Query 009433
Match_columns 535
No_of_seqs 171 out of 320
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 13:03:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2549 Transcription initiati 100.0 2E-115 5E-120 924.8 36.2 529 2-535 9-576 (576)
2 COG5095 TAF6 Transcription ini 100.0 4E-103 9E-108 782.8 24.6 388 2-393 4-413 (450)
3 cd08050 TAF6 TATA Binding Prot 100.0 2.6E-96 6E-101 764.9 32.1 333 5-339 1-343 (343)
4 PF07571 DUF1546: Protein of u 100.0 1.3E-30 2.7E-35 224.5 5.3 91 260-350 1-92 (92)
5 PF02969 TAF: TATA box binding 99.9 2.2E-25 4.8E-30 180.5 8.3 66 1-66 1-66 (66)
6 smart00803 TAF TATA box bindin 99.8 6.4E-20 1.4E-24 148.6 8.9 65 2-66 1-65 (65)
7 cd00076 H4 Histone H4, one of 99.5 1.4E-13 3E-18 117.1 9.1 73 3-76 13-85 (85)
8 PLN00035 histone H4; Provision 99.5 1.6E-13 3.5E-18 120.2 9.5 74 3-77 29-102 (103)
9 PTZ00015 histone H4; Provision 99.4 4.7E-13 1E-17 117.3 9.2 73 3-76 30-102 (102)
10 COG2036 HHT1 Histones H3 and H 98.9 1.5E-09 3.3E-14 93.5 6.6 70 2-71 18-87 (91)
11 smart00417 H4 Histone H4. 98.9 3.7E-09 8E-14 87.9 6.7 62 3-64 13-74 (74)
12 cd07979 TAF9 TATA Binding Prot 98.7 7.8E-08 1.7E-12 86.8 9.0 71 6-79 4-74 (117)
13 smart00576 BTP Bromodomain tra 98.4 1.2E-06 2.7E-11 73.2 8.5 65 6-70 9-73 (77)
14 PF00125 Histone: Core histone 98.2 2.1E-06 4.7E-11 70.6 6.2 64 4-67 6-74 (75)
15 PF00808 CBFD_NFYB_HMF: Histon 98.2 9.1E-06 2E-10 65.5 7.8 63 3-65 2-65 (65)
16 cd07981 TAF12 TATA Binding Pro 98.1 2.2E-05 4.8E-10 65.0 8.9 64 4-67 2-66 (72)
17 KOG3467 Histone H4 [Chromatin 97.9 4.2E-05 9.1E-10 65.1 7.8 73 4-77 30-102 (103)
18 PF07524 Bromo_TP: Bromodomain 97.8 0.00013 2.9E-09 60.7 8.7 65 6-70 9-73 (77)
19 cd00074 H2A Histone 2A; H2A is 97.7 0.00013 2.7E-09 65.9 7.3 65 3-67 20-85 (115)
20 smart00428 H3 Histone H3. 97.6 0.00018 3.9E-09 63.9 7.7 63 8-70 38-103 (105)
21 PF02291 TFIID-31kDa: Transcri 97.2 0.0011 2.4E-08 61.1 7.7 62 7-68 16-77 (129)
22 PF15630 CENP-S: Kinetochore c 97.1 0.0022 4.8E-08 53.9 7.7 59 8-66 10-71 (76)
23 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.0038 8.2E-08 54.7 6.9 77 231-320 7-83 (97)
24 PLN00160 histone H3; Provision 96.4 0.01 2.2E-07 52.2 6.9 63 8-70 30-94 (97)
25 PTZ00018 histone H3; Provision 96.4 0.0098 2.1E-07 55.2 6.8 63 8-71 71-135 (136)
26 PLN00121 histone H3; Provision 96.4 0.01 2.2E-07 55.1 6.8 62 8-70 71-134 (136)
27 PLN00161 histone H3; Provision 96.3 0.016 3.6E-07 53.6 8.0 66 8-73 64-131 (135)
28 KOG3334 Transcription initiati 96.3 0.017 3.8E-07 53.8 7.9 63 8-70 18-80 (148)
29 KOG0869 CCAAT-binding factor, 95.9 0.032 7E-07 52.7 7.8 69 3-71 32-102 (168)
30 cd08048 TAF11 TATA Binding Pro 95.7 0.062 1.3E-06 46.2 8.1 66 3-68 16-84 (85)
31 PF15511 CENP-T: Centromere ki 94.9 0.061 1.3E-06 58.5 7.1 57 4-60 352-414 (414)
32 PF12348 CLASP_N: CLASP N term 94.5 0.26 5.7E-06 48.1 9.9 180 188-389 20-214 (228)
33 COG5094 TAF9 Transcription ini 94.3 0.1 2.2E-06 47.6 5.9 61 8-68 19-82 (145)
34 KOG1142 Transcription initiati 94.2 0.12 2.6E-06 52.6 6.9 71 16-87 168-239 (258)
35 PF03847 TFIID_20kDa: Transcri 94.2 0.24 5.3E-06 40.8 7.5 61 7-67 3-64 (68)
36 KOG4336 TBP-associated transcr 93.5 0.22 4.7E-06 51.8 7.2 69 8-76 10-80 (323)
37 smart00414 H2A Histone 2A. 93.4 0.25 5.4E-06 44.2 6.6 65 3-67 9-74 (106)
38 KOG2389 Predicted bromodomain 93.2 0.23 5E-06 52.5 7.0 67 5-71 31-97 (353)
39 COG5262 HTA1 Histone H2A [Chro 93.0 0.21 4.5E-06 45.2 5.4 65 2-66 25-90 (132)
40 KOG0870 DNA polymerase epsilon 92.8 0.4 8.8E-06 45.9 7.4 71 3-73 10-83 (172)
41 KOG2023 Nuclear transport rece 92.8 1.1 2.4E-05 51.3 11.9 118 235-358 277-443 (885)
42 PLN00154 histone H2A; Provisio 92.6 0.4 8.7E-06 44.6 6.9 65 3-67 38-104 (136)
43 PF04719 TAFII28: hTAFII28-lik 92.1 0.61 1.3E-05 40.6 7.1 66 2-67 22-89 (90)
44 KOG1756 Histone 2A [Chromatin 92.1 0.36 7.9E-06 44.3 5.9 64 3-66 27-91 (131)
45 smart00427 H2B Histone H2B. 91.8 0.46 1E-05 41.3 5.9 48 21-68 20-67 (89)
46 PF02985 HEAT: HEAT repeat; I 91.8 0.34 7.3E-06 33.3 4.2 30 256-294 1-30 (31)
47 KOG2171 Karyopherin (importin) 91.0 3.7 8E-05 49.5 14.1 254 174-441 4-308 (1075)
48 PF13513 HEAT_EZ: HEAT-like re 90.9 0.15 3.3E-06 38.9 2.0 55 278-334 1-55 (55)
49 PTZ00017 histone H2A; Provisio 90.8 0.57 1.2E-05 43.6 5.9 64 4-67 28-92 (134)
50 PTZ00463 histone H2B; Provisio 90.4 0.87 1.9E-05 41.4 6.5 48 21-68 47-94 (117)
51 KOG2023 Nuclear transport rece 89.8 1.4 3.1E-05 50.4 9.0 194 194-405 377-570 (885)
52 PLN00158 histone H2B; Provisio 89.6 1 2.2E-05 41.0 6.3 48 21-68 46-93 (116)
53 KOG0212 Uncharacterized conser 89.2 4.9 0.00011 45.4 12.5 148 176-358 24-176 (675)
54 PLN00157 histone H2A; Provisio 89.2 0.79 1.7E-05 42.6 5.5 64 4-67 27-91 (132)
55 PLN00156 histone H2AX; Provisi 89.2 0.62 1.3E-05 43.6 4.8 64 4-67 30-94 (139)
56 KOG1745 Histones H3 and H4 [Ch 88.8 0.26 5.5E-06 45.9 2.0 51 20-70 85-135 (137)
57 PLN00153 histone H2A; Provisio 88.2 1.1 2.4E-05 41.5 5.7 64 4-67 25-89 (129)
58 PF12460 MMS19_C: RNAPII trans 87.2 16 0.00035 39.5 15.0 192 194-394 24-234 (415)
59 KOG1824 TATA-binding protein-i 87.1 8.1 0.00018 46.2 13.0 136 205-352 514-654 (1233)
60 cd00020 ARM Armadillo/beta-cat 86.4 2.7 5.8E-05 35.6 6.9 94 208-317 8-103 (120)
61 PF02269 TFIID-18kDa: Transcri 85.7 0.93 2E-05 39.5 3.6 49 19-67 18-66 (93)
62 KOG1242 Protein containing ada 85.0 17 0.00037 41.3 13.9 170 201-392 248-455 (569)
63 PF05236 TAF4: Transcription i 84.1 0.95 2.1E-05 46.2 3.4 63 7-69 51-119 (264)
64 PRK07452 DNA polymerase III su 84.1 2.8 6.1E-05 43.4 7.0 60 6-66 136-197 (326)
65 cd07978 TAF13 The TATA Binding 84.0 3.3 7.2E-05 36.1 6.3 58 9-67 8-66 (92)
66 cd08045 TAF4 TATA Binding Prot 83.5 3.7 8.1E-05 40.6 7.3 64 6-69 51-120 (212)
67 PTZ00252 histone H2A; Provisio 83.0 3.8 8.1E-05 38.2 6.5 64 4-67 26-92 (134)
68 KOG0871 Class 2 transcription 82.9 6.8 0.00015 37.1 8.1 67 4-70 13-81 (156)
69 PF09415 CENP-X: CENP-S associ 82.8 1.7 3.7E-05 36.3 3.8 61 5-66 1-66 (72)
70 KOG3423 Transcription initiati 81.5 7.6 0.00016 37.5 8.1 68 3-70 86-167 (176)
71 PF14911 MMS22L_C: S-phase gen 80.7 12 0.00025 40.7 10.2 120 230-357 227-352 (373)
72 PRK06585 holA DNA polymerase I 80.5 4.1 8.9E-05 42.6 6.7 60 7-67 149-209 (343)
73 TIGR01128 holA DNA polymerase 80.4 5.7 0.00012 40.2 7.5 60 7-67 118-177 (302)
74 PRK05574 holA DNA polymerase I 80.3 4.4 9.5E-05 41.8 6.7 60 7-67 153-212 (340)
75 KOG1242 Protein containing ada 79.4 44 0.00095 38.2 14.4 147 175-336 134-283 (569)
76 COG1466 HolA DNA polymerase II 79.1 5.2 0.00011 42.1 6.9 59 7-66 147-205 (334)
77 cd00020 ARM Armadillo/beta-cat 77.7 14 0.0003 31.1 8.0 70 207-292 49-119 (120)
78 PRK07914 hypothetical protein; 76.6 5.7 0.00012 41.4 6.3 59 6-66 134-192 (320)
79 KOG3219 Transcription initiati 75.7 3.6 7.9E-05 40.5 4.2 70 2-71 111-181 (195)
80 KOG1241 Karyopherin (importin) 75.7 48 0.001 39.1 13.5 151 224-387 513-674 (859)
81 PRK05629 hypothetical protein; 75.6 7.4 0.00016 40.5 6.8 57 7-65 133-189 (318)
82 PRK05907 hypothetical protein; 75.6 6.4 0.00014 41.4 6.4 60 6-66 140-201 (311)
83 PRK08487 DNA polymerase III su 75.1 8.6 0.00019 40.3 7.2 58 6-66 141-198 (328)
84 PF13654 AAA_32: AAA domain; P 72.7 11 0.00024 42.4 7.6 61 8-68 435-506 (509)
85 PF13251 DUF4042: Domain of un 72.4 24 0.00051 34.5 9.0 139 234-384 6-177 (182)
86 PF03540 TFIID_30kDa: Transcri 72.2 22 0.00049 27.9 7.0 48 3-50 2-49 (51)
87 PF11864 DUF3384: Domain of un 70.0 78 0.0017 35.0 13.4 159 168-334 64-283 (464)
88 TIGR02902 spore_lonB ATP-depen 66.3 20 0.00044 40.4 8.0 61 9-70 272-334 (531)
89 PRK09687 putative lyase; Provi 65.5 36 0.00079 35.1 9.2 64 255-337 159-222 (280)
90 KOG1744 Histone H2B [Chromatin 64.3 18 0.00039 33.5 5.9 50 16-68 54-103 (127)
91 COG5247 BUR6 Class 2 transcrip 64.3 22 0.00047 31.8 6.1 63 3-67 23-88 (113)
92 TIGR02397 dnaX_nterm DNA polym 63.2 16 0.00035 37.9 6.1 58 7-66 183-240 (355)
93 KOG2171 Karyopherin (importin) 61.6 1.6E+02 0.0035 36.2 14.4 183 194-394 331-514 (1075)
94 PRK09687 putative lyase; Provi 61.5 27 0.00059 36.1 7.4 57 275-337 102-158 (280)
95 PF01602 Adaptin_N: Adaptin N 61.4 58 0.0013 35.5 10.4 87 169-264 108-201 (526)
96 KOG0915 Uncharacterized conser 61.3 23 0.00051 44.4 7.6 80 199-294 990-1069(1702)
97 PF12717 Cnd1: non-SMC mitotic 59.8 69 0.0015 30.5 9.4 103 277-394 1-106 (178)
98 PRK12402 replication factor C 58.5 22 0.00047 36.5 6.1 58 7-67 191-248 (337)
99 PF01602 Adaptin_N: Adaptin N 58.1 40 0.00086 36.8 8.4 68 253-334 112-179 (526)
100 PF03378 CAS_CSE1: CAS/CSE pro 58.0 93 0.002 34.4 11.1 141 248-410 19-176 (435)
101 KOG1824 TATA-binding protein-i 55.5 2.5E+02 0.0053 34.5 14.2 144 227-384 226-405 (1233)
102 PF10508 Proteasom_PSMB: Prote 54.8 87 0.0019 35.1 10.4 159 172-343 35-199 (503)
103 PF12719 Cnd3: Nuclear condens 53.3 32 0.00069 35.5 6.3 58 275-334 75-141 (298)
104 PRK14964 DNA polymerase III su 52.0 30 0.00066 38.8 6.2 58 7-66 182-239 (491)
105 PF06371 Drf_GBD: Diaphanous G 52.0 13 0.00028 35.0 2.9 78 203-292 107-186 (187)
106 TIGR00764 lon_rel lon-related 51.6 48 0.001 38.1 7.9 60 9-68 318-391 (608)
107 COG5248 TAF19 Transcription in 51.3 37 0.00081 30.8 5.4 43 23-67 30-72 (126)
108 COG5150 Class 2 transcription 50.9 71 0.0015 29.7 7.3 68 4-71 12-81 (148)
109 KOG3901 Transcription initiati 50.8 38 0.00082 30.5 5.3 42 23-67 30-71 (109)
110 PF03224 V-ATPase_H_N: V-ATPas 50.3 2.8E+02 0.0062 28.7 12.8 157 166-344 24-188 (312)
111 KOG0213 Splicing factor 3b, su 49.9 1.1E+02 0.0024 36.4 10.1 204 168-384 335-585 (1172)
112 COG5208 HAP5 CCAAT-binding fac 49.6 29 0.00062 35.0 4.9 67 4-70 110-177 (286)
113 PRK09087 hypothetical protein; 49.0 81 0.0018 31.4 8.2 60 8-68 161-222 (226)
114 TIGR03015 pepcterm_ATPase puta 46.9 73 0.0016 31.6 7.6 58 12-69 204-267 (269)
115 PF12717 Cnd1: non-SMC mitotic 46.8 2.2E+02 0.0048 27.0 10.5 77 202-297 20-97 (178)
116 KOG1967 DNA repair/transcripti 46.6 81 0.0017 38.0 8.6 142 173-320 862-1010(1030)
117 KOG1659 Class 2 transcription 45.7 70 0.0015 32.2 6.9 67 3-69 13-80 (224)
118 PF08506 Cse1: Cse1; InterPro 45.5 52 0.0011 35.5 6.6 105 276-380 223-336 (370)
119 PRK14970 DNA polymerase III su 45.3 45 0.00098 35.2 6.1 57 8-66 175-231 (367)
120 PF13646 HEAT_2: HEAT repeats; 44.8 77 0.0017 25.6 6.2 51 275-337 11-61 (88)
121 KOG0211 Protein phosphatase 2A 44.7 2.5E+02 0.0055 33.5 12.4 140 201-350 431-604 (759)
122 PTZ00429 beta-adaptin; Provisi 43.8 3.4E+02 0.0074 32.3 13.3 76 247-335 132-207 (746)
123 KOG1248 Uncharacterized conser 43.6 98 0.0021 38.2 8.9 112 170-299 781-904 (1176)
124 PF05004 IFRD: Interferon-rela 42.6 2.8E+02 0.006 29.2 11.3 98 248-355 79-184 (309)
125 KOG1658 DNA polymerase epsilon 42.4 22 0.00047 34.1 2.7 69 1-69 57-126 (162)
126 PRK14961 DNA polymerase III su 42.2 38 0.00083 36.1 5.0 61 8-70 186-246 (363)
127 PF13513 HEAT_EZ: HEAT-like re 41.8 27 0.00058 26.4 2.8 42 241-291 14-55 (55)
128 PRK09111 DNA polymerase III su 41.6 54 0.0012 37.7 6.3 57 7-65 198-254 (598)
129 PRK06620 hypothetical protein; 41.1 65 0.0014 31.8 6.1 58 8-66 155-214 (214)
130 PF12348 CLASP_N: CLASP N term 40.3 1.2E+02 0.0027 29.3 7.9 64 227-299 144-212 (228)
131 KOG1823 DRIM (Down-regulated i 40.1 71 0.0015 40.0 7.2 83 278-362 578-663 (1364)
132 COG5162 Transcription initiati 39.8 1.4E+02 0.0031 28.9 7.8 68 3-70 88-188 (197)
133 PRK00440 rfc replication facto 39.4 70 0.0015 32.4 6.2 57 7-66 168-224 (319)
134 PF12074 DUF3554: Domain of un 39.4 1.5E+02 0.0033 31.0 8.9 91 215-316 164-255 (339)
135 PRK08727 hypothetical protein; 38.6 85 0.0019 31.2 6.5 57 9-67 171-230 (233)
136 KOG1967 DNA repair/transcripti 38.4 2.3E+02 0.0049 34.5 10.6 118 245-378 899-1021(1030)
137 PRK14953 DNA polymerase III su 38.1 67 0.0015 36.0 6.2 57 7-65 185-241 (486)
138 PRK14955 DNA polymerase III su 38.0 70 0.0015 34.5 6.2 58 8-66 194-255 (397)
139 PF08623 TIP120: TATA-binding 37.5 1.7E+02 0.0036 28.5 8.0 127 249-383 3-139 (169)
140 PRK00411 cdc6 cell division co 35.3 1.3E+02 0.0029 31.7 7.8 49 20-68 228-282 (394)
141 PRK08084 DNA replication initi 35.1 1.2E+02 0.0027 30.1 7.0 57 9-66 176-234 (235)
142 PRK15338 type III secretion sy 34.0 3E+02 0.0065 30.1 10.0 136 175-330 81-248 (372)
143 COG1938 Archaeal enzymes of AT 34.0 1E+02 0.0023 31.6 6.3 46 8-54 192-237 (244)
144 KOG1241 Karyopherin (importin) 33.8 4.7E+02 0.01 31.4 12.0 134 208-354 361-503 (859)
145 KOG1851 Uncharacterized conser 33.5 1.3E+02 0.0029 38.3 8.0 112 208-334 1523-1636(1710)
146 PRK14962 DNA polymerase III su 33.5 1E+02 0.0022 34.5 6.7 58 8-67 184-241 (472)
147 TIGR03420 DnaA_homol_Hda DnaA 33.1 1.8E+02 0.0038 28.0 7.6 56 9-66 168-226 (226)
148 COG1067 LonB Predicted ATP-dep 32.5 1.2E+02 0.0027 35.3 7.3 60 9-68 327-399 (647)
149 PRK14954 DNA polymerase III su 31.8 77 0.0017 36.7 5.5 58 8-66 194-255 (620)
150 PRK06645 DNA polymerase III su 31.8 1E+02 0.0023 34.8 6.5 60 7-67 194-255 (507)
151 COG5064 SRP1 Karyopherin (impo 31.3 2E+02 0.0043 31.4 8.0 169 168-359 63-260 (526)
152 PRK13800 putative oxidoreducta 30.6 4.8E+02 0.01 31.5 12.1 51 275-336 786-836 (897)
153 KOG0212 Uncharacterized conser 30.3 5.5E+02 0.012 29.8 11.5 139 207-360 163-302 (675)
154 PF10274 ParcG: Parkin co-regu 30.3 1.3E+02 0.0029 29.5 6.2 92 202-297 71-168 (183)
155 TIGR00635 ruvB Holliday juncti 30.1 2E+02 0.0043 29.2 7.8 60 8-68 167-229 (305)
156 PRK14963 DNA polymerase III su 29.3 1.1E+02 0.0024 34.4 6.2 56 7-65 182-237 (504)
157 KOG0567 HEAT repeat-containing 28.6 63 0.0014 33.8 3.7 74 306-380 4-97 (289)
158 PF12755 Vac14_Fab1_bd: Vacuol 28.5 3.7E+02 0.0081 23.4 8.1 81 287-373 9-89 (97)
159 PF12231 Rif1_N: Rap1-interact 28.5 7.6E+02 0.016 26.5 17.8 200 165-384 80-306 (372)
160 PF12460 MMS19_C: RNAPII trans 28.3 7.9E+02 0.017 26.6 14.2 200 171-392 186-405 (415)
161 PRK14971 DNA polymerase III su 28.1 83 0.0018 36.3 5.0 58 7-66 187-244 (614)
162 PF10363 DUF2435: Protein of u 27.9 1.9E+02 0.0042 25.0 6.1 66 278-347 17-82 (92)
163 PRK06893 DNA replication initi 27.5 1.8E+02 0.004 28.7 6.8 58 8-66 169-228 (229)
164 KOG2032 Uncharacterized conser 27.2 3.7E+02 0.008 30.6 9.4 107 279-389 273-379 (533)
165 TIGR00362 DnaA chromosomal rep 27.1 1.5E+02 0.0033 31.8 6.6 58 8-67 276-336 (405)
166 PRK14959 DNA polymerase III su 26.9 1.4E+02 0.0029 34.8 6.4 56 8-65 186-241 (624)
167 PTZ00361 26 proteosome regulat 26.8 65 0.0014 35.7 3.7 37 31-67 387-423 (438)
168 PRK00080 ruvB Holliday junctio 26.7 2.4E+02 0.0052 29.4 7.8 62 8-70 188-252 (328)
169 PRK04195 replication factor C 26.6 1.5E+02 0.0032 32.9 6.5 55 8-65 168-222 (482)
170 PF14500 MMS19_N: Dos2-interac 26.1 4.3E+02 0.0093 27.2 9.3 110 269-384 4-114 (262)
171 COG5181 HSH155 U2 snRNP splice 26.0 5.2E+02 0.011 30.5 10.4 124 251-384 600-762 (975)
172 PRK06305 DNA polymerase III su 25.8 1.5E+02 0.0033 32.8 6.3 56 8-65 188-243 (451)
173 TIGR02928 orc1/cdc6 family rep 25.7 3.1E+02 0.0067 28.5 8.4 49 20-68 220-274 (365)
174 smart00567 EZ_HEAT E-Z type HE 25.3 1.4E+02 0.003 19.8 3.8 29 278-316 1-29 (30)
175 PF08064 UME: UME (NUC010) dom 25.3 2.4E+02 0.0052 24.9 6.4 74 306-385 12-87 (107)
176 PRK05563 DNA polymerase III su 25.2 1.5E+02 0.0033 33.8 6.4 57 7-65 185-241 (559)
177 PRK14958 DNA polymerase III su 25.2 1.6E+02 0.0035 33.2 6.5 64 8-73 186-249 (509)
178 COG5593 Nucleic-acid-binding p 25.2 75 0.0016 36.2 3.8 111 210-334 174-294 (821)
179 PRK14950 DNA polymerase III su 25.0 1.5E+02 0.0032 33.9 6.3 57 8-66 187-243 (585)
180 KOG0567 HEAT repeat-containing 23.7 1E+02 0.0022 32.2 4.2 72 307-379 156-247 (289)
181 PRK08691 DNA polymerase III su 23.7 1.9E+02 0.0041 34.2 6.8 60 7-68 185-244 (709)
182 PRK13800 putative oxidoreducta 23.4 3.7E+02 0.0081 32.4 9.5 40 179-219 747-787 (897)
183 PRK13765 ATP-dependent proteas 23.2 2.9E+02 0.0063 32.2 8.2 58 9-66 324-398 (637)
184 PRK08451 DNA polymerase III su 23.1 1.9E+02 0.0041 33.0 6.5 56 8-65 184-239 (535)
185 KOG0166 Karyopherin (importin) 23.1 6.6E+02 0.014 28.7 10.6 134 207-357 109-252 (514)
186 PRK14960 DNA polymerase III su 23.0 1.1E+02 0.0025 35.9 4.8 63 7-71 184-246 (702)
187 PF10441 Urb2: Urb2/Npa2 famil 22.9 7.4E+02 0.016 24.4 12.6 85 230-315 4-92 (223)
188 PF09862 DUF2089: Protein of u 22.7 1E+02 0.0022 28.1 3.5 26 288-313 52-77 (113)
189 KOG1657 CCAAT-binding factor, 22.2 1.4E+02 0.0031 30.4 4.9 66 4-69 75-141 (236)
190 PF10274 ParcG: Parkin co-regu 22.1 3.1E+02 0.0067 27.0 7.0 61 236-305 60-121 (183)
191 PF03542 Tuberin: Tuberin; In 21.9 7.6E+02 0.017 26.8 10.5 90 227-316 155-249 (356)
192 TIGR01242 26Sp45 26S proteasom 21.8 94 0.002 33.0 3.7 33 35-67 330-362 (364)
193 PRK06647 DNA polymerase III su 21.6 2E+02 0.0043 33.0 6.4 58 8-67 186-243 (563)
194 KOG1248 Uncharacterized conser 21.5 1.2E+03 0.026 29.4 12.8 150 280-439 799-961 (1176)
195 KOG2274 Predicted importin 9 [ 21.1 8.9E+02 0.019 29.7 11.4 149 230-394 633-786 (1005)
196 PF04695 Pex14_N: Peroxisomal 20.8 53 0.0012 30.4 1.4 35 38-72 3-51 (136)
197 PF08454 RIH_assoc: RyR and IP 20.8 3.1E+02 0.0067 24.6 6.2 78 226-318 5-85 (109)
198 PRK14087 dnaA chromosomal repl 20.6 2.2E+02 0.0048 31.5 6.4 60 8-67 283-347 (450)
199 PF10521 DUF2454: Protein of u 20.5 2.9E+02 0.0062 28.4 6.8 89 237-334 100-204 (282)
200 PF13646 HEAT_2: HEAT repeats; 20.3 4.5E+02 0.0097 20.9 7.8 85 179-289 4-88 (88)
No 1
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-115 Score=924.78 Aligned_cols=529 Identities=40% Similarity=0.602 Sum_probs=449.9
Q ss_pred CCCC-hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCCCC
Q 009433 2 SIVP-KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGD 80 (535)
Q Consensus 2 s~~~-~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~ 80 (535)
++|+ +|+++.+|||+||++|+||+|+.||+||||||+||+|+|.|||+|+||++||++||+.||+++|+||+|||.+++
T Consensus 9 ~v~s~~Es~k~vAEslGi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~nVep~yg~~s~~ 88 (576)
T KOG2549|consen 9 TVVSPKESVKVVAESLGITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLNVEPLYGFGAQE 88 (576)
T ss_pred cccCcHHHHHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcccccccCcccCc
Confidence 4666 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCC-CceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcC--------CccCcc---
Q 009433 81 SLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDA--------VSDGRR--- 148 (535)
Q Consensus 81 pl~f~~~~g~-~~ly~~eD~evdl~~ii~~~lPk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~--------p~~~k~--- 148 (535)
+++|+++.|+ +++||.+|+||||++++++|+||+|+++++++|||+||||||+|||||++.. +....+
T Consensus 89 ~i~fr~a~~~~r~ly~~~d~EVD~d~~i~~plpkvP~d~~i~sHWL~iEGVQP~iPeNp~p~~~~~~~~~~~~~~~~~~~ 168 (576)
T KOG2549|consen 89 IIPFRKASGGGRELYYPEDEEVDLDEIINAPLPKVPLDVSIKSHWLAIEGVQPAIPENPPPLEKNVQKKEVIEPAIKAPE 168 (576)
T ss_pred eeeccccCCCCceeecCchhhcchhhhhcCCCCCCCccceeeeeeeeeccccccCCCCCCccccchhhhcccchhhhccC
Confidence 9999998544 8999999999999999999999999999999999999999999999997521 000000
Q ss_pred ----------cc---cccCCceeeccCCccccCcHHHHHHHHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhh
Q 009433 149 ----------SE---YREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYF 215 (535)
Q Consensus 149 ----------~~---~k~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~F 215 (535)
++ ....+.++.+||.++|+||+|||+||++||++|++ +++.+|++||++|+||+|||||||||++|
T Consensus 169 ~~~~~~~~~~~~~~~~~k~~e~~~~Kp~~~h~LS~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~f 247 (576)
T KOG2549|consen 169 GNNPGASTKSSDAVKTLKIGEPVELKPSSKHVLSVELQLYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTF 247 (576)
T ss_pred CCCCCccccccccccccccCCcccccccchhhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHH
Confidence 00 01235678899999999999999999999999998 66778999999999999999999999999
Q ss_pred hhchhhhcc--cCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCcchHHHHHHHHHHHHHH
Q 009433 216 ISEEVVTRS--LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASIC 292 (535)
Q Consensus 216 I~e~vV~~n--l~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~ 292 (535)
|+|+ |+.| ++|+..|+++|+|++||++||+|++|||||+||||||||+|+|++|.++ .||||+|||+||++|+.||
T Consensus 248 Iae~-vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~ 326 (576)
T KOG2549|consen 248 IAEG-VSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQIC 326 (576)
T ss_pred Hhhh-eeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHH
Confidence 9999 9999 8999999999999999999999999999999999999999999999974 7999999999999999999
Q ss_pred HHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHH
Q 009433 293 TRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEA 372 (535)
Q Consensus 293 ~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea 372 (535)
++|++.|.+|++||++||.|+|+|+++++++|||||+||++||.++|+.+|+|+|..|+..|++++..+..+|.+.+.||
T Consensus 327 k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea 406 (576)
T KOG2549|consen 327 KNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEA 406 (576)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh--ccCCCccccccccC-cccccCCCCccCccccccCCCCcccccccCC-CCcccc--C
Q 009433 373 WRVYGALQCAAGLCVYDRLKTV--LLRPPKQSRWESNR-KGMIVFPSKRKASMDNLMLQPPVKKMATLGP-MGVMPV--N 446 (535)
Q Consensus 373 ~~v~~aLl~a~g~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~ 446 (535)
++||++|+.|+..|+++++... ...|-.+...++.| .++.....+|+++-++..-.-|.+.+. +++ +..++. .
T Consensus 407 ~~v~~~llk~~~~ii~~~l~~~~~~~~~~~r~~~~~~g~~l~~e~~~~r~~~l~~~~~~~~~~~l~-~~p~~~~~~~~~~ 485 (576)
T KOG2549|consen 407 NKVYGALLKAENPIIRDKLNSAPDNPVPALRRLRGSLGESLLSEVVKKRQAPLDSSSVTLPVQQLV-APPVMSSAQSLTS 485 (576)
T ss_pred hhHHHHHHHHhhHHHHhhhccccCCCCCcchhhcccccHHHHHHHHhhccCccccccccccccccc-CCccccccccccc
Confidence 9999999999999999999998 33555677777777 888899999987755554444555554 222 111111 1
Q ss_pred cccccCCCCCCCCCcccCCCCCcc--c--hhhhhhhhhhhhcccccchhhHHHHHHHHhhhccCccchhHHHHHHhcccc
Q 009433 447 SMAVNMQGPSGGFSTPVEGPRAGV--S--MLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESM 522 (535)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~s~~l~q~wk~d~~~g~ll~sl~elfge~~ 522 (535)
.+.+.+.-+..|.|..+..|.+.. + .-++.+ ..+.+.|-.++...-+..++.|+++.+++..|....+..+.+.
T Consensus 486 ~~~v~~~~~~~g~p~~~t~p~~~~~~~~~~~~~~~--~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 563 (576)
T KOG2549|consen 486 TQQVSSPTEAPGSPSTSTGPVTSEVPSVVTESTSG--PKVVGPGKSRVVSLPSTGDGKGGATSHSRGVLPPASSPAPLSG 563 (576)
T ss_pred cceecCCCCCCCCCccCCCCcccCCCCcccccccC--CccccCCCceeeecccccccccCCCCCCCCccccccCCCCCCc
Confidence 111222211112222221111111 0 001111 1333444667777788899999999999999999999999999
Q ss_pred ccccCCccccccC
Q 009433 523 FSFTRKSELYFFL 535 (535)
Q Consensus 523 l~f~p~~e~~~fl 535 (535)
.+|.++.+++.|.
T Consensus 564 ~~~~~~~q~~~~~ 576 (576)
T KOG2549|consen 564 SPACGSKQESVDS 576 (576)
T ss_pred cccccccccccCC
Confidence 9999999999774
No 2
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-103 Score=782.83 Aligned_cols=388 Identities=42% Similarity=0.676 Sum_probs=354.0
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCCCCC
Q 009433 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDS 81 (535)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~p 81 (535)
.+|++||||++|||+||+|++||++.+||.|+||||+||+|+|.|||+||||++||++||+.||+.+|+||+|||....|
T Consensus 4 t~ws~et~KdvAeslGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~lNVePLyGyd~~r~ 83 (450)
T COG5095 4 TLWSKETLKDVAESLGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSLNVEPLYGYDPSRP 83 (450)
T ss_pred eeecHHHHHHHHHHcCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhcCCCcccCCCCCcc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceec--CCCCceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcC-C-ccC--ccc------
Q 009433 82 LRFKRA--SGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDA-V-SDG--RRS------ 149 (535)
Q Consensus 82 l~f~~~--~g~~~ly~~eD~evdl~~ii~~~lPk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~-p-~~~--k~~------ 149 (535)
+.|..+ .+++.+||++|+||||+++||+||||+|+.+++++||||||||||+|||||.... | +++ |.+
T Consensus 84 l~fs~v~~g~gqsvYYlddEEvDfe~~in~PLPkVPr~~s~~sHWLAiEGVQPaIpqNP~l~d~~V~~~~~k~T~g~~~~ 163 (450)
T COG5095 84 LQFSLVFRGLGQSVYYLDDEEVDFEEYINRPLPKVPRRVSIQSHWLAIEGVQPAIPQNPILLDKPVAKWASKDTLGVMPG 163 (450)
T ss_pred hhHHHHHccCCcceEecChhhcCHHHHhcCcCccCCcCcchhhhhhhhcccCccCCCCCCccccccccccccCccccCcC
Confidence 999876 4568999999999999999999999999999999999999999999999996422 1 000 000
Q ss_pred -----cc----ccCCceeeccCCccccCcHHHHHHHHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchh
Q 009433 150 -----EY----REDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEV 220 (535)
Q Consensus 150 -----~~----k~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~v 220 (535)
.| -..+.++++||+++|+||||+|+||++|+.+++++++.+.|++||+||++|+|||||+|||++||+|+
T Consensus 164 a~t~a~q~~n~v~~~~n~E~KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~eq- 242 (450)
T COG5095 164 ASTAAYQARNGVTSMENAELKPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFNEQ- 242 (450)
T ss_pred cchHHHHHhcCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH-
Confidence 01 12345688999999999999999999999999988888889999999999999999999999999999
Q ss_pred hhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCC-cchHHHHHHHHHHHHHHHHhCCCc
Q 009433 221 VTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD-NHWDLRNFVADLIASICTRFGHVY 299 (535)
Q Consensus 221 V~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~-~hw~LRd~AA~lL~~I~~~~~~~y 299 (535)
|++|++|+..|..+|.|+.||++|++||++||+||||||+|||+++|++|+.+.+ +|++|||+||.+|..+|++|+++|
T Consensus 243 it~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Y 322 (450)
T COG5095 243 ITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSY 322 (450)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 9999999999999999999999999999999999999999999999999997644 799999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHH
Q 009433 300 QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGAL 379 (535)
Q Consensus 300 ~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aL 379 (535)
.+|+|||+||++|+|+|.+++.+|||||+.||+-||.++||.+|.||+..|...+...+. + .|+..-.|+.+|.++|
T Consensus 323 ktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle--~-~~e~~~~e~n~~vd~l 399 (450)
T COG5095 323 KTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE--K-GNEEEIYENNRVVDLL 399 (450)
T ss_pred hhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh--c-cchhhcccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888775543 2 4666778999999999
Q ss_pred HHHhhhhhhhhhhh
Q 009433 380 QCAAGLCVYDRLKT 393 (535)
Q Consensus 380 l~a~g~~~~~~~~~ 393 (535)
..|+=..-.|-|..
T Consensus 400 ~dalliL~~d~Lpn 413 (450)
T COG5095 400 KDALLILQSDGLPN 413 (450)
T ss_pred HHHHHHHhccCCCC
Confidence 99886665554543
No 3
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=100.00 E-value=2.6e-96 Score=764.92 Aligned_cols=333 Identities=55% Similarity=0.932 Sum_probs=310.8
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCCCCCccc
Q 009433 5 PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRF 84 (535)
Q Consensus 5 ~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~pl~f 84 (535)
|+|+|+.|||++|+++++||+++.||+|+|||+++|+|+|+|||||+||++||++||+.||+++|+||+|||.++++++|
T Consensus 1 ~~~~i~~ia~~~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~eplyG~~~~~~~~~ 80 (343)
T cd08050 1 PQESIKLIAESLGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVEPLYGFSSSEPLPF 80 (343)
T ss_pred ChhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCCcccCCCCCccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec-CCCCceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcCCccCcc-------cccccCCc
Q 009433 85 KRA-SGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDAVSDGRR-------SEYREDGI 156 (535)
Q Consensus 85 ~~~-~g~~~ly~~eD~evdl~~ii~~~lPk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~p~~~k~-------~~~k~~~~ 156 (535)
+.. .|++++||++|+||||++++++++|++|+++++++||||||||||.|||||++......+. ........
T Consensus 81 ~~~~~~~~~l~~~~D~eidl~~~i~~~lp~~p~~~~~~~hWLaieGvqP~ip~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
T cd08050 81 RVSTGGGQELYYVEDKEIDLKDLINTPLPKVPLDVSVKAHWLAIEGVQPLIPENPPPSAIEVQKKESLANAAVKRLKKDE 160 (343)
T ss_pred eeccCCCceEeeCCCCcccHHHhhhcccCCCCCccccccccceecCccCCCCCCCCchhccccccccccccccccccccC
Confidence 554 5668999999999999999999999999999999999999999999999997643221110 00112345
Q ss_pred eeeccCCccccCcHHHHHHHHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccC-ChHHHHHHH
Q 009433 157 SVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLK-NFSLLFALM 235 (535)
Q Consensus 157 ~v~iK~~vkh~LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~-nl~~L~~Lm 235 (535)
++.+||.++|+||+|||+||++||++|++ +++..|++||++|++|||||||||||++||+++ |++|++ |+..|.++|
T Consensus 161 ~~~~k~~~~~~LS~Elq~yf~~It~a~~~-~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~-v~~n~~~nl~~L~~lm 238 (343)
T cd08050 161 QVLLKPLVRHVLSKELQLYFEEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFIAEG-VTVNLDQNLALLIYLM 238 (343)
T ss_pred cceeeeccccccCHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhccCCCchhhhhHHHHHHHHH-HHhhhcccHHHHHHHH
Confidence 67899999999999999999999999997 456689999999999999999999999999999 999998 999999999
Q ss_pred HHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Q 009433 236 RVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAF 314 (535)
Q Consensus 236 rmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~l 314 (535)
+|++||++||+|+||+|+|+|||++|||+|++++|+++ .++||+|||+||++|+.||++|+++|++|++||+++|.|+|
T Consensus 239 ~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l 318 (343)
T cd08050 239 RMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKAL 318 (343)
T ss_pred HHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999976 89999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhHHHHHHhhChhhh
Q 009433 315 LDPTKSLSQHYGAIQGLAALGPSVV 339 (535)
Q Consensus 315 ldp~k~l~t~YGAI~GL~aLG~~aV 339 (535)
+||++++++|||||+||++||+++|
T Consensus 319 ~d~~~~~~~~YGAi~GL~~lG~~~v 343 (343)
T cd08050 319 LDPKKPLTTHYGAIVGLSALGPEAV 343 (343)
T ss_pred cCCCCCcchhhHHHHHHHHhCccCC
Confidence 9999999999999999999999886
No 4
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=99.96 E-value=1.3e-30 Score=224.54 Aligned_cols=91 Identities=62% Similarity=1.077 Sum_probs=88.0
Q ss_pred HHHHHhccccCCCCC-CcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhh
Q 009433 260 VITCLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV 338 (535)
Q Consensus 260 vLTCll~k~l~~~~~-~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~a 338 (535)
||||+|+|++|.++. +|||+|||+||++|+.||++|+++|++|++||+++|+|+|+||++|+++|||||+||.+||+++
T Consensus 1 vltClv~k~l~~~~~~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 1 VLTCLVGKQLGSRPPVDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CeEEEeeccccCCCCCcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999998775 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcccchHHH
Q 009433 339 VHLLILPNLELY 350 (535)
Q Consensus 339 Vr~lllP~L~~y 350 (535)
||.+|+||++.|
T Consensus 81 vr~~ilP~l~~~ 92 (92)
T PF07571_consen 81 VRALILPNLKAY 92 (92)
T ss_pred HHHhhccCcCCC
Confidence 999999999876
No 5
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=99.92 E-value=2.2e-25 Score=180.51 Aligned_cols=66 Identities=56% Similarity=0.838 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
||+||+|+||+||||+||++|+||+++.||+|||||||+|+|+|.|||+||||++||++|||+|||
T Consensus 1 ~s~~~~esvk~iAes~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 1 MSVFSQESVKDIAESLGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp -----HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred CCcCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999999999999999996
No 6
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=99.81 E-value=6.4e-20 Score=148.60 Aligned_cols=65 Identities=58% Similarity=0.841 Sum_probs=63.3
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+.+|+++|+++|++.|++++|+|++..|++++|||+++|+|+|+|||+||||++||++||+.||+
T Consensus 1 ~~~p~~~i~ria~~~Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 1 SWLPKETIKDVAESLGIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCCHHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999999999999999999986
No 7
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=99.48 E-value=1.4e-13 Score=117.10 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=71.7
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCC
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGF 76 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy 76 (535)
.+|+.+|+++|+..|+.++|+++..++.+.++.++.+|+++|++|+.|++|+|+|++||..||+..| .|+|||
T Consensus 13 gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g-~~~ygf 85 (85)
T cd00076 13 GITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGY 85 (85)
T ss_pred cCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCC-CCccCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999 899998
No 8
>PLN00035 histone H4; Provisional
Probab=99.48 E-value=1.6e-13 Score=120.23 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCC
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~ 77 (535)
.+|..+|+++|+..|+.++|+++..+|.+.+|.++.+|+++|++|++|++|+|+|++||..||+..+- |+|||.
T Consensus 29 ~ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~-~lyGf~ 102 (103)
T PLN00035 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR-TLYGFG 102 (103)
T ss_pred cCCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC-cCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 999996
No 9
>PTZ00015 histone H4; Provisional
Probab=99.43 E-value=4.7e-13 Score=117.26 Aligned_cols=73 Identities=25% Similarity=0.325 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCC
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGF 76 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy 76 (535)
-+|+.+|+++|+..|+.++|+++..++.+.+|.++.+|+++|++|++|++|+|+|++||..||+..+- |+|||
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~-~~ygf 102 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR-TLYGF 102 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC-CCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 99998
No 10
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=98.94 E-value=1.5e-09 Score=93.51 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
-.+|..+|++|+++.|..++|.+|...|++.+|..+.+|..+|..++.|+||+|++++||..|++.++..
T Consensus 18 ~~Lp~apv~Ri~r~~~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 18 LLLPKAPVRRILRKAGAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred hhcCchHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999998763
No 11
>smart00417 H4 Histone H4.
Probab=98.89 E-value=3.7e-09 Score=87.95 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHH
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSA 64 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~A 64 (535)
-+|+.+|+++|...|+.++|+++...+.+-+|.++.+|+.+|++|+.|++|+|+|++||..|
T Consensus 13 gI~k~~IrRLaRr~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 13 GITKPAIRRLARRGGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred CCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 38999999999999999999999999999999999999999999999999999999999754
No 12
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=98.69 E-value=7.8e-08 Score=86.79 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=65.8
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCCC
Q 009433 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASG 79 (535)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~ 79 (535)
.+.|.+|.++.|+++++++|...|.+.++....+|+++|..|++|++|++++.+||..|++.+.- |.|.++
T Consensus 4 ~~~v~~iLk~~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~---~~f~~~ 74 (117)
T cd07979 4 ARVIAAILKSMGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD---YSFTSP 74 (117)
T ss_pred HHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---cCCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999866 666654
No 13
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=98.41 E-value=1.2e-06 Score=73.19 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=62.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
+-+|..|.+..|++..++++.+.|++-++.++.++.+.+.++|.|++|++.+..||..||+..++
T Consensus 9 ~~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 9 RIAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 34788999999999999999999999999999999999999999999999999999999999887
No 14
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.25 E-value=2.1e-06 Score=70.60 Aligned_cols=64 Identities=33% Similarity=0.493 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 4 VPKETIEVIAQSIGVY-----NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 4 ~~~e~V~~iAes~Gi~-----~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
+|+.+|.+++..++-. +++.++...|..-+||.+.+|+.+|..+|+|+||++|++.||+.|++.
T Consensus 6 ~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 6 IPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp SSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred cCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 6788888888888874 899999999999999999999999999999999999999999999875
No 15
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=98.15 E-value=9.1e-06 Score=65.48 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
.+|...|++|.+.. +..+++.|+...++...|..+..+..+|...+.+.+|++++.+||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 38999999999999 7788999999999999999999999999999999999999999999986
No 16
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.08 E-value=2.2e-05 Score=64.98 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
++++.+.....++ +-.+++++|...|.+-+|..+.+++.+|.++++|.||+|++.+||..||+.
T Consensus 2 ~~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 2 LTKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred CcHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4566666666666 446899999999999999999999999999999999999999999999986
No 17
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=97.92 E-value=4.2e-05 Score=65.10 Aligned_cols=73 Identities=26% Similarity=0.367 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCC
Q 009433 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (535)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~ 77 (535)
+.+-+|+++|...|..+++--+-++.-.-....|+.++..|..+..|+||+++|+.||-++|+-.+. .+|||.
T Consensus 30 itKpaIRRlARr~GVkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~-~~~g~~ 102 (103)
T KOG3467|consen 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR-TLYGFG 102 (103)
T ss_pred cchHHHHHHHHhcCcchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCc-eeeccC
Confidence 4578999999999999999999999999999999999999999999999999999999999999887 578885
No 18
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=97.79 E-value=0.00013 Score=60.68 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=61.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
.-.|..++++.|++..++.+...|++-+..+++++.+.+.+++.|++|+..+..||..||+..|+
T Consensus 9 ~~~va~il~~~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 9 RRSVAQILKHAGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 34688899999999999999999999999999999999999999999999999999999999887
No 19
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=97.67 E-value=0.00013 Score=65.94 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||...|.++... .+..+++++++..|+.-+||...||++.|.+.+++.||+++|++||+.|++.
T Consensus 20 ~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n 85 (115)
T cd00074 20 QFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN 85 (115)
T ss_pred cCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence 5899999999997 8889999999999999999999999999999999999999999999999975
No 20
>smart00428 H3 Histone H3.
Probab=97.64 E-value=0.00018 Score=63.92 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=56.1
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 8 TIEVIAQSIGV---YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 8 ~V~~iAes~Gi---~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
-|+.|++...- -+++++|..+|.+.+|..+-++.++|..++.|+||.||++.||..|.+.++.
T Consensus 38 LVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir~~ 103 (105)
T smart00428 38 LVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIRGE 103 (105)
T ss_pred HHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHhcc
Confidence 46777777631 2799999999999999999999999999999999999999999999988764
No 21
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=97.23 E-value=0.0011 Score=61.07 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
..|..|.++.||+...+.+...|-+.+--+..+|+++|.-++.|++|+.++.+||..|+..+
T Consensus 16 ~~i~~iL~~~Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r 77 (129)
T PF02291_consen 16 RVIHLILKSMGVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSR 77 (129)
T ss_dssp HHHHHHHHHTT---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 47889999999999999999999999977899999999999999999999999999999986
No 22
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=97.11 E-value=0.0022 Score=53.92 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVY---NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~---~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+|..|+|..+.. ++++++..+|++-+=..+..+..+---|++|+||++++++||....|
T Consensus 10 ~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 10 TVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 567788887544 39999999999999999999999999999999999999999988765
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.81 E-value=0.0038 Score=54.67 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009433 231 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 310 (535)
Q Consensus 231 L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL 310 (535)
|..+-.++.||-.. ++.|+..|+|+||.|+ .|++|++|.+|...|..|++-+....-.--..|...|
T Consensus 7 li~Laa~ai~l~~~----~~~~l~~Il~pVL~~~---------~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 7 LIGLAAVAIALGKD----ISKYLDEILPPVLKCF---------DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred HHHHHHHHHHchHh----HHHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666665 9999999999999995 6889999999999999999987764444456788888
Q ss_pred HHHhcCCCCC
Q 009433 311 LHAFLDPTKS 320 (535)
Q Consensus 311 ~k~lldp~k~ 320 (535)
.|.+.|++.+
T Consensus 74 ~kl~~D~d~~ 83 (97)
T PF12755_consen 74 CKLSADPDEN 83 (97)
T ss_pred HHHHcCCchh
Confidence 9999988766
No 24
>PLN00160 histone H3; Provisional
Probab=96.43 E-value=0.01 Score=52.20 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=55.2
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 8 TIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 8 ~V~~iAes~G--i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
-|+.|++... --+...+|..+|-+-.|..+-.+.++|..++.|+||-+|++.|+..|.+.++.
T Consensus 30 LVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 94 (97)
T PLN00160 30 LVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRIRGQ 94 (97)
T ss_pred HHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHhhcc
Confidence 4677777653 13688899999999999999999999999999999999999999999988754
No 25
>PTZ00018 histone H3; Provisional
Probab=96.36 E-value=0.0098 Score=55.24 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=55.7
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 8 TIEVIAQSI--GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 8 ~V~~iAes~--Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
-|+.|++.. ++ +...++..+|-+-.|.+|-.+.+++..++.|+||-+|+..|+..|.+.++.+
T Consensus 71 LVREI~~~~~~~~-rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PTZ00018 71 LVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred HHHHHHHHcCCcc-eeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence 466777664 34 6889999999999999999999999999999999999999999999888754
No 26
>PLN00121 histone H3; Provisional
Probab=96.36 E-value=0.01 Score=55.15 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=55.3
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 8 TIEVIAQSI--GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 8 ~V~~iAes~--Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
-|+.|++.. ++ +...++..+|-+-.|.+|-.+.++|..++.|+||-+|++.||..|.+.++.
T Consensus 71 LVREI~~~~~~~~-Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 134 (136)
T PLN00121 71 LVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_pred HHHHHHHHhCccc-eeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhccc
Confidence 466777775 33 688999999999999999999999999999999999999999999988765
No 27
>PLN00161 histone H3; Provisional
Probab=96.32 E-value=0.016 Score=53.60 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=58.1
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCC
Q 009433 8 TIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (535)
Q Consensus 8 ~V~~iAes~G--i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPL 73 (535)
-|+.|++... --+...++..+|-+-.|.+|-++.++|.-++.|+||-+|++.||..|.+.++..+-
T Consensus 64 LVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~~~ 131 (135)
T PLN00161 64 LVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPIYG 131 (135)
T ss_pred HHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccccc
Confidence 4777887763 13788999999999999999999999999999999999999999999999987643
No 28
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.28 E-value=0.017 Score=53.76 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
-|..|..++||..-.+-+...|-+..=-+...|+++|.=|.+|+++.++.++||..|+.++..
T Consensus 18 ~i~~iL~s~GI~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~ 80 (148)
T KOG3334|consen 18 VIASILKSLGIQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVD 80 (148)
T ss_pred HHHHHHHHcCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhc
Confidence 477899999999999999998887776679999999999999999999999999999999865
No 29
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=95.90 E-value=0.032 Score=52.70 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
.+|.+.|-+|.+..== ..+++||.+.+-+.|.+.|.-|.-||..-..+-||||++.+||=-|+..++.|
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLGFe 102 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLGFE 102 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcCcH
Confidence 4799999999987622 24999999999999999999999999999999999999999999999988775
No 30
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=95.66 E-value=0.062 Score=46.19 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CccCHhhHHHHhhcc
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR---TVLTANDVDSALNLR 68 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR---~~Lt~~DI~~AL~~~ 68 (535)
-+++..||.+..++-=..++++++..++--....+-||+++|.+.|.+... .-|.++||..|.+.+
T Consensus 16 ~f~k~~iKr~~~~~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rrl 84 (85)
T cd08048 16 SFPKAAIKRLIQSVTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRRL 84 (85)
T ss_pred hccHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHh
Confidence 488999999988876689999999999999999999999999999999776 789999999998864
No 31
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=94.89 E-value=0.061 Score=58.55 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHc------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhh
Q 009433 4 VPKETIEVIAQSI------GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60 (535)
Q Consensus 4 ~~~e~V~~iAes~------Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~D 60 (535)
+|...||.+|... +-.+|+.++.++|-+..+.+..++..+---|+.|++|||+..+|
T Consensus 352 lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 352 LPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred CCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 7889999999888 55689999999999999999999999999999999999999887
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.49 E-value=0.26 Score=48.06 Aligned_cols=180 Identities=17% Similarity=0.149 Sum_probs=98.5
Q ss_pred chHHHHHHHHhhhccCCcc---cccchhhhhhh---chhhhcccCCh--HHHHHHHHHHHHhhcCCCcccccchhhhHHH
Q 009433 188 NSTVFKQALLSLAMDSGLH---PLVPYFTYFIS---EEVVTRSLKNF--SLLFALMRVARSLLRNPHIHIEPYLHQMMPS 259 (535)
Q Consensus 188 ~~~~r~~AL~sL~tD~gL~---qLLPYfv~FI~---e~vV~~nl~nl--~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPs 259 (535)
+=..|.+||..|+.--.-+ ...+-|+..+. .. +...+.|+ .+....+.++..|..+-.-.+++|+..++|+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~-i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDA-IIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HH-HHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 3345666776555432211 23333333333 33 44444433 2233345555666655555699999999999
Q ss_pred HHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHH-HHHHHHHhcCCCCCchhhhhHHHHHHhh----
Q 009433 260 VITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-TRTLLHAFLDPTKSLSQHYGAIQGLAAL---- 334 (535)
Q Consensus 260 vLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI-~~tL~k~lldp~k~l~t~YGAI~GL~aL---- 334 (535)
++.++-.+ .=-+|+.|...|..||..++ ..+++ ...+...+. +++.....+++..|..+
T Consensus 99 Ll~~~~~~---------~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 99 LLKKLGDS---------KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLK--SKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHGGG------------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHccc---------cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHc
Confidence 98886332 12689999999999999766 12456 445555543 67777777777665543
Q ss_pred C--hhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 009433 335 G--PSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYD 389 (535)
Q Consensus 335 G--~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~ 389 (535)
| ...+... ..++.+.+.|...+.+ .+..+|..|.+++..+....|..-..
T Consensus 163 ~~~~~~l~~~--~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 163 GSDSSVLQKS--AFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp ----GGG--H--HHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred cchHhhhccc--chHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 3 1111110 1134555555555543 46778999999999998888776433
No 33
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.31 E-value=0.1 Score=47.65 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCH---hhHHHHhhcc
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTA---NDVDSALNLR 68 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~---~DI~~AL~~~ 68 (535)
-|-.|..|+||...++.+-..|-+..--+-.+++++|.-|+.|++|...++ +||..|+..+
T Consensus 19 lihliL~Slgi~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 19 LIHLILRSLGIEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred HHHHHHHhcCchhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 466889999999999999999988888889999999999999999986555 9999999764
No 34
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.24 E-value=0.12 Score=52.58 Aligned_cols=71 Identities=25% Similarity=0.279 Sum_probs=60.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc-cCCCCCCCCCCCCCccceec
Q 009433 16 IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL-RNVEPIYGFASGDSLRFKRA 87 (535)
Q Consensus 16 ~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~-~nvEPLyGy~s~~pl~f~~~ 87 (535)
-|-+.|++||...|.+-.+.++..|+.-|.++++|-|..+|-+-||..+|+- .|++. -||++.+.-.|+++
T Consensus 168 d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~i-Pgf~sd~~~~~~k~ 239 (258)
T KOG1142|consen 168 DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEI-PGFSSDEKRSKKKA 239 (258)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccC-CCcccccccccccc
Confidence 5666799999999999999999999999999999999999999999999987 68863 47877554445543
No 35
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=94.21 E-value=0.24 Score=40.81 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 7 ETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 7 e~V~~iAes~Gi-~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
..+..+.++++- ..+++++...|.+-++..+..++..|.++++|-+-.+|...||...|+-
T Consensus 3 ~~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 3 RKLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 445555555543 3589999999999999999999999999999999999999999999874
No 36
>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]
Probab=93.46 E-value=0.22 Score=51.81 Aligned_cols=69 Identities=22% Similarity=0.291 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC--CCCCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE--PIYGF 76 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE--PLyGy 76 (535)
-|..+..+.|+..+++.+.+.|.+-+.-.|++|.+++..+..|++|+..|..||...|..+|+. -||-|
T Consensus 10 VV~~Ll~~~gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~v~sL~~~ 80 (323)
T KOG4336|consen 10 VVSNLLKTKGFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIKVSSLYAY 80 (323)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCChhhhHHH
Confidence 3566788999999999999999999999999999999999999999999999999999998873 45544
No 37
>smart00414 H2A Histone 2A.
Probab=93.38 E-value=0.25 Score=44.22 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~G-i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||-.-|.++.+.-. ..+++..++-.||.-+||-..||++-|...++..|++++|++||+.|++-
T Consensus 9 ~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~n 74 (106)
T smart00414 9 QFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRN 74 (106)
T ss_pred cCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccC
Confidence 356666777776542 55899999999999999999999999999999999999999999999864
No 38
>KOG2389 consensus Predicted bromodomain transcription factor [Transcription]
Probab=93.16 E-value=0.23 Score=52.46 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 5 PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 5 ~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
-...|..|++++|...+.+-+...|...+..+|.++...|..|+.+++|.--..-||-.||..+...
T Consensus 31 a~~avaQIcqslg~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~Al~dls~s 97 (353)
T KOG2389|consen 31 ARVAVAQICQSLGYSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVLALQDLSAS 97 (353)
T ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHHHHHHhhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999998764
No 39
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=92.95 E-value=0.21 Score=45.24 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 2 SIVPKETIEVIAQ-SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 2 s~~~~e~V~~iAe-s~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+.+|.--|+++.+ .-+-.+++.+++-.++..+||-+.||++-|...++--|.+++++.+++.|++
T Consensus 25 l~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr 90 (132)
T COG5262 25 LIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR 90 (132)
T ss_pred ccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc
Confidence 3578888999988 5666789999999999999999999999999999999999999999999985
No 40
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=92.85 E-value=0.4 Score=45.86 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCC
Q 009433 3 IVPKETIEVIAQSIGVY---NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~---~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPL 73 (535)
.+|.+.|.++++.+==+ .++.||..++++-..-++.-+.--|..|++..+|++++++||=.||+-++.+-+
T Consensus 10 ~lP~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eiefs~f 83 (172)
T KOG0870|consen 10 NLPNAIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEFSSF 83 (172)
T ss_pred hccHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhchHHH
Confidence 47999999888765322 488999999999999999999999999999999999999999999998766433
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=1.1 Score=51.27 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=79.2
Q ss_pred HHHHHHhhcCCCc--ccccchhhhHHHHHHHHhcccc-----CCC--------------------------C------CC
Q 009433 235 MRVARSLLRNPHI--HIEPYLHQMMPSVITCLVSKRL-----GNR--------------------------F------SD 275 (535)
Q Consensus 235 mrmv~ALl~Np~L--~IepYLHqLlPsvLTCll~k~l-----~~~--------------------------~------~~ 275 (535)
-.+-.|+..+|-. -+.|||.+|+|.++.-++.... ++. . .+
T Consensus 277 CEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdd 356 (885)
T KOG2023|consen 277 CEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDD 356 (885)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccc
Confidence 4566799999933 6799999999999987665321 100 0 01
Q ss_pred ----------cchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhccc
Q 009433 276 ----------NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILP 345 (535)
Q Consensus 276 ----------~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP 345 (535)
..|.||..+|..|.-+.+-||+ .+-+.++-.|++.|.. .....+-.+|.+|.|+-. -.-..++|
T Consensus 357 dDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAE-GcM~g~~p 430 (885)
T KOG2023|consen 357 DDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAE-GCMQGFVP 430 (885)
T ss_pred ccccccccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHH-HHhhhccc
Confidence 2499999999999999999985 6777777777777764 444455555555555522 22334677
Q ss_pred chHHHHHhhhhhh
Q 009433 346 NLELYLKFLEPEM 358 (535)
Q Consensus 346 ~L~~y~~~Le~~l 358 (535)
+|+.+...|-+-|
T Consensus 431 ~LpeLip~l~~~L 443 (885)
T KOG2023|consen 431 HLPELIPFLLSLL 443 (885)
T ss_pred chHHHHHHHHHHh
Confidence 7776665554433
No 42
>PLN00154 histone H2A; Provisional
Probab=92.58 E-value=0.4 Score=44.62 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~G--i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||-.-|.+..+.-. ..+++..+.-.||.-+||-.-||++-|...++..|++++|+.||..|++-
T Consensus 38 ~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrn 104 (136)
T PLN00154 38 QFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
T ss_pred cCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccC
Confidence 367777888888864 56999999999999999999999999999999999999999999999864
No 43
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=92.12 E-value=0.61 Score=40.61 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=48.4
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccCHhhHHHHhhc
Q 009433 2 SIVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT-VLTANDVDSALNL 67 (535)
Q Consensus 2 s~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~-~Lt~~DI~~AL~~ 67 (535)
|-+++..||.+..++== ..+++.++..++.-....+-|||++|...+..-... -|++.|+..|.+-
T Consensus 22 s~~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 22 SSFNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp ----HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 35789999998877543 589999999999999999999999999999865544 7999999999764
No 44
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=92.09 E-value=0.36 Score=44.33 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 3 IVPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 3 ~~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
.+|.--|.++.+. -.+.+++-++.-.||.-+||-.-||++-|-++++-.+++++++.+|+.|++
T Consensus 27 ~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 27 QFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred ccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 4666667777766 566788999999999999999999999999999999999999999999985
No 45
>smart00427 H2B Histone H2B.
Probab=91.79 E-value=0.46 Score=41.27 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 21 lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
++..+...+..-+......|..||.++++..||++||..+|..|.++.
T Consensus 20 iS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 20 ISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 568888888999999999999999999999999999999999999874
No 46
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.78 E-value=0.34 Score=33.31 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=24.6
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH
Q 009433 256 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR 294 (535)
Q Consensus 256 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~ 294 (535)
|+|.++.++ .|.+|.+|+.|+..|+.|++.
T Consensus 1 llp~l~~~l---------~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL---------NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH---------T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc---------CCCCHHHHHHHHHHHHHHHhh
Confidence 578887775 478999999999999999874
No 47
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=3.7 Score=49.48 Aligned_cols=254 Identities=15% Similarity=0.109 Sum_probs=150.7
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHH--HHHHHHhhcCCCccccc
Q 009433 174 LYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFAL--MRVARSLLRNPHIHIEP 251 (535)
Q Consensus 174 ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~L--mrmv~ALl~Np~L~Iep 251 (535)
..|+.+...++..+++ .|++|=+.|++..+=++++|-|.+..+.. =... ...+..+ -|.+.- .=+.|. ..
T Consensus 4 ~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~-~~p~---~Rq~aaVl~Rkl~~~--~w~~l~-~e 75 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILATS-ADPQ---VRQLAAVLLRKLLTK--HWSRLS-AE 75 (1075)
T ss_pred hHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhcC-CChH---HHHHHHHHHHHHHHH--HhhcCC-HH
Confidence 4566666667765555 58999999999988888999998887654 2211 2221111 011111 011111 22
Q ss_pred chhhhHHHHHHHHhccc-------cC-------CCCC----------------CcchHHHHHHHHHHHHHHHHhCCCchh
Q 009433 252 YLHQMMPSVITCLVSKR-------LG-------NRFS----------------DNHWDLRNFVADLIASICTRFGHVYQN 301 (535)
Q Consensus 252 YLHqLlPsvLTCll~k~-------l~-------~~~~----------------~~hw~LRd~AA~lL~~I~~~~~~~y~~ 301 (535)
--.+|-.++|.|++.-. +| .+.. ..+-.+|+-|=.+|..+-..||+....
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 23467777777776521 11 0111 134489999999999999999998776
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-----hhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHH
Q 009433 302 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-----SVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVY 376 (535)
Q Consensus 302 L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~-----~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~ 376 (535)
.-.-+.+.|.+.+.||..+ .+.-|+.++.++-. .+.+...-+-|+..+..+...+.. .+...-.++..+.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~---~d~~~a~~~l~~l 230 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD---GDDDAAKSALEAL 230 (1075)
T ss_pred hHHHHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc---cchHHHHHHHHHH
Confidence 6668999999999999998 66667777666533 233333334444444444444432 1222234677888
Q ss_pred HHHHHHhhhhhhhhhhhhcc-------CCCccccccccC-----cccccCCCCccCccccccC--CCCcccccccCCCC
Q 009433 377 GALQCAAGLCVYDRLKTVLL-------RPPKQSRWESNR-----KGMIVFPSKRKASMDNLML--QPPVKKMATLGPMG 441 (535)
Q Consensus 377 ~aLl~a~g~~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 441 (535)
.-|+...+.++...+...+. +--..-.||..+ ..+-.-|.++|.+.+ +-+ .|.+=++.|++..+
T Consensus 231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D 308 (1075)
T KOG2171|consen 231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDD 308 (1075)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHHhcCCcccc
Confidence 88888888998888776632 222333333221 111124555555544 322 45666777777665
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.90 E-value=0.15 Score=38.94 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 278 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 278 w~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
|.+|.-|+..|+.++...+.......+.++..|...|.|++. ...-.|..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 899999999999988766666667888999999999988666 6688888887654
No 49
>PTZ00017 histone H2A; Provisional
Probab=90.82 E-value=0.57 Score=43.59 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
||-.-|.++...- -..+++..+.-.||.-+||-..||++-|...++..|++++|+.||+.|++-
T Consensus 28 FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~n 92 (134)
T PTZ00017 28 FPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRN 92 (134)
T ss_pred cchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccC
Confidence 5666666666542 345899999999999999999999999999999999999999999999854
No 50
>PTZ00463 histone H2B; Provisional
Probab=90.37 E-value=0.87 Score=41.36 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 21 lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
+|..+...+...|......|..||.++++..+|.+||..||..|.++.
T Consensus 47 IS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 47 ISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 478888889999999999999999999999999999999999999874
No 51
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=1.4 Score=50.41 Aligned_cols=194 Identities=22% Similarity=0.269 Sum_probs=128.3
Q ss_pred HHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC
Q 009433 194 QALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF 273 (535)
Q Consensus 194 ~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~ 273 (535)
+||.-|++==| ++++|-+.-++-+. ..+ .++..-..-+-.+-|+..-=.=.+-|||..|+|-++.|+=.|.---+
T Consensus 377 AaLDVLanvf~-~elL~~l~PlLk~~-L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR- 451 (885)
T KOG2023|consen 377 AALDVLANVFG-DELLPILLPLLKEH-LSS--EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR- 451 (885)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHH-cCc--chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee-
Confidence 45555544322 45677777777666 333 23433333333334444433336778999999999999977643222
Q ss_pred CCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHh
Q 009433 274 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKF 353 (535)
Q Consensus 274 ~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~ 353 (535)
.-..|.|-+||--++..= .+.-++| ++.-|++.++|.+| -.+-.|..+++-|-.+|-.. ++|++..++..
T Consensus 452 sITCWTLsRys~wv~~~~------~~~~f~p-vL~~ll~~llD~NK--~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~ 521 (885)
T KOG2023|consen 452 SITCWTLSRYSKWVVQDS------RDEYFKP-VLEGLLRRLLDSNK--KVQEAACSAFATLEEEAGEE-LVPYLEYILDQ 521 (885)
T ss_pred eeeeeeHhhhhhhHhcCC------hHhhhHH-HHHHHHHHHhcccH--HHHHHHHHHHHHHHHhccch-hHHHHHHHHHH
Confidence 356899999887765432 2233444 44445556676554 45567888888888888776 78999999999
Q ss_pred hhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCcccccc
Q 009433 354 LEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWE 405 (535)
Q Consensus 354 Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~~~~~~~~~~~~~~~~~ 405 (535)
|.........+|-.+-+|| .|+|-..||--+.+..-.-+..||.-..|.
T Consensus 522 l~~af~kYQ~KNLlILYDA---IgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~ 570 (885)
T KOG2023|consen 522 LVFAFGKYQKKNLLILYDA---IGTLADSVGHALNKPAYIQILMPPLIEKWE 570 (885)
T ss_pred HHHHHHHHhhcceehHHHH---HHHHHHHHHHhcCcHHHHHHhccHHHHHHH
Confidence 9988887777777676676 467777788888877766678899888886
No 52
>PLN00158 histone H2B; Provisional
Probab=89.64 E-value=1 Score=40.97 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 21 lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
++..+...+...|......|..||.++++..+|.+||..||..|.++.
T Consensus 46 IS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 46 ISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 478888888899999999999999999999999999999999999874
No 53
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.23 E-value=4.9 Score=45.45 Aligned_cols=148 Identities=18% Similarity=0.284 Sum_probs=100.7
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhh
Q 009433 176 FDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQ 255 (535)
Q Consensus 176 f~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHq 255 (535)
.++++..++..++....++.++.|.+| |+.. -..|.+. ..|+-+.-++.||-.+. .+|+.+
T Consensus 24 lEk~Vk~l~~~~~~~~i~k~I~~L~~d------------~a~s--~~~n~rk-GgLiGlAA~~iaLg~~~----~~Y~~~ 84 (675)
T KOG0212|consen 24 LEKLVKDLVNNNDYDQIRKVISELAGD------------YAYS--PHANMRK-GGLIGLAAVAIALGIKD----AGYLEK 84 (675)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHH------------hccC--ccccccc-chHHHHHHHHHHhcccc----HHHHHH
Confidence 456666676666666666777767666 2221 2233333 44555556666665443 349999
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 256 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 256 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
++|++++|. .|..-.+|.||..-|-.|++-+......--.-|...+.|...|.+.+ +.|-++|.
T Consensus 85 iv~Pv~~cf---------~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~-------V~~~aeLL 148 (675)
T KOG0212|consen 85 IVPPVLNCF---------SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQN-------VRGGAELL 148 (675)
T ss_pred hhHHHHHhc---------cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccc-------cccHHHHH
Confidence 999999995 34455899999999999999888877778889999999999988754 44556666
Q ss_pred hhhhHhhccc-----chHHHHHhhhhhh
Q 009433 336 PSVVHLLILP-----NLELYLKFLEPEM 358 (535)
Q Consensus 336 ~~aVr~lllP-----~L~~y~~~Le~~l 358 (535)
..-+...+.+ +|+.+...|..++
T Consensus 149 dRLikdIVte~~~tFsL~~~ipLL~eri 176 (675)
T KOG0212|consen 149 DRLIKDIVTESASTFSLPEFIPLLRERI 176 (675)
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHH
Confidence 6666666655 3455555554444
No 54
>PLN00157 histone H2A; Provisional
Probab=89.22 E-value=0.79 Score=42.56 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 4 VPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 4 ~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
||---|.+.... --..+++..+.-.||.-+||-..||++-|..-++..|++++++.||..|++-
T Consensus 27 FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 91 (132)
T PLN00157 27 FPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRN 91 (132)
T ss_pred cchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccC
Confidence 444455555544 1234788899999999999999999999999999999999999999999854
No 55
>PLN00156 histone H2AX; Provisional
Probab=89.17 E-value=0.62 Score=43.57 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
||---|.+....- -..+++..+.-.||.-+||-..||++-|..-++..|++++++.||..|++-
T Consensus 30 FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrn 94 (139)
T PLN00156 30 FPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
T ss_pred cchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccC
Confidence 4544555555442 244788999999999999999999999999999999999999999999854
No 56
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=88.84 E-value=0.26 Score=45.93 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 20 NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 20 ~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
+....|..+|-+.+|.+|-.+.+++..++.|+||-|+.+.||..|.+.++-
T Consensus 85 rfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg~ 135 (137)
T KOG1745|consen 85 RFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 135 (137)
T ss_pred eehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcccC
Confidence 345689999999999999999999999999999999999999999988753
No 57
>PLN00153 histone H2A; Provisional
Probab=88.24 E-value=1.1 Score=41.50 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=51.9
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 4 VPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 4 ~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
||---|.+.... --..+++..+.-.||.-+||-..||++-|..-++..|++++++.+|..|++-
T Consensus 25 FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 89 (129)
T PLN00153 25 FPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRN 89 (129)
T ss_pred cchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccC
Confidence 344444444433 2234788889999999999999999999999999999999999999999854
No 58
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.23 E-value=16 Score=39.54 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=110.8
Q ss_pred HHHHhhhccCC-cccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcC----C-Ccccccchhh-hHHHHHHHHhc
Q 009433 194 QALLSLAMDSG-LHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRN----P-HIHIEPYLHQ-MMPSVITCLVS 266 (535)
Q Consensus 194 ~AL~sL~tD~g-L~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~N----p-~L~IepYLHq-LlPsvLTCll~ 266 (535)
++|..+.+++. +..++|+++.-+... .... .+......+++.+..++.+ . +...+-|.|. ++|.++..++.
T Consensus 24 ~~l~~ls~~~~i~~~~~~~ll~kl~~~-~~~~-~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~ 101 (415)
T PF12460_consen 24 EALAALSTSPQILETLSIRLLNKLSIV-CQSE-SSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQ 101 (415)
T ss_pred HHHHHHHCChhHHHHHHHHHHHHHHHH-hcCC-CChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHh
Confidence 46677777776 455556555555433 2211 1444444444444444443 3 5677889997 88888888777
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc----------CCCCCchhhhhHHHHHHhhCh
Q 009433 267 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL----------DPTKSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 267 k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~ll----------dp~k~l~t~YGAI~GL~aLG~ 336 (535)
...+... .++.+=+.+++++..|++..+ ..-|..+...+...|+ +...........+.-+.++=.
T Consensus 102 ~~~~~~~--~~~~~L~~~~~l~~~iv~~l~---~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~ 176 (415)
T PF12460_consen 102 ASDQSSD--LDDRVLELLSRLINLIVRSLS---PEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILC 176 (415)
T ss_pred hcccccc--cchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHH
Confidence 6543321 567888999999999999877 4667788888888877 111100111111111111111
Q ss_pred hhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHH--hhhhhhhhhhhh
Q 009433 337 SVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA--AGLCVYDRLKTV 394 (535)
Q Consensus 337 ~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a--~g~~~~~~~~~~ 394 (535)
-.=+.+.+|....+.+.+....... .+...|.-+.++..+|++= -|..+.+.+..+
T Consensus 177 ~l~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~ 234 (415)
T PF12460_consen 177 SLRKDVSLPDLEELLQSLLNLALSS--EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSL 234 (415)
T ss_pred cCCcccCccCHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Confidence 1224456777777777666554322 2355667777788877775 344444444444
No 59
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.12 E-value=8.1 Score=46.15 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=87.5
Q ss_pred cccccchhhhhhhchhhhccc-----CChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchH
Q 009433 205 LHPLVPYFTYFISEEVVTRSL-----KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWD 279 (535)
Q Consensus 205 L~qLLPYfv~FI~e~vV~~nl-----~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~ 279 (535)
+|+++|-++.-+.-. |..+. .-+..+..+.++++-|-.|..+.-.||+|.++-+.+.-+-+ .+..-.
T Consensus 514 fhp~~~~Ls~~v~~a-V~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a-------~d~Dqe 585 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAA-VGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA-------TDSDQE 585 (1233)
T ss_pred cccchhhhhhHHHHH-hcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc-------ccccHH
Confidence 455555444444333 33322 23455566788888888888999999999766654444322 255679
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHH
Q 009433 280 LRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 352 (535)
Q Consensus 280 LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 352 (535)
.|+.|-.++++++-.||....+=-+|+.-.|.+-+. .-.|.--|+.+|.-+---..+.-+.|++..++.
T Consensus 586 VkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~----nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~ 654 (1233)
T KOG1824|consen 586 VKERAISCMGQIIANFGDFLGNELPRTLPILLERLG----NEITRLTAVKALTLIAMSPLDIDLSPVLTEILP 654 (1233)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh----chhHHHHHHHHHHHHHhccceeehhhhHHHHHH
Confidence 999999999999999997776666777777776664 445666677776655333333333344444333
No 60
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=86.40 E-value=2.7 Score=35.58 Aligned_cols=94 Identities=9% Similarity=0.046 Sum_probs=60.7
Q ss_pred ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchh-hhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 208 LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 208 LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
++|+++.++.+. +.......+..+..+..+..-....++. ..+|.++.++- +++..+|..|..
T Consensus 8 ~i~~l~~~l~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------~~~~~v~~~a~~ 71 (120)
T cd00020 8 GLPALVSLLSSS-------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---------SEDEEVVKAALW 71 (120)
T ss_pred ChHHHHHHHHcC-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---------CCCHHHHHHHHH
Confidence 677777777665 4556666677777888874333344443 78888888862 245699999999
Q ss_pred HHHHHHHHhCCCchh-HHHHHHHHHHHHhcCC
Q 009433 287 LIASICTRFGHVYQN-LQSRVTRTLLHAFLDP 317 (535)
Q Consensus 287 lL~~I~~~~~~~y~~-L~~RI~~tL~k~lldp 317 (535)
+|..|+......-.- .+.-++..+.+.+.++
T Consensus 72 ~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 72 ALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHccCcHHHHHHHHHCCChHHHHHHHhcC
Confidence 999999754321111 1122566667776654
No 61
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=85.67 E-value=0.93 Score=39.47 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 19 YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 19 ~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.+-.+|.+..+-+-|...|.+++++|.+.+.+.+|++++++|+-.++|-
T Consensus 18 ~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 18 EEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhc
Confidence 3556789999999999999999999999999999999999999998873
No 62
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=85.00 E-value=17 Score=41.32 Aligned_cols=170 Identities=17% Similarity=0.146 Sum_probs=113.8
Q ss_pred ccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHH
Q 009433 201 MDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDL 280 (535)
Q Consensus 201 tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 280 (535)
+.-|+.-++|-++.=+-+. .+..-...++.+.+|..=-...++.++..++|.+...+ .|.|=.+
T Consensus 248 ~~~aVK~llpsll~~l~~~-------kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl---------~DT~~ev 311 (569)
T KOG1242|consen 248 SAYAVKLLLPSLLGSLLEA-------KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL---------WDTKPEV 311 (569)
T ss_pred CcchhhHhhhhhHHHHHHH-------hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH---------ccCCHHH
Confidence 3445566666555544333 44455556777778888888888999999998544432 3567799
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCC-Cchh------------------------------------
Q 009433 281 RNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK-SLSQ------------------------------------ 323 (535)
Q Consensus 281 Rd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k-~l~t------------------------------------ 323 (535)
|+-+-..|-.+|..-.+ +. -.++..+|+.++.||++ ...+
T Consensus 312 r~a~~~~l~~~~svidN--~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~ 388 (569)
T KOG1242|consen 312 RKAGIETLLKFGSVIDN--PD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSI 388 (569)
T ss_pred HHHHHHHHHHHHHhhcc--HH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchh
Confidence 99999999999987665 33 45788999999999993 2221
Q ss_pred hhhHHHHHHhhChhh-hHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 009433 324 HYGAIQGLAALGPSV-VHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLK 392 (535)
Q Consensus 324 ~YGAI~GL~aLG~~a-Vr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~~~~ 392 (535)
+=+++.-.-.|-..+ =...+-|.|+.+...|+..+... ...+|..|.|.+|+++..+|.-..+.+.
T Consensus 389 kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~g~~~f~d~~ 455 (569)
T KOG1242|consen 389 KRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA---VPEVRAVAARALGALLERLGEVSFDDLI 455 (569)
T ss_pred hhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 222333322222222 13345677777777776665432 4568999999999999999988665443
No 63
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=84.07 E-value=0.95 Score=46.24 Aligned_cols=63 Identities=27% Similarity=0.372 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------CHhhHHHHhhccC
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVL------TANDVDSALNLRN 69 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~L------t~~DI~~AL~~~n 69 (535)
..|..|+...|+..+++|+...|+.-+|.||+.||..++...+|-.+.-- ..+||...|+.++
T Consensus 51 ~~i~~i~~~~g~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~~~~~~~~~~~sdv~~qlr~l~ 119 (264)
T PF05236_consen 51 KRIQKIAKKHGLKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDSSKSDPRYEIRSDVRKQLRFLE 119 (264)
T ss_dssp HHHHHHHHCTT--EE-TCHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccchHHHHHHHHHH
Confidence 56788999999989999999999999999999999999999999766533 3667777776654
No 64
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=84.05 E-value=2.8 Score=43.41 Aligned_cols=60 Identities=27% Similarity=0.309 Sum_probs=54.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHhh
Q 009433 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALN 66 (535)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrh--skR~~Lt~~DI~~AL~ 66 (535)
...|+..|+..|++ +++++++.|++.+...+..+.+|--|+.-. +++.++|.+||+..+.
T Consensus 136 ~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 136 KQLVERTAQELGVK-LTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc
Confidence 36789999999995 999999999999999999999999999988 5688999999998774
No 65
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=83.99 E-value=3.3 Score=36.09 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=48.1
Q ss_pred HHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 9 IEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 9 V~~iAes~Gi~-~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
|+.+.=..|=. +-.+|.+..|-+-|...+.+++.+|..++. ++|.+++++|+-.++|-
T Consensus 8 i~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~ 66 (92)
T cd07978 8 IRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRK 66 (92)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhc
Confidence 55555555654 445689999999999999999999999999 88889999999999863
No 66
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=83.51 E-value=3.7 Score=40.64 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=51.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------ccCHhhHHHHhhccC
Q 009433 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT------VLTANDVDSALNLRN 69 (535)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~------~Lt~~DI~~AL~~~n 69 (535)
...|..|+..-|+..+++++...|+..+|.|++.|++.++.+.+|-... ....+|+...|+.+|
T Consensus 51 ~~~~~~i~~~~g~~~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~~~~~~~r~~~~sdvr~qL~~l~ 120 (212)
T cd08045 51 AKKIRKIAKKHGLKEVDEDVLDLISLALEERLRNLLEKLIEVSEHRVDSEKEDERYEITSDVRKQLRFLE 120 (212)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCceeecchHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999997443 344455555554443
No 67
>PTZ00252 histone H2A; Provisional
Probab=82.97 E-value=3.8 Score=38.22 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHhhc
Q 009433 4 VPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALNL 67 (535)
Q Consensus 4 ~~~e~V~~iAes~G-i~~lsdeaa~~La~dveyrireIiqeA~Kfmrh--skR~~Lt~~DI~~AL~~ 67 (535)
||---|.+....-. ..+++..++-.||.-+||-..||++-|.+-++. .|++++++.||..|++-
T Consensus 26 FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrN 92 (134)
T PTZ00252 26 FPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRH 92 (134)
T ss_pred CchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccC
Confidence 34444444443322 347889999999999999999999999999976 68899999999999853
No 68
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=82.87 E-value=6.8 Score=37.11 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 4 VPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 4 ~~~e~V~~iAes~Gi--~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
+|++||.-|...+== -++..|+-..|-..--+.|.-|-.+|.+.+....++|+.++||-.||+.++.
T Consensus 13 LPkAtv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF 81 (156)
T KOG0871|consen 13 LPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGF 81 (156)
T ss_pred CcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcch
Confidence 899999887776532 2577888888888888999999999999999999999999999999987653
No 69
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=82.84 E-value=1.7 Score=36.27 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCHhhHHHHhh
Q 009433 5 PKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTV-LTANDVDSALN 66 (535)
Q Consensus 5 ~~e~V~~iAes~Gi----~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~-Lt~~DI~~AL~ 66 (535)
|+++|.++.. ... ++++.++.+..++.++-.++|.+..|..-++..+... +..+|++..+-
T Consensus 1 p~~li~rll~-~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~p 66 (72)
T PF09415_consen 1 PPELIARLLH-EHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILP 66 (72)
T ss_dssp -CHHHHHHHC-TTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCH
T ss_pred ChHHHHHHHH-HHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6788888887 444 3688999999999999999999999999999999998 99999998764
No 70
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=81.50 E-value=7.6 Score=37.50 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=57.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCccCHhhHHHHhhcc
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH--------------RTVLTANDVDSALNLR 68 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrhsk--------------R~~Lt~~DI~~AL~~~ 68 (535)
.||-+-+.-+.++.|+.-.+..+.+.++-.....+..|+++|.+..|--. +-+||.+|+..||+..
T Consensus 86 ~IPDavt~~yL~~aGf~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~tLtmeDL~~AL~Ey 165 (176)
T KOG3423|consen 86 TIPDAVTDHYLKKAGFQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKYTLTMEDLSPALAEY 165 (176)
T ss_pred CCcHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceeeeHHHHHHHHHHh
Confidence 46777888899999998777799999999999999999999998876322 3379999999999986
Q ss_pred CC
Q 009433 69 NV 70 (535)
Q Consensus 69 nv 70 (535)
++
T Consensus 166 Gi 167 (176)
T KOG3423|consen 166 GI 167 (176)
T ss_pred Cc
Confidence 55
No 71
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=80.73 E-value=12 Score=40.66 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhcC----CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhC-CCchhHHH
Q 009433 230 LLFALMRVARSLLRN----PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG-HVYQNLQS 304 (535)
Q Consensus 230 ~L~~Lmrmv~ALl~N----p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~-~~y~~L~~ 304 (535)
.+..++.++.-|+.. +.=.+.--+..++|++|-|++-- +++-..|..|-.++..|++.+. .+....+.
T Consensus 227 ~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v-------~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~ 299 (373)
T PF14911_consen 227 RLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLV-------NEEPQVKKLATELLQYMVESCQVGSSGEPRE 299 (373)
T ss_pred cHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhc-------CCCcchhHHHHHHHHHHHHcccccCcchHHH
Confidence 344455566666666 44455555677899999998652 4566889999999999998765 44455555
Q ss_pred HHHHHHHHHhcCCC-CCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhh
Q 009433 305 RVTRTLLHAFLDPT-KSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPE 357 (535)
Q Consensus 305 RI~~tL~k~lldp~-k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~ 357 (535)
.++..+.....+-- ..-...|+-+.-++.+-++.|.. ++|.++.-...-|..
T Consensus 300 ~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~-Lip~i~q~l~~~E~k 352 (373)
T PF14911_consen 300 QLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVIS-LIPTIRQSLKDSERK 352 (373)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHH
Confidence 55555544432211 12234668888899999999987 678777766655543
No 72
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=80.53 E-value=4.1 Score=42.56 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHhhHHHHhhc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH-RTVLTANDVDSALNL 67 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrhsk-R~~Lt~~DI~~AL~~ 67 (535)
..|+..|+..|+ .+++++++.|++.++..+..+.+|--|+.--+. .+++|.+||+..+-.
T Consensus 149 ~~i~~~~~~~g~-~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 149 RLIDDELAEAGL-RITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD 209 (343)
T ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Confidence 568999999999 599999999999999999999999999998754 568999999988743
No 73
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=80.38 E-value=5.7 Score=40.18 Aligned_cols=60 Identities=27% Similarity=0.226 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
..|+..++..|+ ++++++++.|+..+...++.+.+|.-|+.--++.+.+|.+||+..+..
T Consensus 118 ~~i~~~~~~~g~-~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~ 177 (302)
T TIGR01128 118 RWIQARLKKLGL-RIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSD 177 (302)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhh
Confidence 368888999999 599999999999999999999999999988876668999999988843
No 74
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=80.28 E-value=4.4 Score=41.84 Aligned_cols=60 Identities=22% Similarity=0.150 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
..|+..+++.|+ ++++++++.|++.+...+..+.+|.-|+.--++-+++|.+||+..+..
T Consensus 153 ~~i~~~~~~~g~-~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~ 212 (340)
T PRK05574 153 QWIQQRLKQQGL-QIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPD 212 (340)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhh
Confidence 568889999999 599999999999999999999999999987763333999999988754
No 75
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=79.44 E-value=44 Score=38.19 Aligned_cols=147 Identities=13% Similarity=0.074 Sum_probs=92.6
Q ss_pred HHHHHHHHHccCCch-HHHH--HHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCccccc
Q 009433 175 YFDKIRELTVSRSNS-TVFK--QALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEP 251 (535)
Q Consensus 175 Yf~kIt~all~~~~~-~~r~--~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~Iep 251 (535)
+|.+.+.-+++...- .++. -++..+-++.++..+-|+-+-=--.. -..+.++...-...+....++..|=+-.-||
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~-ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EP 212 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSK-AIIDKKSALNREAALLAFEAAQGNLGPPFEP 212 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHH-HhcccchhhcHHHHHHHHHHHHHhcCCCCCc
Confidence 555555555542222 2222 26789999999999988743211111 1112222222213455667788888889999
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009433 252 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 331 (535)
Q Consensus 252 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL 331 (535)
|+-.++|.+++|.=. ..=.+|+-|......|.+.+.. ..++-.+...+...+.+ ...+.=+++-+|
T Consensus 213 yiv~~lp~il~~~~d---------~~~~Vr~Aa~~a~kai~~~~~~--~aVK~llpsll~~l~~~---kWrtK~aslell 278 (569)
T KOG1242|consen 213 YIVPILPSILTNFGD---------KINKVREAAVEAAKAIMRCLSA--YAVKLLLPSLLGSLLEA---KWRTKMASLELL 278 (569)
T ss_pred hHHhhHHHHHHHhhc---------cchhhhHHHHHHHHHHHHhcCc--chhhHhhhhhHHHHHHH---hhhhHHHHHHHH
Confidence 999999999999622 2227899999998888887654 34555555544444332 677788888888
Q ss_pred HhhCh
Q 009433 332 AALGP 336 (535)
Q Consensus 332 ~aLG~ 336 (535)
.+|+.
T Consensus 279 g~m~~ 283 (569)
T KOG1242|consen 279 GAMAD 283 (569)
T ss_pred HHHHH
Confidence 87764
No 76
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=79.07 E-value=5.2 Score=42.07 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
..|+..+.+.|+ +++++|++.|++.++..+..+.+|--|+.--+.-+.+|.+||+.++-
T Consensus 147 ~~i~~~~~~~~l-~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~ 205 (334)
T COG1466 147 QWIKKRAKELGL-KIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVS 205 (334)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHh
Confidence 578999999999 69999999999999999999999999999999888999999999883
No 77
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=77.70 E-value=14 Score=31.12 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=49.1
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 285 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 285 (535)
..+|.++.++.+. |.......+.....|..++.-..+.+. +.++|.++.++- +.+...|+.|.
T Consensus 49 ~~i~~l~~~l~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~---------~~~~~~~~~a~ 112 (120)
T cd00020 49 GGLPALVQLLKSE-------DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD---------SSNEDIQKNAT 112 (120)
T ss_pred CChHHHHHHHhCC-------CHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh---------cCCHHHHHHHH
Confidence 4566666666553 556666677788888888764444444 457888887752 33679999999
Q ss_pred HHHHHHH
Q 009433 286 DLIASIC 292 (535)
Q Consensus 286 ~lL~~I~ 292 (535)
.+|..||
T Consensus 113 ~~l~~l~ 119 (120)
T cd00020 113 GALSNLA 119 (120)
T ss_pred HHHHHhh
Confidence 9999887
No 78
>PRK07914 hypothetical protein; Reviewed
Probab=76.58 E-value=5.7 Score=41.40 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=51.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
..+|+..|++.|++ ++.++++.|++-++..+..+.+|.-|+.-..+ ..+|.+||+..+.
T Consensus 134 ~~wi~~~a~~~g~~-i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~-~~It~e~V~~~v~ 192 (320)
T PRK07914 134 ADFVRKEFRSLRVK-VDDDTVTALLDAVGSDLRELASACSQLVADTG-GAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHCccHHHHHHHHHHHhcCCC-CCcCHHHHHHHcC
Confidence 45799999999995 99999999999999999999999999876544 5799999988764
No 79
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=75.74 E-value=3.6 Score=40.55 Aligned_cols=70 Identities=24% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCHhhHHHHhhccCCC
Q 009433 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR-TVLTANDVDSALNLRNVE 71 (535)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR-~~Lt~~DI~~AL~~~nvE 71 (535)
|-+|+..||..+.++-=..+++.++.+++.-..-.+-|||++|...|..-+- .-|.+.||..|.+.+..+
T Consensus 111 s~f~Ka~iKkL~~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rrL~~q 181 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSSITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRRLKLQ 181 (195)
T ss_pred hcCCHHHHHHHHHHHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHhc
Confidence 4689999999999887777999999999999999999999999999876554 469999999999987654
No 80
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.66 E-value=48 Score=39.09 Aligned_cols=151 Identities=17% Similarity=0.242 Sum_probs=87.7
Q ss_pred ccCChHHHH--HHHHHHHHhhcCCCcccccchhhhHHHHHH----HHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 009433 224 SLKNFSLLF--ALMRVARSLLRNPHIHIEPYLHQMMPSVIT----CLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH 297 (535)
Q Consensus 224 nl~nl~~L~--~Lmrmv~ALl~Np~L~IepYLHqLlPsvLT----Cll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~ 297 (535)
|.+|+..-- .||. |+.|-.-..-+-+.++.+.++. |+=+..++-...+.+-.|.+.=...|..|++|.++
T Consensus 513 nqsNLR~AAYeALmE----lIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 513 NQSNLRSAAYEALME----LIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred chhhHHHHHHHHHHH----HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 445554432 3443 3445544444444555544443 33222333322345667777777889999999999
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCc---hhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhH--hhhhhhhHHHH
Q 009433 298 VYQNLQSRVTRTLLHAFLDPTKSL---SQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLE--KQKNEMKRHEA 372 (535)
Q Consensus 298 ~y~~L~~RI~~tL~k~lldp~k~l---~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~--~~~~~~~r~ea 372 (535)
.....--.|+..|++.|-. .++- ..-+|||.+|.+ .+=+++..|...+.|.|.-. ...+..+-.-|
T Consensus 589 ~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~--------~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~a 659 (859)
T KOG1241|consen 589 DIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAE--------SLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAA 659 (859)
T ss_pred cchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHH--------HHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999999999999876 3443 346777777765 23345566666666665421 11122233345
Q ss_pred HHHHHHHHHHhhhhh
Q 009433 373 WRVYGALQCAAGLCV 387 (535)
Q Consensus 373 ~~v~~aLl~a~g~~~ 387 (535)
.-+.|-|-+|.+.-+
T Consensus 660 VglVgdl~raL~~~i 674 (859)
T KOG1241|consen 660 VGLVGDLARALEDDI 674 (859)
T ss_pred HHHHHHHHHHHHhhh
Confidence 555666666665543
No 81
>PRK05629 hypothetical protein; Validated
Probab=75.59 E-value=7.4 Score=40.46 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
.+|+..|++.|.+ +++++++.|++.+...+..+.+|--|+.-.. ..++|.+||+..+
T Consensus 133 ~wi~~~~~~~g~~-i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~-~~~It~e~V~~~v 189 (318)
T PRK05629 133 GWVTQEFKNHGVR-PTPDVVHALLEGVGSDLRELASAISQLVEDT-QGNVTVEKVRAYY 189 (318)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHCccHHHHHHHHHHHHhcC-CCCcCHHHHHHHh
Confidence 5799999999995 9999999999999999999999999987665 4579999998765
No 82
>PRK05907 hypothetical protein; Provisional
Probab=75.59 E-value=6.4 Score=41.37 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=54.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCccCHhhHHHHhh
Q 009433 6 KETIEVIAQSIGVYNLSSDVALALAPDV-EYRVREIMQEAIKCMRH-AHRTVLTANDVDSALN 66 (535)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dv-eyrireIiqeA~Kfmrh-skR~~Lt~~DI~~AL~ 66 (535)
..+|...++..|. .++.++++.|++.+ +.-+..+.+|--|++-. +.++++|.+||+....
T Consensus 140 ~~Wi~~~~~~~g~-~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 140 AQLLIQRAKELGI-SCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVV 201 (311)
T ss_pred HHHHHHHHHHcCC-CcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhc
Confidence 4689999999999 59999999999999 79999999999999998 6688999999998763
No 83
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=75.06 E-value=8.6 Score=40.28 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=52.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 6 ~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
..+|+..|+..|++ +++++++.|++-+...+..+.+|--|+.--++ ++|.+||+....
T Consensus 141 ~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~--~It~edV~~~v~ 198 (328)
T PRK08487 141 LELLQERAKELGLD-IDQNALNHLYFIHNEDLALAANELEKLAILNE--PITLKDIQELVF 198 (328)
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC--CCCHHHHHHHhc
Confidence 35799999999995 99999999999999999999999999998865 699999998763
No 84
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=72.69 E-value=11 Score=42.43 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVE-----------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dve-----------yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
.|..+++.-|+..++.+|...|.+... ..|.++++||.-+++..+++.++.+||+.|++.+
T Consensus 435 ~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 435 FIASICQKEGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEER 506 (509)
T ss_dssp HHHHHHHHHSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH-
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHcc
Confidence 577889999999999998888877654 3689999999999999999999999999999875
No 85
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.43 E-value=24 Score=34.54 Aligned_cols=139 Identities=20% Similarity=0.231 Sum_probs=85.2
Q ss_pred HHHHHHHhhcC-CCcccccchhhhHHHH-----------HHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH-------
Q 009433 234 LMRVARSLLRN-PHIHIEPYLHQMMPSV-----------ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR------- 294 (535)
Q Consensus 234 Lmrmv~ALl~N-p~L~IepYLHqLlPsv-----------LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~------- 294 (535)
-+.++.+|+++ +.=.+-.|.+.|+|.. +||++. |..-..|--|+++|+.+...
T Consensus 6 Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~--------Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 6 ALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK--------DPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred HHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc--------CCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 45677899999 7778899999999865 444433 44558999999999999863
Q ss_pred ------hCCCchhHHHHH-------HHHHHHHhcCCCCCchhhhhHHHHHHhhChhhh-HhhcccchHHHHHhhhhhhhh
Q 009433 295 ------FGHVYQNLQSRV-------TRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV-HLLILPNLELYLKFLEPEMLL 360 (535)
Q Consensus 295 ------~~~~y~~L~~RI-------~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aV-r~lllP~L~~y~~~Le~~l~~ 360 (535)
-..+|..+-.++ -+.|..++..++ ...+.=-.+.+|..|-..+= ..+=-..+...+..+.+.+..
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 122444443333 344455555433 33444455666666533221 111123444555555555432
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHhh
Q 009433 361 EKQKNEMKRHEAWRVYGALQCAAG 384 (535)
Q Consensus 361 ~~~~~~~~r~ea~~v~~aLl~a~g 384 (535)
.+..++..+.-|+|+|+.+..
T Consensus 157 ---~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 157 ---RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred ---CCCcHHHHHHHHHHHHHcCCC
Confidence 456678889999999987654
No 86
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=72.16 E-value=22 Score=27.91 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=43.5
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH 50 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrh 50 (535)
.+|.+-+.-+.+..|+..-+..+.+.++--....+.+|+.+|..+.|.
T Consensus 2 ~IPD~v~~~yL~~~G~~~~D~rv~RLvSLaaQKFisdI~~dA~q~~k~ 49 (51)
T PF03540_consen 2 TIPDEVTDYYLERSGFQTSDPRVKRLVSLAAQKFISDIANDAMQYCKI 49 (51)
T ss_pred CCCHHHHHHHHHHCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999998888999999999999999999999888764
No 87
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=69.97 E-value=78 Score=35.03 Aligned_cols=159 Identities=15% Similarity=0.149 Sum_probs=103.0
Q ss_pred CcHHHHHHHHHHHHHHccCCchHHHHHHHHhhhccCC-----cccccchhhhhhhchhh-----------------hccc
Q 009433 168 LSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSG-----LHPLVPYFTYFISEEVV-----------------TRSL 225 (535)
Q Consensus 168 LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~g-----L~qLLPYfv~FI~e~vV-----------------~~nl 225 (535)
+.-+-..||+.|++.-. .++-..+-+||..|..+-. ...+.|.+++|+..- . ..+.
T Consensus 64 ~~~~R~~fF~~I~~~~~-~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~-~~~~~~~r~~~~~~~~~~~~~~ 141 (464)
T PF11864_consen 64 SGLMRAEFFRDISDPSN-DDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPS-YQAARSARRKAKKSSSSKSKGL 141 (464)
T ss_pred cHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHH-HHHHHHHHHHhhcccccccccc
Confidence 45667889999976532 2345677789999987643 667899999999765 4 0111
Q ss_pred ----CChHHHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhcccc-----------------CCCC----------
Q 009433 226 ----KNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRL-----------------GNRF---------- 273 (535)
Q Consensus 226 ----~nl~~L~~Lmrmv~ALl~Np~L~Ie-pYLHqLlPsvLTCll~k~l-----------------~~~~---------- 273 (535)
.+-..+..+++++..+++.++-+++ ..++.++-.+++++-...- |.-|
T Consensus 142 ~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~v 221 (464)
T PF11864_consen 142 SNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEV 221 (464)
T ss_pred ccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHH
Confidence 1445678899999999999998886 7788888877766433210 1101
Q ss_pred ---CCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc--CCC--CCchhhhhHHHHHHhh
Q 009433 274 ---SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL--DPT--KSLSQHYGAIQGLAAL 334 (535)
Q Consensus 274 ---~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~ll--dp~--k~l~t~YGAI~GL~aL 334 (535)
.-+.=.+.+.|-+++..+|+.+. ....+++|...|. |+. +.....=|||.-|..+
T Consensus 222 LCsi~~~~~l~~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 222 LCSIVNSVSLCKPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRML 283 (464)
T ss_pred HhhHhcccccchhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHH
Confidence 01222666667777777776332 2457788888884 332 2233344998887776
No 88
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=66.28 E-value=20 Score=40.40 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=46.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVE-Y-RVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dve-y-rireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
++..|+..|+ .+++++.+.|+.... . .+..+++.|...+...+|..++.+||..++.....
T Consensus 272 l~~~a~k~~i-~is~~al~~I~~y~~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~~ 334 (531)
T TIGR02902 272 AKNAAEKIGI-NLEKHALELIVKYASNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGNY 334 (531)
T ss_pred HHHHHHHcCC-CcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCccc
Confidence 4556777887 599999998876554 1 26677888888887778899999999999876544
No 89
>PRK09687 putative lyase; Provisional
Probab=65.50 E-value=36 Score=35.15 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=45.4
Q ss_pred hhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 255 QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 255 qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
.-+|.++.++ .++.|.+|..|+.-|+.+ .+++ +.+...|.+.+.|+ .....-+|+.||..+
T Consensus 159 ~ai~~L~~~L---------~d~~~~VR~~A~~aLg~~--~~~~------~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 AAIPLLINLL---------KDPNGDVRNWAAFALNSN--KYDN------PDIREAFVAMLQDK--NEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHh---------cCCCHHHHHHHHHHHhcC--CCCC------HHHHHHHHHHhcCC--ChHHHHHHHHHHHcc
Confidence 4566666664 356778999999999988 3322 35667777777765 445677899999988
Q ss_pred Chh
Q 009433 335 GPS 337 (535)
Q Consensus 335 G~~ 337 (535)
|..
T Consensus 220 ~~~ 222 (280)
T PRK09687 220 KDK 222 (280)
T ss_pred CCh
Confidence 774
No 90
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=64.33 E-value=18 Score=33.49 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=40.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 16 IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 16 ~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
+|| +.++...+-..+...+..|+.||.++++-.||.+++..+|..|.+++
T Consensus 54 ~gi---s~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 54 LGI---SSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred CCc---CHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 564 45555555555666688889999999999999999999999999875
No 91
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=64.27 E-value=22 Score=31.84 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=49.9
Q ss_pred CCChHHHHHHHH---HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQ---SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAe---s~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
-+|.+-||.|.+ .+|- ++...--.....+|..+.+|++++.|-+|.-.-+++|.+.+.+|...
T Consensus 23 rFP~ar~KkIMQ~deDiGK--V~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~s 88 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGK--VGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATES 88 (113)
T ss_pred cCCHHHHHHHHHhhhhhhh--hhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhh
Confidence 478888888865 3343 44444445677899999999999999999999999999999999753
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=63.18 E-value=16 Score=37.94 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+.++.+++..|+ .+++++++.|++-++-.++.++++.-|....+++ ++|.+||+.++.
T Consensus 183 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~-~it~~~v~~~~~ 240 (355)
T TIGR02397 183 ERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLLDQLISFGNG-NITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCC-CCCHHHHHHHhC
Confidence 356777788998 5999999999999998899999998888887764 599999998773
No 93
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.63 E-value=1.6e+02 Score=36.19 Aligned_cols=183 Identities=16% Similarity=0.140 Sum_probs=109.9
Q ss_pred HHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC
Q 009433 194 QALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF 273 (535)
Q Consensus 194 ~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~ 273 (535)
+||.-|+..=|=.+++|-+..++..- .+. .++..-...|..+-++..=-+=.++.-|.+++|.|+..+
T Consensus 331 ~~lDrlA~~L~g~~v~p~~~~~l~~~-l~S--~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l--------- 398 (1075)
T KOG2171|consen 331 QALDRLALHLGGKQVLPPLFEALEAM-LQS--TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL--------- 398 (1075)
T ss_pred HHHHHHHhcCChhhehHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc---------
Confidence 57888888877666666666666543 222 266665666666666666665566666666666655442
Q ss_pred CCcchHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHH
Q 009433 274 SDNHWDLRNFVADLIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 352 (535)
Q Consensus 274 ~~~hw~LRd~AA~lL~~I~~~~~~~y~~-L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 352 (535)
.|.|=.+|.-|-+.++++..-|...... =..|+.--|.-.+ |...+...+--|-.+|.++--+.-...|-|.|+.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l-d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL-DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh-cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 5779999999999999988766532221 1233444444443 4444444444556667777677777778899999988
Q ss_pred hhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009433 353 FLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV 394 (535)
Q Consensus 353 ~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~~~~~~ 394 (535)
.+-..+.. ..++.--+.|..||=.++..+-...++-|
T Consensus 478 ~~l~~L~~-----~~~~~v~e~vvtaIasvA~AA~~~F~pY~ 514 (1075)
T KOG2171|consen 478 KKLLLLLQ-----SSKPYVQEQAVTAIASVADAAQEKFIPYF 514 (1075)
T ss_pred HHHHHHhc-----CCchhHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 53333321 11222234466666666665554444444
No 94
>PRK09687 putative lyase; Provisional
Probab=61.54 E-value=27 Score=36.05 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=44.9
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009433 275 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 337 (535)
Q Consensus 275 ~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 337 (535)
+..|.+|..|+..|+++|..... -.+++...+...+.|+ +...+++|+.+|..+|..
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDK--STNVRFAVAFALSVINDE 158 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCH
Confidence 56789999999999999764322 2467888888888876 557899999999998753
No 95
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=61.39 E-value=58 Score=35.52 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=53.0
Q ss_pred cHHH-HHHHHHHHHHHccCCchHHHHHHH----HhhhccCCcc-c-ccchhhhhhhchhhhcccCChHHHHHHHHHHHHh
Q 009433 169 SKEL-QLYFDKIRELTVSRSNSTVFKQAL----LSLAMDSGLH-P-LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSL 241 (535)
Q Consensus 169 SkEl-Q~Yf~kIt~all~~~~~~~r~~AL----~sL~tD~gL~-q-LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~AL 241 (535)
+.|. +..+..|.+.+ ..+++..|+.|+ +-.+.+|.+- . ++|.+.+.+.+. |.......+.++..+
T Consensus 108 ~~~~~~~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~-------~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK-------DPSVVSAALSLLSEI 179 (526)
T ss_dssp SHHHHHHHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS-------SHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC-------cchhHHHHHHHHHHH
Confidence 5565 44556666555 445666677544 4457778763 3 577777777655 666666667777666
Q ss_pred hcCCCcccccchhhhHHHHHHHH
Q 009433 242 LRNPHIHIEPYLHQMMPSVITCL 264 (535)
Q Consensus 242 l~Np~L~IepYLHqLlPsvLTCl 264 (535)
-.|+..+. ..+|.++..+..++
T Consensus 180 ~~~~~~~~-~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 180 KCNDDSYK-SLIPKLIRILCQLL 201 (526)
T ss_dssp HCTHHHHT-THHHHHHHHHHHHH
T ss_pred ccCcchhh-hhHHHHHHHhhhcc
Confidence 55666655 56666666555543
No 96
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.29 E-value=23 Score=44.36 Aligned_cols=80 Identities=13% Similarity=0.315 Sum_probs=65.3
Q ss_pred hhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcch
Q 009433 199 LAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHW 278 (535)
Q Consensus 199 L~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw 278 (535)
.+-.|-+.+|+|.+.+|=++- +...-..|-.+=.+|+.-+..-++.|+..|+-=+|-- ..+..|
T Consensus 990 ~kl~p~l~kLIPrLyRY~yDP-------~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~---------lt~kew 1053 (1702)
T KOG0915|consen 990 EKLEPYLKKLIPRLYRYQYDP-------DKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN---------LTSKEW 1053 (1702)
T ss_pred HhhhhHHHHhhHHHhhhccCC-------cHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh---------ccchhH
Confidence 344577899999999998887 5556666778889999999999999999888755432 256789
Q ss_pred HHHHHHHHHHHHHHHH
Q 009433 279 DLRNFVADLIASICTR 294 (535)
Q Consensus 279 ~LRd~AA~lL~~I~~~ 294 (535)
+.|+-+.--|+.+++.
T Consensus 1054 RVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQG 1069 (1702)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999985
No 97
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=59.82 E-value=69 Score=30.50 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=69.6
Q ss_pred chHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh-hhHhhcccch-HHHHHhh
Q 009433 277 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS-VVHLLILPNL-ELYLKFL 354 (535)
Q Consensus 277 hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~-aVr~lllP~L-~~y~~~L 354 (535)
|..+|--+...++.+|.+|. ++-.+.+..+.+.|.|+ ....+..|+..|+.|-.+ .++. -+.+ ..+...|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~--k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKV--KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceee--hhhhhHHHHHHH
Confidence 56899999999999999975 56667778888888876 577789999999998332 2221 1222 3444333
Q ss_pred hhhhhhHhhhhhhhHHHHHHHHHHHHHH-hhhhhhhhhhhh
Q 009433 355 EPEMLLEKQKNEMKRHEAWRVYGALQCA-AGLCVYDRLKTV 394 (535)
Q Consensus 355 e~~l~~~~~~~~~~r~ea~~v~~aLl~a-~g~~~~~~~~~~ 394 (535)
. ..|..+|.-|..+..-+..- -+..+++-+...
T Consensus 73 ~-------D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~ 106 (178)
T PF12717_consen 73 V-------DENPEIRSLARSFFSELLKKRNPNIIYNNFPEL 106 (178)
T ss_pred c-------CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 2 23566777777777777666 555555555554
No 98
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=58.54 E-value=22 Score=36.49 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
+.++.+++..|+. +++++++.|+....-.+++++...-+.. ....++|.+||+.++..
T Consensus 191 ~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~~l~~~~--~~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 191 DVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAILTLQTAA--LAAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHhCC
Confidence 3466677788995 9999999999999888999988877766 34458999999998754
No 99
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=58.11 E-value=40 Score=36.80 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=49.9
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009433 253 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 332 (535)
Q Consensus 253 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~ 332 (535)
+..++|.|..|+ .++++.+|..|+-.+.+|++.+.+..+.- +...+.+.|.|++ ....+.|+..+.
T Consensus 112 ~~~l~~~v~~ll---------~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~--~~V~~~a~~~l~ 177 (526)
T PF01602_consen 112 AEPLIPDVIKLL---------SDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKD--PSVVSAALSLLS 177 (526)
T ss_dssp HHHHHHHHHHHH---------HSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSS--HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh---------cCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCc--chhHHHHHHHHH
Confidence 355566666664 35578999999999999999965544331 5677777776554 788888998888
Q ss_pred hh
Q 009433 333 AL 334 (535)
Q Consensus 333 aL 334 (535)
.+
T Consensus 178 ~i 179 (526)
T PF01602_consen 178 EI 179 (526)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 100
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=58.04 E-value=93 Score=34.42 Aligned_cols=141 Identities=16% Similarity=0.256 Sum_probs=79.9
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHhcCCCCCchh
Q 009433 248 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV----YQNLQSRVTRTLLHAFLDPTKSLSQ 323 (535)
Q Consensus 248 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~----y~~L~~RI~~tL~k~lldp~k~l~t 323 (535)
+|.|++.+|+-.++..+-... + .+| ||--+++-+++...... ...+-++++..+..+-.+|++|..+
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~--s--~EN-----eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~Fn 89 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPG--S--AEN-----EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFN 89 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT---S--TC------HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCC--C--ccc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 678888888888888774321 1 344 34445555555544433 4678889999999999999999999
Q ss_pred hh--hHHHHHHhhCh----h---hhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh-hhhhhhhhh
Q 009433 324 HY--GAIQGLAALGP----S---VVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG-LCVYDRLKT 393 (535)
Q Consensus 324 ~Y--GAI~GL~aLG~----~---aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g-~~~~~~~~~ 393 (535)
|| =+|..|..... + .++..++|-+..++..=-.+. --.+.++.+.|+..-. .-+-+..+.
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF----------~PYvfQIla~Lle~~~~~~~p~~y~~ 159 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEF----------IPYVFQILAQLLELRPSSPLPDAYKQ 159 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTT----------HHHHHHHHHHHHHHSS--S--TTTGG
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 99 45555555433 2 355556665555543111111 1246777777777654 112222222
Q ss_pred h---ccCCCccccccccCcc
Q 009433 394 V---LLRPPKQSRWESNRKG 410 (535)
Q Consensus 394 ~---~~~~~~~~~~~~~~~~ 410 (535)
+ |..| ..|...|++
T Consensus 160 L~~~Ll~p---~lWe~~gni 176 (435)
T PF03378_consen 160 LFPPLLSP---ALWERRGNI 176 (435)
T ss_dssp GHHHHTSG---GGGGSTTTH
T ss_pred HHHHHcCc---chhccCCCc
Confidence 2 4444 678877765
No 101
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=55.52 E-value=2.5e+02 Score=34.45 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 009433 227 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV 306 (535)
Q Consensus 227 nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI 306 (535)
+...+...++++.+++.--.-.+..|+..++|.+..- |+....+|=+||++.-+.+....+|+-....-.-+-|
T Consensus 226 q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y------~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei 299 (1233)
T KOG1824|consen 226 QMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADY------CNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEI 299 (1233)
T ss_pred chHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH------hcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHH
Confidence 4566777899999999999999999999999987754 3333466779999999999999998876666666788
Q ss_pred HHHHHHHhc-CCCCCchh-------------------------------hhhHHHHHHhhChhhhHhhcccc---hHHHH
Q 009433 307 TRTLLHAFL-DPTKSLSQ-------------------------------HYGAIQGLAALGPSVVHLLILPN---LELYL 351 (535)
Q Consensus 307 ~~tL~k~ll-dp~k~l~t-------------------------------~YGAI~GL~aLG~~aVr~lllP~---L~~y~ 351 (535)
++.+++.+. ||+-...+ +=-|..++. .+|.-+ |+.++
T Consensus 300 ~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~--------a~IsSR~E~L~~~~ 371 (1233)
T KOG1824|consen 300 INLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLE--------AVISSRLEMLPDFY 371 (1233)
T ss_pred HHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHH--------HHHhccHHHHHHHH
Confidence 888887775 88866555 222333333 333333 34445
Q ss_pred HhhhhhhhhH-hhhhhhhHHHHHHHHHHHHHHhh
Q 009433 352 KFLEPEMLLE-KQKNEMKRHEAWRVYGALQCAAG 384 (535)
Q Consensus 352 ~~Le~~l~~~-~~~~~~~r~ea~~v~~aLl~a~g 384 (535)
..+-|.+-.. +..+++++.|...+|-+|+.-.+
T Consensus 372 q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 372 QTLGPALISRFKEREENVKADVFHAYIALLKQTR 405 (1233)
T ss_pred HHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 5555555332 44578899999999999887554
No 102
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=54.79 E-value=87 Score=35.07 Aligned_cols=159 Identities=13% Similarity=0.194 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHccCCchHH---HHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcc
Q 009433 172 LQLYFDKIRELTVSRSNSTV---FKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIH 248 (535)
Q Consensus 172 lQ~Yf~kIt~all~~~~~~~---r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~ 248 (535)
+..+.+.+.-.|+..++.+. -..+|..+=.+-....+.|.+..|+..+ ..+...+.. ...++.+..++.++.-.
T Consensus 35 l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~g-L~h~~~~Vr--~l~l~~l~~~~~~~~~~ 111 (503)
T PF10508_consen 35 LERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRG-LTHPSPKVR--RLALKQLGRIARHSEGA 111 (503)
T ss_pred HHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-hcCCCHHHH--HHHHHHHHHHhcCCHHH
Confidence 34444444444444333221 2245666666667777788888888888 766433322 22345566666666554
Q ss_pred cccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCCC-CCchhhh
Q 009433 249 IEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPT-KSLSQHY 325 (535)
Q Consensus 249 IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tL~k~lldp~-k~l~t~Y 325 (535)
++... +.++|.|+.|+-. ..-.+-..|+++|..|++. ......| .+.+...|.+.+..++ ......|
T Consensus 112 ~~~~~~~~l~~~i~~~L~~---------~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~ 181 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRD---------PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVY 181 (503)
T ss_pred HHHhcCccHHHHHHHHHcC---------CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHH
Confidence 55444 6789999999833 3347899999999999963 2222222 2222556666654322 2356678
Q ss_pred hHHHHHHhhChhhhHhhc
Q 009433 326 GAIQGLAALGPSVVHLLI 343 (535)
Q Consensus 326 GAI~GL~aLG~~aVr~ll 343 (535)
-.++-++...+++...+.
T Consensus 182 el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 182 ELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHhcCHHHHHHHH
Confidence 888888888887776554
No 103
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=53.25 E-value=32 Score=35.54 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhHHH---------HHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 275 DNHWDLRNFVADLIASICTRFGHVYQNLQS---------RVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 275 ~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~---------RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
.++-.+|--|.+.+-.++-.||..+-.-.. .+.+.|.+.+.+. ....+.=|+-|+..|
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKL 141 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 357799999999999999999977654444 5888999988755 444667777788775
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.98 E-value=30 Score=38.81 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+.++.+++.-|+ .+++++++.|++..+-.+|.++++.-|.+.+++. ++|.+||+..+.
T Consensus 182 ~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~-~It~e~V~~llg 239 (491)
T PRK14964 182 EHLVDIAKKENI-EHDEESLKLIAENSSGSMRNALFLLEQAAIYSNN-KISEKSVRDLLG 239 (491)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHc
Confidence 456788888999 5999999999999999999999999999888874 899999998773
No 105
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=51.98 E-value=13 Score=35.03 Aligned_cols=78 Identities=17% Similarity=0.337 Sum_probs=50.0
Q ss_pred CCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccch--hhhHHHHHHHHhccccCCCCCCcchHH
Q 009433 203 SGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL--HQMMPSVITCLVSKRLGNRFSDNHWDL 280 (535)
Q Consensus 203 ~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYL--HqLlPsvLTCll~k~l~~~~~~~hw~L 280 (535)
-|+..|+-.+.++.... ..+-.+.......++.++||+.|.. -++-.+ +..+..+..|+.+ .+...
T Consensus 107 ~G~~~L~~~L~~~~~~~--~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s---------~~~~~ 174 (187)
T PF06371_consen 107 GGLEALLNVLSKLNKKK--EKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDS---------PNIKT 174 (187)
T ss_dssp HHHHHHHHHHHHHHTHH--CTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--T---------TSHHH
T ss_pred CCHHHHHHHHHHhhhhh--hhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCC---------CCHHH
Confidence 46666665555554332 2233566777788999999998874 233322 3456666666643 34589
Q ss_pred HHHHHHHHHHHH
Q 009433 281 RNFVADLIASIC 292 (535)
Q Consensus 281 Rd~AA~lL~~I~ 292 (535)
|..|..+|+.||
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999998
No 106
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=51.63 E-value=48 Score=38.14 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHHHHcC-CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 9 IEVIAQSIG-VYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 9 V~~iAes~G-i~~lsdeaa~~La~dve-------------yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
|...++.-| +..+++++...|.+... ..+..|+++|..+++..++.+++.+||..|++..
T Consensus 318 i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 318 VAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 344455554 66799999999976544 3478899999989988899999999999999875
No 107
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=51.28 E-value=37 Score=30.75 Aligned_cols=43 Identities=23% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 23 SDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 23 deaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.+.++.|-+-|-.++.++.-+|...+. -|.++.++|+..|||-
T Consensus 30 ~dt~~~L~e~V~dY~~~~ctna~~~Aq--~rnK~k~eDfkfaLr~ 72 (126)
T COG5248 30 YDTAEALHEYVLDYMSILCTNAHNMAQ--VRNKTKTEDFKFALRR 72 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHhh
Confidence 488899999999999999999999888 7899999999999975
No 108
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=50.94 E-value=71 Score=29.75 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 4 VPKETIEVIAQSIGVYN--LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 4 ~~~e~V~~iAes~Gi~~--lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
+|++||+-+..++==.+ .+.|+-..+-..-=|.|.-+--+|.+.+..-+.+++..++|=.||+-+..+
T Consensus 12 LPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~EHviKALenLef~ 81 (148)
T COG5150 12 LPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYEHVIKALENLEFE 81 (148)
T ss_pred CcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccHH
Confidence 89999988877754333 466888877777778899999999999999999999999999999876543
No 109
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]
Probab=50.79 E-value=38 Score=30.47 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 23 SDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 23 deaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
++.++.|-+-|-.+|.++.+.| |.-++|.++..+||..+||-
T Consensus 30 ~~tv~~Le~iV~~Yi~elt~~a---~~~g~rgk~~veD~~f~lRk 71 (109)
T KOG3901|consen 30 PETVDLLEDIVLEYITELTHAA---MEIGKRGKVKVEDFKFLLRK 71 (109)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH---HHhcccCceeHHHHHHHHHh
Confidence 4778888888999999996655 55559999999999999974
No 110
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=50.33 E-value=2.8e+02 Score=28.68 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=78.2
Q ss_pred ccCcHHHHHHHHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhccc-CChHHHHHHHHHHHHhhcC
Q 009433 166 HVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSL-KNFSLLFALMRVARSLLRN 244 (535)
Q Consensus 166 h~LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl-~nl~~L~~Lmrmv~ALl~N 244 (535)
..+|.|.-.+.+++-..... .+++. +..|.. ....-|+..+ .+. .+...+.|++.++.-|+..
T Consensus 24 ~~is~~~~~~ik~~~~~~~~-----~~~~~---~~~~~~--~~~~~~l~lL------~~~~~~~d~v~yvL~li~dll~~ 87 (312)
T PF03224_consen 24 GLISEEDLSLIKKLDKQSKE-----ERREL---LEEDGD--QYASLFLNLL------NKLSSNDDTVQYVLTLIDDLLSD 87 (312)
T ss_dssp TSS-HHHHHHHHHHHHHHH-----------------------------HHH------HHH---HHHHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHCCCHH-----HHHHH---HHhchh--hHHHHHHHHH------HHccCcHHHHHHHHHHHHHHHhc
Confidence 46788887787777665432 12222 222221 1111122222 222 5778888888888888877
Q ss_pred CCcccccchhhhHH----HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC
Q 009433 245 PHIHIEPYLHQMMP----SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS 320 (535)
Q Consensus 245 p~L~IepYLHqLlP----svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~ 320 (535)
.. .....++.+-. ...+..+. .+ ..++|.+...|+.+|+.++...+..-......++..|.+.+.+-.++
T Consensus 88 ~~-~~~~~~~~~~~~~~~~~~~~fl~-ll----~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~ 161 (312)
T PF03224_consen 88 DP-SRVELFLELAKQDDSDPYSPFLK-LL----DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSS 161 (312)
T ss_dssp SS-SSHHHHHHHHH-TTH--HHHHHH-H-----S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-H
T ss_pred CH-HHHHHHHHhcccccchhHHHHHH-Hh----cCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcC
Confidence 66 33333333221 11122221 11 13478999999999999998766554443345566666665542222
Q ss_pred --chhhhhHHHHHHhh-ChhhhHhhcc
Q 009433 321 --LSQHYGAIQGLAAL-GPSVVHLLIL 344 (535)
Q Consensus 321 --l~t~YGAI~GL~aL-G~~aVr~lll 344 (535)
....+.|+.+|..| ..+..|..++
T Consensus 162 ~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 162 SDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 23348999999997 6677776553
No 111
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=49.87 E-value=1.1e+02 Score=36.38 Aligned_cols=204 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHH---------------------ccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccC
Q 009433 168 LSKELQLYFDKIRELT---------------------VSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLK 226 (535)
Q Consensus 168 LSkElQ~Yf~kIt~al---------------------l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~ 226 (535)
|+.|-..||.++..-. +.+..+..|+.||..|....-=..-=|-|=+.+-=- +...|.
T Consensus 335 lkpeD~~yf~~ll~d~~e~~L~~~e~kEr~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpll-Ms~tLe 413 (1172)
T KOG0213|consen 335 LKPEDLQYFADLLKDFDEPLLEDEEGKERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLL-MSPTLE 413 (1172)
T ss_pred CChhhHHHHHHHHhhcChhhcCcccccHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHH-cCcccc
Q ss_pred ChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCC--------------------------CCCcchHH
Q 009433 227 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNR--------------------------FSDNHWDL 280 (535)
Q Consensus 227 nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~--------------------------~~~~hw~L 280 (535)
|-+.=. +.+++..+|--=.--.-||+|.++=.+=..++-...-.+ ..+..=.+
T Consensus 414 Dqerhl-lVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYV 492 (1172)
T KOG0213|consen 414 DQERHL-LVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYV 492 (1172)
T ss_pred chhhhh-HHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHH
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhh
Q 009433 281 RNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLL 360 (535)
Q Consensus 281 Rd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~ 360 (535)
|.-.|+..+-++..+|- --..-|++++-...|+...+--.|.....++--.=+. ++|||+...+-|+..+.+
T Consensus 493 Rnttarafavvasalgi-------p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~D 564 (1172)
T KOG0213|consen 493 RNTTARAFAVVASALGI-------PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKD 564 (1172)
T ss_pred HHHHHHHHHHHHHHhCc-------HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcc
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHhh
Q 009433 361 EKQKNEMKRHEAWRVYGALQCAAG 384 (535)
Q Consensus 361 ~~~~~~~~r~ea~~v~~aLl~a~g 384 (535)
+.+ -+|..+.-...||-.|++
T Consensus 565 e~q---kVR~itAlalsalaeaa~ 585 (1172)
T KOG0213|consen 565 EQQ---KVRTITALALSALAEAAT 585 (1172)
T ss_pred cch---hhhhHHHHHHHHHHHhcC
No 112
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=49.61 E-value=29 Score=34.98 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=57.3
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 4 VPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 4 ~~~e~V~~iAes-~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
+|.+-||.+.+. -|+.-++.||--..|.-.|-.|.|+.-.|--.++..||++|.-.||-.|++...+
T Consensus 110 LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeM 177 (286)
T COG5208 110 LPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEM 177 (286)
T ss_pred CcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Confidence 677777777653 3455578888888999999999999999999999999999999999999987765
No 113
>PRK09087 hypothetical protein; Validated
Probab=48.98 E-value=81 Score=31.41 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccCHhhHHHHhhcc
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA--HRTVLTANDVDSALNLR 68 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrhs--kR~~Lt~~DI~~AL~~~ 68 (535)
-++..++..|+ .+++|+...|++..+-.++.+..-..+.-+.+ ..+++|...++.+|+..
T Consensus 161 iL~~~~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 161 VIFKLFADRQL-YVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 46677778899 59999999999999988888887444443333 33569999999999764
No 114
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=46.93 E-value=73 Score=31.56 Aligned_cols=58 Identities=7% Similarity=-0.019 Sum_probs=46.5
Q ss_pred HHHHcCC---CCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccC
Q 009433 12 IAQSIGV---YNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (535)
Q Consensus 12 iAes~Gi---~~lsdeaa~~La~dve---yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~n 69 (535)
.++..|. ..+++++++.|++... ..|..++..|...+-..+.+.++.+||+.|++..+
T Consensus 204 ~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 204 RLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 3445564 3689999999998776 46888888888887777888999999999998765
No 115
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=46.78 E-value=2.2e+02 Score=27.03 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=53.0
Q ss_pred cCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHH
Q 009433 202 DSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLR 281 (535)
Q Consensus 202 D~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LR 281 (535)
..-+.+.+|++..-+.++ +...=...+.++.-|+.|..+.....+ +.-++.|+ .|....+|
T Consensus 20 ~~~ve~~~~~l~~~L~D~-------~~~VR~~al~~Ls~Li~~d~ik~k~~l---~~~~l~~l---------~D~~~~Ir 80 (178)
T PF12717_consen 20 PNLVEPYLPNLYKCLRDE-------DPLVRKTALLVLSHLILEDMIKVKGQL---FSRILKLL---------VDENPEIR 80 (178)
T ss_pred cHHHHhHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHcCceeehhhh---hHHHHHHH---------cCCCHHHH
Confidence 333556666666666665 333333456777888899888887655 33455565 36677999
Q ss_pred HHHHHHHHHHHHH-hCC
Q 009433 282 NFVADLIASICTR-FGH 297 (535)
Q Consensus 282 d~AA~lL~~I~~~-~~~ 297 (535)
+.|..++..+..+ +++
T Consensus 81 ~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPN 97 (178)
T ss_pred HHHHHHHHHHHHhccch
Confidence 9999999999998 444
No 116
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=46.56 E-value=81 Score=38.05 Aligned_cols=142 Identities=18% Similarity=0.236 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHccC------CchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCC
Q 009433 173 QLYFDKIRELTVSR------SNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPH 246 (535)
Q Consensus 173 Q~Yf~kIt~all~~------~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~ 246 (535)
|.||-.|.-.++.+ +.++..-+||..+=++--.++++|.+-...--=+-+-.+-|...-...++.+.-++.=-+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 77998888777642 334556688877555655588777765443211001122233332223445555555555
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCC
Q 009433 247 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKS 320 (535)
Q Consensus 247 L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tL~k~lldp~k~ 320 (535)
=-+..|+.-++|.+++. ++ ...+|--..|..|=++|..+.++--+.| ..-|+.|++.+.|.|-||++-
T Consensus 942 tL~t~~~~Tlvp~lLsl--s~----~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRl 1010 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSL--SS----DNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRL 1010 (1030)
T ss_pred ccchHHHhHHHHHHHhc--CC----CCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHH
Confidence 55678888899987654 22 2223357899999999999998433322 234788999999999888753
No 117
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription]
Probab=45.69 E-value=70 Score=32.24 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=54.4
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccC
Q 009433 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (535)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~n 69 (535)
.||+.-||.|-++= .|..+...+=-.+...+|..+..|++.+.+..+--.-++|+++++.+|...-+
T Consensus 13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~ 80 (224)
T KOG1659|consen 13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDP 80 (224)
T ss_pred cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccc
Confidence 57888888887652 22235556666788999999999999999999999999999999999987543
No 118
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=45.46 E-value=52 Score=35.55 Aligned_cols=105 Identities=14% Similarity=0.269 Sum_probs=63.7
Q ss_pred cchHHHHHHHHHHHHHHHHhCCCchhHH-HHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhh------hH--hhcccc
Q 009433 276 NHWDLRNFVADLIASICTRFGHVYQNLQ-SRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV------VH--LLILPN 346 (535)
Q Consensus 276 ~hw~LRd~AA~lL~~I~~~~~~~y~~L~-~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~a------Vr--~lllP~ 346 (535)
|.-.-|.-|.++|..+|++|+.....+- .-|...|.+.=.+|....-..-||+.-+.++.... |. ..+++.
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 3456788899999999999987544333 33444444333488888899999999888874432 11 234455
Q ss_pred hHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009433 347 LELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 380 (535)
Q Consensus 347 L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl 380 (535)
..-|...+.|+|.+........|.+|-++.-..-
T Consensus 303 ~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr 336 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDVNSHPILKADAIKFLYTFR 336 (370)
T ss_dssp HHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHH
Confidence 5556677888887333445667888877665443
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.33 E-value=45 Score=35.18 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
.++.+|+.-|+ .++++++..|+.-....++.++.+.-|..-.+..+ +|.+||+..+.
T Consensus 175 ~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 175 HLAGIAVKEGI-KFEDDALHIIAQKADGALRDALSIFDRVVTFCGKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHhC
Confidence 46777888999 49999999999999888999988888887776655 99999887764
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=44.84 E-value=77 Score=25.56 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009433 275 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 337 (535)
Q Consensus 275 ~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 337 (535)
+..|.+|..|+.+|+.+ + .+++...|.+.+.| .......=|+..|..+|.+
T Consensus 11 ~~~~~vr~~a~~~L~~~----~------~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 11 DPDPQVRAEAARALGEL----G------DPEAIPALIELLKD--EDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp SSSHHHHHHHHHHHHCC----T------HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHHH
T ss_pred CCCHHHHHHHHHHHHHc----C------CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Confidence 56789999999999933 2 24678888888754 5568889999999999863
No 121
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=44.71 E-value=2.5e+02 Score=33.47 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=85.8
Q ss_pred ccCCcccccchhhhhhhchhhhcccCChHHHHHHH-HHHHHhhcCCCcccccchhhhHHHHHHHHhcc------------
Q 009433 201 MDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALM-RVARSLLRNPHIHIEPYLHQMMPSVITCLVSK------------ 267 (535)
Q Consensus 201 tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lm-rmv~ALl~Np~L~IepYLHqLlPsvLTCll~k------------ 267 (535)
.+.++..++|-++....++ . ......+. ..-.....|...-++-+..+++|.+. |+...
T Consensus 431 k~~ti~~llp~~~~~l~de-~------~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~-el~~d~~wRvr~ail~~ 502 (759)
T KOG0211|consen 431 KERTISELLPLLIGNLKDE-D------PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV-ELAEDLLWRVRLAILEY 502 (759)
T ss_pred cCcCccccChhhhhhcchh-h------HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh-hhccchhHHHHHHHHHH
Confidence 5556666666666555554 1 11111122 11344455666677777777777433 32221
Q ss_pred ------ccCCC-------------CCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCC-CCCchhhhhH
Q 009433 268 ------RLGNR-------------FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDP-TKSLSQHYGA 327 (535)
Q Consensus 268 ------~l~~~-------------~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp-~k~l~t~YGA 327 (535)
++|-. ..+.-.++|+.||+.+..++.+||..+.. ..++..++....++ =+.-.|.+=+
T Consensus 503 ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~--~~~i~k~L~~~~q~~y~~R~t~l~s 580 (759)
T KOG0211|consen 503 IPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR--LEEIPKLLAMDLQDNYLVRMTTLFS 580 (759)
T ss_pred HHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH--HHhhHHHHHHhcCcccchhhHHHHH
Confidence 11211 12345689999999999999999977764 45666666666666 3456677778
Q ss_pred HHHHHh-hChhhhHhhcccchHHH
Q 009433 328 IQGLAA-LGPSVVHLLILPNLELY 350 (535)
Q Consensus 328 I~GL~a-LG~~aVr~lllP~L~~y 350 (535)
|.-|.. +|.+.....++|-+...
T Consensus 581 i~~la~v~g~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 581 IHELAEVLGQEITCEDLLPVFLDL 604 (759)
T ss_pred HHHHHHHhccHHHHHHHhHHHHHh
Confidence 877776 48898888888855443
No 122
>PTZ00429 beta-adaptin; Provisional
Probab=43.79 E-value=3.4e+02 Score=32.29 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=53.4
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhh
Q 009433 247 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYG 326 (535)
Q Consensus 247 L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YG 326 (535)
|.+...+-.++++|..|+. +.+=.+|..||-.+.+|.+.+....+ ..++...|.+.+. ++.....+.
T Consensus 132 Ir~~~i~e~l~~~lkk~L~---------D~~pYVRKtAalai~Kly~~~pelv~--~~~~~~~L~~LL~--D~dp~Vv~n 198 (746)
T PTZ00429 132 IRVSSVLEYTLEPLRRAVA---------DPDPYVRKTAAMGLGKLFHDDMQLFY--QQDFKKDLVELLN--DNNPVVASN 198 (746)
T ss_pred CCcHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHhhCccccc--ccchHHHHHHHhc--CCCccHHHH
Confidence 4556666677788888873 44559999999999999987665432 1234444555444 577888899
Q ss_pred HHHHHHhhC
Q 009433 327 AIQGLAALG 335 (535)
Q Consensus 327 AI~GL~aLG 335 (535)
|+..|.++.
T Consensus 199 Al~aL~eI~ 207 (746)
T PTZ00429 199 AAAIVCEVN 207 (746)
T ss_pred HHHHHHHHH
Confidence 999888884
No 123
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.58 E-value=98 Score=38.19 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHccCCchHHHHH----HH-------HhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHH
Q 009433 170 KELQLYFDKIRELTVSRSNSTVFKQ----AL-------LSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVA 238 (535)
Q Consensus 170 kElQ~Yf~kIt~all~~~~~~~r~~----AL-------~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv 238 (535)
.-++.|+..|.+.++|. +..... |+ ...-+|+-+.+++-..+-||++. +-.+...-+.++
T Consensus 781 ~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~-------sreI~kaAI~fi 851 (1176)
T KOG1248|consen 781 AILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN-------SREIAKAAIGFI 851 (1176)
T ss_pred HHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHH
Confidence 34677888888887752 222221 22 22344555566655555555544 333444445555
Q ss_pred HHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc
Q 009433 239 RSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY 299 (535)
Q Consensus 239 ~ALl-~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y 299 (535)
..++ .=|-..+-+|+.+|||+++.- .+ +---.+|-..-.||..+|++||..+
T Consensus 852 kvlv~~~pe~~l~~~~~~LL~sll~l--s~-------d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 852 KVLVYKFPEECLSPHLEELLPSLLAL--SH-------DHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHcCCHHHHhhhHHHHHHHHHHH--HH-------hhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 5554 346678899999999998873 22 1223789999999999999999543
No 124
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=42.65 E-value=2.8e+02 Score=29.16 Aligned_cols=98 Identities=13% Similarity=0.229 Sum_probs=62.2
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhcCCCCCchhhh
Q 009433 248 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG--HVYQNLQSRVTRTLLHAFLDPTKSLSQHY 325 (535)
Q Consensus 248 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~--~~y~~L~~RI~~tL~k~lldp~k~l~t~Y 325 (535)
+++.+...|+..++.|+ |+ |.. .=+..|+++++.+|-+.| ..-..+...+...|.+++.|...+...+=
T Consensus 79 ~v~~~~~tL~~~~~k~l--kk-g~~------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~ 149 (309)
T PF05004_consen 79 FVEDRRETLLDALLKSL--KK-GKS------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARA 149 (309)
T ss_pred HHHHHHHHHHHHHHHHh--cc-CCH------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 45555666777777776 22 111 237789999999999966 66778888999999999999877765533
Q ss_pred hHHHHH------HhhChhhhHhhcccchHHHHHhhh
Q 009433 326 GAIQGL------AALGPSVVHLLILPNLELYLKFLE 355 (535)
Q Consensus 326 GAI~GL------~aLG~~aVr~lllP~L~~y~~~Le 355 (535)
.++.+| ..-+.+.+.. ++..+..+|....
T Consensus 150 ~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~ 184 (309)
T PF05004_consen 150 ACLEALAICTFVGGSDEEETEE-LMESLESIFLLSI 184 (309)
T ss_pred HHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHh
Confidence 333222 2223344442 3455665555443
No 125
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=42.42 E-value=22 Score=34.07 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccC
Q 009433 1 MSIVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~n 69 (535)
|+.+|...|+.+-+.= .++-+.+++.+.++.-+|-.++++-..+-.+...+||+++..-|++.|...-+
T Consensus 57 l~rLpL~rik~vvkl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~d 126 (162)
T KOG1658|consen 57 LSRLPLARIKQVVKLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVD 126 (162)
T ss_pred hhhccHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchH
Confidence 4566777777665532 23336789999999999999999999999999999999999999999986643
No 126
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.24 E-value=38 Score=36.06 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
.++.+++..|+ .++++++..++....-.+|.++...-+....+ +..+|.+||..++.....
T Consensus 186 ~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~-~~~It~~~v~~~l~~~~~ 246 (363)
T PRK14961 186 FLKYILIKESI-DTDEYALKLIAYHAHGSMRDALNLLEHAINLG-KGNINIKNVTDMLGLLNE 246 (363)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCCH
Confidence 45667778898 59999999999988877887777776666554 678999999998855433
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=41.81 E-value=27 Score=26.39 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=29.6
Q ss_pred hhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHH
Q 009433 241 LLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASI 291 (535)
Q Consensus 241 Ll~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I 291 (535)
|..+..-.+++|+.+++|.++.++ .|++-.+|..|+..|+.|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L---------~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLL---------QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHT---------TSSSHHHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcC
Confidence 334445567888888888887665 133339999999988765
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=41.58 E-value=54 Score=37.74 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
+.++.+++.-|+ .++++++..|+.-.+..+|.++++.-|.+.++ ..++|.+||...+
T Consensus 198 ~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g-~g~It~e~V~~ll 254 (598)
T PRK09111 198 AHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLSLLDQAIAHG-AGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCcCHHHHHHHh
Confidence 456778888899 49999999999999999999999988888886 4679999999776
No 129
>PRK06620 hypothetical protein; Validated
Probab=41.12 E-value=65 Score=31.82 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrh--skR~~Lt~~DI~~AL~ 66 (535)
-++..++.-|+ .+++|++..|++..+-.+|++..---+.-++ ..++.+|.+.++.+|+
T Consensus 155 ~l~k~~~~~~l-~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l~ 214 (214)
T PRK06620 155 LIFKHFSISSV-TISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214 (214)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 45667777888 5999999999999987777776654443322 2334689998888764
No 130
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=40.35 E-value=1.2e+02 Score=29.26 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHhhcCCC---ccc--ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc
Q 009433 227 NFSLLFALMRVARSLLRNPH---IHI--EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY 299 (535)
Q Consensus 227 nl~~L~~Lmrmv~ALl~Np~---L~I--epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y 299 (535)
|-..-...++.+..++.+-. -.+ ...+.++++.+..|+- |..=.+|+.|-+++..+.+.|+..-
T Consensus 144 n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~---------D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 144 NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS---------DADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT---------SS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 44443445555555555444 333 3345788888888863 3344899999999999998887643
No 131
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=40.10 E-value=71 Score=39.99 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhh--hHHHHHHhhChhhhHhhcccchHHHHHhh
Q 009433 278 WDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHY--GAIQGLAALGPSVVHLLILPNLELYLKFL 354 (535)
Q Consensus 278 w~LRd~AA~lL~~I~~~~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~Y--GAI~GL~aLG~~aVr~lllP~L~~y~~~L 354 (535)
..+||-|-+++++|++--|..|- .+-+-+--|+.+.+.=-...++.|| ||+.+...-|. ...++=|.+..+.+.+
T Consensus 578 ~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl~rg~q~hvl~~tvh~ll~a~~~v~~~g~--Ld~~~~~~i~i~~e~~ 655 (1364)
T KOG1823|consen 578 AELRDASRKTLAKIIKILGPKYLYFVIKELQTTLKRGFQVHVLSYTVHYLLGAMKNVLKAGS--LDTCLDPIIKIFNENL 655 (1364)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccc--HHHHHHHHHHHHHHHH
Confidence 48999999999999997777663 4556677777777776666777777 66666666564 4445556777777777
Q ss_pred hhhhhhHh
Q 009433 355 EPEMLLEK 362 (535)
Q Consensus 355 e~~l~~~~ 362 (535)
--+...++
T Consensus 656 fg~v~~ek 663 (1364)
T KOG1823|consen 656 FGEVGKEK 663 (1364)
T ss_pred HHHHhhhh
Confidence 65555443
No 132
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=39.85 E-value=1.4e+02 Score=28.93 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA------------------------------- 51 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrhs------------------------------- 51 (535)
.+|..-+.-..+..|+.-.+..+.+.|+-.....+..|.++|-++-|-.
T Consensus 88 liPd~v~DYyl~k~Gf~~~D~rvKkLl~L~aqKFvsDiA~dayqYsrIr~~~sna~~t~~~a~~f~~gg~~~i~~~~~~~ 167 (197)
T COG5162 88 LIPDSVTDYYLEKAGFVTSDQRVKKLLSLLAQKFVSDIAVDAYQYSRIRQGSSNAKATAQKAKRFAKGGASGIGSSGRRG 167 (197)
T ss_pred CccHHHHHHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHhccccccccccccc
Confidence 4566666777899999766668888888888777888877776654421
Q ss_pred --CCCccCHhhHHHHhhccCC
Q 009433 52 --HRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 52 --kR~~Lt~~DI~~AL~~~nv 70 (535)
+..+||..|+..||...++
T Consensus 168 dr~K~vltv~DLs~Al~EyGi 188 (197)
T COG5162 168 DRKKPVLTVVDLSKALEEYGI 188 (197)
T ss_pred ccCCceeeehHHHHHHHHhcc
Confidence 3446888888888876544
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=39.43 E-value=70 Score=32.44 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+.++.+++..|+ .++++++..|++...-.+|.++.+.-+.... ..++|.+||..++.
T Consensus 168 ~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~--~~~it~~~v~~~~~ 224 (319)
T PRK00440 168 ERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAINALQAAAAT--GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHhC
Confidence 346777788898 5999999999998887888888777776654 36899999998873
No 134
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=39.36 E-value=1.5e+02 Score=30.99 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=61.4
Q ss_pred hhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH
Q 009433 215 FISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT 293 (535)
Q Consensus 215 FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~ 293 (535)
|+.++ +-.-+.+-+-+.-++|..++++.+-.-.+..- ...+--++++|+++..+ .|..|..|.+.|..++.
T Consensus 164 ll~~k-vyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~-------~~~vR~~A~~~l~~l~~ 235 (339)
T PF12074_consen 164 LLSEK-VYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV-------SWKVRRAALSALKKLYA 235 (339)
T ss_pred hcCHH-HHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHH
Confidence 34455 32223455666778888899988766544333 25555678888876533 57999999999999999
Q ss_pred HhCCCchhHHHHHHHHHHHHhcC
Q 009433 294 RFGHVYQNLQSRVTRTLLHAFLD 316 (535)
Q Consensus 294 ~~~~~y~~L~~RI~~tL~k~lld 316 (535)
+.... +..-|+..+.+.+.+
T Consensus 236 ~~~~~---l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 236 SNPEL---LSKSLISGLWKWLSS 255 (339)
T ss_pred hChHH---HHHHHHHHHHHHHHh
Confidence 87653 555566666666653
No 135
>PRK08727 hypothetical protein; Validated
Probab=38.62 E-value=85 Score=31.20 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=41.3
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREI---MQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrireI---iqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
++..|+.-|+ .+++++...|++..+-.++.+ ++.....+...+| ++|.+.+...|..
T Consensus 171 L~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 171 LRERAQRRGL-ALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHhh
Confidence 4444555688 699999999999988445544 7666655555555 7999999988753
No 136
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=38.45 E-value=2.3e+02 Score=34.46 Aligned_cols=118 Identities=21% Similarity=0.175 Sum_probs=81.6
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc----CCCC-
Q 009433 245 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL----DPTK- 319 (535)
Q Consensus 245 p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~ll----dp~k- 319 (535)
|.=-+-|.+..|+|-+|.|+=-. ....|--+-+++.......+ +|++-=..|+...|+ |++.
T Consensus 899 P~~vllp~~~~LlPLLLq~Ls~~---------D~~v~vstl~~i~~~l~~~~----tL~t~~~~Tlvp~lLsls~~~~n~ 965 (1030)
T KOG1967|consen 899 PKQVLLPQFPMLLPLLLQALSMP---------DVIVRVSTLRTIPMLLTESE----TLQTEHLSTLVPYLLSLSSDNDNN 965 (1030)
T ss_pred CHHhhccchhhHHHHHHHhcCCC---------ccchhhhHhhhhhHHHHhcc----ccchHHHhHHHHHHHhcCCCCCcc
Confidence 33366788888899888886222 22456666677777776655 355554555554444 4443
Q ss_pred CchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHH
Q 009433 320 SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGA 378 (535)
Q Consensus 320 ~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~a 378 (535)
+-..+--|+.||.+|-...=-..++|.-+.....|.+-+.+- .+.+|.||.++.+.
T Consensus 966 ~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 966 MMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDTRQN 1021 (1030)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHHhhh
Confidence 366788999999998775545568899899999999998753 47889999888775
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.14 E-value=67 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
+.++.+++..|+ .++++++..|++-.+-.+|.+++..-+.+..+ ..++|.+||..++
T Consensus 185 ~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~Ldkl~~~~-~~~It~~~V~~~l 241 (486)
T PRK14953 185 EYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLLDQASTYG-EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHh
Confidence 366778888998 59999999999999988999998888877665 5579999999887
No 138
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.01 E-value=70 Score=34.53 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH----AHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrh----skR~~Lt~~DI~~AL~ 66 (535)
.++.+++.-|+ .++++++..|++.+.-.++.++.+.-|.... ..++++|.+||..++.
T Consensus 194 ~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 194 QLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHC
Confidence 55667777788 4999999999999999899998888876655 3567999999988873
No 139
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=37.51 E-value=1.7e+02 Score=28.50 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=72.9
Q ss_pred cccchhhhHHHHHHHHhcc-------ccCCC--CCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCC
Q 009433 249 IEPYLHQMMPSVITCLVSK-------RLGNR--FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK 319 (535)
Q Consensus 249 IepYLHqLlPsvLTCll~k-------~l~~~--~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k 319 (535)
|-|++.+++|.++.=...+ .+|+= ..|+-.++|..|=.+|..+...+..... -.-+.......|.| ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 4577888899877554433 13431 2689999999999999999997655443 23456666777777 33
Q ss_pred Cch-hhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHh
Q 009433 320 SLS-QHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAA 383 (535)
Q Consensus 320 ~l~-t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~ 383 (535)
.+. --|.-+.=|..+.|..+.. +|..+.+.++..+. .+.+...++.|.+|...+.-.++
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~-~k~k~~AvkQE~Ek~~E~~rs~l 139 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLS-KKLKENAVKQEIEKQQELIRSVL 139 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH-----TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhh-ccCCCCcccccHHHHHHHHHHHH
Confidence 322 2355555666777766655 45555555555554 23333444555555555444443
No 140
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=35.33 E-value=1.3e+02 Score=31.66 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 20 NLSSDVALALAPDVEY------RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 20 ~lsdeaa~~La~dvey------rireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
.+++++++.+++.+.. ++.+++..|...+....+.+++.+||..|+...
T Consensus 228 ~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 228 VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 5899999999888843 244777888888888888999999999999866
No 141
>PRK08084 DNA replication initiation factor; Provisional
Probab=35.15 E-value=1.2e+02 Score=30.13 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHhh
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALN 66 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrh--skR~~Lt~~DI~~AL~ 66 (535)
++..|+.-|+ .+++|++..|+...+-.+|++..---++.+. ++.+++|.+.+..+|.
T Consensus 176 l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 176 LQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 4444555788 5999999999999997777776655555444 2335699999888875
No 142
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=34.00 E-value=3e+02 Score=30.06 Aligned_cols=136 Identities=19% Similarity=0.246 Sum_probs=78.1
Q ss_pred HHHHHHHHHccCCchHHHHHHHHhhh-ccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccc--c
Q 009433 175 YFDKIRELTVSRSNSTVFKQALLSLA-MDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIE--P 251 (535)
Q Consensus 175 Yf~kIt~all~~~~~~~r~~AL~sL~-tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~Ie--p 251 (535)
++++|.+ ++-+++....+..|. ..++.++++-|+-+|+.+. . -++.+.++|+..+.+.=+ .
T Consensus 81 ~~erILe----d~aDeKl~~l~~~Lk~~~~~~~~ll~~arq~FpD~---------S---Dl~~aLreLl~r~kL~~~~~~ 144 (372)
T PRK15338 81 SFERVLE----DEALPKAKQILKLISVHGGALEEFLRQARKLFPDP---------S---DLVLVLRELLRRKQLEEIVRK 144 (372)
T ss_pred HHHHHhc----cchHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCH---------H---HHHHHHHHHHhCccCCHHHHH
Confidence 6777553 333344555667777 6778999999999999876 1 133455666665554310 0
Q ss_pred chhhh------------HHHHHHHH-hccccCCCCCCcchHHHHHHH----------HHHHHHHHHhCCCchhHHHHHHH
Q 009433 252 YLHQM------------MPSVITCL-VSKRLGNRFSDNHWDLRNFVA----------DLIASICTRFGHVYQNLQSRVTR 308 (535)
Q Consensus 252 YLHqL------------lPsvLTCl-l~k~l~~~~~~~hw~LRd~AA----------~lL~~I~~~~~~~y~~L~~RI~~ 308 (535)
-+.++ +-+-++|. .+|.++....-+-+.||+.=- .+-..++.+||.. =+.+|++
T Consensus 145 ~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~lYR~Fl~~d~~~~~iY~~Wieeyg~~---~R~~il~ 221 (372)
T PRK15338 145 KLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLRASYRQFLQSESHEVEIYSDWIASYGYQ---RRLVVLD 221 (372)
T ss_pred HHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCcHHHHHHHHHHHhCcc---HHHHHHH
Confidence 00000 11222332 223333322345578887533 3446677788753 2678888
Q ss_pred HHHHHhc------CCCCCchhhhhHHHH
Q 009433 309 TLLHAFL------DPTKSLSQHYGAIQG 330 (535)
Q Consensus 309 tL~k~ll------dp~k~l~t~YGAI~G 330 (535)
.+.++|. +|+++ ..++|.+.+
T Consensus 222 Fl~~AL~~DlqS~~Ps~~-~~EFG~l~~ 248 (372)
T PRK15338 222 FIEGSLLTDIDANDASCS-RLEFGQLLR 248 (372)
T ss_pred HHHHHHHhHHhcCCCCCC-HHHHHHHHH
Confidence 8888875 46555 578888877
No 143
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=33.99 E-value=1e+02 Score=31.62 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT 54 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~ 54 (535)
-|..+.+-+|. +++.|-...-|+.+|.+++++.+...+-++|-+|+
T Consensus 192 vve~lnk~~~l-~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~~ 237 (244)
T COG1938 192 VVEALNKMLGL-NVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVERE 237 (244)
T ss_pred HHHHHHHHhcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 36778888999 79999999999999999999999999999986654
No 144
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.84 E-value=4.7e+02 Score=31.35 Aligned_cols=134 Identities=22% Similarity=0.235 Sum_probs=85.9
Q ss_pred ccchhhhhhhchhhhcccCChHHHHH-HHHHHHHhhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009433 208 LVPYFTYFISEEVVTRSLKNFSLLFA-LMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 285 (535)
Q Consensus 208 LLPYfv~FI~e~vV~~nl~nl~~L~~-Lmrmv~ALl~Np~L-~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 285 (535)
++|...-||-+. ++. .|+..-.. .| ..-+.+.=|.- .+-|+++|.+|+++.-+..+. .-.||-+|
T Consensus 361 Iv~~Vl~Fiee~-i~~--pdwr~reaavm-AFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s---------l~VkdTaA 427 (859)
T KOG1241|consen 361 IVPHVLPFIEEN-IQN--PDWRNREAAVM-AFGSILEGPEPDKLTPIVIQALPSIINLMSDPS---------LWVKDTAA 427 (859)
T ss_pred chhhhHHHHHHh-cCC--cchhhhhHHHH-HHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch---------hhhcchHH
Confidence 667777777666 443 13332222 33 33455666654 889999999999998764332 24469999
Q ss_pred HHHHHHHHHhCC--CchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhh-----cccchHHHHHhh
Q 009433 286 DLIASICTRFGH--VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLL-----ILPNLELYLKFL 354 (535)
Q Consensus 286 ~lL~~I~~~~~~--~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~l-----llP~L~~y~~~L 354 (535)
-.+++||+-... ....+-+-+...|.+-|.|.-+--..-=+|+.||+.=-.++.+.- .-|....+...|
T Consensus 428 wtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~L 503 (859)
T KOG1241|consen 428 WTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSL 503 (859)
T ss_pred HHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHH
Confidence 999999974321 112344556777888888887777788899999986555544432 335555555444
No 145
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.53 E-value=1.3e+02 Score=38.27 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=68.5
Q ss_pred ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 208 LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 208 LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl-~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
+.|-|++-+... +.++. +...-...+.++++.+ .|.+++-+.-...+-- ++-|++ .|++-+.|+.||.
T Consensus 1523 l~~e~l~~l~~~-~~~~~-tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~-l~~s~l--------~D~~i~vre~Aa~ 1591 (1710)
T KOG1851|consen 1523 LQPEFLRDLKML-TADSS-TWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRK-LLESLL--------NDDQIEVREEAAK 1591 (1710)
T ss_pred hHHHHHHHHHHH-hcccc-hHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH-HHHHHH--------cchHHHHHHHHHH
Confidence 445566555432 33322 3333334566666654 3333333333333333 222222 3566789999999
Q ss_pred HHHHHHH-HhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 287 LIASICT-RFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 287 lL~~I~~-~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
+|+.+.+ .|....+ +..+++.+.+..+.++.....||+.||+|+
T Consensus 1592 ~Lsgl~~~s~~~~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~ 1636 (1710)
T KOG1851|consen 1592 CLSGLLQGSKFQFVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAI 1636 (1710)
T ss_pred HHHHHHhccccccch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHH
Confidence 9977764 4444443 777888888888888999999999999997
No 146
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.51 E-value=1e+02 Score=34.46 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.++.+++.-|+ .++++++..|++-..--+|.++..--+....+. .++|.+||..++..
T Consensus 184 ~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 184 RLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVWKFSE-GKITLETVHEALGL 241 (472)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHcC
Confidence 45677777888 599999999999877777776666655554443 34999999998844
No 147
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=33.12 E-value=1.8e+02 Score=27.97 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEY---RVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dvey---rireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
++..++..|+ .+++++.+.|+..... .++++++++-.+++..++ +++.+.++..|+
T Consensus 168 l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~~ 226 (226)
T TIGR03420 168 LQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKR-KITIPFVKEVLA 226 (226)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC
Confidence 3445556788 5999999999997653 367777888887777664 699999988764
No 148
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=1.2e+02 Score=35.29 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=51.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYR-------------VREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyr-------------ireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
++.+++.-++..++.+|+..|....+.+ +..++++|.-+++--.|+.++++||..|++..
T Consensus 327 ~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 327 VQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhh
Confidence 4556667789999999999999888753 67899999999999899999999999999884
No 149
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.82 E-value=77 Score=36.72 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA----HRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrhs----kR~~Lt~~DI~~AL~ 66 (535)
.++.+++.-|+ .++++++..|++-+.-.++.++.+.-|.+-.+ .++.+|.+||...+.
T Consensus 194 ~L~~i~~~egi-~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 194 QLQMICRAEGI-QIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 56677778898 49999999999999999999999988888775 377899999987763
No 150
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.77 E-value=1e+02 Score=34.77 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccCHhhHHHHhhc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH--RTVLTANDVDSALNL 67 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrhsk--R~~Lt~~DI~~AL~~ 67 (535)
+.++.+++.-|+ .++++++..|++..+--+|.++++--|...++. +.++|.+||+..+..
T Consensus 194 ~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~ 255 (507)
T PRK06645 194 KLLEYITKQENL-KTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGL 255 (507)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCC
Confidence 356778888898 489999999999998889988888888766653 457999999988744
No 151
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=31.27 E-value=2e+02 Score=31.45 Aligned_cols=169 Identities=24% Similarity=0.320 Sum_probs=90.8
Q ss_pred CcHHHHHH--HHHHHHHHccCCch------HHHHHHHHhhhccCCccc-----ccchhhhhhhchhhhcccCChHHHHHH
Q 009433 168 LSKELQLY--FDKIRELTVSRSNS------TVFKQALLSLAMDSGLHP-----LVPYFTYFISEEVVTRSLKNFSLLFAL 234 (535)
Q Consensus 168 LSkElQ~Y--f~kIt~all~~~~~------~~r~~AL~sL~tD~gL~q-----LLPYfv~FI~e~vV~~nl~nl~~L~~L 234 (535)
.+.|+|.| |-++|..+.+.+-+ ..|+.+ -|-++.|-|++ .+|+|+.|.-+ ..+ ++..+
T Consensus 63 i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~-LS~E~~PPIq~VIdaGvVpRfvefm~~--~q~---~mlqf--- 133 (526)
T COG5064 63 IPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKL-LSKETSPPIQPVIDAGVVPRFVEFMDE--IQR---DMLQF--- 133 (526)
T ss_pred CchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH-hccccCCCchhHHhccccHHHHHHHHh--cch---hHHHH---
Confidence 55666644 34556666542211 123333 35678888886 57999999854 233 32222
Q ss_pred HHHHHHhhc-------CCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH-HhCCCchhHHHHH
Q 009433 235 MRVARSLLR-------NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT-RFGHVYQNLQSRV 306 (535)
Q Consensus 235 mrmv~ALl~-------Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~-~~~~~y~~L~~RI 306 (535)
..++||.. -.++-++- --+|-++..+.+. .-++|+.|-=-|+.|.- .-+-...-|+.-.
T Consensus 134 -EAaWalTNiaSGtt~QTkvVvd~---~AVPlfiqlL~s~---------~~~V~eQavWALGNiAGDS~~~RD~vL~~ga 200 (526)
T COG5064 134 -EAAWALTNIASGTTQQTKVVVDA---GAVPLFIQLLSST---------EDDVREQAVWALGNIAGDSEGCRDYVLQCGA 200 (526)
T ss_pred -HHHHHHhhhccCcccceEEEEeC---CchHHHHHHHcCc---------hHHHHHHHHHHhccccCCchhHHHHHHhcCc
Confidence 34455432 11222221 2345444444332 12566666666666542 0111112355556
Q ss_pred HHHHHHHhcCCCCCchhhhhHHHHHHhh--Ch------hhhHhhcccchHHHHHhhhhhhh
Q 009433 307 TRTLLHAFLDPTKSLSQHYGAIQGLAAL--GP------SVVHLLILPNLELYLKFLEPEML 359 (535)
Q Consensus 307 ~~tL~k~lldp~k~l~t~YGAI~GL~aL--G~------~aVr~lllP~L~~y~~~Le~~l~ 359 (535)
+..++..|......+...--|-+.|+.| |. ..++. .+|-|..+.-..+++..
T Consensus 201 leplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq-alpiL~KLiys~D~evl 260 (526)
T COG5064 201 LEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ-ALPILAKLIYSRDPEVL 260 (526)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH-HHHHHHHHHhhcCHHHH
Confidence 6777777775555577777888889888 43 35554 56777666666666543
No 152
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.63 E-value=4.8e+02 Score=31.45 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009433 275 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 275 ~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 336 (535)
+.++.+|..|+..|+.+. .. +.+...+..+|.|+ ....+++|+..|..+|.
T Consensus 786 D~d~~VR~aA~~aLg~~g----~~-----~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 786 DPDPLVRAAALAALAELG----CP-----PDDVAAATAALRAS--AWQVRQGAARALAGAAA 836 (897)
T ss_pred CCCHHHHHHHHHHHHhcC----Cc-----chhHHHHHHHhcCC--ChHHHHHHHHHHHhccc
Confidence 344666666666665552 11 22333455666654 35677888888888875
No 153
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=5.5e+02 Score=29.82 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=86.2
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
-=+|-|+..+.|.+... |...-..++.-+.-|-.=|.+.+-.|+..+++-+++.+ .|++-++|+.+..
T Consensus 163 FsL~~~ipLL~eriy~~---n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~L---------sD~s~eVr~~~~t 230 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVI---NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNML---------SDSSDEVRTLTDT 230 (675)
T ss_pred cCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHh---------cCCcHHHHHHHHH
Confidence 33666777776662222 33344457778888888999999999999999877764 4677799999998
Q ss_pred HHHHHHHHhCCCchh-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhh
Q 009433 287 LIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLL 360 (535)
Q Consensus 287 lL~~I~~~~~~~y~~-L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~ 360 (535)
+|+.....-.++=.+ =..++..++...+..+.. -..--|+.=+.++=+-.=+ -++|++..++..+-|-+..
T Consensus 231 ~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~--~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEP--EIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSD 302 (675)
T ss_pred HHHHHHHHHhcCccccCcccchhhccccccCCcH--HHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCC
Confidence 887777643322222 234555555555443222 1222345555554332223 2678888888877776653
No 154
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=30.27 E-value=1.3e+02 Score=29.51 Aligned_cols=92 Identities=14% Similarity=0.349 Sum_probs=60.5
Q ss_pred cCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHh-hcCCCc--ccccchhhhHHHHHHHHhcccc--CCCCC-C
Q 009433 202 DSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSL-LRNPHI--HIEPYLHQMMPSVITCLVSKRL--GNRFS-D 275 (535)
Q Consensus 202 D~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~AL-l~Np~L--~IepYLHqLlPsvLTCll~k~l--~~~~~-~ 275 (535)
...+-+++|-++.-|-.. -|.+|-+.....|++++.| ...+.+ .|-||+.||+| ++.....++. |.... .
T Consensus 71 ~~kilPvlPqLI~plk~A---L~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp-~ln~f~~k~~n~gd~i~y~ 146 (183)
T PF10274_consen 71 GEKILPVLPQLIIPLKRA---LNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLP-VLNLFKNKNVNLGDGIDYR 146 (183)
T ss_pred hhHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHhcccCCCcccccc
Confidence 344666777776666544 2345778888888888888 445555 78999999999 4554444442 22111 2
Q ss_pred cchHHHHHHHHHHHHHHHHhCC
Q 009433 276 NHWDLRNFVADLIASICTRFGH 297 (535)
Q Consensus 276 ~hw~LRd~AA~lL~~I~~~~~~ 297 (535)
..=.++|.-...|..+.+.-|.
T Consensus 147 ~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 147 KRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred cccchhHHHHHHHHHHHHhcCh
Confidence 3457888888888877766554
No 155
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=30.14 E-value=2e+02 Score=29.23 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYR---VREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyr---ireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
-++..++..|+ .++++++..|+....-. +..++..+..++...+..+++.+++..++...
T Consensus 167 il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 167 IVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 34555667788 59999999999876533 44455555556555556779999999999873
No 156
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.30 E-value=1.1e+02 Score=34.44 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
+.++.+++.-|+ .++++++..|++-..-.+|.++.+.-+++.. .+++|.+||..++
T Consensus 182 ~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~--~~~It~~~V~~~l 237 (504)
T PRK14963 182 GKLRRLLEAEGR-EAEPEALQLVARLADGAMRDAESLLERLLAL--GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHH
Confidence 346777888999 5899999999999999999998888777654 4579999998876
No 157
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=28.57 E-value=63 Score=33.77 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-hhhHhhc--------cc--chHHHHH---------hhhhhhhhHhhhh
Q 009433 306 VTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-SVVHLLI--------LP--NLELYLK---------FLEPEMLLEKQKN 365 (535)
Q Consensus 306 I~~tL~k~lldp~k~l~t~YGAI~GL~aLG~-~aVr~ll--------lP--~L~~y~~---------~Le~~l~~~~~~~ 365 (535)
.+.++.++|.|.+.++..+|-|+.-|..+|. .+++... ++ .+..++- .|...+.+++ ..
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~des-q~ 82 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDES-QE 82 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccc-cc
Confidence 4567777888888888888888888888743 4443321 11 1111111 1223334444 36
Q ss_pred hhhHHHHHHHHHHHH
Q 009433 366 EMKRHEAWRVYGALQ 380 (535)
Q Consensus 366 ~~~r~ea~~v~~aLl 380 (535)
.++||||-.+.|++.
T Consensus 83 pmvRhEAaealga~~ 97 (289)
T KOG0567|consen 83 PMVRHEAAEALGAIG 97 (289)
T ss_pred hHHHHHHHHHHHhhc
Confidence 789999999999987
No 158
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=28.49 E-value=3.7e+02 Score=23.40 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhh
Q 009433 287 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNE 366 (535)
Q Consensus 287 lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~ 366 (535)
-|+.++--.+..-..-...|+.-.++.|.|++ ...+|=|.-+|..+- ++.+.-++|++..++..|-.-..+ .+.
T Consensus 9 ~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d--~rVRy~AcEaL~ni~-k~~~~~~l~~f~~IF~~L~kl~~D---~d~ 82 (97)
T PF12755_consen 9 GLAAVAIALGKDISKYLDEILPPVLKCFDDQD--SRVRYYACEALYNIS-KVARGEILPYFNEIFDALCKLSAD---PDE 82 (97)
T ss_pred HHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC---Cch
Confidence 35555555555455556677777888887654 445888888888884 666778899999999888776543 345
Q ss_pred hhHHHHH
Q 009433 367 MKRHEAW 373 (535)
Q Consensus 367 ~~r~ea~ 373 (535)
.+|.-|+
T Consensus 83 ~Vr~~a~ 89 (97)
T PF12755_consen 83 NVRSAAE 89 (97)
T ss_pred hHHHHHH
Confidence 5665553
No 159
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=28.47 E-value=7.6e+02 Score=26.47 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=117.3
Q ss_pred cccCcHHHHH-HHHHHHHHHccC-CchHHHHHHHHhhhccCCcccccchhh-hhhhchh------hhcccCChHHHHHHH
Q 009433 165 KHVLSKELQL-YFDKIRELTVSR-SNSTVFKQALLSLAMDSGLHPLVPYFT-YFISEEV------VTRSLKNFSLLFALM 235 (535)
Q Consensus 165 kh~LSkElQ~-Yf~kIt~all~~-~~~~~r~~AL~sL~tD~gL~qLLPYfv-~FI~e~v------V~~nl~nl~~L~~Lm 235 (535)
...||.|... +++..++++... .++.....+|..|+. |..=|+++ .-..+.+ +............-+
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~----Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD----QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 4468888887 678888877543 344555667777765 22223221 1111111 222234444555556
Q ss_pred HHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCch---------------
Q 009433 236 RVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ--------------- 300 (535)
Q Consensus 236 rmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~--------------- 300 (535)
.+++-|+.+---.+-...+.-+|.++++++... . .+|..|..++..+..-.+..-.
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~---k------~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~ 226 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSA---K------DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLEN 226 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---h------HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccccc
Confidence 666777766655566668888999999988742 1 5677666666555544332100
Q ss_pred -hHHHHHHHHHHHHhcC--CCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHH
Q 009433 301 -NLQSRVTRTLLHAFLD--PTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYG 377 (535)
Q Consensus 301 -~L~~RI~~tL~k~lld--p~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~ 377 (535)
++-.-+.+.+.+.+.+ ..+......+++++|. |...++ -.+++..++...|.-... .+...|.+|..+..
T Consensus 227 ~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL--~~~~~~--~w~~~n~wL~v~e~cFn~---~d~~~k~~A~~aW~ 299 (372)
T PF12231_consen 227 GKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLL--GSSRLD--SWEHLNEWLKVPEKCFNS---SDPQVKIQAFKAWR 299 (372)
T ss_pred ccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh--CCchhh--ccHhHhHHHHHHHHHhcC---CCHHHHHHHHHHHH
Confidence 2223344445555555 2234556788888887 554433 467888888887777643 45677888888888
Q ss_pred HHHHHhh
Q 009433 378 ALQCAAG 384 (535)
Q Consensus 378 aLl~a~g 384 (535)
.|.-++.
T Consensus 300 ~liy~~~ 306 (372)
T PF12231_consen 300 RLIYASN 306 (372)
T ss_pred HHHHHhc
Confidence 8777443
No 160
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=28.34 E-value=7.9e+02 Score=26.60 Aligned_cols=200 Identities=19% Similarity=0.204 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHccCCchHHHHHHHH---hhh----ccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhc
Q 009433 171 ELQLYFDKIRELTVSRSNSTVFKQALL---SLA----MDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLR 243 (535)
Q Consensus 171 ElQ~Yf~kIt~all~~~~~~~r~~AL~---sL~----tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~ 243 (535)
+.+.+.+++++.+...+++..+..+++ .|- .+..+...+-.+..-+.. -.........+..+.=+++||+-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~Wi~KaLv~ 263 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS--SEDSELRPQALEILIWITKALVM 263 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc--cCCcchhHHHHHHHHHHHHHHHH
Confidence 555588888887766555544444333 333 233233333333322200 00111234556666778899988
Q ss_pred CCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC-----Cch----hHHHHHHHHHHHHh
Q 009433 244 NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-----VYQ----NLQSRVTRTLLHAF 314 (535)
Q Consensus 244 Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~-----~y~----~L~~RI~~tL~k~l 314 (535)
..+ |..-+++.-++.++-. ..+...||+-+..|+.-+.. .+. -=|+|+..+....|
T Consensus 264 R~~----~~~~~~~~~L~~lL~~-----------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L 328 (415)
T PF12460_consen 264 RGH----PLATELLDKLLELLSS-----------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKL 328 (415)
T ss_pred cCC----chHHHHHHHHHHHhCC-----------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHH
Confidence 665 5555555555554322 36678888888777753111 011 12677777766666
Q ss_pred cCCCCC----chhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 009433 315 LDPTKS----LSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDR 390 (535)
Q Consensus 315 ldp~k~----l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~~ 390 (535)
.+.-++ ....| +.+|+.+=..+=..++.|+++.++..|-+.+.. .+...+.-+-.+.-.++.-....+-+-
T Consensus 329 ~~~~~~~~~~~k~~y--L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~---~~~~v~~s~L~tL~~~l~~~~~~i~~h 403 (415)
T PF12460_consen 329 LEGFKEADDEIKSNY--LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL---PDADVLLSSLETLKMILEEAPELISEH 403 (415)
T ss_pred HHHHhhcChhhHHHH--HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 544333 22334 444444434555677889999999988888753 233345555555555554444444444
Q ss_pred hh
Q 009433 391 LK 392 (535)
Q Consensus 391 ~~ 392 (535)
+.
T Consensus 404 l~ 405 (415)
T PF12460_consen 404 LS 405 (415)
T ss_pred HH
Confidence 33
No 161
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.08 E-value=83 Score=36.32 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+.++.+|+.-|+ .++++++..|++-+.-.++.++.+.-|.+-.+.++ +|.++|...+.
T Consensus 187 ~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~-It~~~V~~~l~ 244 (614)
T PRK14971 187 NHLQYVASKEGI-TAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGN-ITYKSVIENLN 244 (614)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC-ccHHHHHHHhC
Confidence 356777888999 59999999999999988999998887876666554 88877765543
No 162
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=27.85 E-value=1.9e+02 Score=25.04 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccch
Q 009433 278 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNL 347 (535)
Q Consensus 278 w~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L 347 (535)
-.+|-.+=..|..++++.+ .-..-.++|+..++..+.|++ -..+..||.||.+|+..-=+ .++|.|
T Consensus 17 ~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D--syVYL~aI~~L~~La~~~p~-~vl~~L 82 (92)
T PF10363_consen 17 PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED--SYVYLNAIKGLAALADRHPD-EVLPIL 82 (92)
T ss_pred cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHHChH-HHHHHH
Confidence 4689999999999999877 223346899999999998774 34556999999999775444 244443
No 163
>PRK06893 DNA replication initiation factor; Validated
Probab=27.46 E-value=1.8e+02 Score=28.72 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCM--RHAHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfm--rhskR~~Lt~~DI~~AL~ 66 (535)
-++..|..-|+ .+++|+...|++..+-.+|.+..---+.. .-...+++|...++.+|.
T Consensus 169 iL~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 169 VLQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 34555667788 69999999999999855555443332222 123223799999998875
No 164
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=3.7e+02 Score=30.59 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhh
Q 009433 279 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 358 (535)
Q Consensus 279 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 358 (535)
.+|..|++.|+....-.-+..-+-++-+.......|.|+.+ ....--|+.||...-..+.-.-+-|.+..+.-++.+-.
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~ 351 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLF 351 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHH
Confidence 78999999888776432233334566777778888899888 77888899999887555555546666666666666555
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 009433 359 LLEKQKNEMKRHEAWRVYGALQCAAGLCVYD 389 (535)
Q Consensus 359 ~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~ 389 (535)
.++ +...|.-|+..+|+|..-+|.--.+
T Consensus 352 ~se---~~~~R~aa~~Lfg~L~~l~g~~~e~ 379 (533)
T KOG2032|consen 352 DSE---DDKMRAAAFVLFGALAKLAGGGWEE 379 (533)
T ss_pred Hhc---ChhhhhhHHHHHHHHHHHcCCCchh
Confidence 433 4556888999999999988875444
No 165
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=27.12 E-value=1.5e+02 Score=31.78 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREI---MQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireI---iqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
-++..++..|+ .++++++..||+.++--+|++ +.....++...+ +.+|.+.++.+|+.
T Consensus 276 il~~~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 276 ILQKKAEEEGL-ELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 45667777888 599999999999988766664 444444444444 45899999999864
No 166
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.86 E-value=1.4e+02 Score=34.82 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
.++.+++.-|+ .++++++..|++...-.+|.+++..-+.... ...++|.+||..++
T Consensus 186 ~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll~~-g~~~It~d~V~~~l 241 (624)
T PRK14959 186 HLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVLAL-GESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHh
Confidence 45666777888 4899999999998888888888877676644 44589999999887
No 167
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=26.75 E-value=65 Score=35.70 Aligned_cols=37 Identities=19% Similarity=0.058 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 31 PDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 31 ~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.-.-..|+.|+++|..++.+.+|..++.+|+..|++.
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 3344568899999999999999999999999999876
No 168
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=26.70 E-value=2.4e+02 Score=29.37 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYR---VREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyr---ireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
-++..++..|+ .++++++..|++...-. +..+++.+..++...+..+++.+++..+++..++
T Consensus 188 il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 188 IVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGV 252 (328)
T ss_pred HHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 34566777788 59999999999877543 4555555555554445568999999999977544
No 169
>PRK04195 replication factor C large subunit; Provisional
Probab=26.57 E-value=1.5e+02 Score=32.93 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
.++.+++.-|+ .+++++...|++...-.+|.++++..++. ..+.+++.+||+...
T Consensus 168 ~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 168 VLKRICRKEGI-ECDDEALKEIAERSGGDLRSAINDLQAIA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHh--cCCCCCcHHHHHHhh
Confidence 45677788899 49999999999999989999998877633 345679999998765
No 170
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=26.11 E-value=4.3e+02 Score=27.18 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=58.8
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-hhhHhhcccch
Q 009433 269 LGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-SVVHLLILPNL 347 (535)
Q Consensus 269 l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~-~aVr~lllP~L 347 (535)
+|.-..++....|..|-.+|+.++.+..... |...=.+.|..-+.+.-....+.=+|+.||.+|=. ..+. -...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~---~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS---PESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC---hhhH
Confidence 4444456788999999999999999887532 33333344444444433444455556777666521 1110 1113
Q ss_pred HHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh
Q 009433 348 ELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 384 (535)
Q Consensus 348 ~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g 384 (535)
..+.+.+-......+. -...|...-++...|+.--.
T Consensus 79 ~~i~~~l~~~~~~q~~-~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSL-PQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred HHHHHHHHHhCChhhh-hHHHHHHHHHHHHHHHHHhH
Confidence 3333444333332221 23346666666666665543
No 171
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.95 E-value=5.2e+02 Score=30.50 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC--chhhhhHH
Q 009433 251 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS--LSQHYGAI 328 (535)
Q Consensus 251 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~--l~t~YGAI 328 (535)
||+.+|+.-+|.-+=+|.- ..|..||.+++.|..--..--.+=-=+=....+---++..-+ ++...|||
T Consensus 600 p~l~~ivStiL~~L~~k~p---------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai 670 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPP---------DVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAI 670 (975)
T ss_pred cchHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHH
Q ss_pred HHHHhh-Chh----hhHhhcccchHHHHHhhhhhhhhHh--------------------------------hhhhhhHHH
Q 009433 329 QGLAAL-GPS----VVHLLILPNLELYLKFLEPEMLLEK--------------------------------QKNEMKRHE 371 (535)
Q Consensus 329 ~GL~aL-G~~----aVr~lllP~L~~y~~~Le~~l~~~~--------------------------------~~~~~~r~e 371 (535)
+++..- |-. -++. |+|.|-.++..=.+...... .-|+..|--
T Consensus 671 ~~I~sv~~~~~mqpPi~~-ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~ 749 (975)
T COG5181 671 CSIYSVHRFRSMQPPISG-ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRN 749 (975)
T ss_pred HHHhhhhcccccCCchhh-ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHh
Q ss_pred HHHHHHHHHHHhh
Q 009433 372 AWRVYGALQCAAG 384 (535)
Q Consensus 372 a~~v~~aLl~a~g 384 (535)
|..-+|-+-.|+|
T Consensus 750 A~~tfG~Is~aiG 762 (975)
T COG5181 750 ATETFGCISRAIG 762 (975)
T ss_pred hhhhhhhHHhhcC
No 172
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=25.80 E-value=1.5e+02 Score=32.83 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
.++.+|+.-|++ ++++++..|+..+.-.++.++.+.-|..--.. .+++.+||..++
T Consensus 188 ~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 188 KLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLYDYVVGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCcCHHHHHHHH
Confidence 445566677884 89999999999998888888888777653333 348888887766
No 173
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=25.71 E-value=3.1e+02 Score=28.54 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 20 NLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 20 ~lsdeaa~~La~dve------yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
.+++++...++.-+. .++.++++.|...+...++.++|.+||..|+...
T Consensus 220 ~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred CCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 378888887776554 2455677788888877778899999999999876
No 174
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=25.31 E-value=1.4e+02 Score=19.81 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC
Q 009433 278 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD 316 (535)
Q Consensus 278 w~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lld 316 (535)
|.+|..|+.-|+.| |+ ++.+..|.+++.|
T Consensus 1 ~~vR~~aa~aLg~~----~~------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQL----GD------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHc----CC------HhHHHHHHHHhcC
Confidence 78999999999987 32 3455556666554
No 175
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=25.27 E-value=2.4e+02 Score=24.90 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=49.3
Q ss_pred HHHHHHHHhcC--CCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHh
Q 009433 306 VTRTLLHAFLD--PTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAA 383 (535)
Q Consensus 306 I~~tL~k~lld--p~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~ 383 (535)
|+..+...+.| .+++...+==++.+|..|=. .....+-+..+.+...|+..+.. +.-|.+|.+|..+++..+
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~-----~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEI-----PELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHC
Confidence 34455666677 77888887778888776632 33333444666777777777643 245677888988888877
Q ss_pred hh
Q 009433 384 GL 385 (535)
Q Consensus 384 g~ 385 (535)
+.
T Consensus 86 ~~ 87 (107)
T PF08064_consen 86 DE 87 (107)
T ss_pred CH
Confidence 65
No 176
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=25.24 E-value=1.5e+02 Score=33.78 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
+.++.+++.-|+ .++++++..|+.-.+-.+|.++..--+.+..+ ..++|.+||..++
T Consensus 185 ~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~-~~~It~~~V~~vl 241 (559)
T PRK05563 185 ERLKYILDKEGI-EYEDEALRLIARAAEGGMRDALSILDQAISFG-DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCCCHHHHHHHh
Confidence 345677788899 59999999999988877777776666665555 5679999998876
No 177
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.22 E-value=1.6e+02 Score=33.23 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPL 73 (535)
.++.+++.-|+ .++++++..|+.-..-.+|.++...-+..-.+ +.++|.+||...+....-+-+
T Consensus 186 ~l~~il~~egi-~~~~~al~~ia~~s~GslR~al~lLdq~ia~~-~~~It~~~V~~~lg~~~~~~i 249 (509)
T PRK14958 186 HCQHLLKEENV-EFENAALDLLARAANGSVRDALSLLDQSIAYG-NGKVLIADVKTMLGTIEPLLL 249 (509)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCCCHHHH
Confidence 45668888899 48999999999998887888877766655554 678999999998755444333
No 178
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=25.16 E-value=75 Score=36.21 Aligned_cols=111 Identities=16% Similarity=0.269 Sum_probs=70.0
Q ss_pred chhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHH----------hccccCCCCCCcchH
Q 009433 210 PYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCL----------VSKRLGNRFSDNHWD 279 (535)
Q Consensus 210 PYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCl----------l~k~l~~~~~~~hw~ 279 (535)
||+.+|+-+. ...|+ -...++++++|-..|-+++-.-+-.++=-+|+.- .-..+| +
T Consensus 174 k~l~~~~fes-flk~l-----~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlG--------D 239 (821)
T COG5593 174 KYLKQRIFES-FLKNL-----RFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLG--------D 239 (821)
T ss_pred hHHHHHHHHH-HHHHH-----HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhc--------c
Confidence 5667777666 43332 2346677777777666655433322222111110 000122 2
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 280 LRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 280 LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
.|+.-|.--++++-+--...|+++.-|++-.-...+-|+..+.+.|=|++.|...
T Consensus 240 k~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt 294 (821)
T COG5593 240 KRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQT 294 (821)
T ss_pred chhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHH
Confidence 3665555556666666677899999999999999999999999999999998754
No 179
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.96 E-value=1.5e+02 Score=33.90 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
.++.++..-|+ .++++++..|+....-.++.++++.-|++... ..++|.+||...+.
T Consensus 187 ~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~LekL~~y~-~~~It~e~V~~ll~ 243 (585)
T PRK14950 187 HLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENLLQQLATTY-GGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHhc
Confidence 45566677788 49999999999999888888888888877754 45799999887763
No 180
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=23.73 E-value=1e+02 Score=32.24 Aligned_cols=72 Identities=31% Similarity=0.399 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCCCchhhhhHHHHHHhhCh-hhhHhhc-----------------ccchH--HHHHhhhhhhhhHhhhhh
Q 009433 307 TRTLLHAFLDPTKSLSQHYGAIQGLAALGP-SVVHLLI-----------------LPNLE--LYLKFLEPEMLLEKQKNE 366 (535)
Q Consensus 307 ~~tL~k~lldp~k~l~t~YGAI~GL~aLG~-~aVr~ll-----------------lP~L~--~y~~~Le~~l~~~~~~~~ 366 (535)
+-.+...++|+++++...|-|.-.|...|. ++|..++ +.+|. .-...|...|.. ...+.
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d-~~E~p 234 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD-ETEHP 234 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh-hhcch
Confidence 445677888999999999999999999866 4554432 11110 011222333332 34588
Q ss_pred hhHHHHHHHHHHH
Q 009433 367 MKRHEAWRVYGAL 379 (535)
Q Consensus 367 ~~r~ea~~v~~aL 379 (535)
++||||..-.|++
T Consensus 235 MVRhEaAeALGaI 247 (289)
T KOG0567|consen 235 MVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998777765
No 181
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.72 E-value=1.9e+02 Score=34.16 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
+.++.+++.-|+ .++++++..|++-..-.+|.++...-+.+..+ ..+++.+||...+...
T Consensus 185 ~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g-~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 185 DHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDALSLLDQAIALG-SGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHHccc
Confidence 346778899999 59999999999999988888888777766665 5679999999887554
No 182
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=23.45 E-value=3.7e+02 Score=32.39 Aligned_cols=40 Identities=10% Similarity=-0.063 Sum_probs=20.0
Q ss_pred HHHHHccCCchHHHHHHHHhhhccCCccc-ccchhhhhhhch
Q 009433 179 IRELTVSRSNSTVFKQALLSLAMDSGLHP-LVPYFTYFISEE 219 (535)
Q Consensus 179 It~all~~~~~~~r~~AL~sL~tD~gL~q-LLPYfv~FI~e~ 219 (535)
+..+ +..++...|..|...|..-..-.. -+|.+...+.+.
T Consensus 747 l~~~-l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~ 787 (897)
T PRK13800 747 VAGA-ATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDP 787 (897)
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCC
Confidence 3433 455566677755444443322111 256666666655
No 183
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=23.22 E-value=2.9e+02 Score=32.24 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=45.9
Q ss_pred HHHHHHHc----CCCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 9 IEVIAQSI----GVYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 9 V~~iAes~----Gi~~lsdeaa~~La~dve-------------yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
++.+++.+ ++..+++++...|.+... ..|.+++++|..+++..+++.++.+||..|++
T Consensus 324 ~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 324 VRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 44556555 355789999888887654 23566999999999999999999999999973
No 184
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=23.13 E-value=1.9e+02 Score=33.05 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
.++.+++.-|+ .++++++..|+....-.+|.++...-+...-+ +..+|.++|...+
T Consensus 184 ~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~-~~~It~~~V~~~l 239 (535)
T PRK08451 184 HLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTLLDQAIIYC-KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CCCCCHHHHHHHh
Confidence 45667778998 58999999999999888888888776666555 5678999988765
No 185
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.10 E-value=6.6e+02 Score=28.72 Aligned_cols=134 Identities=25% Similarity=0.296 Sum_probs=71.8
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
.++|.||.|.... ....+ .++.-..+-.++.--..+....++ +--+|.++.|+.+. |-++|+.|.-
T Consensus 109 G~v~~lV~~l~~~-~~~~l-q~eAAWaLTnIAsgtse~T~~vv~---agavp~fi~Ll~s~---------~~~v~eQavW 174 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD-DNPTL-QFEAAWALTNIASGTSEQTKVVVD---AGAVPIFIQLLSSP---------SADVREQAVW 174 (514)
T ss_pred CcHHHHHHHHccC-CChhH-HHHHHHHHHHHhcCchhhcccccc---CCchHHHHHHhcCC---------cHHHHHHHHH
Confidence 5789999888744 11111 112122222222222233333333 44577777777543 3367777777
Q ss_pred HHHHHHHHhCCCch--hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh--Ch------hhhHhhcccchHHHHHhhhh
Q 009433 287 LIASICTRFGHVYQ--NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL--GP------SVVHLLILPNLELYLKFLEP 356 (535)
Q Consensus 287 lL~~I~~~~~~~y~--~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL--G~------~aVr~lllP~L~~y~~~Le~ 356 (535)
-|+.|... |..+. =|..-++..|+..+..+.+ +..+=-+.+.|+.| |. +.|+ .++|-|...+..-++
T Consensus 175 ALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~-~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 175 ALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVA-PILPALLRLLHSTDE 251 (514)
T ss_pred HHhccccC-ChHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHH-HHHHHHHHHHhcCCH
Confidence 77777632 11111 1333456667777664444 88888899999998 65 3333 355555444443333
Q ss_pred h
Q 009433 357 E 357 (535)
Q Consensus 357 ~ 357 (535)
+
T Consensus 252 ~ 252 (514)
T KOG0166|consen 252 E 252 (514)
T ss_pred H
Confidence 3
No 186
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.00 E-value=1.1e+02 Score=35.86 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
+.++.|++.-|+ .++++++..||+...-.+|.++...-+.+-.+ +..+|.+||...+-..+-+
T Consensus 184 k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdALnLLDQaIayg-~g~IT~edV~~lLG~~d~e 246 (702)
T PRK14960 184 KHLGAILEKEQI-AADQDAIWQIAESAQGSLRDALSLTDQAIAYG-QGAVHHQDVKEMLGLIDRT 246 (702)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHhccCCHH
Confidence 345677888899 59999999999999988888888876766654 6789999998877654443
No 187
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=22.88 E-value=7.4e+02 Score=24.43 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHh----CCCchhHHHH
Q 009433 230 LLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRF----GHVYQNLQSR 305 (535)
Q Consensus 230 ~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~----~~~y~~L~~R 305 (535)
.+..++++++.|+.....-+..|--..+=++++++..........++...+=...-++|..|++.+ +..+|-+- -
T Consensus 4 ~~~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~-~ 82 (223)
T PF10441_consen 4 SILLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLL-S 82 (223)
T ss_pred HHHHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHH-H
Confidence 445578889999999988888887655444555555543222233555566667777888888744 44455333 4
Q ss_pred HHHHHHHHhc
Q 009433 306 VTRTLLHAFL 315 (535)
Q Consensus 306 I~~tL~k~ll 315 (535)
+++.|++.|.
T Consensus 83 ~l~~LL~~l~ 92 (223)
T PF10441_consen 83 VLQRLLRCLF 92 (223)
T ss_pred HHHHHHHHHH
Confidence 5566666666
No 188
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.70 E-value=1e+02 Score=28.11 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHH
Q 009433 288 IASICTRFGHVYQNLQSRVTRTLLHA 313 (535)
Q Consensus 288 L~~I~~~~~~~y~~L~~RI~~tL~k~ 313 (535)
|..+-+.+|-+||++|.|+-+.+.+.
T Consensus 52 lKe~e~~lgiSYPTvR~rLd~ii~~l 77 (113)
T PF09862_consen 52 LKEMEKELGISYPTVRNRLDKIIEKL 77 (113)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHh
Confidence 56677899999999999988876555
No 189
>KOG1657 consensus CCAAT-binding factor, subunit C (HAP5) [Transcription]
Probab=22.24 E-value=1.4e+02 Score=30.42 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccC
Q 009433 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (535)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~n 69 (535)
+|.+-||.|-++= .+.-++.|+.-..+...|+.|.++.-.|--...-++|++|.-.||..|+.-..
T Consensus 75 lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~ 141 (236)
T KOG1657|consen 75 LPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSE 141 (236)
T ss_pred CcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCC
Confidence 5555565554432 23358889999999999999999999999999999999999999999986543
No 190
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.07 E-value=3.1e+02 Score=27.03 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=41.9
Q ss_pred HHHHHhhcC-CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHH
Q 009433 236 RVARSLLRN-PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSR 305 (535)
Q Consensus 236 rmv~ALl~N-p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~R 305 (535)
+.+.-|+.. ..=.|-|.+.||++++-+++-++. =+....+=++|..++......-+.|-|.
T Consensus 60 ~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~---------~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 60 QGIKDLLERGGGEKILPVLPQLIIPLKRALNTRD---------PEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 445555555 666799999999999999986552 2667777778888865544433555555
No 191
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=21.92 E-value=7.6e+02 Score=26.75 Aligned_cols=90 Identities=9% Similarity=0.189 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC--CCcchHHHHHHH---HHHHHHHHHhCCCchh
Q 009433 227 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF--SDNHWDLRNFVA---DLIASICTRFGHVYQN 301 (535)
Q Consensus 227 nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~--~~~hw~LRd~AA---~lL~~I~~~~~~~y~~ 301 (535)
|++.+.+++.=.-..|+|.+|+...-+.+|.-.+...+-.+....+. ......--|.++ ..|+.++.-+..--.+
T Consensus 155 dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh~~~~k~ 234 (356)
T PF03542_consen 155 DWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYHSHFSKQ 234 (356)
T ss_pred CcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCHh
Confidence 67777777777778888888877666666666444443222221111 223344444444 4566666666655567
Q ss_pred HHHHHHHHHHHHhcC
Q 009433 302 LQSRVTRTLLHAFLD 316 (535)
Q Consensus 302 L~~RI~~tL~k~lld 316 (535)
-+..|.++|...+.+
T Consensus 235 ~qd~iV~~l~~GL~s 249 (356)
T PF03542_consen 235 EQDEIVRALESGLGS 249 (356)
T ss_pred HHHHHHHHHHHHhcc
Confidence 788999999988864
No 192
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=21.75 E-value=94 Score=32.96 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 35 yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
..|+.++.+|...+.+.+|..++.+|+..|++.
T Consensus 330 ~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 330 ADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 578899999999999999999999999999864
No 193
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=21.64 E-value=2e+02 Score=32.97 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.++.+++.-|+ .++++++..|++...-.+|.++...-|....+. .++|.+||..++..
T Consensus 186 ~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~alslLdklis~~~-~~It~e~V~~llg~ 243 (563)
T PRK06647 186 MLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD-SDITLEQIRSKMGL 243 (563)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCCCHHHHHHHhCC
Confidence 45667777898 499999999999888888888877777666655 46899998877643
No 194
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.52 E-value=1.2e+03 Score=29.39 Aligned_cols=150 Identities=19% Similarity=0.128 Sum_probs=100.2
Q ss_pred HHHHHHHHH--HHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhh
Q 009433 280 LRNFVADLI--ASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEP 356 (535)
Q Consensus 280 LRd~AA~lL--~~I~~~~~~~y-~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~ 356 (535)
.|--|+.|+ ..|...|++.- ...-..++.+..-.|. .++....=+||-++..+=..-=..++-|+++.++..+-.
T Consensus 799 ~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ 876 (1176)
T KOG1248|consen 799 TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA 876 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH
Confidence 355555554 45666665533 3455667777766665 566667778888888776655566778888888777665
Q ss_pred hhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCcc-----cccc-----ccCcccccCCCCccCcccccc
Q 009433 357 EMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQ-----SRWE-----SNRKGMIVFPSKRKASMDNLM 426 (535)
Q Consensus 357 ~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~ 426 (535)
.. .+.+++.--+|.+.|=+-+.+|-.+.|+.|++ -.. -.|| .+.+.+..++.++..+.+-..
T Consensus 877 ls------~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p--ee~~klL~nIRK~r~R~~rK~a~~~d~~~~~~s~d~s~ 948 (1176)
T KOG1248|consen 877 LS------HDHKIKVRKKVRLLLEKLIRKFGAEELESFLP--EEDMKLLTNIRKRRRRKKRKKAMIVDIEDRSDSTDGSQ 948 (1176)
T ss_pred HH------HhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH--HHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccc
Confidence 32 24566677788888888888899999999865 111 1222 344566677888888888777
Q ss_pred CCCCcccccccCC
Q 009433 427 LQPPVKKMATLGP 439 (535)
Q Consensus 427 ~~~~~~~~~~~~~ 439 (535)
-.|+.++-.++-.
T Consensus 949 ~~s~~~~a~~i~d 961 (1176)
T KOG1248|consen 949 KASAQKKAKTIED 961 (1176)
T ss_pred ccccccccchhHH
Confidence 7788777655443
No 195
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=21.12 E-value=8.9e+02 Score=29.69 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhcCCCccc-ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 009433 230 LLFALMRVARSLLRNPHIHI-EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTR 308 (535)
Q Consensus 230 ~L~~Lmrmv~ALl~Np~L~I-epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~ 308 (535)
.+...+.++.-++.|.-=.| ...+.+.+|+|..|++...--.......=.||-|-..-+-++|...+..-.++ ..|++
T Consensus 633 l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~-~yImq 711 (1005)
T KOG2274|consen 633 LCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNL-WYIMQ 711 (1005)
T ss_pred hhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccH-HHHHH
Confidence 33444566666777765555 33446788999999865311000001123567777777777887787766664 36777
Q ss_pred HHHHHhcCCCCCchhhh--hHHHH--HHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh
Q 009433 309 TLLHAFLDPTKSLSQHY--GAIQG--LAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 384 (535)
Q Consensus 309 tL~k~lldp~k~l~t~Y--GAI~G--L~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g 384 (535)
.+. .|+||..+-.+-. |-++- +..+|.+ +=||+..+++.+-. ++.+.|.-+|..-|+-+..
T Consensus 712 V~s-qLLdp~~sds~a~~VG~lV~tLit~a~~e-----l~~n~d~IL~Avis---------rmq~ae~lsviQsLi~Vfa 776 (1005)
T KOG2274|consen 712 VLS-QLLDPETSDSAAAFVGPLVLTLITHASSE-----LGPNLDQILRAVIS---------RLQQAETLSVIQSLIMVFA 776 (1005)
T ss_pred HHH-HHcCCccchhHHHHHhHHHHHHHHHHHHH-----hchhHHHHHHHHHH---------HHHHhhhHHHHHHHHHHHH
Confidence 776 7789987744321 22211 1222221 34555555443332 3445677889999999999
Q ss_pred hhhhhhhhhh
Q 009433 385 LCVYDRLKTV 394 (535)
Q Consensus 385 ~~~~~~~~~~ 394 (535)
...+..++.+
T Consensus 777 hL~~t~~~~~ 786 (1005)
T KOG2274|consen 777 HLVHTDLDQL 786 (1005)
T ss_pred HHhhCCHHHH
Confidence 9999999988
No 196
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=20.82 E-value=53 Score=30.39 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhC--------------CCccCHhhHHHHhhccCCCC
Q 009433 38 REIMQEAIKCMRHAH--------------RTVLTANDVDSALNLRNVEP 72 (535)
Q Consensus 38 reIiqeA~Kfmrhsk--------------R~~Lt~~DI~~AL~~~nvEP 72 (535)
.++|+.|++|++|-+ .|=||.+||+.||+..+-.+
T Consensus 3 e~li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 368899999998864 34699999999999876643
No 197
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=20.76 E-value=3.1e+02 Score=24.56 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHH---HHHhCCCchhH
Q 009433 226 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASI---CTRFGHVYQNL 302 (535)
Q Consensus 226 ~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I---~~~~~~~y~~L 302 (535)
.+...+..++|+.+.|+.|.+..+..|++. +-++ .....+=...+.++..+ .+......-.+
T Consensus 5 ~~~~~~~~ilr~LQLlCEghn~~lQnylR~------------Q~~~---~~s~nlV~~~~~ll~~l~~~~~~~~~~~~~~ 69 (109)
T PF08454_consen 5 QDMEIIQRILRFLQLLCEGHNLDLQNYLRQ------------QPNN---KNSYNLVSETVDLLDSLQEFGKDINSDNIEL 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHCcCCHHHHHHHhc------------CCCC---CCccHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 356678889999999999999999999972 2211 23456666667777666 44434444455
Q ss_pred HHHHHHHHHHHhcCCC
Q 009433 303 QSRVTRTLLHAFLDPT 318 (535)
Q Consensus 303 ~~RI~~tL~k~lldp~ 318 (535)
-..+++||......|-
T Consensus 70 ~~q~~~tL~E~iQGPC 85 (109)
T PF08454_consen 70 IIQCFDTLTEFIQGPC 85 (109)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5667777776666543
No 198
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=20.57 E-value=2.2e+02 Score=31.51 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CccCHhhHHHHhhc
Q 009433 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR----TVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~Gi~-~lsdeaa~~La~dveyrireIiqeA~KfmrhskR----~~Lt~~DI~~AL~~ 67 (535)
-++..++..|+. .+++|++..||+...-.+|++..-..++...+.. +.+|.+.+..+|+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 455666777863 6999999999999998888887777666544432 57999999999864
No 199
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.51 E-value=2.9e+02 Score=28.45 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=57.3
Q ss_pred HHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc------hhHHHHHHHH
Q 009433 237 VARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY------QNLQSRVTRT 309 (535)
Q Consensus 237 mv~ALl-~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y------~~L~~RI~~t 309 (535)
+.+.+. +-..=.++.+++.++|++|+.+ .|..-..|-.+..+|.+++.+....- .++-.=+.+.
T Consensus 100 l~w~v~~~~~~~~i~~~~~liiP~iL~ll---------DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~a 170 (282)
T PF10521_consen 100 LSWIVLSQLDRPWISQHWPLIIPPILNLL---------DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDA 170 (282)
T ss_pred HHHHHHhcCCcchHHHhhhHHHhhHHHHh---------cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHH
Confidence 344555 5555578899999999999985 23345789999999999998765433 3344444555
Q ss_pred HHHHhc------CCCC---CchhhhhHHHHHHhh
Q 009433 310 LLHAFL------DPTK---SLSQHYGAIQGLAAL 334 (535)
Q Consensus 310 L~k~ll------dp~k---~l~t~YGAI~GL~aL 334 (535)
+.+.+. .... -+..-|.++..|...
T Consensus 171 l~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 171 LFPCLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 555554 1111 145567777777543
No 200
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=20.30 E-value=4.5e+02 Score=20.92 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=50.4
Q ss_pred HHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHH
Q 009433 179 IRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMP 258 (535)
Q Consensus 179 It~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlP 258 (535)
+.+.+.+..+...|..|+..|..- +-...+|+|+..+.+. |..+-. ..+.||-.-. -.+.+|
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~-~~~~~~~~L~~~l~d~-------~~~vr~---~a~~aL~~i~-------~~~~~~ 65 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL-GDPEAIPALIELLKDE-------DPMVRR---AAARALGRIG-------DPEAIP 65 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC-THHHHHHHHHHHHTSS-------SHHHHH---HHHHHHHCCH-------HHHTHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc-CCHhHHHHHHHHHcCC-------CHHHHH---HHHHHHHHhC-------CHHHHH
Confidence 445554556677788888888743 5557788888887655 333222 3444444321 356666
Q ss_pred HHHHHHhccccCCCCCCcchHHHHHHHHHHH
Q 009433 259 SVITCLVSKRLGNRFSDNHWDLRNFVADLIA 289 (535)
Q Consensus 259 svLTCll~k~l~~~~~~~hw~LRd~AA~lL~ 289 (535)
.+..++- .++.+.+|..|+.-|+
T Consensus 66 ~L~~~l~--------~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQ--------DDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHT--------C-SSHHHHHHHHHHHH
T ss_pred HHHHHHc--------CCCcHHHHHHHHhhcC
Confidence 6666541 1345678888887764
Done!