Query 009432
Match_columns 535
No_of_seqs 254 out of 1476
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 13:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08433 KTI12: Chromatin asso 99.8 8.5E-20 1.8E-24 185.0 14.0 146 185-362 3-153 (270)
2 PF13671 AAA_33: AAA domain; P 99.8 2.2E-18 4.7E-23 154.4 12.3 134 185-348 1-143 (143)
3 TIGR01663 PNK-3'Pase polynucle 99.8 5.8E-18 1.2E-22 185.3 16.4 153 143-348 330-493 (526)
4 COG4639 Predicted kinase [Gene 99.8 9.3E-18 2E-22 157.2 13.2 128 183-344 2-132 (168)
5 PF01591 6PF2K: 6-phosphofruct 99.8 4.7E-18 1E-22 168.0 11.8 156 176-356 5-179 (222)
6 COG4088 Predicted nucleotide k 99.7 5.3E-17 1.1E-21 158.5 13.6 148 185-361 3-153 (261)
7 TIGR03575 selen_PSTK_euk L-ser 99.7 5.5E-16 1.2E-20 161.9 15.8 173 185-362 1-208 (340)
8 TIGR03574 selen_PSTK L-seryl-t 99.7 6.7E-16 1.4E-20 153.1 13.9 144 185-361 1-147 (249)
9 PHA02530 pseT polynucleotide k 99.6 4.5E-15 9.8E-20 149.8 15.6 140 183-350 2-145 (300)
10 PRK06762 hypothetical protein; 99.6 6.8E-14 1.5E-18 129.6 14.6 130 183-347 2-136 (166)
11 KOG3062 RNA polymerase II elon 99.5 5.6E-14 1.2E-18 138.7 11.1 148 185-361 3-157 (281)
12 COG0645 Predicted kinase [Gene 99.5 4.8E-13 1E-17 127.1 13.1 140 183-348 1-146 (170)
13 PF01583 APS_kinase: Adenylyls 99.5 8E-13 1.7E-17 124.6 14.1 145 182-357 1-152 (156)
14 cd02021 GntK Gluconate kinase 99.5 1E-12 2.2E-17 119.6 13.7 133 185-349 1-139 (150)
15 cd00227 CPT Chloramphenicol (C 99.4 1.8E-12 4E-17 122.0 14.7 127 184-331 3-130 (175)
16 cd02027 APSK Adenosine 5'-phos 99.4 1.4E-12 3E-17 120.6 12.6 117 185-332 1-117 (149)
17 TIGR00455 apsK adenylylsulfate 99.4 6E-12 1.3E-16 119.1 15.1 120 181-331 16-135 (184)
18 TIGR01313 therm_gnt_kin carboh 99.4 1.2E-11 2.7E-16 114.2 14.7 129 186-347 1-133 (163)
19 COG0529 CysC Adenylylsulfate k 99.2 8E-11 1.7E-15 113.1 12.7 135 179-344 19-153 (197)
20 PTZ00322 6-phosphofructo-2-kin 99.2 7.6E-11 1.6E-15 133.0 14.1 152 182-356 214-377 (664)
21 PRK05537 bifunctional sulfate 99.2 1.5E-10 3.2E-15 128.7 15.2 122 181-331 390-511 (568)
22 PRK05506 bifunctional sulfate 99.2 1.6E-10 3.5E-15 129.6 15.0 119 181-330 458-576 (632)
23 PRK00889 adenylylsulfate kinas 99.2 5.1E-10 1.1E-14 105.0 13.8 117 182-331 3-119 (175)
24 KOG4622 Predicted nucleotide k 99.2 6.1E-11 1.3E-15 115.4 7.5 154 184-361 2-175 (291)
25 PF06414 Zeta_toxin: Zeta toxi 99.1 4.7E-10 1E-14 108.0 12.6 126 180-328 12-137 (199)
26 PRK03846 adenylylsulfate kinas 99.1 1.5E-09 3.3E-14 104.4 13.4 119 180-329 21-139 (198)
27 PRK14527 adenylate kinase; Pro 99.0 1.6E-09 3.6E-14 103.3 11.3 141 180-347 3-155 (191)
28 TIGR01359 UMP_CMP_kin_fam UMP- 99.0 2.7E-09 5.8E-14 100.1 11.5 119 185-330 1-122 (183)
29 PRK05541 adenylylsulfate kinas 99.0 5.3E-09 1.1E-13 98.2 13.2 117 181-331 5-121 (176)
30 PRK14531 adenylate kinase; Pro 99.0 4E-09 8.7E-14 100.3 12.2 132 185-347 4-147 (183)
31 PRK14532 adenylate kinase; Pro 99.0 3.6E-09 7.9E-14 100.1 10.4 119 185-328 2-123 (188)
32 PF07931 CPT: Chloramphenicol 98.9 7.4E-09 1.6E-13 99.4 11.8 127 184-331 2-129 (174)
33 KOG2134 Polynucleotide kinase 98.9 3.2E-09 6.9E-14 111.7 9.3 148 143-348 234-393 (422)
34 KOG0234 Fructose-6-phosphate 2 98.9 5E-09 1.1E-13 112.1 10.8 153 179-356 24-196 (438)
35 PRK09825 idnK D-gluconate kina 98.8 8.2E-08 1.8E-12 91.6 14.7 132 184-348 4-139 (176)
36 KOG2400 Nuclear protein ZAP [D 98.8 1.1E-09 2.4E-14 88.6 1.0 52 454-511 6-65 (82)
37 PRK11545 gntK gluconate kinase 98.8 1.5E-07 3.2E-12 88.5 14.4 127 189-348 1-131 (163)
38 TIGR01360 aden_kin_iso1 adenyl 98.8 5.2E-08 1.1E-12 91.2 11.3 122 183-330 3-125 (188)
39 PRK12339 2-phosphoglycerate ki 98.7 8.7E-08 1.9E-12 93.4 11.4 127 182-325 2-133 (197)
40 PRK06696 uridine kinase; Valid 98.7 7.8E-09 1.7E-13 101.3 3.8 46 181-227 20-65 (223)
41 PRK07667 uridine kinase; Provi 98.7 1.9E-07 4.1E-12 89.9 12.5 46 181-227 15-60 (193)
42 cd01428 ADK Adenylate kinase ( 98.7 1.1E-07 2.4E-12 89.5 10.3 118 186-329 2-122 (194)
43 PRK06547 hypothetical protein; 98.7 9.3E-08 2E-12 91.2 9.7 142 180-355 12-159 (172)
44 PRK00279 adk adenylate kinase; 98.7 1.8E-07 4E-12 91.0 11.8 118 185-328 2-123 (215)
45 PLN02200 adenylate kinase fami 98.6 3.2E-07 6.9E-12 91.5 12.7 138 180-346 40-186 (234)
46 TIGR01351 adk adenylate kinase 98.6 1.8E-07 3.9E-12 90.7 10.5 115 186-328 2-120 (210)
47 KOG0635 Adenosine 5'-phosphosu 98.6 3.4E-07 7.4E-12 86.6 10.1 122 181-333 29-150 (207)
48 PRK01184 hypothetical protein; 98.6 3.5E-07 7.5E-12 86.4 10.1 38 184-228 2-39 (184)
49 PRK00131 aroK shikimate kinase 98.5 5.1E-07 1.1E-11 83.0 9.8 40 181-226 2-41 (175)
50 PRK02496 adk adenylate kinase; 98.5 7.2E-07 1.6E-11 84.4 10.9 137 185-347 3-147 (184)
51 COG0563 Adk Adenylate kinase a 98.5 1.1E-06 2.4E-11 84.5 12.2 137 185-346 2-146 (178)
52 PTZ00301 uridine kinase; Provi 98.5 1.3E-06 2.7E-11 86.2 12.6 46 182-227 2-48 (210)
53 PRK13946 shikimate kinase; Pro 98.5 8.9E-07 1.9E-11 84.4 10.9 128 182-347 9-147 (184)
54 PRK12337 2-phosphoglycerate ki 98.5 1.5E-06 3.2E-11 94.7 13.0 135 182-328 254-400 (475)
55 KOG1924 RhoA GTPase effector D 98.5 2.9E-07 6.3E-12 103.2 7.6 8 457-464 1043-1050(1102)
56 KOG3354 Gluconate kinase [Carb 98.4 5.1E-06 1.1E-10 79.0 14.0 156 174-359 3-172 (191)
57 PRK07261 topology modulation p 98.4 1E-06 2.2E-11 83.5 9.4 35 185-225 2-36 (171)
58 PRK08233 hypothetical protein; 98.4 2.4E-06 5.3E-11 79.5 11.4 38 183-225 3-40 (182)
59 PRK14528 adenylate kinase; Pro 98.4 2.5E-06 5.5E-11 81.7 11.5 138 185-347 3-151 (186)
60 cd00464 SK Shikimate kinase (S 98.4 1.9E-06 4.1E-11 78.1 9.9 35 186-226 2-36 (154)
61 PF00406 ADK: Adenylate kinase 98.4 2.2E-06 4.8E-11 78.6 10.5 132 188-346 1-136 (151)
62 PRK06217 hypothetical protein; 98.4 2E-06 4.3E-11 81.7 10.3 36 185-226 3-38 (183)
63 cd01672 TMPK Thymidine monopho 98.4 4.6E-06 9.9E-11 78.0 12.6 28 184-211 1-28 (200)
64 PRK00698 tmk thymidylate kinas 98.3 1.1E-05 2.4E-10 76.6 14.1 28 183-210 3-30 (205)
65 PRK14737 gmk guanylate kinase; 98.3 3E-06 6.5E-11 81.7 10.2 71 266-344 79-151 (186)
66 PRK05480 uridine/cytidine kina 98.3 4.2E-06 9.1E-11 80.8 11.0 44 180-226 3-46 (209)
67 PRK00625 shikimate kinase; Pro 98.3 3.1E-06 6.8E-11 80.9 9.6 36 185-226 2-37 (173)
68 PRK08118 topology modulation p 98.3 2.5E-06 5.4E-11 80.7 8.6 35 185-225 3-37 (167)
69 PRK08356 hypothetical protein; 98.3 8.4E-06 1.8E-10 78.4 12.3 38 182-226 4-41 (195)
70 PRK10078 ribose 1,5-bisphospho 98.3 3.7E-06 8E-11 80.1 9.7 62 273-343 81-144 (186)
71 PRK12338 hypothetical protein; 98.3 8.1E-06 1.8E-10 85.4 12.8 153 182-349 3-178 (319)
72 PRK14529 adenylate kinase; Pro 98.3 6.7E-06 1.4E-10 82.0 11.3 119 186-328 3-122 (223)
73 TIGR02322 phosphon_PhnN phosph 98.3 2.6E-06 5.7E-11 79.9 7.8 24 184-207 2-25 (179)
74 COG0572 Udk Uridine kinase [Nu 98.3 9.5E-06 2.1E-10 80.7 11.9 43 182-227 7-49 (218)
75 PRK05057 aroK shikimate kinase 98.2 1.1E-05 2.4E-10 76.5 11.9 37 183-225 4-40 (172)
76 PLN02674 adenylate kinase 98.2 5E-06 1.1E-10 83.9 9.9 120 183-328 31-154 (244)
77 PRK13808 adenylate kinase; Pro 98.2 7.6E-06 1.7E-10 86.0 11.5 119 186-328 3-123 (333)
78 PRK13948 shikimate kinase; Pro 98.2 5.5E-06 1.2E-10 80.0 9.6 41 181-227 8-48 (182)
79 TIGR03263 guanyl_kin guanylate 98.2 1.4E-06 3.1E-11 81.5 5.4 71 267-346 77-149 (180)
80 PTZ00088 adenylate kinase 1; P 98.2 8.9E-06 1.9E-10 81.2 11.2 39 184-228 7-45 (229)
81 PRK13947 shikimate kinase; Pro 98.2 5.5E-06 1.2E-10 76.9 9.1 35 186-226 4-38 (171)
82 PRK14530 adenylate kinase; Pro 98.2 1.1E-05 2.5E-10 78.5 11.2 38 185-228 5-42 (215)
83 PRK13949 shikimate kinase; Pro 98.2 8.5E-06 1.8E-10 77.3 9.7 36 185-226 3-38 (169)
84 cd02024 NRK1 Nicotinamide ribo 98.2 4.8E-06 1E-10 80.8 8.1 38 185-227 1-38 (187)
85 PRK03839 putative kinase; Prov 98.2 3.7E-06 8.1E-11 79.2 7.1 36 185-226 2-37 (180)
86 PF00485 PRK: Phosphoribulokin 98.2 3E-06 6.6E-11 81.2 6.6 42 185-226 1-45 (194)
87 PRK04040 adenylate kinase; Pro 98.2 1.6E-05 3.4E-10 76.9 11.4 41 183-227 2-42 (188)
88 COG0194 Gmk Guanylate kinase [ 98.2 1.2E-06 2.7E-11 85.0 3.7 158 182-369 3-172 (191)
89 cd02028 UMPK_like Uridine mono 98.2 1.1E-05 2.5E-10 77.0 10.2 42 185-227 1-42 (179)
90 PRK00300 gmk guanylate kinase; 98.2 4.1E-06 8.9E-11 80.1 7.0 27 181-207 3-29 (205)
91 PF13207 AAA_17: AAA domain; P 98.1 1.6E-06 3.4E-11 75.8 3.3 34 185-224 1-34 (121)
92 TIGR00041 DTMP_kinase thymidyl 98.1 6.6E-05 1.4E-09 71.2 14.7 28 183-210 3-30 (195)
93 PLN02348 phosphoribulokinase 98.1 1.3E-05 2.8E-10 85.9 10.5 45 181-225 47-105 (395)
94 TIGR02173 cyt_kin_arch cytidyl 98.1 8.3E-06 1.8E-10 75.2 8.0 38 184-227 1-38 (171)
95 PRK04182 cytidylate kinase; Pr 98.1 5.8E-06 1.3E-10 76.7 6.2 37 184-226 1-37 (180)
96 COG4185 Uncharacterized protei 98.1 1.7E-05 3.7E-10 75.8 9.0 129 183-345 2-137 (187)
97 PRK09270 nucleoside triphospha 98.1 3.6E-05 7.9E-10 75.8 11.6 46 180-226 30-76 (229)
98 COG0703 AroK Shikimate kinase 98.1 3.6E-05 7.8E-10 74.1 11.0 108 185-330 4-113 (172)
99 cd02025 PanK Pantothenate kina 98.0 1.3E-05 2.9E-10 79.1 8.3 43 185-227 1-44 (220)
100 cd02020 CMPK Cytidine monophos 98.0 1.7E-05 3.8E-10 71.0 8.1 32 185-222 1-32 (147)
101 PF08303 tRNA_lig_kinase: tRNA 98.0 4.5E-05 9.9E-10 73.0 11.0 122 185-350 1-151 (168)
102 TIGR00235 udk uridine kinase. 98.0 5E-05 1.1E-09 73.6 11.7 44 180-226 3-46 (207)
103 smart00072 GuKc Guanylate kina 98.0 5.4E-06 1.2E-10 79.0 4.8 70 266-344 78-149 (184)
104 PRK13973 thymidylate kinase; P 98.0 6.3E-05 1.4E-09 73.5 12.0 29 183-211 3-31 (213)
105 COG1102 Cmk Cytidylate kinase 98.0 2.5E-05 5.4E-10 74.8 8.8 39 184-228 1-39 (179)
106 PRK14738 gmk guanylate kinase; 98.0 8.4E-06 1.8E-10 79.4 5.7 26 181-206 11-36 (206)
107 PRK08154 anaerobic benzoate ca 98.0 2.4E-05 5.2E-10 81.0 8.9 39 181-225 131-169 (309)
108 KOG4238 Bifunctional ATP sulfu 98.0 1.1E-05 2.3E-10 85.2 6.0 124 181-333 48-171 (627)
109 PRK14526 adenylate kinase; Pro 98.0 4.1E-05 8.8E-10 75.5 9.7 37 186-228 3-39 (211)
110 PRK04220 2-phosphoglycerate ki 97.9 8.7E-05 1.9E-09 77.2 12.4 133 181-327 90-230 (301)
111 PRK03731 aroL shikimate kinase 97.9 4.8E-05 1E-09 70.9 9.5 36 185-226 4-39 (171)
112 PRK05416 glmZ(sRNA)-inactivati 97.9 7.3E-05 1.6E-09 77.2 11.6 43 285-328 59-102 (288)
113 cd01673 dNK Deoxyribonucleosid 97.9 0.00014 3.1E-09 69.0 12.3 22 185-206 1-22 (193)
114 PLN02459 probable adenylate ki 97.9 8.2E-05 1.8E-09 75.9 11.0 41 182-228 28-68 (261)
115 TIGR00152 dephospho-CoA kinase 97.9 4.6E-05 9.9E-10 72.7 8.6 37 185-227 1-37 (188)
116 PF00625 Guanylate_kin: Guanyl 97.8 6.1E-06 1.3E-10 78.3 1.6 25 183-207 2-26 (183)
117 PRK14730 coaE dephospho-CoA ki 97.8 0.00012 2.6E-09 71.1 10.1 38 184-227 2-39 (195)
118 cd02022 DPCK Dephospho-coenzym 97.8 6.4E-05 1.4E-09 71.4 8.0 36 185-227 1-36 (179)
119 PLN02924 thymidylate kinase 97.8 0.00024 5.3E-09 70.5 12.3 31 181-211 14-44 (220)
120 COG3265 GntK Gluconate kinase 97.8 0.00017 3.8E-09 68.2 9.9 126 190-349 2-132 (161)
121 PF00448 SRP54: SRP54-type pro 97.8 0.00013 2.8E-09 71.2 9.4 44 183-227 1-44 (196)
122 KOG3079 Uridylate kinase/adeny 97.8 0.00012 2.7E-09 71.2 9.0 140 182-347 7-153 (195)
123 PRK13951 bifunctional shikimat 97.7 0.0002 4.3E-09 79.0 11.2 36 185-226 2-37 (488)
124 PRK14021 bifunctional shikimat 97.7 0.00033 7.2E-09 78.0 12.7 113 183-329 6-120 (542)
125 PRK07429 phosphoribulokinase; 97.7 0.00037 8.1E-09 73.2 12.3 41 181-224 6-46 (327)
126 PRK10867 signal recognition pa 97.7 0.00033 7.2E-09 76.2 12.1 47 180-226 97-143 (433)
127 cd01120 RecA-like_NTPases RecA 97.7 0.00011 2.3E-09 65.8 6.8 38 185-223 1-38 (165)
128 cd03115 SRP The signal recogni 97.7 0.00035 7.7E-09 65.3 10.6 39 185-224 2-40 (173)
129 PRK13975 thymidylate kinase; P 97.6 0.00038 8.3E-09 66.0 10.4 24 184-207 3-26 (196)
130 PLN02772 guanylate kinase 97.6 0.00013 2.9E-09 78.3 8.0 73 265-346 210-284 (398)
131 TIGR01425 SRP54_euk signal rec 97.6 0.00035 7.6E-09 75.9 11.3 44 181-225 98-141 (429)
132 COG0541 Ffh Signal recognition 97.6 0.00036 7.8E-09 75.5 11.1 113 180-309 97-212 (451)
133 PRK13974 thymidylate kinase; P 97.6 0.0016 3.4E-08 63.7 14.8 27 183-209 3-29 (212)
134 PRK00081 coaE dephospho-CoA ki 97.6 0.00029 6.4E-09 68.0 9.4 37 184-227 3-39 (194)
135 PRK13976 thymidylate kinase; P 97.6 0.0022 4.8E-08 63.1 15.7 27 184-210 1-27 (209)
136 PRK05439 pantothenate kinase; 97.6 9.5E-05 2.1E-09 77.2 6.0 48 180-227 83-131 (311)
137 PF00004 AAA: ATPase family as 97.6 0.00019 4.1E-09 62.6 7.0 22 186-207 1-22 (132)
138 TIGR00959 ffh signal recogniti 97.6 0.0005 1.1E-08 74.7 11.6 45 181-225 97-141 (428)
139 PRK14086 dnaA chromosomal repl 97.6 0.0073 1.6E-07 68.5 20.9 39 186-224 317-356 (617)
140 cd00071 GMPK Guanosine monopho 97.5 4.4E-05 9.6E-10 69.9 2.5 23 185-207 1-23 (137)
141 PLN02199 shikimate kinase 97.5 0.0003 6.5E-09 73.2 8.8 38 184-227 103-140 (303)
142 PRK14731 coaE dephospho-CoA ki 97.5 0.00047 1E-08 67.4 9.5 40 180-226 2-41 (208)
143 cd02023 UMPK Uridine monophosp 97.5 9.1E-05 2E-09 70.9 4.4 39 185-226 1-39 (198)
144 cd02030 NDUO42 NADH:Ubiquinone 97.5 0.0017 3.7E-08 63.8 13.2 23 185-207 1-23 (219)
145 PLN02318 phosphoribulokinase/u 97.5 0.00055 1.2E-08 77.1 10.7 40 181-225 63-102 (656)
146 COG0237 CoaE Dephospho-CoA kin 97.5 0.0015 3.3E-08 64.3 12.4 38 183-227 2-39 (201)
147 KOG3308 Uncharacterized protei 97.5 0.00075 1.6E-08 66.8 10.1 43 182-229 3-45 (225)
148 PRK00771 signal recognition pa 97.5 0.00053 1.1E-08 74.8 10.1 44 181-225 93-136 (437)
149 PRK14733 coaE dephospho-CoA ki 97.5 0.00081 1.8E-08 66.3 10.3 40 182-227 5-44 (204)
150 PRK04296 thymidine kinase; Pro 97.4 0.0013 2.7E-08 63.5 11.2 110 184-318 3-115 (190)
151 PRK14734 coaE dephospho-CoA ki 97.4 0.00068 1.5E-08 66.1 9.4 37 184-227 2-38 (200)
152 PRK14732 coaE dephospho-CoA ki 97.4 0.00052 1.1E-08 66.9 8.3 36 185-227 1-36 (196)
153 PRK12724 flagellar biosynthesi 97.4 0.0014 3E-08 71.3 12.3 44 182-225 222-265 (432)
154 PLN02842 nucleotide kinase 97.4 0.00065 1.4E-08 75.2 9.2 36 187-228 1-36 (505)
155 PRK14974 cell division protein 97.3 0.0016 3.5E-08 68.8 11.4 42 182-224 139-180 (336)
156 PF13238 AAA_18: AAA domain; P 97.3 0.00017 3.7E-09 62.7 3.4 22 186-207 1-22 (129)
157 PRK06761 hypothetical protein; 97.3 0.0025 5.4E-08 65.9 12.2 26 183-208 3-28 (282)
158 cd01394 radB RadB. The archaea 97.3 0.0015 3.3E-08 63.3 10.0 41 181-222 17-57 (218)
159 cd00984 DnaB_C DnaB helicase C 97.3 0.00096 2.1E-08 65.4 8.7 41 182-222 12-52 (242)
160 TIGR00554 panK_bact pantothena 97.3 0.00039 8.3E-09 72.0 6.1 48 180-227 59-107 (290)
161 PF01121 CoaE: Dephospho-CoA k 97.2 0.00071 1.5E-08 65.3 6.9 37 184-227 1-37 (180)
162 PRK15453 phosphoribulokinase; 97.2 0.00045 9.7E-09 71.5 5.7 44 181-225 3-46 (290)
163 PLN02422 dephospho-CoA kinase 97.2 0.0014 3E-08 66.0 9.1 37 185-228 3-39 (232)
164 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0036 7.8E-08 62.2 12.0 40 182-222 20-59 (237)
165 TIGR02237 recomb_radB DNA repa 97.2 0.0027 5.9E-08 61.0 10.7 41 181-222 10-50 (209)
166 cd02019 NK Nucleoside/nucleoti 97.2 0.00028 6E-09 57.3 3.1 23 185-207 1-23 (69)
167 PF03668 ATP_bind_2: P-loop AT 97.2 0.0028 6E-08 65.6 10.9 76 285-361 55-142 (284)
168 TIGR00064 ftsY signal recognit 97.2 0.0031 6.7E-08 64.6 11.2 45 180-225 69-113 (272)
169 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0059 1.3E-07 61.8 12.5 40 181-221 34-73 (259)
170 PRK11889 flhF flagellar biosyn 97.1 0.012 2.6E-07 64.0 15.1 44 181-225 239-282 (436)
171 PF13401 AAA_22: AAA domain; P 97.1 0.0012 2.7E-08 58.0 6.5 27 182-208 3-29 (131)
172 PRK09361 radB DNA repair and r 97.1 0.0036 7.8E-08 61.1 10.1 49 168-221 12-60 (225)
173 PRK07933 thymidylate kinase; V 97.1 0.0044 9.4E-08 61.0 10.7 28 184-211 1-28 (213)
174 PHA00729 NTP-binding motif con 97.1 0.0031 6.8E-08 63.3 9.7 24 184-207 18-41 (226)
175 PLN02165 adenylate isopentenyl 97.1 0.0064 1.4E-07 64.3 12.4 36 182-223 42-77 (334)
176 PF05729 NACHT: NACHT domain 97.1 0.011 2.3E-07 53.4 12.3 26 185-210 2-27 (166)
177 COG0125 Tmk Thymidylate kinase 97.0 0.0058 1.3E-07 60.5 11.3 30 182-211 2-31 (208)
178 TIGR02881 spore_V_K stage V sp 97.0 0.0088 1.9E-07 60.2 12.9 30 180-209 39-68 (261)
179 PRK05703 flhF flagellar biosyn 97.0 0.0042 9E-08 67.5 11.0 43 183-225 221-264 (424)
180 cd01124 KaiC KaiC is a circadi 97.0 0.0058 1.3E-07 57.1 10.6 37 185-222 1-37 (187)
181 PRK00091 miaA tRNA delta(2)-is 97.0 0.0025 5.4E-08 66.5 8.8 36 182-223 3-38 (307)
182 PF13173 AAA_14: AAA domain 97.0 0.0034 7.3E-08 56.3 8.5 25 183-207 2-26 (128)
183 TIGR02012 tigrfam_recA protein 97.0 0.0039 8.5E-08 65.6 10.1 32 181-212 53-84 (321)
184 PF13481 AAA_25: AAA domain; P 97.0 0.0079 1.7E-07 56.7 11.1 27 182-208 31-57 (193)
185 cd02029 PRK_like Phosphoribulo 97.0 0.00088 1.9E-08 68.9 4.8 40 185-225 1-40 (277)
186 cd00009 AAA The AAA+ (ATPases 97.0 0.01 2.3E-07 51.1 10.8 26 183-208 19-44 (151)
187 PRK06067 flagellar accessory p 97.0 0.011 2.4E-07 58.1 12.4 41 181-222 23-63 (234)
188 PF01202 SKI: Shikimate kinase 97.0 0.0016 3.4E-08 60.7 6.0 30 192-227 1-30 (158)
189 PF02223 Thymidylate_kin: Thym 96.9 0.017 3.7E-07 54.6 13.1 24 188-211 1-24 (186)
190 CHL00181 cbbX CbbX; Provisiona 96.9 0.014 3.1E-07 60.2 13.4 28 183-210 59-86 (287)
191 KOG3347 Predicted nucleotide k 96.9 0.0034 7.4E-08 59.8 8.0 37 185-227 9-45 (176)
192 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0092 2E-07 58.2 11.5 25 182-206 18-42 (235)
193 PF04665 Pox_A32: Poxvirus A32 96.9 0.02 4.4E-07 58.0 14.0 25 184-208 14-38 (241)
194 cd01393 recA_like RecA is a b 96.9 0.007 1.5E-07 58.7 10.4 26 182-207 18-43 (226)
195 cd00983 recA RecA is a bacter 96.9 0.0047 1E-07 65.1 9.7 32 181-212 53-84 (325)
196 TIGR02880 cbbX_cfxQ probable R 96.9 0.0088 1.9E-07 61.4 11.5 28 183-210 58-85 (284)
197 PRK06893 DNA replication initi 96.9 0.011 2.5E-07 58.5 11.8 27 185-211 41-67 (229)
198 PRK12726 flagellar biosynthesi 96.9 0.018 4E-07 62.2 14.0 44 181-225 204-247 (407)
199 PLN02796 D-glycerate 3-kinase 96.9 0.0013 2.8E-08 69.8 5.3 46 181-227 98-143 (347)
200 PRK10416 signal recognition pa 96.9 0.01 2.3E-07 62.2 11.9 43 181-224 112-154 (318)
201 PRK12723 flagellar biosynthesi 96.8 0.015 3.3E-07 62.6 13.2 46 181-226 172-220 (388)
202 KOG0780 Signal recognition par 96.8 0.0071 1.5E-07 65.0 10.4 131 179-327 97-231 (483)
203 PHA03132 thymidine kinase; Pro 96.8 0.12 2.6E-06 58.5 20.5 26 182-207 256-281 (580)
204 cd01122 GP4d_helicase GP4d_hel 96.8 0.0073 1.6E-07 60.4 9.9 39 183-221 30-68 (271)
205 PLN03046 D-glycerate 3-kinase; 96.8 0.0016 3.4E-08 70.9 5.3 45 181-226 210-254 (460)
206 PRK08084 DNA replication initi 96.8 0.013 2.7E-07 58.4 11.4 26 185-210 47-72 (235)
207 COG1936 Predicted nucleotide k 96.8 0.0052 1.1E-07 59.6 8.2 22 184-205 1-22 (180)
208 PTZ00451 dephospho-CoA kinase; 96.8 0.0099 2.1E-07 60.3 10.7 38 184-227 2-39 (244)
209 KOG3671 Actin regulatory prote 96.8 0.012 2.5E-07 64.6 11.7 20 186-205 484-504 (569)
210 cd01131 PilT Pilus retraction 96.8 0.025 5.4E-07 54.9 13.0 24 185-208 3-26 (198)
211 PRK14956 DNA polymerase III su 96.8 0.012 2.6E-07 65.0 12.0 67 279-346 118-193 (484)
212 smart00382 AAA ATPases associa 96.7 0.00095 2.1E-08 56.7 2.7 24 184-207 3-26 (148)
213 PF06745 KaiC: KaiC; InterPro 96.7 0.007 1.5E-07 59.1 8.9 38 182-219 18-55 (226)
214 PRK07003 DNA polymerase III su 96.7 0.011 2.4E-07 68.4 11.7 65 280-345 117-190 (830)
215 TIGR03499 FlhF flagellar biosy 96.7 0.0022 4.9E-08 65.7 5.6 45 181-225 192-237 (282)
216 PRK12323 DNA polymerase III su 96.7 0.015 3.3E-07 66.4 12.6 66 279-345 121-195 (700)
217 PLN00020 ribulose bisphosphate 96.7 0.0043 9.4E-08 66.7 7.7 40 181-224 146-185 (413)
218 PRK05800 cobU adenosylcobinami 96.7 0.0067 1.5E-07 57.9 8.3 22 185-206 3-24 (170)
219 TIGR00416 sms DNA repair prote 96.7 0.0053 1.2E-07 67.3 8.5 30 182-211 93-122 (454)
220 PRK04328 hypothetical protein; 96.7 0.021 4.4E-07 57.5 12.0 49 168-221 12-60 (249)
221 COG2074 2-phosphoglycerate kin 96.7 0.01 2.2E-07 60.8 9.6 41 180-225 86-126 (299)
222 PRK12377 putative replication 96.7 0.0058 1.3E-07 62.0 8.0 38 184-222 102-139 (248)
223 PF13604 AAA_30: AAA domain; P 96.7 0.016 3.5E-07 56.2 10.7 26 185-210 20-45 (196)
224 PLN02840 tRNA dimethylallyltra 96.7 0.0074 1.6E-07 65.6 9.2 45 173-223 11-55 (421)
225 COG1660 Predicted P-loop-conta 96.6 0.015 3.3E-07 59.7 10.7 76 285-361 55-143 (286)
226 PRK14960 DNA polymerase III su 96.6 0.021 4.5E-07 65.5 12.9 25 183-207 37-61 (702)
227 PRK05973 replicative DNA helic 96.6 0.0078 1.7E-07 60.8 8.5 39 182-221 63-101 (237)
228 cd01121 Sms Sms (bacterial rad 96.6 0.0051 1.1E-07 65.9 7.5 28 183-210 82-109 (372)
229 TIGR03880 KaiC_arch_3 KaiC dom 96.6 0.024 5.3E-07 55.3 11.7 40 182-222 15-54 (224)
230 cd02026 PRK Phosphoribulokinas 96.6 0.0023 5E-08 65.5 4.4 38 185-225 1-38 (273)
231 PRK14949 DNA polymerase III su 96.6 0.018 3.9E-07 67.8 12.1 67 279-346 116-191 (944)
232 KOG0744 AAA+-type ATPase [Post 96.6 0.008 1.7E-07 63.5 8.3 24 184-207 178-201 (423)
233 PRK14958 DNA polymerase III su 96.5 0.017 3.8E-07 64.2 11.5 67 278-345 115-190 (509)
234 COG4240 Predicted kinase [Gene 96.5 0.0029 6.2E-08 64.0 4.8 51 179-229 46-96 (300)
235 PRK09354 recA recombinase A; P 96.5 0.013 2.9E-07 62.3 10.0 32 181-212 58-89 (349)
236 PRK14722 flhF flagellar biosyn 96.5 0.0081 1.7E-07 64.5 8.1 45 181-225 135-180 (374)
237 COG3896 Chloramphenicol 3-O-ph 96.5 0.021 4.5E-07 55.1 9.8 136 180-329 20-157 (205)
238 TIGR03015 pepcterm_ATPase puta 96.5 0.013 2.8E-07 58.2 8.9 25 183-207 43-67 (269)
239 PRK08116 hypothetical protein; 96.5 0.015 3.3E-07 59.3 9.5 38 184-222 115-152 (268)
240 PRK13477 bifunctional pantoate 96.4 0.0028 6.1E-08 70.5 4.5 40 182-227 283-322 (512)
241 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0025 5.5E-08 67.9 3.9 29 180-208 75-103 (361)
242 PRK03333 coaE dephospho-CoA ki 96.4 0.0089 1.9E-07 64.3 8.0 37 184-227 2-38 (395)
243 PRK05642 DNA replication initi 96.4 0.018 3.9E-07 57.4 9.6 39 184-223 46-84 (234)
244 PF03796 DnaB_C: DnaB-like hel 96.4 0.019 4.2E-07 57.4 9.8 119 183-318 19-137 (259)
245 TIGR00017 cmk cytidylate kinas 96.4 0.003 6.5E-08 62.6 4.0 38 183-226 2-39 (217)
246 PRK14963 DNA polymerase III su 96.4 0.044 9.6E-07 61.0 13.4 27 182-208 35-61 (504)
247 PRK06731 flhF flagellar biosyn 96.4 0.052 1.1E-06 55.8 13.0 42 182-224 74-115 (270)
248 cd04163 Era Era subfamily. Er 96.4 0.051 1.1E-06 48.0 11.4 23 183-205 3-25 (168)
249 COG2019 AdkA Archaeal adenylat 96.4 0.0073 1.6E-07 58.5 6.1 40 183-227 4-43 (189)
250 PF03205 MobB: Molybdopterin g 96.3 0.0053 1.1E-07 56.9 4.8 28 185-212 2-29 (140)
251 TIGR02655 circ_KaiC circadian 96.3 0.034 7.3E-07 61.3 11.8 39 182-220 20-58 (484)
252 PRK09435 membrane ATPase/prote 96.3 0.0063 1.4E-07 64.3 5.7 41 181-222 54-94 (332)
253 PRK08181 transposase; Validate 96.3 0.011 2.4E-07 60.7 7.3 27 185-211 108-134 (269)
254 TIGR02655 circ_KaiC circadian 96.3 0.021 4.6E-07 62.9 10.0 40 182-222 262-301 (484)
255 PRK13342 recombination factor 96.3 0.043 9.4E-07 59.1 12.1 23 185-207 38-60 (413)
256 PRK06921 hypothetical protein; 96.3 0.015 3.2E-07 59.4 8.1 28 183-210 117-144 (266)
257 PRK08006 replicative DNA helic 96.2 0.038 8.2E-07 61.0 11.8 119 182-316 223-343 (471)
258 TIGR00665 DnaB replicative DNA 96.2 0.041 8.9E-07 59.3 11.9 40 182-221 194-233 (434)
259 PTZ00454 26S protease regulato 96.2 0.019 4.1E-07 62.0 9.3 25 182-206 178-202 (398)
260 PRK11823 DNA repair protein Ra 96.2 0.01 2.2E-07 64.9 7.3 29 183-211 80-108 (446)
261 PF07728 AAA_5: AAA domain (dy 96.2 0.0038 8.3E-08 56.1 3.4 22 186-207 2-23 (139)
262 PRK14952 DNA polymerase III su 96.2 0.083 1.8E-06 59.9 14.6 64 281-345 117-189 (584)
263 COG0467 RAD55 RecA-superfamily 96.2 0.022 4.7E-07 57.2 9.0 30 181-210 21-50 (260)
264 PRK13695 putative NTPase; Prov 96.2 0.046 9.9E-07 51.4 10.7 25 185-209 2-26 (174)
265 PTZ00361 26 proteosome regulat 96.2 0.021 4.5E-07 62.5 9.5 26 182-207 216-241 (438)
266 PRK00023 cmk cytidylate kinase 96.2 0.0041 8.9E-08 61.8 3.7 38 183-226 4-41 (225)
267 PF00931 NB-ARC: NB-ARC domain 96.2 0.0095 2.1E-07 59.4 6.2 26 181-206 17-42 (287)
268 KOG1533 Predicted GTPase [Gene 96.2 0.016 3.4E-07 59.0 7.6 37 184-221 3-39 (290)
269 PRK07994 DNA polymerase III su 96.2 0.03 6.4E-07 64.1 10.8 65 279-344 116-189 (647)
270 PRK00149 dnaA chromosomal repl 96.1 0.032 7E-07 60.6 10.6 26 185-210 150-175 (450)
271 TIGR00174 miaA tRNA isopenteny 96.1 0.0094 2E-07 61.8 6.1 33 185-223 1-33 (287)
272 PRK06526 transposase; Provisio 96.1 0.02 4.3E-07 58.2 8.3 28 183-210 98-125 (254)
273 PRK14951 DNA polymerase III su 96.1 0.063 1.4E-06 61.2 13.0 26 182-207 37-62 (618)
274 PRK08533 flagellar accessory p 96.1 0.087 1.9E-06 52.5 12.7 39 182-221 23-61 (230)
275 PRK14957 DNA polymerase III su 96.1 0.052 1.1E-06 61.0 12.2 65 279-344 116-189 (546)
276 PF03029 ATP_bind_1: Conserved 96.1 0.004 8.7E-08 62.6 3.1 34 188-222 1-34 (238)
277 PRK04195 replication factor C 96.1 0.025 5.4E-07 62.2 9.5 25 183-207 39-63 (482)
278 PRK06995 flhF flagellar biosyn 96.1 0.034 7.3E-07 61.7 10.5 44 182-225 255-299 (484)
279 PRK05636 replicative DNA helic 96.1 0.039 8.4E-07 61.4 11.0 119 181-316 263-382 (505)
280 PRK08939 primosomal protein Dn 96.1 0.041 8.8E-07 57.4 10.6 40 183-223 156-195 (306)
281 PRK08691 DNA polymerase III su 96.1 0.088 1.9E-06 60.7 14.0 25 183-207 38-62 (709)
282 TIGR00362 DnaA chromosomal rep 96.1 0.076 1.6E-06 56.8 12.8 26 185-210 138-163 (405)
283 PTZ00035 Rad51 protein; Provis 96.1 0.025 5.3E-07 59.8 8.9 25 182-206 117-141 (337)
284 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.034 7.4E-07 54.3 9.3 29 182-210 19-47 (229)
285 PRK14969 DNA polymerase III su 96.1 0.082 1.8E-06 59.1 13.4 64 280-344 117-189 (527)
286 PRK08727 hypothetical protein; 96.0 0.045 9.7E-07 54.5 10.2 26 185-210 43-68 (233)
287 PF05496 RuvB_N: Holliday junc 96.0 0.034 7.4E-07 56.2 9.2 22 185-206 52-73 (233)
288 PRK10751 molybdopterin-guanine 96.0 0.0086 1.9E-07 57.8 4.9 28 182-209 5-32 (173)
289 KOG3220 Similar to bacterial d 96.0 0.041 8.9E-07 54.8 9.5 136 184-341 2-157 (225)
290 COG2256 MGS1 ATPase related to 96.0 0.052 1.1E-06 58.8 11.0 24 183-206 48-71 (436)
291 PRK14088 dnaA chromosomal repl 96.0 0.029 6.2E-07 61.3 9.3 25 186-210 133-157 (440)
292 PRK14723 flhF flagellar biosyn 96.0 0.055 1.2E-06 62.9 11.8 44 182-225 184-228 (767)
293 TIGR03689 pup_AAA proteasome A 96.0 0.017 3.6E-07 64.5 7.4 26 182-207 215-240 (512)
294 TIGR02788 VirB11 P-type DNA tr 96.0 0.04 8.6E-07 57.2 9.8 26 182-207 143-168 (308)
295 PRK09087 hypothetical protein; 96.0 0.079 1.7E-06 52.8 11.5 22 185-206 46-67 (226)
296 PF13191 AAA_16: AAA ATPase do 96.0 0.0081 1.8E-07 55.5 4.2 34 177-210 18-51 (185)
297 PRK03992 proteasome-activating 96.0 0.014 3.1E-07 62.5 6.6 26 182-207 164-189 (389)
298 PRK07764 DNA polymerase III su 95.9 0.074 1.6E-06 62.5 12.9 64 281-345 119-191 (824)
299 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.081 1.8E-06 48.7 10.8 92 182-310 25-118 (144)
300 PRK09302 circadian clock prote 95.9 0.057 1.2E-06 59.6 11.4 51 168-222 20-70 (509)
301 PLN02748 tRNA dimethylallyltra 95.9 0.02 4.3E-07 63.2 7.7 37 180-222 19-55 (468)
302 TIGR03598 GTPase_YsxC ribosome 95.9 0.053 1.1E-06 50.9 9.5 25 181-205 16-40 (179)
303 PF13521 AAA_28: AAA domain; P 95.9 0.0063 1.4E-07 56.4 3.2 21 186-206 2-22 (163)
304 PRK12727 flagellar biosynthesi 95.9 0.029 6.2E-07 62.9 8.8 44 182-225 349-393 (559)
305 PRK06835 DNA replication prote 95.9 0.04 8.6E-07 58.2 9.4 40 184-224 184-223 (329)
306 COG1419 FlhF Flagellar GTP-bin 95.9 0.14 3.1E-06 55.5 13.7 47 182-228 202-249 (407)
307 cd01983 Fer4_NifH The Fer4_Nif 95.9 0.015 3.3E-07 47.2 5.0 40 185-227 1-40 (99)
308 PHA02544 44 clamp loader, smal 95.9 0.081 1.7E-06 54.1 11.4 26 182-207 42-67 (316)
309 PRK04301 radA DNA repair and r 95.8 0.097 2.1E-06 54.4 12.0 25 182-206 101-125 (317)
310 cd03216 ABC_Carb_Monos_I This 95.8 0.044 9.5E-07 51.3 8.6 25 182-206 25-49 (163)
311 PLN03187 meiotic recombination 95.8 0.046 1E-06 58.1 9.7 34 168-205 115-148 (344)
312 PRK09183 transposase/IS protei 95.8 0.027 5.9E-07 57.2 7.7 29 182-210 101-129 (259)
313 COG5192 BMS1 GTP-binding prote 95.8 0.064 1.4E-06 60.1 10.9 100 180-312 66-165 (1077)
314 TIGR01420 pilT_fam pilus retra 95.8 0.12 2.5E-06 54.6 12.5 27 182-208 121-147 (343)
315 TIGR00750 lao LAO/AO transport 95.8 0.014 3E-07 60.3 5.5 42 181-223 32-73 (300)
316 COG1855 ATPase (PilT family) [ 95.8 0.0079 1.7E-07 65.8 3.7 29 183-211 263-291 (604)
317 TIGR00436 era GTP-binding prot 95.8 0.11 2.4E-06 52.5 11.9 49 270-319 69-117 (270)
318 PF13245 AAA_19: Part of AAA d 95.8 0.01 2.2E-07 49.6 3.6 24 185-208 12-35 (76)
319 TIGR02238 recomb_DMC1 meiotic 95.8 0.1 2.2E-06 54.7 11.8 34 168-205 85-118 (313)
320 COG1618 Predicted nucleotide k 95.8 0.0093 2E-07 57.5 3.7 29 183-211 5-33 (179)
321 cd03223 ABCD_peroxisomal_ALDP 95.7 0.058 1.3E-06 50.6 9.1 26 182-207 26-51 (166)
322 COG1484 DnaC DNA replication p 95.7 0.032 7E-07 56.6 7.8 39 182-221 104-142 (254)
323 cd01876 YihA_EngB The YihA (En 95.7 0.061 1.3E-06 47.8 8.7 19 186-204 2-20 (170)
324 KOG1969 DNA replication checkp 95.7 0.0092 2E-07 68.3 4.1 44 178-225 321-364 (877)
325 PRK13768 GTPase; Provisional 95.7 0.016 3.5E-07 58.5 5.4 38 183-221 2-39 (253)
326 PRK00089 era GTPase Era; Revie 95.7 0.16 3.4E-06 51.6 12.5 23 182-204 4-26 (292)
327 TIGR03600 phage_DnaB phage rep 95.7 0.065 1.4E-06 57.7 10.2 40 182-221 193-232 (421)
328 cd03222 ABC_RNaseL_inhibitor T 95.7 0.077 1.7E-06 51.1 9.7 25 182-206 24-48 (177)
329 KOG0739 AAA+-type ATPase [Post 95.6 0.018 4E-07 60.4 5.7 23 184-206 167-189 (439)
330 cd01895 EngA2 EngA2 subfamily. 95.6 0.13 2.8E-06 46.1 10.5 35 285-319 89-123 (174)
331 PRK09519 recA DNA recombinatio 95.6 0.06 1.3E-06 62.8 10.4 31 182-212 59-89 (790)
332 TIGR02239 recomb_RAD51 DNA rep 95.6 0.064 1.4E-06 56.2 9.6 35 167-205 84-118 (316)
333 PRK14962 DNA polymerase III su 95.6 0.13 2.7E-06 57.0 12.2 25 183-207 36-60 (472)
334 cd01129 PulE-GspE PulE/GspE Th 95.6 0.16 3.5E-06 51.8 12.2 26 182-207 79-104 (264)
335 TIGR00150 HI0065_YjeE ATPase, 95.6 0.011 2.3E-07 54.9 3.3 25 183-207 22-46 (133)
336 TIGR01242 26Sp45 26S proteasom 95.6 0.02 4.4E-07 60.4 5.8 24 183-206 156-179 (364)
337 CHL00195 ycf46 Ycf46; Provisio 95.6 0.032 7E-07 61.8 7.6 27 181-207 257-283 (489)
338 PRK14721 flhF flagellar biosyn 95.6 0.11 2.4E-06 56.8 11.4 46 181-226 189-235 (420)
339 PRK08099 bifunctional DNA-bind 95.5 0.026 5.7E-07 61.0 6.7 28 180-207 216-243 (399)
340 PLN03025 replication factor C 95.5 0.076 1.6E-06 55.1 9.9 22 186-207 37-58 (319)
341 PRK08760 replicative DNA helic 95.5 0.11 2.3E-06 57.5 11.4 42 181-222 227-268 (476)
342 TIGR00176 mobB molybdopterin-g 95.5 0.013 2.9E-07 55.1 3.7 27 185-211 1-27 (155)
343 cd03114 ArgK-like The function 95.5 0.016 3.5E-07 53.9 4.3 36 185-221 1-36 (148)
344 COG2805 PilT Tfp pilus assembl 95.5 0.13 2.8E-06 54.1 11.1 140 167-335 107-248 (353)
345 PF03266 NTPase_1: NTPase; In 95.5 0.014 3.1E-07 55.6 3.9 25 186-210 2-26 (168)
346 PRK05748 replicative DNA helic 95.4 0.12 2.5E-06 56.4 11.2 40 182-221 202-241 (448)
347 PF02492 cobW: CobW/HypB/UreG, 95.4 0.023 4.9E-07 54.1 5.0 21 185-205 2-22 (178)
348 PRK06645 DNA polymerase III su 95.4 0.21 4.5E-06 55.9 13.0 25 183-207 43-67 (507)
349 PRK08840 replicative DNA helic 95.4 0.13 2.8E-06 56.7 11.4 40 182-221 216-255 (464)
350 COG1126 GlnQ ABC-type polar am 95.4 0.012 2.6E-07 59.2 3.0 27 181-207 26-52 (240)
351 cd01918 HprK_C HprK/P, the bif 95.3 0.022 4.7E-07 53.9 4.6 24 183-206 14-37 (149)
352 KOG1532 GTPase XAB1, interacts 95.3 0.021 4.7E-07 59.2 4.9 45 180-225 16-60 (366)
353 TIGR01650 PD_CobS cobaltochela 95.3 0.02 4.3E-07 60.5 4.8 23 185-207 66-88 (327)
354 COG1072 CoaA Panthothenate kin 95.3 0.029 6.2E-07 58.0 5.7 47 178-224 77-124 (283)
355 KOG3671 Actin regulatory prote 95.3 0.051 1.1E-06 59.7 7.9 14 23-37 253-266 (569)
356 PRK14959 DNA polymerase III su 95.3 0.23 5E-06 56.8 13.4 25 183-207 38-62 (624)
357 PRK14490 putative bifunctional 95.3 0.017 3.6E-07 61.5 4.1 29 181-209 3-31 (369)
358 cd01882 BMS1 Bms1. Bms1 is an 95.3 0.13 2.8E-06 50.9 10.1 26 181-206 37-62 (225)
359 PF00910 RNA_helicase: RNA hel 95.3 0.015 3.3E-07 50.9 3.2 24 186-209 1-24 (107)
360 PRK14964 DNA polymerase III su 95.3 0.12 2.7E-06 57.4 10.9 25 183-207 35-59 (491)
361 cd03116 MobB Molybdenum is an 95.2 0.024 5.3E-07 53.7 4.6 27 184-210 2-28 (159)
362 PRK07004 replicative DNA helic 95.2 0.12 2.6E-06 56.9 10.6 40 182-221 212-251 (460)
363 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.023 5E-07 54.9 4.5 28 182-209 37-64 (226)
364 TIGR02524 dot_icm_DotB Dot/Icm 95.2 0.027 5.9E-07 60.0 5.4 27 182-208 133-159 (358)
365 KOG0735 AAA+-type ATPase [Post 95.1 0.041 9E-07 63.1 6.8 26 182-207 430-455 (952)
366 PRK09302 circadian clock prote 95.1 0.069 1.5E-06 59.0 8.4 38 183-221 273-310 (509)
367 PRK05595 replicative DNA helic 95.1 0.24 5.1E-06 54.1 12.4 40 182-221 200-239 (444)
368 PRK06321 replicative DNA helic 95.1 0.16 3.5E-06 56.1 11.2 40 182-221 225-264 (472)
369 PHA02575 1 deoxynucleoside mon 95.1 0.015 3.2E-07 58.5 2.9 37 184-226 1-37 (227)
370 PRK09518 bifunctional cytidyla 95.1 0.022 4.9E-07 65.6 4.7 37 184-226 2-38 (712)
371 TIGR01618 phage_P_loop phage n 95.1 0.014 2.9E-07 58.5 2.5 32 183-222 12-43 (220)
372 cd02034 CooC The accessory pro 95.0 0.037 8.1E-07 49.7 5.0 36 186-222 2-37 (116)
373 TIGR01241 FtsH_fam ATP-depende 95.0 0.03 6.6E-07 61.7 5.3 24 183-206 88-111 (495)
374 PRK09111 DNA polymerase III su 95.0 0.17 3.7E-06 57.5 11.4 25 183-207 46-70 (598)
375 PF08477 Miro: Miro-like prote 95.0 0.02 4.3E-07 49.4 3.1 21 186-206 2-22 (119)
376 cd00820 PEPCK_HprK Phosphoenol 95.0 0.021 4.6E-07 51.1 3.3 22 183-204 15-36 (107)
377 PRK08903 DnaA regulatory inact 95.0 0.027 5.8E-07 55.0 4.3 27 184-210 43-69 (227)
378 PF01695 IstB_IS21: IstB-like 95.0 0.019 4.1E-07 55.2 3.1 43 182-225 46-88 (178)
379 PRK05342 clpX ATP-dependent pr 95.0 0.045 9.6E-07 59.5 6.3 24 184-207 109-132 (412)
380 PF00308 Bac_DnaA: Bacterial d 95.0 0.097 2.1E-06 51.8 8.1 37 170-210 25-61 (219)
381 KOG0989 Replication factor C, 94.9 0.081 1.8E-06 55.7 7.7 25 183-207 57-81 (346)
382 PF00005 ABC_tran: ABC transpo 94.9 0.018 3.9E-07 51.2 2.6 23 184-206 12-34 (137)
383 KOG1384 tRNA delta(2)-isopente 94.9 0.26 5.6E-06 52.3 11.3 149 182-346 6-179 (348)
384 COG3911 Predicted ATPase [Gene 94.8 0.025 5.4E-07 54.1 3.5 24 183-206 9-32 (183)
385 PF09848 DUF2075: Uncharacteri 94.8 0.094 2E-06 55.2 8.2 25 183-207 1-25 (352)
386 TIGR00231 small_GTP small GTP- 94.8 0.022 4.7E-07 49.5 2.9 21 185-205 3-23 (161)
387 COG3709 Uncharacterized compon 94.8 0.32 6.9E-06 47.3 10.9 27 182-208 4-30 (192)
388 PRK14965 DNA polymerase III su 94.8 0.23 5E-06 56.1 11.7 26 182-207 37-62 (576)
389 TIGR01243 CDC48 AAA family ATP 94.8 0.052 1.1E-06 62.7 6.7 24 183-206 487-510 (733)
390 PF03308 ArgK: ArgK protein; 94.8 0.038 8.1E-07 56.8 4.9 39 182-221 28-66 (266)
391 TIGR01243 CDC48 AAA family ATP 94.8 0.11 2.4E-06 60.0 9.4 27 181-207 210-236 (733)
392 PRK08506 replicative DNA helic 94.8 0.2 4.4E-06 55.2 10.9 39 182-221 191-229 (472)
393 PLN03186 DNA repair protein RA 94.8 0.1 2.2E-06 55.4 8.3 34 168-205 112-145 (342)
394 cd01130 VirB11-like_ATPase Typ 94.8 0.023 5E-07 54.3 3.2 25 183-207 25-49 (186)
395 PRK05896 DNA polymerase III su 94.8 0.21 4.5E-06 56.9 11.1 25 183-207 38-62 (605)
396 PRK12269 bifunctional cytidyla 94.7 0.023 5.1E-07 66.9 3.7 39 183-227 34-72 (863)
397 TIGR02640 gas_vesic_GvpN gas v 94.7 0.037 8E-07 56.0 4.6 23 185-207 23-45 (262)
398 TIGR00101 ureG urease accessor 94.7 0.03 6.5E-07 54.7 3.7 25 183-207 1-25 (199)
399 PF01926 MMR_HSR1: 50S ribosom 94.7 0.025 5.5E-07 49.2 2.9 20 186-205 2-21 (116)
400 PRK08451 DNA polymerase III su 94.7 0.55 1.2E-05 52.9 14.0 63 281-344 116-187 (535)
401 TIGR00635 ruvB Holliday juncti 94.7 0.025 5.5E-07 57.5 3.3 23 185-207 32-54 (305)
402 KOG0734 AAA+-type ATPase conta 94.7 0.055 1.2E-06 60.5 6.0 36 170-205 321-359 (752)
403 PF01443 Viral_helicase1: Vira 94.6 0.021 4.6E-07 55.2 2.6 21 186-206 1-21 (234)
404 TIGR02525 plasmid_TraJ plasmid 94.6 0.042 9.1E-07 59.0 5.0 121 184-331 150-271 (372)
405 PRK13851 type IV secretion sys 94.6 0.026 5.6E-07 59.9 3.3 38 182-223 161-198 (344)
406 KOG1923 Rac1 GTPase effector F 94.6 0.094 2E-06 60.2 7.8 14 13-26 228-241 (830)
407 PRK07952 DNA replication prote 94.6 0.027 5.9E-07 57.0 3.3 38 184-222 100-137 (244)
408 PRK14493 putative bifunctional 94.6 0.038 8.3E-07 56.9 4.4 27 185-211 3-29 (274)
409 cd00154 Rab Rab family. Rab G 94.6 0.027 5.9E-07 49.4 2.9 20 186-205 3-22 (159)
410 PRK13886 conjugal transfer pro 94.6 0.36 7.8E-06 49.1 11.2 115 183-319 3-123 (241)
411 PRK06620 hypothetical protein; 94.6 0.026 5.6E-07 55.7 3.0 23 184-206 45-67 (214)
412 PRK13833 conjugal transfer pro 94.5 0.045 9.7E-07 57.7 4.8 40 183-223 144-183 (323)
413 PRK06904 replicative DNA helic 94.5 0.25 5.4E-06 54.7 10.8 40 182-221 220-259 (472)
414 cd04137 RheB Rheb (Ras Homolog 94.5 0.027 5.9E-07 52.1 2.9 20 186-205 4-23 (180)
415 TIGR02768 TraA_Ti Ti-type conj 94.5 0.095 2.1E-06 60.9 7.9 26 185-210 370-395 (744)
416 PRK09165 replicative DNA helic 94.5 0.29 6.4E-06 54.4 11.4 26 182-207 216-241 (497)
417 KOG0733 Nuclear AAA ATPase (VC 94.5 0.075 1.6E-06 60.3 6.6 64 186-289 548-611 (802)
418 TIGR02782 TrbB_P P-type conjug 94.5 0.046 9.9E-07 56.8 4.8 40 183-223 132-171 (299)
419 cd03280 ABC_MutS2 MutS2 homolo 94.5 0.46 9.9E-06 45.9 11.4 21 184-204 29-49 (200)
420 PRK15494 era GTPase Era; Provi 94.5 0.33 7.2E-06 51.2 11.2 32 174-205 43-74 (339)
421 PRK12422 chromosomal replicati 94.4 0.65 1.4E-05 51.1 13.7 26 185-210 143-168 (445)
422 PRK07133 DNA polymerase III su 94.4 0.53 1.2E-05 54.7 13.5 25 183-207 40-64 (725)
423 PRK13764 ATPase; Provisional 94.4 0.046 1E-06 62.1 4.9 28 182-209 256-283 (602)
424 cd04139 RalA_RalB RalA/RalB su 94.4 0.031 6.6E-07 50.2 2.9 21 185-205 2-22 (164)
425 TIGR00678 holB DNA polymerase 94.4 0.61 1.3E-05 44.3 11.9 25 183-207 14-38 (188)
426 PRK06851 hypothetical protein; 94.4 0.055 1.2E-06 58.0 5.2 30 182-211 29-58 (367)
427 PRK15455 PrkA family serine pr 94.4 0.03 6.4E-07 63.4 3.2 29 181-209 101-129 (644)
428 cd04170 EF-G_bact Elongation f 94.3 0.41 8.9E-06 48.2 11.1 35 285-319 92-126 (268)
429 COG0283 Cmk Cytidylate kinase 94.3 0.037 8E-07 55.4 3.4 24 184-207 5-28 (222)
430 cd04138 H_N_K_Ras_like H-Ras/N 94.3 0.033 7.2E-07 49.7 2.9 21 185-205 3-23 (162)
431 PF07724 AAA_2: AAA domain (Cd 94.3 0.047 1E-06 52.2 4.0 25 183-207 3-27 (171)
432 PHA02624 large T antigen; Prov 94.3 0.05 1.1E-06 61.7 4.8 27 181-207 429-455 (647)
433 smart00173 RAS Ras subfamily o 94.3 0.034 7.3E-07 50.4 2.9 20 186-205 3-22 (164)
434 TIGR00073 hypB hydrogenase acc 94.3 0.042 9E-07 53.4 3.7 30 178-207 17-46 (207)
435 PRK05563 DNA polymerase III su 94.3 0.51 1.1E-05 53.3 12.8 25 183-207 38-62 (559)
436 PRK07773 replicative DNA helic 94.3 0.3 6.5E-06 57.9 11.4 41 182-222 216-256 (886)
437 PF00437 T2SE: Type II/IV secr 94.3 0.043 9.4E-07 55.1 3.9 129 182-342 126-257 (270)
438 PRK12608 transcription termina 94.3 0.18 3.9E-06 54.4 8.7 24 186-209 136-159 (380)
439 CHL00176 ftsH cell division pr 94.3 0.077 1.7E-06 60.8 6.3 25 182-206 215-239 (638)
440 PRK13900 type IV secretion sys 94.3 0.042 9.1E-07 58.0 3.9 37 183-223 160-196 (332)
441 COG4608 AppF ABC-type oligopep 94.2 0.17 3.6E-06 52.3 8.1 27 181-207 37-63 (268)
442 cd03292 ABC_FtsE_transporter F 94.2 0.035 7.7E-07 53.4 3.1 25 183-207 27-51 (214)
443 PRK14087 dnaA chromosomal repl 94.2 0.21 4.6E-06 54.8 9.4 24 186-209 144-167 (450)
444 PRK13894 conjugal transfer ATP 94.2 0.058 1.2E-06 56.7 4.8 26 182-207 147-172 (319)
445 COG0714 MoxR-like ATPases [Gen 94.2 0.052 1.1E-06 56.6 4.4 40 185-227 45-84 (329)
446 PF13086 AAA_11: AAA domain; P 94.2 0.041 8.9E-07 52.1 3.4 23 185-207 19-41 (236)
447 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.2 0.038 8.3E-07 53.5 3.2 26 182-207 29-54 (218)
448 COG0464 SpoVK ATPases of the A 94.2 0.12 2.5E-06 56.8 7.3 27 180-206 273-299 (494)
449 PF02367 UPF0079: Uncharacteri 94.1 0.048 1E-06 50.0 3.6 26 182-207 14-39 (123)
450 cd03224 ABC_TM1139_LivF_branch 94.1 0.043 9.2E-07 53.2 3.4 26 182-207 25-50 (222)
451 TIGR00960 3a0501s02 Type II (G 94.1 0.038 8.2E-07 53.5 3.0 25 183-207 29-53 (216)
452 TIGR01166 cbiO cobalt transpor 94.1 0.041 8.8E-07 52.3 3.2 24 183-206 18-41 (190)
453 cd04155 Arl3 Arl3 subfamily. 94.1 0.044 9.5E-07 50.2 3.3 24 182-205 13-36 (173)
454 cd03225 ABC_cobalt_CbiO_domain 94.1 0.043 9.4E-07 52.8 3.4 26 182-207 26-51 (211)
455 cd03264 ABC_drug_resistance_li 94.1 0.036 7.7E-07 53.5 2.8 23 185-207 27-49 (211)
456 TIGR02315 ABC_phnC phosphonate 94.1 0.039 8.4E-07 54.3 3.1 26 182-207 27-52 (243)
457 cd03263 ABC_subfamily_A The AB 94.1 0.042 9.2E-07 53.2 3.3 26 182-207 27-52 (220)
458 PRK13541 cytochrome c biogenes 94.1 0.043 9.2E-07 52.6 3.3 25 182-206 25-49 (195)
459 smart00175 RAB Rab subfamily o 94.1 0.039 8.6E-07 49.6 2.9 20 186-205 3-22 (164)
460 cd00876 Ras Ras family. The R 94.1 0.04 8.6E-07 49.1 2.9 20 186-205 2-21 (160)
461 cd03219 ABC_Mj1267_LivG_branch 94.1 0.04 8.7E-07 54.0 3.1 25 182-206 25-49 (236)
462 cd01862 Rab7 Rab7 subfamily. 94.1 0.039 8.6E-07 50.1 2.9 20 186-205 3-22 (172)
463 cd01884 EF_Tu EF-Tu subfamily. 94.0 0.25 5.5E-06 48.0 8.6 24 184-207 3-26 (195)
464 cd03256 ABC_PhnC_transporter A 94.0 0.041 9E-07 54.0 3.2 26 182-207 26-51 (241)
465 TIGR02673 FtsE cell division A 94.0 0.041 8.9E-07 53.1 3.1 26 182-207 27-52 (214)
466 PRK00080 ruvB Holliday junctio 94.0 0.041 9E-07 57.2 3.3 23 185-207 53-75 (328)
467 cd03259 ABC_Carb_Solutes_like 94.0 0.045 9.8E-07 52.9 3.3 26 182-207 25-50 (213)
468 cd04159 Arl10_like Arl10-like 94.0 0.039 8.4E-07 48.6 2.6 20 186-205 2-21 (159)
469 PRK13889 conjugal transfer rel 94.0 0.18 4E-06 60.3 8.9 31 285-315 436-467 (988)
470 PRK12402 replication factor C 94.0 0.043 9.4E-07 56.1 3.3 23 185-207 38-60 (337)
471 cd03269 ABC_putative_ATPase Th 94.0 0.047 1E-06 52.6 3.3 25 182-206 25-49 (210)
472 cd04119 RJL RJL (RabJ-Like) su 93.9 0.044 9.6E-07 49.2 2.9 20 186-205 3-22 (168)
473 cd03283 ABC_MutS-like MutS-lik 93.9 0.044 9.6E-07 53.4 3.1 23 184-206 26-48 (199)
474 cd03261 ABC_Org_Solvent_Resist 93.9 0.046 9.9E-07 53.7 3.2 26 182-207 25-50 (235)
475 COG0468 RecA RecA/RadA recombi 93.9 0.37 8.1E-06 50.0 10.0 41 168-212 49-89 (279)
476 COG1703 ArgK Putative periplas 93.9 0.072 1.6E-06 55.9 4.7 40 181-221 49-88 (323)
477 PRK10463 hydrogenase nickel in 93.9 0.079 1.7E-06 55.2 5.0 30 179-208 100-129 (290)
478 PF01078 Mg_chelatase: Magnesi 93.9 0.047 1E-06 54.3 3.2 23 185-207 24-46 (206)
479 cd04169 RF3 RF3 subfamily. Pe 93.9 0.59 1.3E-05 47.7 11.3 22 185-206 4-25 (267)
480 cd03260 ABC_PstB_phosphate_tra 93.9 0.049 1.1E-06 53.1 3.3 26 182-207 25-50 (227)
481 cd03258 ABC_MetN_methionine_tr 93.9 0.046 1E-06 53.5 3.1 26 182-207 30-55 (233)
482 TIGR00767 rho transcription te 93.9 0.33 7.1E-06 53.0 9.7 25 184-208 169-193 (415)
483 cd03301 ABC_MalK_N The N-termi 93.8 0.05 1.1E-06 52.4 3.3 26 182-207 25-50 (213)
484 PRK05201 hslU ATP-dependent pr 93.8 0.057 1.2E-06 59.1 4.0 25 183-207 50-74 (443)
485 cd04156 ARLTS1 ARLTS1 subfamil 93.8 0.046 9.9E-07 49.3 2.8 20 186-205 2-21 (160)
486 cd03234 ABCG_White The White s 93.8 0.054 1.2E-06 53.0 3.5 26 182-207 32-57 (226)
487 cd03262 ABC_HisP_GlnQ_permease 93.8 0.048 1E-06 52.5 3.1 25 183-207 26-50 (213)
488 cd04136 Rap_like Rap-like subf 93.8 0.048 1E-06 49.1 2.9 21 185-205 3-23 (163)
489 cd01894 EngA1 EngA1 subfamily. 93.8 0.55 1.2E-05 41.6 9.7 35 285-319 81-115 (157)
490 PF10662 PduV-EutP: Ethanolami 93.8 0.044 9.6E-07 51.5 2.7 21 186-206 4-24 (143)
491 PF07726 AAA_3: ATPase family 93.8 0.045 9.7E-07 50.8 2.7 29 186-217 2-30 (131)
492 TIGR03608 L_ocin_972_ABC putat 93.8 0.049 1.1E-06 52.1 3.1 25 183-207 24-48 (206)
493 cd01898 Obg Obg subfamily. Th 93.8 0.046 1E-06 49.7 2.8 20 186-205 3-22 (170)
494 COG1222 RPT1 ATP-dependent 26S 93.8 0.18 4E-06 54.1 7.5 26 181-206 183-208 (406)
495 cd03230 ABC_DR_subfamily_A Thi 93.8 0.054 1.2E-06 51.0 3.3 25 182-206 25-49 (173)
496 cd03235 ABC_Metallic_Cations A 93.8 0.046 1E-06 52.8 2.9 25 182-206 24-48 (213)
497 cd03293 ABC_NrtD_SsuB_transpor 93.8 0.049 1.1E-06 53.0 3.1 24 183-206 30-53 (220)
498 PRK11629 lolD lipoprotein tran 93.8 0.051 1.1E-06 53.4 3.3 25 182-206 34-58 (233)
499 PRK13341 recombination factor 93.8 0.49 1.1E-05 55.1 11.6 118 186-345 55-180 (725)
500 cd03226 ABC_cobalt_CbiO_domain 93.7 0.05 1.1E-06 52.3 3.0 20 185-204 28-47 (205)
No 1
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.82 E-value=8.5e-20 Score=184.96 Aligned_cols=146 Identities=27% Similarity=0.351 Sum_probs=102.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
||||||+|||||||+|++|.+++.+. +....+++.+++..... .|. +...+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~-~~~v~~i~~~~~~~~~~--------------------------~y~-~~~~Ek 54 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK-GKEVVIISDDSLGIDRN--------------------------DYA-DSKKEK 54 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT-T--EEEE-THHHH-TTS--------------------------SS---GGGHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCEEEEEcccccccchh--------------------------hhh-chhhhH
Confidence 89999999999999999999998764 33445555443331110 011 223455
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----CCCHHHHH
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-----GFTLDDIE 339 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-----~VpeEvIe 339 (535)
.++..+...+++.|.... +||||++|+...+|.+++++||+++..+.+|+|.| +.+.|++||.. .+++++|.
T Consensus 55 ~~R~~l~s~v~r~ls~~~--iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~-~~e~~~~~N~~R~~~~~~~~e~i~ 131 (270)
T PF08433_consen 55 EARGSLKSAVERALSKDT--IVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDC-PLETCLQRNSKRPEPERYPEETID 131 (270)
T ss_dssp HHHHHHHHHHHHHHTT-S--EEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHTT-S--S-HHHHH
T ss_pred HHHHHHHHHHHHhhccCe--EEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECC-CHHHHHHhhhccCCCCCCCHHHHH
Confidence 678888888999998887 99999999999999999999999999999999998 89999999986 39999999
Q ss_pred HHhhccccCCccceeecCCCCcc
Q 009432 340 RMAGQWEEAPTLYLQLDIKTLFH 362 (535)
Q Consensus 340 ~M~krfE~~p~~y~~lD~~sll~ 362 (535)
.|..+||++.+ .+.||...|+.
T Consensus 132 ~m~~RfE~P~~-~nrWD~plf~i 153 (270)
T PF08433_consen 132 DMIQRFEEPDP-KNRWDSPLFTI 153 (270)
T ss_dssp HHHHH---TTS-S-GGGS-SEEE
T ss_pred HHHHHhcCCCC-CCCccCCeEEE
Confidence 99999999766 78999988874
No 2
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.77 E-value=2.2e-18 Score=154.35 Aligned_cols=134 Identities=28% Similarity=0.301 Sum_probs=99.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
||||||+|||||||||+.|.+.+ + ..+++.|+++........ . ...+......
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~----~--~~~i~~D~~~~~~~~~~~---~------------------~~~~~~~~~~ 53 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL----G--AVVISQDEIRRRLAGEDP---P------------------SPSDYIEAEE 53 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS----T--EEEEEHHHHHHHHCCSSS---G------------------CCCCCHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC----C--CEEEeHHHHHHHHccccc---c------------------cchhHHHHHH
Confidence 79999999999999999999763 2 467788887765432100 0 0112223445
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---------CCCH
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---------GFTL 335 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---------~Vpe 335 (535)
..++.+...+...++.|. .+|||++|...++|..|.++++++|+.+.+|+|.+ +.++|.+|+.. .++.
T Consensus 54 ~~~~~~~~~~~~~l~~g~--~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~-~~~~~~~R~~~R~~~~~~~~~~~~ 130 (143)
T PF13671_consen 54 RAYQILNAAIRKALRNGN--SVVVDNTNLSREERARLRELARKHGYPVRVVYLDA-PEETLRERLAQRNREGDKRFEVPE 130 (143)
T ss_dssp HHHHHHHHHHHHHHHTT---EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECH-HHHHHHHHHHTTHCCCTTS----H
T ss_pred HHHHHHHHHHHHHHHcCC--CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEEC-CHHHHHHHHHhcCCcccccccCcH
Confidence 567777788889999998 89999999999999999999999999999999987 67888887654 3889
Q ss_pred HHHHHHhhccccC
Q 009432 336 DDIERMAGQWEEA 348 (535)
Q Consensus 336 EvIe~M~krfE~~ 348 (535)
+.+++|+++||.+
T Consensus 131 ~~~~~~~~~~e~p 143 (143)
T PF13671_consen 131 EVFDRMLARFEPP 143 (143)
T ss_dssp HHHHHHHHHHH--
T ss_pred HHHHHHHHhhccC
Confidence 9999999999863
No 3
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.77 E-value=5.8e-18 Score=185.32 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=119.3
Q ss_pred CCCCCCCCCCCcCCCCCCCCCcccchhhhhcCCC--CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432 143 PMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPH--RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM 220 (535)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~p~~v~~~~ll~~p~--r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~ 220 (535)
.||++.+...|. ...++|..+....-++.|. -.....+.||||+|+|||||||||+.++... + + .+++.
T Consensus 330 e~Fl~~~~~~~~---~~~f~p~~~~~~~~~~~~~~~~~~~~~p~LVil~G~pGSGKST~A~~l~~~~----g-~-~~vn~ 400 (526)
T TIGR01663 330 EFFLGKPAAGFE---KPAFDPRSVQDQGPLCDPDDLALDDAPCEMVIAVGFPGAGKSHFCKKFFQPA----G-Y-KHVNA 400 (526)
T ss_pred HHhCCCCccccc---ccCCCchhhcccccccCCcccccCCCCceEEEEECCCCCCHHHHHHHHHHHc----C-C-eEECc
Confidence 477777777773 4456887776544343332 2345788999999999999999999998642 2 2 34454
Q ss_pred CceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH
Q 009432 221 DDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ 300 (535)
Q Consensus 221 DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~ 300 (535)
|++ ..++.|+..++++|+.|. .||||+||.++++|+.
T Consensus 401 D~l-----------------------------------------g~~~~~~~~a~~~L~~G~--sVVIDaTn~~~~~R~~ 437 (526)
T TIGR01663 401 DTL-----------------------------------------GSTQNCLTACERALDQGK--RCAIDNTNPDAASRAK 437 (526)
T ss_pred HHH-----------------------------------------HHHHHHHHHHHHHHhCCC--cEEEECCCCCHHHHHH
Confidence 431 024567788899999999 9999999999999999
Q ss_pred HHHHHhhcCceEEEEEEecCCHHHHHHhhcC---------CCCHHHHHHHhhccccC
Q 009432 301 FWATAKRSGYEVYILEATYKDPAGCAARNVH---------GFTLDDIERMAGQWEEA 348 (535)
Q Consensus 301 f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---------~VpeEvIe~M~krfE~~ 348 (535)
|+++|+++|+++++++|.+ +.++|.+||.. .++++++..|.++||++
T Consensus 438 ~i~lAk~~gv~v~~i~~~~-p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~P 493 (526)
T TIGR01663 438 FLQCARAAGIPCRCFLFNA-PLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAP 493 (526)
T ss_pred HHHHHHHcCCeEEEEEeCC-CHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCC
Confidence 9999999999999999997 78999888754 56789999999999963
No 4
>COG4639 Predicted kinase [General function prediction only]
Probab=99.75 E-value=9.3e-18 Score=157.23 Aligned_cols=128 Identities=28% Similarity=0.332 Sum_probs=104.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
..||+|||+|||||||||+.... .+.+++.||+++..+. .. + ++.. ...
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~--------~~~~lsld~~r~~lg~-~~--------~-----~e~s---------qk~ 50 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL--------QNYVLSLDDLRLLLGV-SA--------S-----KENS---------QKN 50 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC--------CcceecHHHHHHHhhh-ch--------h-----hhhc---------ccc
Confidence 46999999999999999999653 2357788988875421 00 0 0000 112
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHHH
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDIE 339 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvIe 339 (535)
...+++.+.+.+++.|..|+ +.|+||||.+++.|+.++++|+.|||..++|++++ ++++|.+||.. .++.++|.
T Consensus 51 ~~~~~~~l~~~l~qrl~~Gk--~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdt-p~~~c~aRNk~~~Rqv~~~VI~ 127 (168)
T COG4639 51 DELVWDILYKQLEQRLRRGK--FTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDT-PLELCLARNKLRERQVPEEVIP 127 (168)
T ss_pred HHHHHHHHHHHHHHHHHcCC--eEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeC-CHHHHHHHhhccchhCCHHHHH
Confidence 34477788888999999999 99999999999999999999999999999999996 89999999964 89999999
Q ss_pred HHhhc
Q 009432 340 RMAGQ 344 (535)
Q Consensus 340 ~M~kr 344 (535)
+|.+.
T Consensus 128 r~~r~ 132 (168)
T COG4639 128 RMLRE 132 (168)
T ss_pred HHHHH
Confidence 99876
No 5
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.75 E-value=4.7e-18 Score=168.01 Aligned_cols=156 Identities=24% Similarity=0.321 Sum_probs=102.9
Q ss_pred CCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh
Q 009432 176 HRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME 255 (535)
Q Consensus 176 ~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e 255 (535)
++.....++||||+||||+||||+|++|.++|.|. |..++||+.++|+|.......+ .
T Consensus 5 ~~~~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~-g~~~~vFn~g~yRR~~~~~~~~---------------------~ 62 (222)
T PF01591_consen 5 GRLFHAGKLVIVMVGLPARGKSYIARKLCRYLNWL-GVKTKVFNVGDYRRKLSGAPQD---------------------A 62 (222)
T ss_dssp --------EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEEHHHHHHHHHSS-S----------------------G
T ss_pred cccCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhc-CCCcceeecccceecccccccc---------------------c
Confidence 34556789999999999999999999999999887 5678999999999987542100 1
Q ss_pred ccCchHH------HHHHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432 256 YCYEPEM------EEAYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA 327 (535)
Q Consensus 256 y~y~~e~------ee~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~ 327 (535)
..|++.. .+.+...+++.+...|. .|. +.|+||||.++++|+.+++.+++.++++.|||+.|+| +.+++
T Consensus 63 ~ff~p~n~~~~~~R~~~a~~~l~dl~~~l~~~~G~--VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D-~~ii~ 139 (222)
T PF01591_consen 63 EFFDPDNEEAKKLREQIAKEALEDLIEWLQEEGGQ--VAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDD-PEIIE 139 (222)
T ss_dssp GGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--S--EEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE----HHHHH
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe--EEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCC-HHHHH
Confidence 1233332 22233345555666776 455 9999999999999999999999999999999999954 56677
Q ss_pred hhcC-----------CCCHHHHHHHhhccccCCccceeec
Q 009432 328 RNVH-----------GFTLDDIERMAGQWEEAPTLYLQLD 356 (535)
Q Consensus 328 RNih-----------~VpeEvIe~M~krfE~~p~~y~~lD 356 (535)
+|++ .-+++.++.+.+|.+.....|..+|
T Consensus 140 ~NI~~~~~~spDY~~~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 140 RNIREKKQNSPDYKGMDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp HHHHHHHTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHcCCcccccCCHHHHHHHHHHHHHhhcccccccc
Confidence 7764 3447899999999999999998887
No 6
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.72 E-value=5.3e-17 Score=158.50 Aligned_cols=148 Identities=28% Similarity=0.297 Sum_probs=106.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
|||++|+|||||||||+.|++.+...+. . .++...||.+... ++++ . .+.++. |.....+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~-~-vi~l~kdy~~~i~-----~DEs--l-------pi~ke~----yres~~k 62 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIW-R-VIHLEKDYLRGIL-----WDES--L-------PILKEV----YRESFLK 62 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhh-h-ccccchhhhhhee-----cccc--c-------chHHHH----HHHHHHH
Confidence 8999999999999999999999876643 2 3444455655432 1111 0 111111 1111111
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHHHHH
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDIERM 341 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvIe~M 341 (535)
.... |+ -.+|+ .. +||+|++|+...+|+++++.|+++.....+|.+.| ++++|++||.. .+++|++++|
T Consensus 63 s~~r-ll---dSalk-n~--~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~-plDtc~rrN~ergepip~Evl~ql 134 (261)
T COG4088 63 SVER-LL---DSALK-NY--LVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRT-PLDTCLRRNRERGEPIPEEVLRQL 134 (261)
T ss_pred HHHH-HH---HHHhc-ce--EEEEecccHHHHHHHHHHHHHHhcCCceEEEEEcc-CHHHHHHhhccCCCCCCHHHHHHH
Confidence 1111 22 22333 45 99999999999999999999999999999999987 89999999976 8999999999
Q ss_pred hhccccCCccceeecCCCCc
Q 009432 342 AGQWEEAPTLYLQLDIKTLF 361 (535)
Q Consensus 342 ~krfE~~p~~y~~lD~~sll 361 (535)
+.+||++.+ ..+||.--|.
T Consensus 135 y~RfEePn~-~~rWDspll~ 153 (261)
T COG4088 135 YDRFEEPNP-DRRWDSPLLV 153 (261)
T ss_pred HHhhcCCCC-CccccCceEE
Confidence 999998554 5689886665
No 7
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.68 E-value=5.5e-16 Score=161.91 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=117.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcccccc-ccccccCCccCCcchhhhhhhcc------
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDS-DVSKSSGSLRSKKPVTKMVMEYC------ 257 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~-~~sk~~g~~r~kk~l~kkv~ey~------ 257 (535)
|++|+|+|||||||+++.|...+....|..+.++++||++.........+ .....|+.. ++.+.+-+..++
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~--R~~i~~~le~~v~a~~~g 78 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQF--RQELLKYLEHFLVAVING 78 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHH--HHHHHHHHHHHHHHhcCc
Confidence 57999999999999999999887633355778999999985321100000 000011111 111111110000
Q ss_pred -Cc-h------HHHHHHHHHH-----------------HHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE
Q 009432 258 -YE-P------EMEEAYRSSM-----------------LKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV 312 (535)
Q Consensus 258 -y~-~------e~ee~~~q~l-----------------lk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V 312 (535)
+. + .+....+..| .......+..+. +||||++|+...+|++++++|+.++..+
T Consensus 79 ~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~Lsrpl--lvilDd~fy~ks~Ryel~~LAr~~~~~~ 156 (340)
T TIGR03575 79 SELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPL--CLVLDDNFYYQSMRYEVYQLARKYSLGF 156 (340)
T ss_pred ccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCC--CceecCCCCCHHHHHHHHHHHHHhCCCE
Confidence 00 0 0010011111 112234445555 8999999999999999999999999999
Q ss_pred EEEEEecCCHHHHHHhhcC---CCCHHHHHHHhhccccCCccceeecCCCCcc
Q 009432 313 YILEATYKDPAGCAARNVH---GFTLDDIERMAGQWEEAPTLYLQLDIKTLFH 362 (535)
Q Consensus 313 ~vIe~~~~d~e~ci~RNih---~VpeEvIe~M~krfE~~p~~y~~lD~~sll~ 362 (535)
++|+|.+ ++++|++||.. .+++++|+.|..+||.+.+..+.||..+|+.
T Consensus 157 ~~V~ld~-ple~~l~RN~~R~~~v~devie~m~~r~E~P~~~~nrWd~pl~~v 208 (340)
T TIGR03575 157 CQLFLDC-PVESCLLRNKQRPVPLPDETIQLMGRKIEKPNPEKNAWEHNSLVI 208 (340)
T ss_pred EEEEEeC-CHHHHHHHHhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCCCeEEE
Confidence 9999997 89999999976 6999999999999999888899999999984
No 8
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.67 E-value=6.7e-16 Score=153.06 Aligned_cols=144 Identities=26% Similarity=0.223 Sum_probs=106.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
||+|+|+|||||||+|+.|++++.+. +....+++.|.++..... |....+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~-~~~v~~i~~D~lr~~~~~----------------------------~~~~~e~ 51 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK-NIDVIILGTDLIRESFPV----------------------------WKEKYEE 51 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc-CCceEEEccHHHHHHhHH----------------------------hhHHhHH
Confidence 69999999999999999999987543 233445454443321100 0001112
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHHHHH
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDIERM 341 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvIe~M 341 (535)
..+......++.+|+.|. .||+|++|+...+|.+++++|+.+++.+++|+|.+ +.++|++||.. .++.++++.|
T Consensus 52 ~~~~~~~~~i~~~l~~~~--~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~-p~e~~~~Rn~~R~~~~~~~~i~~l 128 (249)
T TIGR03574 52 FIRDSTLYLIKTALKNKY--SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKA-PLDTLLRRNIERGEKIPNEVIKDM 128 (249)
T ss_pred HHHHHHHHHHHHHHhCCC--eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecC-CHHHHHHHHHhCCCCCCHHHHHHH
Confidence 233344556778888898 89999999999999999999999999999999987 88999999875 5778999999
Q ss_pred hhccccCCccceeecCCCCc
Q 009432 342 AGQWEEAPTLYLQLDIKTLF 361 (535)
Q Consensus 342 ~krfE~~p~~y~~lD~~sll 361 (535)
+.+|+.+.. ...||...|.
T Consensus 129 ~~r~e~p~~-~~~wd~~~~~ 147 (249)
T TIGR03574 129 YEKFDEPGT-KYSWDLPDLT 147 (249)
T ss_pred HHhhCCCCC-CCCccCceEE
Confidence 999997544 4577875554
No 9
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.63 E-value=4.5e-15 Score=149.81 Aligned_cols=140 Identities=24% Similarity=0.167 Sum_probs=105.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
+.||||+|+|||||||+|++|++.+ . ...+++.|+++...... . . ...|.|..+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~----~-~~~~l~~D~~r~~~~~~-~----------~---------~~~~~~~~~~ 56 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN----P-KAVNVNRDDLRQSLFGH-G----------E---------WGEYKFTKEK 56 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC----C-CCEEEeccHHHHHhcCC-C----------c---------ccccccChHH
Confidence 4689999999999999999999864 1 23567888765432210 0 0 0113344333
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHHH
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDDI 338 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEvI 338 (535)
+...++.+...+..++..|. .||||+++....+|..|.++|+++++.+.+|.+.+ +.++|.+|+. +.++.++|
T Consensus 57 ~~~~~~~~~~~~~~~l~~g~--~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~~~~~~~~i 133 (300)
T PHA02530 57 EDLVTKAQEAAALAALKSGK--SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGERAVPEDVL 133 (300)
T ss_pred HHHHHHHHHHHHHHHHHcCC--eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCcCCCCHHHH
Confidence 33344455566777888998 89999999999999999999999999998899987 7888888775 47899999
Q ss_pred HHHhhccccCCc
Q 009432 339 ERMAGQWEEAPT 350 (535)
Q Consensus 339 e~M~krfE~~p~ 350 (535)
++|+++++....
T Consensus 134 ~~~~~~~~~~~~ 145 (300)
T PHA02530 134 RSMFKQMKEYRG 145 (300)
T ss_pred HHHHHHHHHhcC
Confidence 999999997643
No 10
>PRK06762 hypothetical protein; Provisional
Probab=99.56 E-value=6.8e-14 Score=129.61 Aligned_cols=130 Identities=19% Similarity=0.119 Sum_probs=92.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
+.+|+|+|+|||||||+|+.|++.+ +....+++.|.++...... .... . . +
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l----~~~~~~i~~D~~r~~l~~~-~~~~---------~---------~--~---- 52 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL----GRGTLLVSQDVVRRDMLRV-KDGP---------G---------N--L---- 52 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEecHHHHHHHhccc-cCCC---------C---------C--c----
Confidence 5799999999999999999999875 2234556766665432210 0000 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----CCCHHH
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-----GFTLDD 337 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-----~VpeEv 337 (535)
.+..+...+...++.|. +||+|+++....++..+..+++.+++++.+|++.+ ++++|++|+.+ .++++.
T Consensus 53 ---~~~~~~~~~~~~~~~g~--~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Lda-p~e~~~~R~~~R~~~~~~~~~~ 126 (166)
T PRK06762 53 ---SIDLIEQLVRYGLGHCE--FVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDL-SFEETLRRHSTRPKSHEFGEDD 126 (166)
T ss_pred ---CHHHHHHHHHHHHhCCC--EEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeC-CHHHHHHHHhcccccccCCHHH
Confidence 11122233445577888 99999999888888888899999999999999987 78999998865 467888
Q ss_pred HHHHhhcccc
Q 009432 338 IERMAGQWEE 347 (535)
Q Consensus 338 Ie~M~krfE~ 347 (535)
|+.++..++.
T Consensus 127 l~~~~~~~~~ 136 (166)
T PRK06762 127 MRRWWNPHDT 136 (166)
T ss_pred HHHHHhhcCC
Confidence 8888776664
No 11
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=99.52 E-value=5.6e-14 Score=138.66 Aligned_cols=148 Identities=26% Similarity=0.338 Sum_probs=114.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
|||+||+|.|||||.|+.|++.+.+.+....++++.|+- +|+++. ..|. +-..+.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----------------lg~~~n--------s~y~-~s~~EK 57 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----------------LGIEKN--------SNYG-DSQAEK 57 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----------------cCCCCc--------cccc-ccHHHH
Confidence 799999999999999999999998876443333233322 122210 0111 112455
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-------CCCHHH
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-------GFTLDD 337 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-------~VpeEv 337 (535)
+.+..+..++.+.|..+. +||||+-|+-.-.|.+++++||..+...++|.+.+ +.+.|.+-|.. +.+++.
T Consensus 58 ~lRg~L~S~v~R~Lsk~~--iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~v-p~e~~r~~Ns~~~~p~e~gy~~e~ 134 (281)
T KOG3062|consen 58 ALRGKLRSAVDRSLSKGD--IVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAV-PQELCREWNSEREDPGEDGYDDEL 134 (281)
T ss_pred HHHHHHHHHHHhhcccCc--EEEEecccccccceeeeeeehhccceeEEEEEecC-CHHHHHHhcccCCCCCCCCCCHHH
Confidence 678888889999999998 99999999999999999999999988777777766 88999998865 488999
Q ss_pred HHHHhhccccCCccceeecCCCCc
Q 009432 338 IERMAGQWEEAPTLYLQLDIKTLF 361 (535)
Q Consensus 338 Ie~M~krfE~~p~~y~~lD~~sll 361 (535)
++.+..|||+ |.-.++||.-=+.
T Consensus 135 le~L~~RyEe-P~s~NRWDsPLf~ 157 (281)
T KOG3062|consen 135 LEALVQRYEE-PNSRNRWDSPLFT 157 (281)
T ss_pred HHHHHHHhhC-CCccccccCcceE
Confidence 9999999998 6668999986554
No 12
>COG0645 Predicted kinase [General function prediction only]
Probab=99.47 E-value=4.8e-13 Score=127.09 Aligned_cols=140 Identities=22% Similarity=0.168 Sum_probs=108.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
+.+++|+|+|||||||+|+.|.+.+ | ..++..|+++.... ++.... +...-.|.+++
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~l---g---A~~lrsD~irk~L~-g~p~~~----------------r~~~g~ys~~~ 57 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELL---G---AIRLRSDVIRKRLF-GVPEET----------------RGPAGLYSPAA 57 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhc---C---ceEEehHHHHHHhc-CCcccc----------------cCCCCCCcHHH
Confidence 3689999999999999999999875 2 34556676655443 332111 01134688899
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH----hhc--CCCCHH
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA----RNV--HGFTLD 336 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~----RNi--h~VpeE 336 (535)
....|..|...++.+|..|. .||+|++|.+..+|+.+..+|++.|..+..|.|.+ +.++... |+. .+.+.+
T Consensus 58 ~~~vy~~l~~~A~l~l~~G~--~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~a-p~~v~~~rl~aR~~d~sDA~~~ 134 (170)
T COG0645 58 TAAVYDELLGRAELLLSSGH--SVVLDATFDRPQERALARALARDVGVAFVLIRLEA-PEEVLRGRLAARKGDASDATFD 134 (170)
T ss_pred HHHHHHHHHHHHHHHHhCCC--cEEEecccCCHHHHHHHHHHHhccCCceEEEEcCC-cHHHHHHHHHHhCCCcccchHH
Confidence 99999999999999999999 99999999999999999999999999999999987 5554433 443 245677
Q ss_pred HHHHHhhccccC
Q 009432 337 DIERMAGQWEEA 348 (535)
Q Consensus 337 vIe~M~krfE~~ 348 (535)
+++.....|+..
T Consensus 135 il~~q~~~~~~~ 146 (170)
T COG0645 135 ILRVQLAEDEPW 146 (170)
T ss_pred HHHHHHhhhCCc
Confidence 777777777763
No 13
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.47 E-value=8e-13 Score=124.56 Aligned_cols=145 Identities=20% Similarity=0.161 Sum_probs=91.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
++++|+|+|+|||||||+|+.|.++|.+.| ..+.++..|.++...... ..|+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g-~~~~~LDgD~lR~~l~~d-------------------------l~fs~~ 54 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARG-IKVYLLDGDNLRHGLNAD-------------------------LGFSKE 54 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTT-S-EEEEEHHHHCTTTTTT---------------------------SSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEecCcchhhccCCC-------------------------CCCCHH
Confidence 368999999999999999999999998764 566666666655433211 112222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHH--
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIE-- 339 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe-- 339 (535)
.......++...+....++|. +||++.+....+.|....++.... .++-|++.| +.++|.+|+.++.-.....
T Consensus 55 dR~e~~rr~~~~A~ll~~~G~--ivIva~isp~~~~R~~~R~~~~~~--~f~eVyv~~-~~e~~~~RD~KglY~ka~~g~ 129 (156)
T PF01583_consen 55 DREENIRRIAEVAKLLADQGI--IVIVAFISPYREDREWARELIPNE--RFIEVYVDC-PLEVCRKRDPKGLYAKARAGE 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--EEEEE----SHHHHHHHHHHHHTT--EEEEEEEES--HHHHHHHTTTSHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhCCC--eEEEeeccCchHHHHHHHHhCCcC--ceEEEEeCC-CHHHHHHhCchhHHHHhhCCC
Confidence 222334466677777889998 999999999999999888888755 566777776 8999999998865544432
Q ss_pred -----HHhhccccCCccceeecC
Q 009432 340 -----RMAGQWEEAPTLYLQLDI 357 (535)
Q Consensus 340 -----~M~krfE~~p~~y~~lD~ 357 (535)
-+-.-||++...-+.+|.
T Consensus 130 i~~~~Gvd~~ye~P~~pdl~idt 152 (156)
T PF01583_consen 130 IKNFTGVDDPYEEPLNPDLVIDT 152 (156)
T ss_dssp SSSHTTTSS-----SS-SEEEET
T ss_pred cCCccccccCCCCCCCCeEEEeC
Confidence 123455555444444444
No 14
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.46 E-value=1e-12 Score=119.62 Aligned_cols=133 Identities=20% Similarity=0.149 Sum_probs=89.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc-ccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK-VEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~-v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
||+|+|+|||||||+|+.|.+.+ + ..+++.|+++...... ... |.. +.....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~----~--~~~i~~D~~~~~~~~~~~~~-------~~~--------------~~~~~~ 53 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL----G--APFIDGDDLHPPANIAKMAA-------GIP--------------LNDEDR 53 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc----C--CEEEeCcccccHHHHHHHHc-------CCC--------------CCccch
Confidence 68999999999999999999763 2 3567888876532100 000 000 000000
Q ss_pred HHHHHHHHHHHHHHH-HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCHHHH
Q 009432 264 EAYRSSMLKAFTRTL-DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTLDDI 338 (535)
Q Consensus 264 e~~~q~llk~akkaL-k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~VpeEvI 338 (535)
..+...+...+...+ ..|. .||+|+++....+|..+.++| +++.+.+|+|.+ +.++|.+|+.. ..+.+.|
T Consensus 54 ~~~~~~~~~~~~~~l~~~~~--~vVid~~~~~~~~r~~~~~~~--~~~~~~~v~l~~-~~~~~~~R~~~R~~~~~~~~~~ 128 (150)
T cd02021 54 WPWLQALTDALLAKLASAGE--GVVVACSALKRIYRDILRGGA--ANPRVRFVHLDG-PREVLAERLAARKGHFMPADLL 128 (150)
T ss_pred hhHHHHHHHHHHHHHHhCCC--CEEEEeccccHHHHHHHHhcC--CCCCEEEEEEEC-CHHHHHHHHHhcccCCCCHHHH
Confidence 111222222222223 4777 899999999999999999888 788888999987 78888887664 5668899
Q ss_pred HHHhhccccCC
Q 009432 339 ERMAGQWEEAP 349 (535)
Q Consensus 339 e~M~krfE~~p 349 (535)
+.+.+.|+.+.
T Consensus 129 ~~~~~~~~~p~ 139 (150)
T cd02021 129 DSQFETLEPPG 139 (150)
T ss_pred HHHHHHhcCCC
Confidence 99999999754
No 15
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.44 E-value=1.8e-12 Score=121.95 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=80.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
.+|||+|+|||||||+|+.|.+.+ +.....++.|+|+......... ..+....... ...+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~----~~~~~~~~~D~~~~~~~~~~~~---------~~~~~~~~~~--~~~~~~~~~ 67 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL----AEPWLHFGVDSFIEALPLKCQD---------AEGGIEFDGD--GGVSPGPEF 67 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh----CCCccccCccHHHHhcChhhcc---------cccccccCcc--CCcccchHH
Confidence 489999999999999999999764 2222344778776543211000 0000000000 001111233
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeCCCC-CHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNL-RVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~-~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
..++..+...+...++.|. .||||+++. ..+.|..+..+ .+.++.+|+|.| +.++|.+|...
T Consensus 68 ~~~y~~~~~~~~~~l~~G~--~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~-~~~~l~~R~~~ 130 (175)
T cd00227 68 RLLEGAWYEAVAAMARAGA--NVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRC-PGEVAEGRETA 130 (175)
T ss_pred HHHHHHHHHHHHHHHhCCC--cEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEEC-CHHHHHHHHHh
Confidence 4567777778888999999 999999998 45555444333 357788999998 67999998875
No 16
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.43 E-value=1.4e-12 Score=120.65 Aligned_cols=117 Identities=22% Similarity=0.180 Sum_probs=80.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
+|+|+|+|||||||+|+.|.+.+.+.+. ...+++.|.++...... ..|..+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~-~~~~i~~d~~r~~l~~~-------------------------~~~~~~~~~ 54 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGR-PVYVLDGDNVRHGLNKD-------------------------LGFSREDRE 54 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCHHHHHhhhhc-------------------------cCCCcchHH
Confidence 5899999999999999999998754432 22344445444322110 011111111
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCC
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHG 332 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~ 332 (535)
..+..+...+...++.|. +||+|+++....+|..+.++++ ++.+.+++|.+ +.++|.+|+.++
T Consensus 55 ~~~~~~~~~a~~l~~~G~--~VIid~~~~~~~~R~~~~~l~~--~~~~~~i~l~~-~~e~~~~R~~~~ 117 (149)
T cd02027 55 ENIRRIAEVAKLLADAGL--IVIAAFISPYREDREAARKIIG--GGDFLEVFVDT-PLEVCEQRDPKG 117 (149)
T ss_pred HHHHHHHHHHHHHHhCCC--EEEEccCCCCHHHHHHHHHhcC--CCCEEEEEEeC-CHHHHHHhCchh
Confidence 222334444556678898 9999999999999999998887 78888899987 789999998663
No 17
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.40 E-value=6e-12 Score=119.05 Aligned_cols=120 Identities=20% Similarity=0.133 Sum_probs=84.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
..+.+|+|+|+|||||||+|+.|...+...+ ....+++.|+++..... ...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~-~~~~~l~~d~~r~~l~~-------------------------~~~~~~ 69 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKG-YRVYVLDGDNVRHGLNK-------------------------DLGFSE 69 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEECChHHHhhhcc-------------------------ccCCCH
Confidence 4567999999999999999999998875433 23345555654432211 012332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
+.....+..+...+...++.|. +||+|+++..+.+|..+..++... .+.+|++.+ +.++|.+|+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~G~--~VI~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~-~~e~~~~R~~~ 135 (184)
T TIGR00455 70 EDRKENIRRIGEVAKLFVRNGI--IVITSFISPYRADRQMVRELIEKG--EFIEVFVDC-PLEVCEQRDPK 135 (184)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHhCcCC--CeEEEEEeC-CHHHHHHhCch
Confidence 3323334445555666788998 999999999999999988888865 566677776 78999999653
No 18
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.37 E-value=1.2e-11 Score=114.20 Aligned_cols=129 Identities=19% Similarity=0.143 Sum_probs=85.1
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA 265 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~ 265 (535)
|+|+|++||||||+|+.|...+ + ..+++.|+++........ ..| ..+.......
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l----~--~~~v~~D~~~~~~~~~~~------~~~--------------~~~~~~~~~~ 54 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL----G--AKFIEGDDLHPAANIEKM------SAG--------------IPLNDDDRWP 54 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc----C--CeEEeCccccChHHHHHH------HcC--------------CCCChhhHHH
Confidence 5799999999999999999874 2 356688887542110000 000 0011111222
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCHHHHHHH
Q 009432 266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTLDDIERM 341 (535)
Q Consensus 266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~VpeEvIe~M 341 (535)
++..+.+.+...+..|. .+|||+++.++.+|. .++.++..+.++++.+ +.++|++|... ..+.+.|+.+
T Consensus 55 ~~~~~~~~~~~~l~~~~--~~Vi~~t~~~~~~r~----~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~ 127 (163)
T TIGR01313 55 WLQNLNDASTAAAAKNK--VGIITCSALKRHYRD----ILREAEPNLHFIYLSG-DKDVILERMKARKGHFMKADMLESQ 127 (163)
T ss_pred HHHHHHHHHHHHHhcCC--CEEEEecccHHHHHH----HHHhcCCCEEEEEEeC-CHHHHHHHHHhccCCCCCHHHHHHH
Confidence 44556666777888887 789999988766654 4447788888888887 78899888764 2356788888
Q ss_pred hhcccc
Q 009432 342 AGQWEE 347 (535)
Q Consensus 342 ~krfE~ 347 (535)
+.+++.
T Consensus 128 ~~~~~~ 133 (163)
T TIGR01313 128 FAALEE 133 (163)
T ss_pred HHHhCC
Confidence 777664
No 19
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.24 E-value=8e-11 Score=113.09 Aligned_cols=135 Identities=19% Similarity=0.078 Sum_probs=95.1
Q ss_pred CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccC
Q 009432 179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCY 258 (535)
Q Consensus 179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y 258 (535)
...++.+|+|+||+||||||+|.+|.++|.++| ..+.++.-|.++...... .||.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G-~~~y~LDGDnvR~gL~~d---------LgFs--------------- 73 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG-YHVYLLDGDNVRHGLNRD---------LGFS--------------- 73 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC-CeEEEecChhHhhcccCC---------CCCC---------------
Confidence 356778999999999999999999999998874 566777777666544321 2222
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHH
Q 009432 259 EPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDI 338 (535)
Q Consensus 259 ~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvI 338 (535)
.+.......+....++...+.|. +||+-.+...++.|+.-.++..+- +++-|++.| ++++|.+|..++......
T Consensus 74 -~edR~eniRRvaevAkll~daG~--iviva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~-pl~vce~RDpKGLYkKAr 147 (197)
T COG0529 74 -REDRIENIRRVAEVAKLLADAGL--IVIVAFISPYREDRQMARELLGEG--EFIEVYVDT-PLEVCERRDPKGLYKKAR 147 (197)
T ss_pred -hHHHHHHHHHHHHHHHHHHHCCe--EEEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCC-CHHHHHhcCchHHHHHHH
Confidence 22222233455566777778998 999999999999998777766543 344455554 899999999887666554
Q ss_pred HHHhhc
Q 009432 339 ERMAGQ 344 (535)
Q Consensus 339 e~M~kr 344 (535)
..-.++
T Consensus 148 ~GeI~~ 153 (197)
T COG0529 148 AGEIKN 153 (197)
T ss_pred cCCCCC
Confidence 444333
No 20
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.23 E-value=7.6e-11 Score=133.03 Aligned_cols=152 Identities=22% Similarity=0.302 Sum_probs=105.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
..++|+|+|+||+||||+|++|++++.|. +..+.+++.++|++......... .+.. .+ ..
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~-~~~~~~~~~~~~rr~~~~~~~~~---------~~~~---------~~-~~ 273 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWN-GLQSRIFIHQAYRRRLERRGGAV---------SSPT---------GA-AE 273 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhc-CCCcEEEccchhHhhhccCCCCc---------CCCC---------CH-HH
Confidence 45799999999999999999999998776 45678999999988764211100 0000 00 11
Q ss_pred HHHHHHHHHHHHHHHHH-HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCc----eEEEEEEecCCHHHHHHhhcC-----
Q 009432 262 MEEAYRSSMLKAFTRTL-DEGNFTIVIVDDRNLRVADFAQFWATAKRSGY----EVYILEATYKDPAGCAARNVH----- 331 (535)
Q Consensus 262 ~ee~~~q~llk~akkaL-k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~----~V~vIe~~~~d~e~ci~RNih----- 331 (535)
.+......+.+.+...+ +.|. ++|+|++|.+...|..+.+.+++.|. .|+||++.|++ ...+++|+.
T Consensus 274 ~e~~~~~~~~~d~~~~v~~~Gg--vaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~-~~~i~~ni~r~~~~ 350 (664)
T PTZ00322 274 VEFRIAKAIAHDMTTFICKTDG--VAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNN-SETIRRNVLRAKEM 350 (664)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--EEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCC-HHHHHHHHHHHHhc
Confidence 22223333433333444 4577 99999999999999999999998875 79999998744 444666653
Q ss_pred --CCCHHHHHHHhhccccCCccceeec
Q 009432 332 --GFTLDDIERMAGQWEEAPTLYLQLD 356 (535)
Q Consensus 332 --~VpeEvIe~M~krfE~~p~~y~~lD 356 (535)
+..++.+++++++|+.....|..+|
T Consensus 351 ~~~~~e~~~~~~~~~~~~~~~~Ye~~~ 377 (664)
T PTZ00322 351 FPGAPEDFVDRYYEVIEQLEAVYKSLN 377 (664)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCC
Confidence 3445677888888887777777665
No 21
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.22 E-value=1.5e-10 Score=128.70 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
..+.+|+|+|+|||||||+|+.|++.+.+..|....++..|. ++..+.+ +..|+.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~-vr~~l~g------------------------e~~f~~ 444 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDV-VRKHLSS------------------------ELGFSK 444 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcH-HHHhccC------------------------CCCCCH
Confidence 456799999999999999999999987542333334545443 3332211 012333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
+.....+..+...+...++.|. +||+|+++...+.|..+++++++.+ .+.+|+|.+ +.++|.+|..+
T Consensus 445 ~er~~~~~~l~~~a~~v~~~Gg--~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~-p~e~l~~R~rr 511 (568)
T PRK05537 445 EDRDLNILRIGFVASEITKNGG--IAICAPIAPYRATRREVREMIEAYG-GFIEVHVAT-PLEVCEQRDRK 511 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--EEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcC-CHHHHHHhccc
Confidence 3333334445445667788998 9999999999999999999999876 355778876 78999999754
No 22
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.21 E-value=1.6e-10 Score=129.61 Aligned_cols=119 Identities=18% Similarity=0.095 Sum_probs=88.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
..+.+|+|+|+|||||||+|+.|++.+.+.+ ....+++.|+++..... ...|..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~-~~~~~l~~D~~r~~l~~-------------------------~~~~~~ 511 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALG-RHTYLLDGDNVRHGLNR-------------------------DLGFSD 511 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcC-CCEEEEcChhhhhccCC-------------------------CCCCCH
Confidence 4689999999999999999999999876543 33455677766543211 012444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV 330 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi 330 (535)
+.....++.+...+...++.|. +||+|+++..+.+|..+.++++.. .+++|+|.+ +.++|.+|+.
T Consensus 512 ~~r~~~~~~l~~~a~~~~~~G~--~Vivda~~~~~~~R~~~r~l~~~~--~~~~v~L~~-~~e~~~~R~~ 576 (632)
T PRK05506 512 ADRVENIRRVAEVARLMADAGL--IVLVSFISPFREERELARALHGEG--EFVEVFVDT-PLEVCEARDP 576 (632)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--EEEEECCCCCHHHHHHHHHhcccC--CeEEEEECC-CHHHHHhhCC
Confidence 4444455566666777789998 999999999999999888888765 556777776 7899999964
No 23
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.16 E-value=5.1e-10 Score=104.95 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=74.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...+|+|+|+|||||||+|+.|+..+...++ ...++..|.++.....+ ..|..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~-~v~~id~D~~~~~~~~~-------------------------~~~~~~ 56 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGY-PVEVLDGDAVRTNLSKG-------------------------LGFSKE 56 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEcCccHHHHHhcC-------------------------CCCChh
Confidence 4569999999999999999999998765432 34455666554321110 011111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
........+...+...+..|. +||+|+++.....|+.+.+++ ..+.+|++++ +.++|.+|+.+
T Consensus 57 ~r~~~~~~~~~~a~~~~~~g~--~vi~~~~~~~~~~~~~l~~~~----~~~~~v~l~~-~~e~~~~R~~~ 119 (175)
T PRK00889 57 DRDTNIRRIGFVANLLTRHGV--IVLVSAISPYRETREEVRANI----GNFLEVFVDA-PLEVCEQRDVK 119 (175)
T ss_pred hHHHHHHHHHHHHHHHHhCCC--EEEEecCCCCHHHHHHHHhhc----CCeEEEEEcC-CHHHHHHhCcc
Confidence 111122233333444557787 999999988777777666554 2456777776 78999999743
No 24
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=99.16 E-value=6.1e-11 Score=115.42 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=104.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
.|+.+.|+|+||||||+++|.-...+.--.....++.||+++...-. .+...++-. ..-
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpS-----------aD~a~keqR----------gr~ 60 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPS-----------ADKAAKEQR----------GRF 60 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcc-----------hhhhHHHHh----------chH
Confidence 47899999999999999998654332211122345788887543110 000000000 001
Q ss_pred HHHHHHHHHHHHH----------HH-----HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432 264 EAYRSSMLKAFTR----------TL-----DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR 328 (535)
Q Consensus 264 e~~~q~llk~akk----------aL-----k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R 328 (535)
+...+.|+.+..+ .- ..|. .++++|+.|+.+++|..|.++|+.+|+.+-+|++.. ...+|+++
T Consensus 61 ~~~iEk~ISaiqedtdwppqvrrisssgdynsgr-hiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas-~ide~Lqa 138 (291)
T KOG4622|consen 61 ECHIEKCISAIQEDTDWPPQVRRISSSGDYNSGR-HIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLAS-GIDEALQA 138 (291)
T ss_pred HHHHHHHHHHHhcccCCCchheeccccCCcCCCc-eEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhh-hHHHHHHh
Confidence 1233344443321 11 1233 488999999999999999999999999998888874 78999999
Q ss_pred hcC-----CCCHHHHHHHhhccccCCccceeecCCCCc
Q 009432 329 NVH-----GFTLDDIERMAGQWEEAPTLYLQLDIKTLF 361 (535)
Q Consensus 329 Nih-----~VpeEvIe~M~krfE~~p~~y~~lD~~sll 361 (535)
|.| .++-++|++|..++|- |..-..|+.+|++
T Consensus 139 NS~Rsda~k~~~dtiRki~EklE~-PD~~ea~e~NSit 175 (291)
T KOG4622|consen 139 NSHRSDAEKQKNDTIRKIFEKLED-PDEIEALEENSIT 175 (291)
T ss_pred ccccccchhCccHHHHHHHHhccC-ccHHHHHHhccee
Confidence 998 6778999999999996 5666678888887
No 25
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.14 E-value=4.7e-10 Score=107.96 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=76.1
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE 259 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~ 259 (535)
...|.+|||.|.|||||||++..+...+. +....+++.|+++...-.. . .+.+. ......
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~---~~~~v~i~~D~~r~~~p~~----~------------~~~~~-~~~~~~ 71 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG---GGGIVVIDADEFRQFHPDY----D------------ELLKA-DPDEAS 71 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT----TT-SEEE-GGGGGGGSTTH----H------------HHHHH-HCCCTH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc---CCCeEEEehHHHHHhccch----h------------hhhhh-hhhhhH
Confidence 36799999999999999999999987642 2345677888876644210 0 00000 000011
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432 260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR 328 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R 328 (535)
..............+..+++.|. .||+|+|+........+++.+++.||.|.++.+.+ +.+.++.|
T Consensus 72 ~~~~~~a~~~~~~~~~~a~~~~~--nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~-~~e~s~~r 137 (199)
T PF06414_consen 72 ELTQKEASRLAEKLIEYAIENRY--NIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAV-PPELSIER 137 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT----EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CEEEecCCCChhHHHHHHHHHHcCCceEEEEEEEC-CHHHHHHH
Confidence 11122233344455777889998 99999999998888889999999999999888886 66666655
No 26
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.08 E-value=1.5e-09 Score=104.40 Aligned_cols=119 Identities=17% Similarity=0.118 Sum_probs=80.6
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE 259 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~ 259 (535)
..++.+|+|+|++||||||||+.|...+...| ....++..|+++......+ .|.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~-~~~~~ld~d~~~~~~~~~~-------------------------~~~ 74 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELG-VSTYLLDGDNVRHGLCSDL-------------------------GFS 74 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC-CCEEEEcCEeHHhhhhhcC-------------------------CcC
Confidence 35678999999999999999999998775443 2233444555442211100 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
.......+..+...+...+..|. +||.+..+..+++|..+.++++..+ +++|+|.+ +.++|.+|.
T Consensus 75 ~~~~~~~~~~l~~~a~~~~~~G~--~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~-~~e~~~~R~ 139 (198)
T PRK03846 75 DADRKENIRRVGEVAKLMVDAGL--VVLTAFISPHRAERQMVRERLGEGE--FIEVFVDT-PLAICEARD 139 (198)
T ss_pred cccHHHHHHHHHHHHHHHhhCCC--EEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcC-CHHHHHhcC
Confidence 11222233445555667778898 8888888888999999999998765 44577776 789999994
No 27
>PRK14527 adenylate kinase; Provisional
Probab=99.03 E-value=1.6e-09 Score=103.31 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=87.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-hccC
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-EYCY 258 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-ey~y 258 (535)
...+.+|+|+|+|||||||+|+.|++++ + ...++.||+++....... ..+ .. .+.+. ...+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~----~--~~~is~gd~~r~~~~~~~----------~~~-~~-~~~~~~~g~~ 64 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQEL----G--LKKLSTGDILRDHVARGT----------ELG-QR-AKPIMEAGDL 64 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHh----C--CCCCCccHHHHHHHhcCc----------HHH-HH-HHHHHHcCCC
Confidence 3567899999999999999999999764 2 245688888876542100 000 00 00100 0111
Q ss_pred chHHHHHHHHHHHHHHHHHHHc--CCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC----
Q 009432 259 EPEMEEAYRSSMLKAFTRTLDE--GNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH---- 331 (535)
Q Consensus 259 ~~e~ee~~~q~llk~akkaLk~--G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih---- 331 (535)
.++ ..+...+...|.. +. .+|||+...+..++..|..+++..|..+ .++++.+ +.++|++|-..
T Consensus 65 ~p~------~~~~~l~~~~l~~~~~~--~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~-~~~~~~~Rl~~R~~~ 135 (191)
T PRK14527 65 VPD------ELILALIRDELAGMEPV--RVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEV-PDEELIRRIVERARQ 135 (191)
T ss_pred CcH------HHHHHHHHHHHhcCCCC--cEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEEC-CHHHHHHHHHcCccc
Confidence 111 1133334445544 34 6999997667888888888999988877 4577887 67777765332
Q ss_pred ----CCCHHHHHHHhhcccc
Q 009432 332 ----GFTLDDIERMAGQWEE 347 (535)
Q Consensus 332 ----~VpeEvIe~M~krfE~ 347 (535)
..+++.|++..+.|..
T Consensus 136 ~~r~dd~~~~~~~R~~~y~~ 155 (191)
T PRK14527 136 EGRSDDNEETVRRRQQVYRE 155 (191)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 3356666666666653
No 28
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.01 E-value=2.7e-09 Score=100.14 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=70.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh-ccCchHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME-YCYEPEME 263 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e-y~y~~e~e 263 (535)
+|+|+|+|||||||+|+.|++++ + ..+++.+|+++...... .. +| +.+...+.. ..+..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~----~--~~~is~~d~lr~~~~~~--~~----~~-----~~~~~~~~~g~~~~~~~- 62 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF----G--FTHLSAGDLLRAEIKSG--SE----NG-----ELIESMIKNGKIVPSEV- 62 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc----C--CeEEECChHHHHHHhcC--Ch----HH-----HHHHHHHHCCCcCCHHH-
Confidence 58999999999999999999864 2 35779999888654310 00 00 000000000 0111111
Q ss_pred HHHHHHHHHHHHHHHHc--CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432 264 EAYRSSMLKAFTRTLDE--GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV 330 (535)
Q Consensus 264 e~~~q~llk~akkaLk~--G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi 330 (535)
...+ +.+.+.. +. .+|||+...+.+++..|.+++......-.+|.+.+ +.++|++|-.
T Consensus 63 ---~~~l---l~~~~~~~~~~--~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~-~~~~~~~Rl~ 122 (183)
T TIGR01359 63 ---TVKL---LKNAIQADGSK--KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDC-PEEVMIKRLL 122 (183)
T ss_pred ---HHHH---HHHHHhccCCC--cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHh
Confidence 1122 2333322 45 89999998888888888877643222224677776 6777777633
No 29
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.00 E-value=5.3e-09 Score=98.18 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=66.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
..+.+|+|+|++||||||+|+.|.+.+...+ ....++..|+++..... +.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~-~~~~~~~~d~~r~~~~~--------------------------~~~~~ 57 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKY-SNVIYLDGDELREILGH--------------------------YGYDK 57 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcC-CcEEEEecHHHHhhcCC--------------------------CCCCH
Confidence 4667999999999999999999998875432 22334444443321110 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
....................|. +||+|+++...+.+. +++.....+.+|++.+ ++++|++|..+
T Consensus 58 ~~~~~~~~~~~~l~~~l~~~g~--~VI~~~~~~~~~~~~----~~~~~~~~~~~v~l~~-~~e~~~~R~~~ 121 (176)
T PRK05541 58 QSRIEMALKRAKLAKFLADQGM--IVIVTTISMFDEIYA----YNRKHLPNYFEVYLKC-DMEELIRRDQK 121 (176)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--EEEEEeCCcHHHHHH----HHHhhcCCeEEEEEeC-CHHHHHHhchh
Confidence 1111111111112222346787 999999886543333 3333333345677776 78999999654
No 30
>PRK14531 adenylate kinase; Provisional
Probab=98.99 E-value=4e-09 Score=100.27 Aligned_cols=132 Identities=17% Similarity=0.111 Sum_probs=82.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc-----cCc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY-----CYE 259 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey-----~y~ 259 (535)
-|+|+|+|||||||+|+.|++.+ | ...++.+|+++.+..... .+-+++.++ .+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~----g--~~~is~gd~lr~~~~~~~---------------~~~~~~~~~~~~G~~v~ 62 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH----G--LRHLSTGDLLRSEVAAGS---------------ALGQEAEAVMNRGELVS 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CCeEecccHHHHHHhcCC---------------HHHHHHHHHHHcCCCCC
Confidence 58899999999999999999874 2 346688999887643100 000111111 121
Q ss_pred hHHHHHHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC----C
Q 009432 260 PEMEEAYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH----G 332 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih----~ 332 (535)
.++ ... .+...|. .+. -+|||+...+..+...|..++.+.+..+ .++++.+ +.++|++|-.. .
T Consensus 63 d~l---~~~----~~~~~l~~~~~~--g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~-~~~~l~~Rl~~R~r~d 132 (183)
T PRK14531 63 DAL---VLA----IVESQLKALNSG--GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLEL-DDAVLIERLLARGRAD 132 (183)
T ss_pred HHH---HHH----HHHHHHhhccCC--cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEEC-CHHHHHHHhhcCCCCC
Confidence 111 111 1222222 233 5788999999999999988898888765 3677777 67777776432 4
Q ss_pred CCHHHHHHHhhcccc
Q 009432 333 FTLDDIERMAGQWEE 347 (535)
Q Consensus 333 VpeEvIe~M~krfE~ 347 (535)
-++++|.+-.+.|+.
T Consensus 133 D~~e~i~~Rl~~y~~ 147 (183)
T PRK14531 133 DNEAVIRNRLEVYRE 147 (183)
T ss_pred CCHHHHHHHHHHHHH
Confidence 556676665565554
No 31
>PRK14532 adenylate kinase; Provisional
Probab=98.96 E-value=3.6e-09 Score=100.13 Aligned_cols=119 Identities=20% Similarity=0.177 Sum_probs=74.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-h-ccCchHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-E-YCYEPEM 262 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-e-y~y~~e~ 262 (535)
.|+|.|+|||||||+|+.|++.+ | ...++.||+++.....- . ..+ +.+ +++. . -.+..++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~----g--~~~is~~d~lr~~~~~~--~--------~~~-~~~-~~~~~~g~~~~~~~ 63 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER----G--MVQLSTGDMLRAAIASG--S--------ELG-QRV-KGIMDRGELVSDEI 63 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc----C--CeEEeCcHHHHHHHHcC--C--------HHH-HHH-HHHHHCCCccCHHH
Confidence 48899999999999999999864 2 35679999988754210 0 000 001 1111 0 1122111
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR 328 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R 328 (535)
+...+.+.+ ..+..+. .+|+|+...+..++..|.++++..|..+ .+|.|.+ +.+++++|
T Consensus 64 ---~~~~~~~~~-~~~~~~~--g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v-~~~~~~~R 123 (188)
T PRK14532 64 ---VIALIEERL-PEAEAAG--GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKV-DDEALIER 123 (188)
T ss_pred ---HHHHHHHHH-hCcCccC--cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHH
Confidence 111111111 2223455 7899999999999999999998888766 6788887 66766665
No 32
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.94 E-value=7.4e-09 Score=99.35 Aligned_cols=127 Identities=21% Similarity=0.108 Sum_probs=74.0
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
.||+|-|.+.|||||+|+.|.+.+. . ....++.|.++.....+..... .|+.-.. +.-......
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~---~-p~~~l~~D~f~~~~~~~~~~~~----~g~~~~~--------~~~~~~~~~ 65 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP---E-PWLHLSVDTFVDMMPPGRYRPG----DGLEPAG--------DRPDGGPLF 65 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS---S--EEEEEHHHHHHHS-GGGGTST----TSEEEET--------TSEEE-HHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc---C-CeEEEecChHHhhcCcccccCC----ccccccc--------cCCchhHHH
Confidence 4899999999999999999998752 2 2246688877664322110000 0000000 000001223
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHH-HHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFW-ATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~-~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
...+..+...+..+++.|. .||||.++....+...++ ++.. |+.|++|.+.| +++++.+|...
T Consensus 66 ~~~~~~~~~~iaa~a~aG~--~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~C-pleil~~RE~~ 129 (174)
T PF07931_consen 66 RRLYAAMHAAIAAMARAGN--NVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRC-PLEILERRERA 129 (174)
T ss_dssp HHHHHHHHHHHHHHHHTT---EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CEEEecCccCcHHHHHHHHHHhC--CCceEEEEEEC-CHHHHHHHHHh
Confidence 3445566666777888998 999999998877645554 4443 89999999998 78888888764
No 33
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=98.92 E-value=3.2e-09 Score=111.72 Aligned_cols=148 Identities=18% Similarity=0.158 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCcCCCCCCCCC-cccchh-hhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432 143 PMQYPGESHLFPLRQLSPDKP-KVVNAL-HLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM 220 (535)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~p-~~v~~~-~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~ 220 (535)
.||+++....| .++.++| ++|.-. .++. .+.. ...+|+|+|+|||||||+|+..... ++ + .++..
T Consensus 234 efF~g~~~~~~---~~~~fdp~n~i~~~t~~~~---~~~~-~~eiV~~vgfp~sGks~f~a~~~~~---~~--y-~~vn~ 300 (422)
T KOG2134|consen 234 EFFLGVGVVTW---NSPGFDPKNVISRATSLCL---KLDG-HGEIVVAVGFPGSGKSTFAAKRVVP---NG--Y-KIVNA 300 (422)
T ss_pred HHhcccccccc---CCCCCCchhHHhhhcchhc---ccCC-CCcEEEEEecCCCCcchhhhhhccc---Cc--e-eEeec
Confidence 46777666667 5555577 333322 2221 1212 2389999999999999999876532 21 1 12121
Q ss_pred CceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH
Q 009432 221 DDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ 300 (535)
Q Consensus 221 DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~ 300 (535)
| - . ..++.|+.++.++|+.|. .||+|+||.+.+.|..
T Consensus 301 d--------~---------l------------------------g~~~~C~~~~~e~l~~~~--sVvidnt~pd~~sr~~ 337 (422)
T KOG2134|consen 301 D--------T---------L------------------------GTPQNCLLANAEALKHGK--SVVIDNTNPDAESRKY 337 (422)
T ss_pred c--------c---------C------------------------CCchhhHHHHHHHhhccc--EEeeCCCCcchHHHHH
Confidence 1 0 0 145688899999999999 9999999999999999
Q ss_pred HHHHHhhcCceEEEEEEecCCHHHHHHhhcC----------CCCHHHHHHHhhccccC
Q 009432 301 FWATAKRSGYEVYILEATYKDPAGCAARNVH----------GFTLDDIERMAGQWEEA 348 (535)
Q Consensus 301 f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----------~VpeEvIe~M~krfE~~ 348 (535)
|+++|++.++.+.++++.++ ++..+.|.. ...+.++..+.++|+.+
T Consensus 338 ~~~~a~e~~~p~rcf~~~~s--~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~p 393 (422)
T KOG2134|consen 338 YLDCATEREIPIRCFEMNSS--VEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKP 393 (422)
T ss_pred HhhhHHHhCccceeeeeccH--HHhhhccccchhhccchhcccccceeehhhccccCc
Confidence 99999999999999999863 333343332 34445555566666653
No 34
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=5e-09 Score=112.12 Aligned_cols=153 Identities=22% Similarity=0.346 Sum_probs=109.6
Q ss_pred CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccC
Q 009432 179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCY 258 (535)
Q Consensus 179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y 258 (535)
....+.+|+|+|+|++|||+++.+|.+++.|. |..+.+++..+|++........ +.+|
T Consensus 24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~-~~~tk~fn~g~yrr~~~~~~~s---------------------~~ff 81 (438)
T KOG0234|consen 24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWL-GVNTKVFNVGEYRREAVKKVDS---------------------EPFF 81 (438)
T ss_pred ccCCceEEEEecCCccCcchhhhhHHHHHHhh-ccccccccHHHHHHHHhccccc---------------------cccc
Confidence 45678999999999999999999999998876 4567788888887765432110 0122
Q ss_pred chHHHH------HHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHh-hcCceEEEEEEecCCHHHHHHhh
Q 009432 259 EPEMEE------AYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAK-RSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 259 ~~e~ee------~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr-~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
.++..+ .....++..+...|. .|. ++|.|+||.++..|+.++.+|+ +.+++|+||+..|+|+ ..+.+|
T Consensus 82 ~p~n~~~~~lr~~~a~~~l~D~~~~l~~~~g~--vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~-~ii~~N 158 (438)
T KOG0234|consen 82 LPDNAEASKLRKQLALLALNDLLHFLIKENGQ--VAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDP-NLINNN 158 (438)
T ss_pred ccCChhhhhhhHHHHHHHhhhHHHHhhccCCc--eEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCc-hhHHhh
Confidence 222111 111222233344443 455 9999999999999999999996 8999999999998654 334555
Q ss_pred cC-----------CCCHHHHHHHhhccccCCccceeec
Q 009432 330 VH-----------GFTLDDIERMAGQWEEAPTLYLQLD 356 (535)
Q Consensus 330 ih-----------~VpeEvIe~M~krfE~~p~~y~~lD 356 (535)
+. ...++.++.+.++.+.....|..+|
T Consensus 159 I~~~~~~spdy~~~~~e~a~~dfl~ri~~ye~~YePld 196 (438)
T KOG0234|consen 159 IREVKHVSPDYKGKDQEEALKDFLKRIRNYEKYYEPLD 196 (438)
T ss_pred hhhhhhcCCCcCCCCHHHHHHHHHHHHHhhhhccCcCC
Confidence 43 3447788888888888888998888
No 35
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.83 E-value=8.2e-08 Score=91.59 Aligned_cols=132 Identities=22% Similarity=0.129 Sum_probs=75.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
.+|+|+|++||||||+++.|...+ + ...+..|++....... +....+.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l----~--~~~i~gd~~~~~~~~r--------------------~~~~g~~~~~~~~ 57 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF----S--AKFIDGDDLHPAKNID--------------------KMSQGIPLTDEDR 57 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc----C--CEEECCcccCCHhHHH--------------------HHhcCCCCCcccc
Confidence 478999999999999999999864 1 2345556543211000 0000011111110
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh----hcCCCCHHHHH
Q 009432 264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR----NVHGFTLDDIE 339 (535)
Q Consensus 264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R----Nih~VpeEvIe 339 (535)
..+...+...+...++.+. ..+|+ +++++..+|. ++++.+..+.+|+|.+ +.++|.+| ..+..+.+++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~-~g~iv-~s~~~~~~R~----~~r~~~~~~~~v~l~a-~~~~l~~Rl~~R~~~~~~~~vl~ 130 (176)
T PRK09825 58 LPWLERLNDASYSLYKKNE-TGFIV-CSSLKKQYRD----ILRKSSPNVHFLWLDG-DYETILARMQRRAGHFMPPDLLQ 130 (176)
T ss_pred hHHHHHHHHHHHHHHhcCC-CEEEE-EEecCHHHHH----HHHhhCCCEEEEEEeC-CHHHHHHHHhcccCCCCCHHHHH
Confidence 0111111111211223222 13455 8888766665 6678888999999998 66666554 44577888999
Q ss_pred HHhhccccC
Q 009432 340 RMAGQWEEA 348 (535)
Q Consensus 340 ~M~krfE~~ 348 (535)
.+.+.||++
T Consensus 131 ~Q~~~~e~~ 139 (176)
T PRK09825 131 SQFDALERP 139 (176)
T ss_pred HHHHHcCCC
Confidence 888888853
No 36
>KOG2400 consensus Nuclear protein ZAP [Defense mechanisms]
Probab=98.81 E-value=1.1e-09 Score=88.62 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=43.2
Q ss_pred hhhhhhhHHHH--------hhCCceEEcccccCCcccceecccccccceeEEccCCCcccchhhhh
Q 009432 454 SNALSGLFQLY--------VKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAV 511 (535)
Q Consensus 454 ~~~l~~~~q~y--------~~~~K~v~W~D~~~~~gf~i~~~~~~~~~~~vig~~~~~~~~~~~~~ 511 (535)
+.+|++++|.. .+|||||||||++|+ +.+||||+||||||+- .+|-.-.|-+
T Consensus 6 ttsmadylqledwkppttsdngkkrvrwadieek-----rsqkkmraigfvvgqt-dwnrmmdpna 65 (82)
T KOG2400|consen 6 TTSMADYLQLEDWKPPTTSDNGKKRVRWADIEEK-----RSQKKMRAIGFVVGQT-DWNRMMDPNA 65 (82)
T ss_pred cchHHHHHhhhccCCCCcCCCcceeeeehhhHHH-----HHHHhhhhheeEeecc-cHhhhcCCCc
Confidence 45899999975 479999999999999 9999999999999984 5665555544
No 37
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.78 E-value=1.5e-07 Score=88.49 Aligned_cols=127 Identities=15% Similarity=0.044 Sum_probs=70.4
Q ss_pred EccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHH
Q 009432 189 RGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRS 268 (535)
Q Consensus 189 ~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q 268 (535)
.|++||||||||+.|...+ + ...+..|.+....... +....+.+.......+..
T Consensus 1 ~G~sGsGKSTla~~la~~l----~--~~~~~~d~~~~~~~~~--------------------~~~~g~~~~~~~~~~~~~ 54 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----H--AAFLDGDFLHPRRNIE--------------------KMASGEPLNDDDRKPWLQ 54 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----C--CeEEeCccCCchhhhc--------------------cccCCCCCChhhHHHHHH
Confidence 4999999999999999875 2 2344555432111000 000011121111111111
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHHHHHHhhc
Q 009432 269 SMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDDIERMAGQ 344 (535)
Q Consensus 269 ~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEvIe~M~kr 344 (535)
.+...+...+..+. ..||+ +++..+.+| +++++.++.+.+|+|.+ +.++|.+|-. +-.+.+++..+...
T Consensus 55 ~~~~~~~~~~~~~~-~~viv-~s~~~~~~r----~~~~~~~~~~~~v~l~a-~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~ 127 (163)
T PRK11545 55 ALNDAAFAMQRTNK-VSLIV-CSALKKHYR----DLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLVTQFET 127 (163)
T ss_pred HHHHHHHHHHHcCC-ceEEE-EecchHHHH----HHHHccCCCEEEEEEEC-CHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 22222222223333 14555 899876655 56666888999999998 7887776543 23457777777777
Q ss_pred cccC
Q 009432 345 WEEA 348 (535)
Q Consensus 345 fE~~ 348 (535)
||++
T Consensus 128 ~ep~ 131 (163)
T PRK11545 128 LQEP 131 (163)
T ss_pred cCCC
Confidence 7754
No 38
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.78 E-value=5.2e-08 Score=91.16 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=70.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-hccCchH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-EYCYEPE 261 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-ey~y~~e 261 (535)
..+|+|.|.|||||||+|+.|++.+ | ..+++.+|+++...... . ..+ +.+ +.+. ...+.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~----g--~~~~~~g~~~~~~~~~~--~--------~~~-~~~-~~~~~~~~~~~- 63 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY----G--FTHLSTGDLLRAEVASG--S--------ERG-KQL-QAIMESGDLVP- 63 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----C--CcEEeHHHHHHHHHhcC--C--------HHH-HHH-HHHHHCCCCCC-
Confidence 4589999999999999999999864 2 24568888877643210 0 000 111 1111 111221
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV 330 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi 330 (535)
.....+.+...+...+..|. .||+|+......+... +.+.......+|++.+ +.++|++|-.
T Consensus 64 -~~~~~~~l~~~~~~~~~~~~--~~i~dg~~~~~~q~~~---~~~~~~~~~~vi~l~~-~~~~~~~Rl~ 125 (188)
T TIGR01360 64 -LDTVLDLLKDAMVAALGTSK--GFLIDGYPREVKQGEE---FERRIGPPTLVLYFDC-SEDTMVKRLL 125 (188)
T ss_pred -HHHHHHHHHHHHHcccCcCC--eEEEeCCCCCHHHHHH---HHHcCCCCCEEEEEEC-CHHHHHHHHH
Confidence 12233344444555566777 8999997655444433 3344444556778887 6777777653
No 39
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.72 E-value=8.7e-08 Score=93.38 Aligned_cols=127 Identities=14% Similarity=0.157 Sum_probs=69.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCC--ccCCcchhhhh---hhc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGS--LRSKKPVTKMV---MEY 256 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~--~r~kk~l~kkv---~ey 256 (535)
.+.+|+++|+|||||||+|+.|++.+ + . .++...|+++....+....+.. ...+ +. ++-+.... ...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~----~-~-~~~~~~D~~r~~~r~~~~~~p~-l~~s~~~a-~~~~~~~~~~~~~~ 73 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR----A-I-DIVLSGDYLREFLRPYVDDEPV-LAKSVYDA-WEFYGSMTDENIVK 73 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc----C-C-eEEehhHHHHHHHHHhcCCCCC-cccccHHH-HHHcCCcchhHHHH
Confidence 46799999999999999999999864 2 2 3456666766554321110000 0000 00 00000000 000
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHH
Q 009432 257 CYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGC 325 (535)
Q Consensus 257 ~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~c 325 (535)
.|... ...++..+...+..++.+|. .||||+++.....+. .+...+. .++++.+++.++.
T Consensus 74 ~y~~q-~~~v~~~L~~va~~~l~~G~--sVIvEgv~l~p~~~~----~~~~~~v--~~i~l~v~d~e~l 133 (197)
T PRK12339 74 GYLDQ-ARAIMPGINRVIRRALLNGE--DLVIESLYFHPPMID----ENRTNNI--RAFYLYIRDAELH 133 (197)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHcCC--CEEEEecCcCHHHHH----HHHhcCe--EEEEEEeCCHHHH
Confidence 11111 12345556667888999999 999999999987764 3334444 3344433455544
No 40
>PRK06696 uridine kinase; Validated
Probab=98.72 E-value=7.8e-09 Score=101.34 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=37.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
..+++|.|+|.+||||||||++|++.+... |....++++|||+...
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~-g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKR-GRPVIRASIDDFHNPR 65 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeccccccCCH
Confidence 467899999999999999999999987544 3445566899998754
No 41
>PRK07667 uridine kinase; Provisional
Probab=98.69 E-value=1.9e-07 Score=89.88 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=38.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
..+.+|.|+|.+||||||||+.|.+.+... |..+.+++.|||+...
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~-~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQE-GIPFHIFHIDDYIVER 60 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEEcCcccchh
Confidence 445899999999999999999999987544 4456788999988754
No 42
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.68 E-value=1.1e-07 Score=89.51 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=71.5
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA 265 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~ 265 (535)
|+|+|.|||||||+|+.|++.+ + ..+++.||+++....... . ..+.+...+..-.+.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~----~--~~~i~~~~l~~~~~~~~~----------~-~~~~~~~~~~~g~~~~~---- 60 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY----G--LPHISTGDLLREEIASGT----------E-LGKKAKEYIDSGKLVPD---- 60 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc----C--CeEEECcHHHHHHHhcCC----------h-HHHHHHHHHHcCCccCH----
Confidence 7999999999999999999864 2 457799998876532100 0 00000000000001110
Q ss_pred HHHHHHHHHHHHHHc---CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 266 YRSSMLKAFTRTLDE---GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 266 ~~q~llk~akkaLk~---G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
..+.+.+...|.. +. .+|||+...+..++..|.++....+....+|.+.+ +.++|++|-
T Consensus 61 --~~~~~l~~~~l~~~~~~~--~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~Rl 122 (194)
T cd01428 61 --EIVIKLLKERLKKPDCKK--GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDV-PDEVLIERI 122 (194)
T ss_pred --HHHHHHHHHHHhcccccC--CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence 1222334444443 44 78999977777888877777765556667888887 677777764
No 43
>PRK06547 hypothetical protein; Provisional
Probab=98.68 E-value=9.3e-08 Score=91.21 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=80.9
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh----
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME---- 255 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e---- 255 (535)
+..+.+|+++|.+||||||||+.|++.+ + ..+++.|+|+..... +. ...+.+...+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~----~--~~~~~~d~~~~~~~~-~~-----------~~~~~l~~~~l~~g~~ 73 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART----G--FQLVHLDDLYPGWHG-LA-----------AASEHVAEAVLDEGRP 73 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh----C--CCeecccceeccccc-CC-----------hHHHHHHHHHHhCCCC
Confidence 4557799999999999999999999864 2 347788998754211 00 000000000000
Q ss_pred --ccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCC
Q 009432 256 --YCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGF 333 (535)
Q Consensus 256 --y~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~V 333 (535)
+.|+-... .... ...+..+. +|||+++..... .+.+++.+ +..+.+|++.+ +.++|++|-...-
T Consensus 74 ~~~~yd~~~~-----~~~~--~~~l~~~~--vVIvEG~~al~~---~~r~~~d~-~g~v~~I~ld~-~~~vr~~R~~~Rd 139 (172)
T PRK06547 74 GRWRWDWANN-----RPGD--WVSVEPGR--RLIIEGVGSLTA---ANVALASL-LGEVLTVWLDG-PEALRKERALARD 139 (172)
T ss_pred ceecCCCCCC-----CCCC--cEEeCCCC--eEEEEehhhccH---HHHHHhcc-CCCEEEEEEEC-CHHHHHHHHHhcC
Confidence 00000000 0000 00122344 899999876533 34555554 44467888886 7888888776543
Q ss_pred CHHHHHHHhhccccCCccceee
Q 009432 334 TLDDIERMAGQWEEAPTLYLQL 355 (535)
Q Consensus 334 peEvIe~M~krfE~~p~~y~~l 355 (535)
.. ...++.+|.+....|..-
T Consensus 140 ~~--~~~~~~~w~~~e~~~~~~ 159 (172)
T PRK06547 140 PD--YAPHWEMWAAQEERHFAR 159 (172)
T ss_pred ch--hhHHHHHHHHHHHHHHhc
Confidence 33 777788888877766543
No 44
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.67 E-value=1.8e-07 Score=91.01 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=68.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
.|+|.|.|||||||+|+.|++.+ + ..+++.+|+++....... ..+ +.+...+......+ ..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~----~--~~~is~~dl~r~~~~~~~----------~~~-~~~~~~~~~g~~~p--~~ 62 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY----G--IPHISTGDMLRAAVKAGT----------ELG-KEAKSYMDAGELVP--DE 62 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CcEEECCccHHHHHhccc----------hHH-HHHHHHHHcCCcCC--HH
Confidence 48899999999999999999874 2 356788888886543100 000 11110000000101 01
Q ss_pred HHHHHHHHHHHHHHHc---CCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432 265 AYRSSMLKAFTRTLDE---GNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR 328 (535)
Q Consensus 265 ~~~q~llk~akkaLk~---G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R 328 (535)
.+.+.+...|.. +. -+|||+...+..+...|.+++...+..+ .+|.+.+ +.+++++|
T Consensus 63 ----~~~~~i~~~l~~~~~~~--g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~-~~~~~~~R 123 (215)
T PRK00279 63 ----IVIGLVKERLAQPDCKN--GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDV-PDEELVER 123 (215)
T ss_pred ----HHHHHHHHHHhccCccC--CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEEC-CHHHHHHH
Confidence 112222333332 33 6899997667777777777777777765 6788887 55555554
No 45
>PLN02200 adenylate kinase family protein
Probab=98.64 E-value=3.2e-07 Score=91.50 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=76.3
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc-cC
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY-CY 258 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey-~y 258 (535)
+..+.+|+|+|.|||||||+|+.|++++ | ...++.+|+++.......+ ....+...+... .+
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~----g--~~his~gdllR~~i~~~s~-----------~~~~i~~~~~~G~~v 102 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETF----G--FKHLSAGDLLRREIASNSE-----------HGAMILNTIKEGKIV 102 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh----C--CeEEEccHHHHHHHhccCh-----------hHHHHHHHHHcCCCC
Confidence 5567899999999999999999999864 2 3467899998865432100 000111100000 11
Q ss_pred chHHHHHHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----
Q 009432 259 EPEMEEAYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----- 331 (535)
Q Consensus 259 ~~e~ee~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----- 331 (535)
..++ +...+.+.|. .+. .+|||+...+..++..|.+++.. ..-.+|.+.+ +.+++++|-..
T Consensus 103 p~e~-------~~~~l~~~l~~~~~~--~~ILDG~Prt~~q~~~l~~~~~~--~pd~vi~Ld~-~~e~~~~Rl~~R~~~r 170 (234)
T PLN02200 103 PSEV-------TVKLIQKEMESSDNN--KFLIDGFPRTEENRIAFERIIGA--EPNVVLFFDC-PEEEMVKRVLNRNQGR 170 (234)
T ss_pred cHHH-------HHHHHHHHHhcCCCC--eEEecCCcccHHHHHHHHHHhcc--CCCEEEEEEC-CHHHHHHHHHcCcCCC
Confidence 1111 1112222332 234 68999987777777766655521 1225666776 56666555221
Q ss_pred -CCCHHHHHHHhhccc
Q 009432 332 -GFTLDDIERMAGQWE 346 (535)
Q Consensus 332 -~VpeEvIe~M~krfE 346 (535)
.-+.+.+++..+.|.
T Consensus 171 ~dd~~e~~~~Rl~~y~ 186 (234)
T PLN02200 171 VDDNIDTIKKRLKVFN 186 (234)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 223455555555444
No 46
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.63 E-value=1.8e-07 Score=90.73 Aligned_cols=115 Identities=21% Similarity=0.187 Sum_probs=64.5
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA 265 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~ 265 (535)
|+|.|.|||||||+|+.|++.+ | ..+++.+|+++...... .. . + ..+...+....+.++ +
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~----g--~~~is~gdllr~~~~~~--~~----~----~-~~~~~~~~~g~~vp~--~- 61 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY----G--LPHISTGDLLRAEIKAG--TP----L----G-KKAKEYMEKGELVPD--E- 61 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc----C--CCeeehhHHHHHhhccc--cH----H----H-HHHHHHHhCCCCCCH--H-
Confidence 7889999999999999999764 2 35678999887654310 00 0 0 001000001111111 1
Q ss_pred HHHHHHHHHHHHHHc----CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432 266 YRSSMLKAFTRTLDE----GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR 328 (535)
Q Consensus 266 ~~q~llk~akkaLk~----G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R 328 (535)
.+.+.+...|.. +. .+|||+..-+..+...|.+++.. ....+|.+.+ +.++|++|
T Consensus 62 ---~~~~l~~~~i~~~~~~~~--~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~-~~~~~~~R 120 (210)
T TIGR01351 62 ---IVNQLVKERLTQNQDNEN--GFILDGFPRTLSQAEALDALLKE--KIDAVIELDV-PDEELVER 120 (210)
T ss_pred ---HHHHHHHHHHhcCcccCC--cEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEEC-CHHHHHHH
Confidence 122223333333 44 78999966667777666665542 2335777776 55666554
No 47
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.57 E-value=3.4e-07 Score=86.62 Aligned_cols=122 Identities=20% Similarity=0.142 Sum_probs=80.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
.+.++|+|+||+||||||+|-+|.+.+.+.| ....++.-|.++.-.... +|| ..
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrg-kl~Y~LDGDNvRhGLN~D---------L~F----------------~a 82 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRG-KLTYILDGDNVRHGLNKD---------LGF----------------KA 82 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcC-ceEEEecCcccccccccc---------cCc----------------ch
Confidence 3456999999999999999999999988765 456677777766543210 121 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCC
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGF 333 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~V 333 (535)
+.......++-+.++...+.|. +.|-.-...++.+|..-..+..+. .+.-|++++ ++++|.+|.-++.
T Consensus 83 ~dR~ENIRRigeVaKLFADag~--iciaSlISPYR~dRdacRel~~~~--~FiEvfmdv-pl~vcE~RDPKGL 150 (207)
T KOG0635|consen 83 EDRNENIRRIGEVAKLFADAGV--ICIASLISPYRKDRDACRELLPEG--DFIEVFMDV-PLEVCEARDPKGL 150 (207)
T ss_pred hhhhhhHHHHHHHHHHHhccce--eeeehhcCchhccHHHHHHhccCC--CeEEEEecC-cHHHhhccCchhH
Confidence 1111122233344455556776 677777778888888777777665 344455555 7899999886644
No 48
>PRK01184 hypothetical protein; Provisional
Probab=98.56 E-value=3.5e-07 Score=86.35 Aligned_cols=38 Identities=34% Similarity=0.422 Sum_probs=28.5
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
++|+|+|+|||||||+|+. ++.+ | ..+++.||+++...
T Consensus 2 ~~i~l~G~~GsGKsT~a~~-~~~~----g--~~~i~~~d~lr~~~ 39 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI-AREM----G--IPVVVMGDVIREEV 39 (184)
T ss_pred cEEEEECCCCCCHHHHHHH-HHHc----C--CcEEEhhHHHHHHH
Confidence 4899999999999999984 4332 2 34678888887654
No 49
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.52 E-value=5.1e-07 Score=83.03 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=31.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+.+.+|+|+|+|||||||+|+.|++.+ + ..+++.|+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l----~--~~~~d~d~~~~~ 41 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRL----G--YDFIDTDHLIEA 41 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh----C--CCEEEChHHHHH
Confidence 456799999999999999999999875 2 245577776543
No 50
>PRK02496 adk adenylate kinase; Provisional
Probab=98.52 E-value=7.2e-07 Score=84.36 Aligned_cols=137 Identities=18% Similarity=0.137 Sum_probs=78.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
-|+|.|.|||||||+|+.|++.+ + ..+++.||+++....... .. + ..+...+....+.++ +
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~----~--~~~i~~~~~~~~~~~~~~------~~----g-~~~~~~~~~g~~~~~--~ 63 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL----H--IPHISTGDILRQAIKEQT------PL----G-IKAQGYMDKGELVPD--Q 63 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CcEEEhHHHHHHHHhccC------hh----H-HHHHHHHHCCCccCH--H
Confidence 47889999999999999999864 2 346688888876542100 00 0 000000000111111 1
Q ss_pred HHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCc-eEEEEEEecCCHHHHHHhhc----CCCCHH
Q 009432 265 AYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGY-EVYILEATYKDPAGCAARNV----HGFTLD 336 (535)
Q Consensus 265 ~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~-~V~vIe~~~~d~e~ci~RNi----h~VpeE 336 (535)
. ....+...|. ... .+|+|+.-.+..+...+..+++..+. ...+|.+.+ +.++|.+|-. ...+++
T Consensus 64 -~---~~~~l~~~l~~~~~~~--g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~~dd~~~ 136 (184)
T PRK02496 64 -L---VLDLVQERLQQPDAAN--GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDV-PDDVVVERLLARGRKDDTEE 136 (184)
T ss_pred -H---HHHHHHHHHhCcCccC--CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHhcCCCCCCCHH
Confidence 1 1122223332 223 58999876666676666666666654 346677776 6777777643 245678
Q ss_pred HHHHHhhcccc
Q 009432 337 DIERMAGQWEE 347 (535)
Q Consensus 337 vIe~M~krfE~ 347 (535)
.+++..+.|+.
T Consensus 137 ~~~~r~~~y~~ 147 (184)
T PRK02496 137 VIRRRLEVYRE 147 (184)
T ss_pred HHHHHHHHHHH
Confidence 88877777775
No 51
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.51 E-value=1.1e-06 Score=84.49 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=80.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH-HH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE-ME 263 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e-~e 263 (535)
-|++.|.|||||||+|+.|++.+ + ...++.+|+++.....- .++-+++-.|.-..+ +.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~----~--i~hlstgd~~r~~~~~~---------------t~lg~~~k~~i~~g~lv~ 60 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL----G--LPHLDTGDILRAAIAER---------------TELGEEIKKYIDKGELVP 60 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh----C--CcEEcHhHHhHhhhccC---------------ChHHHHHHHHHHcCCccc
Confidence 37899999999999999999874 2 23458889988764310 011111111111111 11
Q ss_pred HHHHHHHHH-HHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcCCC-----CHH
Q 009432 264 EAYRSSMLK-AFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVHGF-----TLD 336 (535)
Q Consensus 264 e~~~q~llk-~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih~V-----peE 336 (535)
......+++ .+..+ .... .+|+|+---+..+.+.+..+..++|.+. .++.|.+ +.+..+.|-.... ..+
T Consensus 61 d~i~~~~v~~rl~~~--d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~-~~~~~~~r~~~r~~r~dd~~~ 136 (178)
T COG0563 61 DEIVNGLVKERLDEA--DCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDV-PEELLLERLLGRRVREDDNEE 136 (178)
T ss_pred hHHHHHHHHHHHHhh--cccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeC-CHHHHHHHHhCccccccCCHH
Confidence 112222222 22222 2222 6899997667777777777777777554 6677776 4477777766543 566
Q ss_pred HHHHHhhccc
Q 009432 337 DIERMAGQWE 346 (535)
Q Consensus 337 vIe~M~krfE 346 (535)
.+++....|.
T Consensus 137 ~~~~R~~~y~ 146 (178)
T COG0563 137 TVKKRLKVYH 146 (178)
T ss_pred HHHHHHHHHH
Confidence 7666665555
No 52
>PTZ00301 uridine kinase; Provisional
Probab=98.50 E-value=1.3e-06 Score=86.16 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=35.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCC-cEEEeCCceeeeh
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDA-PRIHSMDDYFMTE 227 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~-~rIlS~DDyfr~~ 227 (535)
+.+||.|.|.|||||||||+.|.+.+....+.. +.+++.|+|+...
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~ 48 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQ 48 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCc
Confidence 458999999999999999999987764433333 3478899988653
No 53
>PRK13946 shikimate kinase; Provisional
Probab=98.49 E-value=8.9e-07 Score=84.43 Aligned_cols=128 Identities=17% Similarity=0.206 Sum_probs=71.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
.+..|+|+|++||||||+|+.|++.+ | . .++..|.++.... +. .-.++... |.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L----g-~-~~id~D~~~~~~~-g~-------------~~~e~~~~-----~g-- 61 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML----G-L-PFLDADTEIERAA-RM-------------TIAEIFAA-----YG-- 61 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----C-C-CeECcCHHHHHHh-CC-------------CHHHHHHH-----HC--
Confidence 34579999999999999999999875 2 2 2556675433221 10 00001100 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeC--CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CC----
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDD--RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GF---- 333 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDa--TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~V---- 333 (535)
+..++....+.+...+..+. .||..+ ++.....|..+. ..+ .+|+|.+ +++.+++|... ..
T Consensus 62 -e~~~~~~e~~~l~~l~~~~~--~Vi~~ggg~~~~~~~r~~l~----~~~---~~v~L~a-~~e~~~~Rl~~r~~rp~~~ 130 (184)
T PRK13946 62 -EPEFRDLERRVIARLLKGGP--LVLATGGGAFMNEETRAAIA----EKG---ISVWLKA-DLDVLWERVSRRDTRPLLR 130 (184)
T ss_pred -HHHHHHHHHHHHHHHHhcCC--eEEECCCCCcCCHHHHHHHH----cCC---EEEEEEC-CHHHHHHHhcCCCCCCcCC
Confidence 11122222333445555665 667663 566666555443 333 3467776 78888877653 21
Q ss_pred ---CHHHHHHHhhcccc
Q 009432 334 ---TLDDIERMAGQWEE 347 (535)
Q Consensus 334 ---peEvIe~M~krfE~ 347 (535)
..+.|+++++++.+
T Consensus 131 ~~~~~~~i~~~~~~R~~ 147 (184)
T PRK13946 131 TADPKETLARLMEERYP 147 (184)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 24677777766664
No 54
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.46 E-value=1.5e-06 Score=94.71 Aligned_cols=135 Identities=19% Similarity=0.126 Sum_probs=77.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcccccc--ccccccCCccCCcchh-hhh--hhc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDS--DVSKSSGSLRSKKPVT-KMV--MEY 256 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~--~~sk~~g~~r~kk~l~-kkv--~ey 256 (535)
.+.+|+|+|++|+||||+|..|+.++ + ...+++.|.++.....-+... +.-....++ .++.+. ... ...
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l----g-~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~-A~~~~~~~~~~~~~~ 327 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL----G-ITRIVSTDAVREVLRAMVSKDLLPTLHASTFN-AWRALLPPGEGLPAE 327 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc----C-CcEEeehhHHHHHHHhhcchhhccchhhchhh-HHhhccCcccccccc
Confidence 58999999999999999999999875 2 235778776654322111000 000000000 000000 000 000
Q ss_pred cCchHHHHH-------HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432 257 CYEPEMEEA-------YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR 328 (535)
Q Consensus 257 ~y~~e~ee~-------~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R 328 (535)
.|....-.. +...+...+.+++++|. +||||++++.+..+. .+...+..+..++|.++|.++..+|
T Consensus 328 ~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~--SvIIEGVHl~P~~i~----~~~~~~~~~i~flv~isdeeeH~~R 400 (475)
T PRK12337 328 PTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGT--SLVLEGVHLVPGYLR----HPYQAGALVVPMLVTLPDEALHRRR 400 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--eEEEECCCCCHHHHH----HHHhcCCceEEEEEEECCHHHHHHH
Confidence 011111111 11223345688899999 999999999988754 5667777788788888787765543
No 55
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=2.9e-07 Score=103.22 Aligned_cols=8 Identities=13% Similarity=0.426 Sum_probs=4.2
Q ss_pred hhhhHHHH
Q 009432 457 LSGLFQLY 464 (535)
Q Consensus 457 l~~~~q~y 464 (535)
|-.|||+-
T Consensus 1043 mDslLeaL 1050 (1102)
T KOG1924|consen 1043 MDSLLEAL 1050 (1102)
T ss_pred HHHHHHHH
Confidence 44556654
No 56
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=5.1e-06 Score=79.00 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=99.4
Q ss_pred CCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh-ccccccccccccCCccCCcchhhh
Q 009432 174 QPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV-EKVEDSDVSKSSGSLRSKKPVTKM 252 (535)
Q Consensus 174 ~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~-e~v~~~~~sk~~g~~r~kk~l~kk 252 (535)
+++....+.+-+|++.|..||||||++++|.+.+. ...+..||+--... ++.. -| ..+
T Consensus 3 p~~~t~~~~k~~i~vmGvsGsGKSTigk~L~~~l~------~~F~dgDd~Hp~~NveKM~-------~G-----ipL--- 61 (191)
T KOG3354|consen 3 PKHKTMGPFKYVIVVMGVSGSGKSTIGKALSEELG------LKFIDGDDLHPPANVEKMT-------QG-----IPL--- 61 (191)
T ss_pred CCCcccCCCceeEEEEecCCCChhhHHHHHHHHhC------CcccccccCCCHHHHHHHh-------cC-----CCC---
Confidence 34555667888999999999999999999998762 23446777643321 1100 00 000
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHh------hcCceEEEEEEecCCHHHHH
Q 009432 253 VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAK------RSGYEVYILEATYKDPAGCA 326 (535)
Q Consensus 253 v~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr------~~G~~V~vIe~~~~d~e~ci 326 (535)
-+.+...+ .+.+...+.+.|..|+ .||+-+..+++.+|.-+..-.+ .-..++.||.+.. +.++.+
T Consensus 62 -----nD~DR~pW-L~~i~~~~~~~l~~~q--~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~ 132 (191)
T KOG3354|consen 62 -----NDDDRWPW-LKKIAVELRKALASGQ--GVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVIL 132 (191)
T ss_pred -----CcccccHH-HHHHHHHHHHHhhcCC--eEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHH
Confidence 11111221 2344455677778898 9999998888888876665333 1235678888876 667666
Q ss_pred Hh----hcCCCCHHHHHHHhhccccCCc---cceeecCCC
Q 009432 327 AR----NVHGFTLDDIERMAGQWEEAPT---LYLQLDIKT 359 (535)
Q Consensus 327 ~R----Nih~VpeEvIe~M~krfE~~p~---~y~~lD~~s 359 (535)
+| -.|-.+.+.++.++.-+|.+.. ..+.+|+.+
T Consensus 133 ~Rl~~R~gHFMp~~lleSQf~~LE~p~~~e~div~isv~~ 172 (191)
T KOG3354|consen 133 KRLKKRKGHFMPADLLESQFATLEAPDADEEDIVTISVKT 172 (191)
T ss_pred HHHhhcccccCCHHHHHHHHHhccCCCCCccceEEEeecc
Confidence 54 4568899999999998886532 244455544
No 57
>PRK07261 topology modulation protein; Provisional
Probab=98.43 E-value=1e-06 Score=83.55 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=27.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
-|+|+|.|||||||||++|.+.+ + ..+++.|+++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~----~--~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY----N--CPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh----C--CCeEecCCEEe
Confidence 48999999999999999998764 2 23557787764
No 58
>PRK08233 hypothetical protein; Provisional
Probab=98.41 E-value=2.4e-06 Score=79.50 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=30.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
.++|++.|.|||||||||+.|++.+ + ...+++.|+++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l----~-~~~~~~~d~~~~ 40 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL----K-NSKALYFDRYDF 40 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC----C-CCceEEECCEEc
Confidence 5799999999999999999999875 1 135667777654
No 59
>PRK14528 adenylate kinase; Provisional
Probab=98.40 E-value=2.5e-06 Score=81.75 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=75.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH-H
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM-E 263 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~-e 263 (535)
-|++.|.|||||||+|+.|++.+ + ..+++.+|+++..... +. .+-.++..|.-..+. .
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~----~--~~~is~~~~lr~~~~~---~~------------~~g~~~~~~~~~g~lvp 61 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL----S--IPQISTGDILREAVKN---QT------------AMGIEAKRYMDAGDLVP 61 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CCeeeCCHHHHHHhhc---CC------------HHHHHHHHHHhCCCccC
Confidence 47889999999999999998764 2 2466889998765421 00 000001111100000 0
Q ss_pred HHHHHHHHHHHHHHHHcC-CceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC--------CC
Q 009432 264 EAYRSSMLKAFTRTLDEG-NFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH--------GF 333 (535)
Q Consensus 264 e~~~q~llk~akkaLk~G-~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih--------~V 333 (535)
.. .+...+.+.|.+- .-.-+|||+--.+..+-..|.++....+..+ .+|.+.+ +.++|++|-.. .-
T Consensus 62 ~~---~~~~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~-~~~~~~~Rl~~R~~~~gr~dd 137 (186)
T PRK14528 62 DS---VVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEV-PDGELLKRLLGRAEIEGRADD 137 (186)
T ss_pred HH---HHHHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHhcCccccCCCCC
Confidence 00 1112223333221 1126899995455666666777766655444 5777777 66666554321 34
Q ss_pred CHHHHHHHhhcccc
Q 009432 334 TLDDIERMAGQWEE 347 (535)
Q Consensus 334 peEvIe~M~krfE~ 347 (535)
++|+|.+-...|..
T Consensus 138 ~~e~i~~Rl~~y~~ 151 (186)
T PRK14528 138 NEATIKNRLDNYNK 151 (186)
T ss_pred CHHHHHHHHHHHHH
Confidence 56666666655553
No 60
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.39 E-value=1.9e-06 Score=78.11 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=28.1
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
|+|+|+|||||||+|+.|++++ + . ..++.|+++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l----~-~-~~~~~d~~~~~ 36 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL----G-L-PFVDLDELIEQ 36 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh----C-C-CEEEchHHHHH
Confidence 7899999999999999999875 2 2 35688877554
No 61
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.39 E-value=2.2e-06 Score=78.64 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=76.2
Q ss_pred EEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHH
Q 009432 188 LRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYR 267 (535)
Q Consensus 188 L~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~ 267 (535)
|.|.|||||||+|+.|++.+ + ...++.+|+.+...... . .+-+++.+++-..+.. --
T Consensus 1 i~G~PgsGK~t~~~~la~~~----~--~~~is~~~llr~~~~~~--s-------------~~g~~i~~~l~~g~~v--p~ 57 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY----G--LVHISVGDLLREEIKSD--S-------------ELGKQIQEYLDNGELV--PD 57 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH----T--SEEEEHHHHHHHHHHTT--S-------------HHHHHHHHHHHTTSS----H
T ss_pred CcCCCCCChHHHHHHHHHhc----C--cceechHHHHHHHHhhh--h-------------HHHHHHHHHHHhhccc--hH
Confidence 57999999999999999874 2 45778888888764310 0 0011111111111110 00
Q ss_pred HHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcCCCCHHHHHHHhh
Q 009432 268 SSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVHGFTLDDIERMAG 343 (535)
Q Consensus 268 q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih~VpeEvIe~M~k 343 (535)
+.+.+.+...|. ... -+|||+-=.+..+...|.++....+..+ .+|.+.| +.+.|++|-.. .+.+.|++-..
T Consensus 58 ~~v~~ll~~~l~~~~~~~--g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~-~~~~~~~R~~~-d~~~~i~~Rl~ 133 (151)
T PF00406_consen 58 ELVIELLKERLEQPPCNR--GFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDC-PDETLIERLSQ-DNEEVIKKRLE 133 (151)
T ss_dssp HHHHHHHHHHHHSGGTTT--EEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE---HHHHHHHHHT-GSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccc--eeeeeeccccHHHHHHHHHHHhhcccchheeecccc-chhhhhhhccc-CCHHHHHHHHH
Confidence 112223333333 234 7899996666777777776555566666 7888887 67888888555 55666666555
Q ss_pred ccc
Q 009432 344 QWE 346 (535)
Q Consensus 344 rfE 346 (535)
.|.
T Consensus 134 ~y~ 136 (151)
T PF00406_consen 134 EYR 136 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 62
>PRK06217 hypothetical protein; Validated
Probab=98.39 E-value=2e-06 Score=81.74 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=30.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
-|+|.|.|||||||||++|.+.+ + ..+++.|+++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l----~--~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL----D--IPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc----C--CcEEEcCceeec
Confidence 59999999999999999999875 2 346788988764
No 63
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.38 E-value=4.6e-06 Score=78.00 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=24.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
++|++.|++||||||+++.|++.+...|
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g 28 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARG 28 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999875443
No 64
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.33 E-value=1.1e-05 Score=76.58 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=24.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..+|++.|+.||||||+++.|.+.+...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4699999999999999999999887544
No 65
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.33 E-value=3e-06 Score=81.73 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhh
Q 009432 266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAG 343 (535)
Q Consensus 266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~k 343 (535)
+|..-.+.+...++.|+ +||+|- ++..+..+.+.+.-.+++|++..++.++..+|... ..+++.|+++.+
T Consensus 79 ~YGt~~~~i~~~~~~g~--~~i~d~------~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~ 150 (186)
T PRK14737 79 YYGTPKAFIEDAFKEGR--SAIMDI------DVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIE 150 (186)
T ss_pred eecCcHHHHHHHHHcCC--eEEEEc------CHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45556666788899999 999886 23344445554544445677765567777666544 346666766655
Q ss_pred c
Q 009432 344 Q 344 (535)
Q Consensus 344 r 344 (535)
+
T Consensus 151 ~ 151 (186)
T PRK14737 151 N 151 (186)
T ss_pred H
Confidence 4
No 66
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.32 E-value=4.2e-06 Score=80.81 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=36.1
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..++.+|.|+|.+||||||||+.|...+ ++..+.+++.|+|+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l---~~~~~~~i~~D~~~~~ 46 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEEL---GDESIAVIPQDSYYKD 46 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh---CCCceEEEeCCccccC
Confidence 3578899999999999999999999875 2334567899998764
No 67
>PRK00625 shikimate kinase; Provisional
Probab=98.30 E-value=3.1e-06 Score=80.91 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=29.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.|+|+|+|||||||+|+.|++.+ + . .+++.|+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l----~-~-~~id~D~~I~~ 37 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL----S-L-PFFDTDDLIVS 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C-C-CEEEhhHHHHH
Confidence 58999999999999999999875 2 2 35688887654
No 68
>PRK08118 topology modulation protein; Reviewed
Probab=98.29 E-value=2.5e-06 Score=80.71 Aligned_cols=35 Identities=40% Similarity=0.550 Sum_probs=27.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
-|+|+|.|||||||||++|.+.+ + ..+++.|+++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l----~--~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL----N--IPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CCceecchhhc
Confidence 38899999999999999999875 2 34567787664
No 69
>PRK08356 hypothetical protein; Provisional
Probab=98.29 E-value=8.4e-06 Score=78.35 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=28.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..++|+|+|+|||||||+|+.|.+ . | . .+++.+|..+.
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~----~-g-~-~~is~~~~~~~ 41 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE----K-G-F-CRVSCSDPLID 41 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH----C-C-C-cEEeCCCcccc
Confidence 346899999999999999999953 2 3 3 36688776543
No 70
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.29 E-value=3.7e-06 Score=80.14 Aligned_cols=62 Identities=15% Similarity=0.031 Sum_probs=39.4
Q ss_pred HHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhh
Q 009432 273 AFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAG 343 (535)
Q Consensus 273 ~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~k 343 (535)
.+...|+.|. .||+|++ +..+.++++.++..+.+|.+.+ +.+++.+|-.+ ..+.+.+++...
T Consensus 81 ~~~~~l~~g~--~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~-s~e~l~~RL~~R~~~~~~~i~~rl~ 144 (186)
T PRK10078 81 EIDLWLHAGF--DVLVNGS------RAHLPQARARYQSALLPVCLQV-SPEILRQRLENRGRENASEINARLA 144 (186)
T ss_pred HHHHHHhCCC--EEEEeCh------HHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3677888898 8888875 4444556666666677777776 67776666532 334444544443
No 71
>PRK12338 hypothetical protein; Provisional
Probab=98.28 E-value=8.1e-06 Score=85.37 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=78.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcccccccc---ccccCCccCCcchhhh------
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDV---SKSSGSLRSKKPVTKM------ 252 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~---sk~~g~~r~kk~l~kk------ 252 (535)
.+.+|+++|.|||||||+|+.|++++ | . ..+..+|+++....+....+. .....++- .+.+...
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l----~-~-~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a-~~~l~~~~~~~~~ 75 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL----N-I-KHLIETDFIREVVRGIIGKEYAPALHKSSYNA-YTALRDKENFKNN 75 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC----C-C-eEEccChHHHHHHcCCCCcccCchhhcccHHH-HhhcCCcccccch
Confidence 46899999999999999999999875 2 2 344556666655432110000 00000000 0000000
Q ss_pred --hhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhh-cCceEEEEEEecCCHH----HH
Q 009432 253 --VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKR-SGYEVYILEATYKDPA----GC 325 (535)
Q Consensus 253 --v~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~-~G~~V~vIe~~~~d~e----~c 325 (535)
..-..|... -+.++..+...+.++++.|. .|||+++.+.+..+.. .+. ....+.++.+. ++.+ .|
T Consensus 76 ~~~i~~gf~~q-~~~V~~~i~~vi~r~~~~g~--svIiEGvhl~P~~i~~----~~~~~~~~v~~~vl~-~dee~h~~Rf 147 (319)
T PRK12338 76 EELICAGFEEH-ASFVIPAIEKVIERAVTDSD--DIVIEGVHLVPGLIDI----EQFEENASIHFFILS-ADEEVHKERF 147 (319)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC--eEEEEeccccHHHHhh----hhhcccCceEEEEEE-CCHHHHHHHH
Confidence 000001000 11223333344566778898 9999999998765542 221 22345566665 4654 44
Q ss_pred HHhhcC-------CCCHHHHHHHhhccccCC
Q 009432 326 AARNVH-------GFTLDDIERMAGQWEEAP 349 (535)
Q Consensus 326 i~RNih-------~VpeEvIe~M~krfE~~p 349 (535)
..|-.. -...+.|+.|.+.+....
T Consensus 148 ~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~~A 178 (319)
T PRK12338 148 VKRAMEIKRGGKQLEYFRENRIIHDHLVEQA 178 (319)
T ss_pred HHhhhccCCchhhhhChHHHHHHHHHHHHhH
Confidence 444321 122456777766666543
No 72
>PRK14529 adenylate kinase; Provisional
Probab=98.27 E-value=6.7e-06 Score=81.96 Aligned_cols=119 Identities=15% Similarity=0.217 Sum_probs=69.2
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA 265 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~ 265 (535)
|+|.|+|||||||+|+.|++++ + ...++..++++.+...- ..+-+++.+|.-.... .
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~----~--~~~is~gdllr~~i~~~---------------t~lg~~i~~~i~~G~l--v 59 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY----D--LAHIESGAIFREHIGGG---------------TELGKKAKEYIDRGDL--V 59 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH----C--CCCcccchhhhhhccCC---------------ChHHHHHHHHHhccCc--c
Confidence 7889999999999999999875 2 23457888888754210 0111112222111000 0
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432 266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR 328 (535)
Q Consensus 266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R 328 (535)
--+.+...+.+.|......-+|+|+-=-+..+-..|.++..+.++.+ .+|.+.+ +.+++++|
T Consensus 60 pdei~~~lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~-~~~~l~~R 122 (223)
T PRK14529 60 PDDITIPMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILL-PREVAKNR 122 (223)
T ss_pred hHHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHH
Confidence 01122233344443211126899997777778777777777777655 5777776 55555555
No 73
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.26 E-value=2.6e-06 Score=79.91 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+|+|+|++|||||||++.|+..+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 379999999999999999998764
No 74
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.25 E-value=9.5e-06 Score=80.66 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=36.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+.+||-+.|.+||||||+|++|.+.+ ++..+.+++.|||+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~I~~D~YYk~~ 49 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVVISLDDYYKDQ 49 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceEeeccccccch
Confidence 45899999999999999999999886 33456788999998743
No 75
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.25 E-value=1.1e-05 Score=76.51 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=28.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
+..|+|+|++||||||+|+.|+..+ + ..+++.|..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l----~--~~~vd~D~~i~ 40 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL----N--MEFYDSDQEIE 40 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc----C--CcEEECCchHH
Confidence 4579999999999999999999864 2 24567776543
No 76
>PLN02674 adenylate kinase
Probab=98.24 E-value=5e-06 Score=83.90 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=70.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
...|+|.|.|||||||+|+.|++.+ + ...++.+|+++.+...- + ..+ +.+..-+.....-++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~----~--~~his~GdllR~~i~~~-----s-----~~g-~~i~~~~~~G~lvpd- 92 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRAAVAAK-----T-----PLG-IKAKEAMDKGELVSD- 92 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc----C--CcEEchhHHHHHHHhcc-----C-----hhh-HHHHHHHHcCCccCH-
Confidence 4568899999999999999999864 2 34569999998765310 0 001 111100001111111
Q ss_pred HHHHHHHHHHHHHHHHHc---CCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432 263 EEAYRSSMLKAFTRTLDE---GNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR 328 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~---G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R 328 (535)
+.+...+.+.|.. +. -+|+|+-=-+..+-..|..+....|..+ .+|++.+ +.+++++|
T Consensus 93 -----~iv~~lv~~~l~~~~~~~--g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v-~~~~l~~R 154 (244)
T PLN02674 93 -----DLVVGIIDEAMKKPSCQK--GFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAI-DDAILEER 154 (244)
T ss_pred -----HHHHHHHHHHHhCcCcCC--cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHH
Confidence 1122223334432 33 6899997667777777777777777665 5677776 55665555
No 77
>PRK13808 adenylate kinase; Provisional
Probab=98.24 E-value=7.6e-06 Score=86.02 Aligned_cols=119 Identities=22% Similarity=0.182 Sum_probs=66.2
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhh-hhccCchHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMV-MEYCYEPEMEE 264 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv-~ey~y~~e~ee 264 (535)
|||.|.|||||||+|+.|++.+ + ..+++.+|+++.++... + ..+ .. .+.+ ....+.++ +
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y----g--l~~is~gdlLR~~i~~~-----s-----~~g-~~-~~~~~~~G~lVPd--e 62 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY----G--IVQLSTGDMLRAAVAAG-----T-----PVG-LK-AKDIMASGGLVPD--E 62 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh----C--CceecccHHHHHHhhcC-----C-----hhh-HH-HHHHHHcCCCCCH--H
Confidence 7889999999999999999874 2 35668899988654210 0 000 00 0011 01111111 1
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR 328 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R 328 (535)
.+...+.+.+.. ..... -+|||+---+..+...|..+....++.+ ++|+|++ +.++|++|
T Consensus 63 iv~~li~e~l~~-~~~~~--G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDV-p~evll~R 123 (333)
T PRK13808 63 VVVGIISDRIEQ-PDAAN--GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRV-NEGALLAR 123 (333)
T ss_pred HHHHHHHHHHhc-ccccC--CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEEC-CHHHHHHH
Confidence 111111111211 11222 5799985545666666666666666655 6777877 67777766
No 78
>PRK13948 shikimate kinase; Provisional
Probab=98.23 E-value=5.5e-06 Score=79.95 Aligned_cols=41 Identities=24% Similarity=0.189 Sum_probs=31.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
..+..|+|+|++||||||+++.|++.+ + . .++..|.++...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l----g-~-~~iD~D~~ie~~ 48 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL----M-L-HFIDTDRYIERV 48 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc----C-C-CEEECCHHHHHH
Confidence 345789999999999999999999875 2 2 355888666543
No 79
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.23 E-value=1.4e-06 Score=81.51 Aligned_cols=71 Identities=11% Similarity=-0.053 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhhc
Q 009432 267 RSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAGQ 344 (535)
Q Consensus 267 ~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~kr 344 (535)
|......+..+++.|. +||+|.+.. ....+.+.++. +..|.+.+.+.+.+.+|-.. ..+.+.|++...+
T Consensus 77 y~~~~~~i~~~~~~g~--~vi~d~~~~------~~~~~~~~~~~-~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~ 147 (180)
T TIGR03263 77 YGTPKSPVEEALAAGK--DVLLEIDVQ------GARQVKKKFPD-AVSIFILPPSLEELERRLRKRGTDSEEVIERRLAK 147 (180)
T ss_pred eCCcHHHHHHHHHCCC--eEEEECCHH------HHHHHHHhCCC-cEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3444556788889999 999997522 22233444433 33344433466777766544 3456667665554
Q ss_pred cc
Q 009432 345 WE 346 (535)
Q Consensus 345 fE 346 (535)
..
T Consensus 148 ~~ 149 (180)
T TIGR03263 148 AK 149 (180)
T ss_pred HH
Confidence 43
No 80
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.22 E-value=8.9e-06 Score=81.18 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=32.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
+-|+|.|.|||||||+|+.|++.+ + ..+++.||+++...
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~----g--~~~is~gdllr~~~ 45 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE----N--LKHINMGNILREEI 45 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----C--CcEEECChHHHHHh
Confidence 348999999999999999999874 2 35779999998754
No 81
>PRK13947 shikimate kinase; Provisional
Probab=98.22 E-value=5.5e-06 Score=76.90 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=28.1
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
|+|+|+|||||||+|+.|++.+ | . .+++.|+++..
T Consensus 4 I~l~G~~GsGKst~a~~La~~l----g-~-~~id~d~~~~~ 38 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL----S-F-GFIDTDKEIEK 38 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh----C-C-CEEECchhhhh
Confidence 8999999999999999999876 2 2 35677776544
No 82
>PRK14530 adenylate kinase; Provisional
Probab=98.20 E-value=1.1e-05 Score=78.46 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=31.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
.|+|+|.|||||||+|+.|++.+ + ...++.+|+++...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~----~--~~~i~~g~~lr~~~ 42 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF----G--VEHVTTGDALRANK 42 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CeEEeccHHHHHhc
Confidence 58889999999999999999875 2 34568888888654
No 83
>PRK13949 shikimate kinase; Provisional
Probab=98.19 E-value=8.5e-06 Score=77.27 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=28.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
-|+|+|+|||||||+++.|++.+ + ...++.|+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l----~--~~~id~D~~i~~ 38 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL----G--LSFIDLDFFIEN 38 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc----C--CCeecccHHHHH
Confidence 38999999999999999999875 2 246688876643
No 84
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.18 E-value=4.8e-06 Score=80.82 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=31.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
||.|+|.|||||||||+.|++.+ + .+.+++.|||+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~---~--~~~~i~~Ddf~~~~ 38 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL---P--NCCVIHQDDFFKPE 38 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---C--CCeEEccccccCCc
Confidence 58899999999999999999874 1 25688999998754
No 85
>PRK03839 putative kinase; Provisional
Probab=98.18 E-value=3.7e-06 Score=79.22 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=29.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.|+|.|+|||||||+|++|++.+ + ..+++.|++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~----~--~~~id~d~~~~~ 37 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL----G--YEYVDLTEFALK 37 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CcEEehhhhhhh
Confidence 58999999999999999999875 2 246688887654
No 86
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.18 E-value=3e-06 Score=81.21 Aligned_cols=42 Identities=33% Similarity=0.441 Sum_probs=32.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCC---CcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGD---APRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~---~~rIlS~DDyfr~ 226 (535)
||.|+|.+||||||||+.|...+...+.. ...+++.|+|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~ 45 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDD 45 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccc
Confidence 68999999999999999999988544322 1456778877653
No 87
>PRK04040 adenylate kinase; Provisional
Probab=98.18 E-value=1.6e-05 Score=76.93 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=32.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+.+|+++|.|||||||+++.|++.+. ....+++.+|++...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~----~~~~~~~~g~~~~~~ 42 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK----EDYKIVNFGDVMLEV 42 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc----cCCeEEecchHHHHH
Confidence 46899999999999999999998752 124567888887654
No 88
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.17 E-value=1.2e-06 Score=84.99 Aligned_cols=158 Identities=19% Similarity=0.165 Sum_probs=83.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh----hccccccccccccCCccCCcchhh-----h
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE----VEKVEDSDVSKSSGSLRSKKPVTK-----M 252 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~----~e~v~~~~~sk~~g~~r~kk~l~k-----k 252 (535)
...||||.|++|+||||++++|.+.. + .-+|..---|.. .++++.. ....+++.+ +
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~----~---l~~SVS~TTR~pR~gEv~G~dY~--------Fvs~~EF~~~i~~~~ 67 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD----K---LRFSVSATTRKPRPGEVDGVDYF--------FVTEEEFEELIERDE 67 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc----C---eEEEEEeccCCCCCCCcCCceeE--------eCCHHHHHHHHhcCC
Confidence 56799999999999999999999763 1 111221111111 1111100 000011110 1
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-
Q 009432 253 VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH- 331 (535)
Q Consensus 253 v~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih- 331 (535)
.+||. +..+.+|......++..++.|+ .||+|-. .+-..++-+.+. .++.|.+.+++.+++.+|=..
T Consensus 68 fLE~a---~~~gnyYGT~~~~ve~~~~~G~--~vildId------~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~R 135 (191)
T COG0194 68 FLEWA---EYHGNYYGTSREPVEQALAEGK--DVILDID------VQGALQVKKKMP-NAVSIFILPPSLEELERRLKGR 135 (191)
T ss_pred cEEEE---EEcCCcccCcHHHHHHHHhcCC--eEEEEEe------hHHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHcc
Confidence 11221 1123467777777899999999 8888763 233334444444 667777766666766555322
Q ss_pred -CCCHHHHHHHhhccccCCccceeecCCCCc-cCCCcccc
Q 009432 332 -GFTLDDIERMAGQWEEAPTLYLQLDIKTLF-HGDDLKES 369 (535)
Q Consensus 332 -~VpeEvIe~M~krfE~~p~~y~~lD~~sll-~~ddl~e~ 369 (535)
.-++++|. +|++.+......++..+.+ .||||..|
T Consensus 136 gtds~e~I~---~Rl~~a~~Ei~~~~~fdyvivNdd~e~a 172 (191)
T COG0194 136 GTDSEEVIA---RRLENAKKEISHADEFDYVIVNDDLEKA 172 (191)
T ss_pred CCCCHHHHH---HHHHHHHHHHHHHHhCCEEEECccHHHH
Confidence 34455554 4444444344444445554 35555444
No 89
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.17 E-value=1.1e-05 Score=76.99 Aligned_cols=42 Identities=36% Similarity=0.554 Sum_probs=34.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+|.|+|.|||||||||+.|.+.+... |..+.+++.|||+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~-~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN-GIGPVVISLDDYYVPR 42 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEehhhcccCc
Confidence 58999999999999999999887543 4456788999999743
No 90
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.16 E-value=4.1e-06 Score=80.14 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....+|+|+|++||||||||+.|...+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 355689999999999999999998753
No 91
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.14 E-value=1.6e-06 Score=75.81 Aligned_cols=34 Identities=50% Similarity=0.674 Sum_probs=28.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
+|+|+|+|||||||+|+.|++.+ + ..+++.|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~----~--~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL----G--FPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH----T--CEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----C--CeEEEecceE
Confidence 68999999999999999999875 2 4677889853
No 92
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.14 E-value=6.6e-05 Score=71.17 Aligned_cols=28 Identities=36% Similarity=0.624 Sum_probs=24.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
.++|++.|++||||||+|+.|++.+...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999987543
No 93
>PLN02348 phosphoribulokinase
Probab=98.12 E-value=1.3e-05 Score=85.88 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcC--------------CCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENG--------------GDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g--------------G~~~rIlS~DDyfr 225 (535)
..++||.|+|.+||||||||+.|.+.+...+ +..+.+++.|||..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~ 105 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS 105 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence 4678999999999999999999999874321 13457889999975
No 94
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.12 E-value=8.3e-06 Score=75.18 Aligned_cols=38 Identities=34% Similarity=0.516 Sum_probs=30.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
++|+|+|.+||||||+|+.|++.+ | ..+++.|++++..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~l----g--~~~~~~~~~~~~~ 38 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL----S--LKLISAGDIFREL 38 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc----C--CceecHHHHHHHH
Confidence 479999999999999999999864 2 2466877776544
No 95
>PRK04182 cytidylate kinase; Provisional
Probab=98.08 E-value=5.8e-06 Score=76.69 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=28.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
++|+|+|.+||||||+|+.|++.+ | . .+++.|++++.
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~l----g-~-~~id~~~~~~~ 37 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKL----G-L-KHVSAGEIFRE 37 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc----C-C-cEecHHHHHHH
Confidence 379999999999999999999864 2 2 35566666554
No 96
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=1.7e-05 Score=75.81 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=87.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
+.+.||.|..||||||+-..+...+. + ...+++.|.+...... +.. ..+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~--~--~~~~VN~D~iA~~i~p----~~p-----------------------~~~ 50 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL--P--GIVFVNADEIAAQISP----DNP-----------------------TSA 50 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc--C--CeEEECHHHHhhhcCC----CCc-----------------------hHH
Confidence 56889999999999999776655432 2 3456677766554321 110 011
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc-------CCCCH
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV-------HGFTL 335 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi-------h~Vpe 335 (535)
.-..-+.+...+..+++.|. .++++.|....+ ..+++..|++.||-+...++.....+..++|-. |.+++
T Consensus 51 ~i~A~r~ai~~i~~~I~~~~--~F~~ETtLS~~s-~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpE 127 (187)
T COG4185 51 AIQAARVAIDRIARLIDLGR--PFIAETTLSGPS-ILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPE 127 (187)
T ss_pred HHHHHHHHHHHHHHHHHcCC--CcceEEeeccch-HHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcH
Confidence 11233455666778889998 899999887755 457888999999998777766656665555533 58999
Q ss_pred HHHHHHhhcc
Q 009432 336 DDIERMAGQW 345 (535)
Q Consensus 336 EvIe~M~krf 345 (535)
+.|++-+.+-
T Consensus 128 D~Ir~RY~rs 137 (187)
T COG4185 128 DKIRRRYRRS 137 (187)
T ss_pred HHHHHHHHHH
Confidence 9998877653
No 97
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.06 E-value=3.6e-05 Score=75.85 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=37.0
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEE-EeCCceeee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRI-HSMDDYFMT 226 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rI-lS~DDyfr~ 226 (535)
...+.+|.|.|.+|||||||++.|+..+...++.. .| ++.|++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~-~v~i~~D~~~~~ 76 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP-AIQVPMDGFHLD 76 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc-eEEEecccccCC
Confidence 35688999999999999999999998876655533 45 788987754
No 98
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.05 E-value=3.6e-05 Score=74.08 Aligned_cols=108 Identities=22% Similarity=0.225 Sum_probs=61.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
=|+|+|++||||||+.+.|++.|. ...+..|.++..... +.+ ..+|+..-++
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~------~~F~D~D~~Ie~~~g-----------------~sI-----~eIF~~~GE~ 55 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN------LPFIDTDQEIEKRTG-----------------MSI-----AEIFEEEGEE 55 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC------CCcccchHHHHHHHC-----------------cCH-----HHHHHHHhHH
Confidence 489999999999999999998761 235567765543321 111 1223333333
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeC--CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDD--RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV 330 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDa--TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi 330 (535)
..+..-.+.+.+.+..+. .||-=+ +....+-|. +.++.| .+|++.+ +.++..+|-.
T Consensus 56 ~FR~~E~~vl~~l~~~~~--~ViaTGGG~v~~~enr~----~l~~~g---~vv~L~~-~~e~l~~Rl~ 113 (172)
T COG0703 56 GFRRLETEVLKELLEEDN--AVIATGGGAVLSEENRN----LLKKRG---IVVYLDA-PFETLYERLQ 113 (172)
T ss_pred HHHHHHHHHHHHHhhcCC--eEEECCCccccCHHHHH----HHHhCC---eEEEEeC-CHHHHHHHhc
Confidence 334333344555555553 454443 444444444 555555 4666665 7777777654
No 99
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.05 E-value=1.3e-05 Score=79.12 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=33.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr~~ 227 (535)
||.|+|.+||||||||+.|+..+... .+..+.++++|+|+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~ 44 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPN 44 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcH
Confidence 57899999999999999999887431 23346788999997643
No 100
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.04 E-value=1.7e-05 Score=70.95 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=25.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+|+|+|.|||||||+|+.|++.+ + ..+++.|.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~----~--~~~~~~~~ 32 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL----G--LPYLDTGG 32 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----C--Cceecccc
Confidence 58999999999999999999874 2 23556663
No 101
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.03 E-value=4.5e-05 Score=72.99 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=76.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
||+=++.+||||||+|..|...+- .+.+| -.||+-.. .
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg----~wgHv-QnDnI~~k-~------------------------------------ 38 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFG----EWGHV-QNDNITGK-R------------------------------------ 38 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcC----CCCcc-ccCCCCCC-C------------------------------------
Confidence 466688999999999999998863 23333 44543211 0
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCc-------eEEEEEEecC---CH----HHHHHhhc
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGY-------EVYILEATYK---DP----AGCAARNV 330 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~-------~V~vIe~~~~---d~----e~ci~RNi 330 (535)
...+.+.+.+.|+.....+||+|-.|....+|++++...++..- .+.+|-+.+. +. +.|..|-.
T Consensus 39 --~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~ 116 (168)
T PF08303_consen 39 --KPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVL 116 (168)
T ss_pred --HHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00222334455633334599999999999999999998877544 5555555542 12 35665533
Q ss_pred -----C-----CC-C----HHHHHHHhhccccCCc
Q 009432 331 -----H-----GF-T----LDDIERMAGQWEEAPT 350 (535)
Q Consensus 331 -----h-----~V-p----eEvIe~M~krfE~~p~ 350 (535)
| .. . ..+++.+.++||+..+
T Consensus 117 ~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~~~ 151 (168)
T PF08303_consen 117 ARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPVDP 151 (168)
T ss_pred hcCcCcceeecCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 2 11 2 3467777889998654
No 102
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.03 E-value=5e-05 Score=73.56 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=34.7
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.+...+|.|+|.+||||||||+.|...+.. ....+++.|+|+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---~~~~~i~~D~~~~~ 46 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK---LEIVIISQDNYYKD 46 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc---cCCeEecccccccC
Confidence 456689999999999999999999987521 23567899988653
No 103
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.02 E-value=5.4e-06 Score=78.96 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhh
Q 009432 266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAG 343 (535)
Q Consensus 266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~k 343 (535)
+|......+...++.|+ .+|+|.. .....++ ++.....++|.+..++.+++.+|-.. ..+.+.|+++..
T Consensus 78 ~YGt~~~~i~~~~~~~~--~~ild~~---~~~~~~l----~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~ 148 (184)
T smart00072 78 YYGTSKETIRQVAEQGK--HCLLDID---PQGVKQL----RKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLA 148 (184)
T ss_pred CcccCHHHHHHHHHcCC--eEEEEEC---HHHHHHH----HHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44555566788888998 9999975 2222222 22344556777765567766666543 456677776655
Q ss_pred c
Q 009432 344 Q 344 (535)
Q Consensus 344 r 344 (535)
+
T Consensus 149 ~ 149 (184)
T smart00072 149 A 149 (184)
T ss_pred H
Confidence 4
No 104
>PRK13973 thymidylate kinase; Provisional
Probab=98.00 E-value=6.3e-05 Score=73.55 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
.++|++.|+.||||||.++.|++++...|
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g 31 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAG 31 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 47899999999999999999999986543
No 105
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.00 E-value=2.5e-05 Score=74.78 Aligned_cols=39 Identities=33% Similarity=0.545 Sum_probs=32.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
++|.+.|+|||||||+|+.|++.+ | ..++|.+++|+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~----g--l~~vsaG~iFR~~A 39 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL----G--LKLVSAGTIFREMA 39 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHh----C--CceeeccHHHHHHH
Confidence 478999999999999999999875 3 34679999999764
No 106
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.99 E-value=8.4e-06 Score=79.37 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+.+|||+|++|||||||++.|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35679999999999999999999753
No 107
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.97 E-value=2.4e-05 Score=81.03 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=28.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
....+|+|+|++||||||+++.|++.+ | . .++..|.++.
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L----g-~-~~id~D~~i~ 169 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL----G-V-PFVELNREIE 169 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc----C-C-CEEeHHHHHH
Confidence 355689999999999999999999875 2 2 2446665443
No 108
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.97 E-value=1.1e-05 Score=85.18 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=88.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
...+-|+++||+|+||||++-+|.++++.. |..+.-+.-|.|+.-... ..| |++
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~-gipcy~ldgdnirhgl~k---------nlg----------------fs~ 101 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSH-GIPCYSLDGDNIRHGLNK---------NLG----------------FSP 101 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhc-CCcccccCcchhhhhhhh---------ccC----------------CCc
Confidence 456889999999999999999999998765 566666666666653321 122 333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCC
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGF 333 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~V 333 (535)
+..+....++.+.++...+.|. +.|-.......++|..-.++-...+.+++-|.+.+ ++++|.+|..++.
T Consensus 102 edreenirriaevaklfadagl--vcitsfispf~~dr~~arkihe~~~l~f~ev~v~a-~l~vceqrd~k~l 171 (627)
T KOG4238|consen 102 EDREENIRRIAEVAKLFADAGL--VCITSFISPFAKDRENARKIHESAGLPFFEVFVDA-PLNVCEQRDVKGL 171 (627)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc--eeeehhcChhhhhhhhhhhhhcccCCceEEEEecC-chhhhhhcChHHH
Confidence 3333333455565666667786 66766666667888888888888888887777765 7899999987643
No 109
>PRK14526 adenylate kinase; Provisional
Probab=97.96 E-value=4.1e-05 Score=75.51 Aligned_cols=37 Identities=35% Similarity=0.486 Sum_probs=30.0
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
|+|.|.|||||||+|+.|++.+ + ...++.+++++...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~----~--~~~is~G~llr~~~ 39 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL----N--YYHISTGDLFRENI 39 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh----C--CceeecChHHHHhc
Confidence 7789999999999999999764 2 34568899988654
No 110
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.95 E-value=8.7e-05 Score=77.16 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=69.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcccccc--c----ccc-ccCCccCCcchh-hh
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDS--D----VSK-SSGSLRSKKPVT-KM 252 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~--~----~sk-~~g~~r~kk~l~-kk 252 (535)
..+++|+++|.+||||||+|+.|+.++ + ...|++.|.++......+... . .++ .|..-.....-. ..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l----~-~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~ 164 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL----G-IRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPV 164 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh----C-CCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhh
Confidence 367999999999999999999999886 2 235778776652221100000 0 000 000000000000 00
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432 253 VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA 327 (535)
Q Consensus 253 v~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~ 327 (535)
+.. |....+ .+...+...+.+++++|. .+||.+.+..+...+.+. .++. .+..+.|.+.+.+...+
T Consensus 165 l~g--~~~~~~-~v~~gi~~~I~~~~~~g~--s~IiEGvhl~P~~i~~~~---~~~~-~~i~~~l~i~~ee~h~~ 230 (301)
T PRK04220 165 IYG--FERHVE-PVSVGVEAVIERALKEGI--SVIIEGVHIVPGFIKEKY---LENP-NVFMFVLTLSDEEAHKA 230 (301)
T ss_pred hhh--HHHHHH-HHHHHHHHHHHHHHHhCC--cEEEecCCCCHHHHHHhh---hcCC-CEEEEEEEECCHHHHHH
Confidence 111 111111 122224455678889998 999999999988766533 2222 23344555456554433
No 111
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.94 E-value=4.8e-05 Score=70.88 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=28.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.|+|+|++||||||+|+.|++.+ | . .+++.|.++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l----g-~-~~~d~D~~~~~ 39 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL----G-Y-RFVDTDQWLQS 39 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh----C-C-CEEEccHHHHH
Confidence 47889999999999999999875 2 2 35677776544
No 112
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.94 E-value=7.3e-05 Score=77.21 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.9
Q ss_pred EEEEeCCCCC-HHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432 285 IVIVDDRNLR-VADFAQFWATAKRSGYEVYILEATYKDPAGCAAR 328 (535)
Q Consensus 285 ~VIVDaTN~~-~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R 328 (535)
.|++|.++.. .......+...++.|+.+.+|++.+ +.+++++|
T Consensus 59 av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a-~~e~L~~R 102 (288)
T PRK05416 59 AVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDA-SDEVLIRR 102 (288)
T ss_pred EEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHH
Confidence 7899998653 2234444555555688888888987 77777776
No 113
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.91 E-value=0.00014 Score=69.03 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+|++.|+.||||||+++.|.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999976
No 114
>PLN02459 probable adenylate kinase
Probab=97.90 E-value=8.2e-05 Score=75.94 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=32.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
.++.|||.|.|||||||+|+.|++.+ + ...++.+|+++.+.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~----~--~~~is~gdllR~ei 68 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLL----G--VPHIATGDLVREEI 68 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh----C--CcEEeCcHHHHHHH
Confidence 34568888999999999999999874 2 34668999998765
No 115
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.89 E-value=4.6e-05 Score=72.67 Aligned_cols=37 Identities=32% Similarity=0.206 Sum_probs=30.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+|.|+|-+||||||+|+.|.+. |+ ..+++.|++.+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~----~~--~~~i~~D~~~~~~ 37 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADK----YH--FPVIDADKIAHQV 37 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHh----cC--CeEEeCCHHHHHH
Confidence 4889999999999999999875 22 3578999987654
No 116
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.84 E-value=6.1e-06 Score=78.30 Aligned_cols=25 Identities=44% Similarity=0.440 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.+|||+|++|||||||++.|.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3489999999999999999998753
No 117
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.81 E-value=0.00012 Score=71.10 Aligned_cols=38 Identities=32% Similarity=0.261 Sum_probs=31.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.+|.|+|.+||||||+|+.|.+.+ | ..+++.|++.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~----g--~~~i~~D~~~~~~ 39 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK----G--IPILDADIYAREA 39 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----C--CeEeeCcHHHHHH
Confidence 479999999999999999999753 2 3577999987654
No 118
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.81 E-value=6.4e-05 Score=71.42 Aligned_cols=36 Identities=39% Similarity=0.451 Sum_probs=29.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+|.|+|.+||||||+|+.|.++ | ..+++.|++.+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~~-----g--~~~i~~D~~~~~~ 36 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKEL-----G--IPVIDADKIAHEV 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHC-----C--CCEEecCHHHHhh
Confidence 5899999999999999999862 3 3577999987754
No 119
>PLN02924 thymidylate kinase
Probab=97.80 E-value=0.00024 Score=70.47 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
....+|++.|+.||||||+|+.|++.+...|
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g 44 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLG 44 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3457999999999999999999999987653
No 120
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00017 Score=68.16 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=75.5
Q ss_pred ccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee-hhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHH
Q 009432 190 GLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT-EVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRS 268 (535)
Q Consensus 190 GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~-~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q 268 (535)
|..||||||++++|++++ | ...+.-||+--. +.++.. .| .++. +.+... .-+
T Consensus 2 GVsG~GKStvg~~lA~~l----g--~~fidGDdlHp~aNi~KM~-------~G-----iPL~--------DdDR~p-WL~ 54 (161)
T COG3265 2 GVSGSGKSTVGSALAERL----G--AKFIDGDDLHPPANIEKMS-------AG-----IPLN--------DDDRWP-WLE 54 (161)
T ss_pred CCCccCHHHHHHHHHHHc----C--CceecccccCCHHHHHHHh-------CC-----CCCC--------cchhhH-HHH
Confidence 889999999999999876 2 233455664321 111110 01 1111 111111 112
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh----hcCCCCHHHHHHHhhc
Q 009432 269 SMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR----NVHGFTLDDIERMAGQ 344 (535)
Q Consensus 269 ~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R----Nih~VpeEvIe~M~kr 344 (535)
.+...+....+.|. .+||-+.-+++.+|..++ ...=.+.||++.. +.++.++| .-|-.+...++.++.-
T Consensus 55 ~l~~~~~~~~~~~~--~~vi~CSALKr~YRD~LR----~~~~~~~Fv~L~g-~~~~i~~Rm~~R~gHFM~~~ll~SQfa~ 127 (161)
T COG3265 55 ALGDAAASLAQKNK--HVVIACSALKRSYRDLLR----EANPGLRFVYLDG-DFDLILERMKARKGHFMPASLLDSQFAT 127 (161)
T ss_pred HHHHHHHHhhcCCC--ceEEecHHHHHHHHHHHh----ccCCCeEEEEecC-CHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 33334444455676 688878878877776544 3333478888875 66665554 4568899999999999
Q ss_pred cccCC
Q 009432 345 WEEAP 349 (535)
Q Consensus 345 fE~~p 349 (535)
+|++-
T Consensus 128 LE~P~ 132 (161)
T COG3265 128 LEEPG 132 (161)
T ss_pred hcCCC
Confidence 98753
No 121
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.76 E-value=0.00013 Score=71.19 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=36.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
|.+|+|+|+.|+||||.+.+|+.++... +..+.+++.|.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga 44 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGA 44 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccH
Confidence 5689999999999999999999988877 6677888999887643
No 122
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00012 Score=71.23 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=80.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-hccCch
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-EYCYEP 260 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-ey~y~~ 260 (535)
.+.+|++.|-|||||-|.+.+|++++ + + ..+|.+|+.|.+... .|..++ .+.++.+ +....|
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky----~-f-tHlSaGdLLR~E~~~---------~gse~g--~~I~~~i~~G~iVP 69 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKY----G-F-THLSAGDLLRAEIAS---------AGSERG--ALIKEIIKNGDLVP 69 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHc----C-c-eeecHHHHHHHHHcc---------ccChHH--HHHHHHHHcCCcCc
Confidence 45688899999999999999999763 4 4 466999999987542 122222 1111111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH----hhcC-CCC
Q 009432 261 EMEEAYRSSMLKAFTRTLDE-GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA----RNVH-GFT 334 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~-G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~----RNih-~Vp 334 (535)
. +.+.+.++.+|.+ +.-..++||+---...+...|-...+. -.-+++.+.| ..++|++ |++. .+.
T Consensus 70 --~----ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~--~~~fvl~fdc-~ee~~l~Rll~R~q~~~R~ 140 (195)
T KOG3079|consen 70 --V----EITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQG--DPDFVLFFDC-PEETMLKRLLHRGQSNSRS 140 (195)
T ss_pred --H----HHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcC--CCCEEEEEeC-CHHHHHHHHHhhcccCCCC
Confidence 1 1233334444433 211148999955556666666655542 1224555565 5666665 4543 477
Q ss_pred HHHHHHHhhcccc
Q 009432 335 LDDIERMAGQWEE 347 (535)
Q Consensus 335 eEvIe~M~krfE~ 347 (535)
++.++.+.+|++-
T Consensus 141 DDn~esikkR~et 153 (195)
T KOG3079|consen 141 DDNEESIKKRLET 153 (195)
T ss_pred CCchHHHHHHHHH
Confidence 7777777777775
No 123
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.72 E-value=0.0002 Score=78.98 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=29.3
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
-|+|+|+|||||||+|+.|++.+ + ..+++.|+++..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~l----g--~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVL----D--LQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc----C--CeEEECcHHHHH
Confidence 48999999999999999999764 2 356788887654
No 124
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.70 E-value=0.00033 Score=78.05 Aligned_cols=113 Identities=14% Similarity=0.196 Sum_probs=62.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
...|+|+|+|||||||+++.|++.+ + . ..+..|+++...... .+ ..+|...-
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L----~-~-~fiD~D~~ie~~~g~-----------------si-----~eif~~~G 57 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMM----R-L-PFADADVEIEREIGM-----------------SI-----PSYFEEYG 57 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHh----C-C-CEEEchHHHHHHHCc-----------------CH-----HHHHHHHH
Confidence 3479999999999999999999986 2 2 366888876543210 00 01122122
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEE-EeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVI-VDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VI-VDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
+...++.-.+.+++.+.... .|| .-+ +-...+-|+.+.++.++.| .+|++.+ +++++.+|-
T Consensus 58 e~~FR~~E~~~l~~~~~~~~--~VIs~GGG~v~~~~n~~~L~~~~~~~g---~vv~L~~-~~~~l~~Rl 120 (542)
T PRK14021 58 EPAFREVEADVVADMLEDFD--GIFSLGGGAPMTPSTQHALASYIAHGG---RVVYLDA-DPKEAMERA 120 (542)
T ss_pred HHHHHHHHHHHHHHHHhcCC--eEEECCCchhCCHHHHHHHHHHHhcCC---EEEEEEC-CHHHHHHHH
Confidence 22223222223333343332 343 222 2334455555555666666 3566665 778887764
No 125
>PRK07429 phosphoribulokinase; Provisional
Probab=97.69 E-value=0.00037 Score=73.20 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=33.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
.++++|.|+|.+||||||||+.|+..+. .....+++.|||.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~---~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLG---EELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhc---cCceEEEEecccc
Confidence 4678999999999999999999998762 2234577889985
No 126
>PRK10867 signal recognition particle protein; Provisional
Probab=97.69 E-value=0.00033 Score=76.22 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=38.0
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
...+.+|+|+|++||||||+|..|+.++....|..+.+++.|.|+..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 34589999999999999999999998877663456678888876654
No 127
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.67 E-value=0.00011 Score=65.77 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=27.3
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+++++|.||+||||+++.++..+...++ .+.+++.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~-~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGG-KVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCC-EEEEEECCcc
Confidence 4789999999999999999887654333 3334444443
No 128
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.67 E-value=0.00035 Score=65.30 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=31.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
+++++|.|||||||+++.++..+.+.+ ..+.+++.|.++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g-~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG-KKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEEcCCCC
Confidence 789999999999999999998877663 345566777554
No 129
>PRK13975 thymidylate kinase; Provisional
Probab=97.63 E-value=0.00038 Score=66.02 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=22.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
++|++.|++||||||+|+.|++.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999886
No 130
>PLN02772 guanylate kinase
Probab=97.63 E-value=0.00013 Score=78.30 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHh
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMA 342 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~ 342 (535)
.+|..-.+.+...++.|+ .+|+|- +..-.+.+++.. +..++|.+...+.+++.+|-.. ..+++.|+++.
T Consensus 210 n~YGTsk~~V~~vl~~Gk--~vILdL---D~qGar~Lr~~~----l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL 280 (398)
T PLN02772 210 NLYGTSIEAVEVVTDSGK--RCILDI---DVQGARSVRASS----LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRL 280 (398)
T ss_pred ccccccHHHHHHHHHhCC--cEEEeC---CHHHHHHHHHhc----CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 456666777888899999 888874 333444443321 2333343332356776666443 44678887777
Q ss_pred hccc
Q 009432 343 GQWE 346 (535)
Q Consensus 343 krfE 346 (535)
++++
T Consensus 281 ~~A~ 284 (398)
T PLN02772 281 RNAE 284 (398)
T ss_pred HHHH
Confidence 7664
No 131
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.63 E-value=0.00035 Score=75.92 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=36.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..+.+|+|+|++||||||+|.+|+.++... |..+.+++.|-|+.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADTFRA 141 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcccch
Confidence 457899999999999999999999887655 45667788887764
No 132
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.00036 Score=75.53 Aligned_cols=113 Identities=20% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE 259 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~ 259 (535)
...+.+|+|+||-||||||.|-+|+.++.. .+..+-+++.|-|+-...+-+ +.+.+++.--.|.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL---------------~~La~q~~v~~f~ 160 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQL---------------KQLAEQVGVPFFG 160 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHH---------------HHHHHHcCCceec
Confidence 456899999999999999999999999987 456777888887765432200 0011111111122
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeC---CCCCHHHHHHHHHHHhhcC
Q 009432 260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDD---RNLRVADFAQFWATAKRSG 309 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDa---TN~~~~~R~~f~~LAr~~G 309 (535)
...+..-. .+.+.+.+.++...+.+||||. ......-..++.++.+...
T Consensus 161 ~~~~~~Pv-~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~ 212 (451)
T COG0541 161 SGTEKDPV-EIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVIN 212 (451)
T ss_pred CCCCCCHH-HHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcC
Confidence 11111011 1222233333444357999996 4555667777777666554
No 133
>PRK13974 thymidylate kinase; Provisional
Probab=97.62 E-value=0.0016 Score=63.72 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
..+|+|.|++||||||+++.|.+++..
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~ 29 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPS 29 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 469999999999999999999998753
No 134
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.61 E-value=0.00029 Score=67.99 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=30.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.+|.|+|.+||||||+++.|.++ | ..+++.|++.+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~~-----g--~~~i~~D~~~~~~ 39 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAEL-----G--APVIDADAIAHEV 39 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHHc-----C--CEEEEecHHHHHH
Confidence 57999999999999999999862 3 3678999887654
No 135
>PRK13976 thymidylate kinase; Provisional
Probab=97.61 E-value=0.0022 Score=63.13 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
++|++-|+-||||||+++.|++.+...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 479999999999999999999998654
No 136
>PRK05439 pantothenate kinase; Provisional
Probab=97.59 E-value=9.5e-05 Score=77.21 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=39.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceeeeh
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr~~ 227 (535)
...+.+|.|+|.|||||||+|+.|.+.+... .+..+.++++|+|+...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~ 131 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN 131 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH
Confidence 4578999999999999999999999876543 23457789999998654
No 137
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.58 E-value=0.00019 Score=62.63 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=20.4
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|+|.|.||+||||+|+.+++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 7899999999999999999874
No 138
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.58 E-value=0.0005 Score=74.73 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..+.+|+++|++||||||+|..|+.++....|..+.+++.|-|+.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 457899999999999999999999886533355677888887654
No 139
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0073 Score=68.47 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=27.0
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCcee
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYF 224 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyf 224 (535)
|+|+|.+|+|||+|++.|+.++... .+..+..++.+++.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~ 356 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT 356 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 7999999999999999999876532 12233344444443
No 140
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.54 E-value=4.4e-05 Score=69.92 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+|+|+|++|||||||++.|.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998753
No 141
>PLN02199 shikimate kinase
Probab=97.54 E-value=0.0003 Score=73.18 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=30.5
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
..|+|+|++||||||+++.|++.+ | ..++..|.++...
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~L----g--~~fIDtD~lIe~~ 140 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVL----G--YTFFDCDTLIEQA 140 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh----C--CCEEehHHHHHHH
Confidence 378999999999999999999875 2 2466888877654
No 142
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.52 E-value=0.00047 Score=67.38 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=32.0
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+..+++|.|+|-+||||||+++.|.+. | ..|++.|.+.+.
T Consensus 2 ~~~~~~igitG~igsGKSt~~~~l~~~-----g--~~v~d~D~i~~~ 41 (208)
T PRK14731 2 RSLPFLVGVTGGIGSGKSTVCRFLAEM-----G--CELFEADRVAKE 41 (208)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHC-----C--CeEEeccHHHHH
Confidence 345689999999999999999999863 2 467888876543
No 143
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.52 E-value=9.1e-05 Score=70.86 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=32.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+|.|+|.+||||||||+.|...+ ++..+.+++.|+|+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l---~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL---GNPKVVIISQDSYYKD 39 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCCCeEEEEecccccc
Confidence 58899999999999999999875 2334678899998754
No 144
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.51 E-value=0.0017 Score=63.83 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+|++-|.-||||||+++.|++.+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l 23 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 145
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.49 E-value=0.00055 Score=77.08 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=32.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..+++|.|+|.+||||||||+.|+..+ . ...+++.|+|..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p-~vgvIsmDdy~~ 102 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM----P-SIAVISMDNYND 102 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC----C-CcEEEEEcceec
Confidence 457899999999999999999999764 1 345789999853
No 146
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.48 E-value=0.0015 Score=64.30 Aligned_cols=38 Identities=39% Similarity=0.421 Sum_probs=32.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.++|.|+|-+||||||+|+.+.+. | ..|+++|++.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~-----G--~~vidaD~v~r~~ 39 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL-----G--FPVIDADDVAREV 39 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc-----C--CeEEEccHHHHHH
Confidence 468999999999999999999963 3 4588999998843
No 147
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00075 Score=66.77 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=36.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVE 229 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e 229 (535)
+-+||-|.|...|||||||+.|.+.+- .+.+++-||+|....+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~-----~~~lIhqDDFyKp~~E 45 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFP-----GCSLIHQDDFYKPENE 45 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHcc-----CCeeeccccccCchhh
Confidence 457899999999999999999999862 3568899999987654
No 148
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.00053 Score=74.77 Aligned_cols=44 Identities=30% Similarity=0.298 Sum_probs=36.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..+.+|+|+|++|+||||+|..|+.++.+. |..+.+++.|.|+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCCCH
Confidence 468899999999999999999999888765 44667778887654
No 149
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.46 E-value=0.00081 Score=66.29 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=32.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.+++|.|+|-+||||||+++.|.+.+ | ..+++.|.+.+..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~l----g--~~vidaD~i~~~l 44 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKL----N--LNVVCADTISREI 44 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHc----C--CeEEeccHHHHHH
Confidence 45789999999999999999998643 3 3477888886654
No 150
>PRK04296 thymidine kinase; Provisional
Probab=97.44 E-value=0.0013 Score=63.49 Aligned_cols=110 Identities=18% Similarity=0.080 Sum_probs=60.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC--CceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM--DDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~--DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
.+++++|.+||||||+|..++.++... +..+.++.. |.- .... .+. + ..|.. +..+.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~-~~~~-~i~----~-~lg~~---------~~~~~~~-- 63 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDR-YGEG-KVV----S-RIGLS---------REAIPVS-- 63 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEecccccc-ccCC-cEe----c-CCCCc---------ccceEeC--
Confidence 589999999999999998888776544 334444421 210 0000 000 0 00100 0000010
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEAT 318 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~ 318 (535)
....+++.+.. ..+.+.+||||-. ++..++..++.+.++..|+.|++.-..
T Consensus 64 ----~~~~~~~~~~~--~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 64 ----SDTDIFELIEE--EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred ----ChHHHHHHHHh--hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 01122222232 4555678999964 455666788888988899888777665
No 151
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.44 E-value=0.00068 Score=66.07 Aligned_cols=37 Identities=35% Similarity=0.305 Sum_probs=30.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.+|.|+|-+||||||+++.|... | ..+++.|++.+..
T Consensus 2 ~~igitG~igsGKst~~~~l~~~-----g--~~vid~D~i~~~~ 38 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSSE-----G--FLIVDADQVARDI 38 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----C--CeEEeCcHHHHHH
Confidence 47999999999999999999852 3 3688999876544
No 152
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.42 E-value=0.00052 Score=66.86 Aligned_cols=36 Identities=33% Similarity=0.334 Sum_probs=29.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+|.++|-+||||||+++.|.+. | ..+++.|++.+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-----g--~~~i~~D~i~~~~ 36 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL-----G--AFGISADRLAKRY 36 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC-----C--CEEEecchHHHHH
Confidence 5889999999999999988752 3 4677889886654
No 153
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0014 Score=71.32 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=32.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
.+.+|+++|++||||||+|.+|+..+....|..+.++..|.++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46789999999999999999998654222244555667776554
No 154
>PLN02842 nucleotide kinase
Probab=97.37 E-value=0.00065 Score=75.17 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=28.8
Q ss_pred EEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 187 ILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 187 IL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
+|.|.|||||||+|+.|++++ + ..+++.+|+++.+.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~l----g--~~hIs~gdLLR~ev 36 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKF----G--LVHISTGDLLRAEV 36 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHh----C--CCEEEccHHHHHHh
Confidence 579999999999999999875 2 34567888887653
No 155
>PRK14974 cell division protein FtsY; Provisional
Probab=97.34 E-value=0.0016 Score=68.80 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=31.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
.+.+|+|+|.+|+||||++.+|+..+...| ..+.++..|-|+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~~V~li~~Dt~R 180 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-FSVVIAAGDTFR 180 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcCc
Confidence 478999999999999999999988876654 344455555444
No 156
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.00017 Score=62.71 Aligned_cols=22 Identities=50% Similarity=0.697 Sum_probs=20.5
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|+|.|.|||||||+|+.|.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999874
No 157
>PRK06761 hypothetical protein; Provisional
Probab=97.31 E-value=0.0025 Score=65.90 Aligned_cols=26 Identities=54% Similarity=0.715 Sum_probs=23.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
..+|+|+|+|||||||+++.|.+.+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998864
No 158
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.30 E-value=0.0015 Score=63.31 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=29.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+...++++.|.|||||||||.+++......++ .+..++.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~-~v~yi~~e~ 57 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGK-KVAYIDTEG 57 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEECCC
Confidence 34569999999999999999999876654433 344445443
No 159
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.30 E-value=0.00096 Score=65.37 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=30.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
...+++|+|.||+|||+||.+++.......+..+..++.+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 45699999999999999999987666554244445556544
No 160
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.30 E-value=0.00039 Score=72.03 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcC-CCCcEEEeCCceeeeh
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENG-GDAPRIHSMDDYFMTE 227 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g-G~~~rIlS~DDyfr~~ 227 (535)
...+.+|.|+|.+||||||||+.|...+.... +..+.+++.|+|....
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~ 107 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN 107 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH
Confidence 45789999999999999999999987764321 2246788999987643
No 161
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.24 E-value=0.00071 Score=65.32 Aligned_cols=37 Identities=35% Similarity=0.410 Sum_probs=30.5
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
++|.|+|-.||||||+++.|.++ | ..+++.|.+.+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~~-----G--~~vidaD~i~~~l 37 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAEL-----G--FPVIDADEIAHEL 37 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-----T---EEEEHHHHHHHC
T ss_pred CEEEEECCCcCCHHHHHHHHHHC-----C--CCEECccHHHHHH
Confidence 58999999999999999999873 3 4688999886654
No 162
>PRK15453 phosphoribulokinase; Provisional
Probab=97.23 E-value=0.00045 Score=71.52 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=35.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
.++.+|.++|.|||||||+|+.|++.+... +..+.+++.|+|.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~-~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRE-NINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeEEEecccccc
Confidence 456799999999999999999999876432 33467889999886
No 163
>PLN02422 dephospho-CoA kinase
Probab=97.23 E-value=0.0014 Score=65.96 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=30.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
+|.|+|-+||||||+++.|.++ | ..+++.|++.+...
T Consensus 3 ~igltG~igsGKstv~~~l~~~-----g--~~~idaD~~~~~l~ 39 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKSS-----G--IPVVDADKVARDVL 39 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----C--CeEEehhHHHHHHH
Confidence 7999999999999999999853 3 46889999977653
No 164
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.23 E-value=0.0036 Score=62.18 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=28.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
...++++.|.||||||+||.+++...... |..+..++.++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee 59 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEE 59 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeC
Confidence 45699999999999999999876543333 44555555544
No 165
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.22 E-value=0.0027 Score=61.04 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=29.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+...++.++|.||||||+||.+++......+ ..+..++.+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g-~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQG-KKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEECCC
Confidence 4567999999999999999999887655543 3344445543
No 166
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.20 E-value=0.00028 Score=57.35 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+|+++|.|||||||+|+.|.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999875
No 167
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.19 E-value=0.0028 Score=65.59 Aligned_cols=76 Identities=22% Similarity=0.244 Sum_probs=47.8
Q ss_pred EEEEeCCCCC-HHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh-----hcC-----CCCHHHHHHHhhccccCC-ccc
Q 009432 285 IVIVDDRNLR-VADFAQFWATAKRSGYEVYILEATYKDPAGCAAR-----NVH-----GFTLDDIERMAGQWEEAP-TLY 352 (535)
Q Consensus 285 ~VIVDaTN~~-~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R-----Nih-----~VpeEvIe~M~krfE~~p-~~y 352 (535)
-|+||..... .....+.+.-.++.++.+.++++++ +.+++++| ..| +...|.|++=.+.+++.- .--
T Consensus 55 Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA-~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad 133 (284)
T PF03668_consen 55 AIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDA-SDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERAD 133 (284)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEEC-ChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Confidence 5788986543 2334444444455688888888887 55666664 445 233566777666666543 223
Q ss_pred eeecCCCCc
Q 009432 353 LQLDIKTLF 361 (535)
Q Consensus 353 ~~lD~~sll 361 (535)
..+|++.|.
T Consensus 134 ~vIDTs~l~ 142 (284)
T PF03668_consen 134 LVIDTSNLS 142 (284)
T ss_pred EEEECCCCC
Confidence 568888887
No 168
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.18 E-value=0.0031 Score=64.56 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=34.7
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
...+.+|+|+|++|+||||++.+|+..+.+.| ..+.++..|-|+.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~~D~~r~ 113 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAAGDTFRA 113 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEeCCCCCH
Confidence 34567888999999999999999998876654 4556677776544
No 169
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.12 E-value=0.0059 Score=61.76 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=29.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
+...+++++|.||+|||+||.+++.....+ |..+..++.+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEec
Confidence 456799999999999999999987654444 3344444543
No 170
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.012 Score=63.95 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=34.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..+.+|+|+|+.|+||||++..|+..+... |..+.+++.|-++.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~Ri 282 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRI 282 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcch
Confidence 345789999999999999999999887654 34556778887663
No 171
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.10 E-value=0.0012 Score=57.97 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=20.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...++++.|.+|+|||++++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 456899999999999999999988654
No 172
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.08 E-value=0.0036 Score=61.06 Aligned_cols=49 Identities=24% Similarity=0.183 Sum_probs=33.6
Q ss_pred hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
+|++|... -+...++++.|.||||||+||.+++......+ ..+..++.+
T Consensus 12 lD~~l~GG----i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~-~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGG----FERGTITQIYGPPGSGKTNICLQLAVEAAKNG-KKVIYIDTE 60 (225)
T ss_pred HHHHhcCC----CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEECC
Confidence 45666432 13566999999999999999999987665543 344444444
No 173
>PRK07933 thymidylate kinase; Validated
Probab=97.07 E-value=0.0044 Score=61.04 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=24.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
++|++.|+-||||||+++.|.+.+...|
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g 28 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARG 28 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 4799999999999999999999987653
No 174
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.0031 Score=63.31 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|.|-||+||||||..|+..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999875
No 175
>PLN02165 adenylate isopentenyltransferase
Probab=97.05 E-value=0.0064 Score=64.29 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=29.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
...+|+|+|++||||||||..|+..+ + ..|++.|.+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l---~---~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRF---P---SEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHc---C---CceecCChh
Confidence 34489999999999999999999864 2 257788876
No 176
>PF05729 NACHT: NACHT domain
Probab=97.05 E-value=0.011 Score=53.40 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
+++|.|.||+||||+++.++..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 78999999999999999999876554
No 177
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.0058 Score=60.55 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=26.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
..++|++=|+=||||||.++.|.+++.+.|
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g 31 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERG 31 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999987664
No 178
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.05 E-value=0.0088 Score=60.18 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=24.5
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.+...-+++.|.||+||||+|+.+++.+..
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 344456889999999999999999987644
No 179
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.0042 Score=67.52 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=34.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH-HcCCCCcEEEeCCceee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV-ENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~-e~gG~~~rIlS~DDyfr 225 (535)
..+|+++|++|+||||++.+|+.++. ..++..+.+++.|.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 45889999999999999999987765 44556677888888764
No 180
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.02 E-value=0.0058 Score=57.07 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=27.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+++|.|.||+|||+||.+++.....+| ..+..++.++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCC
Confidence 478999999999999999876655443 4555566543
No 181
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.01 E-value=0.0025 Score=66.52 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=29.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
.+.+|+++|++|||||+||..|++.+ + ..|+|.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~---~---~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRL---N---GEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhC---C---CcEEecccc
Confidence 35699999999999999999999864 2 357898884
No 182
>PF13173 AAA_14: AAA domain
Probab=97.00 E-value=0.0034 Score=56.33 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+++|.|+.|+||||+++++.+.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 183
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.99 E-value=0.0039 Score=65.56 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGG 212 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG 212 (535)
+...++.++|.|||||||||-+++......|+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~ 84 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGG 84 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 45569999999999999999987766555544
No 184
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.97 E-value=0.0079 Score=56.70 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...++++.|.||+|||||+-.++..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344899999999999999999877654
No 185
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.96 E-value=0.00088 Score=68.94 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=33.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
+|.++|.+||||||+|++|.+.+... +..+.+++.|+|++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~-g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE-GIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCceEEEecccccc
Confidence 58899999999999999999887543 34567889999987
No 186
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.95 E-value=0.01 Score=51.07 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...+++.|.||+||||+++.+...+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34789999999999999999998653
No 187
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.95 E-value=0.011 Score=58.14 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+...++++.|.|||||||||.+++.....+ |..+..++.++
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~ 63 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTEN 63 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCC
Confidence 456689999999999999999986544444 34555555544
No 188
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.95 E-value=0.0016 Score=60.73 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 192 PGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 192 PGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
|||||||+++.|++.+. ...+..|+++...
T Consensus 1 ~GsGKStvg~~lA~~L~------~~fiD~D~~i~~~ 30 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG------RPFIDLDDEIEER 30 (158)
T ss_dssp TTSSHHHHHHHHHHHHT------SEEEEHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhC------CCccccCHHHHHH
Confidence 79999999999999872 2566888876543
No 189
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=96.95 E-value=0.017 Score=54.64 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEccCCChHHHHHHHHHHHHHHcC
Q 009432 188 LRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 188 L~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
+=|+-||||||+++.|.+++.+.|
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~ 24 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKG 24 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcC
Confidence 359999999999999999987664
No 190
>CHL00181 cbbX CbbX; Provisional
Probab=96.93 E-value=0.014 Score=60.18 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=23.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..-|++.|.||+||||+|+.+++.+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4558999999999999999998876543
No 191
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0034 Score=59.83 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=28.3
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
=||++|-||+||||||.+|++.+ + ..-+++.|+....
T Consensus 9 NILvtGTPG~GKstl~~~lae~~----~--~~~i~isd~vkEn 45 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT----G--LEYIEISDLVKEN 45 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh----C--CceEehhhHHhhh
Confidence 37889999999999999999764 2 2344677776654
No 192
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.93 E-value=0.0092 Score=58.21 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|.||||||+||.+++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998743
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.91 E-value=0.02 Score=58.02 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
.=++++|.+|||||||.+.|...+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc
Confidence 3478899999999999999987653
No 194
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.91 E-value=0.007 Score=58.68 Aligned_cols=26 Identities=23% Similarity=0.094 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|.|.||||||+||.+++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 45699999999999999999987654
No 195
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.90 E-value=0.0047 Score=65.06 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=25.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGG 212 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG 212 (535)
+...++.++|.|||||||||-+++......|+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~ 84 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGG 84 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 34559999999999999999998766555544
No 196
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.89 E-value=0.0088 Score=61.43 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=23.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..-|++.|.||+||||+|+.+++.+...
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3458999999999999999998876544
No 197
>PRK06893 DNA replication initiation factor; Validated
Probab=96.88 E-value=0.011 Score=58.45 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.3
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
.++|+|.||+|||||++.++..+.+.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999998765543
No 198
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.018 Score=62.17 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..+.+|+|+|+.|+||||++..|+..+... +..+.+++.|.|+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCc
Confidence 346799999999999999999998877655 34567788888765
No 199
>PLN02796 D-glycerate 3-kinase
Probab=96.87 E-value=0.0013 Score=69.76 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=36.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
..+++|.|+|.+|||||||++.|...+... +....+++.||+....
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~-g~~~g~IsiDdfYLt~ 143 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNAT-GRRAASLSIDDFYLTA 143 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhccc-CCceeEEEECCcccch
Confidence 467999999999999999999999876432 3345677899988643
No 200
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.86 E-value=0.01 Score=62.16 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
..+.+|+|+|++||||||++..|+..+...+ ..+.++..|-++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEecCccc
Confidence 4578999999999999999999998887654 345566666444
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.015 Score=62.60 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=36.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHc---CCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN---GGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~---gG~~~rIlS~DDyfr~ 226 (535)
..+.+|+|+|..|+||||.+.+|+..+... .+..+.+++.|.|+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a 220 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG 220 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH
Confidence 456799999999999999999998876532 2456778888987654
No 202
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0071 Score=65.02 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc-c
Q 009432 179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY-C 257 (535)
Q Consensus 179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey-~ 257 (535)
...++.+|+++||-||||||.+-+++-++...| ..+-+++.|.|+....+-+. .+. .+. ++.-| .
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG-~K~~LvcaDTFRagAfDQLk------qnA-~k~------~iP~ygs 162 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKG-YKVALVCADTFRAGAFDQLK------QNA-TKA------RVPFYGS 162 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcC-CceeEEeecccccchHHHHH------HHh-Hhh------CCeeEec
Confidence 356889999999999999999999999887665 45567787766543322110 000 000 01111 1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCC---HHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432 258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLR---VADFAQFWATAKRSGYEVYILEATYKDPAGCAA 327 (535)
Q Consensus 258 y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~---~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~ 327 (535)
|.... ......+.+.+ .+..+|.+||||..--. .+-+.+.+++++..+=.-+++.++.+--+.|..
T Consensus 163 yte~d---pv~ia~egv~~-fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 163 YTEAD---PVKIASEGVDR-FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred ccccc---hHHHHHHHHHH-HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 22111 11111222333 33344789999974332 355677777777766444555565432245544
No 203
>PHA03132 thymidine kinase; Provisional
Probab=96.82 E-value=0.12 Score=58.53 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..++|+|-|.-||||||+++.|++.+
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999999875
No 204
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.81 E-value=0.0073 Score=60.41 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=27.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
..++++.|.||+|||||+.+++..+....|..+..++.+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 348999999999999999998776544323344455544
No 205
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.80 E-value=0.0016 Score=70.91 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..++||.|.|.+|||||||++.|...+... +....+++.|||...
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~-g~~vgvISiDDfYLt 254 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVT-GRKSATLSIDDFYLT 254 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhccc-CCceEEEEECCccCC
Confidence 367999999999999999999998765332 334567899999864
No 206
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.79 E-value=0.013 Score=58.44 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=22.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
.++|+|.+|+|||||++.++..+...
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 68999999999999999998776543
No 207
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0052 Score=59.59 Aligned_cols=22 Identities=41% Similarity=0.835 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e 205 (535)
++|+++|-||.||||+|++|++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHHH
Confidence 4799999999999999999994
No 208
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.78 E-value=0.0099 Score=60.25 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=31.0
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
++|.|+|-.||||||+++.|.+.+ | ..|++.|.+.+..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~----G--~~viDaD~iar~l 39 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH----H--IEVIDADLVVREL 39 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc----C--CeEEehHHHHHHH
Confidence 479999999999999999999642 2 4678999886654
No 209
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.78 E-value=0.012 Score=64.58 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=13.3
Q ss_pred EEEEcc-CCChHHHHHHHHHH
Q 009432 186 IILRGL-PGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GL-PGSGKSTLAr~L~e 205 (535)
+=..++ .|.|..-|...|+.
T Consensus 484 ve~t~~~~~dgR~~LmaqIRq 504 (569)
T KOG3671|consen 484 VETTALSSGDGRDALMAQIRQ 504 (569)
T ss_pred eeeccCcCcccHHHHHHHHHh
Confidence 334444 47788888888873
No 210
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.78 E-value=0.025 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
+|+++|.+||||||+++.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 799999999999999999887754
No 211
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.012 Score=65.03 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=42.5
Q ss_pred HcCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhc----CCCCHHHHHHHhhccc
Q 009432 279 DEGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNV----HGFTLDDIERMAGQWE 346 (535)
Q Consensus 279 k~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNi----h~VpeEvIe~M~krfE 346 (535)
..|.+.++|||-. .........+++...+....++||.++. .. .+.+.|-. +.++.+.|..+.++..
T Consensus 118 ~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt-e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 118 MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT-EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC-ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 3455679999964 4456677777777777666777776653 32 33444533 3777777776665543
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.75 E-value=0.00095 Score=56.70 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..++|+|.|||||||+++.|+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999998765
No 213
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.73 E-value=0.007 Score=59.08 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=25.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEe
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHS 219 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS 219 (535)
...++++.|.||||||+||.+++.....+.|..+..++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 44599999999999999999976544444133443334
No 214
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.011 Score=68.43 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=38.4
Q ss_pred cCCceEEEEeCCC-CCHHHHHHHHHHHhhcCceEEEEEEecCCHH--------HHHHhhcCCCCHHHHHHHhhcc
Q 009432 280 EGNFTIVIVDDRN-LRVADFAQFWATAKRSGYEVYILEATYKDPA--------GCAARNVHGFTLDDIERMAGQW 345 (535)
Q Consensus 280 ~G~f~~VIVDaTN-~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e--------~ci~RNih~VpeEvIe~M~krf 345 (535)
.|++.++|||... ++......+++..++..-.++||.++. +.. .|..=+.+.++.+.|.....+.
T Consensus 117 ~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt-d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~I 190 (830)
T PRK07003 117 DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERI 190 (830)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC-ChhhccchhhhheEEEecCCcCHHHHHHHHHHH
Confidence 4556799999744 445566777777777665666666553 332 2333233467766666555443
No 215
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.72 E-value=0.0022 Score=65.71 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=36.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr 225 (535)
..+.+|+|+|+.|+||||++..|+.++... |+..+.+++.|.|+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 456799999999999999999999887655 445677888887764
No 216
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.015 Score=66.39 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=42.3
Q ss_pred HcCCceEEEEeCCC-CCHHHHHHHHHHHhhcCceEEEEEEecCCHH--------HHHHhhcCCCCHHHHHHHhhcc
Q 009432 279 DEGNFTIVIVDDRN-LRVADFAQFWATAKRSGYEVYILEATYKDPA--------GCAARNVHGFTLDDIERMAGQW 345 (535)
Q Consensus 279 k~G~f~~VIVDaTN-~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e--------~ci~RNih~VpeEvIe~M~krf 345 (535)
..|++.++|||-.. .+......+++...+..-.++||.++. ++. .|..-....++.+.|.....+.
T Consensus 121 ~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt-ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~I 195 (700)
T PRK12323 121 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAI 195 (700)
T ss_pred hcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC-ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 35667899999643 445666777777777666677777764 332 3544444577777777665544
No 217
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.70 E-value=0.0043 Score=66.68 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=30.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
..+.+++|.|+||+|||.+|++|+..+ |..+.+++..+++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el----g~~~i~vsa~eL~ 185 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM----GIEPIVMSAGELE 185 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc----CCCeEEEEHHHhh
Confidence 567899999999999999999999764 3444454544433
No 218
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.70 E-value=0.0067 Score=57.93 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+|++.|.|||||||+|..++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999999865
No 219
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.68 E-value=0.0053 Score=67.26 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=25.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
...+++|.|-||+|||||+.+++..+...+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g 122 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ 122 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 455999999999999999999987665554
No 220
>PRK04328 hypothetical protein; Provisional
Probab=96.67 E-value=0.021 Score=57.50 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=32.6
Q ss_pred hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
.|++|..- -+...++++.|.||||||+||.+++.....+ |..+..++.+
T Consensus 12 LD~lL~GG----ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~e 60 (249)
T PRK04328 12 MDEILYGG----IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALE 60 (249)
T ss_pred HHHHhcCC----CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEee
Confidence 45665432 1345599999999999999999876554444 4455555543
No 221
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.01 Score=60.85 Aligned_cols=41 Identities=29% Similarity=0.266 Sum_probs=33.0
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
+..+++|++-|.||.||||+|..|+.++ |. ..+++.|-++.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rL----gI-~~visTD~IRE 126 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRL----GI-RSVISTDSIRE 126 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHc----CC-ceeecchHHHH
Confidence 4678999999999999999999999875 43 35667775543
No 222
>PRK12377 putative replication protein; Provisional
Probab=96.66 E-value=0.0058 Score=61.96 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=28.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
.-++|.|.||+||||||.+|+..+... |..+..++..+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~~ 139 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVPD 139 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHHH
Confidence 478999999999999999999887655 33444434333
No 223
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.66 E-value=0.016 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
+++|.|.||+||||+.+.+.+.+...
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 78889999999999999998877654
No 224
>PLN02840 tRNA dimethylallyltransferase
Probab=96.65 E-value=0.0074 Score=65.65 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=33.9
Q ss_pred cCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 173 KQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 173 ~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
..++...+.+..+|+|+|++||||||||..|++.+ + ..|++.|.+
T Consensus 11 ~~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~---~---~~iis~Ds~ 55 (421)
T PLN02840 11 SGSGASKTKKEKVIVISGPTGAGKSRLALELAKRL---N---GEIISADSV 55 (421)
T ss_pred CCCccccccCCeEEEEECCCCCCHHHHHHHHHHHC---C---CCeEecccc
Confidence 34444445667799999999999999999999875 2 246788764
No 225
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.64 E-value=0.015 Score=59.67 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=45.0
Q ss_pred EEEEeCCCCC-HHHHHHHHHHHhhc-CceEEEEEEecCCHHHHHH-----hhcCCC-----CHHHHHHHhhccccCCccc
Q 009432 285 IVIVDDRNLR-VADFAQFWATAKRS-GYEVYILEATYKDPAGCAA-----RNVHGF-----TLDDIERMAGQWEEAPTLY 352 (535)
Q Consensus 285 ~VIVDaTN~~-~~~R~~f~~LAr~~-G~~V~vIe~~~~d~e~ci~-----RNih~V-----peEvIe~M~krfE~~p~~y 352 (535)
-|+||-.+.. .....+++...+.. ++.+.++.+.+ +.+++++ |..|.. -.+.|..-.+-+.+.-...
T Consensus 55 Av~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA-~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A 133 (286)
T COG1660 55 AVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEA-DDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIA 133 (286)
T ss_pred EEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEEC-chhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHh
Confidence 5788875543 45566667777777 45566666665 5566665 444533 3445554444444433333
Q ss_pred -eeecCCCCc
Q 009432 353 -LQLDIKTLF 361 (535)
Q Consensus 353 -~~lD~~sll 361 (535)
..+|.+.|.
T Consensus 134 ~~vIDTs~ls 143 (286)
T COG1660 134 DLVIDTSELS 143 (286)
T ss_pred hhEeecccCC
Confidence 678888886
No 226
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.021 Score=65.47 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=23.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+|++|.+|+||||+|+.|++.+
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 227
>PRK05973 replicative DNA helicase; Provisional
Probab=96.62 E-value=0.0078 Score=60.78 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=29.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...+++|.|.||+|||+||-+++.....+ |..+.+++.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEe
Confidence 34499999999999999999987765555 4445555544
No 228
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.61 E-value=0.0051 Score=65.86 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..+++|.|.||+|||||+.+++..+...
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~ 109 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR 109 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4599999999999999999998766544
No 229
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.60 E-value=0.024 Score=55.32 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=28.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
...++++.|.||+|||+||.+++.....+ |..+..++.++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 35689999999999999999987655444 33444555543
No 230
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.56 E-value=0.0023 Score=65.51 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=30.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
+|.|+|.+|||||||++.|+..+.. ....+++.|||..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~---~~~~vi~~Dd~~~ 38 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS---DLVTVICLDDYHS 38 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC---CceEEEECccccc
Confidence 5789999999999999999987532 2345788898864
No 231
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.018 Score=67.78 Aligned_cols=67 Identities=24% Similarity=0.351 Sum_probs=43.3
Q ss_pred HcCCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhc----CCCCHHHHHHHhhccc
Q 009432 279 DEGNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNV----HGFTLDDIERMAGQWE 346 (535)
Q Consensus 279 k~G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNi----h~VpeEvIe~M~krfE 346 (535)
..|++.++|||- -.........+++...+..-.++||.++. +. .+.+-|-. +.++.+.|..+..+..
T Consensus 116 ~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT-e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 116 SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT-DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC-CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 346677999995 44556777888888888766677777643 32 23333433 4788887776665443
No 232
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.008 Score=63.53 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=22.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.||+|.|+||.|||+|+|+|++++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhh
Confidence 589999999999999999999875
No 233
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.017 Score=64.18 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=41.9
Q ss_pred HHcCCceEEEEeCCCC-CHHHHHHHHHHHhhcCceEEEEEEecCCHH--------HHHHhhcCCCCHHHHHHHhhcc
Q 009432 278 LDEGNFTIVIVDDRNL-RVADFAQFWATAKRSGYEVYILEATYKDPA--------GCAARNVHGFTLDDIERMAGQW 345 (535)
Q Consensus 278 Lk~G~f~~VIVDaTN~-~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e--------~ci~RNih~VpeEvIe~M~krf 345 (535)
-..|++.++|||.... +......+.+..++.--.+.||.++. ++. .|..-+...++.+.|.....++
T Consensus 115 p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt-d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~i 190 (509)
T PRK14958 115 PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT-DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHL 190 (509)
T ss_pred cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC-ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHH
Confidence 3456678999997543 45667777777777655566666653 432 3433344477777776655444
No 234
>COG4240 Predicted kinase [General function prediction only]
Probab=96.54 E-value=0.0029 Score=64.03 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=42.5
Q ss_pred CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhc
Q 009432 179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVE 229 (535)
Q Consensus 179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e 229 (535)
-+..++++-++|+-||||||+|-.|...+...|+..+.-+|.||++.+..+
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthad 96 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHAD 96 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHH
Confidence 345699999999999999999999988888877655667799999887643
No 235
>PRK09354 recA recombinase A; Provisional
Probab=96.54 E-value=0.013 Score=62.33 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=25.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGG 212 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG 212 (535)
+...++.++|.+||||||||-+++......|+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~ 89 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGG 89 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 45569999999999999999987765554544
No 236
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.0081 Score=64.48 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=34.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr 225 (535)
....+|+|+|++|+||||++.+|+..+... |...+.++..|.|+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ 180 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI 180 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 456789999999999999999998765433 333556777787754
No 237
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.47 E-value=0.021 Score=55.13 Aligned_cols=136 Identities=20% Similarity=0.167 Sum_probs=72.8
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc-ccccc-cccccCCccCCcchhhhhhhcc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK-VEDSD-VSKSSGSLRSKKPVTKMVMEYC 257 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~-v~~~~-~sk~~g~~r~kk~l~kkv~ey~ 257 (535)
.++..||||-|-+-||||++|.+|.+...+ .+- .+-+|-|+...... ..... ++...+ . ..+. +.+....
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~---pwm-higiD~f~e~lpp~~~d~a~g~~~~~~-v--~~dg-~~~v~v~ 91 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAE---PWM-HIGIDLFWEALPPEQLDLARGYTWDSA-V--EADG-LEWVTVH 91 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhc---chh-hhhHHHHHHhCCHHhhccccccccccc-c--ccCC-ceeeEee
Confidence 345559999999999999999999987532 222 22455444322110 00000 000000 0 0000 0011111
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 258 y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
|.+ ..+.+...+...+...+..|. .||.|+.-..+.....-..+ -.|+.|.+|=+.| +.|+..+|.
T Consensus 92 ~gp-i~e~~~~~~r~ai~a~ad~G~--~~i~Ddv~~~r~~L~Dc~r~--l~g~~v~~VGV~~-p~E~~~~Re 157 (205)
T COG3896 92 PGP-ILELAMHSRRRAIRAYADNGM--NVIADDVIWTREWLVDCLRV--LEGCRVWMVGVHV-PDEEGARRE 157 (205)
T ss_pred chh-HHHHHHHHHHHHHHHHhccCc--ceeehhcccchhhHHHHHHH--HhCCceEEEEeec-cHHHHHHHH
Confidence 222 222233344445666778898 99999988775554433333 3478898888887 556655543
No 238
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.47 E-value=0.013 Score=58.18 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-+++|+|.+||||||+++.+...+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 4478999999999999999998764
No 239
>PRK08116 hypothetical protein; Validated
Probab=96.45 E-value=0.015 Score=59.34 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=28.3
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
.-++|.|.+|+|||+||..|+..+.+. +..+..++..+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~~~ 152 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNFPQ 152 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHH
Confidence 468999999999999999999988765 33333334333
No 240
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.45 E-value=0.0028 Score=70.46 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=33.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.+.+|.+.|++||||||+|+.|++++ | ..+++.|+|++..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l----~--~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL----G--LLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc----C--CeEecCCceehHH
Confidence 55799999999999999999999876 2 3577889998864
No 241
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.44 E-value=0.0025 Score=67.95 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.3
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...+.+++|+|+|||||||||+.|+..+.
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999998763
No 242
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.42 E-value=0.0089 Score=64.33 Aligned_cols=37 Identities=32% Similarity=0.337 Sum_probs=30.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+.|.|+|-.||||||+|+.|+++ | ..+++.|.+.+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~~-----G--~~vidaD~i~~~l 38 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAEL-----G--AVVVDADVLAREV 38 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----C--CeEEehHHHHHHH
Confidence 36899999999999999999863 2 4578999887653
No 243
>PRK05642 DNA replication initiation factor; Validated
Probab=96.41 E-value=0.018 Score=57.39 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=27.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
-.++|+|.+|+|||||++.++..+... +..+..++.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHHHH
Confidence 357899999999999999998765544 334444454443
No 244
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.40 E-value=0.019 Score=57.42 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=61.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
..|+||.|.||+|||+||..++..+...++..+..+|.+.-......++-- . ..+ ..+ .++. ...+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la-~---~s~-----v~~-~~i~----~g~l 84 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLA-R---LSG-----VPY-NKIR----SGDL 84 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHH-H---HHT-----STH-HHHH----CCGC
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH-H---hhc-----chh-hhhh----cccc
Confidence 459999999999999999999887766544455555554222111111000 0 000 000 0000 1111
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEAT 318 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~ 318 (535)
....++.+.+ +...|.... ++|.|....+.......+...+..+..+.+|.++
T Consensus 85 ~~~e~~~~~~-~~~~l~~~~--l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID 137 (259)
T PF03796_consen 85 SDEEFERLQA-AAEKLSDLP--LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID 137 (259)
T ss_dssp HHHHHHHHHH-HHHHHHTSE--EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred CHHHHHHHHH-HHHHHhhCc--EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence 2223344433 344566654 8888888888888887776554432444444443
No 245
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.40 E-value=0.003 Score=62.56 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=30.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+++|.|.|.+||||||+|+.|++++ + ..+++.+++++.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~----~--~~~~~~g~~~r~ 39 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKL----G--YAYLDSGAMYRA 39 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh----C--CceeeCchHHHH
Confidence 4689999999999999999999875 2 245577777653
No 246
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.044 Score=60.97 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
-+.+++++|.||+||||+|+.|++.+.
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346789999999999999999998763
No 247
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.39 E-value=0.052 Score=55.83 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=32.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
....|+|+|.+|+||||+++.|...+... +....+++.|.++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 44689999999999999999998776543 3345567888665
No 248
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.38 E-value=0.051 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...|+|.|.+|||||||++.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999874
No 249
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0073 Score=58.50 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=31.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.++++++|.||+||||+.+...+.++ ...+++++|+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~-----~~~ivNyG~~Mle~ 43 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELV-----KHKIVNYGDLMLEI 43 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHh-----hceeeeHhHHHHHH
Confidence 57999999999999999999887653 23577888876543
No 250
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.30 E-value=0.0053 Score=56.86 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGG 212 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG 212 (535)
+|.+||..+||||||++.|..++.+.|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~ 29 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGY 29 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCC
Confidence 6899999999999999999999877653
No 251
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.29 E-value=0.034 Score=61.33 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=27.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM 220 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~ 220 (535)
...+++++|.|||||||||.+++..-..++|..+..++.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345999999999999999999865433333444444444
No 252
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.27 E-value=0.0063 Score=64.27 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=33.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
..+.+|.|+|.||||||||+..|...+.+. |..+.|+..|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~~Dp 94 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLAVDP 94 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 467899999999999999999998887765 44566777775
No 253
>PRK08181 transposase; Validated
Probab=96.26 E-value=0.011 Score=60.65 Aligned_cols=27 Identities=41% Similarity=0.615 Sum_probs=23.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
-|+|+|.||+|||+||..|...+.+.|
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 589999999999999999988766553
No 254
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.26 E-value=0.021 Score=62.87 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=29.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
...++++.|.||+|||||+.+++.....+| ..+..++.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g-e~~~y~s~eE 301 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK-ERAILFAYEE 301 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeeC
Confidence 455999999999999999999887665554 3444555443
No 255
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.26 E-value=0.043 Score=59.09 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
-++|.|.||+||||+|+.|+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999998753
No 256
>PRK06921 hypothetical protein; Provisional
Probab=96.25 E-value=0.015 Score=59.43 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=23.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..-++|.|.+|+|||+||..|+..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 3468999999999999999998876544
No 257
>PRK08006 replicative DNA helicase; Provisional
Probab=96.24 E-value=0.038 Score=61.00 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=61.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...||||.|-||.|||+||-.|+.......|..+.+||...=......++--. . .+.. ...+ ....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~-~---~~v~--~~~i--------~~~~ 288 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLAS-L---SRVD--QTRI--------RTGQ 288 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHH-h---cCCC--HHHh--------hcCC
Confidence 45699999999999999999987664322233444555442211111110000 0 0000 0000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHH-HHHhhc-CceEEEEE
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFW-ATAKRS-GYEVYILE 316 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~-~LAr~~-G~~V~vIe 316 (535)
+....|..+..++...+.... +.|.|....+..+..... .+.+++ ++.+++|+
T Consensus 289 l~~~e~~~~~~a~~~~~~~~~--l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 343 (471)
T PRK08006 289 LDDEDWARISGTMGILLEKRN--MYIDDSSGLTPTEVRSRARRIFREHGGLSLIMID 343 (471)
T ss_pred CCHHHHHHHHHHHHHHHhcCC--EEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 222345555555555555554 788888778876665555 344455 46555543
No 258
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.24 E-value=0.041 Score=59.33 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...++||.|.||+|||+||..++.......|..+.++|.+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE 233 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE 233 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 4569999999999999999998766543334444455554
No 259
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.24 E-value=0.019 Score=62.02 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.+.-|+|.|.||+|||++|+.++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4557888999999999999999865
No 260
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.23 E-value=0.01 Score=64.86 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=24.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
..++++.|.||+|||||+.+++......+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g 108 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAG 108 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45999999999999999999987654433
No 261
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.23 E-value=0.0038 Score=56.06 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.7
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|||.|.||+|||+||+.|++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 262
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.083 Score=59.88 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=41.3
Q ss_pred CCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhcC----CCCHHHHHHHhhcc
Q 009432 281 GNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNVH----GFTLDDIERMAGQW 345 (535)
Q Consensus 281 G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNih----~VpeEvIe~M~krf 345 (535)
+.+.+||||.. ..+......+++...+..-.++||.++. .+ .+...|-.+ .++.+.|..+..++
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt-e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT-EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARI 189 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC-ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHH
Confidence 44569999964 4556777778888887766777777663 33 234445433 67777776665543
No 263
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.22 E-value=0.022 Score=57.18 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
+...++++.|.||||||+||.+++......
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ 50 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE 50 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 344599999999999999999987765554
No 264
>PRK13695 putative NTPase; Provisional
Probab=96.21 E-value=0.046 Score=51.42 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.|+|+|.+|||||||++.|...+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999998876654
No 265
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.21 E-value=0.021 Score=62.51 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+.-|+|+|.||+|||++|+.++..+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568889999999999999999753
No 266
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.20 E-value=0.0041 Score=61.78 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=31.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+.+|.+.|.+||||||+|+.|++.+ | ...++.+++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~----~--~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL----G--FHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh----C--CCcccCchhHHH
Confidence 5799999999999999999999875 2 245688888765
No 267
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.18 E-value=0.0095 Score=59.44 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
....+|+|+|.+|+||||||+++...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45679999999999999999998865
No 268
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.17 E-value=0.016 Score=59.00 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=28.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...+++|+|||||||++.-..+.+... |+...|++.|
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~-gr~~~vVNLD 39 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAI-GRPVAVVNLD 39 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHh-CCceEEEecC
Confidence 356889999999999998888777665 4555677765
No 269
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.03 Score=64.09 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=40.9
Q ss_pred HcCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhh----cCCCCHHHHHHHhhc
Q 009432 279 DEGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARN----VHGFTLDDIERMAGQ 344 (535)
Q Consensus 279 k~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RN----ih~VpeEvIe~M~kr 344 (535)
..|.+.++|||.. ..+......+++...+..-.++||.++. +. .+.+-|- .+.++.+.|..+..+
T Consensus 116 ~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt-~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT-DPQKLPVTILSRCLQFHLKALDVEQIRQQLEH 189 (647)
T ss_pred hcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC-CccccchHHHhhheEeeCCCCCHHHHHHHHHH
Confidence 3566779999964 4456777888888888766676776653 32 2333343 336777666655543
No 270
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.15 E-value=0.032 Score=60.63 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
-++|+|.+|+|||+|++.+...+.+.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 47889999999999999999887654
No 271
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.14 E-value=0.0094 Score=61.84 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=27.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+|+++|++|||||+||..|++.+ + ..|+|.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~---~---~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL---N---AEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC---C---CcEEEechh
Confidence 58999999999999999999763 2 357898874
No 272
>PRK06526 transposase; Provisional
Probab=96.14 E-value=0.02 Score=58.23 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=23.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
+.-|+|+|.||+|||+||..|...+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3458999999999999999998766544
No 273
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.063 Score=61.23 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
-+..++++|.+|+||||+|+.|++.+
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 274
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.12 E-value=0.087 Score=52.51 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=26.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...++++.|.||+||||||.+++..+...| ..+..++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e 61 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQ 61 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCC
Confidence 345999999999999999977665554443 333333443
No 275
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.052 Score=61.05 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=38.3
Q ss_pred HcCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCHH----HHHHhhc----CCCCHHHHHHHhhc
Q 009432 279 DEGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDPA----GCAARNV----HGFTLDDIERMAGQ 344 (535)
Q Consensus 279 k~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e----~ci~RNi----h~VpeEvIe~M~kr 344 (535)
..|.+.++|||.. .........+++...+..-.+.+|.++. +.. ....|-. ..++.+.|.....+
T Consensus 116 ~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt-d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 116 SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT-DYHKIPVTILSRCIQLHLKHISQADIKDQLKI 189 (546)
T ss_pred hcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC-ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHH
Confidence 3455679999974 3445566777888887655565665553 432 2233332 36777766655544
No 276
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.11 E-value=0.004 Score=62.57 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=24.2
Q ss_pred EEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 188 LRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 188 L~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
++|++||||||+++.+.+.+... +..+.+++.|=
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~-~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN-GRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT--S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc-cCCceEEEcch
Confidence 58999999999999999987544 45667777663
No 277
>PRK04195 replication factor C large subunit; Provisional
Probab=96.11 E-value=0.025 Score=62.17 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..++|.|.||+||||+|+.|+..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5578999999999999999998763
No 278
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.034 Score=61.66 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=33.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH-cCCCCcEEEeCCceee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE-NGGDAPRIHSMDDYFM 225 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e-~gG~~~rIlS~DDyfr 225 (535)
...+|+|+|+.|+||||++.+|+.++.. .|+..+.++..|.|+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Ri 299 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRI 299 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccch
Confidence 4579999999999999999999987643 3333455667776554
No 279
>PRK05636 replicative DNA helicase; Provisional
Probab=96.09 E-value=0.039 Score=61.44 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
....||||.|-||+|||+||-.++.......+..+.+||...-......++- ... .+-.+ .++. ..
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~l--------s~~-s~v~~-~~i~----~g 328 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLL--------SAE-AEVRL-SDMR----GG 328 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHH--------HHh-cCCCH-HHHh----cC
Confidence 3567999999999999999998876543222334445554322111111000 000 00000 0010 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH-HHHHHhhcCceEEEEE
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ-FWATAKRSGYEVYILE 316 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~-f~~LAr~~G~~V~vIe 316 (535)
.+....|..+.+++.+ |.+.. +.|.|..+.+..+.+. ...+.+++|+.+++|+
T Consensus 329 ~l~~~e~~~~~~a~~~-l~~~~--l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvID 382 (505)
T PRK05636 329 KMDEDAWEKLVQRLGK-IAQAP--IFIDDSANLTMMEIRSKARRLKQKHDLKLIVVD 382 (505)
T ss_pred CCCHHHHHHHHHHHHH-HhcCC--EEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1222234445444443 55554 8888888888655443 4445666777665554
No 280
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.09 E-value=0.041 Score=57.45 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=29.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
..-++|.|.+|+|||+||.+|+..+.+. |..+.+++..++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~~~~l 195 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLHFPEF 195 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEEHHHH
Confidence 3468999999999999999999887654 344444444433
No 281
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.088 Score=60.71 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=22.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+||+|.+|+||||+|+.|++.+
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999999999999875
No 282
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.08 E-value=0.076 Score=56.83 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
.++|+|.+|+|||+|++.+...+.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 47889999999999999998876554
No 283
>PTZ00035 Rad51 protein; Provisional
Probab=96.07 E-value=0.025 Score=59.81 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.++|.||||||||+..|+-.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHH
Confidence 4569999999999999999988753
No 284
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.06 E-value=0.034 Score=54.31 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=23.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
...++++.|.|||||||||.+++......
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~ 47 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD 47 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc
Confidence 45699999999999999999876543333
No 285
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.082 Score=59.12 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=40.2
Q ss_pred cCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH--------HHHHHhhcCCCCHHHHHHHhhc
Q 009432 280 EGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP--------AGCAARNVHGFTLDDIERMAGQ 344 (535)
Q Consensus 280 ~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~--------e~ci~RNih~VpeEvIe~M~kr 344 (535)
.|.+.++|||.. ..+......+.+..++..-.+.+|.++. ++ ..|..-+....+.+.|..+..+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~-d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC-ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 355679999974 3445566777888877665666666653 32 2355555557777777655443
No 286
>PRK08727 hypothetical protein; Validated
Probab=96.04 E-value=0.045 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
.|+|+|.+|+|||||++.++..+.+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 49999999999999999998776554
No 287
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.03 E-value=0.034 Score=56.15 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
-+|+.|+||.||||||+.|+..
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 4899999999999999999975
No 288
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.03 E-value=0.0086 Score=57.80 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
...+|.++|.+|||||||++.|...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4558999999999999999999988754
No 289
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.02 E-value=0.041 Score=54.79 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=69.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc----------ccccccccccCCccCCcchhhhh
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK----------VEDSDVSKSSGSLRSKKPVTKMV 253 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~----------v~~~~~sk~~g~~r~kk~l~kkv 253 (535)
.+|-|+|--||||||+++.+..+ | +.|+..|-+-|..++. .+.++.....| .-++ +.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~~-----G--~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G--~inR---~~L 69 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFKAL-----G--IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDG--EINR---KVL 69 (225)
T ss_pred eEEEeecccccChHHHHHHHHHc-----C--CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCC--cccH---HHH
Confidence 47889999999999999999853 3 3466777665543320 00000000000 0011 112
Q ss_pred hhccCchH---------HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecC-CHH
Q 009432 254 MEYCYEPE---------MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYK-DPA 323 (535)
Q Consensus 254 ~ey~y~~e---------~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~-d~e 323 (535)
....|+.. +....+..|++.+.+++-.|. ..||+|..-+-.. .+..++ ..+.+|.|+-. ..+
T Consensus 70 G~~vF~~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~-r~ivlDiPLLFE~---~~~~~~----~~tvvV~cd~~~Ql~ 141 (225)
T KOG3220|consen 70 GKRVFSDPKKRQALNKITHPAIRKEMFKEILKLLLRGY-RVIVLDIPLLFEA---KLLKIC----HKTVVVTCDEELQLE 141 (225)
T ss_pred hHHHhCCHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC-eEEEEechHHHHH---hHHhhe----eeEEEEEECcHHHHH
Confidence 22333222 122345567777777788886 6899998543322 111111 23445555320 123
Q ss_pred HHHHhhcCCCCHHHHHHH
Q 009432 324 GCAARNVHGFTLDDIERM 341 (535)
Q Consensus 324 ~ci~RNih~VpeEvIe~M 341 (535)
...+|| ..++++-+.-
T Consensus 142 Rl~~Rd--~lse~dAe~R 157 (225)
T KOG3220|consen 142 RLVERD--ELSEEDAENR 157 (225)
T ss_pred HHHHhc--cccHHHHHHH
Confidence 455666 6666655544
No 290
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.01 E-value=0.052 Score=58.82 Aligned_cols=24 Identities=33% Similarity=0.682 Sum_probs=21.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
-.=.|+-|+||+||||||+.|+..
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999975
No 291
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.00 E-value=0.029 Score=61.27 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.3
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHc
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
++|+|.+|+|||||++.+...+.+.
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~ 157 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 8999999999999999998876554
No 292
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.055 Score=62.91 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=33.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH-HcCCCCcEEEeCCceee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV-ENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~-e~gG~~~rIlS~DDyfr 225 (535)
...+|+|+|+.|+||||++.+|+..+. ..|+..+.++..|.|+.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Ri 228 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRI 228 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccch
Confidence 457999999999999999999987664 33334556777777664
No 293
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.96 E-value=0.017 Score=64.47 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+.-|+|.|+||+|||++|+.++..+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhh
Confidence 34458999999999999999999865
No 294
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.96 E-value=0.04 Score=57.19 Aligned_cols=26 Identities=38% Similarity=0.404 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....|+++|.+|||||||++.|...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 44589999999999999999998654
No 295
>PRK09087 hypothetical protein; Validated
Probab=95.96 E-value=0.079 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.++|+|.+|||||||++.+++.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999999998864
No 296
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.95 E-value=0.0081 Score=55.54 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 177 RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 177 r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
+.....+.+|+|+|.+|+|||||.+.+.+.+...
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3334566899999999999999999998887665
No 297
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.95 E-value=0.014 Score=62.47 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+.-|+|+|.||+|||++|+.++..+
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh
Confidence 34568999999999999999998753
No 298
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.95 E-value=0.074 Score=62.53 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=41.5
Q ss_pred CCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHH----HHHHhhcC----CCCHHHHHHHhhcc
Q 009432 281 GNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDPA----GCAARNVH----GFTLDDIERMAGQW 345 (535)
Q Consensus 281 G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e----~ci~RNih----~VpeEvIe~M~krf 345 (535)
+.+.++|||. -.++......++++.++..-.++||.++. ..+ ++..|-.+ .++.+.|..+..++
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt-~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT-EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC-ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHH
Confidence 4456999995 45566777788888888777777777653 332 33344433 67777777666554
No 299
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.95 E-value=0.081 Score=48.66 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=52.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...++.+.|..|||||||++.|...+.. ....|.. |... . ..|.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~-~~~~--~--------------------------i~~~~~-- 70 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTW-GSTV--K--------------------------IGYFEQ-- 70 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEE-CCeE--E--------------------------EEEEcc--
Confidence 3458999999999999999999854211 1112211 1100 0 001111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeC--CCCCHHHHHHHHHHHhhcCc
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDD--RNLRVADFAQFWATAKRSGY 310 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDa--TN~~~~~R~~f~~LAr~~G~ 310 (535)
......++ +..++..+.+- .++|+|- ..++...+..+.++.++.+.
T Consensus 71 lS~G~~~r-v~laral~~~p--~illlDEP~~~LD~~~~~~l~~~l~~~~~ 118 (144)
T cd03221 71 LSGGEKMR-LALAKLLLENP--NLLLLDEPTNHLDLESIEALEEALKEYPG 118 (144)
T ss_pred CCHHHHHH-HHHHHHHhcCC--CEEEEeCCccCCCHHHHHHHHHHHHHcCC
Confidence 11111111 12233344444 4999996 56678899999998888753
No 300
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.94 E-value=0.057 Score=59.62 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=32.8
Q ss_pred hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
.|++|..- -+...++++.|.||||||+||.+++.....+.|..+..++.++
T Consensus 20 LD~~l~GG----~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 20 FDDITHGG----LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred HHHhhcCC----CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 45665432 1334599999999999999999986544444233444445443
No 301
>PLN02748 tRNA dimethylallyltransferase
Probab=95.92 E-value=0.02 Score=63.21 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
..++.+|+|+|..|||||+||..|+..+ ...|++.|.
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~------~~eii~~Ds 55 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHF------PVEIINADS 55 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhc------CeeEEcCch
Confidence 3556689999999999999999999874 136888885
No 302
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.91 E-value=0.053 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....-|+|+|.+|+|||||..+|..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~ 40 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTN 40 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3455789999999999999999875
No 303
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.90 E-value=0.0063 Score=56.44 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=17.7
Q ss_pred EEEEccCCChHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~ 206 (535)
|+|+|-+|+|||||++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999975
No 304
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.029 Score=62.93 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=33.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcC-CCCcEEEeCCceee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG-GDAPRIHSMDDYFM 225 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g-G~~~rIlS~DDyfr 225 (535)
...+|+|+|..|+||||++.+|...+...+ +..+.+++.|.|+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 456888999999999999999987665432 34566778887665
No 305
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.87 E-value=0.04 Score=58.17 Aligned_cols=40 Identities=15% Similarity=0.406 Sum_probs=29.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
.-++|.|.+|+|||+||..|+..+...| ..+..++.++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g-~~V~y~t~~~l~ 223 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG-KSVIYRTADELI 223 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC-CeEEEEEHHHHH
Confidence 4589999999999999999998876553 344444444443
No 306
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.87 E-value=0.14 Score=55.53 Aligned_cols=47 Identities=26% Similarity=0.224 Sum_probs=37.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH-HcCCCCcEEEeCCceeeehh
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV-ENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~-e~gG~~~rIlS~DDyfr~~~ 228 (535)
++.+|+|+|+.|.||||...+|+.++. ..+...+.+++.|.||.-..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~ 249 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAV 249 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHH
Confidence 377999999999999998777777665 34455677899999987543
No 307
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.86 E-value=0.015 Score=47.25 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=30.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+|+++|..|+||||++..|+..+.+.| .+++..||+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g---~~v~~~~d~iivD 40 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRG---KRVLLIDDYVLID 40 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEECCEEEEe
Confidence 478899999999999999999887643 2455666666543
No 308
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.86 E-value=0.081 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+.+++++|.||+||||+|+.++..+
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 35688889999999999999998753
No 309
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.84 E-value=0.097 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.++|.||||||+||-+++..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4669999999999999999998754
No 310
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.82 E-value=0.044 Score=51.32 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|.|..|||||||.+.|.-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3448999999999999999999854
No 311
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.82 E-value=0.046 Score=58.10 Aligned_cols=34 Identities=24% Similarity=0.030 Sum_probs=25.4
Q ss_pred hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432 168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+|.+|..- -+...++.|+|.||||||+||-+++-
T Consensus 115 LD~lLgGG----i~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 115 LDELLGGG----IETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred HHhhcCCC----CCCCeEEEEecCCCCChhHHHHHHHH
Confidence 45565532 13456999999999999999988863
No 312
>PRK09183 transposase/IS protein; Provisional
Probab=95.81 E-value=0.027 Score=57.15 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=23.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
....|+|.|.||+||||||..|...+...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34568899999999999999997654443
No 313
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.064 Score=60.12 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=57.9
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE 259 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~ 259 (535)
.+.++++.++|+||+|||||.+.|.+++... ..|++.-.... ..|-. ++++ ++--
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~--------ti~~i~GPiTv---------vsgK~---RRiT-----flEc 120 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ--------TIDEIRGPITV---------VSGKT---RRIT-----FLEC 120 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHh--------hhhccCCceEE---------eecce---eEEE-----EEeC
Confidence 4678999999999999999999999886432 22333211100 00000 0110 1101
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE
Q 009432 260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV 312 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V 312 (535)
+.. ...|+..++ +.+=. +.+||+.|.-..+--+|+.++..+|.+-
T Consensus 121 p~D----l~~miDvaK--IaDLV--lLlIdgnfGfEMETmEFLnil~~HGmPr 165 (1077)
T COG5192 121 PSD----LHQMIDVAK--IADLV--LLLIDGNFGFEMETMEFLNILISHGMPR 165 (1077)
T ss_pred hHH----HHHHHhHHH--hhhee--EEEeccccCceehHHHHHHHHhhcCCCc
Confidence 111 112333222 22223 6788998888877788999999999864
No 314
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.78 E-value=0.12 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
..-+|+++|.+||||||+.+.|...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 356899999999999999999887653
No 315
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.78 E-value=0.014 Score=60.27 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=32.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
....+|+|+|.||||||||+..|...+...| ..+.++..|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~-~~v~~i~~D~~ 73 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRG-LKVAVIAVDPS 73 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 4567888889999999999999998876653 45567777743
No 316
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.78 E-value=0.0079 Score=65.81 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=25.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
..=|++.|.||+||||||++|++.+..+|
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~G 291 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQG 291 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhcC
Confidence 34588899999999999999999987765
No 317
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=95.77 E-value=0.11 Score=52.52 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 270 MLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 270 llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
+.+.+..+++.-..-++|+|++...... ..+.+..+..+.++.+|.=.+
T Consensus 69 ~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~ 117 (270)
T TIGR00436 69 MMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKL 117 (270)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECe
Confidence 4444455554433237799998766544 455666677777776554443
No 318
>PF13245 AAA_19: Part of AAA domain
Probab=95.76 E-value=0.01 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=17.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
++++.|.|||||||++..+...+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 788899999999966555444443
No 319
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.76 E-value=0.1 Score=54.68 Aligned_cols=34 Identities=15% Similarity=-0.037 Sum_probs=25.4
Q ss_pred hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432 168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+|.+|..- - +...++.++|.||||||+||-+++-
T Consensus 85 LD~lLgGG-i---~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 85 LDGILGGG-I---ESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred HHHHhCCC-C---cCCeEEEEECCCCCCcCHHHHHHHH
Confidence 45665532 1 3456999999999999999988763
No 320
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.0093 Score=57.49 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=25.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
.+=|.++|.||+||||++++|++.+.+.|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999987763
No 321
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.75 E-value=0.058 Score=50.64 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.++|..|||||||++.|.-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34489999999999999999998653
No 322
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.032 Score=56.62 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=28.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...=+++.|.||+|||+||.+|...+.. .|..+.++..-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence 4456899999999999999999988763 34444343333
No 323
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.73 E-value=0.061 Score=47.79 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=18.2
Q ss_pred EEEEccCCChHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~ 204 (535)
|+|+|.+|+|||||.+.|.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999998
No 324
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.72 E-value=0.0092 Score=68.31 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..||.+.|.+|||+||-||||||.-+++. .|-.+.-++..|-+.
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAkq----aGYsVvEINASDeRt 364 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQ----AGYSVVEINASDERT 364 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHHh----cCceEEEeccccccc
Confidence 34789999999999999999999999975 254444445555544
No 325
>PRK13768 GTPase; Provisional
Probab=95.69 E-value=0.016 Score=58.50 Aligned_cols=38 Identities=32% Similarity=0.488 Sum_probs=30.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
..+|++.|.+||||||++..++..+... |..+.++..|
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECC
Confidence 3589999999999999999999887665 4455566655
No 326
>PRK00089 era GTPase Era; Reviewed
Probab=95.67 E-value=0.16 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
+.-+|+++|.||||||||.+.|.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~ 26 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALV 26 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999999987
No 327
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.66 E-value=0.065 Score=57.70 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=28.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...|||+.|.||+|||+||-.++.......|..+.++|.+
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE 232 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE 232 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3559999999999999999999865542223444556644
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.66 E-value=0.077 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3458999999999999999999854
No 329
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.018 Score=60.40 Aligned_cols=23 Identities=48% Similarity=0.756 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.-|+|.|+||.|||+||++++..
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh
Confidence 56999999999999999999854
No 330
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.63 E-value=0.13 Score=46.13 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=25.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
++|+|+.+........++..+...+.++.++.-.+
T Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 123 (174)
T cd01895 89 LLVIDATEGITEQDLRIAGLILEEGKALVIVVNKW 123 (174)
T ss_pred EEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEecc
Confidence 78999877665555667777777788776665544
No 331
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.63 E-value=0.06 Score=62.84 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGG 212 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG 212 (535)
...++.|+|.|||||||||-.++......|+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~ 89 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGG 89 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4569999999999999999886654444443
No 332
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.58 E-value=0.064 Score=56.18 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=26.0
Q ss_pred chhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432 167 NALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 167 ~~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+|.+|..- -+...+++++|.||+||||||..++.
T Consensus 84 ~lD~ll~gG----i~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 84 ELDKLLGGG----IETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred HHHHHhcCC----CCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 355555432 13366999999999999999998875
No 333
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.13 Score=56.96 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+|++|.||+||||+|+.+++.+
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998865
No 334
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.57 E-value=0.16 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..-+|+++|.+||||||+.+.+...+
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 44589999999999999999987664
No 335
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.57 E-value=0.011 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+|+|.|..|||||||+|.+++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4489999999999999999999875
No 336
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.55 E-value=0.02 Score=60.36 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+.-|+|+|.||+|||++|+.++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 445889999999999999999875
No 337
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.55 E-value=0.032 Score=61.85 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+.-|+|.|+||+|||++|+.|+..+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445678999999999999999999753
No 338
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.11 Score=56.77 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHH-cCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVE-NGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e-~gG~~~rIlS~DDyfr~ 226 (535)
....+|.|+|+.|+||||++++|+.++.. .++....++..|.|+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig 235 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG 235 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh
Confidence 34579999999999999999999865432 23344556677776654
No 339
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.55 E-value=0.026 Score=60.98 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=24.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.....|+|+|.+|||||||+++|++.+
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4456789999999999999999999764
No 340
>PLN03025 replication factor C subunit; Provisional
Probab=95.54 E-value=0.076 Score=55.08 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
+++.|.||+||||+|+.+++.+
T Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999865
No 341
>PRK08760 replicative DNA helicase; Provisional
Probab=95.51 E-value=0.11 Score=57.54 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
....||||.|-||.|||+||-.|+.......|..+.+||.+.
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM 268 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence 345699999999999999999998765333244455666543
No 342
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.50 E-value=0.013 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
+|.++|.+|||||||+.+|...+.+.|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999998876553
No 343
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.49 E-value=0.016 Score=53.93 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=27.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
+|.++|.+||||||+++.|...+.+.+. ...++..|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~-~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGK-RVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEeC
Confidence 3788999999999999999988877654 33454545
No 344
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.46 E-value=0.13 Score=54.15 Aligned_cols=140 Identities=20% Similarity=0.129 Sum_probs=76.7
Q ss_pred chhhhhcCCC--CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCcc
Q 009432 167 NALHLLKQPH--RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLR 244 (535)
Q Consensus 167 ~~~~ll~~p~--r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r 244 (535)
..+.|..++- .+.....=||+++|+.||||||....+.++++++ ...+|+...|=+.-. +.
T Consensus 107 ~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~--~~~HIlTIEDPIE~v---------------h~ 169 (353)
T COG2805 107 TLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKH--KAKHILTIEDPIEYV---------------HE 169 (353)
T ss_pred CHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhcc--CCcceEEecCchHhh---------------hc
Confidence 3445555552 2445566799999999999999888888887654 234566655432211 11
Q ss_pred CCcchhhhhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHH
Q 009432 245 SKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAG 324 (535)
Q Consensus 245 ~kk~l~kkv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ 324 (535)
.++.+.++ .| .+.-......+++.+|++.- -||+=+---+.+..+--+..|.. |-. ++-.+++.+...
T Consensus 170 skkslI~Q-RE-------vG~dT~sF~~aLraALReDP--DVIlvGEmRD~ETi~~ALtAAET-GHL-V~~TLHT~sA~~ 237 (353)
T COG2805 170 SKKSLINQ-RE-------VGRDTLSFANALRAALREDP--DVILVGEMRDLETIRLALTAAET-GHL-VFGTLHTNSAAK 237 (353)
T ss_pred chHhhhhH-HH-------hcccHHHHHHHHHHHhhcCC--CEEEEeccccHHHHHHHHHHHhc-CCE-EEEecccccHHH
Confidence 22222221 01 11112234456777888874 56655655566666555545544 432 244444445555
Q ss_pred HHHhhcCCCCH
Q 009432 325 CAARNVHGFTL 335 (535)
Q Consensus 325 ci~RNih~Vpe 335 (535)
.+.|-+.-++.
T Consensus 238 ti~RiidvFp~ 248 (353)
T COG2805 238 TIDRIIDVFPA 248 (353)
T ss_pred HHHHHHHhCCh
Confidence 56666654443
No 345
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.46 E-value=0.014 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.3
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHc
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
|+|+|.||+||||+.+++.+.+...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 7899999999999999999887643
No 346
>PRK05748 replicative DNA helicase; Provisional
Probab=95.41 E-value=0.12 Score=56.43 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=28.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...+||+.|.||.|||+||-.++.......|..+.+||..
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE 241 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE 241 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4459999999999999999998866443324444455544
No 347
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.39 E-value=0.023 Score=54.06 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e 205 (535)
++|+.|+.|||||||.+.+.+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 348
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.21 Score=55.87 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+|++|.+|+||||+|+.|++.+
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 349
>PRK08840 replicative DNA helicase; Provisional
Probab=95.36 E-value=0.13 Score=56.74 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=28.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...|||+.|-||.|||+||-.|+.......+..+.+||..
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE 255 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE 255 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4569999999999999999887765432223344455544
No 350
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.35 E-value=0.012 Score=59.15 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+..+++++|++|||||||.|.|...+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 455699999999999999999997654
No 351
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.35 E-value=0.022 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..-|+|+|.+|+||||+|..|.++
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357999999999999999988864
No 352
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.35 E-value=0.021 Score=59.21 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=35.4
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
...+++||++|.-|||||||.++|...+.... ..+.|++.|--.+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~-~ppYviNLDPAv~ 60 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKK-TPPYVINLDPAVR 60 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhcc-CCCeEEeCCHHHh
Confidence 45788999999999999999999988776543 3467778776544
No 353
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.34 E-value=0.02 Score=60.52 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
-|+|.|.||+||||+|+.|++.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH
Confidence 38899999999999999999876
No 354
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.31 E-value=0.029 Score=58.01 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=35.9
Q ss_pred CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCC-cEEEeCCcee
Q 009432 178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDA-PRIHSMDDYF 224 (535)
Q Consensus 178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~-~rIlS~DDyf 224 (535)
.....+++|-++|.||+||||+|+.|...+..++... +.++.+|-+-
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 4467899999999999999999999998876654332 4455666443
No 355
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.31 E-value=0.051 Score=59.74 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=8.3
Q ss_pred ccCCCCCCCCCCCCC
Q 009432 23 DHGGNGAGNAPFHNT 37 (535)
Q Consensus 23 ~hg~~~~~~~~~~~~ 37 (535)
+||+++. +.|+|++
T Consensus 253 ~~gf~~~-~~p~~~d 266 (569)
T KOG3671|consen 253 QVGFDSA-PAPNNND 266 (569)
T ss_pred CCCcccC-CCCCCCC
Confidence 4566553 3567777
No 356
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.23 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-.+|+.|.+|+||||+|+.|++.+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999875
No 357
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.30 E-value=0.017 Score=61.46 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=25.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
+.+.+|.++|++|||||||+.+|...+..
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999988753
No 358
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.28 E-value=0.13 Score=50.89 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+.+|+++|++|+|||||++.|...
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999988764
No 359
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.28 E-value=0.015 Score=50.88 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEccCCChHHHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
|+|.|.||.|||+||+.|++.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999887653
No 360
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.25 E-value=0.12 Score=57.38 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..++++|.+|+||||+|+.|++.+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHH
Confidence 4579999999999999999999865
No 361
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.24 E-value=0.024 Score=53.71 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
.+|.++|.+|||||||+++|...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 479999999999999999999887554
No 362
>PRK07004 replicative DNA helicase; Provisional
Probab=95.22 E-value=0.12 Score=56.88 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=28.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...|||+.|-||+|||+||..++.......|..+.+||..
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE 251 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME 251 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4558999999999999999998765432224444455543
No 363
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.21 E-value=0.023 Score=54.91 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
....|+|+|.+|+||||+|+.+.....+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3558999999999999999999877543
No 364
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.21 E-value=0.027 Score=60.03 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
..-+|+++|..||||||+.+.|...+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456999999999999999999988764
No 365
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.041 Score=63.12 Aligned_cols=26 Identities=42% Similarity=0.538 Sum_probs=23.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+.-|+|.|.+|||||+|+++|.+++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~ 455 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYY 455 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHh
Confidence 45568999999999999999999874
No 366
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.13 E-value=0.069 Score=58.97 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=27.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
..++++.|.||+|||+||.+++.....+| ..+..++.+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g-~~~~yis~e 310 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRG-ERCLLFAFE 310 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCC-CcEEEEEec
Confidence 44888899999999999999876544443 444555543
No 367
>PRK05595 replicative DNA helicase; Provisional
Probab=95.12 E-value=0.24 Score=54.07 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=28.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...+||+.|-||+|||+||-.++.......|..+.++|..
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE 239 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE 239 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3469999999999999999999865332223344455544
No 368
>PRK06321 replicative DNA helicase; Provisional
Probab=95.10 E-value=0.16 Score=56.13 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=28.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...||||.|-||.|||+||-.|+.......|..+.+||..
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLE 264 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLE 264 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 3459999999999999999998876432223444555544
No 369
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.10 E-value=0.015 Score=58.50 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=26.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
++|.++|.|||||||+|+.+.+. | . +..+++.|.++.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~----g-~-~~~~~~~d~ik~ 37 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN----Y-N-AVKYQLADPIKE 37 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc----C-C-cEEEehhHHHHH
Confidence 48999999999999999999753 2 2 232566555543
No 370
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.09 E-value=0.022 Score=65.57 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=29.6
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.+|.|.|.|||||||+|+.|++++ | + ..++.+.+++.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l----~-~-~~~~~g~~~r~ 38 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYL----G-Y-AYLDTGAMYRA 38 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----C-C-cEeecCcEeHH
Confidence 378999999999999999999886 2 2 45577777765
No 371
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.06 E-value=0.014 Score=58.45 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=25.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+.+++++|.||+||||+|+.|.. .+.+++.|.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--------~~~~~~~d~ 43 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--------KTLVLSFDM 43 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--------CCEEEeccc
Confidence 46799999999999999999852 235666665
No 372
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.04 E-value=0.037 Score=49.71 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=28.4
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
|++.|.+|+||||++..|+..+.+.+ ..+.++..|-
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g-~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG-KPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCc
Confidence 78999999999999999998887653 3445566653
No 373
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.03 E-value=0.03 Score=61.66 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+.-|+|.|+||+|||++|+.|+..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999865
No 374
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.03 E-value=0.17 Score=57.52 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+||+|.+|+||||+|+.|++.+
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999876
No 375
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.02 E-value=0.02 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEccCCChHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~ 206 (535)
|+++|.+|||||||.+.|...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999853
No 376
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.01 E-value=0.021 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.2
Q ss_pred cEEEEEEccCCChHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
..+++|.|.+|||||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999986
No 377
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.99 E-value=0.027 Score=55.05 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=22.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..++|+|.+|+||||||+.+.......
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 478999999999999999998765443
No 378
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.97 E-value=0.019 Score=55.18 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=29.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
...-++|.|.+|+|||+||..|...+... |..+..+...+++.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITASDLLD 88 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeecCceec
Confidence 34569999999999999999998877765 44555555555443
No 379
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.97 E-value=0.045 Score=59.51 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|.|.||+|||++|+.|++.+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999764
No 380
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.95 E-value=0.097 Score=51.80 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=26.6
Q ss_pred hhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 170 HLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 170 ~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
.+...++.. .. .+.|.|.+|+|||+|.+++...+.+.
T Consensus 25 ~ia~~~~~~--~~--~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 25 AIAENPGER--YN--PLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHSTTTS--SS--EEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCC--CC--ceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 455555541 12 25789999999999999998876553
No 381
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.92 E-value=0.081 Score=55.68 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-..++.|+||+|||+.|+.+++.+
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHh
Confidence 3478899999999999999999876
No 382
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.91 E-value=0.018 Score=51.25 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.+++|+|..|||||||.+.|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 48999999999999999999854
No 383
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.87 E-value=0.26 Score=52.29 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=78.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
+-.||++.|..|||||-||-.|+.++ + ..|++.|-+-.-....+-.+..+ ...+..+.+.++.... ++
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf---~---~EIINsDkmQvYkGldivTnK~t-----~~e~~gVPHHLlg~l~-~~ 73 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRF---P---GEIINSDKMQVYKGLDIVTNKIT-----LQERKGVPHHLLGHLH-PE 73 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhC---C---ceeecccceeeecCcccccccCC-----hhhcCCCChHHhCcCC-hH
Confidence 56799999999999999999999875 2 36777775533221111000000 0001122233332211 11
Q ss_pred H---HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHH---------------HHhhcCceEEEEEEecCCHH
Q 009432 262 M---EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWA---------------TAKRSGYEVYILEATYKDPA 323 (535)
Q Consensus 262 ~---ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~---------------LAr~~G~~V~vIe~~~~d~e 323 (535)
. ...++.....++++.+..|+ ..||+=++|+..... +.+ +..++-|.++++++.+ +..
T Consensus 74 ~e~t~~~F~~~a~~aie~I~~rgk-~PIv~GGs~~yi~al--~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda-~~~ 149 (348)
T KOG1384|consen 74 AEYTAGEFEDDASRAIEEIHSRGK-LPIVVGGSNSYLQAL--LSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDA-DQA 149 (348)
T ss_pred hhccHHHHHHHHHHHHHHHHhCCC-CCEEeCCchhhHHHH--hhcCCCcccCcccccCCCCCcccccceEEEEEec-chH
Confidence 1 12344455556677778887 346666788764332 111 0112337888999987 555
Q ss_pred HHHHhhcC-------CCCHHHHHHHhhccc
Q 009432 324 GCAARNVH-------GFTLDDIERMAGQWE 346 (535)
Q Consensus 324 ~ci~RNih-------~VpeEvIe~M~krfE 346 (535)
++..|--. .-=.|.|..|+..+.
T Consensus 150 VL~~~l~~RVD~Ml~~Gl~eE~~~f~~~~~ 179 (348)
T KOG1384|consen 150 VLFERLDKRVDDMLESGLLEELRDFYDPYN 179 (348)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHhhhhh
Confidence 55444332 222345556655544
No 384
>COG3911 Predicted ATPase [General function prediction only]
Probab=94.85 E-value=0.025 Score=54.10 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++||.|.||+|||||.+.|+++
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHc
Confidence 368999999999999999999875
No 385
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.84 E-value=0.094 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.+||+.|-||||||.||-.|+..+
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 386
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.84 E-value=0.022 Score=49.50 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEEccCCChHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e 205 (535)
=|+|+|.+|||||||...|..
T Consensus 3 ki~~~G~~~~GKstl~~~l~~ 23 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLG 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999874
No 387
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.32 Score=47.29 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...+|+++|++|+||-||....+..+.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~ 30 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLA 30 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhc
Confidence 356999999999999999998887763
No 388
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.23 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
-+..+|++|.+|+||||+|+.|++.+
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 35678999999999999999999875
No 389
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.83 E-value=0.052 Score=62.72 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+.-|+|.|.||+|||++|+.|+..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 445888999999999999999965
No 390
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.82 E-value=0.038 Score=56.81 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=28.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
+..+|-++|.||+|||||...|...+.+.| ..+-|+..|
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVD 66 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVD 66 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEEC
Confidence 356999999999999999999998888764 455565544
No 391
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.81 E-value=0.11 Score=60.02 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=22.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+.-|+|+|.||+||||||+.|+..+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Confidence 344568899999999999999998753
No 392
>PRK08506 replicative DNA helicase; Provisional
Probab=94.80 E-value=0.2 Score=55.23 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=29.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...||||.|-||.|||+||-.++...... |..+.+||..
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlE 229 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLE 229 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCc
Confidence 44599999999999999999988765433 4445566654
No 393
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.79 E-value=0.1 Score=55.40 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=25.3
Q ss_pred hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432 168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+|.+|..- -+...+++++|.||+|||+||-.|+.
T Consensus 112 LD~lL~GG----~~~g~i~~i~G~~g~GKT~l~~~l~~ 145 (342)
T PLN03186 112 LDKILEGG----IETGSITEIYGEFRTGKTQLCHTLCV 145 (342)
T ss_pred HHHhhcCC----CcCceEEEEECCCCCCccHHHHHHHH
Confidence 45555432 13356999999999999999988774
No 394
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.79 E-value=0.023 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+|+++|.+||||||+++.|...+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4489999999999999999998764
No 395
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.77 E-value=0.21 Score=56.93 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+|+.|.+|+||||+|+.+++.+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 396
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=94.75 E-value=0.023 Score=66.86 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=32.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.++|.+.|+|||||||+|+.|++.+ + ...++.+.++|..
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l----~--~~~~~~g~~yRa~ 72 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRL----G--AQCLNTGSFYRAF 72 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh----C--CcEEeHHHHHHHH
Confidence 3799999999999999999999886 2 2466888887764
No 397
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.72 E-value=0.037 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
-|+|.|.||+|||++|+.|+..+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999753
No 398
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.69 E-value=0.03 Score=54.66 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
++.|.|+|.+|||||||.+.+...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 399
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.69 E-value=0.025 Score=49.17 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.6
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|++.|.+|+|||||.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 400
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.67 E-value=0.55 Score=52.89 Aligned_cols=63 Identities=25% Similarity=0.305 Sum_probs=38.4
Q ss_pred CCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhcC----CCCHHHHHHHhhc
Q 009432 281 GNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNVH----GFTLDDIERMAGQ 344 (535)
Q Consensus 281 G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNih----~VpeEvIe~M~kr 344 (535)
|.+.+||||. -..+......+++...+..-.++||.+.. ++ .....|-.+ .++.+.|.....+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt-d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~ 187 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT-DPLKLPATILSRTQHFRFKQIPQNSIISHLKT 187 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC-ChhhCchHHHhhceeEEcCCCCHHHHHHHHHH
Confidence 4456999996 44556667778888877655566666553 43 234445433 6666666665543
No 401
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.67 E-value=0.025 Score=57.51 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.++|+|+||+||||||+.++..+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998764
No 402
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.055 Score=60.52 Aligned_cols=36 Identities=33% Similarity=0.599 Sum_probs=30.2
Q ss_pred hhhcCCCCCCC---CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 170 HLLKQPHRATR---PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 170 ~ll~~p~r~~r---~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
++|+.|.++++ .-|.=|+|+|+||.|||-|||+++-
T Consensus 321 efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG 359 (752)
T KOG0734|consen 321 EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG 359 (752)
T ss_pred HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc
Confidence 68899976554 4566699999999999999999984
No 403
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.64 E-value=0.021 Score=55.20 Aligned_cols=21 Identities=48% Similarity=0.738 Sum_probs=19.0
Q ss_pred EEEEccCCChHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~ 206 (535)
||+.|.|||||||+.+++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 688999999999999998864
No 404
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.64 E-value=0.042 Score=59.00 Aligned_cols=121 Identities=16% Similarity=0.116 Sum_probs=61.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhh-hhhhccCchHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTK-MVMEYCYEPEM 262 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~k-kv~ey~y~~e~ 262 (535)
-+|+++|.+||||||+.+.|.+++.+... ..+|+..+|-....... ...+.. ...+...+ .
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~-~~~IvtiEdp~E~~~~~---------------~~~~~~~~q~evg~~--~ 211 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYP-DRKIVTYEDPIEYILGS---------------PDDLLPPAQSQIGRD--V 211 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEecCchhccCC---------------CceeecccccccCCC--c
Confidence 37899999999999999999887643211 23455544432211100 000000 00000000 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
..+...++.+|+.. +..++|.-.= ..+.....++.|.. |.. .+-.+++.+....+.|=..
T Consensus 212 -----~~~~~~l~~aLR~~-PD~I~vGEiR-d~et~~~al~aa~T-GH~-v~tTlHa~s~~~ai~Rl~~ 271 (372)
T TIGR02525 212 -----DSFANGIRLALRRA-PKIIGVGEIR-DLETFQAAVLAGQS-GHF-CLGTLHVKSPGEAISRCLQ 271 (372)
T ss_pred -----cCHHHHHHHhhccC-CCEEeeCCCC-CHHHHHHHHHHHhc-CCc-EEEeeCCCCHHHHHHHHHH
Confidence 01223456667665 4567776543 44555555655544 544 3455555566666666443
No 405
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.62 E-value=0.026 Score=59.95 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=28.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
.+..|+++|..|||||||++.|...+. ...+++...|.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~----~~~rivtiEd~ 198 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP----PQERLITIEDT 198 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC----CCCCEEEECCC
Confidence 456799999999999999999987642 22355565554
No 406
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=94.60 E-value=0.094 Score=60.24 Aligned_cols=14 Identities=36% Similarity=0.325 Sum_probs=8.6
Q ss_pred hhhhhhhhhhccCC
Q 009432 13 DNERRLKLIRDHGG 26 (535)
Q Consensus 13 ~~~~~~~~~r~hg~ 26 (535)
..||-||+++--|.
T Consensus 228 ~~e~~lk~~~~~l~ 241 (830)
T KOG1923|consen 228 EKERSLKAIARLLE 241 (830)
T ss_pred HHHHHHHHHHHhcc
Confidence 46777777665443
No 407
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.60 E-value=0.027 Score=57.03 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=28.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
..++|.|.||+|||+||..|+..+... |..+.+++..+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it~~~ 137 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITVAD 137 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEHHH
Confidence 378999999999999999999887654 33444444333
No 408
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.58 E-value=0.038 Score=56.87 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
+|.++|.+|||||||+..|...|...|
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 799999999999999999999987765
No 409
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.58 E-value=0.027 Score=49.44 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=18.4
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+|+|.+|||||||...|..
T Consensus 3 i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999864
No 410
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=94.56 E-value=0.36 Score=49.10 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=62.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
++++|+.|--|+||||+|..|+.++...| ..+.++..|---. ...+... . ...... ++ -..+.
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g-~~vl~iD~D~~n~-~~~~~~~------l--~~~~~~----i~---~~~~i 65 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKG-QKPLCIDTDPVNA-TFEGYKA------L--NVRRLN----IM---DGDEI 65 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCC-CCEEEEECCCCCc-hhhhHHh------c--CCccee----cc---cCCcc
Confidence 56788889999999999999999887654 3445555552211 1111000 0 000000 00 00011
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHH------HHHHhhcCceEEEEEEec
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQF------WATAKRSGYEVYILEATY 319 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f------~~LAr~~G~~V~vIe~~~ 319 (535)
... .+...+...+..+. .+|||+.-.......+| .+++.+.|+.+++..+..
T Consensus 66 ~~r---~fD~Lve~i~~~~~--dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~ 123 (241)
T PRK13886 66 NTR---NFDALVEMIASTEG--DVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVT 123 (241)
T ss_pred chh---hHHHHHHHHhccCC--CEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEEC
Confidence 111 12223344444555 68898765554444443 578899999997776653
No 411
>PRK06620 hypothetical protein; Validated
Probab=94.56 E-value=0.026 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.886 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
-.++|+|.||||||||++.++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999998754
No 412
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.53 E-value=0.045 Score=57.74 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=27.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+..||++|.+|||||||++.|...+.+.. ..-+++...|-
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~-~~~rivtiEd~ 183 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASA-PEDRLVILEDT 183 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCC-CCceEEEecCC
Confidence 34689999999999999999987653211 12355555543
No 413
>PRK06904 replicative DNA helicase; Validated
Probab=94.53 E-value=0.25 Score=54.65 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=28.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...||||.|-||.|||+||-.|+.......|..+.+||..
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE 259 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE 259 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 4459999999999999999888765433224444566654
No 414
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.52 E-value=0.027 Score=52.14 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=18.4
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+|+|.||+|||||++.+..
T Consensus 4 v~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 77999999999999999874
No 415
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.52 E-value=0.095 Score=60.94 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
+++|.|.||+||||+++.+.+.+...
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 78999999999999999998776443
No 416
>PRK09165 replicative DNA helicase; Provisional
Probab=94.52 E-value=0.29 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...||||.|.||.||||||-.++...
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~ 241 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNA 241 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHH
Confidence 45699999999999999998876554
No 417
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.075 Score=60.25 Aligned_cols=64 Identities=27% Similarity=0.423 Sum_probs=0.0
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA 265 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~ 265 (535)
|+|||+||+|||-|||+++ .|.|-....| ..-+++.+ |.-+.+.+
T Consensus 548 vLL~GPPGCGKTLlAKAVA---NEag~NFisV---------------------------KGPELlNk-----YVGESErA 592 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVA---NEAGANFISV---------------------------KGPELLNK-----YVGESERA 592 (802)
T ss_pred eEEeCCCCccHHHHHHHHh---hhccCceEee---------------------------cCHHHHHH-----HhhhHHHH
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEe
Q 009432 266 YRSSMLKAFTRTLDEGNFTIVIVD 289 (535)
Q Consensus 266 ~~q~llk~akkaLk~G~f~~VIVD 289 (535)
+++..+++ +...++++.+|
T Consensus 593 VR~vFqRA-----R~saPCVIFFD 611 (802)
T KOG0733|consen 593 VRQVFQRA-----RASAPCVIFFD 611 (802)
T ss_pred HHHHHHHh-----hcCCCeEEEec
No 418
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.51 E-value=0.046 Score=56.80 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=27.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+..|+++|.+||||||+++.|...+... ...-+|+...|.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~-~~~~ri~tiEd~ 171 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKN-DPTDRVVIIEDT 171 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcc-CCCceEEEECCc
Confidence 3468899999999999999998775321 012355555553
No 419
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.49 E-value=0.46 Score=45.90 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEEEccCCChHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~ 204 (535)
.+++|+|..|||||||.|.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 489999999999999999987
No 420
>PRK15494 era GTPase Era; Provisional
Probab=94.46 E-value=0.33 Score=51.17 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432 174 QPHRATRPDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 174 ~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.++.....+..-|+|+|.||+|||||...|..
T Consensus 43 ~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~ 74 (339)
T PRK15494 43 KFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIG 74 (339)
T ss_pred ccccccccceeEEEEEcCCCCCHHHHHHHHhC
Confidence 33444445556799999999999999999874
No 421
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.45 E-value=0.65 Score=51.05 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
-++|.|.+|+|||||++.+...+.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~ 168 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES 168 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36788999999999999999877554
No 422
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43 E-value=0.53 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..++++|.+|.||||+|+.|++.+
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5678999999999999999999875
No 423
>PRK13764 ATPase; Provisional
Probab=94.42 E-value=0.046 Score=62.08 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=24.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.+..|+++|.+||||||+++.|...+..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456999999999999999999987643
No 424
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.41 E-value=0.031 Score=50.18 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEccCCChHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e 205 (535)
-|+++|.+|+|||||++++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999874
No 425
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.40 E-value=0.61 Score=44.27 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+++.|.+|.||||+|+.+++.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998875
No 426
>PRK06851 hypothetical protein; Provisional
Probab=94.39 E-value=0.055 Score=58.05 Aligned_cols=30 Identities=37% Similarity=0.568 Sum_probs=25.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
...++||.|.||+|||||.++|.+.+.+.|
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g 58 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKG 58 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 345899999999999999999998876653
No 427
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.38 E-value=0.03 Score=63.40 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.++.+++|+|+||+||||||+.|++.+.+
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 35569999999999999999999998643
No 428
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=94.34 E-value=0.41 Score=48.24 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=25.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
++|+|++......-..++..++..+.++.++.-.+
T Consensus 92 i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 92 LVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 88999988766666677778888888776654433
No 429
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.037 Score=55.43 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=22.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
++|-+-|+.||||||+|+.|+++|
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~L 28 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKL 28 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHh
Confidence 789999999999999999999986
No 430
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.32 E-value=0.033 Score=49.71 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEEccCCChHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e 205 (535)
=|+|+|.+|+|||||.+++..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378899999999999999874
No 431
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.31 E-value=0.047 Score=52.23 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=23.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++|+|++|+|||.+|+.|++.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l 27 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL 27 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999986
No 432
>PHA02624 large T antigen; Provisional
Probab=94.30 E-value=0.05 Score=61.75 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=25.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+++.+|++.|+|||||||||+.|.+.+
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L 455 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLC 455 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 677899999999999999999999875
No 433
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.30 E-value=0.034 Score=50.39 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.2
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+++|.+|+|||||++++..
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78889999999999999874
No 434
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.30 E-value=0.042 Score=53.37 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+......+|.++|.+|||||||.+.+...+
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344567899999999999999999988764
No 435
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.30 E-value=0.51 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..++++|.+|+||||+|+.|++.+
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999875
No 436
>PRK07773 replicative DNA helicase; Validated
Probab=94.29 E-value=0.3 Score=57.92 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=30.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
...+|||.|-||+|||+||-.++.......+..+.+||.+.
T Consensus 216 ~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm 256 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM 256 (886)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45699999999999999999988765433344555666543
No 437
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.28 E-value=0.043 Score=55.10 Aligned_cols=129 Identities=13% Similarity=0.106 Sum_probs=65.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
....|+++|.+||||||+++.|.+.+... .-+++...|......... ... .+...
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~---~~~iv~iEd~~E~~l~~~-------------~~~-------~~~~~-- 180 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE---DERIVTIEDPPELRLPGP-------------NQI-------QIQTR-- 180 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT---TSEEEEEESSS-S--SCS-------------SEE-------EEEEE--
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc---ccceEEeccccceeeccc-------------ceE-------EEEee--
Confidence 36799999999999999999998875322 134544443222111100 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHH
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDI 338 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvI 338 (535)
.. ...+.+.++.+|+.+ +..+||.-.-.... . .+++ |...|-.+.+-.+++.+....+.|=.. ..+.+.+
T Consensus 181 ~~---~~~~~~~l~~~LR~~-pD~iiigEiR~~e~-~-~~~~-a~~tGh~~~~tT~Ha~s~~~~i~Rl~~l~~~~~~~~l 253 (270)
T PF00437_consen 181 RD---EISYEDLLKSALRQD-PDVIIIGEIRDPEA-A-EAIQ-AANTGHLGSLTTLHANSAEDAIERLADLGMEMDPESL 253 (270)
T ss_dssp TT---TBSHHHHHHHHTTS---SEEEESCE-SCHH-H-HHHH-HHHTT-EEEEEEEE-SSHHHHHHHHHHHCCTSCHHHH
T ss_pred cC---cccHHHHHHHHhcCC-CCcccccccCCHhH-H-HHHH-hhccCCceeeeeeecCCHHHHHHHHHHHhcccCHHHH
Confidence 00 001223345567666 46888886554433 3 2344 444566665666666677766666433 3565655
Q ss_pred HHHh
Q 009432 339 ERMA 342 (535)
Q Consensus 339 e~M~ 342 (535)
..+.
T Consensus 254 ~~~l 257 (270)
T PF00437_consen 254 RSRL 257 (270)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 438
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.27 E-value=0.18 Score=54.41 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.9
Q ss_pred EEEEccCCChHHHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
++|+|.||+|||||++.|+..+..
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 488999999999999999887654
No 439
>CHL00176 ftsH cell division protein; Validated
Probab=94.27 E-value=0.077 Score=60.75 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.+.-|+|.|.||+|||+||+.|+..
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445899999999999999999865
No 440
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.26 E-value=0.042 Score=58.00 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=27.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+..|+++|.+|||||||.+.|...+. ..-+|+...|-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip----~~~ri~tiEd~ 196 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP----AIERLITVEDA 196 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC----CCCeEEEecCC
Confidence 45799999999999999999987642 22356565553
No 441
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.25 E-value=0.17 Score=52.27 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+..++-|+|-+||||||++|.|...+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 345589999999999999999999764
No 442
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.24 E-value=0.035 Score=53.43 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..++.|+|..|||||||++.|+-.+
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4489999999999999999998653
No 443
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.22 E-value=0.21 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEccCCChHHHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
++|+|.+|+|||||++.+...+.+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~ 167 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIES 167 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHH
Confidence 788999999999999999876543
No 444
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.21 E-value=0.058 Score=56.71 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+..|+++|.+|||||||++.|....
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999998753
No 445
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.21 E-value=0.052 Score=56.56 Aligned_cols=40 Identities=30% Similarity=0.494 Sum_probs=31.3
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
=++|.|.||.|||+||+.+++.+ +....+|.+.+|+....
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l~p~d 84 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDLLPSD 84 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCCCHHH
Confidence 37889999999999999999876 35567777776665443
No 446
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.20 E-value=0.041 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=18.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.++.|+||+||||++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78999999999998887776665
No 447
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.19 E-value=0.038 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|+-.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999998653
No 448
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.12 Score=56.78 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.5
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...+..|+|.|+||+|||+||++++..
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhh
Confidence 355669999999999999999999964
No 449
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.15 E-value=0.048 Score=49.97 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...+|+|.|-=|||||||+|.|++.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 44699999999999999999999875
No 450
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.14 E-value=0.043 Score=53.18 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|.-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999997543
No 451
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.13 E-value=0.038 Score=53.51 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..++.|+|..|||||||++.|.-.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998643
No 452
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.12 E-value=0.041 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 448999999999999999999854
No 453
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.10 E-value=0.044 Score=50.18 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+|+|.+|||||||.+.|..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhc
Confidence 356699999999999999999975
No 454
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.10 E-value=0.043 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|.-.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998653
No 455
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.036 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
++.|+|..|||||||++.|...+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998643
No 456
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.09 E-value=0.039 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|+-.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999998643
No 457
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.09 E-value=0.042 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.227 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|.-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34489999999999999999998643
No 458
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.08 E-value=0.043 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|.+|||||||++.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3448999999999999999999865
No 459
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.08 E-value=0.039 Score=49.58 Aligned_cols=20 Identities=45% Similarity=0.581 Sum_probs=18.4
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+++|.||||||||.+++..
T Consensus 3 v~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999874
No 460
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=94.08 E-value=0.04 Score=49.11 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.3
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+|+|.+|||||||.+.|..
T Consensus 2 i~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999874
No 461
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.07 E-value=0.04 Score=53.96 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||++.|.-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4458999999999999999999854
No 462
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.06 E-value=0.039 Score=50.10 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.4
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+++|.+|||||||++.|..
T Consensus 3 i~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999874
No 463
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=94.04 E-value=0.25 Score=48.00 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+-|.++|.+++|||||+.+|....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~ 26 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVL 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987643
No 464
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.041 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999998543
No 465
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.04 E-value=0.041 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|.-.+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34489999999999999999998653
No 466
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.02 E-value=0.041 Score=57.18 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.++++|.||+||||+|+.++..+
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHh
Confidence 57889999999999999999764
No 467
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.045 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|.-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998643
No 468
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.01 E-value=0.039 Score=48.61 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=18.3
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+++|.+|+|||||.++|..
T Consensus 2 i~i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc
Confidence 68999999999999999974
No 469
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.00 E-value=0.18 Score=60.33 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=24.3
Q ss_pred EEEEe-CCCCCHHHHHHHHHHHhhcCceEEEE
Q 009432 285 IVIVD-DRNLRVADFAQFWATAKRSGYEVYIL 315 (535)
Q Consensus 285 ~VIVD-aTN~~~~~R~~f~~LAr~~G~~V~vI 315 (535)
++||| +..+.......+++.|...|.++++|
T Consensus 436 vlIVDEASMv~~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 436 VLVIDEAGMVGTRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred EEEEECcccCCHHHHHHHHHhhhhCCCEEEEE
Confidence 88888 67777788888888888888766444
No 470
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.99 E-value=0.043 Score=56.14 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.++++|.||+||||+|+.+++.+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37799999999999999998875
No 471
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.047 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||++.|+-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3448999999999999999999854
No 472
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.94 E-value=0.044 Score=49.22 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+++|.+|+|||||.++|..
T Consensus 3 i~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999875
No 473
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.93 E-value=0.044 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.+++|+|..|||||||.|.|.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 58999999999999999998743
No 474
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.93 E-value=0.046 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|.-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34489999999999999999998643
No 475
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.92 E-value=0.37 Score=49.98 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=29.7
Q ss_pred hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432 168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGG 212 (535)
Q Consensus 168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG 212 (535)
.|.+|- +- -+...++=++|.+||||||+|-+++......|+
T Consensus 49 LD~~LG--GG--l~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~ 89 (279)
T COG0468 49 LDEALG--GG--LPRGRITEIYGPESSGKTTLALQLVANAQKPGG 89 (279)
T ss_pred HHHHhc--CC--cccceEEEEecCCCcchhhHHHHHHHHhhcCCC
Confidence 455555 32 256679999999999999999998766544444
No 476
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.91 E-value=0.072 Score=55.86 Aligned_cols=40 Identities=28% Similarity=0.416 Sum_probs=31.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
.+..+|-++|.||+|||||.-.|...+.+.| ..+.|+..|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G-~rVaVlAVD 88 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERG-HRVAVLAVD 88 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCC-cEEEEEEEC
Confidence 3456999999999999999999988888775 344555544
No 477
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.90 E-value=0.079 Score=55.18 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=25.8
Q ss_pred CCCCcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
....-.+|-|.|.||||||||.+.+...+.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678999999999999999999988753
No 478
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.89 E-value=0.047 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
=|+|.|.||+|||++|+.|...+
T Consensus 24 ~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 24 HLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -EEEES-CCCTHHHHHHHHHHCS
T ss_pred CeEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998754
No 479
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=93.88 E-value=0.59 Score=47.73 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.|.|+|.+|||||||+.+|.-.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999998743
No 480
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.86 E-value=0.049 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|.-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34589999999999999999998754
No 481
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.046 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998654
No 482
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.85 E-value=0.33 Score=53.00 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
..++++|.+|+|||||++.|...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3688999999999999999987643
No 483
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.85 E-value=0.05 Score=52.43 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|..|||||||++.|.-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998653
No 484
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.84 E-value=0.057 Score=59.07 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.-|+|+|+||+||||||+.|++.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999875
No 485
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.82 E-value=0.046 Score=49.30 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.3
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+|+|.+|+|||||.+++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~ 21 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKH 21 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68899999999999999974
No 486
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.81 E-value=0.054 Score=52.96 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|.+|||||||++.|.-.+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34589999999999999999998654
No 487
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.81 E-value=0.048 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..++.|+|..|||||||.+.|+-.+
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4489999999999999999998653
No 488
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.81 E-value=0.048 Score=49.11 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEEEccCCChHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e 205 (535)
=|+++|.+|+|||||+.++..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478899999999999998874
No 489
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.81 E-value=0.55 Score=41.57 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=22.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
++|+|+.......-..+.+++++.+.++.++.-.+
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~ 115 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKV 115 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhcCCCEEEEEECc
Confidence 77888865433333456677777787776666554
No 490
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.79 E-value=0.044 Score=51.54 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.2
Q ss_pred EEEEccCCChHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~ 206 (535)
|+|+|..|||||||+++|...
T Consensus 4 imliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999999854
No 491
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.79 E-value=0.045 Score=50.84 Aligned_cols=29 Identities=41% Similarity=0.641 Sum_probs=19.5
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEE
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRI 217 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rI 217 (535)
|+|-|.||.||||+|+.|++.+ ++...||
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeEE
Confidence 6899999999999999999863 4444444
No 492
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.79 E-value=0.049 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..++.|+|..|||||||.+.|+-.+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4489999999999999999998653
No 493
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.79 E-value=0.046 Score=49.67 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.5
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+|+|.+|+|||||.+.|..
T Consensus 3 v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999974
No 494
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.18 Score=54.09 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..|.=|+|.|+||+|||-|||+++..
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45667899999999999999999853
No 495
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.054 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999854
No 496
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.78 E-value=0.046 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||++.|.-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4458999999999999999999764
No 497
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.049 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||++.|.-.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 498
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.78 E-value=0.051 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||++.|+-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 499
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.77 E-value=0.49 Score=55.10 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA 265 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~ 265 (535)
++|.|.||+||||+|+.|.... ....+..+........
T Consensus 55 lLL~GPpGtGKTTLA~aIA~~~------~~~f~~lna~~~~i~d------------------------------------ 92 (725)
T PRK13341 55 LILYGPPGVGKTTLARIIANHT------RAHFSSLNAVLAGVKD------------------------------------ 92 (725)
T ss_pred EEEECCCCCCHHHHHHHHHHHh------cCcceeehhhhhhhHH------------------------------------
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--------CCCHHH
Q 009432 266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--------GFTLDD 337 (535)
Q Consensus 266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--------~VpeEv 337 (535)
..+.+.......-..+...++|||....-.......+--.-+.+.-+.+...+.........+-.. ..+.+.
T Consensus 93 ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~ed 172 (725)
T PRK13341 93 LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDED 172 (725)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHH
Q ss_pred HHHHhhcc
Q 009432 338 IERMAGQW 345 (535)
Q Consensus 338 Ie~M~krf 345 (535)
+..+.+++
T Consensus 173 i~~IL~~~ 180 (725)
T PRK13341 173 LHQLLKRA 180 (725)
T ss_pred HHHHHHHH
No 500
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.75 E-value=0.05 Score=52.34 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=0.0
Q ss_pred EEEEEccCCChHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~ 204 (535)
++.|+|..|||||||.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred EEEEECCCCCCHHHHHHHHh
Done!