 519 (527)
T KOG0363|consen 470 TMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAA 519 (527)
T ss_pred ccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999864
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.4e-93 Score=770.38 Aligned_cols=482 Identities=40% Similarity=0.666 Sum_probs=459.1
Q ss_pred HHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 009431 39 VADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLIL 118 (535)
Q Consensus 39 l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~l 118 (535)
|+++|++||||+|++|||++..|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++||+++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHHHHHHHHHhccCCCCCCCc
Q 009431 119 LSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLV 198 (535)
Q Consensus 119 i~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~li~~a~~~v~~~~~~~~~ 198 (535)
+++|+||..|++||+.|++.++++|++++++++..+ +.|.++++|++++|+.++|.++|++++++|+ ...+. ++
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~-~~~~~----~~ 154 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAI-KSIKS----NF 154 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHH-HHHTT----TH
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-hhhhhhhcccccccccccchhhhhhhHHHHH-Hhhcc----cc
Confidence 999999999999999999999999999999988422 8999999999999999999999999999999 44332 26
Q ss_pred ccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHH
Q 009431 199 DLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERN 278 (535)
Q Consensus 199 ~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~ 278 (535)
|++.++++++.|++.+||++++|++|+ +.+.+++|++.+++|+|++++++|+++++ .+.++.+++.++++++.++|++
T Consensus 155 ~~~~i~i~~i~g~~~~dS~li~Giv~~-~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 232 (485)
T PF00118_consen 155 DLDNIKIIKIPGGSISDSELINGIVLD-KGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKK 232 (485)
T ss_dssp HGGGEEEEEEESSSSGGEEEESEEEES-SSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHH
T ss_pred cccchhhhhhccccccccccccceeee-ccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhh
Confidence 778899999999999999999999994 45777789999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCeeeccccCCCCCCceeeeE
Q 009431 279 YILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADL 358 (535)
Q Consensus 279 ~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~ 358 (535)
+++++++++.+.|++||+++++| ++.++++|.++||.+++++++++|++|+++|||++++++++++++.+|+|+.
T Consensus 233 ~l~~~~~~i~~~~~~lIi~~~~i-----~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~ 307 (485)
T PF00118_consen 233 YLKKILEKIINLGVNLIISQKSI-----DDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKS 307 (485)
T ss_dssp HHHHHHHHHHTTTSSEEEESSEB-----THHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEE
T ss_pred hhccccceEeeeccceeeeeccc-----ccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhh
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999988999999
Q ss_pred EEEEEecceEEEEEe--cccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 009431 359 VEELSLGDGKIVKIT--GIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWA 436 (535)
Q Consensus 359 v~~~~~g~~~~~~~~--~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~ 436 (535)
+++..+|+++|++|+ ++.. ++.+||+|||+++.+++|++|+++||+++++++++++++|||||++|++|+.+|++++
T Consensus 308 v~~~~i~~~~~~~~~~~~~~~-~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~ 386 (485)
T PF00118_consen 308 VEEREIGNKKYIFIEGIGCLS-SKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYA 386 (485)
T ss_dssp EEEEEETSSEEEEEEEHSESS-SSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccc-cCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhh
Confidence 999999999999999 4655 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHH
Q 009431 437 KALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAIT 516 (535)
Q Consensus 437 ~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~ 516 (535)
+..++++++++++|++||+.||++|++|||+|+.+++++++..|+.+ .++|+|+.+|++.||.+.|||||+.+|+++|+
T Consensus 387 ~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~-~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~ 465 (485)
T PF00118_consen 387 KSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNG-NNYGIDLDTGEIVDMKEAGILDPLLVKISALK 465 (485)
T ss_dssp HCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHH
T ss_pred hcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccc-cccCcCccCCceeccccccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988654 49999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhhcCC
Q 009431 517 LAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 517 ~A~e~a~~iL~iD~ii~~~ 535 (535)
.|+|+|++|||||++|.++
T Consensus 466 ~A~~~a~~iL~id~iI~~~ 484 (485)
T PF00118_consen 466 SAVEIASLILRIDEIIMAK 484 (485)
T ss_dssp HHHHHHHHHHTEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999875
No 26
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.8e-90 Score=744.60 Aligned_cols=459 Identities=26% Similarity=0.374 Sum_probs=420.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhcccc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAA 96 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 96 (535)
...+|.+++..|++++..++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++|+++
T Consensus 4 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 83 (542)
T PRK12849 4 IIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDV 83 (542)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCc
Confidence 4568999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhh
Q 009431 97 AGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 97 ~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (535)
+||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++++|++ +.+.|.++|+|+++ +++
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~~~~l~~va~ts~~------~~~ 155 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--GSEEIAQVATISAN------GDE 155 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcC------ChH
Confidence 9999999999999999999999999999999999999999999999999999887 78889999999876 578
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcce-eeeEeeEEEecCCCCCC------CCceeeecceEEEEeee
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDD-TELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQ 249 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~d-S~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~ 249 (535)
++++++++|+..+++. +.+.+. .|+..+| +++++|++|++++..+. .|++.++||+|+++|+.
T Consensus 156 ~l~~lv~~Av~~v~~~--------g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~ 225 (542)
T PRK12849 156 EIGELIAEAMEKVGKD--------GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKK 225 (542)
T ss_pred HHHHHHHHHHHHhccC--------CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCC
Confidence 9999999999999753 234443 6888876 79999999987755432 26899999999999996
Q ss_pred cCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhc------Cceecc
Q 009431 250 ISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKS------KIMVVK 323 (535)
Q Consensus 250 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~------~I~~v~ 323 (535)
++. + +++.++++++.+.+++|||++++| ++.++++|.++ +|++++
T Consensus 226 i~~-------------~-----------~~~~~~l~~i~~~~~~lvI~~~~I-----~~~al~~l~~~~~~~~~~i~avr 276 (542)
T PRK12849 226 ISS-------------L-----------QDLLPLLEKVAQSGKPLLIIAEDV-----EGEALATLVVNKLRGGLKVAAVK 276 (542)
T ss_pred cCC-------------H-----------HHHHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHhhhhccccEEEEe
Confidence 643 2 346678999999999999999999 99999988877 899998
Q ss_pred CCC-----HHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEecccC----------------
Q 009431 324 DVE-----RDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD---------------- 377 (535)
Q Consensus 324 ~v~-----~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~---------------- 377 (535)
+.+ +++|+|||.+|||++++ ++++++++++|+|+.|++.+ +++++++++.+
T Consensus 277 ~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~ 353 (542)
T PRK12849 277 APGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIE 353 (542)
T ss_pred CCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 777 56699999999999999 68999999999999999764 88899987654
Q ss_pred ------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhc
Q 009431 378 ------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKAL 439 (535)
Q Consensus 378 ------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~ 439 (535)
+++.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|++++ ..
T Consensus 354 ~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~-g~VpGGGa~e~~ls~~L~~~~-~~ 431 (542)
T PRK12849 354 ETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEE-GIVPGGGVALLRAAKALDELA-GL 431 (542)
T ss_pred hcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc-CeecCCCHHHHHHHHHHHHhh-CC
Confidence 1369999999999999999999999999999999999 699999999999999999998 88
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHH
Q 009431 440 SGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAA 519 (535)
Q Consensus 440 ~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~ 519 (535)
++++++++++|++||+.||++|++|||+|+.+++.+|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+
T Consensus 432 ~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~ 507 (542)
T PRK12849 432 NGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAA 507 (542)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864 57999999999999999999999999999999999
Q ss_pred HHHHHHHchhhhhcCC
Q 009431 520 ECVRMILKIDDIVTVR 535 (535)
Q Consensus 520 e~a~~iL~iD~ii~~~ 535 (535)
++|++||+||++|+++
T Consensus 508 e~A~~iL~id~iI~~~ 523 (542)
T PRK12849 508 SVAGLLLTTEALVADK 523 (542)
T ss_pred HHHHHHHhHHHHHhcC
Confidence 9999999999999764
No 27
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.3e-90 Score=744.00 Aligned_cols=461 Identities=26% Similarity=0.396 Sum_probs=423.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhcccc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAA 96 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 96 (535)
+..+|.+++..|++||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +++|+++++++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4568999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhh
Q 009431 97 AGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 97 ~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (535)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.|.++|+|+++ +++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~~~~l~~va~ts~~------~~~ 155 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--DKEEIAQVATISAN------GDE 155 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHhccc------chH
Confidence 9999999999999999999999999999999999999999999999999999987 78889999999876 578
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCC------CCceeeecceEEEEeeec
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQI 250 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~L 250 (535)
++++++++|+..+++. +.|.|.+..| ..+++++++|++|++++.+++ .|++.++||+|+++|+.+
T Consensus 156 ~ls~lv~~Av~~v~~~--------g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i 226 (542)
T PRK00013 156 EIGKLIAEAMEKVGKE--------GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI 226 (542)
T ss_pred HHHHHHHHHHHHhCcC--------CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc
Confidence 9999999999999753 3588887666 778999999999987755432 258899999999999965
Q ss_pred CCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcC------ceeccC
Q 009431 251 SPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSK------IMVVKD 324 (535)
Q Consensus 251 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~------I~~v~~ 324 (535)
+. + +++.++++++.+.|++|||++++| ++.++++|..++ |+++++
T Consensus 227 ~~-------------~-----------~~l~~~l~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~~~g~~~i~avr~ 277 (542)
T PRK00013 227 SN-------------I-----------QDLLPVLEQVAQSGKPLLIIAEDV-----EGEALATLVVNKLRGTLKVVAVKA 277 (542)
T ss_pred CC-------------H-----------HHHHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHcCCcccceEEEEec
Confidence 43 2 345688999999999999999999 999999998876 888887
Q ss_pred CC-----HHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEecccC-----------------
Q 009431 325 VE-----RDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD----------------- 377 (535)
Q Consensus 325 v~-----~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~----------------- 377 (535)
.+ +++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|+++..
T Consensus 278 ~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~ 354 (542)
T PRK00013 278 PGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGDKEAIKARVAQIKAQIEE 354 (542)
T ss_pred CCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 75 89999999999999999 79999999999999999874 88999988754
Q ss_pred -----------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcC
Q 009431 378 -----------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALS 440 (535)
Q Consensus 378 -----------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~ 440 (535)
+++.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|+++ ...+
T Consensus 355 ~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~-g~VpGGGa~e~~~s~~L~~~-~~~~ 432 (542)
T PRK00013 355 TTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEE-GIVPGGGVALLRAAPALEAL-KGLN 432 (542)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CcccCcHHHHHHHHHHHHHh-cCCC
Confidence 1238899999999999999999999999999999999 69999999999999999988 6788
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHHH
Q 009431 441 GMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAE 520 (535)
Q Consensus 441 ~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e 520 (535)
+++++++++|++||+.||++|++|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.||.++|+.|++
T Consensus 433 ~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~ 509 (542)
T PRK00013 433 GDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAAS 509 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877 4579999999999999999999999999999999999
Q ss_pred HHHHHHchhhhhcCC
Q 009431 521 CVRMILKIDDIVTVR 535 (535)
Q Consensus 521 ~a~~iL~iD~ii~~~ 535 (535)
+|++||+||++|+.+
T Consensus 510 ~a~~iL~id~iI~~~ 524 (542)
T PRK00013 510 VAGLLLTTEAVVADK 524 (542)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999764
No 28
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.2e-89 Score=741.20 Aligned_cols=460 Identities=25% Similarity=0.375 Sum_probs=421.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhcccc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAA 96 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 96 (535)
+..+|.+++..|+++|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +++|+++++++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 7788999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhh
Q 009431 97 AGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 97 ~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (535)
+||||||+++||++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.|.++|+|++++ ++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~~------~~ 167 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--TKEDILNVATISANG------DV 167 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHcCC------hH
Confidence 9999999999999999999999999999999999999999999999999999987 788899999999874 57
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCccee-eeEeeEEEecCCCCCC------CCceeeecceEEEEeee
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDT-ELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQ 249 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~ 249 (535)
++++++++|+..+++. +. |.+..|++++|| ++++|++|++++.++. .|++.++||+|+++|++
T Consensus 168 ~l~~li~eAv~~vg~~--------g~--I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~ 237 (555)
T PTZ00114 168 EIGSLIADAMDKVGKD--------GT--ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKK 237 (555)
T ss_pred HHHHHHHHHHHHhCcC--------Cc--EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCC
Confidence 8999999999999753 23 444689999998 8999999987765442 26899999999999999
Q ss_pred cCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcC------ceecc
Q 009431 250 ISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSK------IMVVK 323 (535)
Q Consensus 250 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~------I~~v~ 323 (535)
|+.. +.+.++++++.+.|+||||++++| ++.++++|..++ |++++
T Consensus 238 L~~~------------------------~~i~~~le~i~~~~~~llI~~~~i-----~~~al~~L~~n~~~g~~~i~avk 288 (555)
T PTZ00114 238 ISSI------------------------QSILPILEHAVKNKRPLLIIAEDV-----EGEALQTLIINKLRGGLKVCAVK 288 (555)
T ss_pred CCCH------------------------HHHHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHhCCCCceEEEEEe
Confidence 9832 347788999999999999999999 888888888775 88885
Q ss_pred C-----CCHHHHHHHHHHhCCeeeccc------cCCCCCCceeeeEEEEEEecceEEEEEecccC---------------
Q 009431 324 D-----VERDEIEFITKTLNCLPIANI------DHFRAEKLGHADLVEELSLGDGKIVKITGIKD--------------- 377 (535)
Q Consensus 324 ~-----v~~~~L~~ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~--------------- 377 (535)
+ +++++|+|||.+|||+++++. ++++++++|+|+.|++.+ +++++++++..
T Consensus 289 ~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~ 365 (555)
T PTZ00114 289 APGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQI 365 (555)
T ss_pred cCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHH
Confidence 5 788999999999999999997 788888999999999987 56666665430
Q ss_pred -------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHh-
Q 009431 378 -------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAK- 437 (535)
Q Consensus 378 -------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~- 437 (535)
+++.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|++++.
T Consensus 366 ~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~-gvVpGGGa~e~~~s~~L~~~~~~ 444 (555)
T PTZ00114 366 ERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEE-GIVPGGGVALLRASKLLDKLEED 444 (555)
T ss_pred HhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc-CcccCCcHHHHHHHHHHHHHhhc
Confidence 3789999999999999999999999999999999997 6999999999999999999875
Q ss_pred -hcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHH
Q 009431 438 -ALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAIT 516 (535)
Q Consensus 438 -~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~ 516 (535)
..++++++++++|++||+.||++|++|||+|+.+++.+|++ .+++++|||+.+|++.||++.|||||+.||.++|+
T Consensus 445 ~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~ 521 (555)
T PTZ00114 445 NELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALV 521 (555)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHH
Confidence 57889999999999999999999999999999999999976 35678999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhhcC
Q 009431 517 LAAECVRMILKIDDIVTV 534 (535)
Q Consensus 517 ~A~e~a~~iL~iD~ii~~ 534 (535)
.|+++|++||+||++|++
T Consensus 522 ~A~~~A~~iL~id~iI~~ 539 (555)
T PTZ00114 522 DAASVASLMLTTEAAIVD 539 (555)
T ss_pred HHHHHHHHHHhHHHHHHh
Confidence 999999999999999876
No 29
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.9e-89 Score=738.80 Aligned_cols=460 Identities=25% Similarity=0.362 Sum_probs=421.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhcccc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAA 96 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 96 (535)
...++.+++..|++++..++++|++||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 4567899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhh
Q 009431 97 AGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 97 ~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (535)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++++++++ +++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~--~~~~l~~va~~s~~------~~~ 156 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT--TNAEIAQVATISAN------GDA 156 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcc------ChH
Confidence 9999999999999999999999999999999999999999999999999999987 77889999988874 679
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCC------CCceeeecceEEEEeeec
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQI 250 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~L 250 (535)
+|++++++|+..+++. +.|.|.+.. +...++++++|++|++++.++. .|++.++||+|+++|+++
T Consensus 157 ~l~~lv~~Av~~vg~~--------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i 227 (541)
T PRK12851 157 EIGRLVAEAMEKVGNE--------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKI 227 (541)
T ss_pred HHHHHHHHHHHHhccc--------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCc
Confidence 9999999999999753 345666654 5677899999999987765542 389999999999999986
Q ss_pred CCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCc------eecc-
Q 009431 251 SPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKI------MVVK- 323 (535)
Q Consensus 251 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I------~~v~- 323 (535)
+. . +.+.++++.+.+.|++|||++++| ++.++++|..++| ++++
T Consensus 228 ~~-------------~-----------~~i~~~l~~i~~~~~~lvi~~~~I-----~~~al~~l~~n~i~g~~~i~av~~ 278 (541)
T PRK12851 228 SN-------------L-----------QDLLPVLEAVVQSGKPLLIIAEDV-----EGEALATLVVNKLRGGLKVAAVKA 278 (541)
T ss_pred Cc-------------H-----------HHHHHHHHHHHHhCcCEEEECCCC-----ChHHHHHHHHcCCcCceeEEEEec
Confidence 42 1 347888999999999999999999 9999999998886 5555
Q ss_pred ----CCCHHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEecccCC----------------
Q 009431 324 ----DVERDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDM---------------- 378 (535)
Q Consensus 324 ----~v~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~---------------- 378 (535)
++++++|+|||++|||++++ ++++++++++|+|+.|++.+ ++++++.++...
T Consensus 279 p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~ 355 (541)
T PRK12851 279 PGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEE 355 (541)
T ss_pred CccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 59999999999999999999 68889988999999999886 788999886541
Q ss_pred ------------------CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcC
Q 009431 379 ------------------GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALS 440 (535)
Q Consensus 379 ------------------~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~ 440 (535)
++.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|++++.. +
T Consensus 356 ~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~-g~VpGGGa~e~~~s~~L~~~~~~-~ 433 (541)
T PRK12851 356 TTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRAVKALDKLETA-N 433 (541)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CcccCchHHHHHHHHHHHHHhcC-C
Confidence 248899999999999999999999999999999999 69999999999999999998876 8
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHHH
Q 009431 441 GMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAE 520 (535)
Q Consensus 441 ~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e 520 (535)
+++++++++|++||+.||++|++|||+|+.+++.+|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|
T Consensus 434 ~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e 509 (541)
T PRK12851 434 GDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAAS 509 (541)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998865 379999999999999999999999999999999999
Q ss_pred HHHHHHchhhhhcCC
Q 009431 521 CVRMILKIDDIVTVR 535 (535)
Q Consensus 521 ~a~~iL~iD~ii~~~ 535 (535)
+|++||+||++|+.+
T Consensus 510 ~A~~iL~id~iI~~~ 524 (541)
T PRK12851 510 VAGLLLTTEAMVAEK 524 (541)
T ss_pred HHHHHHhHHHhhhcC
Confidence 999999999999763
No 30
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.8e-89 Score=733.27 Aligned_cols=456 Identities=27% Similarity=0.400 Sum_probs=420.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhcccc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAA 96 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 96 (535)
+..+|.+++..|+++|..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|+++++++|+++
T Consensus 2 ~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 81 (520)
T cd03344 2 DIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 81 (520)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccc
Confidence 3467899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhh
Q 009431 97 AGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 97 ~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (535)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+.|.++|+|++++ ++
T Consensus 82 ~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~~~~l~~va~ts~~~------~~ 153 (520)
T cd03344 82 AGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--TKEEIAQVATISANG------DE 153 (520)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcCC------hH
Confidence 9999999999999999999999999999999999999999999999999999987 888999999999985 68
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcce-eeeEeeEEEecCCCCCCC-------CceeeecceEEEEee
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDD-TELVKGLVFDKKASHAAG-------GPTRVENAKIAVIQF 248 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~d-S~li~Giv~~~~~~~~~~-------~~~~~~n~~Ill~~~ 248 (535)
++++++++|+..++.. +.|.+ .+|++.+| +++++|++|++++.. ++ |++.++||+|+++|+
T Consensus 154 ~l~~lv~~A~~~v~~~--------~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~-~~~~~~~~~~~~~~~n~~Ili~d~ 222 (520)
T cd03344 154 EIGELIAEAMEKVGKD--------GVITV--EEGKTLETELEVVEGMQFDRGYLS-PYFVTDPEKMEVELENPYILLTDK 222 (520)
T ss_pred HHHHHHHHHHHHhccC--------CcEEE--EeCCCcceeEEEEeeEEecCCCCC-CccccCcccCeEEeeCCEEEEECC
Confidence 9999999999998753 24555 47888888 799999999777554 33 557899999999999
Q ss_pred ecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCc------eec
Q 009431 249 QISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKI------MVV 322 (535)
Q Consensus 249 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I------~~v 322 (535)
+++.. +++.++++++.+.|+||||++++| ++.++++|.++++ +++
T Consensus 223 ~l~~~------------------------~~l~~~l~~i~~~~~~lvi~~~~i-----~~~al~~l~~~~i~~~~~v~av 273 (520)
T cd03344 223 KISSI------------------------QELLPILELVAKAGRPLLIIAEDV-----EGEALATLVVNKLRGGLKVCAV 273 (520)
T ss_pred CCCCH------------------------HHHHHHHHHHHhhCCCEEEEcCCC-----CHHHHHHHHHcCCccCceEEEE
Confidence 97542 346778999999999999999999 9999999999888 665
Q ss_pred c-----CCCHHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEecccCC--------------
Q 009431 323 K-----DVERDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDM-------------- 378 (535)
Q Consensus 323 ~-----~v~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-------------- 378 (535)
+ ++++++|+|||++|||++++ ++++++++++|+|+.|++.+ ++++++.++...
T Consensus 274 k~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~ 350 (520)
T cd03344 274 KAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQI 350 (520)
T ss_pred eCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4 55999999999999999999 78899989999999999876 788999877541
Q ss_pred --------------------CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhh
Q 009431 379 --------------------GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438 (535)
Q Consensus 379 --------------------~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~ 438 (535)
++.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|++++.
T Consensus 351 ~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~-g~VpGGGa~e~~~s~~L~~~~~- 428 (520)
T cd03344 351 EETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEE-GIVPGGGVALLRASPALDKLKA- 428 (520)
T ss_pred HhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCCcHHHHHHHHHHHHhcc-
Confidence 369999999999999999999999999999999999 6999999999999999999987
Q ss_pred cCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 009431 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLA 518 (535)
Q Consensus 439 ~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A 518 (535)
.++++++++++|++||+.||++|++|||+|+.+++.+|++.|. ++|+|+.+|++.||++.|||||+.+|.++|+.|
T Consensus 429 ~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A 504 (520)
T cd03344 429 LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNA 504 (520)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCCcccchHhccCeecHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988654 799999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhhc
Q 009431 519 AECVRMILKIDDIVT 533 (535)
Q Consensus 519 ~e~a~~iL~iD~ii~ 533 (535)
+++|++||+||.+|.
T Consensus 505 ~~~a~~iL~id~~i~ 519 (520)
T cd03344 505 ASVASLLLTTEALVV 519 (520)
T ss_pred HHHHHHHHhhheEEe
Confidence 999999999999885
No 31
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-89 Score=685.85 Aligned_cols=499 Identities=31% Similarity=0.511 Sum_probs=467.5
Q ss_pred cccch-HHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCC
Q 009431 21 DNKRK-EDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGD 99 (535)
Q Consensus 21 ~~~~~-~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 99 (535)
.+.+| +++...|++||++++++++|+|||+||+||++|+.|++.+|||.+||+++|+++||+++|++++++.|+++.||
T Consensus 19 r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGD 98 (537)
T KOG0362|consen 19 RSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGD 98 (537)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCC
Confidence 34444 56778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHcccee--CCCCCHHHHHHHHHHHhcCcccchhhhh
Q 009431 100 GTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVP--VELSDRDSLVKSASTSLNSKVVSQYSTL 177 (535)
Q Consensus 100 Gttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~--~~~~~~~~l~~va~tsl~sk~~~~~~~~ 177 (535)
||+++|+|+++||++|.+||..|++|.+|++||+.|.+.+++.|+++.+. .+..|.+ .+++++++||... ..++
T Consensus 99 gtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~-~ed~ 174 (537)
T KOG0362|consen 99 GTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYG-NEDF 174 (537)
T ss_pred CceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcc-hHHH
Confidence 99999999999999999999999999999999999999999999997543 1222444 7889999988755 4679
Q ss_pred HHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccc
Q 009431 178 LAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDI 257 (535)
Q Consensus 178 ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~ 257 (535)
+++++++|+..+.+. . .|+.++|+|+|+.|+++.+|+++.|++| ++ .+.+.++..+.+||++++||++...+++
T Consensus 175 l~~lVa~ac~si~p~-~--~FnvdnIrVcKi~Gg~l~~S~Vv~GmVf-kr--~~eG~v~~ak~arvAvf~cP~d~~~TEt 248 (537)
T KOG0362|consen 175 LTKLVAKACVSILPL-M--SFNVDNIRVCKILGGGLEDSCVVCGMVF-KR--DPEGEVKSAKDARVAVFACPFDIAQTET 248 (537)
T ss_pred HHHHHHHHHHhhccc-c--cccccceEEEEEecCCcccceeeEEEEe-cc--ccCCcccccccceeEEEecCCCcccccC
Confidence 999999999999986 2 4888999999999999999999999999 43 4556668888999999999999999999
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHh
Q 009431 258 EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTL 337 (535)
Q Consensus 258 ~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~t 337 (535)
++++.+++++++.+|.+.|+..+..+++.|...|+++|++.+.+ ++++++|+++++|++++.-++.||.|+|+..
T Consensus 249 kgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V-----~em~Lhflnky~ImVlqi~Sk~eLrrlcrtv 323 (537)
T KOG0362|consen 249 KGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKV-----DEMTLHFLNKYKIMVLQINSKFDLRRLCRTV 323 (537)
T ss_pred cceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCcc-----chhhhhhhccccEEEEEeccHhhHHHHHHHc
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 009431 338 NCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFL 417 (535)
Q Consensus 338 Ga~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~v 417 (535)
||++++++..+.+..+|+|++|...++|+.+++.|+.....+++.|++|||+++..+|+.||+++|++++.+...+++++
T Consensus 324 GA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rL 403 (537)
T KOG0362|consen 324 GATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRL 403 (537)
T ss_pred CCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCcc
Confidence 99999999999999999999999999999999999875544789999999999999999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCC-cc
Q 009431 418 IAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKG-QI 496 (535)
Q Consensus 418 vpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~-~~ 496 (535)
+||+|++|++|++.|.+++..+++..|++++.|++||+.+|++|++|+|++..+++.++...|. +..+.|+|+..+ ..
T Consensus 404 lpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~-~g~~~g~di~~e~~~ 482 (537)
T KOG0362|consen 404 LPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ-GGKNLGMDIEAEGGT 482 (537)
T ss_pred ccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-CCCcceeeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 556789998876 58
Q ss_pred cccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 497 TNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 497 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
.|+.++||||-+..|.++++.|+|+|+++|++|+||++|
T Consensus 483 ~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak 521 (537)
T KOG0362|consen 483 IDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAK 521 (537)
T ss_pred cChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEec
Confidence 999999999999999999999999999999999999986
No 32
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.4e-88 Score=732.62 Aligned_cols=461 Identities=23% Similarity=0.354 Sum_probs=418.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChH----HHHHHHHHhhccc
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPA----AKMLVELSKSQDA 95 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~ 95 (535)
+...+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+++++++|++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~ 83 (544)
T PRK12850 4 KEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTND 83 (544)
T ss_pred ceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcc
Confidence 356788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhh
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (535)
++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++ +.+.|.+++++++++ +
T Consensus 84 e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~~------~ 155 (544)
T PRK12850 84 LAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--SSKEIAQVATISANG------D 155 (544)
T ss_pred hhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcCC------H
Confidence 99999999999999999999999999999999999999999999999999999887 788899999998774 6
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCC------CCceeeecceEEEEeee
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQ 249 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~ 249 (535)
+.+++++++|+..+++.. .++++.+ +..| +++++++|++|++++.++. .|++.++||+|+++|+.
T Consensus 156 ~~l~~lv~eAv~~vg~~g---~i~v~~~---~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~ 226 (544)
T PRK12850 156 ESIGEMIAEAMDKVGKEG---VITVEEA---KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKK 226 (544)
T ss_pred HHHHHHHHHHHHHhcccC---ceeeEEc---cccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecc
Confidence 899999999999997531 2333221 2233 5889999999977755432 25899999999999996
Q ss_pred cCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCc------eecc
Q 009431 250 ISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKI------MVVK 323 (535)
Q Consensus 250 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I------~~v~ 323 (535)
++. . +.+.++++.+.+.|++|||++++| ++.++++|.+++| ++++
T Consensus 227 i~~-------------~-----------~~i~~~l~~i~~~g~~lvI~~~~I-----~d~al~~l~~n~i~~~~~~~avk 277 (544)
T PRK12850 227 ISN-------------L-----------QDLLPILEAVVQSGRPLLIIAEDV-----EGEALATLVVNKLRGGLKSVAVK 277 (544)
T ss_pred cCC-------------H-----------HHHHHHHHHHHHhCCCEEEECCCC-----ChHHHHHHHHcCCcccceEEEEe
Confidence 532 1 347889999999999999999999 9999999999998 7766
Q ss_pred C-----CCHHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEecccC----------------
Q 009431 324 D-----VERDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD---------------- 377 (535)
Q Consensus 324 ~-----v~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~---------------- 377 (535)
+ +++++|+|||++|||++++ ++++++++++|+|+.|++.+ +++++|+++..
T Consensus 278 ~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~ 354 (544)
T PRK12850 278 APGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIE 354 (544)
T ss_pred CCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 5 9999999999999999999 68999999999999999875 78899987654
Q ss_pred ------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhc
Q 009431 378 ------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKAL 439 (535)
Q Consensus 378 ------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~ 439 (535)
+++.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|+++ +..
T Consensus 355 ~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~-g~VpGGGa~e~~~s~~L~~~-~~~ 432 (544)
T PRK12850 355 ETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRARSALRGL-KGA 432 (544)
T ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCcHHHHHHHHHHHhc-cCC
Confidence 2358999999999999999999999999999999999 79999999999999999988 677
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHH
Q 009431 440 SGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAA 519 (535)
Q Consensus 440 ~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~ 519 (535)
++++++++++|++||+.||++|++|||+|+.+++.+|++.| .++|+|..+|++.||++.|||||+.||.++|+.|+
T Consensus 433 ~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (544)
T PRK12850 433 NADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAA 508 (544)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999998764 47899999999999999999999999999999999
Q ss_pred HHHHHHHchhhhhcCC
Q 009431 520 ECVRMILKIDDIVTVR 535 (535)
Q Consensus 520 e~a~~iL~iD~ii~~~ 535 (535)
++|++|||||++|+++
T Consensus 509 ~~a~~iL~id~iI~~~ 524 (544)
T PRK12850 509 SIAALLITTEAMVAEA 524 (544)
T ss_pred HHHHHHHhHHHhhccC
Confidence 9999999999998764
No 33
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.5e-88 Score=734.11 Aligned_cols=461 Identities=21% Similarity=0.323 Sum_probs=419.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccc----cChHHHHHHHHHhhccc
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEV----LQPAAKMLVELSKSQDA 95 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~----~hP~a~ll~~~~~~~~~ 95 (535)
++..+|.+++..|++++..++++|++||||+||+|||+++.|+++|||||+||+++|++ +||+++|+++++++|++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~ 83 (545)
T PRK12852 4 KDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTND 83 (545)
T ss_pred chhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCc
Confidence 35668899999999999999999999999999999999999999999999999999999 59999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhh
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (535)
++||||||+++||++||+++.+|+++|+||..|++||+.|++.++++|+++++|++ +.+.+.+++++++++ +
T Consensus 84 e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--~~~~l~~va~~s~~~------~ 155 (545)
T PRK12852 84 LAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA--SSAEIAQVGTISANG------D 155 (545)
T ss_pred eecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHhhhcCC------h
Confidence 99999999999999999999999999999999999999999999999999999987 566799999998875 5
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCc-ceeeeEeeEEEecCCCCCC------CCceeeecceEEEEee
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTV-DDTELVKGLVFDKKASHAA------GGPTRVENAKIAVIQF 248 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~-~dS~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~ 248 (535)
+++++++++|+.++++. +.|.+. .|+.. .++++++|+.|++++.+++ .|+..++||+|+++++
T Consensus 156 ~~l~~li~eA~~~vg~~--------g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~ 225 (545)
T PRK12852 156 AAIGKMIAQAMQKVGNE--------GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEK 225 (545)
T ss_pred HHHHHHHHHHHHHhccC--------Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecC
Confidence 89999999999999853 245554 37765 6899999999988876653 3889999999999988
Q ss_pred ecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhc------Cceec
Q 009431 249 QISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKS------KIMVV 322 (535)
Q Consensus 249 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~------~I~~v 322 (535)
.++.. +++.++++.+.+.++||||++++| ++.++++|..+ +|+++
T Consensus 226 ~i~~~------------------------~~i~~~l~~i~~~g~~lvI~~~~i-----~~~al~~l~~nk~~~~~~i~av 276 (545)
T PRK12852 226 KLSGL------------------------QAMLPVLEAVVQSGKPLLIIAEDV-----EGEALATLVVNRLRGGLKVAAV 276 (545)
T ss_pred ccCCH------------------------HHHHHHHHHHHHhCcCEEEECCCC-----cHHHHHHHHHhcccccceEEEE
Confidence 65431 467889999999999999999999 88888888764 78888
Q ss_pred cCC-----CHHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEecccC---------------
Q 009431 323 KDV-----ERDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD--------------- 377 (535)
Q Consensus 323 ~~v-----~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~--------------- 377 (535)
++. ++++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.++..
T Consensus 277 ~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~ 353 (545)
T PRK12852 277 KAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQI 353 (545)
T ss_pred ecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 754 499999999999999999 68999999999999999886 68888887643
Q ss_pred -------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhh
Q 009431 378 -------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438 (535)
Q Consensus 378 -------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~ 438 (535)
+++.+||+|||+|+.+++|+||+++||++++++++++ ++|||||++|++++.+|++++..
T Consensus 354 ~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~-g~VpGGGa~e~~~s~~L~~~~~~ 432 (545)
T PRK12852 354 EETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQE-GIVPGGGVALLRAKKAVGRINND 432 (545)
T ss_pred HhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCchHHHHHHHHHHHHhhcC
Confidence 1478999999999999999999999999999999999 69999999999999999998876
Q ss_pred cCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 009431 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLA 518 (535)
Q Consensus 439 ~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A 518 (535)
++++++++++|++||+.||++|++|||+|+.+++.+|++.| ++++|||+.+|++.||++.|||||+.+|.++|+.|
T Consensus 433 -~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A 508 (545)
T PRK12852 433 -NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDA 508 (545)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHH
Confidence 78899999999999999999999999999999999998876 36799999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhhcCC
Q 009431 519 AECVRMILKIDDIVTVR 535 (535)
Q Consensus 519 ~e~a~~iL~iD~ii~~~ 535 (535)
+|+|++||+||++|+.+
T Consensus 509 ~e~a~~iL~id~iI~~~ 525 (545)
T PRK12852 509 ASVAGLLVTTEAMVAEL 525 (545)
T ss_pred HHHHHHHHhHHHHhhcC
Confidence 99999999999999753
No 34
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-91 Score=686.60 Aligned_cols=513 Identities=31% Similarity=0.509 Sum_probs=496.2
Q ss_pred CceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHH
Q 009431 14 SKTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELS 90 (535)
Q Consensus 14 ~~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~ 90 (535)
+|++++. .++.|..++..|++|++++++++++|+||+.|.||+.++.|.+..||||..||+++++.||+|+-+.+.+
T Consensus 3 apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~ 82 (527)
T KOG0364|consen 3 APVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELS 82 (527)
T ss_pred CceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhh
Confidence 4666654 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcc
Q 009431 91 KSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKV 170 (535)
Q Consensus 91 ~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~ 170 (535)
.+||+++||||||+++|++++|.++..++++++||..|+++|..|++.++..++++++|+|.+|...+..++.++..+|+
T Consensus 83 rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~ 162 (527)
T KOG0364|consen 83 RTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKF 162 (527)
T ss_pred hcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cchhhhhHHHHHHHHHHhccCCCCCCCccc-ccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeee
Q 009431 171 VSQYSTLLAPLAVDSVLSVVDPCKPDLVDL-RDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQ 249 (535)
Q Consensus 171 ~~~~~~~ls~li~~a~~~v~~~~~~~~~~~-~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~ 249 (535)
.++|....+++..+|+..++...+ ..||+ .+.+++|++||.+.+|++++|+.+ ++.+.|+.|++.++||+|+++||+
T Consensus 163 ~~~~~~~~~~lal~avk~V~~~~g-~e~dik~y~kveKvpgg~l~~s~vl~Gv~~-nkdv~Hpkmrr~IenprivLlD~~ 240 (527)
T KOG0364|consen 163 NSRWSDLICNLALDAVKTVGVENG-REIDIKRYAKVEKVPGGLLEDSCVLKGVMI-NKDVTHPKMRRAIENPRIVLLDCP 240 (527)
T ss_pred hhhhcchhhhHHHHHHHHhhhccC-ceechhhhccccccCcccccccceecceee-ccccCcHHHHHHhhcCcEEEecCC
Confidence 999999999999999999997633 26887 899999999999999999999999 777999999999999999999999
Q ss_pred cCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHH
Q 009431 250 ISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDE 329 (535)
Q Consensus 250 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~ 329 (535)
|+|.+-+.++++.+...+++...++.|++++..+++.+....++||++.+++ +|++++|+.+.||.+++++++.|
T Consensus 241 LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~-----sdla~hyl~k~~iT~~rr~rKtD 315 (527)
T KOG0364|consen 241 LEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGV-----SDLAQHYLLKANITAIRRLRKTD 315 (527)
T ss_pred ccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccch-----hHHHHHHHHhcCchhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHhCCeeeccccCCCCCCcee-eeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009431 330 IEFITKTLNCLPIANIDHFRAEKLGH-ADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVV 408 (535)
Q Consensus 330 L~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 408 (535)
-.|++++|||+++++.+++.+.+.|. |+.+++.++|+++|+||..|++ ++.|||++||||..+++|.+|.++||+.+.
T Consensus 316 n~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~-pkaCtillrg~skdil~e~ernlqda~~va 394 (527)
T KOG0364|consen 316 NNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKE-PKACTILLRGPSKDILNEVERNLQDAMGVA 394 (527)
T ss_pred cchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCC-CcceEEEeccCchhHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999996 8899999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCcee
Q 009431 409 RCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSG 488 (535)
Q Consensus 409 ~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~G 488 (535)
|+.+.+|.++|||||+||.+|+.|+..+...++-++..+.+.+.||+.+||+|++|||.+++..+..+++.|..+...+|
T Consensus 395 rn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~g 474 (527)
T KOG0364|consen 395 RNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWG 474 (527)
T ss_pred HHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeec
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999888999
Q ss_pred EEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 489 INVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 489 id~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
+|..+|.+.||.+.++|+|..+|.+..++|++.++++||||+|+..
T Consensus 475 i~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg 520 (527)
T KOG0364|consen 475 IDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSG 520 (527)
T ss_pred ccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeee
Confidence 9999999999999999999999999999999999999999999865
No 35
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.1e-88 Score=729.79 Aligned_cols=458 Identities=25% Similarity=0.371 Sum_probs=415.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhcccc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDAA 96 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 96 (535)
...+|.+++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +++|+++++++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 4568899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhh
Q 009431 97 AGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 97 ~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (535)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.|.++++++.+ +++
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~~~~l~~va~ts~~------~~~ 154 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--GKKEIAQVATISAN------NDE 154 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcc------ChH
Confidence 9999999999999999999999999999999999999999999999999999987 78899999999876 578
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCc-ceeeeEeeEEEecCCCCCC------CCceeeecceEEEEeee
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTV-DDTELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQ 249 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~-~dS~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~ 249 (535)
++++++++|+..+++. +.|.|.+ |+.. +++++++|++|++++.++. .|++.++||+|+++|+.
T Consensus 155 ~l~~lv~~A~~~v~~~--------~~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~ 224 (524)
T TIGR02348 155 EIGSLIAEAMEKVGKD--------GVITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKK 224 (524)
T ss_pred HHHHHHHHHHHHhCcC--------CcEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCC
Confidence 9999999999998753 2355543 6666 6799999999977755432 15889999999999997
Q ss_pred cCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhc------Cceecc
Q 009431 250 ISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKS------KIMVVK 323 (535)
Q Consensus 250 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~------~I~~v~ 323 (535)
++.. +++.++++.+.+.|+||||++++| ++.++++|..+ +|++++
T Consensus 225 i~~~------------------------~~i~~~l~~i~~~g~~lvi~~~~i-----~~~al~~l~~n~~~~~~~i~avr 275 (524)
T TIGR02348 225 ISNI------------------------KDLLPLLEKVAQSGKPLLIIAEDV-----EGEALATLVVNKLRGTLNVCAVK 275 (524)
T ss_pred cCCH------------------------HHHHHHHHHHHHhCcCEEEECCCC-----ChHHHHHHHHhhcccccceEEEE
Confidence 6532 346888999999999999999999 88888888765 788987
Q ss_pred CCC-----HHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEecccC----------------
Q 009431 324 DVE-----RDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD---------------- 377 (535)
Q Consensus 324 ~v~-----~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~---------------- 377 (535)
+.+ +++|+|||++|||++++ +++++++++||+|+.|++.+ +++++++++..
T Consensus 276 ~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~ 352 (524)
T TIGR02348 276 APGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIE 352 (524)
T ss_pred CCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 664 48999999999999999 89999999999999999875 78889987643
Q ss_pred ------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhc
Q 009431 378 ------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKAL 439 (535)
Q Consensus 378 ------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~ 439 (535)
+++.+||+|||+|+.+++|++|+++||++++|+++++ ++|||||++|++++.+|++ +...
T Consensus 353 ~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~-g~VpGGGa~e~~~s~~L~~-~~~~ 430 (524)
T TIGR02348 353 ETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEE-GIVPGGGVALLRAAAALEG-LKGD 430 (524)
T ss_pred hcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCcHHHHHHHHHHHH-hccC
Confidence 2347899999999999999999999999999999999 6999999999999999998 6778
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHH
Q 009431 440 SGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAA 519 (535)
Q Consensus 440 ~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~ 519 (535)
++++++++++|++||+.||++|++|||+|+.+++.+|++. .+ ++|||+.+|++.||++.|||||+.||.++|++|+
T Consensus 431 ~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 506 (524)
T TIGR02348 431 NEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAA 506 (524)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999864 22 4899999999999999999999999999999999
Q ss_pred HHHHHHHchhhhhcC
Q 009431 520 ECVRMILKIDDIVTV 534 (535)
Q Consensus 520 e~a~~iL~iD~ii~~ 534 (535)
++|++||+||++|..
T Consensus 507 ~~a~~iL~id~ii~~ 521 (524)
T TIGR02348 507 SIAGLLLTTEAVVAD 521 (524)
T ss_pred HHHHHHHhHHHHhhc
Confidence 999999999999875
No 36
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-89 Score=681.65 Aligned_cols=515 Identities=34% Similarity=0.524 Sum_probs=488.3
Q ss_pred CCCCceEeeccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHH
Q 009431 11 PRSSKTESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELS 90 (535)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~ 90 (535)
++.+|..+..+...|+..+..|..|+..++++|++||||-|++||++|+.|++.+||||+|||+.|.++||++|++++.+
T Consensus 3 ~~~~~~~~~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvela 82 (545)
T KOG0360|consen 3 EAKKPLLCKGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELA 82 (545)
T ss_pred cccCCccccCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHH
Confidence 45677777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHc-cceeCCCCCHHHHHHHHHHHhcCc
Q 009431 91 KSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSK 169 (535)
Q Consensus 91 ~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~-~~~~~~~~~~~~l~~va~tsl~sk 169 (535)
+.|++++|||||++++++++|++++.+|+..++||..++.||+.|+..+++++.+ .+.|++...++.|.++++|+++||
T Consensus 83 q~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK 162 (545)
T KOG0360|consen 83 QLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSK 162 (545)
T ss_pred HhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcce
Confidence 9999999999999999999999999999999999999999999999999999976 788999888999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHhccCCC--CCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEe
Q 009431 170 VVSQYSTLLAPLAVDSVLSVVDPC--KPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQ 247 (535)
Q Consensus 170 ~~~~~~~~ls~li~~a~~~v~~~~--~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~ 247 (535)
++....++|++++++|+..+.-.. +...+.++.+.|.|.+|.+..||.+++|+.+ ++......||..+.|+||+++|
T Consensus 163 ~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaL-nc~~asq~m~~~i~~~Kiacld 241 (545)
T KOG0360|consen 163 IIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYAL-NCSVASQMMPLRIKNAKIACLD 241 (545)
T ss_pred ecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceee-eccHhhhccccccccceeeeEe
Confidence 999999999999999999876422 2235667899999999999999999999999 6766667799999999999999
Q ss_pred eecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCH
Q 009431 248 FQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVER 327 (535)
Q Consensus 248 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~ 327 (535)
+.|...+.++...+.+.++++++++.+.|....++.+++|...|+|||+++++| ||++++||.++|+++++|+.+
T Consensus 242 ~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gI-----ddmc~K~~veagamAVrR~~k 316 (545)
T KOG0360|consen 242 FTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGI-----DDMCLKYFVEAGAMAVRRCKK 316 (545)
T ss_pred cccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCc-----cHHHHHHHHHcchhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhCCeeeccccC------CCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHH
Q 009431 328 DEIEFITKTLNCLPIANIDH------FRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSL 401 (535)
Q Consensus 328 ~~L~~ia~~tGa~ii~~~~~------l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i 401 (535)
++|++|+++||+++++++.+ +.+..+|+|+.|.+.++|++.++.+.+.+. ..++|+|||+++..+||++|++
T Consensus 317 ~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka--~~aSiILrgaNd~~~DEmers~ 394 (545)
T KOG0360|consen 317 EDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA--TSASIILRGANDFMLDEMERSL 394 (545)
T ss_pred HHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc--ceeeEEEecCCcccHhhhccch
Confidence 99999999999999999874 456679999999999999999999999875 4999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 009431 402 HDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHA 481 (535)
Q Consensus 402 ~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~ 481 (535)
|||+++++..++++.+|||||++|.+|+-+|++++.+...+|++++..|+.||..||++|+-|++.|+.+++.+++..|+
T Consensus 395 hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs 474 (545)
T KOG0360|consen 395 HDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHS 474 (545)
T ss_pred hhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c--------CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhc
Q 009431 482 Q--------GEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 533 (535)
Q Consensus 482 ~--------~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 533 (535)
. ...++|+|+.+|++.|.++.|+++|..+|...|+.|+|.+..+||||++|.
T Consensus 475 ~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~ 534 (545)
T KOG0360|consen 475 VSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIK 534 (545)
T ss_pred hhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhh
Confidence 2 235899999999999999999999999999999999999999999999874
No 37
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=4.4e-87 Score=720.23 Aligned_cols=464 Identities=24% Similarity=0.338 Sum_probs=413.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHH----HHHHHHHhhcccc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAA----KMLVELSKSQDAA 96 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a----~ll~~~~~~~~~~ 96 (535)
+..+|.++++..++||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||++ +|+++++.+|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 456788999999999999999999999999999999999999999999999999999999998 5888899999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhh
Q 009431 97 AGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 97 ~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (535)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +.+.|.++|+++++ +++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d~~~L~~VA~ts~~------~~~ 155 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--DIQAITQVASISAG------NDE 155 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhcc------ChH
Confidence 9999999999999999999999999999999999999999999999999999987 78889999999887 578
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCC------CCceeeecceEEEEeeec
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQI 250 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~L 250 (535)
.|++++++|+..+++. +.|.+.. .++...++++++|++|++++.++. .|+..++||+|+++|++|
T Consensus 156 ~l~~lv~eAv~~vg~~--------g~i~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~l 226 (529)
T CHL00093 156 EVGSMIADAIEKVGRE--------GVISLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKI 226 (529)
T ss_pred HHHHHHHHHHHHhccC--------CceeecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCC
Confidence 9999999999999853 2344421 233456789999999987766542 244469999999999999
Q ss_pred CCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHh----cCceeccCC-
Q 009431 251 SPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAK----SKIMVVKDV- 325 (535)
Q Consensus 251 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~----~~I~~v~~v- 325 (535)
++.+ ..+.++++.+.+.+++|||++++|++++|+ ..++++ .+|+++++.
T Consensus 227 e~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~---~l~l~k~~g~~~i~avr~~~ 280 (529)
T CHL00093 227 TLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALA---TLVLNKLRGIVNVVAVRAPG 280 (529)
T ss_pred CchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHH---HHHHhhhcccceEEEEecCC
Confidence 9742 357889999999999999999999555443 344455 589999987
Q ss_pred ----CHHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEec---------ccC----------
Q 009431 326 ----ERDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITG---------IKD---------- 377 (535)
Q Consensus 326 ----~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~---------~~~---------- 377 (535)
++++|+|||.+|||++++ ++++++++++|+|+.|++.+ +++++|++ |+.
T Consensus 281 ~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 357 (529)
T CHL00093 281 FGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADS 357 (529)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCC
Confidence 458899999999999999 69999999999999999875 67888863 221
Q ss_pred --------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHh-hcCch
Q 009431 378 --------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAK-ALSGM 442 (535)
Q Consensus 378 --------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~-~~~~~ 442 (535)
+++.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++||.+|+++++ ..+++
T Consensus 358 ~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~~~~~~~~g~ 436 (529)
T CHL00093 358 SYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEE-GIVPGGGATLVHLSENLKTWAKNNLKED 436 (529)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc-CcccCCcHHHHHHHHHHHHHhccCCChH
Confidence 2358899999999999999999999999999999999 6999999999999999999886 78899
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHH
Q 009431 443 ERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECV 522 (535)
Q Consensus 443 ~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a 522 (535)
+++++++|++||+.||++|++|||+|+.+++.+++.. +.++|||..+|++.||++.|||||+.||.++|+.|+|+|
T Consensus 437 ~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a 512 (529)
T CHL00093 437 ELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIA 512 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999753 458999999999999999999999999999999999999
Q ss_pred HHHHchhhhhcCC
Q 009431 523 RMILKIDDIVTVR 535 (535)
Q Consensus 523 ~~iL~iD~ii~~~ 535 (535)
++|||||++|..+
T Consensus 513 ~~iL~id~ii~~~ 525 (529)
T CHL00093 513 SMILTTECIIVDK 525 (529)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998753
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=8.3e-86 Score=710.43 Aligned_cols=460 Identities=22% Similarity=0.332 Sum_probs=413.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhcccccc----ChHHHHHHHHHhhccc
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVL----QPAAKMLVELSKSQDA 95 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~----hP~a~ll~~~~~~~~~ 95 (535)
++..+|.+++..|++|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++ ||+++|+++++++|++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~ 83 (546)
T PRK14104 4 KEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSAD 83 (546)
T ss_pred ceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcc
Confidence 355689999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhh
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (535)
++||||||+++||++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.+.++++++.+++
T Consensus 84 e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~--~~~~l~~va~~s~~~d------ 155 (546)
T PRK14104 84 AAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVT--SNDEIAQVGTISANGD------ 155 (546)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHHHHhcCc------
Confidence 99999999999999999999999999999999999999999999999999999997 5567999999988854
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCc-ceeeeEeeEEEecCCCCCC------CCceeeecceEEEEee
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTV-DDTELVKGLVFDKKASHAA------GGPTRVENAKIAVIQF 248 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~-~dS~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~ 248 (535)
+++++++++|+..+++. +.|.+.. ++.. +++++++|++|++++.+++ .++.++++|+|++++.
T Consensus 156 ~~i~~lv~~Av~~vg~~--------g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~ 225 (546)
T PRK14104 156 AEIGKFLADAMKKVGNE--------GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEK 225 (546)
T ss_pred hHHHHHHHHHHHHhccC--------CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehh
Confidence 78999999999999853 3455553 3455 5899999999988765542 2477889999999984
Q ss_pred ecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHh------cCceec
Q 009431 249 QISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAK------SKIMVV 322 (535)
Q Consensus 249 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~------~~I~~v 322 (535)
.+.. + +++.++++.+.+.|+||||++++| ++.++++|.. .+|+++
T Consensus 226 ~i~~-------------~-----------~~i~~~l~~i~~~g~~lvI~~~~i-----~~~al~~l~~Nk~~~~~~i~av 276 (546)
T PRK14104 226 KLSS-------------L-----------NELLPLLEAVVQTGKPLVIVAEDV-----EGEALATLVVNRLRGGLKVAAV 276 (546)
T ss_pred hhcC-------------H-----------HHHHHHHHHHHHhCcCEEEECCCC-----cHHHHHHHHhCcccceeeEEEE
Confidence 4432 2 347889999999999999999999 7777787763 567777
Q ss_pred cCCC-----HHHHHHHHHHhCCeeecc-----ccCCCCCCceeeeEEEEEEecceEEEEEecccCC--------------
Q 009431 323 KDVE-----RDEIEFITKTLNCLPIAN-----IDHFRAEKLGHADLVEELSLGDGKIVKITGIKDM-------------- 378 (535)
Q Consensus 323 ~~v~-----~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-------------- 378 (535)
++.+ +++|+|||.+|||+++++ ++++++++||+|+.+++ ++++++++.++...
T Consensus 277 ~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~ 353 (546)
T PRK14104 277 KAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQI 353 (546)
T ss_pred eccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5554 899999999999999999 89999999999999885 67889999887651
Q ss_pred --------------------CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhh
Q 009431 379 --------------------GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438 (535)
Q Consensus 379 --------------------~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~ 438 (535)
++.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++..|+++. .
T Consensus 354 ~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~-g~VpGGGa~e~~~s~~L~~~~-~ 431 (546)
T PRK14104 354 EETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEE-GIVPGGGVALLRASEQLKGIK-T 431 (546)
T ss_pred HhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CcCcCchHHHHHHHHHHHHhh-c
Confidence 489999999999999999999999999999999999 699999999999999999874 3
Q ss_pred cCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 009431 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLA 518 (535)
Q Consensus 439 ~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A 518 (535)
.++++++++++|++||+.||++|++|||+|+.+++.+|+..| ..++|+|+.+|++.||++.|||||+.||.++|++|
T Consensus 432 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A 508 (546)
T PRK14104 432 KNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNA 508 (546)
T ss_pred CChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHH
Confidence 578999999999999999999999999999999999997653 45799999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhhcC
Q 009431 519 AECVRMILKIDDIVTV 534 (535)
Q Consensus 519 ~e~a~~iL~iD~ii~~ 534 (535)
+++|++||+||++|..
T Consensus 509 ~~~a~~iL~id~~I~~ 524 (546)
T PRK14104 509 ASVAALLITTEAMVAE 524 (546)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999864
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.9e-86 Score=719.00 Aligned_cols=468 Identities=23% Similarity=0.334 Sum_probs=414.6
Q ss_pred cccchH--HHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChH----HHHHHHHHhhcc
Q 009431 21 DNKRKE--DIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPA----AKMLVELSKSQD 94 (535)
Q Consensus 21 ~~~~~~--~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~ 94 (535)
+..+|. +++...+++|..|+++|++||||+||+|||+++.|+++|||||+||+|+|+++||+ ++|+++++++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 667788 79999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchh
Q 009431 95 AAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQY 174 (535)
Q Consensus 95 ~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~ 174 (535)
+++||||||++||+++||+++.++++.|+||..|++||+.|.+.++++|++++.|++ + +.|.++|++++++
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-~~L~~vA~tS~~~------ 208 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-SELADVAAVSAGN------ 208 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-HHHHHHHHHhccC------
Confidence 999999999999999999999999999999999999999999999999999999886 4 5799999999884
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCccee-eeEeeEEEecCCCCCC------CCceeeecceEEEEe
Q 009431 175 STLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDT-ELVKGLVFDKKASHAA------GGPTRVENAKIAVIQ 247 (535)
Q Consensus 175 ~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~ 247 (535)
++.|++|+++|+.++++. +.|.+. .|++.+|+ ++++|++|++++.+++ +|+++++||+|+++|
T Consensus 209 ~~~i~~liaeAv~~Vg~~--------g~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d 278 (600)
T PLN03167 209 NYEVGNMIAEAMSKVGRK--------GVVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVD 278 (600)
T ss_pred cHHHHHHHHHHHHHhccC--------CcEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEc
Confidence 579999999999999853 234443 68888987 9999999988866552 689999999999999
Q ss_pred eecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHH-hcCceeccCCC
Q 009431 248 FQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLA-KSKIMVVKDVE 326 (535)
Q Consensus 248 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~ 326 (535)
+.++. . +.+.++++.+.+.+++|||++++|++++|+.++.+.++ ..+|+++++.+
T Consensus 279 ~~i~~-------------~-----------~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~ 334 (600)
T PLN03167 279 KKITN-------------A-----------RDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPG 334 (600)
T ss_pred cccCC-------------H-----------HHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEccc
Confidence 86543 3 34566777888899999999999955555555544444 57899988875
Q ss_pred -----HHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEE-----ecc--------eEEEEEeccc-------
Q 009431 327 -----RDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELS-----LGD--------GKIVKITGIK------- 376 (535)
Q Consensus 327 -----~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~-----~g~--------~~~~~~~~~~------- 376 (535)
+++|+|||.+|||++++ ++++++++++|+|+.|++.+ +|+ +++.+|+++.
T Consensus 335 ~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~ 414 (600)
T PLN03167 335 FGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDY 414 (600)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHH
Confidence 89999999999999999 68889989999999999987 775 4788887653
Q ss_pred -----------CCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHH
Q 009431 377 -----------DMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERY 445 (535)
Q Consensus 377 -----------~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~ 445 (535)
.++..++|.|||+|+.+++|+||+++||++++|++++++ +|||||++|++++.+|++++...++++++
T Consensus 415 ~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 493 (600)
T PLN03167 415 EKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQK 493 (600)
T ss_pred HHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHH
Confidence 112344445999999999999999999999999999996 99999999999999999988777777775
Q ss_pred -HHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHH
Q 009431 446 -CVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRM 524 (535)
Q Consensus 446 -~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~ 524 (535)
++++|++||+.||++|++|||+|+.+++.+|++. ++.++|||..+|++.||++.|||||+.||+++|+.|+++|++
T Consensus 494 ~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~ 570 (600)
T PLN03167 494 VGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKT 570 (600)
T ss_pred HHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999753 356899999999999999999999999999999999999999
Q ss_pred HHchhhhhcCC
Q 009431 525 ILKIDDIVTVR 535 (535)
Q Consensus 525 iL~iD~ii~~~ 535 (535)
||+||++|+.+
T Consensus 571 iL~iD~iI~~~ 581 (600)
T PLN03167 571 FLTSDCVVVEI 581 (600)
T ss_pred HHHHHHHhhcC
Confidence 99999999753
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-82 Score=624.78 Aligned_cols=500 Identities=29% Similarity=0.467 Sum_probs=478.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+...+...|++++..+.+++++.+||+|..||++++.|++.+|+||.+.+++|+++||.+-++..++..||+.+|||
T Consensus 11 Ev~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDG 90 (520)
T KOG0359|consen 11 EVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDG 90 (520)
T ss_pred HHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCC
Confidence 45566777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
||++|+|+++|+++|...+..|+||..|++||+.|.+.++++|++.+.++ +++.|..+++|++++|....-.+.+++
T Consensus 91 ttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt~ 167 (520)
T KOG0359|consen 91 TTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV---DRETLKDVARTSLRTKVHAELADVLTP 167 (520)
T ss_pred cceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccch---hHHHHHHHHHHhhcCcccHHHHhHhHH
Confidence 99999999999999999999999999999999999999999999777666 578999999999999999888899999
Q ss_pred HHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccce
Q 009431 181 LAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQS 260 (535)
Q Consensus 181 li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~ 260 (535)
++++|+..+.+.. ..+|+.++.++++...+..|+.+++|+++|++ ..|+.||+.++|+.|+++|.+|||+|+++++.
T Consensus 168 ~vv~aVl~i~~~~--~~idl~mveim~mq~~s~~dT~~v~glvLdhg-~rHpdmp~~~e~a~iL~~NvSLEYEK~Einsg 244 (520)
T KOG0359|consen 168 IVVDSVLCIRRQE--EPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHG-ARHPDMPRRVEDAYILICNVSLEYEKPEINSG 244 (520)
T ss_pred HHHhhheeeccCC--CCcchhHHHhhhhccCchhhhHHhhhhhccCC-CCCcccccchhceEEEEeeccccccccccccc
Confidence 9999999988433 36899999999999999999999999999887 66999999999999999999999999999999
Q ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCc----EEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHH
Q 009431 261 IVVSDYTQMDRILKEERNYILGMIKKIKATGCN----VLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKT 336 (535)
Q Consensus 261 i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~----lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~ 336 (535)
+-+++.+|.+.+...|++++.+.+.+|++++.. +||.+++| +|..++.|+++||++++|.++..|||+..+
T Consensus 245 ffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGi-----dp~sld~~a~~gIlaLRRAKRRNmERL~la 319 (520)
T KOG0359|consen 245 FFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGI-----DPTSLDSLAKSGILALRRAKRRNMERLVLA 319 (520)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCC-----CCCcchhhhhcchHHHHHHhhhhHHHHHHh
Confidence 999999999999999999999999999988854 78899999 999999999999999999999999999999
Q ss_pred hCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009431 337 LNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRF 416 (535)
Q Consensus 337 tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 416 (535)
||+..+.+++|++|+.+|+|+.|++.++|+++|+|+++|++ ++.|||+++||+++.+.+.+++++|++++++++++++.
T Consensus 320 cGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~-p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~ 398 (520)
T KOG0359|consen 320 CGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN-PSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKC 398 (520)
T ss_pred hccceecccccCChhhccccceeEEeeccceeeEeeecCCC-CcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcc
Q 009431 417 LIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQI 496 (535)
Q Consensus 417 vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~ 496 (535)
++||+|++|..++.+|+...++.+++.++++++|++||..+|++|++|+|+|+.+.+.+|...|..+ ..|+|+.+|+.
T Consensus 399 ~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~ 476 (520)
T KOG0359|consen 399 GIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEE 476 (520)
T ss_pred cccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCc
Confidence 9999999999999999988888999999999999999999999999999999999999999988765 45999999999
Q ss_pred cccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 497 TNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 497 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
.+....||||.+.||.+.|.+++-+|+.||-+|+|+++
T Consensus 477 ~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 477 CDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred cchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999976
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-67 Score=503.68 Aligned_cols=379 Identities=40% Similarity=0.613 Sum_probs=357.9
Q ss_pred CCceEeec-----cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHH
Q 009431 13 SSKTESYV-----DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLV 87 (535)
Q Consensus 13 ~~~~~~~~-----~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~ 87 (535)
-.|+.+++ ++..|.++.+.++.+..++++++++|+||+|++|+++.+.|++++|||| .|++++++.
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv 79 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIV 79 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHH
Confidence 35777775 6679999999999999999999999999999999999999999999999 689999999
Q ss_pred HHHhhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhc
Q 009431 88 ELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLN 167 (535)
Q Consensus 88 ~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~ 167 (535)
..++.|+.++|||||.+++|++.+++++.+++.+|+||..|.+||..+...+++.|++.+-+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999999988877665432211
Q ss_pred CcccchhhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEe
Q 009431 168 SKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQ 247 (535)
Q Consensus 168 sk~~~~~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~ 247 (535)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCH
Q 009431 248 FQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVER 327 (535)
Q Consensus 248 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~ 327 (535)
+..+++++++.|+++++|+|++ +|.+.|+|-+++.|+++||.-
T Consensus 144 --------------------------------f~emi~~vK~~ga~l~icqwgf-----ddeanhll~~n~lpavrwVGG 186 (400)
T KOG0357|consen 144 --------------------------------FEEMIQQIKETGANLAICQWGF-----DDEANHLLLQNNLPAVRWVGG 186 (400)
T ss_pred --------------------------------HHHHHHHHHhhCCcEEEEeccc-----CchhhhHHhhcCCCceeecCC
Confidence 2456888999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEec--ceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 009431 328 DEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLG--DGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDAL 405 (535)
Q Consensus 328 ~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g--~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal 405 (535)
.++|.||.+||++|+++|++++++.||+|+.|++..+| .+++..+++|++ ++.+||.+||++..+++|.+|++||||
T Consensus 187 pEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~n-skaVTifvRg~Nkmii~Eakrslhdal 265 (400)
T KOG0357|consen 187 PEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKN-SKAVTIFVRGGNKMIIEEAKRSLHDAL 265 (400)
T ss_pred cceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCC-CceEEEEEecCcceeHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999998 689999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHh-hcCC
Q 009431 406 CVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRH-AQGE 484 (535)
Q Consensus 406 ~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h-~~~~ 484 (535)
|++|+++++.++|+|||++|+.||-.+.+.+..+++.+||++++|++||++||-.|++|+|++|++.++++++.+ ..+.
T Consensus 266 Cvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~ 345 (400)
T KOG0357|consen 266 CVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMN 345 (400)
T ss_pred HHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877 4567
Q ss_pred CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 485 INSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 485 ~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
+++|+|+.-..-.||.+.+++||+..|++.+..|++++.|||+||+|+.+
T Consensus 346 ~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~ 395 (400)
T KOG0357|consen 346 PALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKP 395 (400)
T ss_pred cccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecC
Confidence 89999998878899999999999999999999999999999999999865
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-60 Score=480.54 Aligned_cols=463 Identities=25% Similarity=0.332 Sum_probs=414.4
Q ss_pred eccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChH----HHHHHHHHhhcc
Q 009431 19 YVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPA----AKMLVELSKSQD 94 (535)
Q Consensus 19 ~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~ 94 (535)
-++..||.+++...++++..|+++|..|+||+||+++|.+..|.|.|||||.|+.+++.+.++. |+++++.+.+.+
T Consensus 16 ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN 95 (550)
T KOG0356|consen 16 AKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTN 95 (550)
T ss_pred ccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhcc
Confidence 3599999999999999999999999999999999999999999999999999999999998885 899999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchh
Q 009431 95 AAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQY 174 (535)
Q Consensus 95 ~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~ 174 (535)
+..||||||+++|++++..++.+-+.+|.+|..+.+|+..+.+...+.|+++++|++ ..+++.++|..|.++
T Consensus 96 ~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vt--t~eeIaqVAtiSAng------ 167 (550)
T KOG0356|consen 96 EEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVT--TPEEIAQVATISANG------ 167 (550)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhhhcCC------
Confidence 999999999999999999999999999999999999999999999999999999998 789999999988885
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcce-eeeEeeEEEecCCCCCCC------CceeeecceEEEEe
Q 009431 175 STLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDD-TELVKGLVFDKKASHAAG------GPTRVENAKIAVIQ 247 (535)
Q Consensus 175 ~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~d-S~li~Giv~~~~~~~~~~------~~~~~~n~~Ill~~ 247 (535)
+.++++++.+|+.++++. +.|.|+ .|.+..| -++++||-||++|++++. +..++++|++++.+
T Consensus 168 D~~ig~li~~a~~kvG~~--------GVItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~ 237 (550)
T KOG0356|consen 168 DKEIGNLISDAMKKVGRK--------GVITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSE 237 (550)
T ss_pred cHHHHHHHHHHHHHhCcC--------CeEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhh
Confidence 688999999999999964 567775 6887775 599999999999998754 44567888887765
Q ss_pred eecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHh------cCcee
Q 009431 248 FQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAK------SKIMV 321 (535)
Q Consensus 248 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~------~~I~~ 321 (535)
-.++. . +.|.+.++...+...||++++.+|++|+|..++++.++- .+++.
T Consensus 238 kki~~-------------v-----------~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapg 293 (550)
T KOG0356|consen 238 KKISS-------------V-----------QSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPG 293 (550)
T ss_pred hhhhH-------------H-----------HHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCC
Confidence 44432 1 567899999889999999999999999999999999873 45688
Q ss_pred ccCCCHHHHHHHHHHhCCeeecc------ccCCCCCCceeeeEEEEEEecceEEEEEecc--------------------
Q 009431 322 VKDVERDEIEFITKTLNCLPIAN------IDHFRAEKLGHADLVEELSLGDGKIVKITGI-------------------- 375 (535)
Q Consensus 322 v~~v~~~~L~~ia~~tGa~ii~~------~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~-------------------- 375 (535)
|++-++..+.+++.+||+.++.. +++..++++|+|..+.+... .-..+.+-
T Consensus 294 fGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd---~t~ll~g~~~~~~v~~rIeqik~~~e~t 370 (550)
T KOG0356|consen 294 FGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKD---DTMLLKGKGNKAQVEGRIEQIKEMIEET 370 (550)
T ss_pred CcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecC---cceeeCCCCCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999974 56677889999999988752 11111110
Q ss_pred --------------cCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCc
Q 009431 376 --------------KDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSG 441 (535)
Q Consensus 376 --------------~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~ 441 (535)
+.++++++|.++|.|+.+++|++.+++|||+++++++++ |+|||||++.++|+..|.+.....+.
T Consensus 371 ~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aavee-GivpGGG~all~~~~~l~~lk~~~~~ 449 (550)
T KOG0356|consen 371 TSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEE-GIVPGGGTALLRAIPVLDELKATNNF 449 (550)
T ss_pred hhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhc-CcccCCchHHHHhhhhhhhcccccch
Confidence 125899999999999999999999999999999999998 99999999999999999987664456
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHH
Q 009431 442 MERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAEC 521 (535)
Q Consensus 442 ~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~ 521 (535)
.++.+++++.+||..|..+++.|||.|+..++.+++. + .+|||..++++.||++.||+||+.|...+|..|..+
T Consensus 450 ~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~----~--~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~v 523 (550)
T KOG0356|consen 450 DQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN----D--DYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGV 523 (550)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh----h--hhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHH
Confidence 7788899999999999999999999999999999983 2 799999999999999999999999999999999999
Q ss_pred HHHHHchhhhhc
Q 009431 522 VRMILKIDDIVT 533 (535)
Q Consensus 522 a~~iL~iD~ii~ 533 (535)
|+++++++.+|.
T Consensus 524 asll~tte~vvt 535 (550)
T KOG0356|consen 524 ASLLTTTEAVVT 535 (550)
T ss_pred HHHHhhheeEEE
Confidence 999999998764
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=3.2e-39 Score=318.22 Aligned_cols=234 Identities=21% Similarity=0.349 Sum_probs=213.5
Q ss_pred cchhhhhHHHHHHHHHHhccCCC-CCCCcccc-cEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEee
Q 009431 171 VSQYSTLLAPLAVDSVLSVVDPC-KPDLVDLR-DIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQF 248 (535)
Q Consensus 171 ~~~~~~~ls~li~~a~~~v~~~~-~~~~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~ 248 (535)
.+.|.++|++++++|+..+.+.. ..+.+|++ +|+|++++||++.||++++|+++ ++.+.+..||+.++||||++++|
T Consensus 16 ~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi-~k~~~~~~m~~~i~n~kIlll~~ 94 (261)
T cd03334 16 DESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVF-TKNVAHKRMPSKIKNPRILLLQG 94 (261)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEE-eCCCCCccCCcccCCCcEEEEee
Confidence 34578999999999999997432 12367874 69999999999999999999999 55688889999999999999999
Q ss_pred ecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHH
Q 009431 249 QISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERD 328 (535)
Q Consensus 249 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~ 328 (535)
+|++++++. ++.+++++++.|++++.+++++|.+.|++|||++++| ++++++||.++||+++++++++
T Consensus 95 ~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I-----~~~a~~~l~k~gI~~v~~v~~~ 162 (261)
T cd03334 95 PLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSV-----SRIAQDLLLEAGITLVLNVKPS 162 (261)
T ss_pred eeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCcc-----CHHHHHHHHHCCCEEEEecCHH
Confidence 999998763 5688999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhCCeeeccc-cCCCCCCceeeeEEEEEEecc-----eEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHH
Q 009431 329 EIEFITKTLNCLPIANI-DHFRAEKLGHADLVEELSLGD-----GKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLH 402 (535)
Q Consensus 329 ~L~~ia~~tGa~ii~~~-~~l~~~~lG~~~~v~~~~~g~-----~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~ 402 (535)
+|+|||++|||++++++ ++++++.+|+|+.|++.++|+ ++|++|++|+. ++.+||+|||+|++.++|.||+++
T Consensus 163 dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~-~~~~TIlLRG~t~~~lde~eR~i~ 241 (261)
T cd03334 163 VLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPK-ELGCTILLRGGDLEELKKVKRVVE 241 (261)
T ss_pred HHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCC-CceeEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999994 589999999999999999986 69999999987 889999999999999999999999
Q ss_pred HHHHHHHHHHhcCccc
Q 009431 403 DALCVVRCLVSKRFLI 418 (535)
Q Consensus 403 dal~~~~~~~~~~~vv 418 (535)
||+++++++..+..++
T Consensus 242 Dal~v~~~~~le~~~~ 257 (261)
T cd03334 242 FMVFAAYHLKLETSFL 257 (261)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 9999999998874443
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.7e-35 Score=283.97 Aligned_cols=208 Identities=42% Similarity=0.681 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhcCcccchhhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCc
Q 009431 156 DSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGP 235 (535)
Q Consensus 156 ~~l~~va~tsl~sk~~~~~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~ 235 (535)
+.|.++|+|+++||+ ++|.+.|++++++|+..+++..+ .++.++|+|++++||++.||++++|++|++ .+.++.||
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~--~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~-~~~~~~m~ 77 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR--MDDLGVIKVEKIPGGSLEDSELVVGVVFDK-GYASPYMP 77 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC--CCchHHEEEEEecCcChhhceeEeeEEEec-cccCCCCC
Confidence 468999999999999 99999999999999999986432 466789999999999999999999999955 47788999
Q ss_pred eeeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHH
Q 009431 236 TRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLA 315 (535)
Q Consensus 236 ~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~ 315 (535)
+.++||+|++++++|++ ||+++++| ++.++++|.
T Consensus 78 ~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I-----~~~al~~l~ 111 (209)
T cd03333 78 KRLENAKILLLDCPLEY-----------------------------------------VVIAEKGI-----DDLALHYLA 111 (209)
T ss_pred eEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcc-----cHHHHHHHH
Confidence 99999999999999986 99999999 999999999
Q ss_pred hcCceeccCCCHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHH
Q 009431 316 KSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLD 395 (535)
Q Consensus 316 ~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~ 395 (535)
++||++++++++++|+|||++|||++++++++++++.+|+|++|++.++|++++++|++++. ++.+||+|||+|+.+++
T Consensus 112 ~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~-~~~~tIllrG~t~~~l~ 190 (209)
T cd03333 112 KAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG-GKAATILLRGATEVELD 190 (209)
T ss_pred HCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCC-CCEEEEEEECCCHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 009431 396 EAERSLHDALCVVRCLVSK 414 (535)
Q Consensus 396 e~~~~i~dal~~~~~~~~~ 414 (535)
|.||+++||++++++++++
T Consensus 191 e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 191 EVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-20 Score=211.36 Aligned_cols=239 Identities=19% Similarity=0.312 Sum_probs=211.5
Q ss_pred hhhhhHHHHHHHHHHhccCCCC-CCCccc-ccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeec
Q 009431 173 QYSTLLAPLAVDSVLSVVDPCK-PDLVDL-RDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQI 250 (535)
Q Consensus 173 ~~~~~ls~li~~a~~~v~~~~~-~~~~~~-~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L 250 (535)
.|.+.+..++++|...+.+... ++..|+ ++++|.++.||...||+++.|+++ .+.+.+..|..++++|+|+++.++|
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~-sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVC-SKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEe-ecchhhhhhhhhccCCceEEEecch
Confidence 5788899999999999987643 334565 999999999999999999999999 7778888999999999999999999
Q ss_pred CCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHH
Q 009431 251 SPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEI 330 (535)
Q Consensus 251 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L 330 (535)
++.+...+ ...++.++++|.++++.++.+|...+++++++.++| +.+++++|...+|..+-+++..-|
T Consensus 411 eyqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksV-----S~~aqe~L~~k~I~lvlnvK~s~l 478 (1598)
T KOG0230|consen 411 EYQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSV-----SRIAQELLLDKGISLVLNVKRSLL 478 (1598)
T ss_pred hhhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechH-----HHHHHHHhhccCeEEEEeccHHHH
Confidence 99864331 223566677789999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhCCeeeccccCCCCCCceeeeEEEEEEec-----ceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 009431 331 EFITKTLNCLPIANIDHFRAEKLGHADLVEELSLG-----DGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDAL 405 (535)
Q Consensus 331 ~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g-----~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal 405 (535)
+||+++|||.|+++++.++...+|+|+.+++.+.- .+.+++|++|.. ...|||+|||....++.+.++.++-+.
T Consensus 479 eRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~-~lG~TiLLrG~~~~eLkkVK~Vvq~~v 557 (1598)
T KOG0230|consen 479 ERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPK-PLGCTILLRGDSLEELKKVKHVVQYLV 557 (1598)
T ss_pred HHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCC-CCCceEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988764 457889999988 899999999999999999999999999
Q ss_pred HHHHHHHhcCcccccCChhH
Q 009431 406 CVVRCLVSKRFLIAGGGAPE 425 (535)
Q Consensus 406 ~~~~~~~~~~~vvpGGG~~E 425 (535)
.++.+..-+..++.--|+.-
T Consensus 558 ~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 558 FAAYHLALETSFLADEGASI 577 (1598)
T ss_pred HHHHHHHHhhhhhhccCCcc
Confidence 99988766656666666544
No 46
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=69.96 E-value=7.6 Score=31.74 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 280 ILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 280 i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
+.+..+.+.+..+.+||.+.+++++.+......++.+++|+++...++ +.|.+++|-.
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~---~eLG~~~g~~ 77 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSK---EELGRACGKK 77 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHH---HHHHHHTTSS
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCH---HHHHHHHCCC
Confidence 345567777778899999999988777777777888999999877654 5566666654
No 47
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=61.07 E-value=25 Score=28.30 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHH
Q 009431 280 ILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFIT 334 (535)
Q Consensus 280 i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia 334 (535)
+++-++.+.+-.+.+|++++++++..+ .-....+.+.||+.+---++.+|-+.|
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv-~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLM-TRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHH-HHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 455677777778899999999976644 344567888999999877766665544
No 48
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=60.10 E-value=24 Score=30.30 Aligned_cols=55 Identities=7% Similarity=0.035 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
+.++.+.+..+.+||++.++++.-+-....+++.+.+|+.+..-+++ +|..++|-
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~---eLG~a~Gk 87 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKE---DLGAAAGL 87 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 44566666678899999999443222334556778899977766654 45555653
No 49
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=58.40 E-value=27 Score=27.92 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
++.++.|.+-++.+||++.+.++. +-....++++.++|+++.--++ +.|..++|-.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~ 72 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPR-LTEKVEALANEKGVPVSKVDSM---KKLGKACGIE 72 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCC
Confidence 344566777778999999999553 4444556778899999876655 5566666653
No 50
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=58.19 E-value=26 Score=30.36 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
.+.++.+.+..+.+||++.++++..+-.....++.+++|+.+..-++ ++|..++|-.
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk---~eLG~a~Gk~ 92 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK---KDLGKAAGLE 92 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHhCCC
Confidence 34456666667889999999944322223445677889997666655 4556666643
No 51
>PRK07714 hypothetical protein; Provisional
Probab=53.66 E-value=37 Score=28.16 Aligned_cols=55 Identities=7% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
+..+.+.+-.+.+||.+.+.+++...+ ..+++..++|+++...++ +.|..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~k-i~~~~~~~~vp~~~~~sk---~eLG~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKK-ITDKCTYYNVPMRKVENR---QQLGHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHH-HHHHHHhcCCCEEEeCCH---HHHHHHhCCC
Confidence 345666667789999999995553332 344567789999877666 5566667743
No 52
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=52.67 E-value=30 Score=27.80 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=32.5
Q ss_pred HHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHH
Q 009431 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIE 331 (535)
Q Consensus 283 ~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~ 331 (535)
..+.+...++++||+ +.| .+-+.+.|.+.||-++.. ...+++
T Consensus 45 ~~~~l~~~~v~~li~-~~i-----G~~~~~~L~~~gI~v~~~-~~~~i~ 86 (94)
T PF02579_consen 45 IAKFLAEEGVDVLIC-GGI-----GEGAFRALKEAGIKVYQG-AGGDIE 86 (94)
T ss_dssp HHHHHHHTTESEEEE-SCS-----CHHHHHHHHHTTSEEEES-TSSBHH
T ss_pred HHHHHHHcCCCEEEE-eCC-----CHHHHHHHHHCCCEEEEc-CCCCHH
Confidence 345555689999988 678 999999999999999886 433333
No 53
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=51.79 E-value=42 Score=26.90 Aligned_cols=55 Identities=15% Similarity=0.017 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
..++.+.+-++.+||++.+.++ -+-.-..+++..++|++....+ .+.|..++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~-~~~k~i~~~c~~~~Vpv~~~~t---~~eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEE-HVTKKIKELCEEKSIKIVYIDT---MKELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHhCCCCEEEeCC---HHHHHHHHCCc
Confidence 3456677778899999999943 2223334566779999975554 45666777754
No 54
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=51.45 E-value=38 Score=29.07 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHH
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITK 335 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~ 335 (535)
....+.+.+-.+.+|+.+.+++++-+-.....+|+++||+.+---++.+|-+.+-
T Consensus 33 ~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g 87 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAVG 87 (116)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhC
Confidence 4445566666689999999997665556666788889999998888776655443
No 55
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=49.72 E-value=33 Score=28.05 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=33.5
Q ss_pred HHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHH
Q 009431 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEF 332 (535)
Q Consensus 283 ~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ 332 (535)
..+.|...++++|++ +++ .+-+.+.|.+.||.++...+ ..++.
T Consensus 55 ~~~~l~~~~v~~vi~-~~i-----G~~~~~~l~~~gI~v~~~~~-~~i~~ 97 (103)
T cd00851 55 AAEFLADEGVDVVIV-GGI-----GPRALNKLRNAGIKVYKGAE-GTVEE 97 (103)
T ss_pred HHHHHHHcCCCEEEe-CCC-----CcCHHHHHHHCCCEEEEcCC-CCHHH
Confidence 455566689999999 578 99999999999999886665 34443
No 56
>PRK06683 hypothetical protein; Provisional
Probab=47.83 E-value=49 Score=26.44 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCee
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLP 341 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~i 341 (535)
+.++.+.+-++.+||++.+.++. +-.-..+++..++|+++..-++ +.|..++|-.+
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~-~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~~ 73 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMR-LTHVIIRTALQHNIPITKVESV---RKLGKVAGIQV 73 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCcc
Confidence 34566667778999999999333 1122334567799999776654 56677777543
No 57
>PRK07283 hypothetical protein; Provisional
Probab=45.65 E-value=68 Score=26.51 Aligned_cols=50 Identities=6% Similarity=0.008 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHH----HHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSL----HYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~----~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
+..+.+.+-.+.+||.+.+. ++-.. +.+..++|+++...++ +.|..++|=
T Consensus 25 ~v~~aik~gk~~lVi~A~Da-----s~~~~kk~~~~~~~~~Vp~~~~~t~---~eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDA-----GPNLTKKVTDKSNYYQVEVSTVFST---LELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 34566666778999999999 66555 4566679999877665 456777773
No 58
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=42.74 E-value=78 Score=27.42 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
...+.|.+.|+++||+ ..+ .+-+.+.|+..||-++.-.+.+-=+-|-....+
T Consensus 56 ~~a~~l~~~gvdvvi~-~~i-----G~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIA-SNI-----GPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEE-Ccc-----CHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 3578889999999999 577 999999999999988866663333334443333
No 59
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=41.01 E-value=73 Score=26.39 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCC-CHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDV-ERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v-~~~~L~~ia~~tGa 339 (535)
..++.+.+.++.+||++.+.++ ..-.-..+++..++|+++... ++ +.|.+++|-
T Consensus 23 ~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~~~tk---~eLG~a~Gk 77 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEYEGSS---VELGTLCGK 77 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCCH---HHHHHHhCC
Confidence 3466777778899999999833 333445567788999987763 55 456677774
No 60
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=36.51 E-value=35 Score=29.65 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceecc
Q 009431 278 NYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVK 323 (535)
Q Consensus 278 ~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~ 323 (535)
+.-++.++++...++++||++.+. ..++...+.++++++++++
T Consensus 68 ~~r~~~l~~l~~~~~P~iIvt~~~---~~p~~l~e~a~~~~ipll~ 110 (127)
T PF02603_consen 68 EERKERLEKLFSYNPPCIIVTRGL---EPPPELIELAEKYNIPLLR 110 (127)
T ss_dssp HHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHhCCcEEE
Confidence 455677899999999999999998 3367788889999999885
No 61
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=34.74 E-value=95 Score=26.03 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHH----HHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSL----HYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~----~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
...+.+.+-++.+||.+.+. ++-.. +++..++|+++....++ .|..++|=.
T Consensus 24 ~v~~aik~gk~~lVI~A~D~-----s~~~kkki~~~~~~~~vp~~~~~t~~---eLg~a~Gk~ 78 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDI-----SENSKNKFKNYCNKYNIPYIEGYSKE---ELGNAIGRD 78 (104)
T ss_pred HHHHHHHcCCceEEEEeCCC-----CHhHHHHHHHHHHHcCCCEEEecCHH---HHHHHhCCC
Confidence 34566666778999999999 55443 34456799988876664 466677754
No 62
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=33.83 E-value=89 Score=25.30 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=31.0
Q ss_pred HHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCC
Q 009431 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVE 326 (535)
Q Consensus 283 ~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~ 326 (535)
..+.+...++++|++. ++ .+-+.+.|.+.||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~i-----G~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GI-----GGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-cc-----CccHHHHHHHcCCEEEEcCC
Confidence 3455667899999995 68 99999999999999886655
No 63
>smart00574 POX domain associated with HOX domains.
Probab=31.08 E-value=1.6e+02 Score=26.03 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHh
Q 009431 392 LVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAK 437 (535)
Q Consensus 392 ~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~ 437 (535)
..++|++++.+....-++.+...=..|+|.|++-...+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4567777776666555555544434578999988888887776554
No 64
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=30.89 E-value=1.3e+02 Score=25.37 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHH----HHHHHhcCceeccC-CCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLS----LHYLAKSKIMVVKD-VERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~----~~~l~~~~I~~v~~-v~~~~L~~ia~~tGa 339 (535)
+.++.+.+.++.+||++.+. ++.. .+++..++|+++.. -.+ +.|..++|-
T Consensus 32 ~vlkalk~gkaklViiA~D~-----~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk 86 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNC-----PPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGR 86 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCC-----CHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCC
Confidence 44566777778999999999 6554 45667789998764 444 566677774
No 65
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=26.78 E-value=1.8e+02 Score=25.88 Aligned_cols=46 Identities=26% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHh
Q 009431 392 LVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAK 437 (535)
Q Consensus 392 ~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~ 437 (535)
..++|++++.+....-++.+...=-.|.|.|++-.+.+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSr 129 (140)
T PF07526_consen 84 SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 4566666666555544444433323478999998888888877654
No 66
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=24.71 E-value=1.6e+02 Score=27.58 Aligned_cols=33 Identities=6% Similarity=0.121 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHh
Q 009431 279 YILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAK 316 (535)
Q Consensus 279 ~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~ 316 (535)
.+++.++.+...++++++++.+. ++.+.-+|.+
T Consensus 77 ~fKef~e~ike~di~fiVvSsGm-----~~fI~~lfe~ 109 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIVVSSGM-----DPFIYPLFEG 109 (220)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCC-----chHHHHHHHh
Confidence 58899999999999999999999 8887776654
No 67
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.65 E-value=2.1e+02 Score=29.32 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCeee
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPI 342 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii 342 (535)
..+++.+.+.++++|++..+. +.. ...+++.||.++..+..-.+-+-+...|+..+
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~-----P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGR-----PDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCC-----hHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 346788888999999998876 554 48888999999988887666666777777655
No 68
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=23.17 E-value=1.7e+02 Score=28.83 Aligned_cols=55 Identities=5% Similarity=0.010 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 338 (535)
......|.+..+.|||++.++++-.+-...-.+|.+++|+.+-.-++++ |..+.|
T Consensus 138 n~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~e---LG~AIG 192 (266)
T PTZ00365 138 NHVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSR---LGKLVH 192 (266)
T ss_pred HHHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHH---HHHHhC
Confidence 3444555566678999999994433333333567778888877666654 444444
No 69
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.97 E-value=1.6e+02 Score=26.77 Aligned_cols=51 Identities=27% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceecc--CCC-----HHHHHHHHHHhCC
Q 009431 284 IKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVK--DVE-----RDEIEFITKTLNC 339 (535)
Q Consensus 284 l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~--~v~-----~~~L~~ia~~tGa 339 (535)
++.|.+.+++|||..... ..-....|.+.|++++- ... .+.++.++.++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~-----~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSS-----LAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCc-----CHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 677888899999987655 44356788889986542 211 2356677777774
No 70
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=22.89 E-value=2.4e+02 Score=23.95 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCC----HHHHHHHHHHhCC
Q 009431 280 ILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVE----RDEIEFITKTLNC 339 (535)
Q Consensus 280 i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~----~~~L~~ia~~tGa 339 (535)
+...++.+ .+|++||| .+| .+-+...|.+.||.++.--. .+-|+.+..+.-.
T Consensus 54 ~~~~~~~l--~~c~vvi~-~~I-----G~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~ 109 (119)
T TIGR02663 54 IAPKIEAL--KDCAILYC-LAI-----GGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKG 109 (119)
T ss_pred HHHHHHHh--CCCcEEEE-hhc-----CccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcC
Confidence 34445555 58999988 688 99999999999998886332 5667777776643
No 71
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=22.73 E-value=3.6e+02 Score=28.10 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCc
Q 009431 265 DYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSI 301 (535)
Q Consensus 265 ~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I 301 (535)
+++++++|. +.+++++++.+++.|..+++...+-
T Consensus 245 sp~~f~ef~---~P~~k~i~~~i~~~g~~~ilh~cG~ 278 (378)
T cd03308 245 RPKQFEKFY---WPSFKKVVEGLAARGQRIFLFFEGD 278 (378)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 455666554 5678888999887776655544443
No 72
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=22.68 E-value=1.7e+02 Score=24.20 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCC
Q 009431 280 ILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVE 326 (535)
Q Consensus 280 i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~ 326 (535)
+.+.++.+ .+|++||+ ++| .+-+...|.++||-++.--.
T Consensus 56 ~~~~l~~l--~~~~vvi~-~~i-----G~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 56 LDAIIKLL--SDCDAVLC-AKI-----GDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred HHHHHHHH--cCCcEEee-hhh-----CccHHHHHHHCCCEEEEecC
Confidence 34444444 58999988 788 99999999999999885443
No 73
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.52 E-value=2.2e+02 Score=22.03 Aligned_cols=45 Identities=11% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceecc
Q 009431 278 NYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVK 323 (535)
Q Consensus 278 ~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~ 323 (535)
+.+...|+++.+...+++|+.++- +...+.++.++..++|+..+.
T Consensus 18 ~~i~~~Ld~~~~~~~~~~lvhGga-~~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 18 ELIWAALDKVHARHPDMVLVHGGA-PKGADRIAARWARERGVPVIR 62 (71)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCC-CCCHHHHHHHHHHHCCCeeEE
Confidence 457788888888888888887765 233389999999999987764
No 74
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=21.95 E-value=91 Score=30.38 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHH
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERD 328 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~ 328 (535)
+++.+..+.|+++|++...- .+++.++.++.||..++..+..
T Consensus 183 emv~Ka~~aGIpvlvS~sap-----T~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAP-----TDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHHcCCCEEEEcccc-----hHHHHHHHHHhCCEEEEEecCC
Confidence 45777788888888888888 8888888888888877766543
No 75
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=21.83 E-value=1.8e+02 Score=30.17 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=37.2
Q ss_pred HHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCC---C----HHHHHHHHHHhCCe
Q 009431 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDV---E----RDEIEFITKTLNCL 340 (535)
Q Consensus 283 ~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v---~----~~~L~~ia~~tGa~ 340 (535)
-+|.|..++++|||..... ..-..+.|.+.||+++... + .+.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~-----~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAV-----AGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCC-----chHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 3788889999999986544 4446788888999876432 2 24556777777753
No 76
>PF12846 AAA_10: AAA-like domain
Probab=21.51 E-value=2e+02 Score=28.18 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCccccccchHH-----HHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 278 NYILGMIKKIKATGCNVLLIQKSILRDAVTDLS-----LHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 278 ~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~-----~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
+.+..++....+.|+.+++..+.+ +++. ...+...+...+.+....+.+.+++..|-+
T Consensus 240 ~~~~~~~~~~Rk~g~~~~l~tQ~~-----~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 240 EFLDELLREGRKYGVGLILATQSP-----SDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhhHHHHHHHhcCCEEEEeeCCH-----HHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 457778888889999999999999 8888 778888899999999999888899988854
No 77
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=21.16 E-value=3.4e+02 Score=27.60 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCcEEEEcCCccccccchHHHHHHHhcCcee
Q 009431 265 DYTQMDRILKEERNYILGMIKKIKAT--GCNVLLIQKSILRDAVTDLSLHYLAKSKIMV 321 (535)
Q Consensus 265 ~~~~~~~~~~~E~~~i~~~l~~i~~~--~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 321 (535)
+++++++|. ..+++++++.++.. +++++...++. . -.+.++.+.++-+
T Consensus 205 sp~~f~ef~---~P~~k~i~~~i~~~~~~~~ilh~cg~~-----~-~~~~~~~~~~~~~ 254 (335)
T cd00717 205 SPEDFEEFV---LPYLKRIIEEVKKRLPGVPVILFAKGA-----G-GLLEDLAQLGADV 254 (335)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHhCCCCCEEEEcCCC-----H-HHHHHHHhcCCCE
Confidence 445565554 56778888888887 56777666766 4 3345555544444
No 78
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.06 E-value=2e+02 Score=26.24 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=33.7
Q ss_pred HHHHHhcCCcEEEEcCCccccccchH-HHHHHHhcCceeccCC-----C--HHHHHHHHHHhC
Q 009431 284 IKKIKATGCNVLLIQKSILRDAVTDL-SLHYLAKSKIMVVKDV-----E--RDEIEFITKTLN 338 (535)
Q Consensus 284 l~~i~~~~~~lvi~~~~I~~~~l~~~-~~~~l~~~~I~~v~~v-----~--~~~L~~ia~~tG 338 (535)
++.+...+++|||..... .+- ....|.+.||+++--- . .+.++.+..++|
T Consensus 62 ~E~ll~l~PDlii~~~~~-----~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGF-----QAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCC-----CchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 688888999999986655 443 6778888998664221 1 233566666666
No 79
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=20.84 E-value=2.8e+02 Score=28.04 Aligned_cols=56 Identities=7% Similarity=0.029 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCeee
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPI 342 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii 342 (535)
..++.+.+.++++|.+..+. ..-....+++.|+.++-.+..-+.-+-+.-.|+..+
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~-----p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGN-----PGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCC-----cHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 45677778899999887776 655778888889888877766555555656676555
No 80
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.82 E-value=2.2e+02 Score=27.10 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=36.8
Q ss_pred HHHHHhcCCcEEEEcCCccccccch-HHHHHHHhcCceeccCC--C----HHHHHHHHHHhCCe
Q 009431 284 IKKIKATGCNVLLIQKSILRDAVTD-LSLHYLAKSKIMVVKDV--E----RDEIEFITKTLNCL 340 (535)
Q Consensus 284 l~~i~~~~~~lvi~~~~I~~~~l~~-~~~~~l~~~~I~~v~~v--~----~~~L~~ia~~tGa~ 340 (535)
+|.|...+++|||..... ++ ...+.|.+.+++++-.. . .+.++.|+.++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~-----~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDC-----NVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCC-----CHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 688888999999986554 33 34778888888655321 2 34588888888865
No 81
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=20.27 E-value=2.1e+02 Score=23.38 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVE 326 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~ 326 (535)
...++.+ .++++||+ ++| .+-+...|.+.||.++.-..
T Consensus 53 ~~~~~~l--~~~~vvi~-~~i-----G~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 53 AARLEAL--EDCAILYC-AAI-----GGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred HHHHHHH--CCCcEEEE-hhc-----ChhHHHHHHHcCCEEEEcCC
Confidence 3444444 58999888 688 99999999999999986554
No 82
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=20.15 E-value=1e+02 Score=30.54 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHH
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERD 328 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~ 328 (535)
+++.+..+.|+++|++...- .+++.+..++.||..++.++..
T Consensus 212 emv~Ka~~aGipvivS~saP-----T~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAP-----TSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccc-----hHHHHHHHHHhCCEEEEEecCC
Confidence 46778888888988888888 8888888888888887766543
Done!