Query 009432
Match_columns 535
No_of_seqs 254 out of 1476
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvl_A Bifunctional polynucleo 99.6 1.2E-15 4.1E-20 160.5 13.8 153 143-348 219-382 (416)
2 1ly1_A Polynucleotide kinase; 99.6 6.1E-15 2.1E-19 133.6 12.6 138 183-348 2-146 (181)
3 2axn_A 6-phosphofructo-2-kinas 99.5 1.9E-14 6.4E-19 156.1 13.1 159 175-358 27-204 (520)
4 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 9.7E-14 3.3E-18 136.4 16.8 138 182-352 3-143 (260)
5 1ltq_A Polynucleotide kinase; 99.5 3.7E-13 1.3E-17 133.1 12.8 138 183-348 2-146 (301)
6 2rhm_A Putative kinase; P-loop 99.3 6.7E-12 2.3E-16 115.1 11.3 121 181-330 3-123 (193)
7 1bif_A 6-phosphofructo-2-kinas 99.3 1.1E-11 3.6E-16 132.0 13.4 154 177-356 33-206 (469)
8 1gvn_B Zeta; postsegregational 99.3 2.1E-11 7E-16 122.3 13.8 144 180-348 30-188 (287)
9 2yvu_A Probable adenylyl-sulfa 99.3 1.1E-10 3.7E-15 107.7 15.3 120 181-329 11-130 (186)
10 1qhx_A CPT, protein (chloramph 99.2 5.8E-11 2E-15 108.0 13.2 129 183-331 3-132 (178)
11 2vli_A Antibiotic resistance p 99.2 9.1E-11 3.1E-15 106.9 11.7 136 182-347 4-144 (183)
12 3t61_A Gluconokinase; PSI-biol 99.2 1.7E-10 5.7E-15 107.8 13.0 129 183-347 18-150 (202)
13 2p5t_B PEZT; postsegregational 99.2 2E-10 7E-15 112.1 13.2 123 180-329 29-154 (253)
14 1m7g_A Adenylylsulfate kinase; 99.1 5.9E-10 2E-14 105.3 13.7 119 182-329 24-149 (211)
15 1knq_A Gluconate kinase; ALFA/ 99.1 3.3E-09 1.1E-13 96.4 18.2 133 181-347 6-143 (175)
16 1tev_A UMP-CMP kinase; ploop, 99.1 1.1E-09 3.9E-14 99.8 14.0 127 182-329 2-131 (196)
17 4eun_A Thermoresistant glucoki 99.1 1E-09 3.5E-14 102.8 13.4 134 181-347 27-164 (200)
18 3uie_A Adenylyl-sulfate kinase 99.0 2.1E-09 7.1E-14 100.7 13.0 121 181-332 23-143 (200)
19 1x6v_B Bifunctional 3'-phospho 99.0 3.8E-09 1.3E-13 117.3 15.2 121 182-331 51-171 (630)
20 1m8p_A Sulfate adenylyltransfe 99.0 5.8E-09 2E-13 114.5 15.8 124 180-332 393-516 (573)
21 2cdn_A Adenylate kinase; phosp 99.0 1.5E-09 5.2E-14 101.2 8.9 141 180-345 17-164 (201)
22 1qf9_A UMP/CMP kinase, protein 98.9 6.5E-09 2.2E-13 94.6 11.4 122 182-329 5-128 (194)
23 3fb4_A Adenylate kinase; psych 98.9 3.2E-09 1.1E-13 99.7 9.5 120 185-330 2-125 (216)
24 3dl0_A Adenylate kinase; phosp 98.9 1.6E-09 5.4E-14 102.0 7.3 120 185-330 2-125 (216)
25 3lw7_A Adenylate kinase relate 98.9 6.8E-09 2.3E-13 92.1 9.9 118 184-331 2-121 (179)
26 2pez_A Bifunctional 3'-phospho 98.9 3.4E-08 1.2E-12 90.3 14.7 120 182-331 4-124 (179)
27 4gp7_A Metallophosphoesterase; 98.9 4.6E-08 1.6E-12 89.9 15.4 130 182-348 8-141 (171)
28 2c95_A Adenylate kinase 1; tra 98.9 7.2E-09 2.5E-13 95.1 9.8 121 182-329 8-130 (196)
29 2bwj_A Adenylate kinase 5; pho 98.8 6.5E-09 2.2E-13 95.6 9.0 122 183-330 12-134 (199)
30 3cm0_A Adenylate kinase; ATP-b 98.8 7.1E-09 2.4E-13 94.7 8.6 120 182-329 3-123 (186)
31 1aky_A Adenylate kinase; ATP:A 98.8 9.1E-09 3.1E-13 97.4 9.1 123 183-329 4-129 (220)
32 2xb4_A Adenylate kinase; ATP-b 98.8 1.3E-08 4.5E-13 97.3 9.4 120 184-329 1-123 (223)
33 3tlx_A Adenylate kinase 2; str 98.8 2.2E-08 7.4E-13 97.4 10.1 124 181-330 27-154 (243)
34 2ze6_A Isopentenyl transferase 98.7 4.5E-08 1.5E-12 96.0 11.4 126 184-330 2-136 (253)
35 2gks_A Bifunctional SAT/APS ki 98.7 3.5E-08 1.2E-12 107.7 11.7 119 182-331 371-489 (546)
36 2pbr_A DTMP kinase, thymidylat 98.7 1.7E-07 5.8E-12 85.4 14.3 141 184-347 1-161 (195)
37 1ukz_A Uridylate kinase; trans 98.7 4.8E-08 1.7E-12 90.8 10.7 125 181-329 13-138 (203)
38 3be4_A Adenylate kinase; malar 98.7 8.1E-08 2.8E-12 91.1 11.7 118 184-329 6-129 (217)
39 3umf_A Adenylate kinase; rossm 98.6 2.1E-07 7.1E-12 90.5 12.1 126 181-331 27-152 (217)
40 2z0h_A DTMP kinase, thymidylat 98.6 2.9E-07 1E-11 84.4 12.3 140 184-347 1-160 (197)
41 2bdt_A BH3686; alpha-beta prot 98.6 5.7E-07 2E-11 82.7 14.2 117 184-331 3-121 (189)
42 3cr8_A Sulfate adenylyltranfer 98.6 3.3E-07 1.1E-11 100.3 14.5 121 182-331 368-488 (552)
43 3sr0_A Adenylate kinase; phosp 98.6 1.4E-07 5E-12 90.5 9.0 120 184-329 1-121 (206)
44 3kb2_A SPBC2 prophage-derived 98.5 3.1E-07 1E-11 82.1 10.3 23 185-207 3-25 (173)
45 2plr_A DTMP kinase, probable t 98.5 6.4E-07 2.2E-11 82.7 11.6 26 182-207 3-28 (213)
46 1nks_A Adenylate kinase; therm 98.5 2.8E-07 9.6E-12 83.7 8.8 41 184-225 2-42 (194)
47 1ak2_A Adenylate kinase isoenz 98.5 1.8E-07 6.2E-12 89.6 7.9 119 183-329 16-140 (233)
48 4eaq_A DTMP kinase, thymidylat 98.5 6.2E-07 2.1E-11 86.8 10.9 122 181-330 24-167 (229)
49 3trf_A Shikimate kinase, SK; a 98.5 4E-07 1.4E-11 83.2 8.9 38 183-226 5-42 (185)
50 1zd8_A GTP:AMP phosphotransfer 98.5 2E-07 6.7E-12 88.8 7.0 40 182-227 6-45 (227)
51 3vaa_A Shikimate kinase, SK; s 98.4 1.3E-07 4.6E-12 88.3 5.3 38 183-226 25-62 (199)
52 1kht_A Adenylate kinase; phosp 98.4 1.6E-07 5.6E-12 85.3 5.7 44 183-227 3-46 (192)
53 2iyv_A Shikimate kinase, SK; t 98.4 2.5E-07 8.4E-12 84.7 6.3 37 185-227 4-40 (184)
54 2wwf_A Thymidilate kinase, put 98.4 1.5E-06 5.3E-11 80.6 10.8 28 182-209 9-36 (212)
55 1nn5_A Similar to deoxythymidy 98.3 1.3E-06 4.5E-11 81.0 9.2 29 181-209 7-35 (215)
56 1e4v_A Adenylate kinase; trans 98.3 1.6E-06 5.3E-11 81.8 9.2 37 185-227 2-38 (214)
57 1e6c_A Shikimate kinase; phosp 98.3 1.4E-06 4.7E-11 78.4 8.4 36 185-226 4-39 (173)
58 1zak_A Adenylate kinase; ATP:A 98.3 1.2E-06 4.2E-11 82.8 7.9 39 182-226 4-42 (222)
59 4edh_A DTMP kinase, thymidylat 98.3 2E-05 7E-10 75.8 16.5 143 182-347 5-175 (213)
60 2pt5_A Shikimate kinase, SK; a 98.3 6.4E-07 2.2E-11 80.4 5.4 36 185-226 2-37 (168)
61 2f6r_A COA synthase, bifunctio 98.3 3E-06 1E-10 84.3 10.3 40 180-226 72-111 (281)
62 2qor_A Guanylate kinase; phosp 98.3 1.4E-07 4.8E-12 88.5 0.5 28 180-207 9-36 (204)
63 2grj_A Dephospho-COA kinase; T 98.2 2.5E-06 8.4E-11 81.0 7.6 41 181-227 10-50 (192)
64 3lv8_A DTMP kinase, thymidylat 98.2 3.8E-05 1.3E-09 75.3 16.0 140 182-347 26-198 (236)
65 1zp6_A Hypothetical protein AT 98.2 1.1E-05 3.6E-10 73.9 11.1 133 182-347 8-146 (191)
66 1uj2_A Uridine-cytidine kinase 98.2 4.2E-06 1.4E-10 81.2 8.7 46 181-226 20-69 (252)
67 3v9p_A DTMP kinase, thymidylat 98.2 9.7E-06 3.3E-10 79.1 11.1 144 181-347 23-195 (227)
68 3iij_A Coilin-interacting nucl 98.1 2.7E-06 9.3E-11 77.6 6.0 39 182-226 10-48 (180)
69 1ex7_A Guanylate kinase; subst 98.1 6.9E-06 2.3E-10 78.0 8.6 67 270-344 81-149 (186)
70 1y63_A LMAJ004144AAA protein; 98.1 1.1E-05 3.7E-10 74.5 9.3 44 178-226 5-48 (184)
71 3hjn_A DTMP kinase, thymidylat 98.0 0.00011 3.8E-09 69.6 15.5 140 184-346 1-159 (197)
72 1via_A Shikimate kinase; struc 98.0 5E-06 1.7E-10 75.6 5.6 36 185-226 6-41 (175)
73 1kag_A SKI, shikimate kinase I 98.0 6.5E-06 2.2E-10 74.1 6.2 37 183-225 4-40 (173)
74 4tmk_A Protein (thymidylate ki 98.0 7.3E-05 2.5E-09 72.0 13.6 143 183-347 3-176 (213)
75 2jaq_A Deoxyguanosine kinase; 97.9 4E-05 1.4E-09 70.1 10.0 23 185-207 2-24 (205)
76 1zuh_A Shikimate kinase; alpha 97.9 1.1E-05 3.6E-10 72.8 5.7 37 184-226 8-44 (168)
77 1vht_A Dephospho-COA kinase; s 97.9 6.2E-05 2.1E-09 70.7 11.1 38 182-226 3-40 (218)
78 3tr0_A Guanylate kinase, GMP k 97.9 6.5E-05 2.2E-09 69.2 10.7 25 182-206 6-30 (205)
79 3tau_A Guanylate kinase, GMP k 97.9 9.1E-07 3.1E-11 83.6 -2.4 26 181-206 6-31 (208)
80 3gmt_A Adenylate kinase; ssgci 97.8 2.8E-05 9.4E-10 76.5 7.9 40 183-228 8-47 (230)
81 2if2_A Dephospho-COA kinase; a 97.8 1.7E-05 6E-10 73.4 5.5 35 185-226 3-37 (204)
82 4hlc_A DTMP kinase, thymidylat 97.8 0.00022 7.7E-09 68.0 13.3 123 184-330 3-143 (205)
83 1kgd_A CASK, peripheral plasma 97.8 1.3E-06 4.3E-11 80.6 -2.5 24 183-206 5-28 (180)
84 3ld9_A DTMP kinase, thymidylat 97.8 0.00016 5.4E-09 70.5 12.0 30 180-209 18-47 (223)
85 1gtv_A TMK, thymidylate kinase 97.8 1.4E-05 4.8E-10 74.2 4.0 25 185-209 2-26 (214)
86 2j41_A Guanylate kinase; GMP, 97.7 0.00015 5E-09 66.8 10.5 25 182-206 5-29 (207)
87 1jjv_A Dephospho-COA kinase; P 97.7 8.7E-05 3E-09 69.0 8.7 36 184-226 3-38 (206)
88 3a00_A Guanylate kinase, GMP k 97.7 6E-05 2.1E-09 69.6 6.6 24 184-207 2-25 (186)
89 3nwj_A ATSK2; P loop, shikimat 97.7 5.7E-05 1.9E-09 74.6 6.8 37 184-226 49-85 (250)
90 3a8t_A Adenylate isopentenyltr 97.6 0.00045 1.5E-08 71.5 12.9 36 182-223 39-74 (339)
91 1s96_A Guanylate kinase, GMP k 97.5 0.00024 8.2E-09 68.5 9.2 60 273-341 100-161 (219)
92 3crm_A TRNA delta(2)-isopenten 97.5 0.00021 7.3E-09 73.4 8.5 36 183-224 5-40 (323)
93 3hdt_A Putative kinase; struct 97.4 0.00077 2.6E-08 65.4 11.1 32 176-207 7-38 (223)
94 4i1u_A Dephospho-COA kinase; s 97.4 0.0007 2.4E-08 65.5 10.7 37 183-226 9-45 (210)
95 3ec2_A DNA replication protein 97.4 0.00032 1.1E-08 63.9 7.6 26 183-208 38-63 (180)
96 3ch4_B Pmkase, phosphomevalona 97.3 0.00082 2.8E-08 64.9 9.7 43 181-226 9-51 (202)
97 3dm5_A SRP54, signal recogniti 97.3 0.00089 3E-08 71.6 10.8 43 182-225 99-141 (443)
98 3t15_A Ribulose bisphosphate c 97.3 0.00039 1.3E-08 69.3 7.3 26 182-207 35-60 (293)
99 1cke_A CK, MSSA, protein (cyti 97.3 0.00012 4E-09 68.7 3.0 38 183-226 5-42 (227)
100 1rz3_A Hypothetical protein rb 97.2 0.00029 9.8E-09 65.9 5.6 45 181-226 20-64 (201)
101 1a7j_A Phosphoribulokinase; tr 97.2 0.00013 4.3E-09 73.2 3.1 43 182-225 4-46 (290)
102 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.0014 5E-08 60.5 9.4 39 183-222 23-61 (235)
103 2dr3_A UPF0273 protein PH0284; 97.2 0.0026 8.9E-08 59.7 11.3 39 183-222 23-61 (247)
104 2qt1_A Nicotinamide riboside k 97.2 0.0002 6.9E-09 66.6 3.6 41 181-226 19-59 (207)
105 2v54_A DTMP kinase, thymidylat 97.1 0.00022 7.6E-09 65.5 3.6 26 182-207 3-28 (204)
106 3c8u_A Fructokinase; YP_612366 97.1 0.00046 1.6E-08 64.7 5.6 44 181-225 20-63 (208)
107 3syl_A Protein CBBX; photosynt 97.1 0.0032 1.1E-07 61.6 11.8 27 183-209 67-93 (309)
108 2zts_A Putative uncharacterize 97.1 0.0026 8.9E-08 59.7 10.7 39 183-221 30-68 (251)
109 3fdi_A Uncharacterized protein 97.1 0.00095 3.2E-08 63.2 7.6 25 183-207 6-30 (201)
110 1odf_A YGR205W, hypothetical 3 97.1 0.0004 1.4E-08 69.8 4.9 47 180-226 28-76 (290)
111 3lnc_A Guanylate kinase, GMP k 97.1 0.0011 3.8E-08 62.8 7.8 25 182-206 26-51 (231)
112 3hr8_A Protein RECA; alpha and 97.0 0.0023 7.9E-08 66.5 10.5 40 182-222 60-99 (356)
113 2cvh_A DNA repair and recombin 97.0 0.0015 5E-08 60.4 7.9 23 183-205 20-42 (220)
114 3h4m_A Proteasome-activating n 97.0 0.0021 7.2E-08 62.3 9.4 24 184-207 52-75 (285)
115 3kl4_A SRP54, signal recogniti 97.0 0.0012 4.3E-08 70.2 8.2 44 181-225 95-138 (433)
116 4a74_A DNA repair and recombin 97.0 0.0012 4.1E-08 61.4 7.2 25 182-206 24-48 (231)
117 2zr9_A Protein RECA, recombina 97.0 0.0036 1.2E-07 64.4 11.3 39 183-222 61-99 (349)
118 3tqc_A Pantothenate kinase; bi 97.0 0.0007 2.4E-08 69.4 5.6 48 180-227 89-137 (321)
119 3asz_A Uridine kinase; cytidin 96.9 0.00066 2.3E-08 63.1 4.9 41 181-225 4-44 (211)
120 2b8t_A Thymidine kinase; deoxy 96.9 0.0028 9.7E-08 61.6 9.5 36 182-218 11-46 (223)
121 3d3q_A TRNA delta(2)-isopenten 96.9 0.00057 1.9E-08 70.7 4.7 35 183-223 7-41 (340)
122 2ehv_A Hypothetical protein PH 96.9 0.002 6.8E-08 60.6 8.1 24 182-205 29-52 (251)
123 3ake_A Cytidylate kinase; CMP 96.9 0.0003 1E-08 64.7 2.4 37 185-227 4-40 (208)
124 1jbk_A CLPB protein; beta barr 96.9 0.0019 6.5E-08 57.1 7.4 26 183-208 43-68 (195)
125 1xp8_A RECA protein, recombina 96.9 0.0046 1.6E-07 64.3 11.2 38 185-223 76-113 (366)
126 1uf9_A TT1252 protein; P-loop, 96.9 0.00056 1.9E-08 62.6 3.9 39 181-226 6-44 (203)
127 1n0w_A DNA repair protein RAD5 96.9 0.0027 9.1E-08 59.6 8.6 24 183-206 24-47 (243)
128 3r20_A Cytidylate kinase; stru 96.9 0.00038 1.3E-08 68.2 2.7 40 181-226 7-46 (233)
129 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0028 9.7E-08 60.2 8.7 26 182-207 38-63 (262)
130 1u94_A RECA protein, recombina 96.8 0.0049 1.7E-07 63.8 10.9 38 184-222 64-101 (356)
131 3ney_A 55 kDa erythrocyte memb 96.8 0.00013 4.4E-09 69.9 -0.9 25 182-206 18-42 (197)
132 2bbw_A Adenylate kinase 4, AK4 96.8 0.00059 2E-08 65.5 3.6 26 182-207 26-51 (246)
133 1cr0_A DNA primase/helicase; R 96.8 0.0077 2.6E-07 59.2 11.6 38 183-220 35-72 (296)
134 3foz_A TRNA delta(2)-isopenten 96.8 0.0032 1.1E-07 64.7 9.1 36 182-223 9-44 (316)
135 3tmk_A Thymidylate kinase; pho 96.8 0.0032 1.1E-07 60.9 8.6 26 182-207 4-29 (216)
136 3exa_A TRNA delta(2)-isopenten 96.8 0.0027 9.3E-08 65.3 8.4 35 183-223 3-37 (322)
137 1g8f_A Sulfate adenylyltransfe 96.8 0.00077 2.6E-08 73.2 4.4 28 182-209 394-421 (511)
138 2chg_A Replication factor C sm 96.7 0.011 3.6E-07 53.5 11.0 22 186-207 41-62 (226)
139 2h92_A Cytidylate kinase; ross 96.7 0.00044 1.5E-08 64.6 1.6 38 183-226 3-40 (219)
140 3aez_A Pantothenate kinase; tr 96.7 0.0016 5.5E-08 66.1 5.7 46 180-225 87-133 (312)
141 4b4t_L 26S protease subunit RP 96.7 0.0028 9.7E-08 67.6 7.7 27 181-207 213-239 (437)
142 1d2n_A N-ethylmaleimide-sensit 96.7 0.0086 2.9E-07 58.0 10.6 27 181-207 62-88 (272)
143 3eph_A TRNA isopentenyltransfe 96.7 0.0048 1.6E-07 65.4 9.3 34 183-222 2-35 (409)
144 1sq5_A Pantothenate kinase; P- 96.7 0.0014 4.8E-08 65.8 5.0 44 181-225 78-123 (308)
145 1q3t_A Cytidylate kinase; nucl 96.7 0.00078 2.7E-08 64.4 3.0 40 181-226 14-53 (236)
146 1l8q_A Chromosomal replication 96.6 0.0039 1.3E-07 62.0 8.0 25 185-209 39-63 (324)
147 4b4t_J 26S protease regulatory 96.6 0.0034 1.1E-07 66.5 7.8 27 181-207 180-206 (405)
148 3lda_A DNA repair protein RAD5 96.6 0.004 1.4E-07 65.5 8.4 24 182-205 177-200 (400)
149 4b4t_M 26S protease regulatory 96.6 0.0027 9.1E-08 67.7 7.1 28 180-207 212-239 (434)
150 4b4t_K 26S protease regulatory 96.6 0.0034 1.2E-07 66.8 7.9 27 181-207 204-230 (428)
151 2z43_A DNA repair and recombin 96.6 0.0036 1.2E-07 63.2 7.6 24 183-206 107-130 (324)
152 1nlf_A Regulatory protein REPA 96.6 0.016 5.4E-07 56.6 11.8 27 182-208 29-55 (279)
153 4b4t_I 26S protease regulatory 96.6 0.0042 1.4E-07 66.3 8.1 27 181-207 214-240 (437)
154 3eie_A Vacuolar protein sortin 96.5 0.0024 8.2E-08 64.0 5.8 25 183-207 51-75 (322)
155 3b9p_A CG5977-PA, isoform A; A 96.5 0.0035 1.2E-07 61.2 6.7 24 183-206 54-77 (297)
156 4b4t_H 26S protease regulatory 96.5 0.0039 1.3E-07 67.1 7.5 27 181-207 241-267 (467)
157 2j37_W Signal recognition part 96.5 0.0094 3.2E-07 64.6 10.5 43 181-224 99-141 (504)
158 1v5w_A DMC1, meiotic recombina 96.5 0.01 3.4E-07 60.6 10.1 26 181-206 120-145 (343)
159 3io5_A Recombination and repai 96.5 0.01 3.5E-07 61.3 10.0 26 185-210 30-55 (333)
160 2ocp_A DGK, deoxyguanosine kin 96.4 0.0015 5E-08 62.5 3.3 25 183-207 2-26 (241)
161 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0036 1.2E-07 63.2 6.2 24 183-206 45-68 (322)
162 3d8b_A Fidgetin-like protein 1 96.4 0.0055 1.9E-07 62.5 7.4 24 183-206 117-140 (357)
163 3bh0_A DNAB-like replicative h 96.4 0.011 3.7E-07 59.5 9.5 29 182-210 67-95 (315)
164 2i1q_A DNA repair and recombin 96.3 0.0094 3.2E-07 59.6 8.8 25 182-206 97-121 (322)
165 1vma_A Cell division protein F 96.3 0.0044 1.5E-07 62.8 6.4 43 180-223 101-143 (306)
166 2qp9_X Vacuolar protein sortin 96.3 0.0032 1.1E-07 64.4 5.3 24 184-207 85-108 (355)
167 4a1f_A DNAB helicase, replicat 96.3 0.027 9.1E-07 58.1 12.1 115 184-316 47-163 (338)
168 2q6t_A DNAB replication FORK h 96.3 0.031 1E-06 58.8 12.8 117 183-316 200-317 (444)
169 1p5z_B DCK, deoxycytidine kina 96.3 0.00082 2.8E-08 65.3 0.6 27 181-207 22-48 (263)
170 4e22_A Cytidylate kinase; P-lo 96.3 0.002 6.7E-08 62.7 3.2 37 182-224 26-62 (252)
171 1pzn_A RAD51, DNA repair and r 96.2 0.012 4.1E-07 60.3 9.0 26 181-206 129-154 (349)
172 3bos_A Putative DNA replicatio 96.2 0.0046 1.6E-07 57.2 5.1 27 184-210 53-79 (242)
173 2r6a_A DNAB helicase, replicat 96.2 0.027 9.3E-07 59.4 11.5 39 183-221 203-241 (454)
174 2x8a_A Nuclear valosin-contain 96.1 0.01 3.6E-07 58.6 7.8 21 186-206 47-67 (274)
175 2jeo_A Uridine-cytidine kinase 96.1 0.0038 1.3E-07 60.0 4.3 27 181-207 23-49 (245)
176 2xxa_A Signal recognition part 96.0 0.032 1.1E-06 59.2 11.3 44 181-224 98-141 (433)
177 1lvg_A Guanylate kinase, GMP k 96.0 0.0027 9.3E-08 59.4 2.8 25 183-207 4-28 (198)
178 3b9q_A Chloroplast SRP recepto 96.0 0.0089 3E-07 60.3 6.8 41 180-221 97-137 (302)
179 3pvs_A Replication-associated 96.0 0.02 6.9E-07 60.8 9.8 22 185-206 52-73 (447)
180 3vfd_A Spastin; ATPase, microt 96.0 0.0082 2.8E-07 61.7 6.6 24 183-206 148-171 (389)
181 3e70_C DPA, signal recognition 96.0 0.007 2.4E-07 61.9 5.8 40 181-221 127-166 (328)
182 2px0_A Flagellar biosynthesis 96.0 0.006 2E-07 61.3 5.2 42 182-223 104-145 (296)
183 1lv7_A FTSH; alpha/beta domain 96.0 0.0057 2E-07 58.6 4.8 23 185-207 47-69 (257)
184 3jvv_A Twitching mobility prot 95.9 0.066 2.3E-06 55.3 13.0 28 183-210 123-150 (356)
185 2yhs_A FTSY, cell division pro 95.9 0.0083 2.8E-07 65.1 6.2 44 178-222 288-331 (503)
186 2og2_A Putative signal recogni 95.9 0.011 3.7E-07 61.5 6.7 41 180-221 154-194 (359)
187 2z4s_A Chromosomal replication 95.9 0.011 3.8E-07 62.3 6.9 25 185-209 132-156 (440)
188 3bgw_A DNAB-like replicative h 95.8 0.057 1.9E-06 57.2 12.3 38 183-221 197-234 (444)
189 1ye8_A Protein THEP1, hypothet 95.8 0.0045 1.5E-07 57.5 3.4 23 185-207 2-24 (178)
190 1xjc_A MOBB protein homolog; s 95.8 0.0091 3.1E-07 55.8 5.4 28 184-211 5-32 (169)
191 2p65_A Hypothetical protein PF 95.8 0.0036 1.2E-07 55.4 2.5 26 183-208 43-68 (187)
192 1svi_A GTP-binding protein YSX 95.8 0.039 1.3E-06 49.5 9.2 35 285-319 110-144 (195)
193 2w58_A DNAI, primosome compone 95.8 0.0066 2.3E-07 55.8 4.1 27 184-210 55-81 (202)
194 2ce7_A Cell division protein F 95.7 0.017 6E-07 62.0 7.9 22 186-207 52-73 (476)
195 2kjq_A DNAA-related protein; s 95.7 0.0076 2.6E-07 54.3 4.4 27 183-209 36-62 (149)
196 1rj9_A FTSY, signal recognitio 95.7 0.0093 3.2E-07 60.3 5.2 39 182-221 101-139 (304)
197 1q57_A DNA primase/helicase; d 95.7 0.035 1.2E-06 59.1 9.9 40 182-221 241-280 (503)
198 1njg_A DNA polymerase III subu 95.7 0.0066 2.3E-07 55.3 3.7 24 185-208 47-70 (250)
199 2ffh_A Protein (FFH); SRP54, s 95.6 0.084 2.9E-06 56.0 12.3 40 182-222 97-136 (425)
200 1znw_A Guanylate kinase, GMP k 95.6 0.0059 2E-07 57.0 3.1 26 182-207 19-44 (207)
201 2qmh_A HPR kinase/phosphorylas 95.6 0.0084 2.9E-07 58.1 4.2 36 183-225 34-69 (205)
202 1zu4_A FTSY; GTPase, signal re 95.6 0.015 5.3E-07 59.1 6.4 42 180-222 102-143 (320)
203 1ofh_A ATP-dependent HSL prote 95.6 0.0093 3.2E-07 57.8 4.5 24 184-207 51-74 (310)
204 1z6g_A Guanylate kinase; struc 95.5 0.0062 2.1E-07 57.8 2.8 25 183-207 23-47 (218)
205 1yrb_A ATP(GTP)binding protein 95.5 0.014 4.7E-07 55.7 5.3 39 181-221 12-50 (262)
206 3cmw_A Protein RECA, recombina 95.4 0.035 1.2E-06 68.0 9.9 41 184-225 733-773 (1706)
207 2www_A Methylmalonic aciduria 95.4 0.016 5.6E-07 59.2 6.0 40 181-221 72-111 (349)
208 2r2a_A Uncharacterized protein 95.4 0.01 3.5E-07 56.5 4.1 42 183-224 5-51 (199)
209 2zan_A Vacuolar protein sortin 95.4 0.014 4.9E-07 61.5 5.5 24 183-206 167-190 (444)
210 1ixz_A ATP-dependent metallopr 95.4 0.008 2.8E-07 57.5 3.3 22 186-207 52-73 (254)
211 2v3c_C SRP54, signal recogniti 95.4 0.0098 3.3E-07 63.1 4.2 43 181-224 97-139 (432)
212 3u61_B DNA polymerase accessor 95.3 0.021 7.1E-07 56.5 6.3 25 183-207 48-72 (324)
213 1np6_A Molybdopterin-guanine d 95.3 0.014 4.7E-07 54.4 4.6 28 183-210 6-33 (174)
214 3p32_A Probable GTPase RV1496/ 95.3 0.018 6.1E-07 58.8 5.7 40 181-221 77-116 (355)
215 3n70_A Transport activator; si 95.2 0.0095 3.2E-07 52.7 3.1 21 186-206 27-47 (145)
216 3cmw_A Protein RECA, recombina 95.2 0.055 1.9E-06 66.3 10.6 38 185-223 385-422 (1706)
217 1in4_A RUVB, holliday junction 95.2 0.01 3.5E-07 59.9 3.5 24 184-207 52-75 (334)
218 2eyu_A Twitching motility prot 95.1 0.02 6.7E-07 56.5 5.3 28 182-209 24-51 (261)
219 3cf2_A TER ATPase, transitiona 95.1 0.019 6.4E-07 65.6 5.7 35 172-206 224-261 (806)
220 3cmu_A Protein RECA, recombina 95.1 0.066 2.3E-06 66.5 10.7 89 183-292 1427-1515(2050)
221 3cf0_A Transitional endoplasmi 95.0 0.011 3.8E-07 58.7 3.2 25 183-207 49-73 (301)
222 1tue_A Replication protein E1; 95.0 0.0092 3.2E-07 58.0 2.5 27 181-207 56-82 (212)
223 1iy2_A ATP-dependent metallopr 95.0 0.012 4.1E-07 57.4 3.3 22 186-207 76-97 (278)
224 1tf7_A KAIC; homohexamer, hexa 94.9 0.038 1.3E-06 59.4 7.3 29 182-210 280-308 (525)
225 2qm8_A GTPase/ATPase; G protei 94.9 0.026 8.9E-07 57.6 5.7 38 181-219 53-90 (337)
226 3iev_A GTP-binding protein ERA 94.9 0.16 5.4E-06 50.8 11.2 25 181-205 8-32 (308)
227 2vp4_A Deoxynucleoside kinase; 94.8 0.011 3.8E-07 56.3 2.6 27 180-206 17-43 (230)
228 4fcw_A Chaperone protein CLPB; 94.8 0.02 6.8E-07 55.8 4.3 26 183-208 47-72 (311)
229 3cmu_A Protein RECA, recombina 94.8 0.075 2.6E-06 66.1 10.2 37 185-222 385-421 (2050)
230 2r62_A Cell division protease 94.8 0.008 2.7E-07 57.8 1.4 22 186-207 47-68 (268)
231 1htw_A HI0065; nucleotide-bind 94.8 0.018 6.3E-07 52.6 3.7 27 181-207 31-57 (158)
232 1ls1_A Signal recognition part 94.8 0.034 1.2E-06 55.6 5.9 39 182-221 97-135 (295)
233 1wf3_A GTP-binding protein; GT 94.7 0.18 6E-06 50.5 11.1 22 184-205 8-29 (301)
234 2f1r_A Molybdopterin-guanine d 94.7 0.018 6.1E-07 53.5 3.5 26 185-210 4-29 (171)
235 1j8m_F SRP54, signal recogniti 94.6 0.027 9.4E-07 56.6 5.0 39 183-222 98-136 (297)
236 3hws_A ATP-dependent CLP prote 94.6 0.015 5E-07 59.1 2.9 25 183-207 51-75 (363)
237 3tqf_A HPR(Ser) kinase; transf 94.6 0.027 9.2E-07 53.6 4.5 24 183-206 16-39 (181)
238 3uk6_A RUVB-like 2; hexameric 94.6 0.018 6E-07 57.7 3.4 24 184-207 71-94 (368)
239 2v9p_A Replication protein E1; 94.6 0.017 6E-07 58.6 3.4 27 181-207 124-150 (305)
240 1um8_A ATP-dependent CLP prote 94.6 0.022 7.4E-07 58.0 4.1 24 184-207 73-96 (376)
241 2orw_A Thymidine kinase; TMTK, 94.6 0.028 9.4E-07 52.4 4.4 28 184-211 4-31 (184)
242 2i3b_A HCR-ntpase, human cance 94.5 0.018 6.1E-07 54.2 3.1 24 185-208 3-26 (189)
243 2ewv_A Twitching motility prot 94.5 0.031 1.1E-06 57.8 5.2 30 180-209 133-162 (372)
244 1svm_A Large T antigen; AAA+ f 94.5 0.021 7E-07 59.7 3.7 27 181-207 167-193 (377)
245 1sxj_A Activator 1 95 kDa subu 94.5 0.028 9.7E-07 60.2 4.9 25 183-207 77-101 (516)
246 3co5_A Putative two-component 94.5 0.011 3.7E-07 52.3 1.3 20 186-205 30-49 (143)
247 2qgz_A Helicase loader, putati 94.4 0.02 6.9E-07 57.5 3.4 28 184-211 153-181 (308)
248 1g41_A Heat shock protein HSLU 94.4 0.023 7.8E-07 60.7 4.0 24 184-207 51-74 (444)
249 2ga8_A Hypothetical 39.9 kDa p 94.4 0.029 9.8E-07 58.5 4.6 26 183-208 24-49 (359)
250 2p67_A LAO/AO transport system 94.4 0.04 1.4E-06 56.0 5.6 40 181-221 54-93 (341)
251 2wsm_A Hydrogenase expression/ 94.3 0.029 1E-06 51.8 4.1 26 182-207 29-54 (221)
252 2wjg_A FEOB, ferrous iron tran 94.3 0.03 1E-06 49.9 4.0 24 182-205 6-29 (188)
253 3hu3_A Transitional endoplasmi 94.3 0.037 1.3E-06 59.5 5.4 24 183-206 238-261 (489)
254 1c9k_A COBU, adenosylcobinamid 94.3 0.018 6.1E-07 54.4 2.6 21 185-205 1-21 (180)
255 3czq_A Putative polyphosphate 94.3 0.035 1.2E-06 56.7 4.8 26 182-207 85-110 (304)
256 2c9o_A RUVB-like 1; hexameric 94.3 0.031 1.1E-06 58.9 4.5 24 184-207 64-87 (456)
257 1sxj_D Activator 1 41 kDa subu 94.2 0.024 8.3E-07 56.0 3.5 22 186-207 61-82 (353)
258 3tif_A Uncharacterized ABC tra 94.2 0.019 6.6E-07 55.5 2.7 25 182-206 30-54 (235)
259 1oix_A RAS-related protein RAB 94.2 0.026 8.8E-07 51.6 3.4 23 183-205 29-51 (191)
260 2v1u_A Cell division control p 94.2 0.023 7.7E-07 56.5 3.1 27 182-208 43-69 (387)
261 1pui_A ENGB, probable GTP-bind 94.2 0.019 6.5E-07 52.5 2.4 26 180-205 23-48 (210)
262 2qby_A CDC6 homolog 1, cell di 94.1 0.025 8.4E-07 56.1 3.2 28 182-209 44-71 (386)
263 2wji_A Ferrous iron transport 94.1 0.031 1.1E-06 49.5 3.5 23 183-205 3-25 (165)
264 1ypw_A Transitional endoplasmi 94.1 0.04 1.4E-06 62.6 5.3 26 181-206 236-261 (806)
265 1sxj_C Activator 1 40 kDa subu 94.1 0.027 9.1E-07 56.5 3.4 23 186-208 49-71 (340)
266 1fnn_A CDC6P, cell division co 94.1 0.029 1E-06 56.0 3.7 23 185-207 46-68 (389)
267 3pfi_A Holliday junction ATP-d 94.0 0.026 9E-07 56.0 3.3 22 185-206 57-78 (338)
268 2ged_A SR-beta, signal recogni 94.0 0.031 1E-06 50.2 3.4 25 181-205 46-70 (193)
269 2ce2_X GTPase HRAS; signaling 94.0 0.035 1.2E-06 47.6 3.6 22 184-205 4-25 (166)
270 2pcj_A ABC transporter, lipopr 94.0 0.022 7.5E-07 54.6 2.6 24 183-206 30-53 (224)
271 2qby_B CDC6 homolog 3, cell di 94.0 0.031 1E-06 56.0 3.6 26 183-208 45-70 (384)
272 2hf9_A Probable hydrogenase ni 94.0 0.04 1.4E-06 51.1 4.2 26 182-207 37-62 (226)
273 2cbz_A Multidrug resistance-as 93.9 0.024 8.2E-07 54.9 2.7 24 183-206 31-54 (237)
274 3con_A GTPase NRAS; structural 93.9 0.03 1E-06 50.1 3.2 24 182-205 20-43 (190)
275 2lkc_A Translation initiation 93.9 0.041 1.4E-06 48.4 4.0 25 181-205 6-30 (178)
276 1hqc_A RUVB; extended AAA-ATPa 93.9 0.034 1.2E-06 54.5 3.7 24 184-207 39-62 (324)
277 1z2a_A RAS-related protein RAB 93.9 0.036 1.2E-06 48.0 3.5 24 182-205 4-27 (168)
278 2r44_A Uncharacterized protein 93.9 0.025 8.7E-07 56.1 2.7 23 185-207 48-70 (331)
279 2dyk_A GTP-binding protein; GT 93.8 0.031 1E-06 48.2 2.9 35 285-319 84-118 (161)
280 1mv5_A LMRA, multidrug resista 93.8 0.031 1E-06 54.2 3.3 25 182-206 27-51 (243)
281 1kao_A RAP2A; GTP-binding prot 93.8 0.038 1.3E-06 47.5 3.5 23 183-205 3-25 (167)
282 2onk_A Molybdate/tungstate ABC 93.8 0.03 1E-06 54.5 3.2 23 184-206 25-47 (240)
283 2bjv_A PSP operon transcriptio 93.8 0.03 1E-06 53.8 3.1 22 185-206 31-52 (265)
284 2erx_A GTP-binding protein DI- 93.8 0.038 1.3E-06 47.9 3.5 23 183-205 3-25 (172)
285 2f9l_A RAB11B, member RAS onco 93.8 0.036 1.2E-06 50.6 3.4 23 183-205 5-27 (199)
286 2hxs_A RAB-26, RAS-related pro 93.7 0.046 1.6E-06 48.0 4.0 25 181-205 4-28 (178)
287 1g8p_A Magnesium-chelatase 38 93.7 0.019 6.4E-07 56.9 1.5 22 186-207 48-69 (350)
288 1u8z_A RAS-related protein RAL 93.7 0.046 1.6E-06 47.1 3.8 23 183-205 4-26 (168)
289 1dek_A Deoxynucleoside monopho 93.7 0.037 1.3E-06 54.3 3.6 37 184-226 2-38 (241)
290 3b85_A Phosphate starvation-in 93.7 0.026 8.8E-07 53.9 2.3 28 184-212 23-50 (208)
291 1ek0_A Protein (GTP-binding pr 93.7 0.034 1.2E-06 48.1 2.9 22 184-205 4-25 (170)
292 2gj8_A MNME, tRNA modification 93.7 0.04 1.4E-06 49.4 3.5 23 183-205 4-26 (172)
293 4g1u_C Hemin import ATP-bindin 93.7 0.028 9.6E-07 55.6 2.6 25 182-206 36-60 (266)
294 1sxj_E Activator 1 40 kDa subu 93.6 0.031 1.1E-06 55.6 2.9 63 283-345 135-205 (354)
295 2d2e_A SUFC protein; ABC-ATPas 93.6 0.035 1.2E-06 54.1 3.2 23 183-205 29-51 (250)
296 1iqp_A RFCS; clamp loader, ext 93.6 0.038 1.3E-06 53.7 3.5 22 186-207 49-70 (327)
297 1g16_A RAS-related protein SEC 93.6 0.036 1.2E-06 48.1 2.9 22 184-205 4-25 (170)
298 1qvr_A CLPB protein; coiled co 93.6 0.17 5.7E-06 57.6 9.1 25 185-209 193-217 (854)
299 1jr3_A DNA polymerase III subu 93.6 0.041 1.4E-06 54.8 3.7 64 281-345 118-190 (373)
300 3q85_A GTP-binding protein REM 93.6 0.037 1.3E-06 48.3 2.9 21 184-204 3-23 (169)
301 3q72_A GTP-binding protein RAD 93.5 0.034 1.2E-06 48.3 2.7 20 185-204 4-23 (166)
302 3kta_A Chromosome segregation 93.5 0.038 1.3E-06 49.8 3.1 23 185-207 28-50 (182)
303 1upt_A ARL1, ADP-ribosylation 93.5 0.054 1.9E-06 47.1 4.0 25 181-205 5-29 (171)
304 2nzj_A GTP-binding protein REM 93.5 0.048 1.6E-06 47.6 3.7 23 183-205 4-26 (175)
305 1lw7_A Transcriptional regulat 93.5 0.045 1.5E-06 55.8 3.9 25 183-207 170-194 (365)
306 3gfo_A Cobalt import ATP-bindi 93.5 0.031 1.1E-06 55.7 2.7 24 183-206 34-57 (275)
307 1z0j_A RAB-22, RAS-related pro 93.5 0.038 1.3E-06 48.0 2.9 23 183-205 6-28 (170)
308 3clv_A RAB5 protein, putative; 93.5 0.06 2.1E-06 47.7 4.3 24 182-205 6-29 (208)
309 3pqc_A Probable GTP-binding pr 93.5 0.055 1.9E-06 48.1 4.1 25 181-205 21-45 (195)
310 1g6h_A High-affinity branched- 93.5 0.032 1.1E-06 54.7 2.7 25 182-206 32-56 (257)
311 2ff7_A Alpha-hemolysin translo 93.5 0.032 1.1E-06 54.5 2.7 24 183-206 35-58 (247)
312 1b0u_A Histidine permease; ABC 93.5 0.032 1.1E-06 55.0 2.7 25 182-206 31-55 (262)
313 1ky3_A GTP-binding protein YPT 93.5 0.046 1.6E-06 47.9 3.5 24 182-205 7-30 (182)
314 2zu0_C Probable ATP-dependent 93.5 0.037 1.3E-06 54.6 3.2 24 182-205 45-68 (267)
315 1wms_A RAB-9, RAB9, RAS-relate 93.5 0.038 1.3E-06 48.5 2.9 23 183-205 7-29 (177)
316 1c1y_A RAS-related protein RAP 93.5 0.048 1.6E-06 47.2 3.5 23 183-205 3-25 (167)
317 1r2q_A RAS-related protein RAB 93.5 0.039 1.3E-06 47.8 2.9 23 183-205 6-28 (170)
318 1ji0_A ABC transporter; ATP bi 93.5 0.032 1.1E-06 54.0 2.7 24 183-206 32-55 (240)
319 1u0j_A DNA replication protein 93.4 0.04 1.4E-06 55.2 3.4 26 181-206 102-127 (267)
320 3bc1_A RAS-related protein RAB 93.4 0.039 1.3E-06 48.8 2.9 23 183-205 11-33 (195)
321 2pze_A Cystic fibrosis transme 93.4 0.034 1.2E-06 53.5 2.7 24 183-206 34-57 (229)
322 1z0f_A RAB14, member RAS oncog 93.4 0.043 1.5E-06 48.0 3.1 24 182-205 14-37 (179)
323 2ixe_A Antigen peptide transpo 93.4 0.033 1.1E-06 55.1 2.7 24 183-206 45-68 (271)
324 3m6a_A ATP-dependent protease 93.4 0.042 1.4E-06 59.6 3.6 26 182-207 107-132 (543)
325 1z08_A RAS-related protein RAB 93.4 0.041 1.4E-06 47.9 2.9 24 182-205 5-28 (170)
326 2fn4_A P23, RAS-related protei 93.4 0.056 1.9E-06 47.4 3.8 24 182-205 8-31 (181)
327 1zd9_A ADP-ribosylation factor 93.4 0.045 1.6E-06 49.3 3.3 25 181-205 20-44 (188)
328 2ghi_A Transport protein; mult 93.3 0.034 1.2E-06 54.6 2.7 25 182-206 45-69 (260)
329 2olj_A Amino acid ABC transpor 93.3 0.035 1.2E-06 54.9 2.7 25 182-206 49-73 (263)
330 2chq_A Replication factor C sm 93.3 0.045 1.5E-06 53.1 3.4 22 186-207 41-62 (319)
331 2zej_A Dardarin, leucine-rich 93.3 0.04 1.4E-06 49.7 2.8 22 184-205 3-24 (184)
332 2dhr_A FTSH; AAA+ protein, hex 93.2 0.051 1.8E-06 58.7 4.0 21 186-206 67-87 (499)
333 2a9k_A RAS-related protein RAL 93.2 0.045 1.5E-06 48.2 2.9 24 182-205 17-40 (187)
334 2yz2_A Putative ABC transporte 93.2 0.038 1.3E-06 54.4 2.7 24 183-206 33-56 (266)
335 3tw8_B RAS-related protein RAB 93.2 0.043 1.5E-06 48.1 2.7 23 182-204 8-30 (181)
336 1sgw_A Putative ABC transporte 93.1 0.033 1.1E-06 53.5 2.1 23 184-206 36-58 (214)
337 4dcu_A GTP-binding protein ENG 93.1 0.13 4.5E-06 54.1 6.9 46 274-319 96-141 (456)
338 1p9r_A General secretion pathw 93.1 0.049 1.7E-06 57.5 3.6 26 182-207 166-191 (418)
339 1vpl_A ABC transporter, ATP-bi 93.1 0.04 1.4E-06 54.3 2.7 25 182-206 40-64 (256)
340 2y8e_A RAB-protein 6, GH09086P 93.1 0.048 1.6E-06 47.7 2.9 23 183-205 14-36 (179)
341 2efe_B Small GTP-binding prote 93.1 0.048 1.6E-06 48.1 2.9 24 182-205 11-34 (181)
342 3bwd_D RAC-like GTP-binding pr 93.0 0.054 1.9E-06 47.7 3.3 25 181-205 6-30 (182)
343 2qi9_C Vitamin B12 import ATP- 93.0 0.041 1.4E-06 53.9 2.7 24 183-206 26-49 (249)
344 1moz_A ARL1, ADP-ribosylation 93.0 0.049 1.7E-06 48.2 3.0 24 181-204 16-39 (183)
345 3sop_A Neuronal-specific septi 93.0 0.051 1.7E-06 53.8 3.3 24 184-207 3-26 (270)
346 3tvt_A Disks large 1 tumor sup 93.0 0.19 6.6E-06 50.6 7.6 65 270-344 178-242 (292)
347 2cxx_A Probable GTP-binding pr 93.0 0.049 1.7E-06 48.4 2.9 21 185-205 3-23 (190)
348 2ihy_A ABC transporter, ATP-bi 93.0 0.042 1.4E-06 54.8 2.7 25 182-206 46-70 (279)
349 2g6b_A RAS-related protein RAB 93.0 0.051 1.7E-06 47.8 2.9 24 182-205 9-32 (180)
350 2bme_A RAB4A, RAS-related prot 93.0 0.05 1.7E-06 48.3 2.9 23 183-205 10-32 (186)
351 1nrj_B SR-beta, signal recogni 93.0 0.057 2E-06 49.6 3.4 24 182-205 11-34 (218)
352 3t5g_A GTP-binding protein RHE 92.9 0.05 1.7E-06 48.2 2.9 24 182-205 5-28 (181)
353 2oil_A CATX-8, RAS-related pro 92.9 0.053 1.8E-06 48.7 3.1 24 182-205 24-47 (193)
354 1r8s_A ADP-ribosylation factor 92.9 0.052 1.8E-06 47.0 2.9 20 186-205 3-22 (164)
355 1sxj_B Activator 1 37 kDa subu 92.9 0.056 1.9E-06 52.4 3.5 22 186-207 45-66 (323)
356 4dsu_A GTPase KRAS, isoform 2B 92.9 0.056 1.9E-06 47.8 3.2 24 182-205 3-26 (189)
357 3kkq_A RAS-related protein M-R 92.9 0.075 2.6E-06 47.1 4.0 25 181-205 16-40 (183)
358 2bov_A RAla, RAS-related prote 92.9 0.07 2.4E-06 48.1 3.8 25 181-205 12-36 (206)
359 1zj6_A ADP-ribosylation factor 92.9 0.07 2.4E-06 47.8 3.8 26 180-205 13-38 (187)
360 2r8r_A Sensor protein; KDPD, P 92.8 0.14 4.9E-06 50.1 6.2 40 182-222 5-44 (228)
361 1nij_A Hypothetical protein YJ 92.8 0.051 1.7E-06 54.7 3.0 24 183-206 4-27 (318)
362 2gza_A Type IV secretion syste 92.8 0.041 1.4E-06 56.6 2.3 24 184-207 176-199 (361)
363 3ihw_A Centg3; RAS, centaurin, 92.7 0.083 2.8E-06 47.8 4.1 26 180-205 17-42 (184)
364 2nq2_C Hypothetical ABC transp 92.7 0.048 1.6E-06 53.5 2.6 24 183-206 31-54 (253)
365 3t1o_A Gliding protein MGLA; G 92.7 0.062 2.1E-06 47.8 3.1 25 182-206 13-37 (198)
366 3te6_A Regulatory protein SIR3 92.6 0.059 2E-06 55.1 3.3 28 182-209 44-71 (318)
367 1zbd_A Rabphilin-3A; G protein 92.6 0.06 2E-06 48.8 2.9 23 183-205 8-30 (203)
368 2b6h_A ADP-ribosylation factor 92.6 0.082 2.8E-06 48.1 3.9 24 181-204 27-50 (192)
369 3upu_A ATP-dependent DNA helic 92.6 0.11 3.7E-06 54.7 5.3 27 185-211 47-73 (459)
370 1x3s_A RAS-related protein RAB 92.6 0.065 2.2E-06 47.8 3.1 23 183-205 15-37 (195)
371 1ksh_A ARF-like protein 2; sma 92.6 0.075 2.6E-06 47.4 3.5 25 181-205 16-40 (186)
372 3tkl_A RAS-related protein RAB 92.5 0.062 2.1E-06 48.1 2.9 23 183-205 16-38 (196)
373 2pjz_A Hypothetical protein ST 92.5 0.052 1.8E-06 53.6 2.7 24 183-206 30-53 (263)
374 1mh1_A RAC1; GTP-binding, GTPa 92.5 0.072 2.5E-06 47.0 3.3 24 182-205 4-27 (186)
375 2gno_A DNA polymerase III, gam 92.5 0.39 1.3E-05 48.3 9.1 62 281-344 81-150 (305)
376 2c78_A Elongation factor TU-A; 92.5 0.95 3.3E-05 46.7 12.2 29 182-210 10-38 (405)
377 2vhj_A Ntpase P4, P4; non- hyd 92.4 0.055 1.9E-06 55.8 2.8 24 183-206 123-146 (331)
378 3nh6_A ATP-binding cassette SU 92.4 0.05 1.7E-06 55.1 2.4 24 183-206 80-103 (306)
379 2h17_A ADP-ribosylation factor 92.4 0.074 2.5E-06 47.5 3.3 25 181-205 19-43 (181)
380 2gf9_A RAS-related protein RAB 92.4 0.066 2.2E-06 48.1 2.9 23 183-205 22-44 (189)
381 2gf0_A GTP-binding protein DI- 92.4 0.097 3.3E-06 46.9 4.1 24 182-205 7-30 (199)
382 1m7b_A RND3/RHOE small GTP-bin 92.4 0.086 2.9E-06 47.2 3.6 24 182-205 6-29 (184)
383 2atv_A RERG, RAS-like estrogen 92.3 0.092 3.2E-06 47.5 3.8 25 181-205 26-50 (196)
384 3dz8_A RAS-related protein RAB 92.3 0.068 2.3E-06 48.2 2.9 24 183-206 23-46 (191)
385 3fvq_A Fe(3+) IONS import ATP- 92.3 0.066 2.2E-06 55.6 3.1 25 182-206 29-53 (359)
386 3oes_A GTPase rhebl1; small GT 92.2 0.069 2.3E-06 48.7 2.9 24 182-205 23-46 (201)
387 3tr5_A RF-3, peptide chain rel 92.2 0.48 1.7E-05 51.3 9.9 35 285-319 110-144 (528)
388 2fg5_A RAB-22B, RAS-related pr 92.1 0.072 2.5E-06 48.2 2.9 24 182-205 22-45 (192)
389 3cf2_A TER ATPase, transitiona 92.1 0.049 1.7E-06 62.3 2.1 24 183-206 511-534 (806)
390 2fna_A Conserved hypothetical 92.1 0.087 3E-06 51.5 3.7 23 185-207 32-54 (357)
391 1fzq_A ADP-ribosylation factor 92.1 0.095 3.2E-06 47.1 3.6 23 182-204 15-37 (181)
392 3lxx_A GTPase IMAP family memb 92.1 0.087 3E-06 49.9 3.5 25 181-205 27-51 (239)
393 2a5j_A RAS-related protein RAB 92.1 0.08 2.7E-06 47.7 3.1 24 182-205 20-43 (191)
394 1ojl_A Transcriptional regulat 92.1 0.085 2.9E-06 52.7 3.6 22 185-206 27-48 (304)
395 3pxg_A Negative regulator of g 92.0 0.074 2.5E-06 56.4 3.3 24 185-208 203-226 (468)
396 1z06_A RAS-related protein RAB 92.0 0.095 3.2E-06 47.0 3.5 24 182-205 19-42 (189)
397 3reg_A RHO-like small GTPase; 92.0 0.082 2.8E-06 47.6 3.1 25 181-205 21-45 (194)
398 1vg8_A RAS-related protein RAB 92.0 0.094 3.2E-06 47.4 3.5 24 182-205 7-30 (207)
399 1m2o_B GTP-binding protein SAR 92.0 0.076 2.6E-06 48.2 2.9 23 183-205 23-45 (190)
400 1w5s_A Origin recognition comp 92.0 0.083 2.8E-06 53.2 3.4 26 183-208 50-77 (412)
401 2qen_A Walker-type ATPase; unk 92.0 0.088 3E-06 51.4 3.5 22 185-206 33-54 (350)
402 4gzl_A RAS-related C3 botulinu 91.9 0.094 3.2E-06 48.2 3.5 25 181-205 28-52 (204)
403 2yyz_A Sugar ABC transporter, 91.9 0.079 2.7E-06 55.0 3.2 25 182-206 28-52 (359)
404 3cph_A RAS-related protein SEC 91.9 0.081 2.8E-06 48.1 2.9 25 181-205 18-42 (213)
405 1xx6_A Thymidine kinase; NESG, 91.9 0.21 7.3E-06 47.1 5.9 36 182-218 7-42 (191)
406 2iwr_A Centaurin gamma 1; ANK 91.9 0.095 3.3E-06 46.2 3.3 24 182-205 6-29 (178)
407 1z47_A CYSA, putative ABC-tran 91.9 0.079 2.7E-06 54.9 3.2 24 183-206 41-64 (355)
408 2o52_A RAS-related protein RAB 91.9 0.08 2.7E-06 48.4 2.9 24 182-205 24-47 (200)
409 3tui_C Methionine import ATP-b 91.9 0.08 2.7E-06 55.2 3.2 25 182-206 53-77 (366)
410 2bbs_A Cystic fibrosis transme 91.8 0.069 2.4E-06 53.6 2.6 25 182-206 63-87 (290)
411 3rlf_A Maltose/maltodextrin im 91.8 0.08 2.7E-06 55.4 3.2 25 182-206 28-52 (381)
412 2pt7_A CAG-ALFA; ATPase, prote 91.8 0.052 1.8E-06 55.2 1.7 23 185-207 173-195 (330)
413 1f6b_A SAR1; gtpases, N-termin 91.8 0.11 3.6E-06 47.7 3.7 22 183-204 25-46 (198)
414 3c5c_A RAS-like protein 12; GD 91.8 0.11 3.7E-06 47.0 3.7 25 181-205 19-43 (187)
415 2f7s_A C25KG, RAS-related prot 91.8 0.083 2.9E-06 48.5 2.9 23 183-205 25-47 (217)
416 2it1_A 362AA long hypothetical 91.8 0.083 2.8E-06 54.9 3.2 24 183-206 29-52 (362)
417 2bcg_Y Protein YP2, GTP-bindin 91.8 0.084 2.9E-06 48.1 2.9 23 183-205 8-30 (206)
418 2ew1_A RAS-related protein RAB 91.7 0.089 3E-06 48.7 3.1 23 183-205 26-48 (201)
419 2h57_A ADP-ribosylation factor 91.7 0.082 2.8E-06 47.5 2.8 24 182-205 20-43 (190)
420 2fu5_C RAS-related protein RAB 91.7 0.054 1.9E-06 48.0 1.5 23 183-205 8-30 (183)
421 3d31_A Sulfate/molybdate ABC t 91.7 0.072 2.5E-06 55.0 2.6 24 183-206 26-49 (348)
422 2p5s_A RAS and EF-hand domain 91.7 0.11 3.6E-06 47.3 3.5 25 181-205 26-50 (199)
423 2il1_A RAB12; G-protein, GDP, 91.7 0.084 2.9E-06 47.8 2.8 23 183-205 26-48 (192)
424 2hjg_A GTP-binding protein ENG 91.7 0.34 1.2E-05 50.6 7.8 46 274-319 76-121 (436)
425 1g29_1 MALK, maltose transport 91.7 0.086 2.9E-06 54.8 3.2 24 183-206 29-52 (372)
426 1zcb_A G alpha I/13; GTP-bindi 91.7 0.08 2.7E-06 54.8 2.9 37 167-204 18-54 (362)
427 3cbq_A GTP-binding protein REM 91.7 0.086 2.9E-06 48.3 2.8 23 182-204 22-44 (195)
428 3ug7_A Arsenical pump-driving 91.6 0.22 7.5E-06 50.8 6.1 41 181-222 24-64 (349)
429 1v43_A Sugar-binding transport 91.6 0.089 3E-06 54.8 3.2 25 182-206 36-60 (372)
430 1gwn_A RHO-related GTP-binding 91.6 0.094 3.2E-06 48.6 3.1 24 182-205 27-50 (205)
431 2x77_A ADP-ribosylation factor 91.6 0.09 3.1E-06 47.1 2.8 24 181-204 20-43 (189)
432 3nbx_X ATPase RAVA; AAA+ ATPas 91.5 0.063 2.1E-06 58.0 2.1 22 185-206 43-64 (500)
433 2fv8_A H6, RHO-related GTP-bin 91.5 0.097 3.3E-06 48.0 3.1 23 183-205 25-47 (207)
434 2fh5_B SR-beta, signal recogni 91.5 0.096 3.3E-06 48.0 3.0 24 182-205 6-29 (214)
435 1tf7_A KAIC; homohexamer, hexa 91.5 0.087 3E-06 56.5 3.1 19 185-203 41-59 (525)
436 3gd7_A Fusion complex of cysti 91.5 0.091 3.1E-06 55.1 3.1 25 182-206 46-70 (390)
437 4bas_A ADP-ribosylation factor 91.5 0.11 3.8E-06 46.5 3.3 25 181-205 15-39 (199)
438 2hup_A RAS-related protein RAB 91.5 0.099 3.4E-06 47.9 3.1 23 183-205 29-51 (201)
439 3lxw_A GTPase IMAP family memb 91.4 0.11 3.8E-06 50.0 3.5 25 181-205 19-43 (247)
440 2q3h_A RAS homolog gene family 91.4 0.12 4.1E-06 46.7 3.5 25 181-205 18-42 (201)
441 2h5e_A Peptide chain release f 91.4 0.55 1.9E-05 50.9 9.3 35 285-319 110-144 (529)
442 2yv5_A YJEQ protein; hydrolase 91.3 0.1 3.4E-06 52.3 3.2 23 184-207 166-188 (302)
443 2xtp_A GTPase IMAP family memb 91.3 0.12 4.1E-06 49.4 3.6 25 181-205 20-44 (260)
444 1r6b_X CLPA protein; AAA+, N-t 91.3 0.13 4.3E-06 57.4 4.2 24 184-207 489-512 (758)
445 2gco_A H9, RHO-related GTP-bin 91.2 0.11 3.7E-06 47.4 3.1 24 182-205 24-47 (201)
446 2atx_A Small GTP binding prote 91.2 0.11 3.8E-06 46.6 3.1 23 183-205 18-40 (194)
447 1oxx_K GLCV, glucose, ABC tran 91.2 0.071 2.4E-06 55.1 1.9 25 182-206 30-54 (353)
448 1d2e_A Elongation factor TU (E 91.2 1.3 4.3E-05 45.8 11.4 27 183-209 3-29 (397)
449 2j1l_A RHO-related GTP-binding 91.2 0.13 4.5E-06 47.5 3.6 24 182-205 33-56 (214)
450 2j0v_A RAC-like GTP-binding pr 91.2 0.15 5.2E-06 46.5 4.0 24 182-205 8-31 (212)
451 2qu8_A Putative nucleolar GTP- 91.2 0.14 4.7E-06 47.9 3.7 24 182-205 28-51 (228)
452 2npi_A Protein CLP1; CLP1-PCF1 91.1 0.088 3E-06 56.2 2.6 31 182-212 137-167 (460)
453 3e1s_A Exodeoxyribonuclease V, 91.1 0.14 4.7E-06 56.1 4.2 28 184-211 205-232 (574)
454 4ag6_A VIRB4 ATPase, type IV s 91.1 0.19 6.5E-06 51.4 5.0 34 185-219 37-70 (392)
455 2cjw_A GTP-binding protein GEM 91.0 0.11 3.8E-06 47.4 2.9 23 183-205 6-28 (192)
456 3zq6_A Putative arsenical pump 91.0 0.25 8.5E-06 49.7 5.7 39 183-222 14-52 (324)
457 2rcn_A Probable GTPase ENGC; Y 91.0 0.11 3.8E-06 53.9 3.2 22 184-205 216-237 (358)
458 3k53_A Ferrous iron transport 90.9 0.14 4.6E-06 49.8 3.5 23 183-205 3-25 (271)
459 1u0l_A Probable GTPase ENGC; p 90.9 0.11 3.9E-06 51.7 3.0 22 184-205 170-191 (301)
460 3k1j_A LON protease, ATP-depen 90.8 0.11 3.8E-06 56.7 3.1 23 185-207 62-84 (604)
461 1knx_A Probable HPR(Ser) kinas 90.7 0.13 4.3E-06 52.7 3.3 23 183-205 147-169 (312)
462 3czp_A Putative polyphosphate 90.7 0.36 1.2E-05 52.3 7.0 28 181-208 41-68 (500)
463 2oap_1 GSPE-2, type II secreti 90.7 0.085 2.9E-06 57.1 2.0 25 183-207 260-284 (511)
464 4dhe_A Probable GTP-binding pr 90.7 0.098 3.4E-06 48.1 2.2 35 285-319 120-154 (223)
465 1kjw_A Postsynaptic density pr 90.6 2 6.9E-05 43.0 11.9 65 271-345 184-248 (295)
466 3pxi_A Negative regulator of g 90.6 0.12 4.2E-06 57.8 3.3 24 185-208 203-226 (758)
467 2aka_B Dynamin-1; fusion prote 90.6 0.2 6.7E-06 48.5 4.3 24 182-205 25-48 (299)
468 3q3j_B RHO-related GTP-binding 90.5 0.14 4.8E-06 47.6 3.1 61 285-346 103-174 (214)
469 3llu_A RAS-related GTP-binding 90.5 0.13 4.5E-06 46.7 2.9 23 183-205 20-42 (196)
470 3ice_A Transcription terminati 90.5 0.77 2.6E-05 48.8 9.0 26 185-210 176-201 (422)
471 1ko7_A HPR kinase/phosphatase; 90.5 0.2 7E-06 51.2 4.5 24 183-206 144-167 (314)
472 1tq4_A IIGP1, interferon-induc 90.5 0.15 5E-06 53.9 3.6 24 182-205 68-91 (413)
473 3pxi_A Negative regulator of g 90.4 0.18 6.3E-06 56.3 4.5 23 185-207 523-545 (758)
474 3rhf_A Putative polyphosphate 90.4 0.41 1.4E-05 48.6 6.6 28 181-208 73-100 (289)
475 1ega_A Protein (GTP-binding pr 90.3 0.14 4.8E-06 51.0 3.1 23 183-205 8-30 (301)
476 3vqt_A RF-3, peptide chain rel 90.3 0.87 3E-05 49.5 9.6 38 279-318 124-161 (548)
477 2xkx_A Disks large homolog 4; 90.3 0.28 9.7E-06 54.9 5.9 69 266-344 605-673 (721)
478 1mky_A Probable GTP-binding pr 90.3 0.34 1.2E-05 50.7 6.1 114 185-315 3-116 (439)
479 3ea0_A ATPase, para family; al 90.2 0.31 1.1E-05 45.6 5.3 42 181-222 3-44 (245)
480 1a5t_A Delta prime, HOLB; zinc 90.2 0.17 5.8E-06 50.9 3.7 24 184-207 25-48 (334)
481 1z6t_A APAF-1, apoptotic prote 90.2 0.17 5.9E-06 54.1 3.9 24 182-205 146-169 (591)
482 2dy1_A Elongation factor G; tr 90.1 1 3.5E-05 50.0 10.2 35 280-316 99-133 (665)
483 3cpj_B GTP-binding protein YPT 90.1 0.15 5.2E-06 47.3 2.9 23 183-205 13-35 (223)
484 2orv_A Thymidine kinase; TP4A 90.0 1.2 4E-05 43.9 9.3 37 181-218 17-53 (234)
485 3end_A Light-independent proto 90.0 0.34 1.2E-05 47.6 5.6 37 184-221 42-78 (307)
486 3t5d_A Septin-7; GTP-binding p 90.0 0.17 5.7E-06 49.3 3.3 24 181-204 6-29 (274)
487 2qag_B Septin-6, protein NEDD5 90.0 0.13 4.4E-06 54.8 2.6 20 186-205 45-64 (427)
488 2woo_A ATPase GET3; tail-ancho 90.0 0.29 1E-05 49.4 5.2 40 182-222 18-57 (329)
489 2yc2_C IFT27, small RAB-relate 89.9 0.071 2.4E-06 48.0 0.5 25 182-206 19-43 (208)
490 3tsz_A Tight junction protein 89.7 0.36 1.2E-05 50.4 5.8 65 272-345 280-346 (391)
491 1ni3_A YCHF GTPase, YCHF GTP-b 89.7 0.16 5.3E-06 53.4 3.0 24 182-205 19-42 (392)
492 1dar_A EF-G, elongation factor 89.7 0.96 3.3E-05 50.5 9.5 39 279-319 101-139 (691)
493 1f2t_A RAD50 ABC-ATPase; DNA d 89.7 0.19 6.5E-06 45.0 3.2 25 183-207 23-47 (149)
494 3i8s_A Ferrous iron transport 89.7 0.2 6.8E-06 49.1 3.6 24 182-205 2-25 (274)
495 3thx_A DNA mismatch repair pro 89.7 1.9 6.4E-05 50.1 12.1 21 183-203 662-682 (934)
496 3b1v_A Ferrous iron uptake tra 89.7 0.19 6.6E-06 49.5 3.5 23 183-205 3-25 (272)
497 1g5t_A COB(I)alamin adenosyltr 89.6 1.5 5E-05 41.9 9.4 125 185-328 30-170 (196)
498 3a1s_A Iron(II) transport prot 89.6 0.18 6.2E-06 49.1 3.2 25 180-204 2-26 (258)
499 1r6b_X CLPA protein; AAA+, N-t 89.6 0.17 5.9E-06 56.3 3.4 30 178-207 202-231 (758)
500 1yqt_A RNAse L inhibitor; ATP- 89.5 0.17 5.7E-06 55.0 3.2 20 185-204 49-68 (538)
No 1
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.63 E-value=1.2e-15 Score=160.48 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=116.6
Q ss_pred CCCCCCCCCCCcCCCCCCCCCcccchhhhhc-CCC-CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432 143 PMQYPGESHLFPLRQLSPDKPKVVNALHLLK-QPH-RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM 220 (535)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~p~~v~~~~ll~-~p~-r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~ 220 (535)
.||++.....|.++.+ +|+.+.....++ ++. ......+.||||+|+|||||||+|+.|++.+ + ..+++.
T Consensus 219 ~~f~~~~~~~~~~~~f---~p~~~~~~~~~~~p~~~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~----~--~~~i~~ 289 (416)
T 3zvl_A 219 EFFLKWPAARFELPAF---DPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA----G--YVHVNR 289 (416)
T ss_dssp HHHSCCCCCCBCCCSC---CGGGCCSCSCSSBSTTSCSCCSSCCEEEEESCTTSSHHHHHHHHTGGG----T--CEECCG
T ss_pred HhhCCCCcCccccCCC---ChhhhcccccccCCCccccCCCCCEEEEEECCCCCCHHHHHHHHHHhc----C--cEEEcc
Confidence 4666766778865555 666666544444 332 4556788999999999999999999998753 1 234454
Q ss_pred CceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH
Q 009432 221 DDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ 300 (535)
Q Consensus 221 DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~ 300 (535)
|++. .+..+.+.+...|..|. .||||++|....+|..
T Consensus 290 D~~~-----------------------------------------~~~~~~~~~~~~l~~g~--~vIiD~~~~~~~~r~~ 326 (416)
T 3zvl_A 290 DTLG-----------------------------------------SWQRCVSSCQAALRQGK--RVVIDNTNPDVPSRAR 326 (416)
T ss_dssp GGSC-----------------------------------------SHHHHHHHHHHHHHTTC--CEEEESCCCSHHHHHH
T ss_pred chHH-----------------------------------------HHHHHHHHHHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 4321 12234556677888998 9999999999999999
Q ss_pred HHHHHhhcCceEEEEEEecCCHHHHHHhhcC---------CCCHHHHHHHhhccccC
Q 009432 301 FWATAKRSGYEVYILEATYKDPAGCAARNVH---------GFTLDDIERMAGQWEEA 348 (535)
Q Consensus 301 f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---------~VpeEvIe~M~krfE~~ 348 (535)
++++++++++.+.+|+|.+ +.++|++|+.. .++++++++|.++||++
T Consensus 327 ~~~~~~~~~~~~~~v~l~~-~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P 382 (416)
T 3zvl_A 327 YIQCAKDAGVPCRCFNFCA-TIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPP 382 (416)
T ss_dssp HHHHHHHHTCCEEEEEECC-CHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCeEEEEEEeC-CHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999987 78888887652 57899999999999974
No 2
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.60 E-value=6.1e-15 Score=133.56 Aligned_cols=138 Identities=25% Similarity=0.228 Sum_probs=101.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
+.+|+|+|+|||||||+|+.|++. ..+ ..+++.|.++..... ... +. ...|....
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~---~~~--~~~i~~d~~r~~~~~-~~~-----------~~--------~~~~~~~~ 56 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK---NPG--FYNINRDDYRQSIMA-HEE-----------RD--------EYKYTKKK 56 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH---STT--EEEECHHHHHHHHTT-SCC-----------GG--------GCCCCHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh---cCC--cEEecHHHHHHHhhC-CCc-----------cc--------hhhhchhh
Confidence 468999999999999999999972 112 356677665443211 000 00 00122233
Q ss_pred HHHHHHHHHHHHHHHH---HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCH
Q 009432 263 EEAYRSSMLKAFTRTL---DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTL 335 (535)
Q Consensus 263 ee~~~q~llk~akkaL---k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~Vpe 335 (535)
+...++.+...+..+| +.|. .||+|+++....+|..|.++++.+|+.+.+|++.+ +.++|++|... .++.
T Consensus 57 ~~~~~~~~~~~~~~~l~~~~~g~--~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~ 133 (181)
T 1ly1_A 57 EGIVTGMQFDTAKSILYGGDSVK--GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPI 133 (181)
T ss_dssp HHHHHHHHHHHHHHHHTSCSSCC--EEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCC-CHHHHHHHHTTCGGGCCCH
T ss_pred hhHHHHHHHHHHHHHHhhccCCC--eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHhccccCCCCH
Confidence 3344555666677788 7888 99999999999999999999999999988888887 88999888654 6789
Q ss_pred HHHHHHhhccccC
Q 009432 336 DDIERMAGQWEEA 348 (535)
Q Consensus 336 EvIe~M~krfE~~ 348 (535)
+.|++++++|+..
T Consensus 134 ~~i~~~~~~~~~~ 146 (181)
T 1ly1_A 134 DVLRSMYKSMREY 146 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999999999975
No 3
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.55 E-value=1.9e-14 Score=156.06 Aligned_cols=159 Identities=21% Similarity=0.320 Sum_probs=105.0
Q ss_pred CCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh
Q 009432 175 PHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM 254 (535)
Q Consensus 175 p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ 254 (535)
.++.....+.+|||+|+|||||||+|++|++++.+. +..+.+|+.|++++........
T Consensus 27 ~~~~~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~-~~d~~v~s~D~~r~~~~~~~~~--------------------- 84 (520)
T 2axn_A 27 CGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWI-GVPTKVFNVGEYRREAVKQYSS--------------------- 84 (520)
T ss_dssp CCC---CCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHSCCCC---------------------
T ss_pred CcccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeEEecccHHHHHhccCCcc---------------------
Confidence 345566788999999999999999999999987654 3455788999977654321000
Q ss_pred hccCchHHHHH------HHHHHHHHHHHHH--HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHH
Q 009432 255 EYCYEPEMEEA------YRSSMLKAFTRTL--DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCA 326 (535)
Q Consensus 255 ey~y~~e~ee~------~~q~llk~akkaL--k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci 326 (535)
...|++..++. ....+++.+...| +.|. +||||+||....+|..++++++++|+.+++|++.|++.+ |+
T Consensus 85 ~~~f~~~~~~~~~~re~~~~~~l~~~~~~L~~~~g~--~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e-~i 161 (520)
T 2axn_A 85 YNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEGGQ--IAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPT-VV 161 (520)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHSCCC--EEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHH-HH
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHH-HH
Confidence 01122222211 1112233445556 5677 999999999999999999999999999999999985444 44
Q ss_pred Hhhc-----C-----C-CCHHHHHHHhhccccCCccceeecCC
Q 009432 327 ARNV-----H-----G-FTLDDIERMAGQWEEAPTLYLQLDIK 358 (535)
Q Consensus 327 ~RNi-----h-----~-VpeEvIe~M~krfE~~p~~y~~lD~~ 358 (535)
+||+ . + .++++++.|.++++.....|..++..
T Consensus 162 ~~ri~~r~~~rPdl~~~d~e~~~~~~~~Ri~~y~~~Yepi~~e 204 (520)
T 2axn_A 162 ASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPD 204 (520)
T ss_dssp HHHHHHHTTTSGGGTTSCHHHHHHHHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHhhhhcCCccccCCHHHHHHHHHHHHHhhhhhhcccChh
Confidence 3333 1 1 34566777766666555666666643
No 4
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.54 E-value=9.7e-14 Score=136.37 Aligned_cols=138 Identities=25% Similarity=0.251 Sum_probs=98.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...+|+|+|+|||||||+|+.|++.+.+.| ....+++.|+++.... + |...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~~~l~-~---------------------------~~~~ 53 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIRESFP-V---------------------------WKEK 53 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHHTTSS-S---------------------------CCGG
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCC-CEEEEECchHHHHHHh-h---------------------------hhHH
Confidence 357999999999999999999998865443 2222246555442211 0 1111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHH
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDI 338 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvI 338 (535)
.+...+......+..+|+. . .||||+++.....|..+.++|+.+++...+|+|.+ ++++|++|+.. .++.+.+
T Consensus 54 ~e~~~~~~~~~~i~~~l~~-~--~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~~~~l 129 (260)
T 3a4m_A 54 YEEFIKKSTYRLIDSALKN-Y--WVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKA-SLDVLIRRNIERGEKIPNEVI 129 (260)
T ss_dssp GHHHHHHHHHHHHHHHHTT-S--EEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEEC-CHHHHHHHHHHTTCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC-C--EEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHHhCCCCCCHHHH
Confidence 1112222233445566666 6 99999999999999999999999999999999997 89999998764 5688999
Q ss_pred HHHhhccccCCccc
Q 009432 339 ERMAGQWEEAPTLY 352 (535)
Q Consensus 339 e~M~krfE~~p~~y 352 (535)
+.+..+|+.+...|
T Consensus 130 ~~~~~~~e~~~~~~ 143 (260)
T 3a4m_A 130 KKMYEKFDEPGKKY 143 (260)
T ss_dssp HHHHHHCCCTTSSC
T ss_pred HHHHHHhcCccccC
Confidence 99999998755433
No 5
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.45 E-value=3.7e-13 Score=133.11 Aligned_cols=138 Identities=24% Similarity=0.214 Sum_probs=99.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
+.+|+|+|+|||||||+|+.|++.+ .+ ..+++.|+++.... +... +.. ..|....
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~---~~--~~~i~~D~~r~~~~-~~~~-----------g~~--------~~~~~~~ 56 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN---PG--FYNINRDDYRQSIM-AHEE-----------RDE--------YKYTKKK 56 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS---TT--EEEECHHHHHHHHT-TSCC-----------CC-----------CCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC---CC--cEEecccHHHHHhc-cCCc-----------ccc--------cccchhh
Confidence 4689999999999999999999742 12 35668886554321 1000 000 0122222
Q ss_pred HHHHHHHHHHHHHHHH---HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCH
Q 009432 263 EEAYRSSMLKAFTRTL---DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTL 335 (535)
Q Consensus 263 ee~~~q~llk~akkaL---k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~Vpe 335 (535)
+....+.+.+.+...| ..|. .||+|+++....+|..|.++++++++.+.+|++.+ +.++|++|.. |.++.
T Consensus 57 ~~~~~~~~~~~~~~~l~~~~~g~--~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~ 133 (301)
T 1ltq_A 57 EGIVTGMQFDTAKSILYGGDSVK--GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPI 133 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCC--EEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCC-CHHHHHHHHHHCGGGCCCH
T ss_pred hhHHHHHHHHHHHHHHhhccCCC--EEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHHhccCCCCCH
Confidence 3333444556677778 7888 99999999999999999999999999998999987 7888877654 57889
Q ss_pred HHHHHHhhccccC
Q 009432 336 DDIERMAGQWEEA 348 (535)
Q Consensus 336 EvIe~M~krfE~~ 348 (535)
+.|++++++|++.
T Consensus 134 e~i~~~~~~~~~~ 146 (301)
T 1ltq_A 134 DVLRSMYKSMREY 146 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999864
No 6
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.32 E-value=6.7e-12 Score=115.14 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=79.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
..+.+|+|+|+|||||||+|+.|++.+ + . .+++.|+++......... . . . + |..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l----~-~-~~i~~D~~~~~~~~~~~~---------~-~-~-------~--~~~ 56 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL----R-L-PLLSKDAFKEVMFDGLGW---------S-D-R-------E--WSR 56 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH----T-C-CEEEHHHHHHHHHHHHCC---------C-S-H-------H--HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc----C-C-eEecHHHHHHHHHHhcCc---------c-c-h-------H--HHH
Confidence 356899999999999999999999875 2 2 356777765433211100 0 0 0 0 111
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV 330 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi 330 (535)
......++.+...+...++.|. .||+|+++.....+..|.++++..+..+.+|+|.+ ++++|++|..
T Consensus 57 ~~~~~~~~~~~~~~~~~l~~g~--~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~-~~e~~~~R~~ 123 (193)
T 2rhm_A 57 RVGATAIMMLYHTAATILQSGQ--SLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVA-SGDVLVERIL 123 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEEC-CHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhCCC--eEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeC-CHHHHHHHHH
Confidence 1222334555556677788898 99999998433344567677777788888999987 7888887753
No 7
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.30 E-value=1.1e-11 Score=132.04 Aligned_cols=154 Identities=22% Similarity=0.294 Sum_probs=94.2
Q ss_pred CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc-ccccccccccCCccCCcchhhhhhh
Q 009432 177 RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK-VEDSDVSKSSGSLRSKKPVTKMVME 255 (535)
Q Consensus 177 r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~-v~~~~~sk~~g~~r~kk~l~kkv~e 255 (535)
+.....+++|+|+|+|||||||+|++|++.+.+. .....+++.|+++...... .. .
T Consensus 33 ~~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~----------------------~ 89 (469)
T 1bif_A 33 VCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKS----------------------F 89 (469)
T ss_dssp -----CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCC----------------------G
T ss_pred ccCCCCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCc----------------------c
Confidence 4445678899999999999999999999987654 3345666777765543211 00 0
Q ss_pred ccCchHHH------HHHHHHHHHHHHHHH--HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432 256 YCYEPEME------EAYRSSMLKAFTRTL--DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA 327 (535)
Q Consensus 256 y~y~~e~e------e~~~q~llk~akkaL--k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~ 327 (535)
.+|+...+ +.....++..+...+ ..|. +||+|++|...++|+.|++++++.++.++++++.|.+++.+ .
T Consensus 90 ~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~--~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i-~ 166 (469)
T 1bif_A 90 EFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGH--VAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVI-A 166 (469)
T ss_dssp GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCS--EEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHH-H
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC--EEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHH-H
Confidence 01111111 111112233345566 5576 99999999999999999999999999999999987555443 4
Q ss_pred hhcC----------CCCH-HHHHHHhhccccCCccceeec
Q 009432 328 RNVH----------GFTL-DDIERMAGQWEEAPTLYLQLD 356 (535)
Q Consensus 328 RNih----------~Vpe-EvIe~M~krfE~~p~~y~~lD 356 (535)
+|+. .++. +.++.+.+++......|..||
T Consensus 167 ~r~~~~~~~rp~~~~~~~e~~~~~~~~R~~~y~~~ye~l~ 206 (469)
T 1bif_A 167 ANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLD 206 (469)
T ss_dssp HHHHHHTTTSTTTTTSCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhhhcCCcccCCCHHHHHHHHHHHHHHhccEeEECC
Confidence 3332 1233 333556555544344444444
No 8
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.29 E-value=2.1e-11 Score=122.31 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=96.8
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE 259 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~ 259 (535)
...+.+|||+|+|||||||+|+.|++.+ .+ ...+++.|+++..... . ..+.....+ +.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~---~~-~~~~Is~D~~R~~~~~-~---------------~~~~~~~~~--~a 87 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET---QG-NVIVIDNDTFKQQHPN-F---------------DELVKLYEK--DV 87 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT---TT-CCEEECTHHHHTTSTT-H---------------HHHHHHHGG--GC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---CC-CeEEEechHhHHhchh-h---------------HHHHHHccc--hh
Confidence 4467899999999999999999998763 11 2345677666532210 0 000011111 11
Q ss_pred hHHHHHHHHH-HHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHH----HHhh-----
Q 009432 260 PEMEEAYRSS-MLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGC----AARN----- 329 (535)
Q Consensus 260 ~e~ee~~~q~-llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~c----i~RN----- 329 (535)
......++.. ....+..+++.|. .||||+++....++.++.+++++.|+.+.++.+.+ ++++| .+|.
T Consensus 88 ~~~~~~~~~~~~~~~v~~~l~~g~--~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~-p~~~~~l~~~~Rl~~R~~ 164 (287)
T 1gvn_B 88 VKHVTPYSNRMTEAIISRLSDQGY--NLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAV-PKINSYLGTIERYETMYA 164 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--CEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECC-CHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCC--eEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEEC-CHHHHHHHHHHHHHHHHH
Confidence 1111223333 3345677788898 99999999998889999999999999988888886 78888 7774
Q ss_pred -----cCCCCHHHHHHHhhccccC
Q 009432 330 -----VHGFTLDDIERMAGQWEEA 348 (535)
Q Consensus 330 -----ih~VpeEvIe~M~krfE~~ 348 (535)
.+.++.+.++.+++++...
T Consensus 165 ~g~l~~R~~~~e~~~~i~~rl~~a 188 (287)
T 1gvn_B 165 DDPMTARATPKQAHDIVVKNLPTN 188 (287)
T ss_dssp HCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred hCCCCCCCCCHHHHHHHHHHHHHH
Confidence 2367778888887776543
No 9
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.25 E-value=1.1e-10 Score=107.72 Aligned_cols=120 Identities=19% Similarity=0.112 Sum_probs=81.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
....+|+|+|++||||||+|+.|++.+...|+ ...++..|.++. ...+ +..|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~-~~~~~~~d~~~~-~~~~------------------------~~~~~~ 64 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGY-RVEVLDGDWART-TVSE------------------------GAGFTR 64 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEHHHHHT-TTTT------------------------TCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEeeHHHHHH-HHhh------------------------ccCCCh
Confidence 45689999999999999999999998765443 223444444321 1100 011222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
......+..+...+...+..|. +||+|.++.....|..+.++++..+....+|++++ ++++|++|.
T Consensus 65 ~~r~~~~~~~~~~~~~~~~~g~--~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~-~~e~~~~R~ 130 (186)
T 2yvu_A 65 EERLRHLKRIAWIARLLARNGV--IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKA-SLEEVIRRD 130 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC--EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEEC-CHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHhCCC--EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeC-CHHHHHHhh
Confidence 2222222333333444567787 99999999888888889988888888888899997 899999985
No 10
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.25 E-value=5.8e-11 Score=107.95 Aligned_cols=129 Identities=18% Similarity=0.139 Sum_probs=75.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
+.+|+|+|+|||||||+|+.|++.+ +.....++.|+++........... .| ..+.. .. ..+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l----~~~~~~~~~D~~~~~~~~~~~~~~----~~-----~~~~~-~~-~~~~~~~ 67 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAE----GG-----IEFDA-DG-GVSIGPE 67 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS----SSCEEEEEHHHHHHHSCGGGGTST----TS-----EEECT-TS-CEEECHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc----CCCeEEeccchHhhhcchhhccch----hh-----ccccC-CC-ccccchh
Confidence 3589999999999999999999874 222233466766432211100000 00 00000 00 0011111
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCC-CHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNL-RVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~-~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
....+..+...+...++.|. .||+|+++. ....+..+.++++. ..+.+|++.+ +.++|.+|...
T Consensus 68 ~~~~~~~~~~~~~~~~~~g~--~vi~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l~~-~~e~l~~R~~~ 132 (178)
T 1qhx_A 68 FRALEGAWAEGVVAMARAGA--RIIIDDVFLGGAAAQERWRSFVGD--LDVLWVGVRC-DGAVAEGRETA 132 (178)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--EEEEEECCTTTHHHHHHHHHHHTT--CCEEEEEEEC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC--eEEEEeccccChHHHHHHHHHhcC--CcEEEEEEEC-CHHHHHHHHHh
Confidence 12233444455666778888 999999886 45667777777754 4556777776 78999988753
No 11
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.20 E-value=9.1e-11 Score=106.88 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=78.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
++.+|+|+|+|||||||+|+.|++.+ + ...++..+.+ ........ . .+.. .+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l----~-~~~i~d~~~~-g~~i~~~~--------~--~g~~-------~~~~~~~ 60 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL----P-GSFVFEPEEM-GQALRKLT--------P--GFSG-------DPQEHPM 60 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS----T-TCEECCTHHH-HHHHHHTS--------T--TCCS-------CGGGSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc----C-CCEEEchhhh-HHHHHHhC--------c--cccc-------hhhhhHH
Confidence 35689999999999999999998764 2 2223121100 00000000 0 0000 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCHH
Q 009432 262 MEEAYRSSMLKAFTRTLDE-GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTLD 336 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~-G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~VpeE 336 (535)
. .+.+.+.+...++. |. +||+|+++...+.+..+++++++.|+.+.+|.+.+ ++++|++|... ....+
T Consensus 61 ~----~~~~~~~i~~~l~~~g~--~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~-~~e~~~~R~~~R~~r~~~~~ 133 (183)
T 2vli_A 61 W----IPLMLDALQYASREAAG--PLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIA-PLNVVLERLRRDGQPQVNVG 133 (183)
T ss_dssp H----HHHHHHHHHHHHHHCSS--CEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEEC-CHHHHHHHHHTC----CCHH
T ss_pred H----HHHHHHHHHHHHHhCCC--cEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeC-CHHHHHHHHHhccccchhHH
Confidence 1 11222334455555 66 89999999998889899999988887777788887 78999888654 24567
Q ss_pred HHHHHhhcccc
Q 009432 337 DIERMAGQWEE 347 (535)
Q Consensus 337 vIe~M~krfE~ 347 (535)
.++.+++.++.
T Consensus 134 ~~~~~~~~~~~ 144 (183)
T 2vli_A 134 TVEDRLNELRG 144 (183)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHhhcc
Confidence 77777766654
No 12
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.18 E-value=1.7e-10 Score=107.80 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=84.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
..+|+|+|++||||||+|+.|++.+ | ..+++.|+++....... + .....+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g--~~~i~~d~~~~~~~~~~-----------------~---~~g~~~~~~~ 71 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----G--YPFIEGDALHPPENIRK-----------------M---SEGIPLTDDD 71 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----T--CCEEEGGGGCCHHHHHH-----------------H---HHTCCCCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----C--CEEEeCCcCcchhhHHH-----------------H---hcCCCCCchh
Confidence 5689999999999999999999875 2 24667787754221000 0 0011122111
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHHH
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDDI 338 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEvI 338 (535)
.. ..+..+...+..|. .||||+++.....+..+.+++ +..+.+|.+.+ +.++|++|.. +..+.+.+
T Consensus 72 ~~----~~~~~l~~~~~~~~--~vivd~~~~~~~~~~~l~~~~---~~~~~vi~l~~-~~e~~~~Rl~~R~~~~~~~~~~ 141 (202)
T 3t61_A 72 RW----PWLAAIGERLASRE--PVVVSCSALKRSYRDKLRESA---PGGLAFVFLHG-SESVLAERMHHRTGHFMPSSLL 141 (202)
T ss_dssp HH----HHHHHHHHHHTSSS--CCEEECCCCSHHHHHHHHHTS---TTCCEEEEEEC-CHHHHHHHHHHHHSSCCCHHHH
T ss_pred hH----HHHHHHHHHHhcCC--CEEEECCCCCHHHHHHHHHhc---CCCeEEEEEeC-CHHHHHHHHHHhhccCCCHHHH
Confidence 11 12233445557787 899999999888887766554 45566777876 7888777643 34678888
Q ss_pred HHHhhcccc
Q 009432 339 ERMAGQWEE 347 (535)
Q Consensus 339 e~M~krfE~ 347 (535)
++++..+++
T Consensus 142 ~~~~~~~~~ 150 (202)
T 3t61_A 142 QTQLETLED 150 (202)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHhcCC
Confidence 888888875
No 13
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.16 E-value=2e-10 Score=112.10 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=81.0
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc--ccccccccccCCccCCcchhhhhhhcc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK--VEDSDVSKSSGSLRSKKPVTKMVMEYC 257 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~--v~~~~~sk~~g~~r~kk~l~kkv~ey~ 257 (535)
...+.+|+|+|+|||||||+|+.|++.+ +....+++.|+++...... +.. ..|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l----~~~~~~~~~D~~r~~~~~~~~i~~-----~~g~~-------------- 85 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF----QGNIVIIDGDSFRSQHPHYLELQQ-----EYGKD-------------- 85 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT----TTCCEEECGGGGGTTSTTHHHHHT-----TCSST--------------
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc----CCCcEEEecHHHHHhchhHHHHHH-----HcCch--------------
Confidence 4567899999999999999999999864 1123444555543321000 000 00100
Q ss_pred CchHHHHH-HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 258 YEPEMEEA-YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 258 y~~e~ee~-~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
..+.... ....+...+..+++.|. .||||+++.....+..+.+++++.|+.+.++.+.+ +.++|.+|.
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~g~--~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~ 154 (253)
T 2p5t_B 86 -SVEYTKDFAGKMVESLVTKLSSLGY--NLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLST 154 (253)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHH
T ss_pred -HHHHhhHHHHHHHHHHHHHHHhcCC--CEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHH
Confidence 0011111 11222344556677887 89999999988889999999999999998888876 889999985
No 14
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.12 E-value=5.9e-10 Score=105.32 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=77.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH-HcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV-ENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~-e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
...+|+|+|++||||||+|+.|.+.+. .. |....+++.|+++ ..... ...|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~-g~~~~~~~~d~~r-~~l~~------------------------~~~~~~ 77 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNIR-FGLNK------------------------DLGFSE 77 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHHT-TTTTT------------------------TCCSSH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccc-CCcEEEECChHHh-hhhcc------------------------ccCCCH
Confidence 456899999999999999999998874 32 2222333333332 11100 011221
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHh------hcCceEEEEEEecCCHHHHHHhh
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAK------RSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr------~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
......+..+...+...++.|. .||+|..+.....|..+.+++. ..+.+..+|++++ ++++|.+|.
T Consensus 78 ~~r~~~~~~~~~~~~~~l~~g~--~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~-~~e~~~~R~ 149 (211)
T 1m7g_A 78 ADRNENIRRIAEVAKLFADSNS--IAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDV-PVEVAEQRD 149 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEEC-CHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--EEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeC-CHHHHHHhh
Confidence 2222233344455667788898 9999976655677877878776 4556788899987 899999995
No 15
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.12 E-value=3.3e-09 Score=96.41 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=79.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh-ccccccccccccCCccCCcchhhhhhhccCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV-EKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE 259 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~-e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~ 259 (535)
....+|+|+|++||||||+++.|...+ | ..+++.|++..... ... ..| +.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g--~~~i~~d~~~~~~~~~~~-------~~g--------------~~~~ 58 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----H--AAFLDGDFLHPRRNIEKM-------ASG--------------EPLN 58 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----T--CEEEEGGGGCCHHHHHHH-------HTT--------------CCCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----C--cEEEeCccccchHHHHHh-------hcC--------------cCCC
Confidence 345789999999999999999998764 2 34667777653210 000 000 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCH
Q 009432 260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTL 335 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~Vpe 335 (535)
..........+...+...+..|. .||||.++.....+. .+++.+..+.+|++++ ++++|++|... ....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~--~~vi~~~~~~~~~~~----~l~~~~~~~~vv~l~~-~~e~~~~R~~~R~~~~~~~ 131 (175)
T 1knq_A 59 DDDRKPWLQALNDAAFAMQRTNK--VSLIVCSALKKHYRD----LLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKT 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS--EEEEECCCCSHHHHH----HHHTTCTTEEEEEEEC-CHHHHHHHHHTSTTCCCCH
T ss_pred ccccccHHHHHHHHHHHHHhcCC--cEEEEeCchHHHHHH----HHHhcCCCEEEEEEEC-CHHHHHHHHHhccCCCCch
Confidence 11111112223333455566787 899999887765544 4455555667788886 78999888654 2346
Q ss_pred HHHHHHhhcccc
Q 009432 336 DDIERMAGQWEE 347 (535)
Q Consensus 336 EvIe~M~krfE~ 347 (535)
+.++.+...+++
T Consensus 132 ~~~~~~~~~~~~ 143 (175)
T 1knq_A 132 QMLVTQFETLQE 143 (175)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHhhhC
Confidence 667666555543
No 16
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.09 E-value=1.1e-09 Score=99.78 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=72.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh--ccCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME--YCYE 259 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e--y~y~ 259 (535)
.+.+|+|+|.|||||||+|+.|++.+ + ..+++.|++++.....- .. .+ + ...++... ..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~----~--~~~i~~d~~~~~~~~~~--~~---~~----~--~~~~~~~~~g~~~~ 64 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY----G--YTHLSAGELLRDERKNP--DS---QY----G--ELIEKYIKEGKIVP 64 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHCT--TS---TT----H--HHHHHHHHTTCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh----C--CeEEeHHHHHHHHHhcc--CC---hH----H--HHHHHHHHCCCcCC
Confidence 35799999999999999999999865 2 35678888876543210 00 00 0 00111110 0111
Q ss_pred hHH-HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 260 PEM-EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 260 ~e~-ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
.+. ....+..+.. ....+..+. .||+|+.......+..|.+.+......-.+|.+.+ ++++|++|.
T Consensus 65 ~~~~~~~l~~~~~~-~~~~~~~~~--~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~ 131 (196)
T 1tev_A 65 VEITISLLKREMDQ-TMAANAQKN--KFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC-NNEICIERC 131 (196)
T ss_dssp HHHHHHHHHHHHHH-HHHHCTTCC--EEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-hhccccCCC--eEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEEC-CHHHHHHHH
Confidence 111 1111222111 122233466 89999999988887777776654323335677776 788877764
No 17
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.08 E-value=1e-09 Score=102.80 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=81.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
....+|+|+|++||||||+++.|+..+ | ..+++.|++....... +....+.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g--~~~i~~d~~~~~~~~~--------------------~~~~g~~~~~ 80 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----G--LEFAEADAFHSPENIA--------------------TMQRGIPLTD 80 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----C--CEEEEGGGGSCHHHHH--------------------HHHTTCCCCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----C--CeEEcccccccHHHHH--------------------HHhcCCCCCC
Confidence 345689999999999999999999865 2 2455667664321100 0001122222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCHH
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTLD 336 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~VpeE 336 (535)
.........+...+...+..|. .+|+|..+.....|..+ ++....+.+|++.+ +.++|++|... ..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~--~viid~~~~~~~~~~~l----~~~~~~~~vv~l~~-~~e~l~~Rl~~R~~~~~~~~ 153 (200)
T 4eun_A 81 EDRWPWLRSLAEWMDARADAGV--STIITCSALKRTYRDVL----REGPPSVDFLHLDG-PAEVIKGRMSKREGHFMPAS 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--CEEEEECCCCHHHHHHH----TTSSSCCEEEEEEC-CHHHHHHHHTTCSCCSSCGG
T ss_pred cccccHHHHHHHHHHHHHhcCC--CEEEEchhhhHHHHHHH----HHhCCceEEEEEeC-CHHHHHHHHHhcccCCCCHH
Confidence 2211122233334455567787 89999998887666544 33333556777776 78889888654 33456
Q ss_pred HHHHHhhcccc
Q 009432 337 DIERMAGQWEE 347 (535)
Q Consensus 337 vIe~M~krfE~ 347 (535)
.++.++..+++
T Consensus 154 ~l~~~~~~~~~ 164 (200)
T 4eun_A 154 LLQSQLATLEA 164 (200)
T ss_dssp GHHHHHHHCCC
T ss_pred HHHHHHHHhCC
Confidence 77777766664
No 18
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.02 E-value=2.1e-09 Score=100.73 Aligned_cols=121 Identities=19% Similarity=0.131 Sum_probs=78.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
....+|+|+|++||||||+|+.|+..+... |.....+..|++...... ...|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~-G~~~~~~d~d~~~~~~~~-------------------------~~~~~~ 76 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQK-GKLCYILDGDNVRHGLNR-------------------------DLSFKA 76 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHTTTTTT-------------------------TCCSSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEecCchhhhHhhc-------------------------ccCcCh
Confidence 456799999999999999999999887532 322123344443321100 011222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCC
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHG 332 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~ 332 (535)
+.....+..+...+...+..|. .||++..+.....|..+.+++. +..+.+|++++ ++++|.+|..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~vi~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a-~~e~~~~R~~~~ 143 (200)
T 3uie_A 77 EDRAENIRRVGEVAKLFADAGI--ICIASLISPYRTDRDACRSLLP--EGDFVEVFMDV-PLSVCEARDPKG 143 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHTSC--TTSEEEEEECC-CHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCCc--eEEEecCCchHHHHHHHHHhcC--CCCEEEEEEeC-CHHHHHHhcccc
Confidence 2222223334444555567787 9999999999888888877665 34566788886 899999997543
No 19
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.98 E-value=3.8e-09 Score=117.28 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=83.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
++++|+|+|+|||||||+|+.|++++...| .. .++...|.++..... ...|..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G-~~-~v~lDgD~iR~~L~~------------------------~~~fs~~ 104 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG-IP-CYTLDGDNIRQGLNK------------------------NLGFSPE 104 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEESHHHHTTTTTT------------------------TCCSSHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-Ce-EEEechHHhhhccCc------------------------cccCChh
Confidence 578999999999999999999999875443 22 232222333321110 0113322
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
........+.+.++..++.|. +||+|.+......|..+.++++..+.++.+|++++ ++++|++|...
T Consensus 105 dree~~r~i~eva~~~l~~G~--iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Lda-p~Evl~~Rl~r 171 (630)
T 1x6v_B 105 DREENVRRIAEVAKLFADAGL--VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDA-PLHVCEQRDVK 171 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEEC-CHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHHHhCCC--EEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEEC-CHHHHHHHhcc
Confidence 222233344445566678898 99999777777789999999998888889999997 89999999764
No 20
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.97 E-value=5.8e-09 Score=114.52 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=84.0
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE 259 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~ 259 (535)
...+++|+|+|+|||||||+|+.|++++...|+....++..|.++. ...+ +..|.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~-~l~~------------------------~~~f~ 447 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH-ELSS------------------------ELGFT 447 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH-HTCT------------------------TCCCS
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH-Hhcc------------------------ccCCC
Confidence 3567899999999999999999999987654323334545454333 1110 01122
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCC
Q 009432 260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHG 332 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~ 332 (535)
..........+...+...++.|. +||+|.++.....|..+.++++..| .+.+|++++ ++++|++|..++
T Consensus 448 ~~er~~~i~ri~~v~~~~~~~g~--~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda-~~ev~~~R~~r~ 516 (573)
T 1m8p_A 448 REDRHTNIQRIAFVATELTRAGA--AVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVAT-PLEHCEQSDKRG 516 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECC-CHHHHHHHCSSC
T ss_pred hhHHHHHHHHHHHHHHHHHhCCC--EEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeC-CHHHHHHHhccc
Confidence 21111122334445666778898 9999998888889999888888766 567788886 899999997553
No 21
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.95 E-value=1.5e-09 Score=101.22 Aligned_cols=141 Identities=19% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh--hcc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM--EYC 257 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~--ey~ 257 (535)
...+++|+|+|+|||||||+|+.|++.+ + . .+++.|++++....... . . + +.+...+. +..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l----~-~-~~i~~d~~~r~~~~~~~--~----~----g-~~i~~~~~~g~~~ 79 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL----G-I-PQISTGELFRRNIEEGT--K----L----G-VEAKRYLDAGDLV 79 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH----T-C-CEEEHHHHHHHHHHTTC--H----H----H-HHHHHHHHHTCCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh----C-C-cEEehhHHHHHHHHcCC--h----H----H-HHHHHHHHcCCcc
Confidence 4566799999999999999999999875 2 2 36688888765321100 0 0 0 00100000 111
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC----C
Q 009432 258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH----G 332 (535)
Q Consensus 258 y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih----~ 332 (535)
+... ....+.+.+.. +..|. .||+|+......++..|.+++...+..+ .+|.+.+ ++++|++|... .
T Consensus 80 ~~~~----~~~~~~~~~~~-~~~~~--~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~-~~e~~~~Rl~~R~r~~ 151 (201)
T 2cdn_A 80 PSDL----TNELVDDRLNN-PDAAN--GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRV-SEEVLLERLKGRGRAD 151 (201)
T ss_dssp CHHH----HHHHHHHHTTS-GGGTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHHHCCTT
T ss_pred cHHH----HHHHHHHHHhc-ccCCC--eEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCCCCC
Confidence 1111 11111111111 23465 7899998888888888878787766544 6777877 78888877542 2
Q ss_pred CCHHHHHHHhhcc
Q 009432 333 FTLDDIERMAGQW 345 (535)
Q Consensus 333 VpeEvIe~M~krf 345 (535)
.+.+.+++....|
T Consensus 152 ~~~e~~~~r~~~~ 164 (201)
T 2cdn_A 152 DTDDVILNRMKVY 164 (201)
T ss_dssp CSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3455555444333
No 22
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.91 E-value=6.5e-09 Score=94.59 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=70.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
.+.+|+|+|.|||||||+|+.|++.+ + ..+++.|++++..... +. . ..+.+..-+.......
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l----~--~~~i~~d~~~~~~~~~---~~-------~-~~~~i~~~~~~g~~~~- 66 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF----G--WVHLSAGDLLRQEQQS---GS-------K-DGEMIATMIKNGEIVP- 66 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHT---TC-------T-THHHHHHHHHTTCCCC-
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh----C--CeEeeHHHHHHHHHhc---CC-------H-HHHHHHHHHHCCCCCC-
Confidence 35789999999999999999999865 2 3577888877654310 00 0 0011111000000110
Q ss_pred HHHHHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 262 MEEAYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
....+..+ ...+. .|. .||+|+.......+..|...+......-.+|.+.+ +.++|++|.
T Consensus 67 -~~~~~~~l----~~~i~~~~~~--~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~-~~e~~~~R~ 128 (194)
T 1qf9_A 67 -SIVTVKLL----KNAIDANQGK--NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDC-PEEVMTQRL 128 (194)
T ss_dssp -HHHHHHHH----HHHHHTSTTC--CEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHH
T ss_pred -HHHHHHHH----HHHHHhcCCC--CEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEEC-CHHHHHHHH
Confidence 11112222 22222 465 89999988888777777776664322334667776 788877764
No 23
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.91 E-value=3.2e-09 Score=99.70 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=74.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
.|+|+|+|||||||+|+.|++.+ + ..+++.|++++....... . ..+.+...+....+.+. .
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~----~--~~~i~~d~~~r~~~~~~~----------~-~~~~~~~~~~~g~~~~~--~ 62 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY----E--IPHISTGDMFRAAIKNGT----------E-LGLKAKSFMDQGNLVPD--E 62 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----C--CCEEEHHHHHHHHHHTTC----------H-HHHHHHHHHHHTCCCCH--H
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CcEeeHHHHHHHHHhcCC----------H-HHHHHHHHHHCCCCCCH--H
Confidence 58899999999999999998764 2 246788888876543100 0 00011110111111111 1
Q ss_pred HHHHHHHHHHHHHH---HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhc
Q 009432 265 AYRSSMLKAFTRTL---DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNV 330 (535)
Q Consensus 265 ~~~q~llk~akkaL---k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNi 330 (535)
.....+...+ ..+. .+|+|+......++..+.+++...+..+ .+|.+.+ +.++|++|-.
T Consensus 63 ----~~~~~~~~~l~~~~~~~--~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~ 125 (216)
T 3fb4_A 63 ----VTIGIVHERLSKDDCQK--GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKV-EQEELMKRLT 125 (216)
T ss_dssp ----HHHHHHHHHHTSGGGTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcccCCC--cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHH
Confidence 1112233333 3366 8999998788888888888888777766 6777776 7788877644
No 24
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.91 E-value=1.6e-09 Score=101.98 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=72.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
.|+|+|+|||||||+|+.|++.+ + ..+++.|++++....... . ..+.+...+....+.+. .
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~----~--~~~i~~d~~~r~~~~~~~----------~-~~~~~~~~~~~g~~~~~--~ 62 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY----G--IPHISTGDMFRAAMKEET----------P-LGLEAKSYIDKGELVPD--E 62 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS----S--CCEEEHHHHHHHHHHTTC----------H-HHHHHHHHHTTTCCCCH--H
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CcEEeHHHHHHHHHhcCC----------H-HHHHHHHHHHCCCCCCH--H
Confidence 58899999999999999998753 2 346788888876543100 0 00011100001111111 1
Q ss_pred HHHHHHHHHHHHHH---HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhc
Q 009432 265 AYRSSMLKAFTRTL---DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNV 330 (535)
Q Consensus 265 ~~~q~llk~akkaL---k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNi 330 (535)
.+...+...| ..+. .+|+|+......++..+.+++...+..+ .+|.+.+ +.++|++|-.
T Consensus 63 ----~~~~~~~~~l~~~~~~~--~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~ 125 (216)
T 3dl0_A 63 ----VTIGIVKERLGKDDCER--GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQV-DKDVLMERLT 125 (216)
T ss_dssp ----HHHHHHHHHHTSGGGTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEEC-CGGGHHHHHH
T ss_pred ----HHHHHHHHHHhcccccC--CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEEC-CHHHHHHHHH
Confidence 1112223333 3366 8999997788888888888888777765 6777776 6677766543
No 25
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.88 E-value=6.8e-09 Score=92.13 Aligned_cols=118 Identities=21% Similarity=0.257 Sum_probs=69.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
++|+|+|+|||||||+|+.| +.+ | ..+++.||+++........ . ...+. ........
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~----g--~~~i~~~~~~~~~~~~~~~---------~--~~~~~-~~~~~~~~---- 58 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER----G--AKVIVMSDVVRKRYSIEAK---------P--GERLM-DFAKRLRE---- 58 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT----T--CEEEEHHHHHHHHHHHHC--------------CCHH-HHHHHHHH----
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC----C--CcEEEHhHHHHHHHHhcCC---------C--hhHHH-HHHHHHHh----
Confidence 58999999999999999999 542 2 3466778877754321000 0 00000 00000000
Q ss_pred HHHHHHHHHHHHHHH--HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 264 EAYRSSMLKAFTRTL--DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 264 e~~~q~llk~akkaL--k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
..-...+...+...| ..+. .||+|+. .....+..+.+++. ..+.+|.+.+ +.++|++|...
T Consensus 59 ~~~~~~~~~~~~~~l~~~~~~--~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~-~~~~~~~R~~~ 121 (179)
T 3lw7_A 59 IYGDGVVARLCVEELGTSNHD--LVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHS-PPKIRYKRMIE 121 (179)
T ss_dssp HHCTTHHHHHHHHHHCSCCCS--CEEEECC-CCHHHHHHHHHHHC---SCEEEEEEEC-CHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhcCCC--eEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEEC-CHHHHHHHHHh
Confidence 000112233345556 5566 8999997 77777777666553 5567788886 78888887654
No 26
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.87 E-value=3.4e-08 Score=90.34 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=70.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...+|+|+|++||||||+++.|++.+... |.....+..|. ++.... . ...|...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~d~~~-~~~~~~---------------------~---~~~~~~~ 57 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLDGDN-IRQGLN---------------------K---NLGFSPE 57 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHH-HTTTTT---------------------T---TCCSSHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEECChH-HHHHHh---------------------h---ccccccc
Confidence 45789999999999999999999876442 22221122222 111110 0 0112211
Q ss_pred HHHHHHHHHHHHHHHHH-HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 262 MEEAYRSSMLKAFTRTL-DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 262 ~ee~~~q~llk~akkaL-k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
........+...+ ..+ +.|. +++.+..+.....+..+.++++..++.+.+|++++ ++++|++|...
T Consensus 58 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~ 124 (179)
T 2pez_A 58 DREENVRRIAEVA-KLFADAGL--VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDA-PLHVCEQRDVK 124 (179)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTC--EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEEC-CHHHHHHHCTT
T ss_pred cHHHHHHHHHHHH-HHHHHCCC--EEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeC-CHHHHHHHHhh
Confidence 1111222222222 223 5665 77777666666666667777777787778888887 89999999654
No 27
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.86 E-value=4.6e-08 Score=89.92 Aligned_cols=130 Identities=19% Similarity=0.161 Sum_probs=91.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...+++|+|++|||||||++.+.. + . .+++.|.++ .... .. . +...
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~------~-~-~~~~~d~~~-g~~~---~~---------~-------------~~~~ 53 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK------P-T-EVISSDFCR-GLMS---DD---------E-------------NDQT 53 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC------G-G-GEEEHHHHH-HHHC---SS---------T-------------TCGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc------C-C-eEEccHHHH-HHhc---Cc---------c-------------cchh
Confidence 467999999999999999998541 2 2 234544332 1111 00 0 0111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHH
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDD 337 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEv 337 (535)
.....+..+...+...+..|. .+++|+++.....+++++.+|+.+.....++.++. +...|-.||. +.+++++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDE-Pt~~Ld~~~~~R~~~~~~~~v 130 (171)
T 4gp7_A 54 VTGAAFDVLHYIVSKRLQLGK--LTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNL-PEKVCQERNKNRTDRQVEEYV 130 (171)
T ss_dssp GHHHHHHHHHHHHHHHHHTTC--CEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHTCSSCCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCC--eEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeC-CHHHHHHHHhcccCCCCCHHH
Confidence 122234444445566778888 89999999999999999999999999999999985 5566666655 4789999
Q ss_pred HHHHhhccccC
Q 009432 338 IERMAGQWEEA 348 (535)
Q Consensus 338 Ie~M~krfE~~ 348 (535)
|.++..++...
T Consensus 131 i~~~~~~l~~~ 141 (171)
T 4gp7_A 131 IRKHTQQMKKS 141 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99888877654
No 28
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.86 E-value=7.2e-09 Score=95.08 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=70.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhh--hhccCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMV--MEYCYE 259 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv--~ey~y~ 259 (535)
+..+|+|+|.|||||||+|+.|++.+ + ..+++.|++++..... +. ..+ +.+..-+ .+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l----~--~~~i~~d~~~~~~~~~---~~-------~~~-~~i~~~~~~g~~~~~ 70 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY----G--YTHLSTGDLLRSEVSS---GS-------ARG-KKLSEIMEKGQLVPL 70 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHT---TC-------HHH-HHHHHHHHTTCCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh----C--CeEEcHHHHHHHHHHc---CC-------hHH-HHHHHHHHcCCcCCH
Confidence 44689999999999999999999875 2 2567888877653210 00 000 0010000 001111
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
...+..+...+...+..|. .||+|+......++..|...+.. ...+|.+++ ++++|++|.
T Consensus 71 ----~~~~~~~~~~i~~~~~~~~--~vi~d~~~~~~~~~~~~~~~~~~---~~~vi~l~~-~~e~~~~R~ 130 (196)
T 2c95_A 71 ----ETVLDMLRDAMVAKVNTSK--GFLIDGYPREVQQGEEFERRIGQ---PTLLLYVDA-GPETMTQRL 130 (196)
T ss_dssp ----HHHHHHHHHHHHHHTTTCS--CEEEESCCCSHHHHHHHHHHTCC---CSEEEEEEC-CHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhccccCC--cEEEeCCCCCHHHHHHHHHhcCC---CCEEEEEEC-CHHHHHHHH
Confidence 1223334444555566787 99999976676666655554422 225666766 778877764
No 29
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.85 E-value=6.5e-09 Score=95.58 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=70.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh-ccCchH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME-YCYEPE 261 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e-y~y~~e 261 (535)
+.+|+|+|+|||||||+|+.|++++ + ..+++.|++++.....-. ..+ +.+..-+.. ..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l----~--~~~i~~d~~~~~~~~~~~----------~~~-~~i~~~~~~g~~~~-- 72 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY----G--FTHLSTGELLREELASES----------ERS-KLIRDIMERGDLVP-- 72 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHHHHHHTC----------HHH-HHHHHHHHTTCCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh----C--CeEEcHHHHHHHHHHhCC----------HHH-HHHHHHHHcCCcCC--
Confidence 4589999999999999999999875 2 357788888765431000 000 001000000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV 330 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi 330 (535)
.......+.+.+...+..|. .||+|+.......+..|... .+..-.+|.+++ ++++|++|-.
T Consensus 73 -~~~~~~~~~~~i~~~~~~~~--~vi~dg~~~~~~~~~~l~~~---~~~~~~~i~l~~-~~~~~~~R~~ 134 (199)
T 2bwj_A 73 -SGIVLELLKEAMVASLGDTR--GFLIDGYPREVKQGEEFGRR---IGDPQLVICMDC-SADTMTNRLL 134 (199)
T ss_dssp -HHHHHHHHHHHHHHHTTSCS--CEEEETCCSSHHHHHHHHHH---TCCCSEEEEEEC-CHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcccccCc--cEEEeCCCCCHHHHHHHHHh---cCCCCEEEEEEC-CHHHHHHHHH
Confidence 11122333344455556677 99999988887776655432 222224666776 7888887754
No 30
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.83 E-value=7.1e-09 Score=94.73 Aligned_cols=120 Identities=20% Similarity=0.179 Sum_probs=70.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...+|+|+|.|||||||+|+.|++.+ | ..+++.|++++..... +. ..+ +.+..-+.......
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l----~--~~~i~~d~~~~~~~~~---~~-------~~~-~~i~~~~~~g~~~~- 64 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL----G--FKKLSTGDILRDHVAR---GT-------PLG-ERVRPIMERGDLVP- 64 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH----T--CEEECHHHHHHHHHHT---TC-------HHH-HHHHHHHHTTCCCC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----C--CeEecHHHHHHHHHHc---CC-------hHH-HHHHHHHHcCCcCC-
Confidence 45789999999999999999999865 2 3566888877654211 00 000 00100000000100
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhh
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARN 329 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RN 329 (535)
.. .+...+...|.. -+|+|+.......+..+..++.+.|+.+ .+|.+.+ ++++|++|-
T Consensus 65 -~~----~~~~~~~~~l~~----~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~-~~e~~~~R~ 123 (186)
T 3cm0_A 65 -DD----LILELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEV-PEEELVRRI 123 (186)
T ss_dssp -HH----HHHHHHHHHCCS----EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEEC-CHHHHHHHH
T ss_pred -HH----HHHHHHHHHhcC----CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHH
Confidence 01 111223333433 3899998877777777777777777644 6777877 778777653
No 31
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.82 E-value=9.1e-09 Score=97.40 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=69.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh-c-cCch
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME-Y-CYEP 260 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e-y-~y~~ 260 (535)
.++|+|+|+|||||||+|+.|++.+ + ..+++.||+++....+.. . . + +.+ ++... . .+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l----~--~~~i~~d~~~~~~~~~~~--~----~----g-~~i-~~~~~~g~~~~~ 65 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF----H--AAHLATGDMLRSQIAKGT--Q----L----G-LEA-KKIMDQGGLVSD 65 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHTTC--H----H----H-HHH-HHHHHTTCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----C--ceEEehhHHHHHHHHcCC--h----H----H-HHH-HHHHHCCCcCCH
Confidence 4689999999999999999999875 2 357788888775421100 0 0 0 000 00000 0 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhh
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARN 329 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RN 329 (535)
......+...+......|. .+|+|+......++..+.+++...+..+ .+|.+.+ +.++|++|-
T Consensus 66 ---~~~~~~l~~~l~~~~~~~~--~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~-~~e~~~~R~ 129 (220)
T 1aky_A 66 ---DIMVNMIKDELTNNPACKN--GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV-DDELLVARI 129 (220)
T ss_dssp ---HHHHHHHHHHHHHCGGGGS--CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccccCC--CeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence 1111112121111112455 7899985445666666666666666555 6777876 788888774
No 32
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.79 E-value=1.3e-08 Score=97.32 Aligned_cols=120 Identities=13% Similarity=0.201 Sum_probs=70.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
++|+|+|+|||||||+|+.|++.+ + ..+++.||+++....+ +. .. + +.+..-+....+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~l----g--~~~i~~dd~~r~~~~~---~~---~~----g-~~i~~~~~~g~~~~~-- 61 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKY----S--LAHIESGGIFREHIGG---GT---EL----G-KKAKEFIDRGDLVPD-- 61 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----T--CEEEEHHHHHHHHTTT---TC---HH----H-HHHHHHHTTTCCCCH--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh----C--CeEEchHHHHHHHHHc---CC---HH----H-HHHHHHHHcCCcCcH--
Confidence 379999999999999999999875 2 3577888887764211 00 00 0 001000000001100
Q ss_pred HHHHHHHHHHHHHHHHc--CCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhh
Q 009432 264 EAYRSSMLKAFTRTLDE--GNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARN 329 (535)
Q Consensus 264 e~~~q~llk~akkaLk~--G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RN 329 (535)
+.+...+...|.. |. .||+|+......++..+.++++..+..+ .+|.+.+ ++++|++|-
T Consensus 62 ----~~~~~~i~~~l~~~~g~--~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl 123 (223)
T 2xb4_A 62 ----DITIPMVLETLESKGKD--GWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILL-PREVAKNRI 123 (223)
T ss_dssp ----HHHHHHHHHHHHHHCTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcccCC--eEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence 1222334445555 87 8999986555566666666655556433 5677776 778888774
No 33
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.77 E-value=2.2e-08 Score=97.44 Aligned_cols=124 Identities=15% Similarity=0.072 Sum_probs=74.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
..+++|+|+|.|||||||+|+.|++.+ + ..+++.|++.+..... .. . ..+.+.+.+....+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~----g--~~~is~~~~~r~~~~~---~~-------~-~g~~i~~~~~~g~~~~ 89 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH----C--YCHLSTGDLLREAAEK---KT-------E-LGLKIKNIINEGKLVD 89 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHTTS---SS-------H-HHHHHHHHHHTTCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh----C--CeEEecHHHHHHHHhc---cc-------h-HHHHHHHHHhcCCCCc
Confidence 467899999999999999999999765 2 3577888888765321 00 0 0011111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhc
Q 009432 261 EMEEAYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNV 330 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNi 330 (535)
. + .+...+...|. .+. .+|+|+......+...|.+++...+..+ .+|.+.+ +.++|++|-.
T Consensus 90 ~--~----~~~~~~~~~l~~~~~~~--~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~-p~e~~~~Rl~ 154 (243)
T 3tlx_A 90 D--Q----MVLSLVDEKLKTPQCKK--GFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNV-PDEVLVNRIS 154 (243)
T ss_dssp H--H----HHHHHHHHHTTSGGGSS--EEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHH
T ss_pred H--H----HHHHHHHHHHhcccccC--CEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeC-CHHHHHHHHH
Confidence 1 1 11222333333 366 8999996667777777777777666654 5677776 6777777643
No 34
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.74 E-value=4.5e-08 Score=95.97 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=66.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhc--cc-cccccccccCCccCCcchhhh--hhhccC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVE--KV-EDSDVSKSSGSLRSKKPVTKM--VMEYCY 258 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e--~v-~~~~~sk~~g~~r~kk~l~kk--v~ey~y 258 (535)
.+|+|+|++||||||||+.|++.+ + ..+++.|++.....- .. ...... ..+.. .-+... ..+..|
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~----~--~~~i~~D~~~~~~~~~~~t~~~~~~e-~~~~~---~~~~~~~~~~~~~~ 71 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET----G--WPVVALDRVQCCPQIATGSGRPLESE-LQSTR---RIYLDSRPLTEGIL 71 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH----C--CCEEECCSGGGCGGGTTTTTCCCGGG-GTTCC---EECSCCCCGGGCSC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC----C--CeEEeccHHhccCCCccccCCCCHHH-HhCCC---eEEEeeeccccccc
Confidence 489999999999999999999875 2 246788987422110 00 000000 00000 000000 000012
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhh----cCceEEEEEEecCCHHHHHHhhc
Q 009432 259 EPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKR----SGYEVYILEATYKDPAGCAARNV 330 (535)
Q Consensus 259 ~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~----~G~~V~vIe~~~~d~e~ci~RNi 330 (535)
. ...+.+.+...+ +.+..|. .||+++... . .+..+++. .++.+.++.+.++..++|.+|..
T Consensus 72 ~---~~~f~~~~~~~i-~~~~~g~--~vIl~gg~~--~---~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~ 136 (253)
T 2ze6_A 72 D---AESAHRRLIFEV-DWRKSEE--GLILEGGSI--S---LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAK 136 (253)
T ss_dssp C---HHHHHHHHHHHH-HTTTTSS--EEEEEECCH--H---HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHH
T ss_pred c---HHHHHHHHHHHH-HHHhCCC--CeEEeccHH--H---HHHHHHhcccccccCceEEEEecchhHHHHHHHHH
Confidence 1 122333333444 5567787 777775432 1 23345555 67888888888744477777654
No 35
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.74 E-value=3.5e-08 Score=107.73 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=79.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...+|+|+|++||||||+|+.|++.+...| ....++..|.+ +....+ +..|...
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G-~~~~~ld~D~i-r~~l~~------------------------~~~f~~~ 424 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARG-RKVTLLDGDVV-RTHLSR------------------------GLGFSKE 424 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEECHHHH-HHHTCT------------------------TCCSSHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcC-CeEEEECchHh-hhhhcc------------------------cccccHH
Confidence 467899999999999999999999875543 33345454443 222111 0012211
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
........+...+...++.|. .||+|.++.....|..+.+++++. .+.+|.+.+ +.++|++|..+
T Consensus 425 er~~~l~~i~~~~~~~l~~G~--~VI~d~~~~~~~~r~~~~~~l~~~--d~~vV~L~~-~~e~~~~Rl~r 489 (546)
T 2gks_A 425 DRITNILRVGFVASEIVKHNG--VVICALVSPYRSARNQVRNMMEEG--KFIEVFVDA-PVEVCEERDVK 489 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHTTSCTT--CEEEEEEEC-CGGGHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCC--EEEEEcCCCCHHHHHHHHHHhhcC--CEEEEEEeC-CHHHHHHHhhc
Confidence 111122344445666778898 999999999988888888777653 356677776 78999999754
No 36
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.73 E-value=1.7e-07 Score=85.39 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=72.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
++|+|+|.+||||||+|+.|++.+...| . .+++.|+....... +.+.+-+....+.....
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g--~-~~i~~d~~~~~~~~-----------------~~i~~~~~~g~~~~~~~ 60 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKG--Y-FVSLYREPGGTKVG-----------------EVLREILLTEELDERTE 60 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTT--C-CEEEEESSCSSHHH-----------------HHHHHHHHHSCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC--C-eEEEEeCCCCCchH-----------------HHHHHHHcCCCCCHHHH
Confidence 3799999999999999999998764433 2 24454431110000 00100000011221111
Q ss_pred -----HHHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHH
Q 009432 264 -----EAYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCA 326 (535)
Q Consensus 264 -----e~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci 326 (535)
...++.+.+.+...++.|. .||+|. ..........+..+++.....-.+|.+.+ ++++|+
T Consensus 61 ~~~~~~~~~~~l~~~i~~~l~~~~--~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~-~~e~~~ 137 (195)
T 2pbr_A 61 LLLFEASRSKLIEEKIIPDLKRDK--VVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDI-PVDIAL 137 (195)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTC--EEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--EEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeC-CHHHHH
Confidence 1112333344556678888 999994 22333333333333332112335677776 788888
Q ss_pred HhhcC--CC-CHHHHHHHhhcccc
Q 009432 327 ARNVH--GF-TLDDIERMAGQWEE 347 (535)
Q Consensus 327 ~RNih--~V-peEvIe~M~krfE~ 347 (535)
+|-.. .. ..+.++++...|+.
T Consensus 138 ~Rl~~r~~~~~~~~~~~~~~~~~~ 161 (195)
T 2pbr_A 138 RRLKEKNRFENKEFLEKVRKGFLE 161 (195)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred HHhhccCccchHHHHHHHHHHHHH
Confidence 87543 12 45666666655554
No 37
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.72 E-value=4.8e-08 Score=90.75 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=69.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-hccCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-EYCYE 259 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-ey~y~ 259 (535)
....+|+|+|.|||||||+|+.|++.+ | ..+++.|++++...... .. ..+ + ..++.. ...+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~----g--~~~i~~d~~~~~~~~~~--~~-------~~~-~-~i~~~~~~g~~~ 75 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY----S--FVHLSAGDLLRAEQGRA--GS-------QYG-E-LIKNCIKEGQIV 75 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS----S--CEEEEHHHHHHHHHHST--TC-------SCH-H-HHHHHHHTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc----C--ceEEeHHHHHHHHHhcc--CC-------HHH-H-HHHHHHHcCCcC
Confidence 456799999999999999999999763 2 35678888776542100 00 000 0 111110 00111
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432 260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN 329 (535)
Q Consensus 260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN 329 (535)
+ ....+..+.+.+...+..|. ..+|+|+..........|...+.. .-.+|.+.+ +.++|++|-
T Consensus 76 ~--~~~~~~~l~~~i~~~l~~g~-~~~i~dg~~~~~~~~~~~~~~~~~---~~~~i~l~~-~~e~~~~Rl 138 (203)
T 1ukz_A 76 P--QEITLALLRNAISDNVKANK-HKFLIDGFPRKMDQAISFERDIVE---SKFILFFDC-PEDIMLERL 138 (203)
T ss_dssp C--HHHHHHHHHHHHHHHHHTTC-CEEEEETCCCSHHHHHHHHHHTCC---CSEEEEEEC-CHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHhhhccCC-CeEEEeCCCCCHHHHHHHHHhcCC---CCEEEEEEC-CHHHHHHHH
Confidence 1 11223344445566677773 278999876666655544433322 224566666 677776653
No 38
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.70 E-value=8.1e-08 Score=91.14 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=68.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-h-ccCchH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-E-YCYEPE 261 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-e-y~y~~e 261 (535)
++|+|+|+|||||||+|+.|++.+ + ..+++.|++++....+.. .. + +.+ ++.+ . ..+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l----~--~~~i~~d~li~~~~~~~t------~~----g-~~i-~~~~~~g~~~~~~ 67 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY----G--LAHLSTGDMLREAIKNGT------KI----G-LEA-KSIIESGNFVGDE 67 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHTC--------C----C-HHH-HHHHHHTCCCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----C--ceEEehhHHHHHHHHcCC------HH----H-HHH-HHHHHCCCcCCHH
Confidence 579999999999999999999875 2 357788888875432100 00 0 111 1111 0 011111
Q ss_pred HHHHHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCce-EEEEEEecCCHHHHHHhh
Q 009432 262 MEEAYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGYE-VYILEATYKDPAGCAARN 329 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~-V~vIe~~~~d~e~ci~RN 329 (535)
. ..+.+...|. .|. .||+|+......+...+.+++...+.. ..+|.+.+ +.++|++|-
T Consensus 68 ~-------~~~~i~~~l~~~~~~~--~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~-~~e~~~~Rl 129 (217)
T 3be4_A 68 I-------VLGLVKEKFDLGVCVN--GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEI-DDSEIIERI 129 (217)
T ss_dssp H-------HHHHHHHHHHTTTTTT--CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHH
T ss_pred H-------HHHHHHHHHhccccCC--CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence 1 1122223333 376 799998655555555555555555543 36777776 788887774
No 39
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.62 E-value=2.1e-07 Score=90.47 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=68.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP 260 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~ 260 (535)
.++.+|+|.|+|||||+|.|+.|++.+ + ...+|.+|++|.+...- . ..+ +.+...+......+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~----g--~~hIstGdllR~~i~~~--t--------~lg-~~~~~~~~~G~lVp 89 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF----H--FNHLSSGDLLRAEVQSG--S--------PKG-KELKAMMERGELVP 89 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH----C--CEEECHHHHHHHHHTTC--C--------HHH-HHHHHHHHHTCCCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH----C--CceEcHHHHHHHHHHcC--C--------chH-HHHHHHHhcCCCCC
Confidence 466789999999999999999999875 2 35668999998764310 0 001 11110000111111
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
.+.+...+.+.+.+...... -+|+|+-=-+..+...|.+.. .-...+|.+.+ +.+++++|-..
T Consensus 90 --de~~~~lv~~~l~~~~~~~~--g~ilDGfPRt~~Qa~~l~~~~---~~~~~vi~l~v-~~e~~~~Rl~~ 152 (217)
T 3umf_A 90 --LEVVLALLKEAMIKLVDKNC--HFLIDGYPRELDQGIKFEKEV---CPCLCVINFDV-SEEVMRKRLLK 152 (217)
T ss_dssp --HHHHHHHHHHHHHHHTTTCS--EEEEETBCSSHHHHHHHHHHT---CCCSEEEEEEC-CHHHHHHHHSC
T ss_pred --HHHHHHHHHHHHhhcccccc--CcccccCCCcHHHHHHHHHhC---CccCEEEeccC-CHHHHHHHHhc
Confidence 11122222233333333344 789999544455444433322 22235677777 77888887544
No 40
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.61 E-value=2.9e-07 Score=84.36 Aligned_cols=140 Identities=20% Similarity=0.193 Sum_probs=69.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
++|+|.|.+||||||+|+.|++.+.+.| . .++..++-..... + ..+.+-+....+.+...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g-~--~v~~~~~~~~~~~----------------g-~~~~~~~~~~~~~~~~~ 60 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRG-K--KVILKREPGGTET----------------G-EKIRKILLEEEVTPKAE 60 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCC-C---EEEEESSCSSHH----------------H-HHHHHHHHHSCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C--eEEEeeCCCCCcH----------------H-HHHHHHHHhcCCCHHHH
Confidence 3799999999999999999999875543 2 2332221000000 0 00000000111121111
Q ss_pred H-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHH
Q 009432 264 E-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCA 326 (535)
Q Consensus 264 e-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci 326 (535)
. ..++.+.+ +...+..|. .||+|. .+.....+..+..++......-.+|.+.+ ++++|+
T Consensus 61 ~~~~~~~r~~~~~~-i~~~l~~g~--~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~-~~e~~~ 136 (197)
T 2z0h_A 61 LFLFLASRNLLVTE-IKQYLSEGY--AVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDV-DVETAL 136 (197)
T ss_dssp HHHHHHHHHHHHHH-HTTC----C--EEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCC--EEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeC-CHHHHH
Confidence 1 11112222 444567788 999993 23455555555555554444446677776 788888
Q ss_pred HhhcC--C-CCHHHHHHHhhcccc
Q 009432 327 ARNVH--G-FTLDDIERMAGQWEE 347 (535)
Q Consensus 327 ~RNih--~-VpeEvIe~M~krfE~ 347 (535)
+|-.. . -..+.++++...|+.
T Consensus 137 ~Rl~~R~~~~~~~~~~~~~~~~~~ 160 (197)
T 2z0h_A 137 KRKGELNRFEKREFLERVREGYLV 160 (197)
T ss_dssp HHC---CCCCCHHHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHH
Confidence 87543 1 223566666666665
No 41
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.61 E-value=5.7e-07 Score=82.71 Aligned_cols=117 Identities=15% Similarity=0.019 Sum_probs=68.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
.+|+|+|++||||||+++.|+... +| ...++.|++......+. + .++... ...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~---~g--~~~i~~d~~~~~~~~~~-----------------~----~~~~~~-~~~ 55 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL---DN--SAYIEGDIINHMVVGGY-----------------R----PPWESD-ELL 55 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS---SS--EEEEEHHHHHTTCCTTC-----------------C----CGGGCH-HHH
T ss_pred eEEEEECCCCCcHHHHHHHHhccc---CC--eEEEcccchhhhhcccc-----------------c----cCccch-hHH
Confidence 589999999999999999998631 22 13344444432110000 0 000000 011
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHh--hcCceEEEEEEecCCHHHHHHhhcC
Q 009432 264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAK--RSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr--~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
..+++.+...+...+..+. .+|+|.+. ....++.+.++++ ..+..+.++.+.+ +++++++|...
T Consensus 56 ~~~~~~l~~~~~~~~~~~~--~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~-~~e~l~~R~~~ 121 (189)
T 2bdt_A 56 ALTWKNITDLTVNFLLAQN--DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWT-NREELLRRDAL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHTTC--EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEEC-CHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCC--cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeC-CHHHHHHHHHh
Confidence 1233344444455566777 89999864 5566666777654 3445676777775 88898888654
No 42
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.60 E-value=3.3e-07 Score=100.28 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=66.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...+|+|+|++|||||||++.|+..+...+|....++..|++...... ..+ |...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~---------~l~----------------f~~~ 422 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS---------ELG----------------FSKA 422 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS---------SCC----------------CSHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc---------ccC----------------CCHH
Confidence 557999999999999999999999875443322223444443321100 001 2211
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432 262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH 331 (535)
Q Consensus 262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih 331 (535)
........+...+......+. +||..........+..+.++++..| .+.+|++.+ +.++|.+|..+
T Consensus 423 ~r~~~~r~i~~v~q~l~~~~~--ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~-~~e~~~~R~~r 488 (552)
T 3cr8_A 423 HRDVNVRRIGFVASEITKNRG--IAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVAT-PIETCESRDRK 488 (552)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--EEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC------------
T ss_pred HHHHHHHHHHHHHHHHHhcCC--EEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcC-CHHHHHHhccc
Confidence 111112222223333445666 8888776656778888889998888 677888886 78999998643
No 43
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.56 E-value=1.4e-07 Score=90.48 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=74.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
++|||.|+|||||+|.|+.|++++ | ...+|.+|++|...... . ..+ +.+...+......++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~----g--~~~istGdllR~~i~~~--t--------~lg-~~~~~~~~~G~lvpd-- 61 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK----G--FVHISTGDILREAVQKG--T--------PLG-KKAKEYMERGELVPD-- 61 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHHT--C--------HHH-HHHHHHHHHTCCCCH--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH----C--CeEEcHHHHHHHHHHhc--C--------hhh-hhHHHHHhcCCcCCH--
Confidence 478999999999999999999875 2 34668899988764310 0 000 001000011111111
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhh
Q 009432 264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARN 329 (535)
Q Consensus 264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RN 329 (535)
+.+...+...|.... -+|+|+---+..+...|..+....+..+ .+|.+.+ +.+++++|-
T Consensus 62 ----~iv~~lv~~~l~~~~--~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v-~~e~l~~Rl 121 (206)
T 3sr0_A 62 ----DLIIALIEEVFPKHG--NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEV-PDEVVIERL 121 (206)
T ss_dssp ----HHHHHHHHHHCCSSS--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHH
T ss_pred ----HHHHHHHHHhhccCC--ceEecCCchhHHHHHHHHhhHHHhccccceeeecCC-CHHHHHHHH
Confidence 112334455565555 6899997777778777777778888766 6777777 667766653
No 44
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.55 E-value=3.1e-07 Score=82.11 Aligned_cols=23 Identities=35% Similarity=0.199 Sum_probs=21.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+|+|+|+|||||||+|+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999875
No 45
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.51 E-value=6.4e-07 Score=82.71 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+|+|+|+|||||||+|+.|++.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999876
No 46
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.50 E-value=2.8e-07 Score=83.69 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=30.3
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
.+|+|+|+|||||||+|+.|++.+... |....+++.|++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIINYGDFML 42 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEECChHHH
Confidence 479999999999999999999987533 22334445566554
No 47
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.50 E-value=1.8e-07 Score=89.64 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=66.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc--cCch
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY--CYEP 260 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey--~y~~ 260 (535)
.+.|+|.|.|||||||+|+.|++.+ + ..+++.||+++....+- .. . + +.+ +++... .+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l----~--~~~i~~d~li~~~~~~~--~~----~----g-~~i-~~~~~~g~~~~~ 77 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF----C--VCHLATGDMLRAMVASG--SE----L----G-KKL-KATMDAGKLVSD 77 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHHHHHHT--CH----H----H-HHH-HHHHHTTCCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----C--CceecHHHHHHHHHHcC--Ch----h----H-HHH-HHHHHCCCcCCH
Confidence 4589999999999999999999875 2 35678888876542210 00 0 0 000 111100 0111
Q ss_pred HHHHHHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCc-eEEEEEEecCCHHHHHHhh
Q 009432 261 EMEEAYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGY-EVYILEATYKDPAGCAARN 329 (535)
Q Consensus 261 e~ee~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~-~V~vIe~~~~d~e~ci~RN 329 (535)
+ .+...+...|. .|. .+|+|+......+...+.+++...+. .-.+|.+++ +.++|++|-
T Consensus 78 ~-------~~~~~i~~~l~~~~~~~--g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~-~~e~~~~Rl 140 (233)
T 1ak2_A 78 E-------MVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI-PDSLLIRRI 140 (233)
T ss_dssp H-------HHHHHHHHHHTSGGGTT--CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHH
T ss_pred H-------HHHHHHHHHHhcccccC--cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence 1 11122233333 244 68899854455666666666654443 336777776 778887774
No 48
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.47 E-value=6.2e-07 Score=86.82 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=67.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhcc---
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC--- 257 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~--- 257 (535)
....+|++.|++||||||+++.|++.+.. +. .++... .-.+ ..+-+.+.++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~---~~~~~~-----~p~~----------------~~~g~~i~~~~~~~ 78 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DY---DVIMTR-----EPGG----------------VPTGEEIRKIVLEG 78 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TS---CEEEEC-----TTTT----------------CHHHHHHHHHTTC-
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CC---Cceeec-----CCCC----------------CchHHHHHHHHhCC
Confidence 35679999999999999999999988643 21 122111 0000 00111111111
Q ss_pred --CchHHHHHHH-----HHHHHHHHHHHHcCCceEEEEe----------C--CCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432 258 --YEPEMEEAYR-----SSMLKAFTRTLDEGNFTIVIVD----------D--RNLRVADFAQFWATAKRSGYEVYILEAT 318 (535)
Q Consensus 258 --y~~e~ee~~~-----q~llk~akkaLk~G~f~~VIVD----------a--TN~~~~~R~~f~~LAr~~G~~V~vIe~~ 318 (535)
+.+......+ +.+.+.+..+|+.|. .||+| + .......+..+.+++...-.+-.+|.+.
T Consensus 79 ~~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g~--~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~ 156 (229)
T 4eaq_A 79 NDMDIRTEAMLFAASRREHLVLKVIPALKEGK--VVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLN 156 (229)
T ss_dssp --CCHHHHHHHHHHHHHHHCCCCCHHHHHTTC--EEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 1211111111 111112345678898 99999 4 3566666666666665444444677777
Q ss_pred cCCHHHHHHhhc
Q 009432 319 YKDPAGCAARNV 330 (535)
Q Consensus 319 ~~d~e~ci~RNi 330 (535)
+ ++++|++|-.
T Consensus 157 ~-~~e~~~~R~~ 167 (229)
T 4eaq_A 157 V-SAEVGRERII 167 (229)
T ss_dssp C-CHHHHHHHHH
T ss_pred C-CHHHHHHHHH
Confidence 6 7888887743
No 49
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.47 E-value=4e-07 Score=83.16 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=30.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..+|+|+|+|||||||+|+.|++.+ + ..+++.|+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l----~--~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT----K--RILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH----C--CCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh----C--CCEEEChHHHHH
Confidence 3478999999999999999999875 2 246677877554
No 50
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.46 E-value=2e-07 Score=88.76 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=31.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.+.+|+|+|+|||||||+|+.|++.+ + ..+++.|++++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l----~--~~~i~~d~~~~~~ 45 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF----E--LKHLSSGDLLRDN 45 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS----S--SEEEEHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc----C--CeEEechHHHHHh
Confidence 34689999999999999999999764 2 3567888887754
No 51
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=1.3e-07 Score=88.31 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=29.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..+|+|+|+|||||||+|+.|++.+ + . .+++.|+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l----~-~-~~i~~d~~~~~ 62 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL----N-V-PFIDLDWYIEE 62 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH----T-C-CEEEHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc----C-C-CEEcchHHHHH
Confidence 3489999999999999999999876 2 2 35577776543
No 52
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.44 E-value=1.6e-07 Score=85.33 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=32.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
..+|+|+|+|||||||+|+.|++.+...| ....+++.|++++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~i~~~~~~r~~ 46 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG-VNYKMVSFGSVMFEV 46 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT-CCCEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC-cceEEEehHHHHHHH
Confidence 35899999999999999999998764322 113566777776643
No 53
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.42 E-value=2.5e-07 Score=84.66 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=30.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+|+|+|+|||||||+|+.|++++ | ..+++.|++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l----g--~~~id~D~~~~~~ 40 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL----G--VGLLDTDVAIEQR 40 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH----T--CCEEEHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc----C--CCEEeCchHHHHH
Confidence 58999999999999999999875 2 2467888876643
No 54
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.38 E-value=1.5e-06 Score=80.58 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=24.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.+.+|+|+|.|||||||+|+.|++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999987643
No 55
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.34 E-value=1.3e-06 Score=81.03 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.++.+|+|+|+|||||||+|+.|++.+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999988744
No 56
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.31 E-value=1.6e-06 Score=81.79 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=30.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
.|+|+|.|||||||+|+.|++.+ + ..+++.||+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~----g--~~~i~~d~~~r~~ 38 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY----G--IPQISTGDMLRAA 38 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH----C--CCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----C--CeEEeHHHHHHHH
Confidence 58999999999999999999865 2 2466888888764
No 57
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.31 E-value=1.4e-06 Score=78.37 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=29.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+|+|+|.|||||||+|+.|++.+ | ..+++.|+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l----g--~~~id~d~~~~~ 39 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL----G--YEFVDTDIFMQH 39 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh----C--CcEEcccHHHHH
Confidence 69999999999999999999875 2 356688877654
No 58
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.29 E-value=1.2e-06 Score=82.80 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=31.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.+++|+|+|+|||||||+|+.|++.+ + ...++.|++++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l----~--~~~i~~d~~~~~ 42 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY----Q--LAHISAGDLLRA 42 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH----C--CEECCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----C--CceecHHHHHHH
Confidence 34689999999999999999999875 2 245677887765
No 59
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.29 E-value=2e-05 Score=75.77 Aligned_cols=143 Identities=16% Similarity=0.102 Sum_probs=78.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc---cC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY---CY 258 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey---~y 258 (535)
..++|++.|++||||||+++.|.+.+...| ..+ ++. +.... + ..| +.+.+-+... .+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~v-~~~-----~~p~~-------~-~~g-----~~i~~~l~~~~~~~~ 64 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERG-IEV-QLT-----REPGG-------T-PLA-----ERIRELLLAPSDEPM 64 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTT-CCE-EEE-----ESSCS-------S-HHH-----HHHHHHHHSCCSSCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCc-ccc-----cCCCC-------C-HHH-----HHHHHHHhcCCCCCC
Confidence 467999999999999999999999886543 221 211 10000 0 000 0000000000 11
Q ss_pred chHHHH-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEecCC
Q 009432 259 EPEMEE-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATYKD 321 (535)
Q Consensus 259 ~~e~ee-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d 321 (535)
.+..+. ..++.+.+.++.+|+.|. +||+|- ..........+..++...-.+-.+|.+++ +
T Consensus 65 ~~~~~~llf~a~R~~~~~~~i~p~l~~g~--~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~-~ 141 (213)
T 4edh_A 65 AADTELLLMFAARAQHLAGVIRPALARGA--VVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDL-P 141 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC-C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeC-C
Confidence 111111 122334445677889998 999994 22334555555555544444557788887 7
Q ss_pred HHHHHHhhcCC--------CCHHHHHHHhhcccc
Q 009432 322 PAGCAARNVHG--------FTLDDIERMAGQWEE 347 (535)
Q Consensus 322 ~e~ci~RNih~--------VpeEvIe~M~krfE~ 347 (535)
++++++|-... .+.+.+++..+.|+.
T Consensus 142 ~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~ 175 (213)
T 4edh_A 142 VEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQ 175 (213)
T ss_dssp HHHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcCcccccHHHHHHHHHHHHHH
Confidence 89888875431 134566666666653
No 60
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.28 E-value=6.4e-07 Score=80.38 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=29.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.|+|+|.|||||||+|+.|++.+ + ..+++.|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l----~--~~~i~~d~~~~~ 37 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL----N--IPFYDVDEEVQK 37 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH----T--CCEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh----C--CCEEECcHHHHH
Confidence 69999999999999999999875 2 246677877654
No 61
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.26 E-value=3e-06 Score=84.34 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=31.8
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
...+.+|+|+|.+||||||+|+.|++ + | ..+++.|++.+.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~-l----g--~~~id~D~~~~~ 111 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN-L----G--AYIIDSDHLGHR 111 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH-H----T--CEEEEHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-C----C--CcEEehhHHHHH
Confidence 45678999999999999999999994 2 2 357788887543
No 62
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.25 E-value=1.4e-07 Score=88.52 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.5
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+....+|+|+|+|||||||+++.|++.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566789999999999999999998763
No 63
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.19 E-value=2.5e-06 Score=80.95 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=34.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
....+|.|+|.+||||||+|+.|++.+ | ..+++.|++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l----g--~~vid~D~~~~~~ 50 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY----G--AHVVNVDRIGHEV 50 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc----C--CEEEECcHHHHHH
Confidence 457899999999999999999999864 2 4678999997654
No 64
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.18 E-value=3.8e-05 Score=75.34 Aligned_cols=140 Identities=18% Similarity=0.139 Sum_probs=75.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc-----
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY----- 256 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey----- 256 (535)
+..+|++.|++||||||+++.|.+.+...+ ....++. +... + ..+-+.+.++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~-~~~~~~~-----rep~-~----------------t~~g~~ir~~l~~~~ 82 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG-IDHITRT-----REPG-G----------------TLLAEKLRALVKEEH 82 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTT-CCCEEEE-----ESSC-S----------------SHHHHHHHHHHHSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC-CCeeeee-----cCCC-C----------------CHHHHHHHHHHhhCC
Confidence 457999999999999999999999886543 2212211 1100 0 0000111111
Q ss_pred ---cCchHHHH-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEE
Q 009432 257 ---CYEPEMEE-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILE 316 (535)
Q Consensus 257 ---~y~~e~ee-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe 316 (535)
.+.+..+. ..++.+.+.++.+|+.|. +||+|- .....+....+.+++...-.+-.+|.
T Consensus 83 ~~~~~~~~~e~lLf~A~R~~~~~~~I~paL~~g~--~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~ 160 (236)
T 3lv8_A 83 PGEELQDITELLLVYAARVQLVENVIKPALARGE--WVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLY 160 (236)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC--EEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEE
Confidence 12211111 123334445677889999 999993 22334444444444433223346777
Q ss_pred EecCCHHHHHHhhcC--------CCCHHHHHHHhhcccc
Q 009432 317 ATYKDPAGCAARNVH--------GFTLDDIERMAGQWEE 347 (535)
Q Consensus 317 ~~~~d~e~ci~RNih--------~VpeEvIe~M~krfE~ 347 (535)
+++ +++++++|-.. ....+..++..+.|+.
T Consensus 161 Ldv-~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~ 198 (236)
T 3lv8_A 161 LDI-DPKLGLERARGRGELDRIEKMDISFFERARERYLE 198 (236)
T ss_dssp EEC-CHHHHHHC-----CCCTTTTSCHHHHHHHHHHHHH
T ss_pred EeC-CHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHH
Confidence 777 78888876432 1234566666666543
No 65
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.17 E-value=1.1e-05 Score=73.86 Aligned_cols=133 Identities=19% Similarity=0.155 Sum_probs=67.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE 261 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e 261 (535)
...+|+|+|++|||||||++.|+..+ +.....++.|+++.....+ ....|.....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~---------------------~~~~~~~~~~ 62 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHG---------------------RIDPWLPQSH 62 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSS---------------------CCCTTSSSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcc---------------------cccCCccchh
Confidence 45789999999999999999998641 1112234555543211000 0001111111
Q ss_pred H-HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----CCCH
Q 009432 262 M-EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-----GFTL 335 (535)
Q Consensus 262 ~-ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-----~Vpe 335 (535)
. ....++.+...+......|. .+++|..... ..+..+ +..+..+.++.+.+ +.+++++|-.. -...
T Consensus 63 ~~~~~v~~~l~~~~~~~~~~~~--~~~~~~~~~~-~~l~~~----~~~~~~~~~ls~~~-~~~v~~~R~~~r~~~~lld~ 134 (191)
T 1zp6_A 63 QQNRMIMQIAADVAGRYAKEGY--FVILDGVVRP-DWLPAF----TALARPLHYIVLRT-TAAEAIERCLDRGGDSLSDP 134 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC--EEEECSCCCT-TTTHHH----HTTCSCEEEEEEEC-CHHHHHHHHHTTCTTSCCCH
T ss_pred hhhHHHHHHHHHHHHHHhccCC--eEEEeccCcH-HHHHHH----HhcCCCeEEEEecC-CHHHHHHHHHhcCCCccCCH
Confidence 1 11122222222333345666 7889985432 222222 22244555666765 67777776543 1245
Q ss_pred HHHHHHhhcccc
Q 009432 336 DDIERMAGQWEE 347 (535)
Q Consensus 336 EvIe~M~krfE~ 347 (535)
+.++.+++.++.
T Consensus 135 ~~~~~~~~~~~~ 146 (191)
T 1zp6_A 135 LVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 666666665543
No 66
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.16 E-value=4.2e-06 Score=81.15 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHc----CCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN----GGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~----gG~~~rIlS~DDyfr~ 226 (535)
..+++|.|+|.+||||||+|+.|++.+... .+..+.+++.|+|++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~ 69 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence 356899999999999999999999864210 0112347899999874
No 67
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.15 E-value=9.7e-06 Score=79.15 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=73.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHc----CCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN----GGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY 256 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~----gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey 256 (535)
.+.++|++.|++||||||+++.|++.+... | ..+ ++ .+... + + .. + +.+.+-+...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g-~~v-~~-----~rep~-~------t-~~----g-~~ir~~l~~~ 82 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAG-RHV-VV-----TREPG-G------T-RL----G-ETLREILLNQ 82 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGT-CCE-EE-----EESSS-S------S-HH----H-HHHHHHHHHS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccc-eee-ee-----ecCCC-C------C-hH----H-HHHHHHHHcC
Confidence 356799999999999999999999987643 3 111 11 11110 0 0 00 0 1111111111
Q ss_pred cCchHHH-----HHHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 257 CYEPEME-----EAYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 257 ~y~~e~e-----e~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
.+.+..+ ...++.+.+.++.+|+.|. +||+|- .....++...+.+++...-.+-.+|.+++
T Consensus 83 ~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~--~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv 160 (227)
T 3v9p_A 83 PMDLETEALLMFAGRREHLALVIEPALARGD--WVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDV 160 (227)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC--EEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 1222221 1122334445677889998 999993 22344555555555543334557778887
Q ss_pred CCHHHHHHhhcCC-----C---CHHHHHHHhhcccc
Q 009432 320 KDPAGCAARNVHG-----F---TLDDIERMAGQWEE 347 (535)
Q Consensus 320 ~d~e~ci~RNih~-----V---peEvIe~M~krfE~ 347 (535)
+++++++|-... . +.+.+++..+.|+.
T Consensus 161 -~~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~ 195 (227)
T 3v9p_A 161 -PPQIASARRGAVRMPDKFESESDAFFARTRAEYLR 195 (227)
T ss_dssp -CSSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHH
Confidence 667777764431 1 23455555555543
No 68
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.12 E-value=2.7e-06 Score=77.56 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=30.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
...+|+|+|+|||||||+|+.|++.+ + ..+++.|++++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~----~--~~~~~~d~~~~~ 48 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS----G--LKYINVGDLARE 48 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh----C--CeEEEHHHHHhh
Confidence 34578899999999999999999875 2 356677877554
No 69
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.10 E-value=6.9e-06 Score=77.96 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhhc
Q 009432 270 MLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAGQ 344 (535)
Q Consensus 270 llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~kr 344 (535)
..+.+...|++|+ .||+|-. ++-..++-+.++..+++|.+..++.+++.+|-.. .-+++.|++...+
T Consensus 81 ~~~~v~~~l~~g~--~vil~id------~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~ 149 (186)
T 1ex7_A 81 TVASVKQVSKSGK--TCILDID------MQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSA 149 (186)
T ss_dssp EHHHHHHHHHHTS--EEEEECC------HHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred ecceeeehhhCCC--EEEecCC------HHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445677889999 9999862 2333334344455555666654567776665443 4567777655443
No 70
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.08 E-value=1.1e-05 Score=74.49 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=33.1
Q ss_pred CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+......+|+|+|.|||||||+|+.|++.+ . | ..+++.|++.+.
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l--~-g--~~~id~d~~~~~ 48 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAEL--D-G--FQHLEVGKLVKE 48 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHHS--T-T--EEEEEHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHhc--C-C--CEEeeHHHHHHH
Confidence 344556789999999999999999999762 1 2 356688887664
No 71
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.03 E-value=0.00011 Score=69.57 Aligned_cols=140 Identities=21% Similarity=0.208 Sum_probs=73.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
++|++-|+-||||||.++.|++++.+.| ..+ ++. .+-.+. .....+.+-+......+..+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g-~~v-~~t------reP~~t------------~~~~~ir~~l~~~~~~~~~~ 60 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRG-KKV-ILK------REPGGT------------ETGEKIRKILLEEEVTPKAE 60 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTT-CCE-EEE------ESSCSS------------HHHHHHHHHHHHSCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CcE-EEE------ECCCCC------------cHHHHHHHHhhcccCChHHH
Confidence 4789999999999999999999987654 222 211 110000 00001111111111222111
Q ss_pred ----HHHHHHHHHHHHHHHHcCCceEEEEeCC------------CCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432 264 ----EAYRSSMLKAFTRTLDEGNFTIVIVDDR------------NLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA 327 (535)
Q Consensus 264 ----e~~~q~llk~akkaLk~G~f~~VIVDaT------------N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~ 327 (535)
.+.+....+.+..+|+.|. +||+|-- .........+...+...=.+-.++.+++ +++++++
T Consensus 61 ~ll~~a~r~~~~~~I~~~L~~g~--~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~-~~e~~~~ 137 (197)
T 3hjn_A 61 LFLFLASRNLLVTEIKQYLSEGY--AVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDV-DVETALK 137 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC--EEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--eEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCc-ChHHHHH
Confidence 1123334455777899999 9999942 2223333444444433223346667776 7899888
Q ss_pred hhcC---CCCHHHHHHHhhccc
Q 009432 328 RNVH---GFTLDDIERMAGQWE 346 (535)
Q Consensus 328 RNih---~VpeEvIe~M~krfE 346 (535)
|... --..+..++..+.|.
T Consensus 138 R~~~~dr~e~~ef~~rv~~~y~ 159 (197)
T 3hjn_A 138 RKGELNRFEKREFLERVREGYL 159 (197)
T ss_dssp HC---CTTCCHHHHHHHHHHHH
T ss_pred hCcCcCccccHHHHHHHHHHHH
Confidence 8543 123455555544444
No 72
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.01 E-value=5e-06 Score=75.58 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=29.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.|+|+|+|||||||+|+.|++.+ + ..+++.|++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l----~--~~~~d~d~~~~~ 41 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL----D--LVFLDSDFLIEQ 41 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc----C--CCEEcccHHHHH
Confidence 58899999999999999999875 2 346677776653
No 73
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.01 E-value=6.5e-06 Score=74.08 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=28.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..+|+|+|.+||||||+++.|+..+ + ..+++.|+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l----~--~~~id~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL----N--MEFYDSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT----T--CEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh----C--CCEEeccHHHH
Confidence 3479999999999999999999864 2 24556665543
No 74
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.99 E-value=7.3e-05 Score=72.04 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=75.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh------c
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME------Y 256 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e------y 256 (535)
..+|++.|++||||||+++.|.+.+...| ....++. +... +. ..| +.+.+-+.. .
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~-----rep~-~t-------~~g-----~~ir~~l~~~~~~~~~ 63 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFT-----REPG-GT-------QLA-----EKLRSLLLDIKSVGDE 63 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEE-----ESSC-SS-------HHH-----HHHHHHHHSTTTTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceee-----eCCC-CC-------HHH-----HHHHHHHhcccccccc
Confidence 46899999999999999999999886653 2111211 1100 00 000 000000000 0
Q ss_pred cCchHHHH-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 257 CYEPEMEE-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 257 ~y~~e~ee-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
...+..+. .-++.+.+.++.+|+.|. +||+|- ......+...+..++...-.+-.+|.+++
T Consensus 64 ~~~~~~e~lL~~A~R~~~~~~~i~paL~~g~--~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv 141 (213)
T 4tmk_A 64 VITDKAEVLMFYAARVQLVETVIKPALANGT--WVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDV 141 (213)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeC
Confidence 11111111 122333345677899999 999994 22334455555555543334446777887
Q ss_pred CCHHHHHHhhcC--------CCCHHHHHHHhhcccc
Q 009432 320 KDPAGCAARNVH--------GFTLDDIERMAGQWEE 347 (535)
Q Consensus 320 ~d~e~ci~RNih--------~VpeEvIe~M~krfE~ 347 (535)
+++++++|-.. ....+.+++..+.|+.
T Consensus 142 -~~e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~ 176 (213)
T 4tmk_A 142 -TPEVGLKRARARGELDRIEQESFDFFNRTRARYLE 176 (213)
T ss_dssp -CHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHH
Confidence 77877665321 2245556666655553
No 75
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.92 E-value=4e-05 Score=70.13 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+|+|+|.+||||||+|+.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 79999999999999999999875
No 76
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.91 E-value=1.1e-05 Score=72.81 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=29.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..|+|+|.|||||||+|+.|++++ | . .+++.|++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l----g-~-~~id~D~~~~~ 44 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL----K-L-EVLDTDMIISE 44 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH----T-C-CEEEHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----C-C-CEEEChHHHHH
Confidence 479999999999999999999875 2 2 46677877654
No 77
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.90 E-value=6.2e-05 Score=70.71 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=30.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.+++|+|+|.+||||||+|+.|++ + | ..+++.|++.+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g--~~~id~D~~~~~ 40 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----G--INVIDADIIARQ 40 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----T--CEEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----C--CEEEEccHHHHH
Confidence 468999999999999999999986 2 2 356788877654
No 78
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.88 E-value=6.5e-05 Score=69.16 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...+|+|+|.+|||||||++.|...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999875
No 79
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.86 E-value=9.1e-07 Score=83.58 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
....+|+|+|++||||||+++.|...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34568999999999999999999875
No 80
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.85 E-value=2.8e-05 Score=76.46 Aligned_cols=40 Identities=33% Similarity=0.494 Sum_probs=31.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV 228 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~ 228 (535)
.+-+.|.|.|||||||+|+.|++.+ + ..+++.+|+++...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~----g--~~~is~gdllR~~~ 47 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF----G--IPQISTGDMLRAAV 47 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH----T--CCEECHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh----C--CCeeechHHHHHhc
Confidence 4567899999999999999999875 2 34668999988754
No 81
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.81 E-value=1.7e-05 Score=73.44 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=29.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+|+|+|.+||||||+++.|++ + | ..+++.|++.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~----g--~~~i~~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L----G--AYVLDADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T----T--CEEEEHHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-C----C--CEEEEccHHHHH
Confidence 799999999999999999997 3 2 457788887654
No 82
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.80 E-value=0.00022 Score=68.01 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=64.5
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh-ccCchHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME-YCYEPEM 262 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e-y~y~~e~ 262 (535)
..|++-|+.||||||+++.|++++. . |.. .++.. +-.+. .+| ..+.+-+.. -.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~-~~~-v~~~~------eP~~t-------~~g-----~~ir~~l~~~~~~~~~~ 61 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-K-DYD-VIMTR------EPGGV-------PTG-----EEIRKIVLEGNDMDIRT 61 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-T-TSC-EEEEE------SSTTC-------HHH-----HHHHHHHHSSCCCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-C-CCC-EEEee------CCCCC-------hHH-----HHHHHHHhcccCCCHHH
Confidence 4789999999999999999999873 2 222 22111 00000 000 000000000 0011111
Q ss_pred HH-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHH
Q 009432 263 EE-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGC 325 (535)
Q Consensus 263 ee-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~c 325 (535)
+. ..++.+.+.+..+|+.|. +||+|- ..........+..++...=.+=.+|.+++ ++++|
T Consensus 62 ~~lLf~a~R~~~~~~~i~p~l~~g~--~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~-~~e~~ 138 (205)
T 4hlc_A 62 EAMLFAASRREHLVLKVIPALKEGK--VVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNV-SAEVG 138 (205)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--EEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCC-CHHHH
Confidence 11 112234445677889999 999994 12234444445544433223336777776 88999
Q ss_pred HHhhc
Q 009432 326 AARNV 330 (535)
Q Consensus 326 i~RNi 330 (535)
++|-.
T Consensus 139 ~~Ri~ 143 (205)
T 4hlc_A 139 RERII 143 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88853
No 83
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.79 E-value=1.3e-06 Score=80.65 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+|+|+|++|||||||++.|...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 348999999999999999999875
No 84
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.78 E-value=0.00016 Score=70.47 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=26.4
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
....++|++.|++||||||+++.|.+.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999998865
No 85
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.76 E-value=1.4e-05 Score=74.18 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
+|+|+|++||||||+|+.|.+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999988743
No 86
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.74 E-value=0.00015 Score=66.75 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...+|+|+|.+||||||+++.|...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999875
No 87
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.72 E-value=8.7e-05 Score=68.96 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=28.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.+|.|+|.+||||||+++.|+. + | ..+++.|++.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l----g--~~~id~d~~~~~ 38 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L----G--VPLVDADVVARE 38 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T----T--CCEEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C----C--CcccchHHHHHH
Confidence 5899999999999999999985 2 3 235688887653
No 88
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.66 E-value=6e-05 Score=69.58 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+|+|+|++|||||||++.|...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999764
No 89
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.66 E-value=5.7e-05 Score=74.58 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=29.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.+|+|+|.+||||||+++.|++.+ | ..++..|++++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l----g--~~~~d~d~~~~~ 85 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL----G--YTFFDCDTLIEQ 85 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc----C--CcEEeCcHHHHH
Confidence 379999999999999999999875 2 246677776654
No 90
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.61 E-value=0.00045 Score=71.54 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=30.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
++.+|+|+|++||||||||..|++.+ ...|++.|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l------~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF------PLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS------CEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC------CCcEEccccc
Confidence 45699999999999999999999764 2368898887
No 91
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.54 E-value=0.00024 Score=68.49 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=37.7
Q ss_pred HHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHH
Q 009432 273 AFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERM 341 (535)
Q Consensus 273 ~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M 341 (535)
.+.+.|+.|. ++|+| ++...+.+++++..+ + +.++.++ .+.+++.+|-.. .-+.+.|.+.
T Consensus 100 ~v~~~l~~G~--illLD---LD~~~~~~i~~~l~~-~--~tI~i~t-h~~~~l~~Rl~~rG~~~~e~i~~r 161 (219)
T 1s96_A 100 AIEQVLATGV--DVFLD---IDWQGAQQIRQKMPH-A--RSIFILP-PSKIELDRRLRGRGQDSEEVIAKR 161 (219)
T ss_dssp HHHHHHTTTC--EEEEE---CCHHHHHHHHHHCTT-C--EEEEEEC-SSHHHHHHHHHTTSCSCHHHHHHH
T ss_pred HHHHHHhcCC--eEEEE---ECHHHHHHHHHHccC-C--EEEEEEC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3567788898 99999 888899888887762 2 3333333 366665554322 2355555543
No 92
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.48 E-value=0.00021 Score=73.39 Aligned_cols=36 Identities=31% Similarity=0.294 Sum_probs=29.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
+.+|+|+|++||||||||+.|++.+ + ..+++.|.+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l---~---~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL---P---CELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS---C---EEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---C---CcEEeccchh
Confidence 4589999999999999999999864 1 3677888764
No 93
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.42 E-value=0.00077 Score=65.37 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCCCCCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 176 HRATRPDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 176 ~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+|+....+.+|.|.|.+||||||+|+.|++++
T Consensus 7 ~~~m~~~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 7 GRFMGNKNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCCCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 45555567899999999999999999999876
No 94
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.42 E-value=0.0007 Score=65.51 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=29.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
-..|.|+|..||||||+|+.|.+. | ..+++.|.+.+.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~~-----g--~~vidaD~ia~~ 45 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAAR-----G--ASLVDTDLIAHR 45 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHT-----T--CEEEEHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHHC-----C--CcEEECcHHHHH
Confidence 357999999999999999999862 3 357798987654
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.39 E-value=0.00032 Score=63.85 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...++|+|.+|+||||||+.|+..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999988764
No 96
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.31 E-value=0.00082 Score=64.87 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=33.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..++||+++|.|||||+|+|+.|.+.+ |...+.++++.|..+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~---g~~~~~vv~msD~iK~ 51 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL---GADVCAVLRLSGPLKE 51 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH---CTTTEEEECTHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc---CCCCceEEEccHHHHH
Confidence 356799999999999999999998754 2223567788887663
No 97
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.30 E-value=0.00089 Score=71.58 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=35.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
.+.+|+|+|++||||||++..|+.++... |..+.++..|-++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcch
Confidence 58999999999999999999999888765 45666777776543
No 98
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.28 E-value=0.00039 Score=69.26 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+..|+|.|.||+|||+||+.|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678889999999999999999875
No 99
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.25 E-value=0.00012 Score=68.71 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=30.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..+|.|+|.+||||||+|+.|++.+ | ..+++.|++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~----g--~~~~d~g~i~~~ 42 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL----Q--WHLLDSGAIYRV 42 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----C--CCcccCcceeeh
Confidence 4589999999999999999999764 2 346688888774
No 100
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.25 E-value=0.00029 Score=65.91 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=34.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
....+|.|+|.+||||||+++.|...+...++ .+.+++.|++...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~-~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI-SVCVFHMDDHIVE 64 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEEGGGGCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC-eEEEeccCcccCC
Confidence 45689999999999999999999987755444 3455567776654
No 101
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.23 E-value=0.00013 Score=73.24 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=31.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
++.+|.|+|.+||||||+|+.|++.+... +..+.+++.|+|++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEeecchhhc
Confidence 45689999999999999999999876432 23357889999986
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.16 E-value=0.0014 Score=60.52 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=28.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
..+++|.|.+|||||||++.|+..+...++ .+.+++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGD-PCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTC-CEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-eEEEEEccc
Confidence 348899999999999999999866555444 344555544
No 103
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.0026 Score=59.65 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=28.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
..+++|+|.|||||||||.+++......++ .+..++.++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-PGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEEccC
Confidence 348999999999999999988766555543 444555554
No 104
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.16 E-value=0.0002 Score=66.62 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=32.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
....+|+|+|.+||||||+|+.|++.+ ....+++.|+++..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~-----~~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL-----PNCSVISQDDFFKP 59 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS-----TTEEEEEGGGGBCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc-----CCcEEEeCCccccC
Confidence 346789999999999999999998642 02467788988764
No 105
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.13 E-value=0.00022 Score=65.50 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=23.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...+|+|+|.+||||||+|+.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999763
No 106
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.12 E-value=0.00046 Score=64.74 Aligned_cols=44 Identities=30% Similarity=0.498 Sum_probs=33.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
....+|.|+|.+|||||||++.|...+... |....+++.|++..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMDGFHL 63 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecCCCcC
Confidence 467899999999999999999999887533 22344667777654
No 107
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.12 E-value=0.0032 Score=61.60 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
..-|+|+|.||+||||+|+.|+..+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 446899999999999999999987654
No 108
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.10 E-value=0.0026 Score=59.67 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=26.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
..+++++|.||+|||+||.+++......++..+.+++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 349999999999999999987654222334444455543
No 109
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.10 E-value=0.00095 Score=63.22 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=23.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.+|.|.|.+||||||+|+.|++++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 110
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.07 E-value=0.0004 Score=69.84 Aligned_cols=47 Identities=28% Similarity=0.424 Sum_probs=35.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcC-CCCcEEE-eCCceeee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENG-GDAPRIH-SMDDYFMT 226 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g-G~~~rIl-S~DDyfr~ 226 (535)
...+.+|.|+|.+||||||||+.|...+...+ .....++ +.|+|+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~ 76 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT 76 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCC
Confidence 35678999999999999999999998875421 0123444 99998764
No 111
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.06 E-value=0.0011 Score=62.83 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=16.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHH-HH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLR-DL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~-e~ 206 (535)
...+|+|+|.+|||||||++.|+ ..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34589999999999999999998 75
No 112
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.05 E-value=0.0023 Score=66.46 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=29.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
...+++|.|.|||||||||..++..+...++ .+..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg-~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGG-VAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEeccc
Confidence 3469999999999999999999887655544 333444443
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.02 E-value=0.0015 Score=60.44 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=21.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+++|+|.|||||||||+.|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999986
No 114
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.0021 Score=62.28 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|+|.||+||||+|+.|+..+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 358899999999999999998763
No 115
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.00 E-value=0.0012 Score=70.20 Aligned_cols=44 Identities=30% Similarity=0.306 Sum_probs=35.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
..+.+|+|+|++||||||++..|+..+...| ..+.++..|-++.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-YKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTT-CCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEecCccch
Confidence 4578999999999999999999998887764 4556667775543
No 116
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.00 E-value=0.0012 Score=61.37 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|.+|||||||++.|+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999864
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.99 E-value=0.0036 Score=64.44 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=28.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
..+++|.|.|||||||||.+++......++ .+..++.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~-~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGG-IAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEECCC
Confidence 338999999999999999999876655543 344455544
No 118
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.95 E-value=0.0007 Score=69.35 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=36.6
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceeeeh
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr~~ 227 (535)
...+.+|.|+|.+||||||||+.|...+... ++..+.+++.|++....
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~ 137 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN 137 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch
Confidence 4578899999999999999999998875321 12346678999887543
No 119
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.94 E-value=0.00066 Score=63.06 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=30.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
....+|.|+|.+|||||||++.|...+.. ...+++.|.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCcccc
Confidence 45679999999999999999999986521 234667776654
No 120
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.93 E-value=0.0028 Score=61.60 Aligned_cols=36 Identities=8% Similarity=-0.198 Sum_probs=27.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEE
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH 218 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIl 218 (535)
...+++++|.+||||||++..++..+...| ..+.++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-VKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 356999999999999999988877765553 344444
No 121
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.93 E-value=0.00057 Score=70.75 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=30.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+.+|+|+|.+||||||||+.|++.+ + ..|++.|++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l----~--~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKF----N--GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT----T--EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHc----C--Cceeccccc
Confidence 3689999999999999999999874 1 468899998
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.93 E-value=0.002 Score=60.62 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+++|+|.+|||||||++.|+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 344899999999999999999884
No 123
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.93 E-value=0.0003 Score=64.65 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=30.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE 227 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~ 227 (535)
+|.|+|.+||||||+|+.|++.+ | ..+++.|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l----g--~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL----G--VPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----T--CCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc----C--CceeccchHHHhh
Confidence 89999999999999999999865 2 3466888887653
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.91 E-value=0.0019 Score=57.06 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
+..|+|+|.||+||||+|+.+++.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999998764
No 125
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.90 E-value=0.0046 Score=64.26 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=28.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+|+|.|.|||||||||..++......++ .+..++.+.-
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~-~vlyi~~E~s 113 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGG-TCAFIDAEHA 113 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCC-eEEEEECCCC
Confidence 7888999999999999998876655443 4555565543
No 126
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00056 Score=62.59 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
.++.+|+|+|.+||||||+|+.|++. | ..+++.|++.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-----g--~~~id~d~~~~~ 44 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-----G--YPVLDLDALAAR 44 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-----T--CCEEEHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-----C--CEEEcccHHHHH
Confidence 35679999999999999999999863 2 246788887654
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.89 E-value=0.0027 Score=59.58 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+++|+|.||||||||++.|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 348999999999999999999863
No 128
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.87 E-value=0.00038 Score=68.22 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
..+++|+|.|++||||||+|+.|++.+ + ..+++.|++++.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~l----g--~~~~d~g~~~r~ 46 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARAL----G--ARYLDTGAMYRI 46 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----C--CCcccCCcHHHH
Confidence 456799999999999999999999875 2 356688887655
No 129
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.87 E-value=0.0028 Score=60.20 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+.-|+|+|.||+||||+|+.|+..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34468899999999999999999764
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.84 E-value=0.0049 Score=63.76 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=28.5
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
.+++|.|.|||||||||..|+......++ .+..++...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~-~vlyid~E~ 101 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEH 101 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 38999999999999999998876655443 444555543
No 131
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.84 E-value=0.00013 Score=69.92 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...+|+|+|++|||||||++.|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999875
No 132
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.82 E-value=0.00059 Score=65.49 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
++.+|+|+|.+||||||+++.|++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999875
No 133
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.82 E-value=0.0077 Score=59.18 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=27.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM 220 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~ 220 (535)
..+++|+|.||||||||++.|+..+....|..+.+++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34899999999999999999988765442323334443
No 134
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.82 E-value=0.0032 Score=64.66 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=29.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
.+.+|+|+|++||||||||..|++.+ ...|+|.|.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~------~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL------PVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS------CEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC------CCcEEecccc
Confidence 45789999999999999999999864 2467888864
No 135
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.81 E-value=0.0032 Score=60.86 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+..+|++.|++||||||+++.|.+.+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 136
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.79 E-value=0.0027 Score=65.30 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=29.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+.+|+|+|++||||||||..|++.+ ...|+|.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~------~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL------NGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT------TEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC------ccceeecCcc
Confidence 5689999999999999999999764 2468898876
No 137
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.77 E-value=0.00077 Score=73.24 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
..++|+|.|++||||||+|+.|++++.+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999998753
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.011 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|+|+|.||+||||+|+.+.+.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998865
No 139
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.70 E-value=0.00044 Score=64.61 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=31.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
+++|+|+|.+||||||+|+.|++.+ | ..+++.|++.+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~----g--~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL----S--MIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT----T--CEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc----C--CceecCChHHHH
Confidence 4689999999999999999999764 2 357788888664
No 140
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.69 E-value=0.0016 Score=66.07 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCC-CCcEEEeCCceee
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGG-DAPRIHSMDDYFM 225 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG-~~~rIlS~DDyfr 225 (535)
.....+|.|+|.+|||||||++.|...+....| ..+.+++.|+++.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~ 133 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLY 133 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCC
Confidence 457789999999999999999999987654322 2345667777654
No 141
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0028 Score=67.56 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+.=|+|.|+||+|||+||++|+..+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455678999999999999999999764
No 142
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.67 E-value=0.0086 Score=58.00 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....-|+|+|.||+||||+|+.|+..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455689999999999999999999763
No 143
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.66 E-value=0.0048 Score=65.37 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=28.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+.+|+|+|++||||||||..|++.+ + ..|++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~---~---~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF---N---GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH---T---EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC---C---CeEeecCc
Confidence 4589999999999999999999875 1 35788887
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.65 E-value=0.0014 Score=65.76 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=33.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHH--HcCCCCcEEEeCCceee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEV--ENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~--e~gG~~~rIlS~DDyfr 225 (535)
....+|.|+|.+|||||||++.|...+. ..+| .+.+++.|++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G-~i~vi~~d~~~~ 123 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR-RVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC-CEEEEEGGGGBC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC-eEEEEecCCccC
Confidence 4568999999999999999999998653 1222 356778887764
No 145
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.65 E-value=0.00078 Score=64.35 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=32.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
....+|+|+|.+||||||+++.|++.+ | ..+++.|++.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l----g--~~~~d~d~~~~~ 53 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF----G--FTYLDTGAMYRA 53 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH----C--CEEEEHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc----C--CceecCCCeeEc
Confidence 455689999999999999999999865 2 356788888764
No 146
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.63 E-value=0.0039 Score=62.02 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.++|+|.||+||||||+.|...+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5788999999999999999987644
No 147
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0034 Score=66.47 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+.=|+|.|+||+|||+||++|+..+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 345568899999999999999999764
No 148
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.62 E-value=0.004 Score=65.47 Aligned_cols=24 Identities=25% Similarity=0.101 Sum_probs=20.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+++|+|.||||||||++.|+-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 345899999999999999998763
No 149
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0027 Score=67.70 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+.+.=|+|.|+||+|||+||++|+..+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3456678999999999999999999764
No 150
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0034 Score=66.75 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+.=|+|.|+||+|||++|++|+..+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445578999999999999999999764
No 151
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.60 E-value=0.0036 Score=63.16 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+++|+|.|||||||||.+++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 448999999999999999999864
No 152
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.57 E-value=0.016 Score=56.61 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...+++|+|.+|||||||++.|+..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999987543
No 153
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0042 Score=66.31 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+.=|+|.|+||+|||+||++|+..+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh
Confidence 455679999999999999999999764
No 154
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.53 E-value=0.0024 Score=63.98 Aligned_cols=25 Identities=44% Similarity=0.697 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.-|+|+|.||+|||++|+.|+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999998764
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.51 E-value=0.0035 Score=61.25 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..-|+|.|.||+||||+|+.|+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 447889999999999999999875
No 156
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0039 Score=67.14 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+.=|+|.|+||+|||+||++|+..+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 455678899999999999999999764
No 157
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.50 E-value=0.0094 Score=64.62 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=32.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
..+.+|+|+|++|+||||++.+|+.++... |..+.+++.|-++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccc
Confidence 457789999999999999999999887765 4455666665443
No 158
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.48 E-value=0.01 Score=60.55 Aligned_cols=26 Identities=15% Similarity=-0.004 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+...+++|+|.|||||||||..|+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999999999864
No 159
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.46 E-value=0.01 Score=61.27 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=21.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
++.|.|.|||||||||-+++......
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~ 55 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ 55 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999998877665544
No 160
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.43 E-value=0.0015 Score=62.53 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=23.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+++|++.|.+||||||+++.|++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999864
No 161
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.41 E-value=0.0036 Score=63.20 Aligned_cols=24 Identities=46% Similarity=0.695 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+.-|+|+|.||+|||+||+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 356889999999999999999975
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.38 E-value=0.0055 Score=62.53 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+.-|+|+|.||+||||||+.|+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446889999999999999999875
No 163
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.37 E-value=0.011 Score=59.52 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=23.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
...+++|+|.||+||||||.+++......
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~ 95 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN 95 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34599999999999999999998765443
No 164
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.35 E-value=0.0094 Score=59.56 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...+++|+|.|||||||||.+++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998853
No 165
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.33 E-value=0.0044 Score=62.82 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=33.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
...+.+|+|+|++||||||+++.|+..+...++ .+.++..|-+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-kV~lv~~D~~ 143 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-SVVLAAADTF 143 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECTT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-EEEEEccccc
Confidence 346789999999999999999999988876544 4455555543
No 166
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.31 E-value=0.0032 Score=64.36 Aligned_cols=24 Identities=46% Similarity=0.731 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|+|.||+|||+||+.|+..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 357889999999999999999864
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.31 E-value=0.027 Score=58.08 Aligned_cols=115 Identities=9% Similarity=0.130 Sum_probs=58.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e 263 (535)
.||||.|.||+||||||..++...... +..+.+||...-......++-.. ..+ ..+ .++..... .
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms~~ql~~Rlls~----~~~-----v~~-~~l~~g~L----s 111 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMSAEQLALRALSD----LTS-----INM-HDLESGRL----D 111 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSCHHHHHHHHHHH----HHC-----CCH-HHHHHTCC----C
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHH----hhC-----CCH-HHHhcCCC----C
Confidence 499999999999999999998765543 33444555432211111000000 000 000 00000011 1
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH-HHHHHhhc-CceEEEEE
Q 009432 264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ-FWATAKRS-GYEVYILE 316 (535)
Q Consensus 264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~-f~~LAr~~-G~~V~vIe 316 (535)
..-|+.+..++. .|.... +.|.|....+...... ...+.+++ +..+++|+
T Consensus 112 ~~e~~~l~~a~~-~l~~~~--l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 112 DDQWENLAKCFD-HLSQKK--LFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp HHHHHHHHHHHH-HHHHSC--EEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHH-HHhcCC--eEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 122444444333 344444 7888887777665444 44466677 77777776
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.30 E-value=0.031 Score=58.81 Aligned_cols=117 Identities=17% Similarity=0.129 Sum_probs=59.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
..+++|+|.||+||||||..++.......|..+.+++...=......++... ..+... ..+. ...+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~----~~~i~~--~~l~--------~g~l 265 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCS----EARIDM--NRVR--------LGQL 265 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHH----HTTCCT--TTCC--------GGGC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHH----HcCCCH--HHHh--------CCCC
Confidence 4499999999999999999998765543344445555542111110000000 000000 0000 0011
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHH-HHHHHHHhhcCceEEEEE
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADF-AQFWATAKRSGYEVYILE 316 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R-~~f~~LAr~~G~~V~vIe 316 (535)
....|..+..++.. +.... +.|.|....+..+. .....+.++++..+++|+
T Consensus 266 ~~~~~~~~~~a~~~-l~~~~--l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 266 TDRDFSRLVDVASR-LSEAP--IYIDDTPDLTLMEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp CHHHHHHHHHHHHH-HHTSC--EEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CHHHHHHHHHHHHH-HhcCC--EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 12234444444333 44554 77777766665544 344556677888776665
No 169
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.28 E-value=0.00082 Score=65.27 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....+|+|.|++||||||+|+.|++.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999999764
No 170
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.25 E-value=0.002 Score=62.67 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=28.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
...+|.|+|.+||||||+++.|++++ | ...+..|.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L----g--~~~~d~g~i~ 62 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL----N--WRLLDSGAIY 62 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT----T--CEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc----C--CCcCCCCcee
Confidence 45689999999999999999999764 2 2344666665
No 171
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.22 E-value=0.012 Score=60.32 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+...++.|+|.+|||||||++.|+..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999999999865
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.17 E-value=0.0046 Score=57.22 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=23.3
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..|+|+|.||+||||+|+.+...+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478899999999999999999876543
No 173
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.16 E-value=0.027 Score=59.39 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=28.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
..+++|.|.||+||||||..|+.......|..+.+++..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 459999999999999999999877654334344455543
No 174
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.14 E-value=0.01 Score=58.56 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=19.8
Q ss_pred EEEEccCCChHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~ 206 (535)
|+|.|.|||||||||+.|+..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999875
No 175
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.11 E-value=0.0038 Score=59.99 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....+|.|+|..|||||||++.|+..+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998865
No 176
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.03 E-value=0.032 Score=59.21 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=35.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
..+.+|+|+|.+|+||||+|..|+..+....|..+.++..|-++
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 45678889999999999999999998877635566677777543
No 177
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.02 E-value=0.0027 Score=59.36 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+|+|+|++|||||||++.|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3478999999999999999998754
No 178
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.02 E-value=0.0089 Score=60.29 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=31.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
-....+|+|+|+.||||||+++.|+..+...+| .+.+...|
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g-~V~l~g~d 137 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGD 137 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeec
Confidence 456789999999999999999999988765544 33343333
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.02 E-value=0.02 Score=60.76 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=20.6
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
-|+|+|.||+||||+|+.|...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999976
No 180
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.02 E-value=0.0082 Score=61.67 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..-|+|+|.||+|||+||+.|+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999875
No 181
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.98 E-value=0.007 Score=61.90 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=31.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
..+.+|+|+|++||||||+++.|+..+...+| .+.+...|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g-~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF-SVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEEeec
Confidence 56789999999999999999999988776654 34444444
No 182
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.98 E-value=0.006 Score=61.33 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=32.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
.+.+|+|+|.+||||||++..|+..+....|..+.++..|-+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 456899999999999999999998876433555566666654
No 183
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.95 E-value=0.0057 Score=58.63 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
-|+|+|.||+||||+|+.|+..+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 48899999999999999998764
No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.95 E-value=0.066 Score=55.29 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
.-+|+++|..||||||+.+.|...+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 3499999999999999999998876543
No 185
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.90 E-value=0.0083 Score=65.12 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=32.5
Q ss_pred CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+.-....+|+|+|++|||||||++.|+..+...+| .+.+...|.
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G-~V~l~g~D~ 331 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAAGDT 331 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEECCCT
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC-eEEEecCcc
Confidence 33457889999999999999999999988765544 333333443
No 186
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.88 E-value=0.011 Score=61.46 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=31.5
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
-....+|+|+|+.||||||+++.|+..+...+| .+.+...|
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G-~V~l~g~D 194 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGD 194 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCC-EEEEeccc
Confidence 456789999999999999999999988766544 33443444
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.86 E-value=0.011 Score=62.30 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.++|+|.||+||||||+.|...+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999887643
No 188
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.84 E-value=0.057 Score=57.25 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=28.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
..+|||+|.||+||||||.+++...... |..+.+++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC
Confidence 4599999999999999999998776544 3344444543
No 189
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.84 E-value=0.0045 Score=57.52 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.|+|+|.+|||||||++.|...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999865
No 190
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.83 E-value=0.0091 Score=55.79 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
.+|+++|.+|||||||+.+|...+...|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4789999999999999999998876543
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.82 E-value=0.0036 Score=55.44 Aligned_cols=26 Identities=38% Similarity=0.326 Sum_probs=22.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...|+|+|.||+||||+|+.+++.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 33678999999999999999998764
No 192
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.77 E-value=0.039 Score=49.53 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=24.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
++|+|.+.........++.+.+..+.++++|.-.+
T Consensus 110 i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 144 (195)
T 1svi_A 110 VQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144 (195)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 78899887654444556677777888887776655
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.76 E-value=0.0066 Score=55.83 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..|+|+|.+|+||||||+.|...+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578899999999999999999876543
No 194
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.75 E-value=0.017 Score=62.02 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.2
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|+|+|.||+||||||+.|+..+
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8899999999999999999764
No 195
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.74 E-value=0.0076 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
...++|+|.+|||||||++.|...+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347888999999999999999987643
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.67 E-value=0.0093 Score=60.26 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=29.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...+|.|+|++||||||+++.|+..+...+| .+.+...|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeec
Confidence 4568999999999999999999988765544 33343333
No 197
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.67 E-value=0.035 Score=59.08 Aligned_cols=40 Identities=10% Similarity=-0.050 Sum_probs=28.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...+++|.|.||+||||||.+++.......|..+.+++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 4458999999999999999999876543313344455544
No 198
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.66 E-value=0.0066 Score=55.26 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
+++|+|.+|+||||+|+.+++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999988753
No 199
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.58 E-value=0.084 Score=56.02 Aligned_cols=40 Identities=33% Similarity=0.358 Sum_probs=31.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
.+.+|+|+|++||||||++..|+..+...+ ..+.++..|-
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g-~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEeeccc
Confidence 567888889999999999999999887654 3555666653
No 200
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.57 E-value=0.0059 Score=57.04 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...++.|+|.+|||||||++.|...+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34589999999999999999998753
No 201
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.57 E-value=0.0084 Score=58.06 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=28.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
...|+|+|.+||||||||..|+++ + . .+++.|-...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~----g--~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR----G--H-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT----T--C-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh----C--C-eEEecchhhe
Confidence 457999999999999999999864 2 2 6777665443
No 202
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.56 E-value=0.015 Score=59.07 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=32.6
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
...+.+|+|+|.+|+||||++..|+..+...++ .+.++..|-
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~-kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY-KVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 356789999999999999999999988876644 444555553
No 203
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.56 E-value=0.0093 Score=57.80 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|+|.||+|||++|+.|+..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999875
No 204
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.46 E-value=0.0062 Score=57.84 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+++|+|.+|||||||++.|...+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4489999999999999999999753
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.46 E-value=0.014 Score=55.66 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
....++++.|.+|+||||++..|+..+. . |..+.++..|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeCC
Confidence 4578999999999999999999998775 4 4444455544
No 206
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.44 E-value=0.035 Score=67.97 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=30.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM 225 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr 225 (535)
.+|+|.|.||+||||||.+++......++ .+..++..+-..
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~-~VlyiS~Ees~~ 773 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALD 773 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEECTTSCCC
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCC-CeEEEeccchHH
Confidence 38999999999999999999877655443 445556555443
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.42 E-value=0.016 Score=59.24 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=30.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
....+|.|+|.||||||||.+.|...+...++ .+.|+..|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~-~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGH-KLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCC-eEEEEeec
Confidence 34789999999999999999999887655433 34455543
No 208
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.41 E-value=0.01 Score=56.46 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=27.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH-----HcCCCCcEEEeCCcee
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV-----ENGGDAPRIHSMDDYF 224 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~-----e~gG~~~rIlS~DDyf 224 (535)
.++++++|.||||||++|..+...+. +.|.....+...|++.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~ 51 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK 51 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc
Confidence 45899999999999999988643321 1221334445566654
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.37 E-value=0.014 Score=61.47 Aligned_cols=24 Identities=46% Similarity=0.695 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+.-|+|+|.||+|||+||+.|+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999975
No 210
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.37 E-value=0.008 Score=57.49 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|+|+|.||+||||||+.|+..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998753
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.36 E-value=0.0098 Score=63.11 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=33.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF 224 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf 224 (535)
..+.+|+|+|.+|+||||+|..|+..+...| ..+.+++.|-++
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G-~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRG-LKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHH-CCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeccccC
Confidence 3457899999999999999999998877654 455666766543
No 212
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.34 E-value=0.021 Score=56.49 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.++++.|.||+||||+|+.|+..+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3478999999999999999998763
No 213
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.30 E-value=0.014 Score=54.41 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=23.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..+|+++|.+|||||||++.|...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3478999999999999999998876543
No 214
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.27 E-value=0.018 Score=58.83 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=30.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
....+|+|+|.||+|||||+..|...+... |..+.++..|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEecC
Confidence 356789999999999999999998877654 3444555554
No 215
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.24 E-value=0.0095 Score=52.70 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEccCCChHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~ 206 (535)
|+|.|.||+|||++|+.|...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 216
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.23 E-value=0.055 Score=66.27 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=28.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY 223 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy 223 (535)
+++|+|.||+||||||.+++......|+ .+..++.+.-
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~~G~-~vlyis~E~s 422 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHA 422 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEccCc
Confidence 9999999999999999998876655543 4455555443
No 217
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.17 E-value=0.01 Score=59.89 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..++|+|.||+||||||+.|+..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 358899999999999999999764
No 218
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.14 E-value=0.02 Score=56.48 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=24.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
...+|+++|..||||||+.+.|...+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 4558999999999999999999887644
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.09 E-value=0.019 Score=65.62 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=26.8
Q ss_pred hcCCCC---CCCCCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 172 LKQPHR---ATRPDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 172 l~~p~r---~~r~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
|+.|.. +....+.-|+|.|+||+|||+||++|+..
T Consensus 224 l~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp HHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred ccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 556643 22345677999999999999999999964
No 220
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.07 E-value=0.066 Score=66.55 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=51.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ 262 (535)
...|+|+|+||+||||||.++......+|+ .+..++..+.+...... .+|.+-. ++ .++.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~-~v~Fi~~e~~~~~l~a~--------~~G~dl~------~l--~v~~~~~ 1489 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYAR--------KLGVDID------NL--LCSQPDT 1489 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEECTTSCCCHHHHH--------HTTCCTT------TC--EEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEEcccccCHHHHH--------HcCCCch------hc--eeecCCh
Confidence 348999999999999999998776555543 45565666554333211 1221111 01 1111111
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeCCC
Q 009432 263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRN 292 (535)
Q Consensus 263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN 292 (535)
.+ .+++.+.+.++++.+.+||||..+
T Consensus 1490 ~E----~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1490 GE----QALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HH----HHHHHHHHHHHHTCCSEEEESCGG
T ss_pred HH----HHHHHHHHHHhcCCCCEEEEcChh
Confidence 11 233445556666778899999873
No 221
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.03 E-value=0.011 Score=58.65 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...|+|+|.||+||||+|+.|+..+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4478999999999999999999753
No 222
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.01 E-value=0.0092 Score=58.05 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+++-.|++.|+||+||||+|..|+..+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 445579999999999999999999875
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.00 E-value=0.012 Score=57.38 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.2
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|+|+|.|||||||||+.|+..+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8899999999999999998753
No 224
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.95 E-value=0.038 Score=59.36 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
...+++|.|.+|||||||++.|+......
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 34589999999999999999998776544
No 225
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.93 E-value=0.026 Score=57.56 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEe
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHS 219 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS 219 (535)
....+|.|+|.||||||||.+.|...+...+| ...|+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g-~v~i~~ 90 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGH-KVAVLA 90 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC-EEEEEE
Confidence 45679999999999999999999877655444 334444
No 226
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.90 E-value=0.16 Score=50.78 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+.+-.|.++|.||+|||||..+|..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4567899999999999999999873
No 227
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.85 E-value=0.011 Score=56.26 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.....+|.|.|..||||||+++.|...
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345689999999999999999999864
No 228
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.81 E-value=0.02 Score=55.83 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...|+|+|.||+||||+|+.|+..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 35789999999999999999998753
No 229
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.80 E-value=0.075 Score=66.06 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=28.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+++|.|.||+||||||.+++......| ..+..++...
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~G-~~vlyis~E~ 421 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEH 421 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEcCC
Confidence 999999999999999999987765443 3444555544
No 230
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.79 E-value=0.008 Score=57.76 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=20.2
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|+|+|.||+||||+|+.|+..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999764
No 231
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.77 E-value=0.018 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....++.|.|..|||||||.|.|...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999865
No 232
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.75 E-value=0.034 Score=55.65 Aligned_cols=39 Identities=33% Similarity=0.361 Sum_probs=30.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
...+|+++|.+|+||||+++.|+..+...++ .+.++..|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEecCC
Confidence 5668888899999999999999988776544 44454544
No 233
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.74 E-value=0.18 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEEEccCCChHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..|+|+|.||+|||||..+|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999974
No 234
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.018 Score=53.45 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
+|.|+|.+|||||||++.|...+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 78899999999999999999876543
No 235
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.64 E-value=0.027 Score=56.58 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=30.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+.+|+++|.+|+||||++..|+..+...|+ .+.++..|-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-KVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 678888999999999999999988776544 445555553
No 236
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.63 E-value=0.015 Score=59.06 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=21.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.-|+|+|.||+|||++|+.|++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3467889999999999999999764
No 237
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.61 E-value=0.027 Score=53.58 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..-|+|+|.+|+||||+|..|.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 347999999999999999999864
No 238
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.60 E-value=0.018 Score=57.74 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..|+|+|.||+|||++|+.++..+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999875
No 239
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.59 E-value=0.017 Score=58.62 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+...+|.|+|.+|||||||++.|...+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344489999999999999999999875
No 240
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.57 E-value=0.022 Score=57.97 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|+|.||+||||+|+.|++.+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999764
No 241
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.55 E-value=0.028 Score=52.35 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=21.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
.+++++|.+||||||++.++...+...+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g 31 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK 31 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 4899999999999999966665544443
No 242
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.53 E-value=0.018 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
+|.|+|.+|||||||++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 688999999999999999998775
No 243
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.53 E-value=0.031 Score=57.82 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=25.5
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
-....+|+++|.+||||||+.+.|...+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 345678999999999999999999987654
No 244
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.48 E-value=0.021 Score=59.68 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+...+|+|+|.||||||||++.|+..+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345589999999999999999999753
No 245
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.028 Score=60.21 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...|+|+|.||+||||+|+.|++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999764
No 246
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.46 E-value=0.011 Score=52.33 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+|.|.||+|||++|+.|..
T Consensus 30 vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCC
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 77899999999999999975
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.44 E-value=0.02 Score=57.54 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHH-HcC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEV-ENG 211 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~-e~g 211 (535)
.-|+|.|.||+|||+||+.|+..+. ..|
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999998776 543
No 248
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.44 E-value=0.023 Score=60.72 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|+|+||+||||+|+.|+..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 348899999999999999999864
No 249
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.44 E-value=0.029 Score=58.53 Aligned_cols=26 Identities=46% Similarity=0.609 Sum_probs=22.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
...|+|+|.|||||||+++.|+..+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45789999999999999999987653
No 250
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.42 E-value=0.04 Score=56.01 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=30.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
....+|+++|.||+|||||++.|...+...++ ...++..|
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-~v~v~~~d 93 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL-KVAVIAVD 93 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEEeec
Confidence 45678899999999999999999887665543 34455544
No 251
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.33 E-value=0.029 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....|+|+|.+|||||||+.+|...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 252
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.32 E-value=0.03 Score=49.94 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+|+|.+|+|||||.++|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999974
No 253
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.31 E-value=0.037 Score=59.45 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+.-|+|.|.||+|||++|+.|...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH
Confidence 345889999999999999999865
No 254
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.30 E-value=0.018 Score=54.43 Aligned_cols=21 Identities=38% Similarity=0.382 Sum_probs=19.0
Q ss_pred EEEEEccCCChHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e 205 (535)
+|++.|.+||||||||.+|+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 478999999999999999984
No 255
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=94.27 E-value=0.035 Score=56.67 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=24.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+++||+-|.=||||||.++.|.+.+
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~L 110 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANM 110 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999865
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.26 E-value=0.031 Score=58.92 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|.|+||+|||++|+.|+..+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 358899999999999999999875
No 257
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.24 E-value=0.024 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
++|.|.||+||||+|+.|+..+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.24 E-value=0.019 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3448999999999999999999754
No 259
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.23 E-value=0.026 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...|+|+|.+|||||||.+.|..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 46799999999999999999985
No 260
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.17 E-value=0.023 Score=56.50 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
....|+|+|.||+||||+|+.+...+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 344788999999999999999987753
No 261
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.16 E-value=0.019 Score=52.45 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
-.....|+|+|.+|||||||.+.|..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34567899999999999999999863
No 262
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.12 E-value=0.025 Score=56.09 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
....|+|+|.+|+||||||+.+...+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3447889999999999999999887543
No 263
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.09 E-value=0.031 Score=49.50 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...|+|+|.+|+|||||.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999974
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.07 E-value=0.04 Score=62.62 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+..|+|+|.|||||||||+.|+..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45567899999999999999999864
No 265
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.07 E-value=0.027 Score=56.49 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEccCCChHHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
++++|.||+||||+|+.|+..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78899999999999999998753
No 266
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.06 E-value=0.029 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.++|+|.+|+||||+++.+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999998875
No 267
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.05 E-value=0.026 Score=55.98 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
-|+|+|.||+|||++|+.|+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 268
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.031 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....-|+|+|.+|+|||||...|..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566899999999999999999975
No 269
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.02 E-value=0.035 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEEccCCChHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+-|+++|.+|+|||||.+.|..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999874
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.02 E-value=0.022 Score=54.64 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999754
No 271
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.98 E-value=0.031 Score=55.97 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=22.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
+..|+|+|.||+||||+|+.+...+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999987653
No 272
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.97 E-value=0.04 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....|+|+|.+|+|||||+.+|...+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35678888999999999999998653
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.93 E-value=0.024 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999754
No 274
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.93 E-value=0.03 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+++|.+|+|||||++.|..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999974
No 275
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.92 E-value=0.041 Score=48.36 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+..-|+|+|.+|+|||||.++|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999874
No 276
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.90 E-value=0.034 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..|+|+|.||+||||+|+.|...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999998764
No 277
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.89 E-value=0.036 Score=47.97 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.+.|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 345689999999999999999875
No 278
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.85 E-value=0.025 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
-|+|.|.||+|||+||+.|+..+
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 48889999999999999998764
No 279
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.85 E-value=0.031 Score=48.23 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=23.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
++|+|.++........+.++.+..+.++.+|--.+
T Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 118 (161)
T 2dyk_A 84 LFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV 118 (161)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred EEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECc
Confidence 77899887544444566667777778876666655
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.85 E-value=0.031 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999854
No 281
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.83 E-value=0.038 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+++|.+|+|||||.+.|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999874
No 282
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.82 E-value=0.03 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.++.|+|..|||||||.+.|.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 283
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.81 E-value=0.03 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
-|+|+|.||+|||++|+.|...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 5788999999999999999875
No 284
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.038 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+-|+|+|.+|+|||||.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999874
No 285
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.78 E-value=0.036 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+-|+|+|.+|+|||||.+.|..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 45689999999999999999985
No 286
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.74 E-value=0.046 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+-|+|+|.+|+|||||.++|..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 3456799999999999999999863
No 287
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.73 E-value=0.019 Score=56.90 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
|+|+|.||+|||++|+.|...+
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 8899999999999999999753
No 288
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.72 E-value=0.046 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+++|.+|+|||||.+.|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999874
No 289
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.70 E-value=0.037 Score=54.33 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=27.8
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT 226 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~ 226 (535)
++|.|+|.+||||||+|+.|.+.+ | ..+++.++..+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~----g--~~~~~~~~~~~~ 38 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY----S--AVKYQLAGPIKD 38 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----C--EEECCTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----C--CeEEecChHHHH
Confidence 589999999999999999998742 3 345566555443
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.69 E-value=0.026 Score=53.86 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=22.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGG 212 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG 212 (535)
.++.|+|..|||||||.+.|.-. ....|
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 37889999999999999999876 43334
No 291
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.69 E-value=0.034 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEEEccCCChHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+=|+|+|.+|+|||||.++|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999874
No 292
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.67 E-value=0.04 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..-|+|+|.+|+|||||.++|..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999974
No 293
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.66 E-value=0.028 Score=55.58 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3448999999999999999999754
No 294
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.031 Score=55.62 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=37.6
Q ss_pred ceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCC---HHHHHHhhc----CCCCHHHHHHHhhcc
Q 009432 283 FTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKD---PAGCAARNV----HGFTLDDIERMAGQW 345 (535)
Q Consensus 283 f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d---~e~ci~RNi----h~VpeEvIe~M~krf 345 (535)
+.++|+|. ...+......++++..+..-.+.+|.++... ...+..|-. ...+.+.+..+..+.
T Consensus 135 ~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 135 YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp CEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHH
Confidence 45999995 5677788888888888765455555554211 123333432 256666666665544
No 295
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.60 E-value=0.035 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..++.|+|..|||||||.+.|.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999985
No 296
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.59 E-value=0.038 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
+++.|.||+||||+|+.+++.+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 297
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.57 E-value=0.036 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEEccCCChHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+=|+|+|.+|+|||||.++|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999874
No 298
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.57 E-value=0.17 Score=57.64 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
-++|+|.||+||||+|+.|+..+..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4688999999999999999987643
No 299
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.57 E-value=0.041 Score=54.81 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=37.7
Q ss_pred CCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhc----CCCCHHHHHHHhhcc
Q 009432 281 GNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNV----HGFTLDDIERMAGQW 345 (535)
Q Consensus 281 G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNi----h~VpeEvIe~M~krf 345 (535)
|...+||||.. .........+.++..+..-.+.+|.+.. .. ..+..|-. ...+.+.+..+..++
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~-~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT-DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES-CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC-ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHH
Confidence 33458999975 3456677778888877666666666652 22 23333322 256666666665544
No 300
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.56 E-value=0.037 Score=48.25 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEEEccCCChHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~ 204 (535)
+=|+|+|.+|+|||||.++|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 348999999999999999985
No 301
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.54 E-value=0.034 Score=48.30 Aligned_cols=20 Identities=40% Similarity=0.785 Sum_probs=18.3
Q ss_pred EEEEEccCCChHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~ 204 (535)
=|+|+|.+|+|||||.++|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999985
No 302
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.53 E-value=0.038 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.+|+|..|||||||+++|.-.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998543
No 303
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.53 E-value=0.054 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+..-|+|+|.+|+|||||.++|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999974
No 304
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.53 E-value=0.048 Score=47.65 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..-|+|+|.+|+|||||.++|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45699999999999999999863
No 305
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.52 E-value=0.045 Score=55.85 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
...+.|+|.+|||||||++.|...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999764
No 306
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.51 E-value=0.031 Score=55.72 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 348999999999999999999754
No 307
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.51 E-value=0.038 Score=47.96 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.+.|..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 45689999999999999999875
No 308
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.51 E-value=0.06 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.++|..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999975
No 309
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.50 E-value=0.055 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....-|+|+|.+|+|||||.++|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHc
Confidence 3455788999999999999999874
No 310
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.49 E-value=0.032 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999754
No 311
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.49 E-value=0.032 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999754
No 312
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.49 E-value=0.032 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3448999999999999999999854
No 313
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.49 E-value=0.046 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+|+|.+|+|||||.+.|..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999874
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.48 E-value=0.037 Score=54.58 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...++.|+|..|||||||.+.|.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445899999999999999999985
No 315
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.48 E-value=0.038 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..=|+|+|.+|+|||||.+.|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999874
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.48 E-value=0.048 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35689999999999999999874
No 317
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.47 E-value=0.039 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.++|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999874
No 318
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.46 E-value=0.032 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 448999999999999999999854
No 319
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.42 E-value=0.04 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+++-.|+|.|+||+|||+||+.|+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44568999999999999999999864
No 320
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.42 E-value=0.039 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+-|+|+|.+|+|||||.+.|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46699999999999999999874
No 321
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.40 E-value=0.034 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999854
No 322
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.40 E-value=0.043 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.++|..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999999975
No 323
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.39 E-value=0.033 Score=55.11 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999854
No 324
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.37 E-value=0.042 Score=59.58 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
....|+|+|.||+||||||+.|+..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45589999999999999999999875
No 325
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.37 E-value=0.041 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.++|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 345689999999999999999874
No 326
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.37 E-value=0.056 Score=47.37 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+|+|.+|+|||||.++|..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999875
No 327
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.35 E-value=0.045 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+-|+|+|.+|+|||||.++|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999999974
No 328
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.34 E-value=0.034 Score=54.61 Aligned_cols=25 Identities=44% Similarity=0.502 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3448999999999999999999854
No 329
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.32 E-value=0.035 Score=54.92 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4458999999999999999999854
No 330
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.31 E-value=0.045 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
++++|.||+||||+|+.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8899999999999999999875
No 331
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.25 E-value=0.04 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEEccCCChHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+-|+|+|.+|+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999874
No 332
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.20 E-value=0.051 Score=58.72 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEccCCChHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~ 206 (535)
|+|+|.||+||||||+.|+..
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999875
No 333
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.18 E-value=0.045 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.+.|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 456799999999999999999874
No 334
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.17 E-value=0.038 Score=54.41 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999754
No 335
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.15 E-value=0.043 Score=48.12 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
..+-|+|+|.+|+|||||.+.|.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999986
No 336
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.14 E-value=0.033 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.++.|+|..|||||||.+.|.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37889999999999999999754
No 337
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.11 E-value=0.13 Score=54.09 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 274 FTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 274 akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
+..+++.-.--++|+|++......-..+.++.++.+.++.++.=.+
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~ 141 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKL 141 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECc
Confidence 3344433222378899877555555678888888888887766554
No 338
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.10 E-value=0.049 Score=57.54 Aligned_cols=26 Identities=31% Similarity=0.195 Sum_probs=23.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..-+|+++|..||||||+.+.|...+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 45589999999999999999998875
No 339
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.10 E-value=0.04 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|.|..|||||||.+.|.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3448999999999999999999854
No 340
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.06 E-value=0.048 Score=47.73 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+-|+|+|.+|+|||||.+.|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46689999999999999999874
No 341
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.05 E-value=0.048 Score=48.06 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.++|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 345699999999999999999874
No 342
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.04 E-value=0.054 Score=47.74 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=20.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+=|+|+|.+|+|||||.+++..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3455689999999999999999874
No 343
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.02 E-value=0.041 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999854
No 344
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.02 E-value=0.049 Score=48.18 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
....-|+|+|.+|+|||||.++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999998886
No 345
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.02 E-value=0.051 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.|.++|.+|||||||.+.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998764
No 346
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=92.99 E-value=0.19 Score=50.62 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhc
Q 009432 270 MLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQ 344 (535)
Q Consensus 270 llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~kr 344 (535)
..+.+.+.++.|+ .||+|-.- .. ..++ +......++|.+..++.+++.+|.. ..+.+.++.+..+
T Consensus 178 ~~~~V~~~~~~gk--~viLdid~---qg---~~~l-k~~~~~pi~IFI~PpS~e~L~~r~~-~r~~e~~~~~~~r 242 (292)
T 3tvt_A 178 SVASVREVAEKGK--HCILDVSG---NA---IKRL-QVAQLYPVAVFIKPKSVDSVMEMNR-RMTEEQAKKTYER 242 (292)
T ss_dssp EHHHHHHHHHHTC--EEEECCCT---HH---HHHH-HHTTCCCEEEEECCSCHHHHHHTCT-TSCTTHHHHHHHH
T ss_pred ehHHHHHHHHcCC--cEEEeccc---hh---hhhc-ccccccceEEEEECCCHHHHHHHHh-CCCchhHHHHHHH
Confidence 4456778889999 99998641 12 2222 2334445566666556777766654 3344444444433
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.99 E-value=0.049 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.7
Q ss_pred EEEEEccCCChHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e 205 (535)
=|+|+|.+|+|||||.++|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999873
No 348
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.98 E-value=0.042 Score=54.77 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3448999999999999999999854
No 349
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.051 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.++|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999874
No 350
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.95 E-value=0.05 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.++|..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999874
No 351
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.95 E-value=0.057 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+|+|.+|+|||||..+|..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999999985
No 352
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.95 E-value=0.05 Score=48.17 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+|+|.+|+|||||.++|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999874
No 353
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.94 E-value=0.053 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.+.|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 345699999999999999999875
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.94 E-value=0.052 Score=47.00 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|+|+|.+|+|||||.++|..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999975
No 355
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.92 E-value=0.056 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEccCCChHHHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e~l 207 (535)
++++|.+|+||||+|+.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8899999999999999999875
No 356
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.92 E-value=0.056 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.+.|..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999974
No 357
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.88 E-value=0.075 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+-|+|+|.+|+|||||.++|..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999874
No 358
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.88 E-value=0.07 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....=|+|+|.+|+|||||.+.|..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999874
No 359
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.88 E-value=0.07 Score=47.81 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.....-|+|+|.+|+|||||.++|..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999999973
No 360
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.84 E-value=0.14 Score=50.12 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=30.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
.++.|++.|.||+||||+|-.++..+...| ..+.++..|.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G-~~V~v~d~D~ 44 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQG-VRVMAGVVET 44 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTT-CCEEEEECCC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCC-CCEEEEEeCC
Confidence 467799999999999999999988877664 4444555553
No 361
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.81 E-value=0.051 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
--+++|+|..|||||||.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 458999999999999999999864
No 362
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.77 E-value=0.041 Score=56.56 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+|+|+|..|||||||++.|...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 389999999999999999998753
No 363
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.74 E-value=0.083 Score=47.85 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.2
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+...+=|+|+|.+|+|||||.+++..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 34567799999999999999988874
No 364
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.71 E-value=0.048 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999854
No 365
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.69 E-value=0.062 Score=47.81 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+=|+|+|.+|+|||||.+.|...
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHhh
Confidence 3456999999999999999777643
No 366
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.059 Score=55.05 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=24.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.+-.|+|.|.||+|||++++.+++.+.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4457899999999999999999988754
No 367
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.60 E-value=0.06 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.++|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999999874
No 368
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.57 E-value=0.082 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
.+.+-|+|+|.+|+|||||.++|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999999986
No 369
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.57 E-value=0.11 Score=54.72 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=24.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
.++|.|.|||||||+++.+...+...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999998877654
No 370
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.065 Score=47.77 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+-|+|+|.+|+|||||.++|..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999875
No 371
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.55 E-value=0.075 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....-|+++|.+|+|||||.++|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999873
No 372
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.54 E-value=0.062 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.++|..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 45699999999999999999875
No 373
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.53 E-value=0.052 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||.+.|.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999854
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.53 E-value=0.072 Score=47.00 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.++|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 345689999999999999999874
No 375
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.52 E-value=0.39 Score=48.29 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=38.9
Q ss_pred CCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhcC---CCCHHHHHHHhhc
Q 009432 281 GNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNVH---GFTLDDIERMAGQ 344 (535)
Q Consensus 281 G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNih---~VpeEvIe~M~kr 344 (535)
|.+.+||||. -..+......+.+...+..-.+++|.++. .+ .++..| .- ..+.+.+..+..+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~-~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR-RWHYLLPTIKSR-VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES-CGGGSCHHHHTT-SEEEECCCCHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC-ChHhChHHHHce-eEeCCCCCHHHHHHHHHH
Confidence 4456999996 34456666778888887766666666652 32 356667 32 5666666665544
No 376
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=92.45 E-value=0.95 Score=46.69 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=23.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
..+-|+++|.+++|||||..+|.....+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~ 38 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAE 38 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHS
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhc
Confidence 34679999999999999999998754333
No 377
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.45 E-value=0.055 Score=55.83 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+++|.|.||+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 346789999999999999999864
No 378
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.44 E-value=0.05 Score=55.15 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|+|..|||||||++.|...
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 348999999999999999999864
No 379
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.42 E-value=0.074 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=20.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+..-|+|+|.+|+|||||.++|..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999974
No 380
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.41 E-value=0.066 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.++|..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999875
No 381
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.40 E-value=0.097 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.+.|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 456799999999999999999874
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.36 E-value=0.086 Score=47.22 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.++|..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHhc
Confidence 456689999999999999999875
No 383
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.31 E-value=0.092 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+=|+|+|.+|+|||||.++|..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999875
No 384
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.068 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
.+=|+|+|.+|+|||||.++|...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346899999999999999998854
No 385
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.29 E-value=0.066 Score=55.65 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|.|.+|||||||.+.|+-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3448999999999999999999864
No 386
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.25 E-value=0.069 Score=48.68 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.++|..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 456799999999999999999885
No 387
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=92.18 E-value=0.48 Score=51.35 Aligned_cols=35 Identities=3% Similarity=0.046 Sum_probs=27.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
++|||++.....+-..++..++.++.++.++.=.+
T Consensus 110 llVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~ 144 (528)
T 3tr5_A 110 LMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKM 144 (528)
T ss_dssp EEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 88999988766666778889999999876665444
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.072 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.+.|..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhc
Confidence 345699999999999999999874
No 389
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.12 E-value=0.049 Score=62.26 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=20.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+.=|+|.|+||+|||.+|++|+..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHH
Confidence 345789999999999999999964
No 390
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.12 E-value=0.087 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=21.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+|+|.|.+|+|||||++.+.+.+
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998764
No 391
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.11 E-value=0.095 Score=47.12 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
...-|+|+|.+|+|||||.++|.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999999987
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.11 E-value=0.087 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....-|+|+|.+|+|||||.+.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 4556799999999999999999874
No 393
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.08 E-value=0.08 Score=47.71 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.++|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 345699999999999999999874
No 394
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.05 E-value=0.085 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
-|+|+|.||+|||++|+.|...
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHHh
Confidence 5788999999999999999875
No 395
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.04 E-value=0.074 Score=56.40 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
-++|+|.||+|||++|+.|+..+.
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999998764
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.03 E-value=0.095 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.++|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999999874
No 397
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.02 E-value=0.082 Score=47.64 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+=|+|+|.+|+|||||.++|..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc
Confidence 3456799999999999999999875
No 398
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.02 E-value=0.094 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.+.|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999875
No 399
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.00 E-value=0.076 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=19.8
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..-|+|+|.+|+|||||.++|..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 400
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.99 E-value=0.083 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.0
Q ss_pred cEEEEE--EccCCChHHHHHHHHHHHHH
Q 009432 183 HFAIIL--RGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 183 ~~LIIL--~GLPGSGKSTLAr~L~e~l~ 208 (535)
..+++| +|.+|+|||||++.+.+.+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 447777 99999999999999987654
No 401
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.99 E-value=0.088 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
+++|+|.+|+|||||++.+.+.
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 8899999999999999999865
No 402
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.94 E-value=0.094 Score=48.19 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=20.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+.+-|+|+|.+|+|||||.+++..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999999874
No 403
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.92 E-value=0.079 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|.|.+|||||||.+.|+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3448999999999999999999854
No 404
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.91 E-value=0.081 Score=48.09 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+-|+|+|.+|+|||||...|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999874
No 405
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.90 E-value=0.21 Score=47.05 Aligned_cols=36 Identities=14% Similarity=-0.043 Sum_probs=27.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEE
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH 218 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIl 218 (535)
...|++++|.+||||||.+-.++.++...| ..+.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAK-QKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEE
Confidence 357999999999999999988877765543 444444
No 406
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.89 E-value=0.095 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.+++..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 456699999999999999999875
No 407
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.88 E-value=0.079 Score=54.88 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|.|.+|||||||.+.|+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999854
No 408
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.88 E-value=0.08 Score=48.40 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.++|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 345689999999999999999863
No 409
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.86 E-value=0.08 Score=55.19 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|.+|||||||.+.|.-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3448999999999999999999854
No 410
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.85 E-value=0.069 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|..|||||||.+.|.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3448999999999999999999754
No 411
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.85 E-value=0.08 Score=55.45 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|.|.+|||||||.|.|+-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 3448999999999999999999864
No 412
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.83 E-value=0.052 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+|+++|.+|||||||++.|...+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998753
No 413
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.83 E-value=0.11 Score=47.71 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.5
Q ss_pred cEEEEEEccCCChHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
..-|+|+|.+|+|||||.++|.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4468999999999999999986
No 414
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.82 E-value=0.11 Score=46.97 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+=|+|+|.+|+|||||.++|..
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 3456799999999999999999874
No 415
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.81 E-value=0.083 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.+.|..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 45699999999999999999873
No 416
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.79 E-value=0.083 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|.|.+|||||||.+.|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 348999999999999999999854
No 417
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.77 E-value=0.084 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.+.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999874
No 418
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.75 E-value=0.089 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.++|..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999999875
No 419
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.74 E-value=0.082 Score=47.49 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.++|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999874
No 420
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.74 E-value=0.054 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=10.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+-|+|+|.+|+|||||.+.|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999999864
No 421
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.71 E-value=0.072 Score=54.97 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|.|.+|||||||.+.|+-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 348999999999999999999854
No 422
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.70 E-value=0.11 Score=47.31 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=20.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+-|+|+|.+|+|||||.+.|..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3457799999999999999999874
No 423
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.68 E-value=0.084 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.++|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45589999999999999999863
No 424
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.68 E-value=0.34 Score=50.64 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 274 FTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 274 akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
+..+++.-.--++|+|++.........+.++.++.+.++.++.-.+
T Consensus 76 ~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~ 121 (436)
T 2hjg_A 76 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKL 121 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 3444443332367899877544445567777888888887766655
No 425
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.68 E-value=0.086 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..++.|.|.+|||||||.+.|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 348999999999999999999854
No 426
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.67 E-value=0.08 Score=54.77 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=19.9
Q ss_pred chhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHH
Q 009432 167 NALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 167 ~~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
.|+.-|+...+.. .+..=|+|.|.+|||||||+|++.
T Consensus 18 ~Id~~l~~~~~~~-~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 18 MIDRNLREDGERS-ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp --------------CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhHHHh-cCccEEEEECCCCCcHHHHHHHHH
Confidence 3555555443322 234557888999999999999995
No 427
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.66 E-value=0.086 Score=48.31 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
..+-|+|+|.+|+|||||.++|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999985
No 428
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.64 E-value=0.22 Score=50.81 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=33.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
..+.++++.|-.|.||||+|..|+..+... |..+.+++.|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK-GLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS-SCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 456799999999999999999999888776 45566667663
No 429
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.60 E-value=0.089 Score=54.81 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|.|.+|||||||.+.|+-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3458999999999999999999854
No 430
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.59 E-value=0.094 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.++|..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999975
No 431
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.56 E-value=0.09 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
...+-|+|+|.+|+|||||..+|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999985
No 432
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.54 E-value=0.063 Score=58.02 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
=|+|+|.||+|||+||+.|...
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGG
T ss_pred eeEeecCchHHHHHHHHHHHHH
Confidence 4788999999999999999865
No 433
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.53 E-value=0.097 Score=48.00 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=20.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+.-|+|+|.+|+|||||.+.|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 45699999999999999999875
No 434
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.53 E-value=0.096 Score=47.96 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=20.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+|+|.+|+|||||..+|..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999999975
No 435
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.52 E-value=0.087 Score=56.54 Aligned_cols=19 Identities=21% Similarity=0.544 Sum_probs=18.1
Q ss_pred EEEEEccCCChHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKML 203 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L 203 (535)
+++|+|.+|||||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 8999999999999999994
No 436
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.48 E-value=0.091 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|+|.+|||||||.+.|+-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4458999999999999999999854
No 437
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.47 E-value=0.11 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....-|+|+|.+|+|||||.++|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4556799999999999999999863
No 438
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.47 E-value=0.099 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+-|+|+|.+|+|||||.++|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 45699999999999999999864
No 439
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.44 E-value=0.11 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+-|+|+|.+|+|||||...|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 3567799999999999999999873
No 440
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.44 E-value=0.12 Score=46.74 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=20.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+-|+|+|.+|+|||||.+.|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999863
No 441
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=91.43 E-value=0.55 Score=50.89 Aligned_cols=35 Identities=3% Similarity=0.068 Sum_probs=26.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
++|||++.....+...++.+++..+.++.++.-.+
T Consensus 110 IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~ 144 (529)
T 2h5e_A 110 LMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKL 144 (529)
T ss_dssp EEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECT
T ss_pred EEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 88999988666666788889998899875554444
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.35 E-value=0.1 Score=52.25 Aligned_cols=23 Identities=48% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.+++|+|.+|+|||||.+.|. .+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 488999999999999999998 53
No 443
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.33 E-value=0.12 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....-|+|+|.+|+|||||...|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3457799999999999999999874
No 444
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.26 E-value=0.13 Score=57.40 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.-|+|+|.||+|||++|+.|++.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 368999999999999999999875
No 445
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.24 E-value=0.11 Score=47.43 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.+.|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999875
No 446
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.20 E-value=0.11 Score=46.64 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+-|+|+|.+|+|||||.++|..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999975
No 447
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.20 E-value=0.071 Score=55.06 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
...++.|.|.+|||||||.+.|+-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3448999999999999999999854
No 448
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=91.19 E-value=1.3 Score=45.78 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVE 209 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e 209 (535)
.+-|+++|.+++|||||..+|......
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~ 29 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAE 29 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhh
Confidence 356899999999999999999875433
No 449
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.18 E-value=0.13 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+-|+|+|.+|+|||||.++|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999874
No 450
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.17 E-value=0.15 Score=46.52 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..+=|+|+|.+|+|||||.+.|..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999874
No 451
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.16 E-value=0.14 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+|+|.+|+|||||..+|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999873
No 452
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.06 E-value=0.088 Score=56.24 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=24.7
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGG 212 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG 212 (535)
...+++|+|..|||||||+|.|+-.+...+|
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 4457889999999999999999876544334
No 453
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.06 E-value=0.14 Score=56.11 Aligned_cols=28 Identities=39% Similarity=0.571 Sum_probs=23.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENG 211 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g 211 (535)
-++++.|.||+||||+++.|...+...+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3788999999999999999988776553
No 454
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.06 E-value=0.19 Score=51.41 Aligned_cols=34 Identities=35% Similarity=0.388 Sum_probs=25.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEe
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHS 219 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS 219 (535)
-++++|.+||||||+++.|...+...+ ..+.++.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~-~~~~~~D 70 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQG-SRVIIID 70 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCC-CEEEEEe
Confidence 356789999999999999987765544 3444443
No 455
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.04 E-value=0.11 Score=47.39 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..-|+|+|.+|+|||||..++..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999874
No 456
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.98 E-value=0.25 Score=49.66 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=32.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
+.++++.|-.|.||||+|..|+..+.+. |..+.+++.|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS-GKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 6799999999999999999999888776 45566667763
No 457
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.97 E-value=0.11 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+++|+|.+|+|||||.+.|..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999999984
No 458
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.91 E-value=0.14 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..-|+|+|.||+|||||.++|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999999973
No 459
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.87 E-value=0.11 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.++.|+|.+|||||||.+.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 4889999999999999999974
No 460
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.77 E-value=0.11 Score=56.74 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
.++|+|.||+||||||+.|...+
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 78999999999999999998753
No 461
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.75 E-value=0.13 Score=52.68 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..-|+++|.+|+||||+|-.|.+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 462
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=90.73 E-value=0.36 Score=52.26 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=25.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
..++|||+-|.-||||+|.++.|.+.+.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~ 68 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMD 68 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcC
Confidence 4679999999999999999999998764
No 463
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.66 E-value=0.085 Score=57.09 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.6
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+|+++|.+||||||+.+.|...+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998653
No 464
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.65 E-value=0.098 Score=48.10 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=25.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
++|+|++.........++++++..+.++++|.-.+
T Consensus 120 i~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~ 154 (223)
T 4dhe_A 120 ILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKC 154 (223)
T ss_dssp EEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECG
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecc
Confidence 78999987544555667778887888877666554
No 465
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=90.63 E-value=2 Score=43.02 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhcc
Q 009432 271 LKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQW 345 (535)
Q Consensus 271 lk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~krf 345 (535)
.+.+.+.++.|+ .||+|..- . ...++....-++ ++|++..++.+++.+ -....+++.|+++..+.
T Consensus 184 ~~~V~~~~~~G~--~vildid~---~---g~~~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t~~~i~~rl~~a 248 (295)
T 1kjw_A 184 VQSVREVAEQGK--HCILDVSA---N---AVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDRA 248 (295)
T ss_dssp HHHHHHHHHTTC--EEEECCCT---T---HHHHHHHTTCCC-EEEEECCSSHHHHHH-HCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--eEEEEeCH---H---HHHHHHhcccCC-eEEEEECCCHHHHHH-HHhcCCHHHHHHHHHHH
Confidence 345677889999 99998531 1 111222222234 456665445666544 22344667776666554
No 466
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.58 E-value=0.12 Score=57.75 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
=|+|+|.||+|||++|+.|+..+.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999998763
No 467
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.56 E-value=0.2 Score=48.54 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...-|+++|.||+|||||..+|..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHC
Confidence 445799999999999999999974
No 468
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.53 E-value=0.14 Score=47.59 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=37.7
Q ss_pred EEEEeCCCCCHHH--HHHHHHHHhhc--CceEEEEEEecCCHH-------HHHHhhcCCCCHHHHHHHhhccc
Q 009432 285 IVIVDDRNLRVAD--FAQFWATAKRS--GYEVYILEATYKDPA-------GCAARNVHGFTLDDIERMAGQWE 346 (535)
Q Consensus 285 ~VIVDaTN~~~~~--R~~f~~LAr~~--G~~V~vIe~~~~d~e-------~ci~RNih~VpeEvIe~M~krfE 346 (535)
++|+|.++...-. ...|+...+.+ +.++++|-..+ |.. .+.......++.+.++.+.+.+.
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~-Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT-DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECG-GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh-hhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 8899998765432 34566666655 66776666555 432 12223345788888888877664
No 469
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.53 E-value=0.13 Score=46.68 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=19.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999887653
No 470
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.51 E-value=0.77 Score=48.77 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVEN 210 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~ 210 (535)
-+.|.|.+|+|||||++.|......+
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhc
Confidence 67789999999999999998876544
No 471
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.49 E-value=0.2 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..-|+++|.+|+||||+|..|.++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 457999999999999999999864
No 472
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.49 E-value=0.15 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+|.|+|.+|||||||.+.|..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 455899999999999999999985
No 473
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.42 E-value=0.18 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
-|+|+|.||+|||++|+.|++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 474
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=90.40 E-value=0.41 Score=48.55 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=25.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEV 208 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~ 208 (535)
..++|||+-|.-||||.+.++.|.+.+.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ld 100 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMD 100 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcC
Confidence 4689999999999999999999998753
No 475
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.31 E-value=0.14 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...|+|+|.||+|||||.++|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 44799999999999999999983
No 476
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=90.28 E-value=0.87 Score=49.53 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=30.0
Q ss_pred HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432 279 DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEAT 318 (535)
Q Consensus 279 k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~ 318 (535)
-+|. ++|||++---..+-...|+.|++++.++.++.=.
T Consensus 124 ~DgA--vlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK 161 (548)
T 3vqt_A 124 VDSA--LVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNK 161 (548)
T ss_dssp CSEE--EEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCce--EEEeecCCCcccccHHHHHHHHHhCCceEEEEec
Confidence 4576 9999998877777778889999999998555433
No 477
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=90.28 E-value=0.28 Score=54.95 Aligned_cols=69 Identities=6% Similarity=0.003 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhc
Q 009432 266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQ 344 (535)
Q Consensus 266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~kr 344 (535)
+|..-.+.+++.++.|+ .||+|-. . ....++....-+. ++|++..++.+++.+ -....+++.|+++..+
T Consensus 605 ~YGt~~~~v~~~~~~g~--~~ildi~---~---~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~t~~~~~~rl~~ 673 (721)
T 2xkx_A 605 LYGTSVQSVREVAEQGK--HCILDVS---A---NAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDR 673 (721)
T ss_pred cceeeHHHHHHHHHCCC--cEEEeCC---H---HHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccCCHHHHHHHHHH
Confidence 55556667888899999 9999862 2 2222222222234 455555445555443 2223355666555443
No 478
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.26 E-value=0.34 Score=50.68 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE 264 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee 264 (535)
.|+|+|.|++|||||..+|...-...-...+-+ ..|-+.....- ...-..=+..-.+......
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~-T~d~~~~~~~~----------------~~~~~~l~DT~G~~~~~~~ 65 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGV-TRDPVQDTVEW----------------YGKTFKLVDTCGVFDNPQD 65 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE----------------TTEEEEEEECTTTTSSGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCC-ccceeeEEEEE----------------CCeEEEEEECCCccccccc
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEE
Q 009432 265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYIL 315 (535)
Q Consensus 265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vI 315 (535)
.....+...+..+++.-.--++|+|++......-..+.++.++.+.++.++
T Consensus 66 ~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv 116 (439)
T 1mky_A 66 IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILV 116 (439)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEE
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE
No 479
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.24 E-value=0.31 Score=45.57 Aligned_cols=42 Identities=12% Similarity=-0.050 Sum_probs=31.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
..+++.|..+-.|+||||+|..|+..+....|..+.++..|-
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 346677778889999999999999988765244555666653
No 480
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.23 E-value=0.17 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.9
Q ss_pred EEEEEEccCCChHHHHHHHHHHHH
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
..+++.|.+|+||||+|+.+++.+
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHH
Confidence 478999999999999999999876
No 481
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.17 E-value=0.17 Score=54.06 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
...+|+|+|.+|.||||||+.+..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 345899999999999999999864
No 482
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=90.10 E-value=1 Score=49.98 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=26.0
Q ss_pred cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEE
Q 009432 280 EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILE 316 (535)
Q Consensus 280 ~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe 316 (535)
++. ++|+|++.....+...++.++++.+.++.++.
T Consensus 99 d~~--ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~ 133 (665)
T 2dy1_A 99 DAA--LVAVSAEAGVQVGTERAWTVAERLGLPRMVVV 133 (665)
T ss_dssp SEE--EEEEETTTCSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcE--EEEEcCCcccchhHHHHHHHHHHccCCEEEEe
Confidence 454 88999877655666678888888898876653
No 483
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.06 E-value=0.15 Score=47.34 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
.+=|+|+|.+|+|||||.+.|..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHhc
Confidence 35699999999999999999874
No 484
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.05 E-value=1.2 Score=43.89 Aligned_cols=37 Identities=14% Similarity=-0.221 Sum_probs=25.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEE
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH 218 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIl 218 (535)
....|.+++|.+||||||.+-.++.+.... |..+.++
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~ 53 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVI 53 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEE
Confidence 446799999999999999887666555443 3344333
No 485
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.04 E-value=0.34 Score=47.56 Aligned_cols=37 Identities=22% Similarity=0.070 Sum_probs=28.1
Q ss_pred EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432 184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD 221 (535)
Q Consensus 184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D 221 (535)
.+|.++|-.|+||||+|..|+..+.+. |..+.++..|
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D 78 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCD 78 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEES
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 344444999999999999999988876 4455566666
No 486
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.99 E-value=0.17 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHH
Q 009432 181 PDHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 181 ~~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
...+-|+|+|.+|+|||||...|.
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHS
T ss_pred ccEEEEEEECCCCCCHHHHHHHHh
Confidence 345679999999999999999864
No 487
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.98 E-value=0.13 Score=54.76 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEEEccCCChHHHHHHHHHH
Q 009432 186 IILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 186 IIL~GLPGSGKSTLAr~L~e 205 (535)
|.|+|.+|||||||.+.|..
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999974
No 488
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=89.98 E-value=0.29 Score=49.37 Aligned_cols=40 Identities=20% Similarity=0.073 Sum_probs=32.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD 222 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD 222 (535)
.+.++|+.|-.|.||||+|..|+..+.+. |..+.+++.|-
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~-G~rVllvD~D~ 57 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKV-RSSVLLISTDP 57 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTS-SSCEEEEECCT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 35688999999999999999999988765 45566667663
No 489
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.90 E-value=0.071 Score=48.03 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=6.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRDL 206 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e~ 206 (535)
..+-|+|+|.+|+|||||.+.|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999988753
No 490
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=89.73 E-value=0.36 Score=50.43 Aligned_cols=65 Identities=6% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhhcc
Q 009432 272 KAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAGQW 345 (535)
Q Consensus 272 k~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~krf 345 (535)
+.+++.++.|+ .||+|- ...-.++ +-...-+. ++|++..++.+++.+|... ..+++.+++|...-
T Consensus 280 ~~V~~~~~~Gk--~~iLdI---d~qg~~~---l~~~~~~p-~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a 346 (391)
T 3tsz_A 280 HTIKQIIDQDK--HALLDV---TPNAVDR---LNYAQWYP-IVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS 346 (391)
T ss_dssp HHHHHHHTTTC--EEEECC---CHHHHHH---HHHTTCCC-EEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHH
T ss_pred HHHHHHHHcCC--EEEEEe---CHHHHHH---HHhCCCCC-EEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 45677889999 999996 2222222 22222233 4566654566666543222 23455666665443
No 491
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=89.73 E-value=0.16 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
....|.|+|+||+|||||.+.|..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 356899999999999999999985
No 492
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=89.72 E-value=0.96 Score=50.51 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=27.8
Q ss_pred HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432 279 DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY 319 (535)
Q Consensus 279 k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~ 319 (535)
.++. ++|||++......-..++..+++++.++.++.=.+
T Consensus 101 aD~~--ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKi 139 (691)
T 1dar_A 101 LDGA--IVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKM 139 (691)
T ss_dssp CSEE--EEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCEE--EEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECC
Confidence 3455 89999987665555567778888898886664444
No 493
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.70 E-value=0.19 Score=45.03 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+-+.+++|..||||||+..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999999999987544
No 494
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.69 E-value=0.2 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHH
Q 009432 182 DHFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 182 ~~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
+++-|+|+|.+|+|||||..+|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999999973
No 495
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.68 E-value=1.9 Score=50.12 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.4
Q ss_pred cEEEEEEccCCChHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKML 203 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L 203 (535)
..+++|+|+.|||||||.|.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 458999999999999999998
No 496
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.66 E-value=0.19 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.454 Sum_probs=20.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHH
Q 009432 183 HFAIILRGLPGSGKSYIAKMLRD 205 (535)
Q Consensus 183 ~~LIIL~GLPGSGKSTLAr~L~e 205 (535)
..-|+|+|.||+|||||.++|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 35689999999999999999973
No 497
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.58 E-value=1.5 Score=41.93 Aligned_cols=125 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh---------
Q 009432 185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME--------- 255 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e--------- 255 (535)
+|++.+-+|.||||.|-.++-+...+ |..+.++.-.-=.....+ ..+.+++ .
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQF~Kg~~~~gE-----------------~~~l~~L-~v~~~~~g~g 90 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQFIKGTWPNGE-----------------RNLLEPH-GVEFQVMATG 90 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEESSCCSSCCHH-----------------HHHHGGG-TCEEEECCTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCCCCccH-----------------HHHHHhC-CcEEEEcccc
Q ss_pred ccCch---HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCC----CHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432 256 YCYEP---EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNL----RVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR 328 (535)
Q Consensus 256 y~y~~---e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~----~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R 328 (535)
|.++. +......+..+..+++.+..+.+.+||+|-.++ ..-...+++++....--...+|.---..++.+++.
T Consensus 91 f~~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 91 FTWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
No 498
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.58 E-value=0.18 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=0.0
Q ss_pred CCCcEEEEEEccCCChHHHHHHHHH
Q 009432 180 RPDHFAIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 180 r~~~~LIIL~GLPGSGKSTLAr~L~ 204 (535)
..+..-|+|+|.||+|||||..+|.
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHH
No 499
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.56 E-value=0.17 Score=56.32 Aligned_cols=30 Identities=30% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432 178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLE 207 (535)
Q Consensus 178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l 207 (535)
+.+..+.-++|+|.||+||||+|+.|+..+
T Consensus 202 l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 202 LCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp HTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhccCCCCeEEEcCCCCCHHHHHHHHHHHH
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.55 E-value=0.17 Score=54.95 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=0.0
Q ss_pred EEEEEccCCChHHHHHHHHH
Q 009432 185 AIILRGLPGSGKSYIAKMLR 204 (535)
Q Consensus 185 LIIL~GLPGSGKSTLAr~L~ 204 (535)
++.|+|..|||||||.+.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Done!