BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009433
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ATG|A Chain A, Taf6 C-Terminal Domain From Antonospora Locustae
Length = 196
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 11/185 (5%)
Query: 166 HVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSL 225
H+L KELQLYFDKI +S S + A+ L +SGL LVPYF ISE ++ +S
Sbjct: 3 HMLPKELQLYFDKI----LSMIKSDMKDIAIECLEKESGLQQLVPYFIQHISE-LILKSF 57
Query: 226 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 285
K +L + + SL++N H+ I+PYLHQ++PS++TC++ K + + D+R A
Sbjct: 58 KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSA 111
Query: 286 DLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILP 345
D++ I + Y+ L RV +TL ++DP +S YGA+ L+ L +VV+ +I
Sbjct: 112 DIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIRE 171
Query: 346 NLELY 350
+ E Y
Sbjct: 172 HAEEY 176
>pdb|1TAF|B Chain B, Drosophila Tbp Associated Factors Dtafii42DTAFII62
HETEROTETRAMER
Length = 70
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDV 61
S + E+++VIA+SIGV +LS D A LA DV +++ I+Q+A K M HA R L+ D+
Sbjct: 5 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDI 64
Query: 62 DSALNL 67
D +L +
Sbjct: 65 DMSLKV 70
>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
Histone Hmfb From Methanothermus Fervidus
Length = 69
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDS 63
+P I I + G +S D + LA +E R+I EAIK RHA R + A D++
Sbjct: 3 LPIAPIGRIIKDAGAERVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDIEL 62
Query: 64 AL 65
A+
Sbjct: 63 AV 64
>pdb|1BFM|A Chain A, Histone B From Methanothermus Fervidus
pdb|1BFM|B Chain B, Histone B From Methanothermus Fervidus
pdb|1A7W|A Chain A, Crystal Structure Of The Histone Hmfb From
Methanothermus Fervidus
Length = 69
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDS 63
+P I I + G +S D + LA +E R+I EAIK RHA R + A D++
Sbjct: 3 LPIAPIGRIIKDAGAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIEL 62
Query: 64 AL 65
A+
Sbjct: 63 AV 64
>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 69
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M +P I I ++ G +S D +ALA +E EI EA+K +HA R + A D
Sbjct: 1 MGELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60
Query: 61 VDSA 64
++ A
Sbjct: 61 IELA 64
>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 68
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDS 63
+P I I ++ G +S D +ALA +E EI EA+K +HA R + A D++
Sbjct: 3 LPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIEL 62
Query: 64 A 64
A
Sbjct: 63 A 63
>pdb|2PGH|B Chain B, Structure Determination Of Aquomet Porcine Hemoglobin At
2.8 Angstrom Resolution
pdb|2PGH|D Chain D, Structure Determination Of Aquomet Porcine Hemoglobin At
2.8 Angstrom Resolution
pdb|1QPW|B Chain B, Crystal Structure Determination Of Porcine Hemoglobin At
1.8a Resolution
pdb|1QPW|D Chain D, Crystal Structure Determination Of Porcine Hemoglobin At
1.8a Resolution
Length = 146
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 223 RSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRN 282
+ L N FA + S L +H++P +++ +VI ++++RLG+ F+ D++
Sbjct: 76 KHLDNLKGTFAKL----SELHCDQLHVDPENFRLLGNVIVVVLARRLGHDFNP---DVQA 128
Query: 283 FVADLIASICTRFGHVYQ 300
++A + H Y
Sbjct: 129 AFQKVVAGVANALAHKYH 146
>pdb|4F4O|B Chain B, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|E Chain E, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|H Chain H, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|K Chain K, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 146
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 223 RSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRN 282
+ L N FA + S L +H++P +++ +VI ++++RLG+ F+ N ++
Sbjct: 76 KHLDNLKGTFAKL----SELHCDQLHVDPENFRLLGNVIVVVLARRLGHDFNPN---VQA 128
Query: 283 FVADLIASICTRFGHVYQ 300
++A + H Y
Sbjct: 129 AFQKVVAGVANALAHKYH 146
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 31/167 (18%)
Query: 131 QPAIPENAPVDAVSDGRRSEYRE-DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNS 189
Q ++ E P++ V++G S Y+E G+S + ++P HV +K + LY K ++
Sbjct: 354 QESLKEYFPIEVVTEGLLSIYQELLGLSFE-QVPDAHVWNKSVSLYTVK------DKATG 406
Query: 190 TVFKQALLSL---------AMDSGLHP--LVPYFTYFISEEVVTRSLKNFSLLFALMRVA 238
V Q L L A GL P L+P + +S V + NFS A
Sbjct: 407 EVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMS---VAALVVNFSQPVA----G 459
Query: 239 R-SLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 284
R SLLR H +E Y H+ V+ + ++ RFS + + R+FV
Sbjct: 460 RPSLLR--HDEVETYFHE-FGHVMHQICAQTDFARFSGTNVE-RDFV 502
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,943,892
Number of Sequences: 62578
Number of extensions: 581857
Number of successful extensions: 1741
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 11
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)