Query 009431
Match_columns 535
No_of_seqs 149 out of 1555
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ko1_A Chaperonin; 9-fold symm 100.0 3E-114 9E-119 933.6 54.2 527 1-534 1-532 (553)
2 3iyg_A T-complex protein 1 sub 100.0 1E-112 4E-117 919.3 59.3 508 20-534 3-527 (529)
3 3iyg_H T-complex protein 1 sub 100.0 2E-112 5E-117 914.6 58.7 502 21-534 5-513 (515)
4 3iyg_D T-complex protein 1 sub 100.0 1E-112 4E-117 916.8 57.3 510 19-535 3-518 (518)
5 3iyg_G T-complex protein 1 sub 100.0 4E-112 2E-116 911.9 59.3 507 21-534 3-513 (515)
6 3ruv_A Chaperonin, CPN; double 100.0 5E-112 2E-116 916.3 58.6 509 17-534 6-518 (543)
7 1q3q_A Thermosome alpha subuni 100.0 3E-112 1E-116 918.4 56.9 513 15-534 8-524 (548)
8 3p9d_D T-complex protein 1 sub 100.0 5E-114 2E-118 928.9 41.4 518 16-535 8-528 (528)
9 3iyg_B T-complex protein 1 sub 100.0 8E-112 3E-116 909.5 58.4 502 21-535 4-511 (513)
10 1a6d_B Thermosome (beta subuni 100.0 4E-112 1E-116 917.9 55.8 513 15-534 6-522 (543)
11 1a6d_A Thermosome (alpha subun 100.0 1E-111 4E-116 914.0 54.1 511 15-534 7-521 (545)
12 3p9d_A T-complex protein 1 sub 100.0 3E-112 1E-116 919.5 49.2 522 5-534 3-547 (559)
13 3iyg_E T-complex protein 1 sub 100.0 3E-110 1E-114 898.1 58.8 506 21-534 4-514 (515)
14 3iyg_Z T-complex protein 1 sub 100.0 2E-110 7E-115 898.3 54.6 503 21-534 4-516 (517)
15 3p9d_G T-complex protein 1 sub 100.0 8E-112 3E-116 915.0 41.5 511 14-534 8-526 (550)
16 3iyg_Q T-complex protein 1 sub 100.0 2E-109 6E-114 891.9 57.7 504 21-535 4-512 (512)
17 3p9d_C T-complex protein 1 sub 100.0 7E-111 2E-115 908.8 42.8 514 14-534 3-585 (590)
18 3p9d_E T-complex protein 1 sub 100.0 8E-110 3E-114 901.3 49.9 514 14-535 27-558 (562)
19 3p9d_H T-complex protein 1 sub 100.0 1E-110 3E-115 909.4 36.5 511 16-535 11-548 (568)
20 3p9d_F T-complex protein 1 sub 100.0 3E-109 1E-113 896.1 38.1 507 21-535 11-537 (546)
21 3p9d_B T-complex protein 1 sub 100.0 3E-109 1E-113 892.7 37.0 501 21-534 11-517 (527)
22 3aq1_B Thermosome subunit; gro 100.0 2E-102 6E-107 834.6 44.6 473 55-534 1-475 (500)
23 1we3_A CPN60(groel); chaperoni 100.0 2.9E-95 1E-99 782.7 45.5 461 20-534 3-524 (543)
24 1kp8_A Groel protein; chaperon 100.0 6.9E-95 2.4E-99 778.6 44.3 459 20-534 3-522 (547)
25 1iok_A Chaperonin 60; chaperon 100.0 1.2E-95 4E-100 785.2 34.1 460 20-534 4-524 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 4E-94 1.4E-98 770.6 33.9 458 20-534 3-520 (546)
27 1gml_A T-complex protein 1 sub 100.0 1.4E-36 4.9E-41 281.0 18.8 173 213-392 1-174 (178)
28 1ass_A Thermosome; chaperonin, 100.0 7.5E-32 2.6E-36 244.4 14.0 153 219-377 1-153 (159)
29 3m6c_A 60 kDa chaperonin 1; ch 99.6 5.4E-15 1.8E-19 133.8 9.9 153 216-408 2-171 (194)
30 3osx_A 60 kDa chaperonin; alph 99.5 3.1E-14 1.1E-18 129.1 11.8 149 220-408 13-178 (201)
31 1srv_A Protein (groel (HSP60 c 99.5 2E-14 6.9E-19 124.1 8.2 118 221-362 1-135 (145)
32 3v7e_A Ribosome-associated pro 52.3 18 0.00061 27.7 4.5 54 282-339 18-71 (82)
33 2xzm_U Ribosomal protein L7AE 52.3 26 0.00088 29.3 5.9 55 282-339 31-85 (126)
34 1o13_A Probable NIFB protein; 52.0 26 0.00087 29.6 6.0 52 283-340 68-119 (136)
35 1vq8_F 50S ribosomal protein L 51.6 28 0.00096 28.7 6.0 55 282-339 36-90 (120)
36 2lbw_A H/ACA ribonucleoprotein 50.8 37 0.0013 28.0 6.6 54 282-338 27-80 (121)
37 1xbi_A 50S ribosomal protein L 50.5 26 0.00088 29.0 5.6 55 282-339 36-90 (120)
38 2fc3_A 50S ribosomal protein L 50.4 29 0.00098 28.8 5.9 55 282-339 35-89 (124)
39 3v7q_A Probable ribosomal prot 49.2 26 0.00088 27.9 5.2 55 282-340 26-80 (101)
40 2yx6_A Hypothetical protein PH 48.8 29 0.00099 28.4 5.7 53 282-340 54-106 (121)
41 1rlg_A 50S ribosomal protein L 48.1 27 0.00092 28.8 5.3 56 281-339 33-88 (119)
42 1eo1_A Hypothetical protein MT 47.3 40 0.0014 27.6 6.4 52 283-340 57-108 (124)
43 3o85_A Ribosomal protein L7AE; 46.9 37 0.0013 28.1 6.0 56 281-339 37-92 (122)
44 2wfb_A Putative uncharacterize 43.4 33 0.0011 28.0 5.2 51 283-339 59-110 (120)
45 3on1_A BH2414 protein; structu 39.6 42 0.0015 26.6 5.1 56 281-340 24-79 (101)
46 2aif_A Ribosomal protein L7A; 38.3 37 0.0013 28.7 4.7 56 282-340 48-103 (135)
47 2re2_A Uncharacterized protein 37.8 59 0.002 27.3 6.0 52 282-340 70-121 (136)
48 1rdu_A Conserved hypothetical 35.4 39 0.0013 27.3 4.3 52 283-340 54-105 (116)
49 3cpq_A 50S ribosomal protein L 34.1 75 0.0026 25.6 5.8 55 281-339 27-82 (110)
50 2ale_A SNU13, NHP2/L7AE family 34.1 56 0.0019 27.6 5.2 55 282-339 39-93 (134)
51 3jyw_G 60S ribosomal protein L 34.0 28 0.00094 28.6 3.1 57 282-341 32-88 (113)
52 3u5c_M 40S ribosomal protein S 32.8 45 0.0015 28.5 4.3 56 281-339 46-103 (143)
53 4a18_G RPL30; ribosome, eukary 30.4 78 0.0027 25.2 5.3 55 281-339 28-83 (104)
54 3izc_H 60S ribosomal protein R 27.7 93 0.0032 29.2 5.9 56 281-339 137-192 (256)
55 3psh_A Protein HI_1472; substr 26.4 85 0.0029 30.1 5.9 52 284-340 77-154 (326)
56 2kg4_A Growth arrest and DNA-d 26.1 62 0.0021 28.3 4.1 49 288-336 50-104 (165)
57 3u5e_c L32, RP73, YL38, 60S ri 25.6 1.1E+02 0.0039 24.3 5.4 55 281-339 28-83 (105)
58 2zkr_f 60S ribosomal protein L 25.2 1.2E+02 0.004 28.7 6.1 55 282-339 142-196 (266)
59 2qtd_A Uncharacterized protein 25.2 1.2E+02 0.004 23.9 5.5 48 285-339 50-97 (105)
60 1w41_A 50S ribosomal protein L 24.9 1E+02 0.0035 24.2 5.0 55 281-339 22-77 (101)
61 3iz5_f 60S ribosomal protein L 23.0 1.6E+02 0.0056 23.7 6.0 55 281-339 32-87 (112)
62 3j21_Z 50S ribosomal protein L 21.6 87 0.003 24.6 3.9 47 282-329 22-69 (99)
63 2q8p_A Iron-regulated surface 21.4 95 0.0033 28.6 4.9 52 284-340 53-110 (260)
64 3fst_A 5,10-methylenetetrahydr 20.8 2.4E+02 0.0081 27.2 7.6 61 277-342 166-232 (304)
65 2etv_A Iron(III) ABC transport 20.5 1.2E+02 0.004 29.6 5.5 52 284-340 89-151 (346)
No 1
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=2.7e-114 Score=933.56 Aligned_cols=527 Identities=38% Similarity=0.598 Sum_probs=487.3
Q ss_pred CCCCCCCCCCCCCCceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhcccc
Q 009431 1 MASPAVVPSQPRSSKTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKME 77 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~ 77 (535)
|||.|.+..|....|+.+++ ++.+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~ 80 (553)
T 3ko1_A 1 MASTATVATTPEGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMD 80 (553)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSC
T ss_pred CCccceeecCCCCCeEEEEecCcccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhh
Confidence 78889888888778999987 888999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHH
Q 009431 78 VLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDS 157 (535)
Q Consensus 78 ~~hP~a~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~ 157 (535)
++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||+.|++.++++|++++++++..+++.
T Consensus 81 v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~ 160 (553)
T 3ko1_A 81 LQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDL 160 (553)
T ss_dssp CCSHHHHHHHHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHH
T ss_pred ccChhHHHHHHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998778999
Q ss_pred HHHHHHHHhcCcccchhhhhHHHHHHHHHHhccCCC-CCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCce
Q 009431 158 LVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPC-KPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPT 236 (535)
Q Consensus 158 l~~va~tsl~sk~~~~~~~~ls~li~~a~~~v~~~~-~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~ 236 (535)
|.++|+|+++||+.++|+++|+++++||+.++++.. +...+|+++|+|++..|+++.||++++|++|+++ +.+++||+
T Consensus 161 L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~-~~~~~m~~ 239 (553)
T 3ko1_A 161 LRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKE-VVHPGMPK 239 (553)
T ss_dssp HHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSC-BSCTTSCS
T ss_pred HHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEeccc-ccCCCCcc
Confidence 999999999999999999999999999999998752 2124888999999999999999999999999766 56788999
Q ss_pred eeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHh
Q 009431 237 RVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAK 316 (535)
Q Consensus 237 ~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~ 316 (535)
.++||||++++++|+++++++++++.++++++++.+++.|++++++++++|.+.|+||||++++| ++.+++||.+
T Consensus 240 ~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I-----~~~al~~L~~ 314 (553)
T 3ko1_A 240 RLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGI-----DEVAQSYLAK 314 (553)
T ss_dssp CCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCB-----CSHHHHHHHH
T ss_pred ccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccCh-----HHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cCceeccCCCHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHH
Q 009431 317 SKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDE 396 (535)
Q Consensus 317 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e 396 (535)
+||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.+ ++.|||+|||+|+.+++|
T Consensus 315 ~gI~~v~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~-~~~~TI~lrG~te~~l~E 393 (553)
T 3ko1_A 315 KGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKN-PKSISILIRGGLERLVDE 393 (553)
T ss_dssp HTCEEECCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSS-SSCEEEEECCSSTTHHHH
T ss_pred cchhhhhhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCC-CceEEEeeeccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHH
Q 009431 397 AERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTEL 476 (535)
Q Consensus 397 ~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l 476 (535)
+||+++|||+++|++++++++|||||++|++|+.+|++++.++++++|+++++|++||+.||++|++|||+|+.+++.+|
T Consensus 394 ~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l 473 (553)
T 3ko1_A 394 TERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKL 473 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999988999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 477 RNRHAQGE-INSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 477 ~~~h~~~~-~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
++.|..++ .++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.+
T Consensus 474 ~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 532 (553)
T 3ko1_A 474 RSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSA 532 (553)
T ss_dssp HHTTCSGGGTTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC
T ss_pred HHHhhCcCCceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHh
Confidence 99987665 78999999999999999999999999999999999999999999999975
No 2
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.1e-112 Score=919.28 Aligned_cols=508 Identities=34% Similarity=0.535 Sum_probs=487.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCC
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGD 99 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 99 (535)
.++++|.+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||
T Consensus 3 ~~~~~g~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~GD 82 (529)
T 3iyg_A 3 GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGD 82 (529)
T ss_pred cchhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHc-cceeCCCCCHHHHHHHHHHHhcCcccchhhhhH
Q 009431 100 GTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLL 178 (535)
Q Consensus 100 Gttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~-~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~l 178 (535)
||||++|||++||+++.+++++|+||+.|++||+.|++.++++|++ ++++++..+++.|.++|+|+++||+.++|+++|
T Consensus 83 GTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~i 162 (529)
T 3iyg_A 83 GTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFF 162 (529)
T ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccccHHHH
Confidence 9999999999999999999999999999999999999999999998 999988668899999999999999999999999
Q ss_pred HHHHHHHHHhccCC--CCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCcc
Q 009431 179 APLAVDSVLSVVDP--CKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTD 256 (535)
Q Consensus 179 s~li~~a~~~v~~~--~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~ 256 (535)
+++++||+.++++. .+...||+++|+|++.+|+++.||++++|++|+++ +.+++||+.++||||++++++|++++++
T Consensus 163 ~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~-~~~~~m~~~ien~kIlll~~~le~~k~e 241 (529)
T 3iyg_A 163 ANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCV-VGSQGMPKRIVNAKIACLDFSLQKTKMK 241 (529)
T ss_pred HHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecC-cccccCCcccCCceEEEecCCccccccc
Confidence 99999999999742 22236788889999999999999999999999765 5678999999999999999999999999
Q ss_pred ccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHH
Q 009431 257 IEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKT 336 (535)
Q Consensus 257 ~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~ 336 (535)
+++++.++++++++++.+.|++++++++++|.+.|+||||++++| ++++++||.++||++++++++++|+|||++
T Consensus 242 ~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I-----~d~al~~L~~~gI~av~~v~k~~leria~~ 316 (529)
T 3iyg_A 242 LGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 316 (529)
T ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHHcCCceeccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hCCeeeccccCCC------CCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 009431 337 LNCLPIANIDHFR------AEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRC 410 (535)
Q Consensus 337 tGa~ii~~~~~l~------~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 410 (535)
|||++++++++++ ++++|+|+.|++.++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++|||+++|+
T Consensus 317 tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~ 395 (529)
T 3iyg_A 317 SGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKA-RTSASVILRGANDFMCDEMERSLHDALCVVKR 395 (529)
T ss_pred hCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCC-CceEEEEECCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987664 5789999999999999999999999988 89999999999999999999999999999999
Q ss_pred HHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCC------
Q 009431 411 LVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGE------ 484 (535)
Q Consensus 411 ~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~------ 484 (535)
+++++++|||||++|++|+.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++
T Consensus 396 ~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~ 475 (529)
T 3iyg_A 396 VLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERK 475 (529)
T ss_pred HhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred --CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 485 --INSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 485 --~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
.++|||+.+|++.||++.|||||+.||+++|++|+|+|+||||||+||+.
T Consensus 476 ~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 527 (529)
T 3iyg_A 476 NLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 527 (529)
T ss_pred cCceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 68999999999999999999999999999999999999999999999975
No 3
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.5e-112 Score=914.63 Aligned_cols=502 Identities=34% Similarity=0.560 Sum_probs=485.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
++.+|.+++..||.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|||
T Consensus 5 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~~GDG 84 (515)
T 3iyg_H 5 DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDG 84 (515)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhceeCcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCC----HHHHHHHHHHHhcCcccchhhh
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD----RDSLVKSASTSLNSKVVSQYST 176 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~----~~~l~~va~tsl~sk~~~~~~~ 176 (535)
|||++|||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++..+ ++.|.++|+|+++||+++.+++
T Consensus 85 TTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s~~~~ 164 (515)
T 3iyg_H 85 TTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKA 164 (515)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCcccccHH
Confidence 999999999999999999999999999999999999999999999999986445 6778999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCC---CceeeecceEEEEeeecCCC
Q 009431 177 LLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAG---GPTRVENAKIAVIQFQISPP 253 (535)
Q Consensus 177 ~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~---~~~~~~n~~Ill~~~~L~~~ 253 (535)
+|+++++||+.+++. .+|+++|+|+++.|+++.||++++|++|++++. |++ ||+.++||+|++++++|+++
T Consensus 165 ~i~~livdAv~~V~~-----~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~-~p~~~~~p~~~en~kIll~~~~Le~~ 238 (515)
T 3iyg_H 165 FFAKMVVDAVMMLDD-----LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFS-YAGFEMQPKKYHNPMIALLNVELELK 238 (515)
T ss_pred HHHHHHHHHHHHhcc-----cCCcceEEEEecCCCCccceEEEeeeEEecCcc-CcccccCCccccccEEEEEccccccc
Confidence 999999999999973 578899999999999999999999999987754 554 58899999999999999999
Q ss_pred CccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHH
Q 009431 254 KTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFI 333 (535)
Q Consensus 254 ~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~i 333 (535)
+++.++++.++++++++.+++.|+++++++++++.+.|+||||++++| ++++++||+++||++++++++++|+||
T Consensus 239 k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I-----~dla~~~l~~~gI~~v~~~~k~~leri 313 (515)
T 3iyg_H 239 AEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRT 313 (515)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcc-----cHHHHHHHHHcCCcccccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009431 334 TKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVS 413 (535)
Q Consensus 334 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 413 (535)
|++|||++++++++++++++|+|+.|++.++|+++|++|++|.+ ++.|||+|||+|+.+++|.||+++|||+++|++++
T Consensus 314 a~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~ 392 (515)
T 3iyg_H 314 MMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIK 392 (515)
T ss_pred HHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCC-CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred cCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccC
Q 009431 414 KRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRK 493 (535)
Q Consensus 414 ~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~ 493 (535)
++++|||||++|++++.+|++++++.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+
T Consensus 393 ~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~ 472 (515)
T 3iyg_H 393 NDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINT 472 (515)
T ss_pred CCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCC
Confidence 99999999999999999999999989999999999999999999999999999999999999999998777789999999
Q ss_pred CcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 494 GQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 494 ~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
|++.||++.|||||+.||+++|++|+|+|+||||||++|++
T Consensus 473 g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 513 (515)
T 3iyg_H 473 EDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKN 513 (515)
T ss_pred CcccccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999986
No 4
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.2e-112 Score=916.84 Aligned_cols=510 Identities=65% Similarity=1.013 Sum_probs=491.0
Q ss_pred eccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccC
Q 009431 19 YVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAG 98 (535)
Q Consensus 19 ~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 98 (535)
++++++|.+++..||.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 3 ~~~~~~g~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~G 82 (518)
T 3iyg_D 3 YQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAG 82 (518)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhH
Q 009431 99 DGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLL 178 (535)
Q Consensus 99 DGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~l 178 (535)
|||||++|||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++..+++.|.++|+|+++||+.++|.++|
T Consensus 83 DGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~vA~tsl~sK~~~~~~~~i 162 (518)
T 3iyg_D 83 DGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLL 162 (518)
T ss_pred CCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCChHHHHHHhHhhhccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999998778899999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCcccc
Q 009431 179 APLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIE 258 (535)
Q Consensus 179 s~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~ 258 (535)
+++++||+.+++++.+.+.+|+++|+|+++.|++..||++++|++|++++. + +||++++||+|++++|+|++++++++
T Consensus 163 ~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~-~-~mp~~i~n~kIlll~~~Le~~k~~~~ 240 (518)
T 3iyg_D 163 SPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVA-N-SGITRVEKAKIGLIQFCLSAPKTDMD 240 (518)
T ss_pred HHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEecccc-c-CCCccccCceEEEEEeeccccccccC
Confidence 999999999998532234688899999999999999999999999987754 5 89999999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE-----cCCccccccchHHHHHHHhcCceeccCCCHHHHHHH
Q 009431 259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLI-----QKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFI 333 (535)
Q Consensus 259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~-----~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~i 333 (535)
.++.+++++++++++++|+++++++++++.+.|+||||+ +++| ++.+++||.++||++++++++.+|+||
T Consensus 241 ~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I-----~~~Al~~L~~~~I~av~~~~~~~le~i 315 (518)
T 3iyg_D 241 NQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDAL-----SDLALHFLNKMKIMVVKDIEREDIEFI 315 (518)
T ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCc-----CHHHHHHHHHcCcEEEecCCHHHHHHH
Confidence 999999999999999999999999999999999999999 6777 999999999999999999999999999
Q ss_pred HHHhCCeeeccccCCCCCCceeeeEEEEEEecc-eEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009431 334 TKTLNCLPIANIDHFRAEKLGHADLVEELSLGD-GKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLV 412 (535)
Q Consensus 334 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~-~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~ 412 (535)
|++|||++++++++++++++|+|+.|++.++|+ ++|++|++|+++++.|||+|||+|+.+++|.||+++|||+++|+++
T Consensus 316 a~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av 395 (518)
T 3iyg_D 316 CKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLV 395 (518)
T ss_pred HHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 8999999998667899999999999999999999999999999999
Q ss_pred hcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEcc
Q 009431 413 SKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVR 492 (535)
Q Consensus 413 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~ 492 (535)
+++++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.
T Consensus 396 ~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 475 (518)
T 3iyg_D 396 KKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVR 475 (518)
T ss_pred hCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCC
Confidence 99889999999999999999999988999999999999999999999999999999999999999999877788999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 493 KGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 493 ~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
+|++.||++.|||||+.||+++|+.|+|+|++|||||+||++|
T Consensus 476 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 518 (518)
T 3iyg_D 476 KGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 518 (518)
T ss_pred CCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEecC
Confidence 9999999999999999999999999999999999999999886
No 5
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=4.5e-112 Score=911.91 Aligned_cols=507 Identities=32% Similarity=0.535 Sum_probs=486.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
++++|.+++..||.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|||
T Consensus 3 ~~~~g~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 82 (515)
T 3iyg_G 3 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDG 82 (515)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
|||+++||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++..|++.|.++|+|+++||.+++|.+++++
T Consensus 83 TTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~~~~ 162 (515)
T 3iyg_G 83 TTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACN 162 (515)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877789999999999999999999999999
Q ss_pred HHHHHHHhccCCC-CCCCcccc-cEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCcccc
Q 009431 181 LAVDSVLSVVDPC-KPDLVDLR-DIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIE 258 (535)
Q Consensus 181 li~~a~~~v~~~~-~~~~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~ 258 (535)
+++||+..+.+.. +...+|++ +|+|++++||+++||++++|++|+++ +.+++||+.++||+|++++++|++++++.+
T Consensus 163 i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~-~~~~~m~~~ien~kIll~~~~Le~~k~e~~ 241 (515)
T 3iyg_G 163 IALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKD-VTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 241 (515)
T ss_pred HHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCC-CCCCCCcceeeeeEEEEEcccccccccccC
Confidence 9999999887322 22246664 49999999999999999999999765 667899999999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431 259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338 (535)
Q Consensus 259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 338 (535)
+++.+++++++..+++.|++++++++++|.+.|++|||++++| ++++++||.++||++++++++++|+|||++||
T Consensus 242 ~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I-----~~~al~~L~~~~I~av~~~~k~~leria~~tG 316 (515)
T 3iyg_G 242 TDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGI-----SDLAQHYLMRANITAIRRVRKTDNNRIARACG 316 (515)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCcc-----CHHHHHHHHHCCceeeccCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CeeeccccCCCCCCcee-eeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 009431 339 CLPIANIDHFRAEKLGH-ADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFL 417 (535)
Q Consensus 339 a~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~v 417 (535)
|++++++++++++++|+ |+.|++.++|+++|++|++|++ ++.|||+|||+|+.+++|.||+++|||+++|++++++++
T Consensus 317 a~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~i 395 (515)
T 3iyg_G 317 ARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKD-PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQL 395 (515)
T ss_pred CeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCC-CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 99999999999999999 9999999999999999999988 899999999999999999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCceeEEccCCcc
Q 009431 418 IAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQG-EINSGINVRKGQI 496 (535)
Q Consensus 418 vpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-~~~~Gid~~~~~~ 496 (535)
|||||++|++++.+|++++++.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+ +.++|||+.+|++
T Consensus 396 vpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~ 475 (515)
T 3iyg_G 396 VPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTL 475 (515)
T ss_pred EeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999998753 4579999999999
Q ss_pred cccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 497 TNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 497 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
.||++.|||||+.||+++|++|+|+|++|||||++|..
T Consensus 476 ~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 513 (515)
T 3iyg_G 476 VDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSG 513 (515)
T ss_pred cccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeec
Confidence 99999999999999999999999999999999999874
No 6
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=4.7e-112 Score=916.27 Aligned_cols=509 Identities=40% Similarity=0.630 Sum_probs=492.9
Q ss_pred Eeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhc
Q 009431 17 ESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQ 93 (535)
Q Consensus 17 ~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 93 (535)
.+++ ++.+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|
T Consensus 6 ~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~q 85 (543)
T 3ruv_A 6 GVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQ 85 (543)
T ss_dssp CSSCSSEEEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHHH
T ss_pred eeecCCcchhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 5565 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccch
Q 009431 94 DAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQ 173 (535)
Q Consensus 94 ~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~ 173 (535)
|+++||||||++|||++||+++.+++++|+||..|++||+.|++.++++|+++++|++..|++.|.++|+|+++||+.++
T Consensus 86 d~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~L~~va~tsl~sK~~~~ 165 (543)
T 3ruv_A 86 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEK 165 (543)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHHHHTCGGG
T ss_pred HhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999999999987789999999999999999999
Q ss_pred hhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCC
Q 009431 174 YSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPP 253 (535)
Q Consensus 174 ~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~ 253 (535)
|+++|+++++||+.+++++. +.+|+++|+|++..|+++.||++++|++|+++ +.+++|++.++||+|++++++|+++
T Consensus 166 ~~~~i~~livdAv~~V~~~~--g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~-~~~~~m~~~~~n~kIll~~~~Le~~ 242 (543)
T 3ruv_A 166 AKEKLAEIIVEAVSAVVDDE--GKVDKDLIKIEKKSGASIDDTELIKGVLVDKE-RVSAQMPKKVTDAKIALLNCAIEIK 242 (543)
T ss_dssp CCHHHHHHHHHHHHHHCCTT--SCCCGGGEEEEEEECSCGGGCEEESSEEESCC-CSCTTSCSEEEEEEEEEESSCBSCC
T ss_pred hHHHHHHHHHHHHHHhhccC--CCcccceEEEEEcCCCCcccceeecceEEecc-ccCccccccccCcEEEEEccccccc
Confidence 99999999999999998751 24888999999999999999999999999766 5578899999999999999999999
Q ss_pred CccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHH
Q 009431 254 KTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFI 333 (535)
Q Consensus 254 ~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~i 333 (535)
++++++++.++++++++.+++.|++++++++++|.+.|+||||++++| ++.+++||.++||++++++++++|+||
T Consensus 243 k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I-----~~~al~~L~~~gI~~v~~v~k~~le~i 317 (543)
T 3ruv_A 243 ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVAARRVKKSDMEKL 317 (543)
T ss_dssp CCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCB-----CHHHHHHHHHTTCEEECSCCHHHHHHH
T ss_pred ccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCc-----cHHHHHHHHHcCcEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009431 334 TKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVS 413 (535)
Q Consensus 334 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 413 (535)
|++|||++++++++++++++|+|+.|++.++|++++++|++|.+ +..|||+|||+|+.+++|.||+++|||+++|++++
T Consensus 318 a~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~ 396 (543)
T 3ruv_A 318 AKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKH-PKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIE 396 (543)
T ss_dssp HHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSS-CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCC-CceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred cCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhh-cCCCceeEEcc
Q 009431 414 KRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHA-QGEINSGINVR 492 (535)
Q Consensus 414 ~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~-~~~~~~Gid~~ 492 (535)
++++|||||++|++|+.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|. .++.++|||+.
T Consensus 397 ~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~ 476 (543)
T 3ruv_A 397 DGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVF 476 (543)
T ss_dssp HCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTT
T ss_pred cCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCC
Confidence 98899999999999999999999889999999999999999999999999999999999999999997 67788999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 493 KGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 493 ~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+
T Consensus 477 ~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~ 518 (543)
T 3ruv_A 477 TGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAA 518 (543)
T ss_dssp TCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheec
Confidence 999999999999999999999999999999999999999975
No 7
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=3.3e-112 Score=918.36 Aligned_cols=513 Identities=40% Similarity=0.627 Sum_probs=493.6
Q ss_pred ceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHh
Q 009431 15 KTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSK 91 (535)
Q Consensus 15 ~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 91 (535)
|+.+++ ++.+|.+++..|++||..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||+|+|++++|+
T Consensus 8 ~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 87 (548)
T 1q3q_A 8 PVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAK 87 (548)
T ss_dssp -CCCSCTTCEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred CcccccCCcceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHH
Confidence 455665 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCccc
Q 009431 92 SQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVV 171 (535)
Q Consensus 92 ~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~ 171 (535)
+||+++||||||+++||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++..|++.|.++|+|+++||+.
T Consensus 88 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~ 167 (548)
T 1q3q_A 88 TQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNA 167 (548)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCSSTT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999866799999999999999999
Q ss_pred chhhhhHHHHHHHHHHhccCCC-CCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeec
Q 009431 172 SQYSTLLAPLAVDSVLSVVDPC-KPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQI 250 (535)
Q Consensus 172 ~~~~~~ls~li~~a~~~v~~~~-~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L 250 (535)
++|+++|+++++||+.+++++. +...+|+++|+|++++|++++||++++|++|+++ +.+++||+.++||+|++++++|
T Consensus 168 ~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~-~~~~~m~~~ien~kIll~~~~L 246 (548)
T 1q3q_A 168 ESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKE-VVHPRMPKRVENAKIALINEAL 246 (548)
T ss_dssp GGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCC-CSSTTSCSEESSEEEEEECSCB
T ss_pred ccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEecc-CCCCCCcceecCCEEEEEecCc
Confidence 9999999999999999998642 1235788899999999999999999999999665 6678899999999999999999
Q ss_pred CCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHH
Q 009431 251 SPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEI 330 (535)
Q Consensus 251 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L 330 (535)
++++++.++++.++++++++.++++|+++++++++++.+.|+||||++++| ++.+++||.++||++++++++++|
T Consensus 247 e~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~av~~~~k~~l 321 (548)
T 1q3q_A 247 EVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKYGIMAVRRVKKSDM 321 (548)
T ss_dssp SCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCB-----CHHHHHHHHHTTCEEECSCCHHHH
T ss_pred CcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCc-----CHHHHHHHHHCCcEEEccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 009431 331 EFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRC 410 (535)
Q Consensus 331 ~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 410 (535)
+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.. ++.|||+|||+|+.+++|.||+++|||+++|+
T Consensus 322 e~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~ 400 (548)
T 1q3q_A 322 EKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN-PKAVTILIRGGTEHVIDEVERALEDAVKVVKD 400 (548)
T ss_dssp HHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSS-CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CCeEEEEECCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred HHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEE
Q 009431 411 LVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGIN 490 (535)
Q Consensus 411 ~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid 490 (535)
+++++++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||
T Consensus 401 a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d 480 (548)
T 1q3q_A 401 VMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGID 480 (548)
T ss_dssp HHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCccee
Confidence 99998899999999999999999999888999999999999999999999999999999999999999987666789999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 491 VRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 491 ~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
..+|++.||++.|||||+.||+++|++|+|+|++|||||++|..
T Consensus 481 ~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~ 524 (548)
T 1q3q_A 481 VFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA 524 (548)
T ss_dssp TTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CCCCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999975
No 8
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=4.8e-114 Score=928.89 Aligned_cols=518 Identities=59% Similarity=0.942 Sum_probs=498.4
Q ss_pred eEeeccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhccc
Q 009431 16 TESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDA 95 (535)
Q Consensus 16 ~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~ 95 (535)
....+++.+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++||+
T Consensus 8 ~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~ 87 (528)
T 3p9d_D 8 NATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDS 87 (528)
T ss_dssp CCSSCBCCCHHHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred ccccchhcchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHhhh
Confidence 33467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhh
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (535)
++||||||++|||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++..+++.|.++|+|+++||++++|+
T Consensus 88 e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~ 167 (528)
T 3p9d_D 88 EAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYS 167 (528)
T ss_dssp HTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCHHHHHHHHHHHSCSSSCSTTH
T ss_pred hhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCccchhH
Confidence 99999999999999999999999999999999999999999999999999999998778999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCC-CceeeecceEEEEeeecCCCC
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAG-GPTRVENAKIAVIQFQISPPK 254 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~-~~~~~~n~~Ill~~~~L~~~~ 254 (535)
++|+++++||+.++++.. .+.+|+++|+|++++|++++||++++|++|++++. ++. ||+.++||+|++++++|++++
T Consensus 168 ~~i~~livdAv~~V~~~~-~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~-~~~~m~~~ien~kIll~~~~le~~k 245 (528)
T 3p9d_D 168 SFLAPLAVDSVLKISDEN-SKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAI-KSAGGPTRKEKAKIGLIQFQISPPK 245 (528)
T ss_dssp HHHHHHHHHHHHTTCCTT-TTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCC-CSSSCCSEESSEEEEEECCCSSCCC
T ss_pred HHHHHHHHHHHHHhcccc-CCccceEEEEEEEecCCCccceEEEeeeEEeeccc-CcccCcccccCceEEEEeccccccc
Confidence 999999999999998642 23688899999999999999999999999977755 555 999999999999999999999
Q ss_pred ccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHH
Q 009431 255 TDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFIT 334 (535)
Q Consensus 255 ~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia 334 (535)
+++++++.+++++++++++++|+++++++++++.+.|+||||++++|.+||+++++++||.++||++++++++++|+|||
T Consensus 246 ~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le~ia 325 (528)
T 3p9d_D 246 PDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLS 325 (528)
T ss_dssp CSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHHHHH
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEeccc--CCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009431 335 KTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIK--DMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLV 412 (535)
Q Consensus 335 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~--~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~ 412 (535)
++|||++++++++++++++|+|+.|++.++|+++|++|++|+ +.++.|||+|||+|+.+++|.||+++|||+++|+++
T Consensus 326 ~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av 405 (528)
T 3p9d_D 326 KGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLV 405 (528)
T ss_dssp HHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987 327899999999999999999999999999999999
Q ss_pred hcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEcc
Q 009431 413 SKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVR 492 (535)
Q Consensus 413 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~ 492 (535)
+++++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|||+.
T Consensus 406 ~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~ 485 (528)
T 3p9d_D 406 KERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVR 485 (528)
T ss_dssp HSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSS
T ss_pred hcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecC
Confidence 99889999999999999999999888899999999999999999999999999999999999999988877788999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 493 KGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 493 ~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
+|++.||++.|||||+.||+++|+.|+|+|++|||||+||++|
T Consensus 486 ~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 528 (528)
T 3p9d_D 486 RSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFSR 528 (528)
T ss_dssp SSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBCC
T ss_pred CCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheecC
Confidence 9999999999999999999999999999999999999999986
No 9
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=8.2e-112 Score=909.46 Aligned_cols=502 Identities=32% Similarity=0.525 Sum_probs=486.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCC--CCeEEccchHHHhccccccChHHHHHHHHHhhcccccC
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTAS--GEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAG 98 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~--g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 98 (535)
++++|.+++..|+.||..|+++|++||||+||+|||+++. |+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 4 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e~G 83 (513)
T 3iyg_B 4 DEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVG 83 (513)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhhhC
Confidence 6789999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCC---CHHHHHHHHHHHhcCcccchhh
Q 009431 99 DGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELS---DRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 99 DGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~---~~~~l~~va~tsl~sk~~~~~~ 175 (535)
|||||++|||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++.. +++.|.++|+|+++||+.++++
T Consensus 84 DGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslssK~~~~~~ 163 (513)
T 3iyg_B 84 DGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHK 163 (513)
T ss_pred CChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhcccccccch
Confidence 9999999999999999999999999999999999999999999999999988732 5789999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCc
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKT 255 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~ 255 (535)
++|+++++||+.++++ .+|+++|+|+++.|+++.||++++|++|++++ .++ ||+.++||+|+++|++|+++++
T Consensus 164 ~~i~~livdAv~~V~~-----~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~-~~~-m~~~~en~kIll~~~~Le~~k~ 236 (513)
T 3iyg_B 164 DHFTKLAVEAVLRLKG-----SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKI-GVN-QPKRIENAKILIANTGMDTDKI 236 (513)
T ss_pred HHHHHHHHHHHHHhcc-----cCCcCeEEEEEeCCCCccceeEEeeEEEeccc-cCC-CceeecCceEEEEcCCcccccc
Confidence 9999999999999985 37788999999999999999999999997765 455 9999999999999999999999
Q ss_pred c-ccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHH
Q 009431 256 D-IEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFIT 334 (535)
Q Consensus 256 ~-~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia 334 (535)
+ +++++.+++++++..+.+.|+++++++++++.+.|+||||++++| ++++++||.++||++++++++.+|+|||
T Consensus 237 e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I-----~~~al~~L~~~~I~av~~~~~~~le~ia 311 (513)
T 3iyg_B 237 KIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLI-----YNYPEQLFGAAGVMAIEHADFVGVERLA 311 (513)
T ss_pred cccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCc-----cHHHHHHHHHcCceEEecCCHHHHHHHH
Confidence 9 899999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 009431 335 KTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSK 414 (535)
Q Consensus 335 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 414 (535)
++|||++++++++++++++|+|+.|++..+|+++|++|++|+. ++.|||+|||+|+.+++|.||+++|||+++|+++++
T Consensus 312 ~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~ 390 (513)
T 3iyg_B 312 LVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKD 390 (513)
T ss_pred HHhCCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999988 889999999999999999999999999999999999
Q ss_pred CcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCC
Q 009431 415 RFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKG 494 (535)
Q Consensus 415 ~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~ 494 (535)
+++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|
T Consensus 391 ~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g 470 (513)
T 3iyg_B 391 SRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEG 470 (513)
T ss_pred CcEEeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCC
Confidence 99999999999999999999998899999999999999999999999999999999999999999988878999999999
Q ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 495 QITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 495 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
++.||++.|||||+.||+++|++|+|+|++|||||++|+++
T Consensus 471 ~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~ 511 (513)
T 3iyg_B 471 TIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAA 511 (513)
T ss_pred CccchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999763
No 10
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=3.8e-112 Score=917.87 Aligned_cols=513 Identities=38% Similarity=0.620 Sum_probs=485.7
Q ss_pred ceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHh
Q 009431 15 KTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSK 91 (535)
Q Consensus 15 ~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 91 (535)
|+.+++ ++.+|.+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 6 ~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 85 (543)
T 1a6d_B 6 PIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSK 85 (543)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHT
T ss_pred chhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHHH
Confidence 455665 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCccc
Q 009431 92 SQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVV 171 (535)
Q Consensus 92 ~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~ 171 (535)
+||+++||||||+++||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++..|++.|.++|+|+++||+.
T Consensus 86 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~sKi~ 165 (543)
T 1a6d_B 86 TQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSA 165 (543)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHTTSGG
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999865689999999999999999
Q ss_pred chhhhhHHHHHHHHHHhccCCC-CCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeec
Q 009431 172 SQYSTLLAPLAVDSVLSVVDPC-KPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQI 250 (535)
Q Consensus 172 ~~~~~~ls~li~~a~~~v~~~~-~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L 250 (535)
++|+++|+++++||+.++++.. +...+|+++|+|++++|++++||++++|++|+++ +.+++||+.++||+|++++++|
T Consensus 166 ~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~-~~~~~m~~~ien~kIll~~~~L 244 (543)
T 1a6d_B 166 SVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKE-KVHPGMPDVVKDAKIALLDAPL 244 (543)
T ss_dssp GGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCC-CSSTTSCSEEEEEEEEEESSCB
T ss_pred cccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecC-CCCCCCcceecCCeEEEEeccc
Confidence 9999999999999999998642 1125888899999999999999999999999765 6678899999999999999999
Q ss_pred CCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHH
Q 009431 251 SPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEI 330 (535)
Q Consensus 251 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L 330 (535)
++++++.++++.++++++++.+++.|+++++++++++.+.|+||||++++| ++.+++||.++||++++++++++|
T Consensus 245 e~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~av~~v~k~~l 319 (543)
T 1a6d_B 245 EIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI-----DDMAQHYLSRAGIYAVRRVKKSDM 319 (543)
T ss_dssp SCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB-----CHHHHHHHHHTTCEEECSCCHHHH
T ss_pred ccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCc-----CHHHHHHHHHCCeeEeccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 009431 331 EFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRC 410 (535)
Q Consensus 331 ~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 410 (535)
+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++|||+++|+
T Consensus 320 e~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~ 398 (543)
T 1a6d_B 320 DKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKN-PKAVSILVRGETEHVVDEMERSITDSLHVVAS 398 (543)
T ss_dssp HHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESS-SSCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred HHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEE
Q 009431 411 LVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGIN 490 (535)
Q Consensus 411 ~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid 490 (535)
+++++++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+..++|||
T Consensus 399 a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d 478 (543)
T 1a6d_B 399 ALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGIN 478 (543)
T ss_dssp HHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEE
T ss_pred HHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEe
Confidence 99998899999999999999999999888999999999999999999999999999999999999999998777789999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 491 VRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 491 ~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
..+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.+
T Consensus 479 ~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~ 522 (543)
T 1a6d_B 479 VFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIAT 522 (543)
T ss_dssp TTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC-
T ss_pred CCCCcccchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999975
No 11
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=1e-111 Score=913.98 Aligned_cols=511 Identities=40% Similarity=0.621 Sum_probs=487.2
Q ss_pred ceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHh
Q 009431 15 KTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSK 91 (535)
Q Consensus 15 ~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 91 (535)
|+.+++ ++.+|.+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||+|+|++++|+
T Consensus 7 ~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 86 (545)
T 1a6d_A 7 PILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSK 86 (545)
T ss_dssp ----------CEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGG
T ss_pred cccccCCcchhhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHH
Confidence 455665 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCccc
Q 009431 92 SQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVV 171 (535)
Q Consensus 92 ~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~ 171 (535)
+||+++||||||+++||++||+++.+++++|+||+.|++||+.|++.++++|+++++| + .+++.|.++|+|+++||+.
T Consensus 87 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~-~~~~~l~~va~tsl~sKi~ 164 (545)
T 1a6d_A 87 AQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-S-TDDATLRKIALTALSGKNT 164 (545)
T ss_dssp CTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-C-CCHHHHHHHHHHHTTTSSC
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999 7 6899999999999999999
Q ss_pred chhhhhHHHHHHHHHHhccCCC-CCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeec
Q 009431 172 SQYSTLLAPLAVDSVLSVVDPC-KPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQI 250 (535)
Q Consensus 172 ~~~~~~ls~li~~a~~~v~~~~-~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L 250 (535)
++|+++|+++++||+.+++++. +...+|+++|+|++++|++++||++++|++|+++ +.+++||+.++||+|++++++|
T Consensus 165 ~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~-~~~~~m~~~ien~kIll~~~~L 243 (545)
T 1a6d_A 165 GLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKE-KVHSKMPDVVKNAKIALIDSAL 243 (545)
T ss_dssp CSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCC-CSCTTSCSEEEEEEEEEECSCB
T ss_pred cccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEecc-CCCCCCcceecCCEEEEEecCC
Confidence 9999999999999999998642 1135888999999999999999999999999665 6678899999999999999999
Q ss_pred CCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHH
Q 009431 251 SPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEI 330 (535)
Q Consensus 251 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L 330 (535)
++++++.++++.++++++++.++++|+++++++++++.+.|+||||++++| ++.++++|.++||++++++++++|
T Consensus 244 e~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~av~~~~k~~l 318 (545)
T 1a6d_A 244 EIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAKEGIYAVRRVKKSDM 318 (545)
T ss_dssp SCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB-----CHHHHHHHHHHTCEEECSCCHHHH
T ss_pred CcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCc-----cHHHHHHHHHCCeeEeccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 009431 331 EFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRC 410 (535)
Q Consensus 331 ~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 410 (535)
+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.+ ++.|||+|||+|+.+++|.||+++|||+++|+
T Consensus 319 e~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~ 397 (545)
T 1a6d_A 319 EKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN-PKAVSILIRGGTDHVVSEVERALNDAIRVVAI 397 (545)
T ss_dssp HHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESC-SSCEEEEECCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CceEEEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred HHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEE
Q 009431 411 LVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGIN 490 (535)
Q Consensus 411 ~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid 490 (535)
+++++++|||||++|++|+.+|++++++.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||
T Consensus 398 a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d 477 (545)
T 1a6d_A 398 TKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVD 477 (545)
T ss_dssp HHHHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEE
T ss_pred HHhCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCccee
Confidence 99998899999999999999999999888999999999999999999999999999999999999999998777789999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 491 VRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 491 ~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
..+|++.||++.|||||+.||+++|++|+|+|++|||||++|..
T Consensus 478 ~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~ 521 (545)
T 1a6d_A 478 LDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIAS 521 (545)
T ss_dssp TTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC--
T ss_pred cccCccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999975
No 12
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=3.2e-112 Score=919.50 Aligned_cols=522 Identities=31% Similarity=0.510 Sum_probs=492.1
Q ss_pred CCCCCCCCCCceEeeccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHH
Q 009431 5 AVVPSQPRSSKTESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAK 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ 84 (535)
.++|.+||.+ +.-.+++.+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+
T Consensus 3 ~~~~~~~~~~-~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Ak 81 (559)
T 3p9d_A 3 QLFNNSRSDT-LFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGK 81 (559)
T ss_dssp -----CCCCS-CCSSCEEEETHHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHH
T ss_pred ccccCCccch-hhccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHH
Confidence 3567777644 333459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHc-cceeCCCCCHHHHHHHHH
Q 009431 85 MLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSAS 163 (535)
Q Consensus 85 ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~-~~~~~~~~~~~~l~~va~ 163 (535)
|++++|++|++++||||||++|||++||+++.+++++|+||+.|++||+.|++.++++|++ +++|++..+++.|.++|+
T Consensus 82 ll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~~vA~ 161 (559)
T 3p9d_A 82 ILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAK 161 (559)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 999998656889999999
Q ss_pred HHhcCcccchhhhhHHHHHHHHHHhccC-C-CCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeee--
Q 009431 164 TSLNSKVVSQYSTLLAPLAVDSVLSVVD-P-CKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVE-- 239 (535)
Q Consensus 164 tsl~sk~~~~~~~~ls~li~~a~~~v~~-~-~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~-- 239 (535)
|+++||+.++|+++|++|++||+.++++ . .+.+.+|+++|+|++++|++++||++++|++|+++ +.+++||+.++
T Consensus 162 tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~-~~~~~m~~~ie~~ 240 (559)
T 3p9d_A 162 TSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCT-VASQAMPKRIAGG 240 (559)
T ss_dssp HTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCC-CSSTTSCSEECSS
T ss_pred HHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeec-ccCCCcceeeccC
Confidence 9999999999999999999999999984 1 11236888899999999999999999999999766 55788999999
Q ss_pred cceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCc
Q 009431 240 NAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKI 319 (535)
Q Consensus 240 n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I 319 (535)
||+|++++++|+++++++++++.++++++++.+.++|+++++++++++.+.|+||||++++| ++.+++||.++||
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I-----~~~al~~L~~~~I 315 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGI-----DDLCLKEFVEAKI 315 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCC-----CGGGTHHHHHTTC
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCC-----CHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred eeccCCCHHHHHHHHHHhCCeeeccc------cCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHH
Q 009431 320 MVVKDVERDEIEFITKTLNCLPIANI------DHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLV 393 (535)
Q Consensus 320 ~~v~~v~~~~L~~ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~ 393 (535)
++++++++.+|+|||++|||++++++ ++++++++|+|+.|++.++|+++|++|++|.. ++.|||+|||+|+.+
T Consensus 316 ~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrG~te~~ 394 (559)
T 3p9d_A 316 MGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSK-HSSSSIILRGANDYS 394 (559)
T ss_dssp EEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESS-SCCCCEEEEESCHHH
T ss_pred ceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCC-CCEEEEEEcCCCHHH
Confidence 99999999999999999999999998 78999999999999999999999999999988 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHH
Q 009431 394 LDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIV 473 (535)
Q Consensus 394 l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l 473 (535)
++|+||+++|||+++|++++++++|||||++|++|+.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++
T Consensus 395 l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv 474 (559)
T 3p9d_A 395 LDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELV 474 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999999999988999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC------------ceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 474 TELRNRHAQGEI------------NSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 474 ~~l~~~h~~~~~------------~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
.+|++.|.+++. ++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|++
T Consensus 475 ~~l~~~h~~~~~~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~ 547 (559)
T 3p9d_A 475 AKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITV 547 (559)
T ss_dssp HHHHHHHHTTSCCC----CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEEC
T ss_pred HHHHHHHhccccccccccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 999999976554 7999999999999999999999999999999999999999999999965
No 13
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3.5e-110 Score=898.10 Aligned_cols=506 Identities=39% Similarity=0.601 Sum_probs=486.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
++.+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++|||
T Consensus 4 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GDG 83 (515)
T 3iyg_E 4 SRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDG 83 (515)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCC--CCHHHHHHHHHHHhcCcccchhhhhH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVEL--SDRDSLVKSASTSLNSKVVSQYSTLL 178 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~--~~~~~l~~va~tsl~sk~~~~~~~~l 178 (535)
|||++|||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++. .|++.|.++|+|+++||+++.+.++|
T Consensus 84 TTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~~l 163 (515)
T 3iyg_E 84 TTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQM 163 (515)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999998854 35789999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCcccc
Q 009431 179 APLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIE 258 (535)
Q Consensus 179 s~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~ 258 (535)
+++++||+..+.+.. ...+|+++|+|++++|+++.||++++|++|+++ +.+++||+.++|++|++++|+|++.+++.+
T Consensus 164 ~~l~~dav~~V~~~~-~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~-~~~~~m~~~~~~~kIall~~~le~~k~~~~ 241 (515)
T 3iyg_E 164 AEIAVNAVLTVADMQ-RRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKD-FSHPQMPKQVEDAKIAILTCPFEPPKPKTK 241 (515)
T ss_pred HHHHHHHHHhhcccc-cCCCCcccEEEEEecCCCcccceEEeeEEEecc-cccccccccCCCceEEEEcCcccccccccc
Confidence 999999999987532 235788999999999999999999999999776 557889999999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431 259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338 (535)
Q Consensus 259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 338 (535)
+++.++++++++.+.+.|+++++++++++.+.|+||||++++| ++.++++|.++||++++++++.+|+|||++||
T Consensus 242 ~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I-----~~~al~~L~~~~I~~v~~v~k~~le~ia~~tG 316 (515)
T 3iyg_E 242 HKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGF-----DDEANHLLLQNDLPAVRWVGGPEIELIAIATG 316 (515)
T ss_pred ceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----CHHHHHHHHHCCCEEEeccCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CeeeccccCCCCCCceeeeEEEEEEecc--eEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009431 339 CLPIANIDHFRAEKLGHADLVEELSLGD--GKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRF 416 (535)
Q Consensus 339 a~ii~~~~~l~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 416 (535)
|++++++++++++++|+|+.|++.++|+ +++++|++|.. ++.|||+|||+|+.+++|.||+++|||+++|+++++++
T Consensus 317 a~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~-~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~ 395 (515)
T 3iyg_E 317 GRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNR 395 (515)
T ss_pred CEEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCC-CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999997 89999999988 88999999999999999999999999999999999988
Q ss_pred ccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCceeEEccCCc
Q 009431 417 LIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQ-GEINSGINVRKGQ 495 (535)
Q Consensus 417 vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~-~~~~~Gid~~~~~ 495 (535)
+|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.. ++.++|||..+|+
T Consensus 396 iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~ 475 (515)
T 3iyg_E 396 VVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKG 475 (515)
T ss_pred cCCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCc
Confidence 999999999999999999998889999999999999999999999999999999999999999975 4578999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 496 ITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 496 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
+.||++.|||||+.||+++|++|+|+|++|||||++|++
T Consensus 476 ~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 514 (515)
T 3iyg_E 476 TNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514 (515)
T ss_pred ccchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 999999999999999999999999999999999999976
No 14
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.2e-110 Score=898.31 Aligned_cols=503 Identities=29% Similarity=0.485 Sum_probs=485.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
+..+|.+++..||.||+.|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++|||
T Consensus 4 ~~~~~~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GDG 83 (517)
T 3iyg_Z 4 EVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDG 83 (517)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~ 180 (535)
|||+++||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++. +++.|.++|+|+++||+.+.+.++|++
T Consensus 84 TTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~~~~L~~va~tsl~sKi~~~~~d~la~ 162 (517)
T 3iyg_Z 84 TTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-DRETLIDVARTSLRTKVHAELADVLTE 162 (517)
T ss_pred ceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCC-CHHHHHHHHHHHhccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998875 788999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccce
Q 009431 181 LAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQS 260 (535)
Q Consensus 181 li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~ 260 (535)
+++||+..+.+.. ..+|+++|+|+|++||+..||++++|++|+++ +.+++||+.++||+|++++++|++++++.+++
T Consensus 163 l~vdaV~~V~~~~--~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~-~~~p~m~~~ien~kIll~~~~le~~k~e~~~~ 239 (517)
T 3iyg_Z 163 AVVDSILAIKKQD--EPIDLFMVEIMEMKHKSETDTSLIRGLVLDHG-ARHPDMKKRVEDAYILTCNVSLEYEKTEVNSG 239 (517)
T ss_pred HHHHHhheeccCC--CcCChhHheeeeecCCCccccceEeeEEEecc-CCCCCccccccCCeEEEeccccccccccccee
Confidence 9999999987532 36888999999999999999999999999766 55788999999999999999999999999999
Q ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------EEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHH
Q 009431 261 IVVSDYTQMDRILKEERNYILGMIKKIKATGCN---------VLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIE 331 (535)
Q Consensus 261 i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~---------lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~ 331 (535)
+.++++++++++++.|+++++..+++|...+++ |||++++| ++++++||.++||++++++++++|+
T Consensus 240 ~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I-----~d~al~~L~~~gI~~v~~v~~~~le 314 (517)
T 3iyg_Z 240 FFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGI-----DPFSLDALAKEGIIALRRAKRRNME 314 (517)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccC-----CHHHHHHHHHCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988877 48889999 9999999999999999999999999
Q ss_pred HHHHHhCCeeeccccCCCCCC-ceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 009431 332 FITKTLNCLPIANIDHFRAEK-LGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRC 410 (535)
Q Consensus 332 ~ia~~tGa~ii~~~~~l~~~~-lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 410 (535)
|||++|||+++++++++++++ +|+|+ |++.++|+++|++|++|+. ++.|||+|||+|+.+++|.||+++|||+++|+
T Consensus 315 ria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~ 392 (517)
T 3iyg_Z 315 RLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNN-PRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKN 392 (517)
T ss_pred HHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCC-chhheeeecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999 9999999999999999988 88999999999999999999999999999999
Q ss_pred HHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEE
Q 009431 411 LVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGIN 490 (535)
Q Consensus 411 ~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid 490 (535)
+++++++|||||++|++++.+|++++.+.++++|+++++|++||+.+|++|++|||+|+.+++.+|++.|..++.++|||
T Consensus 393 av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d 472 (517)
T 3iyg_Z 393 AIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVD 472 (517)
T ss_pred HHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEe
Confidence 99998899999999999999999999888999999999999999999999999999999999999999998777899999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 491 VRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 491 ~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
+.+|++.||++.|||||+.||+++|+.|+|+|+||||||+||.+
T Consensus 473 ~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 516 (517)
T 3iyg_Z 473 LNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA 516 (517)
T ss_pred CCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999986
No 15
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=7.5e-112 Score=915.01 Aligned_cols=511 Identities=31% Similarity=0.515 Sum_probs=485.5
Q ss_pred CceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHH
Q 009431 14 SKTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELS 90 (535)
Q Consensus 14 ~~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~ 90 (535)
.|+.+++ ++.+|.+++..||.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|
T Consensus 8 ~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a 87 (550)
T 3p9d_G 8 PTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDIS 87 (550)
T ss_dssp --------CCCEEESHHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHHHHH
T ss_pred cchhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHH
Confidence 3777886 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCC---HHHHHHHHHHHhc
Q 009431 91 KSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD---RDSLVKSASTSLN 167 (535)
Q Consensus 91 ~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~---~~~l~~va~tsl~ 167 (535)
++||+++||||||++|||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++..| ++.|.++|+|+++
T Consensus 88 ~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~L~~vA~tsl~ 167 (550)
T 3p9d_G 88 RAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMS 167 (550)
T ss_dssp HHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC------CHHHHHHHHHH
T ss_pred HHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999987555 7889999999999
Q ss_pred CcccchhhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCC--CCceeeecceEEE
Q 009431 168 SKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAA--GGPTRVENAKIAV 245 (535)
Q Consensus 168 sk~~~~~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~--~~~~~~~n~~Ill 245 (535)
||+++.|+++|+++++||+.++++. .+|+++|+|++++|++++||++++|++|++++.+++ .||+.++||+|++
T Consensus 168 sK~~~~~~~~i~~livdAv~~V~~~----~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll 243 (550)
T 3p9d_G 168 SKLIHNNADFFVKMCVDAVLSLDRN----DLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILS 243 (550)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHCCSS----SCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEE
T ss_pred CccccccHhHHHHHHHHHHHHhCcc----ccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEEE
Confidence 9999999999999999999999842 588899999999999999999999999987755442 6899999999999
Q ss_pred EeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCC
Q 009431 246 IQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDV 325 (535)
Q Consensus 246 ~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v 325 (535)
++++|++++++.++++.++++++++.+++.|++++++++++|++.|++||+++++| ++++++||+++||++++++
T Consensus 244 ~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I-----~dla~~~L~~~gI~~v~~v 318 (550)
T 3p9d_G 244 LNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPI-----GDLATQFFADRNIFCAGRV 318 (550)
T ss_dssp ECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCC-----CHHHHHTTGGGTCEEEECC
T ss_pred eccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCc-----cHHHHHHHHHcCCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 009431 326 ERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDAL 405 (535)
Q Consensus 326 ~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal 405 (535)
++++|+|||++|||++++++++++++.+|+|+.|++.++|+++|++|++|+. ++.|||+|||+|+.+++|+||+++|||
T Consensus 319 ~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~-~~~~tI~lrG~te~~l~E~kr~l~DAl 397 (550)
T 3p9d_G 319 SADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQ-AKTCTLLLRGGAEQVIAEVERSLHDAI 397 (550)
T ss_dssp CTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTT-CCCCCCCBCSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCC-CceeEEEEeCCcHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred HHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCC
Q 009431 406 CVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEI 485 (535)
Q Consensus 406 ~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~ 485 (535)
+++|++++++++|||||++|++++.+|++++++.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.
T Consensus 398 ~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~ 477 (550)
T 3p9d_G 398 MIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEK 477 (550)
T ss_dssp HHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Confidence 99999999988999999999999999999999899999999999999999999999999999999999999999977778
Q ss_pred ceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 486 NSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 486 ~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+
T Consensus 478 ~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~ 526 (550)
T 3p9d_G 478 WYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITN 526 (550)
T ss_dssp CCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECC
T ss_pred ceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhC
Confidence 8999999999999999999999999999999999999999999999975
No 16
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.8e-109 Score=891.92 Aligned_cols=504 Identities=31% Similarity=0.497 Sum_probs=482.2
Q ss_pred cccch-HHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCC
Q 009431 21 DNKRK-EDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGD 99 (535)
Q Consensus 21 ~~~~~-~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 99 (535)
++.+| .+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 4 ~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~~GD 83 (512)
T 3iyg_Q 4 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGD 83 (512)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 46788 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccce--eCCCCCHHHHHHHHHHHhcCcccchhhhh
Q 009431 100 GTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAV--PVELSDRDSLVKSASTSLNSKVVSQYSTL 177 (535)
Q Consensus 100 Gttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~--~~~~~~~~~l~~va~tsl~sk~~~~~~~~ 177 (535)
||||++|||++||+++.+++++|+||+.|++||+.|++.++++|+++++ +.+..+++.|.++|+|+++||+.+ ++++
T Consensus 84 GTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~~~l~~va~tsl~sK~~~-~~~~ 162 (512)
T 3iyg_Q 84 GTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYG-NEVF 162 (512)
T ss_pred ChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCcc-chHH
Confidence 9999999999999999999999999999999999999999999999854 344458999999999999999876 6889
Q ss_pred HHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccc
Q 009431 178 LAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDI 257 (535)
Q Consensus 178 ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~ 257 (535)
|+++++||+.+++++. +.+|+++|+|.|.+|+++.||++++|++|++++. + ||+.++|++|++++++|++.+++.
T Consensus 163 i~~livdAv~~V~~~~--~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~-~--~~~~~~n~kI~ll~~~le~~~~e~ 237 (512)
T 3iyg_Q 163 LAKLIAQACVSIFPDS--GHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETE-G--DVTSVKDAKIAVYSCPFDGMITET 237 (512)
T ss_pred HHHHHHHHHHHHhccC--CcccHhHeeEeeccCCCcccceEEeeEEEecCcC-C--CCcccccCceEEEecccccccccc
Confidence 9999999999998642 2688899999999999999999999999987743 3 899999999999999999999999
Q ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHh
Q 009431 258 EQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTL 337 (535)
Q Consensus 258 ~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~t 337 (535)
++++.+++++++..+.+.|+++++++++++.+.|+||||++++| ++++++||+++||++++++++.+|+|||++|
T Consensus 238 k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I-----~~la~~~l~k~~I~av~~~~~~dle~ia~~t 312 (512)
T 3iyg_Q 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRV-----ADMALHYANKYNIMLVRLNSKWDLRRLCKTV 312 (512)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCc-----cHHHHHHHHHCCeEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 009431 338 NCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFL 417 (535)
Q Consensus 338 Ga~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~v 417 (535)
||++++++++++++++|+|+.|++.++|++++++|++|+.+++.|||+|||+|+.+++|.||+++|||+++|++++++++
T Consensus 313 Ga~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~i 392 (512)
T 3iyg_Q 313 GATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRL 392 (512)
T ss_pred CCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999755789999999999999999999999999999999999889
Q ss_pred cccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCC--c
Q 009431 418 IAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKG--Q 495 (535)
Q Consensus 418 vpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~--~ 495 (535)
|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||..+| +
T Consensus 393 VpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~ 472 (512)
T 3iyg_Q 393 VPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPA 472 (512)
T ss_pred ecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCc
Confidence 99999999999999999998899999999999999999999999999999999999999999988888999999965 9
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 496 ITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 496 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
+.||++.|||||+.||+++|++|+|+|+||||||+||++|
T Consensus 473 ~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~k 512 (512)
T 3iyg_Q 473 VKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 512 (512)
T ss_pred ccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHheecC
Confidence 9999999999999999999999999999999999999875
No 17
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=7.2e-111 Score=908.83 Aligned_cols=514 Identities=31% Similarity=0.523 Sum_probs=485.5
Q ss_pred CceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHH
Q 009431 14 SKTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELS 90 (535)
Q Consensus 14 ~~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~ 90 (535)
.|+.+++ ++.+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|
T Consensus 3 ~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~a 82 (590)
T 3p9d_C 3 APVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELS 82 (590)
T ss_dssp ---CCSCTTCCBCTTHHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHHT
T ss_pred CCeEeecCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHHH
Confidence 3777776 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCchhHHHHHHHHHHHHHHHH-HhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCc
Q 009431 91 KSQDAAAGDGTTTVVVIAGALLKQCLIL-LSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSK 169 (535)
Q Consensus 91 ~~~~~~~GDGttt~vlLa~~Ll~~~~~l-i~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk 169 (535)
++||+++||||||++|||++||+++.++ +++|+||+.|++||+.|++.++++|+++++|++..+++.|.++|+|+++||
T Consensus 83 ~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~L~~vA~tslsSK 162 (590)
T 3p9d_C 83 RTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTK 162 (590)
T ss_dssp TTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCCTHHHHHHHTTTSTTS
T ss_pred HhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999 999999999999999999999999999999998767899999999999999
Q ss_pred ccchhhhhHHHHHHHHHHhccCCCCC-------CCccc-ccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecc
Q 009431 170 VVSQYSTLLAPLAVDSVLSVVDPCKP-------DLVDL-RDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENA 241 (535)
Q Consensus 170 ~~~~~~~~ls~li~~a~~~v~~~~~~-------~~~~~-~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~ 241 (535)
+.++|+++|+++++||+.+++++... ..+|+ ++|+|++++|+++.||++++|++|+++ +.++.||+.++||
T Consensus 163 ~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~-~~~~~m~~~~en~ 241 (590)
T 3p9d_C 163 YVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKD-VVHPKMSRHIENP 241 (590)
T ss_dssp TTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCC-CSCTTSCSCEESC
T ss_pred cccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecc-cCCCCCcceeeee
Confidence 99999999999999999999864311 13455 379999999999999999999999665 7788999999999
Q ss_pred eEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCcee
Q 009431 242 KIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMV 321 (535)
Q Consensus 242 ~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 321 (535)
+|++++++|++++++.++++.++++++++.+++.|+++++++++++.+.|++|||++++| ++++++||.++||++
T Consensus 242 kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I-----~d~Al~~L~k~~I~a 316 (590)
T 3p9d_C 242 RVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGV-----SDLAQHYLLKGGCSV 316 (590)
T ss_dssp CEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCC-----CTHHHHHHHHTTCCC
T ss_pred EEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCc-----CHHHHHHHHhcccee
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCHHHHHHHHHHhCCeeeccccCCCCCCcee-eeEEEEEEecceEEEEEecccCCCce-------------------
Q 009431 322 VKDVERDEIEFITKTLNCLPIANIDHFRAEKLGH-ADLVEELSLGDGKIVKITGIKDMGRT------------------- 381 (535)
Q Consensus 322 v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~------------------- 381 (535)
++++++.+|+|||++|||+++++++++++++||+ |+.|++.++|++++++|++|.+ +..
T Consensus 317 v~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~-~~~~~~~~~~~~~~~~~k~~~~ 395 (590)
T 3p9d_C 317 LRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKE-PGSGSGWSHPQFEKGSGKRRWK 395 (590)
T ss_dssp CCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC--------------------------
T ss_pred eccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCC-ccccccccccccccccchhhhh
Confidence 9999999999999999999999999999999999 9999999999999999999865 444
Q ss_pred -------------------------------------EEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChh
Q 009431 382 -------------------------------------TTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAP 424 (535)
Q Consensus 382 -------------------------------------~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~ 424 (535)
+||+|||+|+.+++|.||+++|||+++|++++++++|||||++
T Consensus 396 ~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~ 475 (590)
T 3p9d_C 396 KNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGAT 475 (590)
T ss_dssp --------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHH
T ss_pred cchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHH
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCc
Q 009431 425 EIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENV 504 (535)
Q Consensus 425 E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI 504 (535)
|++++.+|++++++.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.||
T Consensus 476 e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI 555 (590)
T 3p9d_C 476 EMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGI 555 (590)
T ss_dssp HHHHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTC
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCC
Confidence 99999999999988999999999999999999999999999999999999999999877888999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 505 VQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 505 ~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
|||+.||+++|++|+|+|+||||||++|.+
T Consensus 556 ~dp~~vk~~al~~A~e~a~~iL~id~ii~~ 585 (590)
T 3p9d_C 556 WEPEVIKQQSVKTAIESACLLLRVDDIVSG 585 (590)
T ss_dssp CEEHHHHHHHHHHHHHHHHHTTSEEEEECC
T ss_pred eEcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999975
No 18
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=8.1e-110 Score=901.29 Aligned_cols=514 Identities=36% Similarity=0.564 Sum_probs=485.9
Q ss_pred CceEeec-----cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHH
Q 009431 14 SKTESYV-----DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVE 88 (535)
Q Consensus 14 ~~~~~~~-----~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~ 88 (535)
.|+.+++ ++.+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++
T Consensus 27 ~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e 106 (562)
T 3p9d_E 27 RPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQ 106 (562)
T ss_dssp ---CCCSSBCCCSCSHHHHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHH
T ss_pred CCeEEeccCCcceecchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHH
Confidence 3556665 44689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCC----HHHHHHHHHH
Q 009431 89 LSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD----RDSLVKSAST 164 (535)
Q Consensus 89 ~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~----~~~l~~va~t 164 (535)
+|++||+++||||||++|||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++..+ ++.|.++|+|
T Consensus 107 ~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~t 186 (562)
T 3p9d_E 107 LSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKT 186 (562)
T ss_dssp HHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887532 2789999999
Q ss_pred HhcCcccchhhhhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceee------
Q 009431 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRV------ 238 (535)
Q Consensus 165 sl~sk~~~~~~~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~------ 238 (535)
+++||+++++.++|+++++||+..+.+.. .+.+|+++|+|++++|++++||++++|++|+++ +.+++|++..
T Consensus 187 Sl~sK~i~~~~d~la~l~vdAV~~V~~~~-~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~-~~sp~m~~~~~~~~~~ 264 (562)
T 3p9d_E 187 SLGSKIVSKDHDRFAEMAVEAVINVMDKD-RKDVDFDLIKMQGRVGGSISDSKLINGVILDKD-FSHPQMPKCVLPKEGS 264 (562)
T ss_dssp HHSSSTTTTTHHHHHHHHHHHHHTSSTTT-CSCCCCCCCEEEEESSSCGGGCEEESSEEESSC-CCTTSCCC-----TTC
T ss_pred hcCCchhHHHHHHHHHHHHHHheeecccc-cCCCCcccEEEEEecCCChhhhceeeeEEEecC-CCCCCcCccccccccc
Confidence 99999999999999999999999987632 236888999999999999999999999999766 5578899998
Q ss_pred ecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcC
Q 009431 239 ENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSK 318 (535)
Q Consensus 239 ~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~ 318 (535)
+|++|++++++|++.+++.++++.++++++++++.+.|+++++++++++.+.|+||||++++| ++.++++|.++|
T Consensus 265 ~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I-----~~~Al~~L~~~~ 339 (562)
T 3p9d_E 265 DGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGF-----DDEANHLLLQND 339 (562)
T ss_dssp SSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSC-----CSHHHHHHHTTT
T ss_pred ccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCC-----CHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ceeccCCCHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecc--eEEEEEecccCCCceEEEEecCCCHHHHHH
Q 009431 319 IMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGD--GKIVKITGIKDMGRTTTVLVRGSNQLVLDE 396 (535)
Q Consensus 319 I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~~TIll~G~t~~~l~e 396 (535)
|++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+ +++++|++|+. ++.|||+|||+|+.+++|
T Consensus 340 I~~v~~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~-~~~~TIllrG~te~~l~E 418 (562)
T 3p9d_E 340 LPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKE-TKTVTCFVRGSNKMIVDE 418 (562)
T ss_dssp CCCEECCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSC-CSCCEEEEECTTTTTHHH
T ss_pred CEEEeccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCC-CCeEEEEEeCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999985 89999999988 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHH
Q 009431 397 AERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTEL 476 (535)
Q Consensus 397 ~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l 476 (535)
.||+++|||+++|++++++++|||||++|++|+.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|
T Consensus 419 ~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l 498 (562)
T 3p9d_E 419 AERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTL 498 (562)
T ss_dssp HTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999988999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHhhc-CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 477 RNRHAQ-GEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 477 ~~~h~~-~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
++.|.. ++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|++.
T Consensus 499 ~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 558 (562)
T 3p9d_E 499 KSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISG 558 (562)
T ss_dssp HHHHHHTTTSSBCCBTTTTBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECC
T ss_pred HHHHhhcCCCceeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999965 45789999999999999999999999999999999999999999999999763
No 19
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=1e-110 Score=909.39 Aligned_cols=511 Identities=27% Similarity=0.470 Sum_probs=474.9
Q ss_pred eEeec---cccch-HHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHh
Q 009431 16 TESYV---DNKRK-EDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSK 91 (535)
Q Consensus 16 ~~~~~---~~~~~-~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 91 (535)
..+++ ++.+| .+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 11 ~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a~ 90 (568)
T 3p9d_H 11 AGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATE 90 (568)
T ss_dssp CSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHH
Confidence 44565 66677 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeC--CCCCHHHHHHHHHHHhcCc
Q 009431 92 SQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPV--ELSDRDSLVKSASTSLNSK 169 (535)
Q Consensus 92 ~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~--~~~~~~~l~~va~tsl~sk 169 (535)
+|++++||||||++|||++||+++.+++++|+||..|++||+.|++.++++|+++++++ +..+++.|.++|+|+++||
T Consensus 91 ~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~~~~~~l~~va~tsl~sK 170 (568)
T 3p9d_H 91 QQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSK 170 (568)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCCCTTHHHHHHHHHHHTTT
T ss_pred hhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999876 4457899999999999999
Q ss_pred ccchhhhhHHHHHHHHHHhccCC----CCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeee---cce
Q 009431 170 VVSQYSTLLAPLAVDSVLSVVDP----CKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVE---NAK 242 (535)
Q Consensus 170 ~~~~~~~~ls~li~~a~~~v~~~----~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~---n~~ 242 (535)
+.+++ ++|+++++||+.++++. .+...||+++|+|++++|++++||++++|++|+++ + .+|++.++ |||
T Consensus 171 ~~~~~-~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~-~--~~m~~~i~~~~n~k 246 (568)
T 3p9d_H 171 KYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNRE-P--EGHVKSLSEDKKHK 246 (568)
T ss_dssp STTCH-HHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSC-B--SSGGGSCCCCSSCE
T ss_pred CcchH-HHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeec-c--cCCcEEEecCCcce
Confidence 99988 99999999999999874 22236888999999999999999999999999654 3 37899999 999
Q ss_pred EEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceec
Q 009431 243 IAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVV 322 (535)
Q Consensus 243 Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 322 (535)
|++++|+|+++++++++++.++++++++.+.++|++++++++++|.+.|+||||++++| ++++++||.++||+++
T Consensus 247 Illl~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I-----~~~al~~L~~~gI~av 321 (568)
T 3p9d_H 247 VAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGV-----GELALHYLNRYGILVL 321 (568)
T ss_dssp EEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCC-----CHHHHHHHHHHTCEEE
T ss_pred EEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCc-----ChHHHHHHHHCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccC-CCceEEEEecCCCHHHHHHHHHHH
Q 009431 323 KDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD-MGRTTTVLVRGSNQLVLDEAERSL 401 (535)
Q Consensus 323 ~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~~TIll~G~t~~~l~e~~~~i 401 (535)
+++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. .++.|||+|||+|+.+++|.||++
T Consensus 322 ~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~er~i 401 (568)
T 3p9d_H 322 KVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAI 401 (568)
T ss_dssp CCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999972 389999999999999999999999
Q ss_pred HHHHHHHHHHHh--cCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 009431 402 HDALCVVRCLVS--KRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNR 479 (535)
Q Consensus 402 ~dal~~~~~~~~--~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~ 479 (535)
+|||+++|++++ ++++|||||++|++|+.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.
T Consensus 402 ~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~ 481 (568)
T 3p9d_H 402 DDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAA 481 (568)
T ss_dssp HHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhc--------CCCceeEEccCCc---ccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 480 HAQ--------GEINSGINVRKGQ---ITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 480 h~~--------~~~~~Gid~~~~~---~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
|.. ++.++|||+.+|+ +.||++.|||||+.||+++|+.|+|+|++|||||++|.++
T Consensus 482 h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 548 (568)
T 3p9d_H 482 HNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAK 548 (568)
T ss_dssp CCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC----------
T ss_pred hhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 865 5678999999997 9999999999999999999999999999999999999763
No 20
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=2.8e-109 Score=896.10 Aligned_cols=507 Identities=28% Similarity=0.455 Sum_probs=482.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCc
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDG 100 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 100 (535)
++.+|.+++..||.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|||
T Consensus 11 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~e~GDG 90 (546)
T 3p9d_F 11 ESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDG 90 (546)
T ss_dssp EEEEHHHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHHHHHCSSC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCC--CCHHHHHHHHHHHhcCcccchhhhhH
Q 009431 101 TTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVEL--SDRDSLVKSASTSLNSKVVSQYSTLL 178 (535)
Q Consensus 101 ttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~--~~~~~l~~va~tsl~sk~~~~~~~~l 178 (535)
|||++|||++||+++.+++++|+||+.|++||+.|++.++++|++++++++. .+++.|.++|+|+++||+.+.+.++|
T Consensus 91 TTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~~d~l 170 (546)
T 3p9d_F 91 TTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVL 170 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHHHHCSSH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcchhHHHHH
Confidence 9999999999999999999999999999999999999999999999998853 47889999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCcccc
Q 009431 179 APLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIE 258 (535)
Q Consensus 179 s~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~ 258 (535)
+++++||+..+.+.. ...+|+++|+|++++|++..||++++|++|+++ +.++.||+.++||+|++++|+|++++++++
T Consensus 171 a~l~vdaV~~V~~~~-~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~-~~~~~m~~~~en~kIll~~~~Le~~k~e~~ 248 (546)
T 3p9d_F 171 TPIVTDAVLSVYDAQ-ADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHG-GRHPDMPTRVKNAYVLILNVSLEYEKTEVN 248 (546)
T ss_dssp HHHHHHHHHHTHHHH-HTTCCGGGEEEECCCCSCTTTCCCCSSCEESCC-CCSSSSCSSBCSCCCCEECCCSSSCCCSSC
T ss_pred HHHHHHhheEeecCC-CCcccchheEEEEecCCCccccEEEeeEEEecc-cccccCcceecCceEEEecCcccccccccC
Confidence 999999999987421 125788999999999999999999999999766 557889999999999999999999999999
Q ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcC---------C-cEEEEcCCccccccchHHHHHHHhcCceeccCCCHH
Q 009431 259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATG---------C-NVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERD 328 (535)
Q Consensus 259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~---------~-~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~ 328 (535)
+++.++++++++.+++.|++++++.++.|...+ + +|||++++| ++++++||.++||+++++++++
T Consensus 249 ~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I-----~~~Al~~L~~~gI~~vr~v~~~ 323 (546)
T 3p9d_F 249 SGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGI-----DPMSLDVFAKHNILALRRAKRR 323 (546)
T ss_dssp BCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCC-----CHHHHHHHTTTTCEEECCCCHH
T ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcC-----cHHHHHHHHHCCCeeEecCCHH
Confidence 999999999999999999999999999998754 3 389999999 9999999999999999999999
Q ss_pred HHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009431 329 EIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVV 408 (535)
Q Consensus 329 ~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 408 (535)
+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|++ ++.|||+|||+|+.+++|+||+++|||+++
T Consensus 324 ~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~tI~lrG~te~~l~E~kr~l~DAl~~~ 402 (546)
T 3p9d_F 324 NMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTD-PKSCTILIKGSTHYALAQTKDAVRDGLRAV 402 (546)
T ss_dssp HHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSC-CSCEEEECCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCC-CceEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 899999999999999999999999999999
Q ss_pred HHHHhcCcccccCChhHHHHHHHHHH---HHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhc---
Q 009431 409 RCLVSKRFLIAGGGAPEIELSRQLGA---WAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQ--- 482 (535)
Q Consensus 409 ~~~~~~~~vvpGGG~~E~~ls~~L~~---~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~--- 482 (535)
|++++++++|||||++|++++.+|++ ++++.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 403 r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~ 482 (546)
T 3p9d_F 403 ANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQD 482 (546)
T ss_dssp HHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTT
T ss_pred HHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhc
Confidence 99999988999999999999999999 578889999999999999999999999999999999999999998873
Q ss_pred --CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431 483 --GEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535 (535)
Q Consensus 483 --~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 535 (535)
++.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||+||+++
T Consensus 483 ~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~ 537 (546)
T 3p9d_F 483 SDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAG 537 (546)
T ss_dssp STTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred ccCCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45689999999999999999999999999999999999999999999999863
No 21
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=3.5e-109 Score=892.65 Aligned_cols=501 Identities=33% Similarity=0.527 Sum_probs=480.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeec-CCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCC
Q 009431 21 DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMIST-ASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGD 99 (535)
Q Consensus 21 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~-~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 99 (535)
++.+|.+++..|+.||..|+++|++||||+||+|||++ +.|+++|||||+|||++|+++||+|+|++++|++||+++||
T Consensus 11 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~qd~~~GD 90 (527)
T 3p9d_B 11 TEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGD 90 (527)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCS
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHHhHhhhCC
Confidence 78899999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhC-CCChhhHHHHHHHHHHHHHHHHHccceeCCCCC---HHHHHHHHHHHhcCcccchhh
Q 009431 100 GTTTVVVIAGALLKQCLILLSS-GIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD---RDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 100 Gttt~vlLa~~Ll~~~~~li~~-g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~---~~~l~~va~tsl~sk~~~~~~ 175 (535)
||||++|||++||+++.+++++ |+||+.|++||+.|++.++++|++++++++..+ ++.|.++|+||++||+.++|+
T Consensus 91 GTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~sK~~~~~~ 170 (527)
T 3p9d_B 91 GTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDK 170 (527)
T ss_dssp CTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHTTSGGGGGH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhccccCcccchH
Confidence 9999999999999999999999 999999999999999999999999999887422 789999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCc
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKT 255 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~ 255 (535)
++|+++++||+.+++++. |++.|+|+++.|+++.||++++|++|++++. ++. |+.++||+|++++++|+++++
T Consensus 171 ~~i~~li~dAv~~V~~~~-----~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~-~~~-p~~~~n~kIlll~~~le~~k~ 243 (527)
T 3p9d_B 171 DHFAELATNAILRLKGST-----NLEHIQIIKILGGKLSDSFLDEGFILAKKFG-NNQ-PKRIENAKILIANTTLDTDKV 243 (527)
T ss_dssp HHHHHHHHHHHHTTCTTC-----CTTSSCCCBCCCSSSSCCCEESSCCCSCCCS-SSC-CSCCSSCEEEEECSCSSCCCC
T ss_pred HHHHHHHHHHHHHhcccC-----CcceEEEEEcCCCCccccEEEEeEEEecccC-CCC-CeeeecceEEEeccccccccc
Confidence 999999999999998642 5678999999999999999999999987755 444 888999999999999999999
Q ss_pred c-ccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHH
Q 009431 256 D-IEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFIT 334 (535)
Q Consensus 256 ~-~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia 334 (535)
+ +++++.+++++++.++.+.|++++++++++|.+.|++|||++++| +++++++|.++||++++++++.+|+|+|
T Consensus 244 ~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I-----~~~al~~L~~~~i~av~~~~~~dle~ia 318 (527)
T 3p9d_B 244 KIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLI-----YDYPEQLFTDLGINSIEHADFEGVERLA 318 (527)
T ss_dssp SSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCC-----TTTHHHHHHHTCBCCCCCCHHHHHHHHH
T ss_pred cccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 9 599999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 009431 335 KTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSK 414 (535)
Q Consensus 335 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 414 (535)
++|||++++++++++++.+|+|+.|++.++|+++|++|++|+. +++|||+|||+|+.+++|+||+++|||+++|+++++
T Consensus 319 ~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~ 397 (527)
T 3p9d_B 319 LVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKA-GEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKE 397 (527)
T ss_dssp HHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCC-SCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHC
T ss_pred HHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCC-CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred CcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCC
Q 009431 415 RFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKG 494 (535)
Q Consensus 415 ~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~ 494 (535)
+++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|||+.+|
T Consensus 398 g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g 477 (527)
T 3p9d_B 398 TRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNG 477 (527)
T ss_dssp CCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSST
T ss_pred CCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCC
Confidence 88999999999999999999998889999999999999999999999999999999999999999987778899999999
Q ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431 495 QITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534 (535)
Q Consensus 495 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 534 (535)
++.||++.|||||+.||+++|++|+|+|++|||||++|.+
T Consensus 478 ~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~ 517 (527)
T 3p9d_B 478 TIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRA 517 (527)
T ss_dssp TCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred CCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999999999999999999999975
No 22
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=1.8e-102 Score=834.60 Aligned_cols=473 Identities=39% Similarity=0.646 Sum_probs=385.4
Q ss_pred eeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHH
Q 009431 55 MISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHK 134 (535)
Q Consensus 55 ~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~ 134 (535)
||+++.|+++|||||+||||+|+++||+|+|++++|++||+++||||||+++||++||+++.+++++|+||+.|++||+.
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHHHHHHHHHhccCCC-CCCCcc-cccEEEEEcCCCC
Q 009431 135 AAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPC-KPDLVD-LRDIRIVKKLGGT 212 (535)
Q Consensus 135 a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~li~~a~~~v~~~~-~~~~~~-~~~I~i~k~~G~~ 212 (535)
|++.++++|+++++|++..|++.|.++|+|+++||+.++|+++|+++++||+.+++++. +..++| +++|+|++++|++
T Consensus 81 A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~ 160 (500)
T 3aq1_B 81 AAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGS 160 (500)
T ss_dssp HHHHHHHHHHHHCEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSC
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCCC
Confidence 99999999999999998667999999999999999999999999999999999998542 222577 6899999999999
Q ss_pred cceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009431 213 VDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGC 292 (535)
Q Consensus 213 ~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~ 292 (535)
++||++++|++|+++ +.+++||+.++||+|++++++|++++++.++++.++++++++.++++|+++++++++++.+.|+
T Consensus 161 ~~ds~lv~G~v~dk~-~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~ 239 (500)
T 3aq1_B 161 IDDSELIDGLVIDKE-RSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGA 239 (500)
T ss_dssp GGGCEEESEEEESCC-CSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCC
T ss_pred ccceEEEeeeEEeec-CCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999765 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEE
Q 009431 293 NVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKI 372 (535)
Q Consensus 293 ~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~ 372 (535)
||||++++| ++.+++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|
T Consensus 240 ~lvi~~~~I-----~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~ 314 (500)
T 3aq1_B 240 NVVFCQKGI-----DDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYV 314 (500)
T ss_dssp SEEEESSCB-----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEE
T ss_pred CEEEECCCc-----CHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEE
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 009431 373 TGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAE 452 (535)
Q Consensus 373 ~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~ 452 (535)
++|++ ++.|||+|||+|+.+++|.||+++|||+++|++++++++|||||++|++++.+|++++.+.++++|+++++|++
T Consensus 315 ~g~~~-~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ 393 (500)
T 3aq1_B 315 TGCQN-SKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAE 393 (500)
T ss_dssp EEETT-CCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred ECCCC-CceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHH
Confidence 99988 89999999999999999999999999999999999988999999999999999999998899999999999999
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhh
Q 009431 453 ALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 532 (535)
Q Consensus 453 AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii 532 (535)
||+.||++|++|||+|+.+++.+|++.|..+..++|||..+|++.||++.|||||+.||+++|++|+|+|++|||||++|
T Consensus 394 ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI 473 (500)
T 3aq1_B 394 ALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVV 473 (500)
T ss_dssp HTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998777789999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009431 533 TV 534 (535)
Q Consensus 533 ~~ 534 (535)
..
T Consensus 474 ~~ 475 (500)
T 3aq1_B 474 AS 475 (500)
T ss_dssp --
T ss_pred hc
Confidence 75
No 23
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=2.9e-95 Score=782.74 Aligned_cols=461 Identities=25% Similarity=0.360 Sum_probs=425.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhccc
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDA 95 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~ 95 (535)
|+..+|.+++..|++||..|+++|++||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|+++++++||+
T Consensus 3 k~~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 82 (543)
T 1we3_A 3 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTND 82 (543)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhhe
Confidence 46789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhh
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (535)
++||||||+++||++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +++.|.++++++++ +
T Consensus 83 e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~~~l~~vA~iS~~-------~ 153 (543)
T 1we3_A 83 VAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE--DRKAIEEVATISAN-------D 153 (543)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCC--SHHHHHHHHHHHHT-------C
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHhhhhhcC-------C
Confidence 99999999999999999999999999999999999999999999999999999987 78999999999886 4
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCccee-eeEeeEEEecCCCCCC------CCceeeecceEEEEee
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDT-ELVKGLVFDKKASHAA------GGPTRVENAKIAVIQF 248 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~ 248 (535)
++++++++||+.+++++ +.|+|+ .|+++++| ++++|++|++++.+++ .|++.++||+|+++|+
T Consensus 154 ~~i~~li~dAv~~V~~~--------g~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~ 223 (543)
T 1we3_A 154 PEVGKLIADAMEKVGKE--------GIITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEK 223 (543)
T ss_dssp HHHHHHHHHHHHTTCTT--------SEEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHhCcC--------CcEEEe--cCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECC
Confidence 78999999999999753 458886 79999998 9999999988765542 3788899999999999
Q ss_pred ecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhc------Cc---
Q 009431 249 QISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKS------KI--- 319 (535)
Q Consensus 249 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~------~I--- 319 (535)
+++ +. +.+.++++++.+.|+||||++++| ++.++++|..+ +|
T Consensus 224 ~Is-------------~~-----------~~l~~~le~i~~~g~~lvii~~~I-----~~~Al~~L~~n~irg~~~v~aV 274 (543)
T 1we3_A 224 KVS-------------NV-----------RELLPILEQVAQTGKPLLIIAEDV-----EGEALATLVVNKLRGTLSVAAV 274 (543)
T ss_dssp CBC-------------CH-----------HHHHHHHHHHHTTTCCEEEEESCB-----CHHHHHHHHHHHHHTSCCEEEE
T ss_pred CcC-------------CH-----------HHHHHHHHHHHhcCCCEEEEcCCc-----cHHHHHHHHHhccccceeEEEE
Confidence 755 33 335688999999999999999999 77777777764 44
Q ss_pred --eeccCCCHHHHHHHHHHhCCeeecc-----ccCCCCCCceeeeEEEEEEecceEEEEEecccC---------------
Q 009431 320 --MVVKDVERDEIEFITKTLNCLPIAN-----IDHFRAEKLGHADLVEELSLGDGKIVKITGIKD--------------- 377 (535)
Q Consensus 320 --~~v~~v~~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~--------------- 377 (535)
++++++++++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|.+
T Consensus 275 k~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~ 351 (543)
T 1we3_A 275 KAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKKEDIEARINGIKKEL 351 (543)
T ss_dssp ECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred eccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 5556999999999999999999996 89999999999999976 4789999998864
Q ss_pred -------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhh
Q 009431 378 -------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438 (535)
Q Consensus 378 -------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~ 438 (535)
++++|||+|||+|+.+++|.||+++|||+++|++++++ +|||||++|++++.+|++++.+
T Consensus 352 ~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~ 430 (543)
T 1we3_A 352 ETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKK 430 (543)
T ss_dssp TTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTT
T ss_pred hccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhc
Confidence 24799999999999999999999999999999999995 9999999999999999999887
Q ss_pred cCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 009431 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLA 518 (535)
Q Consensus 439 ~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A 518 (535)
.++++++++++|++||+.||++|++|||+|+.+++.+|++.| ++.++|||..+|++.||++.|||||+.||+++|++|
T Consensus 431 ~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h--~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A 508 (543)
T 1we3_A 431 LEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAET--KNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNA 508 (543)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCC--SCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc--CCCCEEEeCCCCeecccccCCcCccHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999877 356899999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhhcC
Q 009431 519 AECVRMILKIDDIVTV 534 (535)
Q Consensus 519 ~e~a~~iL~iD~ii~~ 534 (535)
+|+|++|||+|++|..
T Consensus 509 ~e~a~~iL~id~iI~~ 524 (543)
T 1we3_A 509 ASIGALILTTEAVVAE 524 (543)
T ss_dssp HHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999999875
No 24
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=6.9e-95 Score=778.61 Aligned_cols=459 Identities=23% Similarity=0.357 Sum_probs=424.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhccc
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDA 95 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~ 95 (535)
|+..+|.+++..|++||..|+++|++||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|+++++++|++
T Consensus 3 k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 82 (547)
T 1kp8_A 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAND 82 (547)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhh
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (535)
++||||||++|||++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +++.|.++++++++ ++
T Consensus 83 e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~e~l~~vA~iS~~------~~ 154 (547)
T 1kp8_A 83 AAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCS--DSKAIAQVGTISAN------SD 154 (547)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCC--SHHHHHHHHHHHTT------SC
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCC--CHHHHHHHHHHhcc------ch
Confidence 99999999999999999999999999999999999999999999999999999987 78999999999986 46
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCccee-eeEeeEEEecCCCCCC------CCceeeecceEEEEee
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDT-ELVKGLVFDKKASHAA------GGPTRVENAKIAVIQF 248 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~ 248 (535)
++++++++||+.+++++ +.|+|+ .|+++++| ++++|++|++++.+++ .|++.++||+|+++|+
T Consensus 155 ~~i~~liadAv~~V~~d--------g~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~ 224 (547)
T 1kp8_A 155 ETVGKLIAEAMDKVGKE--------GVITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADK 224 (547)
T ss_dssp HHHHHHHHHHHHHHCTT--------SEEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEES
T ss_pred hHHHHHHHHHHHHhCcC--------CcEEEE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcC
Confidence 89999999999999853 458886 79999999 9999999988766543 3888999999999999
Q ss_pred ecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCc---------
Q 009431 249 QISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKI--------- 319 (535)
Q Consensus 249 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I--------- 319 (535)
+++.. + .+.++++++.+.|+||||++++| ++.++++|..++|
T Consensus 225 ~Is~~-------------~-----------~l~~~le~i~~~g~~lvIi~~~I-----~~~Al~~L~~n~irg~~~v~aV 275 (547)
T 1kp8_A 225 KISNI-------------R-----------EMLPVLEAVAKAGKPLLIIAEDV-----EGEALATLVVNTMRGIVKVAAV 275 (547)
T ss_dssp EECCG-------------G-----------GTHHHHHHHHGGGCCEEEEESEE-----CHHHHHHHHHHGGGTSSCEEEE
T ss_pred cCCCH-------------H-----------HHHHHHHHHHhcCCCEEEECCCc-----CHHHHHHHHhcccccceeEEEE
Confidence 76542 2 24678999999999999999999 8888888887654
Q ss_pred --eeccCCCHHHHHHHHHHhCCeeecc-----ccCCCCCCceeeeEEEEEEecceEEEEEecccC---------------
Q 009431 320 --MVVKDVERDEIEFITKTLNCLPIAN-----IDHFRAEKLGHADLVEELSLGDGKIVKITGIKD--------------- 377 (535)
Q Consensus 320 --~~v~~v~~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~--------------- 377 (535)
++|+++++++|+|||++|||+++++ ++++++++||+|+.|++ +++++++|++|.+
T Consensus 276 k~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~ 352 (547)
T 1kp8_A 276 KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEEAAIQGRVAQIRQQI 352 (547)
T ss_dssp ECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred eccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 5666999999999999999999996 89999999999999977 4789999999864
Q ss_pred -------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhh
Q 009431 378 -------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438 (535)
Q Consensus 378 -------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~ 438 (535)
++++|||+|||+|+.+++|+||+++|||+++|++++++ +|||||++|++++.+|++++.
T Consensus 353 ~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~- 430 (547)
T 1kp8_A 353 EEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG- 430 (547)
T ss_dssp HSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC-
T ss_pred hcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc-
Confidence 12789999999999999999999999999999999995 999999999999999998876
Q ss_pred cCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 009431 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLA 518 (535)
Q Consensus 439 ~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A 518 (535)
.++++|+++++|++||+.||++|++|||+|+.+++.+|++. +.++|||..+|++.||++.|||||+.||+++|++|
T Consensus 431 ~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A 506 (547)
T 1kp8_A 431 QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506 (547)
T ss_dssp SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc----CCCEeEeCCCCccccchhcCceechHhHHHHHHHH
Confidence 78899999999999999999999999999999999999863 46899999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhhcC
Q 009431 519 AECVRMILKIDDIVTV 534 (535)
Q Consensus 519 ~e~a~~iL~iD~ii~~ 534 (535)
+|+|++|||+|++|..
T Consensus 507 ~~~A~~iL~id~iI~~ 522 (547)
T 1kp8_A 507 ASVAGLMITTECMVTD 522 (547)
T ss_dssp HHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHhHhheeec
Confidence 9999999999999875
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=1.2e-95 Score=785.16 Aligned_cols=460 Identities=21% Similarity=0.334 Sum_probs=397.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccCh----HHHHHHHHHhhccc
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQP----AAKMLVELSKSQDA 95 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~ 95 (535)
|+..+|.+++..|++||..|+++|++||||+||+|||+++.|+++|||||+||||+|+++|| +|+|+++++++||+
T Consensus 4 k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 83 (545)
T 1iok_A 4 KEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTND 83 (545)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhcc
Confidence 57789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhh
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (535)
++||||||+++||++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +++.|.++++++++ ++
T Consensus 84 e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~e~l~~va~iS~~------~~ 155 (545)
T 1iok_A 84 EAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVN--DSSEVAQVGTISAN------GE 155 (545)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCC--STTTTTHHHHHTTT------TC
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHHhhcC------Cc
Confidence 99999999999999999999999999999999999999999999999999999987 67889999999886 46
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCccee-eeEeeEEEecCCCCCC------CCceeeecceEEEEee
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDT-ELVKGLVFDKKASHAA------GGPTRVENAKIAVIQF 248 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~ 248 (535)
+++++++++|+.+++++ +.|+|+ .|+++++| ++++|++|++++.+++ .|++.++||+|+++|+
T Consensus 156 ~~i~~li~dAv~~V~~~--------g~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~ 225 (545)
T 1iok_A 156 SFIGQQIAEAMQRVGNE--------GVITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEK 225 (545)
T ss_dssp HHHHHHHHHHHHHHCTT--------SCCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSS
T ss_pred hhHHHHHHHHHHHhccC--------CeEEEE--eCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcC
Confidence 89999999999999854 346665 69999998 9999999988765542 3888999999999999
Q ss_pred ecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCc---------
Q 009431 249 QISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKI--------- 319 (535)
Q Consensus 249 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I--------- 319 (535)
+++..+ .+.++++++.+.|+||||++++| ++.++++|..++|
T Consensus 226 ~I~~~~------------------------~l~~~le~i~~~g~~lvIi~~~I-----~~~Al~~L~~n~irg~~~v~aV 276 (545)
T 1iok_A 226 KLSSLQ------------------------PMVPLLESVIQSQKPLLIVAEDV-----EGEALATLVVNKLRGGLKIAAV 276 (545)
T ss_dssp CBCCCC------------------------C-----------CCCCEEEESCB-----C-----------------CEEE
T ss_pred CcCCHH------------------------HHHHHHHHHHhcCCCEEEECCCc-----CHHHHHHHHHccccccceeEEE
Confidence 877542 24578899999999999999999 8888888877654
Q ss_pred --eeccCCCHHHHHHHHHHhCCeeecc-----ccCCCCCCceeeeEEEEEEecceEEEEEecccC---------------
Q 009431 320 --MVVKDVERDEIEFITKTLNCLPIAN-----IDHFRAEKLGHADLVEELSLGDGKIVKITGIKD--------------- 377 (535)
Q Consensus 320 --~~v~~v~~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~--------------- 377 (535)
++|+++++++|+|||++|||+++++ +++++++++|+|+.|++. .+++++|++|.+
T Consensus 277 k~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~~---~~~~~~i~g~~~~~~i~~r~~~i~~~~ 353 (545)
T 1iok_A 277 KAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSIN---KDNTTIVDGAGEKAEIEARVSQIRQQI 353 (545)
T ss_dssp ECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEEC---SSCEEEESCCCCHHHHHHHHHHHHHHH
T ss_pred ecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 6667999999999999999999996 999999999999999774 689999999863
Q ss_pred -------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhh
Q 009431 378 -------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKA 438 (535)
Q Consensus 378 -------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~ 438 (535)
++++|||+|||+|+.+++|.||+++|||+++|++++++ +|||||++|++++.+|++++.
T Consensus 354 ~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~- 431 (545)
T 1iok_A 354 EETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG- 431 (545)
T ss_dssp TTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-
T ss_pred hccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-
Confidence 24789999999999999999999999999999999995 999999999999999998876
Q ss_pred cCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 009431 439 LSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLA 518 (535)
Q Consensus 439 ~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A 518 (535)
.++++|+++++|++||+.||++|++|||+|+.+++.+|++.| +.++|||..+|++.||++.|||||+.||+++|++|
T Consensus 432 ~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A 508 (545)
T 1iok_A 432 ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS---DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDA 508 (545)
T ss_dssp SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCC---STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHH
Confidence 788999999999999999999999999999999999998755 46799999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhhcC
Q 009431 519 AECVRMILKIDDIVTV 534 (535)
Q Consensus 519 ~e~a~~iL~iD~ii~~ 534 (535)
+|+|++|||+|++|..
T Consensus 509 ~~~A~~iL~id~iI~~ 524 (545)
T 1iok_A 509 ASVAGLLITTEAMIAE 524 (545)
T ss_dssp HHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHhHHHhhcc
Confidence 9999999999999875
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=4e-94 Score=770.59 Aligned_cols=458 Identities=24% Similarity=0.341 Sum_probs=348.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChH----HHHHHHHHhhccc
Q 009431 20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPA----AKMLVELSKSQDA 95 (535)
Q Consensus 20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~ 95 (535)
|+..+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+ |+|+++++++|++
T Consensus 3 k~~~~~~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~ 82 (546)
T 3rtk_A 3 KTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDD 82 (546)
T ss_dssp ----------------------------------------------------------CCCHHHHHHHHHHHHHHTSCC-
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhh
Confidence 467899999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhh
Q 009431 96 AAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS 175 (535)
Q Consensus 96 ~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (535)
++||||||+++||++||+++.+++++|+||+.|++||+.|++.++++|+++++|++ +++.|.++|+++++ +
T Consensus 83 e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~--~~e~L~~vA~iS~~-------~ 153 (546)
T 3rtk_A 83 VAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVE--TKEQIAATAAISAG-------D 153 (546)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCC--SHHHHHHHHHHHHT-------C
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--ChHHHHhHeEEeCC-------c
Confidence 99999999999999999999999999999999999999999999999999999988 88999999999886 4
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCC------CCceeeecceEEEEeee
Q 009431 176 TLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQ 249 (535)
Q Consensus 176 ~~ls~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~ 249 (535)
+++++++++|+.+++.+ +.|+|++.. +...||++++|++|++++.+++ .|++.++||+|+++|++
T Consensus 154 ~~i~~liadAv~~V~~d--------gvI~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~k 224 (546)
T 3rtk_A 154 QSIGDLIAEAMDKVGNE--------GVITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSK 224 (546)
T ss_dssp HHHHHHHHHHHHHSCTT--------SEEEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSE
T ss_pred hHHHHHHHHHHHHhccC--------CceEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCc
Confidence 68999999999999863 468888633 4557999999999987765432 58999999999999997
Q ss_pred cCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcC------cee--
Q 009431 250 ISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSK------IMV-- 321 (535)
Q Consensus 250 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~------I~~-- 321 (535)
++.. + .+.++++++.+.|+||||++++| ++.++++|..++ +.+
T Consensus 225 Is~~-------------~-----------~l~~~le~I~~~g~~lvIi~~~I-----~~~Al~~L~~n~lrg~~~v~aVk 275 (546)
T 3rtk_A 225 VSTV-------------K-----------DLLPLLEKVIGAGKPLLIIAEDV-----EGEALSTLVVNKIRGTFKSVAVK 275 (546)
T ss_dssp ECCS-------------T-----------TTHHHHHHHHTTTCCEEEEESEE-----CHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCH-------------H-----------HHHHHHHHHHhcCCCEEEEcCCC-----CHHHHHHHHHhCCCCceEEEEec
Confidence 6543 2 24678999999999999999999 777777766432 333
Q ss_pred ---ccCCCHHHHHHHHHHhCCeeec-----cccCCCCCCceeeeEEEEEEecceEEEEEecccC----------------
Q 009431 322 ---VKDVERDEIEFITKTLNCLPIA-----NIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD---------------- 377 (535)
Q Consensus 322 ---v~~v~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~---------------- 377 (535)
|++.++++|+|||++|||++++ +++++++++||+|+.|+ ++++++++|++|..
T Consensus 276 ~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~ 352 (546)
T 3rtk_A 276 APGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIE 352 (546)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 4566799999999999999999 58999999999999997 47899999999754
Q ss_pred ------------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhc
Q 009431 378 ------------------MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKAL 439 (535)
Q Consensus 378 ------------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~ 439 (535)
++++|||+|||+|+.+++|+||+++|||+++|+++++ ++|||||++|++++.+|++++ .
T Consensus 353 ~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~-giVpGGGa~e~~~s~~L~~~~--~ 429 (546)
T 3rtk_A 353 NSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEE-GIVAGGGVTLLQAAPTLDELK--L 429 (546)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHH-CEEETTTHHHHTTGGGSTTSC--C
T ss_pred hccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhC-CcccCCcHHHHHHHHHHHHhc--c
Confidence 1358999999999999999999999999999999999 599999999999999999886 7
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccccHHHHHHHHHHHH
Q 009431 440 SGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAA 519 (535)
Q Consensus 440 ~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~ 519 (535)
++++|+++++|++||+.||++|++|||+|+.+++.+|++. ...+|||..+|++.||++.|||||+.||.++|++|+
T Consensus 430 ~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~----~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~ 505 (546)
T 3rtk_A 430 EGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL----PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAA 505 (546)
T ss_dssp CTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS----CTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh----cCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999873 234899999999999999999999999999999999
Q ss_pred HHHHHHHchhhhhcC
Q 009431 520 ECVRMILKIDDIVTV 534 (535)
Q Consensus 520 e~a~~iL~iD~ii~~ 534 (535)
|+|++|||+|++|..
T Consensus 506 e~A~~iL~id~iI~~ 520 (546)
T 3rtk_A 506 SIAGLFLTTEAVVAD 520 (546)
T ss_dssp HHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=1.4e-36 Score=280.98 Aligned_cols=173 Identities=23% Similarity=0.418 Sum_probs=149.5
Q ss_pred cceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009431 213 VDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGC 292 (535)
Q Consensus 213 ~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~ 292 (535)
++||++++|++| .+.+.+++||+.++||||++++|+|++++++.++++.++++++++++++.|++++++++++|++.|+
T Consensus 1 ~~dS~lv~Gvvl-~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~ 79 (178)
T 1gml_A 1 MEDSCVLRGVMI-NKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKP 79 (178)
T ss_dssp --CCSEEEEEEE-SCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEEE-eccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 368999999999 5568888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCeeeccccCCCCCCcee-eeEEEEEEecceEEEE
Q 009431 293 NVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGH-ADLVEELSLGDGKIVK 371 (535)
Q Consensus 293 ~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~ 371 (535)
||||++++| +|++++||.++||++++++++++|+|||++|||++++++++++++.+|+ |+.|++.++|+++|++
T Consensus 80 nVVl~~k~I-----~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~ 154 (178)
T 1gml_A 80 DVVITEKGI-----SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTF 154 (178)
T ss_dssp SEEEESSCB-----CHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEE
T ss_pred cEEEECCcc-----cHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EecccCCCceEEEEecCCCHH
Q 009431 372 ITGIKDMGRTTTVLVRGSNQL 392 (535)
Q Consensus 372 ~~~~~~~~~~~TIll~G~t~~ 392 (535)
|+||++ ++.|||+|||++.+
T Consensus 155 ~~gc~~-~~~~TIllRG~~~~ 174 (178)
T 1gml_A 155 ITDCKD-PKACTILLRGASHH 174 (178)
T ss_dssp EEEESS-TTSCEEEEEC----
T ss_pred EECCCC-CCEEEEEEECCCcc
Confidence 999998 89999999999875
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=99.97 E-value=7.5e-32 Score=244.39 Aligned_cols=153 Identities=35% Similarity=0.554 Sum_probs=148.1
Q ss_pred EeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEc
Q 009431 219 VKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQ 298 (535)
Q Consensus 219 i~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~ 298 (535)
++|++| .+.+.+++||+.++||||++++|+|+++++++++++.++++++++++++.|+++++.++++|++.|+||||++
T Consensus 1 i~Gvv~-~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~ 79 (159)
T 1ass_A 1 MSGIVI-DKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 79 (159)
T ss_dssp CCCEEE-SCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CceEEE-ecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEEC
Confidence 479999 5568888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccC
Q 009431 299 KSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD 377 (535)
Q Consensus 299 ~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~ 377 (535)
++| +|++++||.++||++++++++++|+|||++|||++++++++++++.+|+|+.|++.++|+++|++|++|++
T Consensus 80 k~I-----~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~ 153 (159)
T 1ass_A 80 KGI-----DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153 (159)
T ss_dssp SCB-----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC-
T ss_pred Ccc-----CHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCC
Confidence 999 99999999999999999999999999999999999999999999999999999999999999999999976
No 29
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.57 E-value=5.4e-15 Score=133.83 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=124.3
Q ss_pred eeeEeeEEEecCCCCCC------CCceeeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 009431 216 TELVKGLVFDKKASHAA------GGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKA 289 (535)
Q Consensus 216 S~li~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~ 289 (535)
.++++|+.||++|+|++ .|...++||.|++.+..+... +.+.+.++.+.+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i------------------------~~ilP~LE~~~~ 57 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSL------------------------PDLLPLLEKVAG 57 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCH------------------------HHHHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccCCH------------------------HHHHHHHHHHHH
Confidence 46889999999999885 378899999999998776642 568899999999
Q ss_pred cCCcEEEEcCCccccccchHHHHHHHh-cC-----ceeccCCCHHHHHHHHHHhCCeeecc-----ccCCCCCCceeeeE
Q 009431 290 TGCNVLLIQKSILRDAVTDLSLHYLAK-SK-----IMVVKDVERDEIEFITKTLNCLPIAN-----IDHFRAEKLGHADL 358 (535)
Q Consensus 290 ~~~~lvi~~~~I~~~~l~~~~~~~l~~-~~-----I~~v~~v~~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~ 358 (535)
.+.+|+|++.+|++|||..++.|.++. .+ .|.|+..++..|++||.+|||++++. +++.+.++||+|++
T Consensus 58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~ 137 (194)
T 3m6c_A 58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARR 137 (194)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccE
Confidence 999999999999999999999999974 23 46778888999999999999999984 67888899999999
Q ss_pred EEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009431 359 VEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVV 408 (535)
Q Consensus 359 v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 408 (535)
|.+++ ...||+=+++++..++++...++.-+...
T Consensus 138 v~vtk----------------d~T~iv~G~g~~~~I~~Rv~qIr~~ie~t 171 (194)
T 3m6c_A 138 VVVSK----------------DDTVIVDGGGTAEAVANRAKHLRAEIDKS 171 (194)
T ss_dssp EEECS----------------SCEEEEEECCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEcC----------------CceEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence 87641 23344435567777777777777666543
No 30
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=99.54 E-value=3.1e-14 Score=129.12 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=121.5
Q ss_pred eeEEEecCCCCCC------CCceeeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 009431 220 KGLVFDKKASHAA------GGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCN 293 (535)
Q Consensus 220 ~Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~ 293 (535)
+|+.||++|+|++ .|...++||.|++.+..+... +.+.++++.+.+.+.+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i------------------------~~ilP~LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNI------------------------RELLPVLEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCH------------------------HHHHHHHHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCccCCH------------------------HHHHHHHHHHHHhCCC
Confidence 5999999999875 277899999999999887642 5689999999999999
Q ss_pred EEEEcCCccccccchHHHHHHHh-cC-----ceeccCCCHHHHHHHHHHhCCeeecc-----ccCCCCCCceeeeEEEEE
Q 009431 294 VLLIQKSILRDAVTDLSLHYLAK-SK-----IMVVKDVERDEIEFITKTLNCLPIAN-----IDHFRAEKLGHADLVEEL 362 (535)
Q Consensus 294 lvi~~~~I~~~~l~~~~~~~l~~-~~-----I~~v~~v~~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~ 362 (535)
|+|++.+|++|||..++.|.++. .+ .|.|+..++..|++||.+|||++++. +++++.++||+|++|.++
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vt 148 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVIN 148 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEEC
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEc
Confidence 99999999999999999999974 23 46677888999999999999999984 677888899999998764
Q ss_pred EecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 009431 363 SLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVV 408 (535)
Q Consensus 363 ~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 408 (535)
+ ...||+=+++++..++++...++.-+...
T Consensus 149 k----------------d~TtIv~G~G~~~~I~~Rv~qIr~qie~t 178 (201)
T 3osx_A 149 K----------------DTTTIIDGVGEEGAIAARVTQIRQQIEES 178 (201)
T ss_dssp S----------------SCEEEEEECCCHHHHHHHHHHHHHHHHTC
T ss_pred C----------------CceEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence 1 23344435567777777777777666543
No 31
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=99.52 E-value=2e-14 Score=124.09 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=102.7
Q ss_pred eEEEecCCCCCC------CCceeeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Q 009431 221 GLVFDKKASHAA------GGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNV 294 (535)
Q Consensus 221 Giv~~~~~~~~~------~~~~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~l 294 (535)
|+.||++|+|++ .|...++||.|++.+..++.. +.+.+.++++.+.+.+|
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i------------------------~~llP~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNV------------------------RELLPILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCH------------------------HHHHHHHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEecccccCH------------------------HHHHHHHHHHHHHCCCE
Confidence 889999999875 278889999999998876642 56889999999999999
Q ss_pred EEEcCCccccccchHHHHHHHh------cCceeccCCCHHHHHHHHHHhCCeeecc-----ccCCCCCCceeeeEEEEE
Q 009431 295 LLIQKSILRDAVTDLSLHYLAK------SKIMVVKDVERDEIEFITKTLNCLPIAN-----IDHFRAEKLGHADLVEEL 362 (535)
Q Consensus 295 vi~~~~I~~~~l~~~~~~~l~~------~~I~~v~~v~~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~ 362 (535)
+|++.+|++|||..++.|.++. -+.|.|+..++..|++||.+|||++++. +++.+.++||+|++|.++
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vt 135 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRIT 135 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEEC
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEc
Confidence 9999999999999999999964 2346778889999999999999999984 567788899999999775
No 32
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=52.30 E-value=18 Score=27.69 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
+.++.+.+..+.+||++.+.+++ +-.....++.+++|+.+.--++.+ |..++|-
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~-~~~~i~~lc~~~~Ip~~~v~sk~e---LG~a~Gk 71 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADPI-LTSSVVSLAEDQGISVSMVESMKK---LGKACGI 71 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHH---HHHHHTC
T ss_pred HHHHHHHcCCeeEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEECCHHH---HHHHhCC
Confidence 44566666678999999999553 333345677789999988666655 4455553
No 33
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=52.28 E-value=26 Score=29.31 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
..++.+.+..+.+||++.+.++..+-.....++.+++|+.+..-+ ..+|..++|-
T Consensus 31 ~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~s---k~~LG~a~G~ 85 (126)
T 2xzm_U 31 EVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPK---RASLGEYLGH 85 (126)
T ss_dssp HHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESC---SHHHHHHHTC
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECC---HHHHHHHHCC
Confidence 345556667789999999996544445667788899999986444 4456666664
No 34
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=52.05 E-value=26 Score=29.63 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=39.4
Q ss_pred HHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 283 ~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
..+.|.+.++++||+ ++| .+-+...|.+.||-++......--+.|.....++
T Consensus 68 ~a~~L~~~gv~vVI~-g~I-----G~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~ 119 (136)
T 1o13_A 68 VPNFVKEKGAELVIV-RGI-----GRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 119 (136)
T ss_dssp HHHHHHHTTCSEEEC-SCC-----CHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEE-CCC-----CHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCC
Confidence 456667789999999 578 9999999999999999866654445555555554
No 35
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=51.64 E-value=28 Score=28.68 Aligned_cols=55 Identities=5% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
+..+.+.+-.+.+||.+.++++..+-.....++.+++|+.+..-++.+ |..++|-
T Consensus 36 ~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~e---LG~a~G~ 90 (120)
T 1vq8_F 36 ETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDD---LGHAAGL 90 (120)
T ss_dssp HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHH---HHHHhCC
Confidence 345556666788999999997755444566788889999877666554 5556664
No 36
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=50.78 E-value=37 Score=28.05 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN 338 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 338 (535)
..++.+.+..+.+||++.++++..+-.....+|.++||+.+..-++.+|- .++|
T Consensus 27 ~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG---~a~g 80 (121)
T 2lbw_A 27 EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLG---AAGA 80 (121)
T ss_dssp HHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHH---HHHT
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHH---HHhC
Confidence 34566666778999999999543333334567888999987766665554 4566
No 37
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=50.53 E-value=26 Score=28.98 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
...+.+.+..+.+||.+.++++..+-.....++.+++|+.+..-++.+ |..++|-
T Consensus 36 ~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e---LG~a~G~ 90 (120)
T 1xbi_A 36 EVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQD---LGKAAGL 90 (120)
T ss_dssp HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHH---HHHHhCC
Confidence 345556666789999999997655445566788889999776666554 4555654
No 38
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=50.44 E-value=29 Score=28.82 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
+..+.+.+..+.+||.+.++++..+-.....++.+++|+.+..-++.+ |..++|-
T Consensus 35 ~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~e---LG~a~G~ 89 (124)
T 2fc3_A 35 ETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKR---LGEAAGI 89 (124)
T ss_dssp HHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHhCC
Confidence 445566666789999999997655444556788889999776666554 5555654
No 39
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=49.23 E-value=26 Score=27.94 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
+..+.+.+-.+.+||.+.+.++.....+ .+++..++|+.+...++.+ |..++|-.
T Consensus 26 ~v~kai~~gka~lViiA~D~~~~~~~~i-~~~c~~~~vp~~~~~s~~e---LG~A~Gk~ 80 (101)
T 3v7q_A 26 LVIKEIRNARAKLVLLTEDASSNTAKKV-TDKCNYYKVPYKKVESRAV---LGRSIGKE 80 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHH-HHHHHHTTCCEEEESCHHH---HHHHTTSS
T ss_pred hhHHHHhcCceeEEEEeccccccchhhh-cccccccCCCeeeechHHH---HHhhhCcc
Confidence 4455666677899999999965544443 5667789999988765554 55666654
No 40
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=48.80 E-value=29 Score=28.39 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
...+.|...++++||+. +| .+-+...|.+.||-++......--+-|.....+.
T Consensus 54 ~~~~~L~~~gv~~vi~~-~i-----G~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~ 106 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GI-----GRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGK 106 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BC-----CHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CC-----CHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCC
Confidence 44566677899999995 68 9999999999999988765544445555555444
No 41
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=48.10 E-value=27 Score=28.76 Aligned_cols=56 Identities=4% Similarity=0.056 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
.+..+.+.+-.+.+||.+.++++..+-.....++.+++|+.+..-++.+ |..++|-
T Consensus 33 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~e---LG~a~G~ 88 (119)
T 1rlg_A 33 NETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKND---LGRAVGI 88 (119)
T ss_dssp HHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 3445556666688999999997765445566788889999776666554 4555664
No 42
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=47.32 E-value=40 Score=27.63 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=38.9
Q ss_pred HHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 283 ~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
..+.|...||++|||. +| .+-+...|.+.||-++......--+-|.....+.
T Consensus 57 ~~~~l~~~gv~~vi~~-~i-----G~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 57 TAQIIANNGVKAVIAS-SP-----GPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHHTTCCEEEEC-CS-----SHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-Cc-----CHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 3556667899999995 68 9999999999999988765544445555555554
No 43
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=46.92 E-value=37 Score=28.13 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
....+.+.+..+.+||.+.+.++..+-.....++.++||+.+..-++.+ |..++|-
T Consensus 37 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e---LG~a~Gk 92 (122)
T 3o85_A 37 NEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNA---LGRACNV 92 (122)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHH---HHHHhCC
Confidence 3445566666789999999996654434456788889999777666554 5566664
No 44
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=43.43 E-value=33 Score=27.96 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCH-HHHHHHHHHhCC
Q 009431 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVER-DEIEFITKTLNC 339 (535)
Q Consensus 283 ~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~-~~L~~ia~~tGa 339 (535)
..+.|...++++|||. +| .+-+...|.+.||-++..... .--+-|.....+
T Consensus 59 ~~~~l~~~gv~~vi~~-~i-----G~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~g 110 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YV-----GPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLDG 110 (120)
T ss_dssp HHHHHHHHTEEEEECS-CC-----CHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEEC-CC-----CHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHcC
Confidence 4566667899999995 68 999999999999999886554 444444444444
No 45
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=39.58 E-value=42 Score=26.57 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
.+.++.+.+-.+.+||.+.+.+++... ...+++..++|+.+...++.+ |..++|-.
T Consensus 24 ~~v~kai~~gka~lViiA~D~~~~~~~-~i~~~c~~~~ip~~~~~s~~e---LG~a~Gk~ 79 (101)
T 3on1_A 24 EQVVKAVQNGQVTLVILSSDAGIHTKK-KLLDKCGSYQIPVKVVGNRQM---LGRAIGKH 79 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHH-HHHHHHHHHTCCEEEESCHHH---HHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHH-HHHHHHHHcCCCEEEeCCHHH---HHHHhCCc
Confidence 344566666778999999999555333 244567788999987655554 55666653
No 46
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=38.30 E-value=37 Score=28.68 Aligned_cols=56 Identities=5% Similarity=-0.107 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
+..+.+.+..+.+||.+.+.++..+-.....++.+++|+.+...++. .|..++|-.
T Consensus 48 ~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~---eLG~a~G~~ 103 (135)
T 2aif_A 48 EATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKV---ALGRACGVS 103 (135)
T ss_dssp HHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHH---HHHHHTTCS
T ss_pred HHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHH---HHHHHhCCC
Confidence 44555656667899999999544332334467778999988766554 455666643
No 47
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=37.78 E-value=59 Score=27.28 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
...+.|...++++||+ ++| .+-+.+.|.+ ||-++......-=+.|.....+.
T Consensus 70 ~~~~~L~~~gv~~VI~-g~i-----G~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G~ 121 (136)
T 2re2_A 70 FMLKSALDHGANALVL-SEI-----GSPGFNFIKN-KMDVYIVPEMPVADALKLILEGK 121 (136)
T ss_dssp HHHHHHHHTTCSEEEE-SCC-----BHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEE-CCC-----CHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhCC
Confidence 3456666789999999 578 9999999999 99988775533344444444443
No 48
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=35.36 E-value=39 Score=27.32 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=38.8
Q ss_pred HHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCe
Q 009431 283 MIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCL 340 (535)
Q Consensus 283 ~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 340 (535)
..+.|...++++||+. +| .+-+.+.|.+.||-++......--+-|.....++
T Consensus 54 ~~~~l~~~gv~~vi~~-~i-----G~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 105 (116)
T 1rdu_A 54 VVQSLVSKGVEYLIAS-NV-----GRNAFETLKAAGVKVYRFEGGTVQEAIDAFSEGR 105 (116)
T ss_dssp HHHHHHTTTCCEEECS-SC-----CSSCHHHHHTTTCEEECCCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEC-CC-----CHhHHHHHHHCCCEEEECCCCCHHHHHHHHHhCC
Confidence 3456668899999995 68 8999999999999988866554445555555554
No 49
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=34.12 E-value=75 Score=25.57 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccC-CCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKD-VERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~-v~~~~L~~ia~~tGa 339 (535)
....+.+.+-.+.+||.+.+.+.+ +-....+++.+++|+++.. .++.+ |..++|-
T Consensus 27 ~~v~kai~~gka~lViiA~D~~~~-~~~~l~~~c~~~~Vp~~~~~~sk~e---LG~a~G~ 82 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNIPKD-LEEDVKYYAKLSNIPVYQHKITSLE---LGAVCGK 82 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTCBHH-HHHHHHHHHHHTTCCEEECCSCHHH---HHHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEEcCCHHH---HHHHhCC
Confidence 345566666778999999999222 2223335677789998766 55554 5556664
No 50
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=34.09 E-value=56 Score=27.55 Aligned_cols=55 Identities=5% Similarity=-0.075 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
..++.+.+..+.+||++.++++--+-.....+|.+.||+.+.--++. +|..++|-
T Consensus 39 ~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~---eLG~a~G~ 93 (134)
T 2ale_A 39 EATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRV---ALGRACGV 93 (134)
T ss_dssp HHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHH---HHHHHTTC
T ss_pred HHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHH---HHHHHhCC
Confidence 34555656667899999999553222335577888899877654444 56666664
No 51
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=33.96 E-value=28 Score=28.57 Aligned_cols=57 Identities=9% Similarity=0.007 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCee
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLP 341 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~i 341 (535)
..++.+.+..+.+|+++.++++..+-.....+|.++||+.+.--++. +|..++|-..
T Consensus 32 ~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~---~LG~a~G~k~ 88 (113)
T 3jyw_G 32 HVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKA---RLGTLVNQKT 88 (113)
T ss_dssp HHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCST---TTHHHHCSSS
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHHCCCC
Confidence 34555666678999999999443222334567888999988666654 4556666543
No 52
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=32.78 E-value=45 Score=28.53 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHH--hcCceeccCCCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLA--KSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~--~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
++.++.|.+-.+.+++.+.+.+++.+-..+..++. +++|+.+.--+ .+.|..++|.
T Consensus 46 ~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s---~keLG~a~Gl 103 (143)
T 3u5c_M 46 RESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVAD---AKQLGEWAGL 103 (143)
T ss_dssp HHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSC---HHHHHHHSSC
T ss_pred HHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECC---HHHHhHHhCc
Confidence 34555666667899999999976666667777889 89999988665 4555666664
No 53
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=30.36 E-value=78 Score=25.15 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceecc-CCCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVK-DVERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~-~v~~~~L~~ia~~tGa 339 (535)
.+.++.+.+-.+.+||.+.+.++.... ...+++..++|+++. .-++.+ |..++|-
T Consensus 28 ~~v~kai~~gkaklViiA~D~~~~~~~-~i~~~c~~~~ip~~~~~~s~~e---LG~a~Gk 83 (104)
T 4a18_G 28 KSTIKAIRNGTAKLVFISNNCPTVRKS-EIEYYASLAQISIHHFVGSNVE---LGTACGK 83 (104)
T ss_dssp HHHHHHHHHTCCCEEEECTTSCHHHHH-HHHHHHHHHTCEEEECSSCHHH---HHHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHH-HHHHHHHHcCCcEEEecCCHHH---HHHHhCC
Confidence 445666667778999999999544322 233566678999985 566555 5566664
No 54
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=27.69 E-value=93 Score=29.22 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
...+..|.+-.+.|||++.++++.-+-..+..+|.++||+.+-.-++ ++|..++|-
T Consensus 137 keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK---~eLG~A~Gk 192 (256)
T 3izc_H 137 NHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGK---ARLGTLVNQ 192 (256)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCH---HHHHHHTTC
T ss_pred HHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCC
Confidence 34455666667899999999966555555678888999998755554 456666764
No 55
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=26.43 E-value=85 Score=30.14 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=38.7
Q ss_pred HHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCC--------------------------HHHHHHHHHHh
Q 009431 284 IKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVE--------------------------RDEIEFITKTL 337 (535)
Q Consensus 284 l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~--------------------------~~~L~~ia~~t 337 (535)
++.|...+++|||..... +.-..+.|.+.||+++-.-. .+.++.++.++
T Consensus 77 ~E~i~~l~PDlIi~~~~~-----~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~l 151 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYA-----PSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVF 151 (326)
T ss_dssp HHHHHHTCCSEEEEETTC-----CHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCEEEEeCCC-----ChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHc
Confidence 577888899999987655 55567888888988773210 36788899999
Q ss_pred CCe
Q 009431 338 NCL 340 (535)
Q Consensus 338 Ga~ 340 (535)
|-.
T Consensus 152 g~e 154 (326)
T 3psh_A 152 EKK 154 (326)
T ss_dssp TCH
T ss_pred CCH
Confidence 864
No 56
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=26.12 E-value=62 Score=28.33 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=36.1
Q ss_pred HhcCCcEEEEcCCcccccc------chHHHHHHHhcCceeccCCCHHHHHHHHHH
Q 009431 288 KATGCNVLLIQKSILRDAV------TDLSLHYLAKSKIMVVKDVERDEIEFITKT 336 (535)
Q Consensus 288 ~~~~~~lvi~~~~I~~~~l------~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~ 336 (535)
.+-.+.+++.+.+.++... -.++..+|.+++|+.+.--++..|-+.+-.
T Consensus 50 ~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~Gi 104 (165)
T 2kg4_A 50 DPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLL 104 (165)
T ss_dssp CTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHHCC
Confidence 3445679999999965554 445667899999999987776666666554
No 57
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=25.57 E-value=1.1e+02 Score=24.26 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceecc-CCCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVK-DVERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~-~v~~~~L~~ia~~tGa 339 (535)
.+.++.|.+-.+.+||.+.+.+++.. ....+++..++|+++. .-++.+ |..++|-
T Consensus 28 ~~v~kai~~gkaklVilA~D~~~~~~-~~i~~~c~~~~ip~~~~~~s~~e---LG~A~Gk 83 (105)
T 3u5e_c 28 KSTVKSLRQGKSKLIIIAANTPVLRK-SELEYYAMLSKTKVYYFQGGNNE---LGTAVGK 83 (105)
T ss_dssp HHHHHHHHTTCCSEEEECTTSCHHHH-HHHHHHHHHHTCEEEECSSCHHH---HHHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHH-HHHHHHHHHcCCCEEEeCCCHHH---HHHHhCC
Confidence 44566677777899999999943322 2234566778999984 555555 5566664
No 58
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.20 E-value=1.2e+02 Score=28.73 Aligned_cols=55 Identities=4% Similarity=-0.016 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
..+..|.+-.+.|||++.++++..+-.....+|.++||+.+---++.+ |..++|-
T Consensus 142 eV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~e---LG~A~Gk 196 (266)
T 2zkr_f 142 TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKAR---LGHLVHR 196 (266)
T ss_dssp HHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHH---HHHHHTS
T ss_pred HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHH---HHHHhCC
Confidence 345666666789999999996654444666889999999877666554 5555554
No 59
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=25.17 E-value=1.2e+02 Score=23.86 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCC
Q 009431 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339 (535)
Q Consensus 285 ~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 339 (535)
+.+...++++||| +++ .+-+.+.|.+. |-++.....+--+-|.....+
T Consensus 50 ~~l~~~gv~~vi~-~~i-----G~~a~~~L~~~-I~v~~~~~~~v~eal~~~~~g 97 (105)
T 2qtd_A 50 KSIVKENVNAIIC-KNI-----SEENYKKFSKK-IEIYHAEGDDVDKNISLFIEG 97 (105)
T ss_dssp HHHHHTCCSEEEE-SCC-----CHHHHHHHHTT-CEEEECCSSCHHHHHHHHHTT
T ss_pred HHHHHCCCCEEEE-CCC-----CHHHHHHHHhc-cEEEECCCCCHHHHHHHHHcC
Confidence 4556689999999 578 99999999999 988876554444444444444
No 60
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=24.85 E-value=1e+02 Score=24.22 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccC-CCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKD-VERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~-v~~~~L~~ia~~tGa 339 (535)
.+..+.+.+-.+.+||.+.+.+.+ +-....+++.+++|+++.. -++.+ |..++|-
T Consensus 22 ~~v~kai~~gka~lViiA~D~~~~-~~~~l~~~c~~~~vp~~~~~~s~~e---LG~a~G~ 77 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARNARPD-IKEDIEYYARLSGIPVYEFEGTSVE---LGTLLGR 77 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESSCHHH---HHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHhcCCCEEEecCCHHH---HHHHhCC
Confidence 344556666778999999997222 2223335677789997764 55555 5555664
No 61
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=22.97 E-value=1.6e+02 Score=23.72 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccC-CCHHHHHHHHHHhCC
Q 009431 281 LGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKD-VERDEIEFITKTLNC 339 (535)
Q Consensus 281 ~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~-v~~~~L~~ia~~tGa 339 (535)
.+.++.|.+-.+.+||++.+.++.. -....+++..++|+++.- -++.+| ..++|-
T Consensus 32 ~~t~kai~~gkakLVilA~D~~~~~-~~~i~~~c~~~~ipv~~~~~s~~eL---G~A~Gk 87 (112)
T 3iz5_f 32 KTVLKTLRSSLGKLIILANNCPPLR-KSEIETYAMLAKISVHHFHGNNVDL---GTACGK 87 (112)
T ss_dssp HHHHHHHHTTCCSEEEECSCCCHHH-HHHHHHHHHHTTCCEECCCCTTCTH---HHHHCT
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHH-HHHHHHHHHHcCCcEEEeCCCHHHH---HHHhCC
Confidence 4456677777789999999994321 223445677889998876 555554 444553
No 62
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.63 E-value=87 Score=24.58 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccC-CCHHH
Q 009431 282 GMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKD-VERDE 329 (535)
Q Consensus 282 ~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~-v~~~~ 329 (535)
+.++.+.+-.+.+||.+.+.+.+.. ....+++..++|+++.. .++.+
T Consensus 22 ~v~kai~~gka~lViiA~D~~~~~~-~~i~~~c~~~~ip~~~~~~s~~e 69 (99)
T 3j21_Z 22 ETIRLAKTGGAKLIIVAKNAPKEIK-DDIYYYAKLSDIPVYEFEGTSVE 69 (99)
T ss_dssp HHHHHHHHTCCSEEEEECCCCHHHH-HHHHHHHHHTTCCEEEECCCSCG
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHH-HHHHHHHHHcCCCEEEeCCCHHH
Confidence 4455666677899999999732222 22334556677776544 34433
No 63
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=21.43 E-value=95 Score=28.55 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=36.4
Q ss_pred HHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceecc--CCC----HHHHHHHHHHhCCe
Q 009431 284 IKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVK--DVE----RDEIEFITKTLNCL 340 (535)
Q Consensus 284 l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~--~v~----~~~L~~ia~~tGa~ 340 (535)
++.|...+++|||..... +.-....|.+.||+++. .-+ .+.++.++.++|-.
T Consensus 53 ~E~i~~l~PDLIi~~~~~-----~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTI-----KDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGGG-----HHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCcc-----CHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 577788899999987655 55566788888887653 212 34677788888853
No 64
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=20.76 E-value=2.4e+02 Score=27.18 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCc--eec----cCCCHHHHHHHHHHhCCeee
Q 009431 277 RNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKI--MVV----KDVERDEIEFITKTLNCLPI 342 (535)
Q Consensus 277 ~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I--~~v----~~v~~~~L~~ia~~tGa~ii 342 (535)
.++++++++. |++.+++|--+|.+.+-.+. +.+++.|| +++ --.+...+++++.++|+.+=
T Consensus 166 ~~~Lk~KvdA----GAdf~iTQ~ffD~~~~~~f~-~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP 232 (304)
T 3fst_A 166 LLNLKRKVDA----GANRAITQFFFDVESYLRFR-DRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIP 232 (304)
T ss_dssp HHHHHHHHHH----TCCEEEECCCSCHHHHHHHH-HHHHHTTCCSCEECEECCCSCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHc----CCCEEEeCccCCHHHHHHHH-HHHHhcCCCCcEEEEecccCCHHHHHHHHHcCCCcCC
Confidence 3556666654 99999999999555444433 34555653 332 35678899999999998664
No 65
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=20.48 E-value=1.2e+02 Score=29.63 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=34.2
Q ss_pred HHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCC-----C------HHHHHHHHHHhCCe
Q 009431 284 IKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDV-----E------RDEIEFITKTLNCL 340 (535)
Q Consensus 284 l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v-----~------~~~L~~ia~~tGa~ 340 (535)
++.|..++++|||....- .+...+++++.||+++.-- . .+.++.++.++|-.
T Consensus 89 ~E~Ilal~PDLIi~~~~~-----~~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYVD-----RXTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESCC-----HHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCCc-----cchHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 567777889999986542 3455566777788766321 0 45677788888753
Done!