Query 009433
Match_columns 535
No_of_seqs 171 out of 320
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atg_A TAF6; transcription, TF 100.0 9.5E-59 3.2E-63 446.8 19.1 183 165-358 2-184 (196)
2 1taf_B TFIID TBP associated fa 99.9 1.5E-24 5E-29 176.5 9.7 67 1-67 4-70 (70)
3 2hue_C Histone H4; mini beta s 99.7 4.5E-18 1.5E-22 143.2 6.9 75 3-78 10-84 (84)
4 1id3_B Histone H4; nucleosome 99.7 2.2E-17 7.7E-22 143.7 7.9 75 3-78 28-102 (102)
5 2yfw_B Histone H4, H4; cell cy 99.6 1.9E-16 6.4E-21 138.1 7.2 75 3-78 29-103 (103)
6 1tzy_D Histone H4-VI; histone- 99.6 2.4E-16 8.2E-21 137.4 7.5 74 4-78 30-103 (103)
7 1ku5_A HPHA, archaeal histon; 99.2 2.8E-11 9.7E-16 98.1 8.3 67 1-67 4-70 (70)
8 2ly8_A Budding yeast chaperone 99.0 3.3E-10 1.1E-14 101.1 6.6 61 16-77 60-120 (121)
9 1f1e_A Histone fold protein; a 98.9 2.1E-09 7.3E-14 99.7 9.1 72 1-72 2-74 (154)
10 2l5a_A Histone H3-like centrom 98.9 2.4E-10 8.1E-15 111.9 1.6 68 9-77 167-234 (235)
11 1b67_A Protein (histone HMFA); 98.9 7.8E-09 2.7E-13 83.1 9.0 67 2-68 1-67 (68)
12 1taf_A TFIID TBP associated fa 98.8 1.4E-08 4.9E-13 82.0 8.5 62 7-68 5-66 (68)
13 3b0c_T CENP-T, centromere prot 98.7 1.8E-08 6E-13 88.9 7.7 68 3-70 7-74 (111)
14 1f1e_A Histone fold protein; a 98.7 5.1E-08 1.7E-12 90.5 8.5 65 3-67 82-146 (154)
15 1n1j_A NF-YB; histone-like PAI 98.4 7.9E-07 2.7E-11 75.7 8.9 68 3-70 8-77 (93)
16 3b0c_W CENP-W, centromere prot 98.4 5.4E-07 1.8E-11 74.1 7.5 65 3-67 4-69 (76)
17 2hue_B Histone H3; mini beta s 98.4 1.1E-06 3.9E-11 72.5 8.5 70 1-70 1-75 (77)
18 4dra_A Centromere protein S; D 98.4 3.1E-07 1.1E-11 80.9 5.5 60 8-67 32-94 (113)
19 3b0b_B CENP-S, centromere prot 98.4 4.7E-07 1.6E-11 79.3 6.1 60 8-67 24-86 (107)
20 3nqj_A Histone H3-like centrom 98.3 1.7E-06 5.8E-11 72.3 8.1 71 1-71 1-78 (82)
21 3v9r_A MHF1, uncharacterized p 98.2 3.9E-06 1.3E-10 71.3 8.2 59 8-67 17-79 (90)
22 3vh5_A CENP-S; histone fold, c 98.0 3.7E-06 1.3E-10 76.5 5.3 59 8-67 24-86 (140)
23 1jfi_B DR1 protein, transcript 98.0 1.6E-05 5.6E-10 75.3 9.1 69 3-71 15-84 (179)
24 2byk_B Chrac-14; nucleosome sl 98.0 1.5E-05 5.1E-10 71.8 8.0 68 3-70 9-78 (128)
25 1n1j_B NF-YC; histone-like PAI 97.9 2.6E-05 8.8E-10 66.9 7.7 67 2-68 18-85 (97)
26 2yfv_A Histone H3-like centrom 97.8 3.9E-05 1.3E-09 66.4 7.5 65 3-67 27-99 (100)
27 3nqu_A Histone H3-like centrom 97.8 3.3E-05 1.1E-09 70.4 7.0 69 3-71 61-136 (140)
28 1tzy_C Histone H3; histone-fol 97.8 6.8E-05 2.3E-09 68.2 8.3 68 3-70 62-134 (136)
29 2nqb_C Histone H2A; nucleosome 97.7 7.1E-05 2.4E-09 67.0 7.8 65 3-67 23-88 (123)
30 2f8n_G Core histone macro-H2A. 97.7 6.9E-05 2.3E-09 66.8 7.7 65 3-67 22-87 (120)
31 3r45_A Histone H3-like centrom 97.7 5.2E-05 1.8E-09 70.1 6.4 68 3-70 77-151 (156)
32 1ibr_B P95, importin beta-1 su 97.7 0.0012 4.2E-08 67.1 16.9 129 248-386 314-442 (462)
33 1tzy_A Histone H2A-IV; histone 97.6 0.0001 3.6E-09 66.4 7.8 65 3-67 25-90 (129)
34 2f8n_K Histone H2A type 1; nuc 97.6 9.7E-05 3.3E-09 68.1 7.3 65 3-67 44-109 (149)
35 1id3_C Histone H2A.1; nucleoso 97.6 0.00011 3.7E-09 66.5 6.6 64 3-66 25-89 (131)
36 1jfi_A Transcription regulator 97.6 8.7E-05 3E-09 63.8 5.7 65 3-67 11-76 (98)
37 1f66_C Histone H2A.Z; nucleoso 97.4 0.00024 8.2E-09 64.0 6.9 65 3-67 27-93 (128)
38 4fdd_A Transportin-1; heat rep 97.4 0.0036 1.2E-07 70.4 17.4 193 175-384 216-432 (852)
39 4g92_C HAPE; transcription fac 97.4 0.0004 1.4E-08 61.7 7.5 66 3-68 41-107 (119)
40 2jss_A Chimera of histone H2B. 97.2 0.00067 2.3E-08 65.0 8.0 65 3-67 105-171 (192)
41 1qgr_A Protein (importin beta 97.2 0.0016 5.6E-08 72.1 12.3 180 190-385 343-541 (876)
42 2bpt_A Importin beta-1 subunit 97.2 0.0038 1.3E-07 69.0 15.2 180 190-386 346-534 (861)
43 2bpt_A Importin beta-1 subunit 97.1 0.0066 2.3E-07 67.1 15.8 127 249-385 318-444 (861)
44 2qk2_A LP04448P; mini spindles 97.1 0.0088 3E-07 57.0 14.3 129 231-386 78-210 (242)
45 1qgr_A Protein (importin beta 97.1 0.0085 2.9E-07 66.4 16.2 126 249-384 315-440 (876)
46 2nqb_D Histone H2B; nucleosome 96.8 0.0029 9.8E-08 56.4 7.2 61 8-68 38-99 (123)
47 2qk1_A Protein STU2; STU2P, XM 96.8 0.018 6.1E-07 56.3 13.6 124 248-386 96-225 (249)
48 2qk2_A LP04448P; mini spindles 96.7 0.011 3.8E-07 56.2 11.9 107 174-297 98-209 (242)
49 1tzy_B Histone H2B; histone-fo 96.7 0.0038 1.3E-07 55.9 7.2 61 8-68 41-102 (126)
50 4fdd_A Transportin-1; heat rep 96.5 0.023 7.8E-07 63.9 13.8 138 233-382 648-785 (852)
51 2byk_A Chrac-16; nucleosome sl 96.0 0.0052 1.8E-07 56.1 4.6 66 3-68 19-86 (140)
52 1u6g_C TIP120 protein, CAND1; 95.9 0.074 2.5E-06 62.2 14.7 127 246-386 558-684 (1230)
53 1u6g_C TIP120 protein, CAND1; 95.7 0.14 4.8E-06 59.9 16.2 187 176-387 8-210 (1230)
54 2jss_A Chimera of histone H2B. 95.6 0.031 1E-06 53.4 8.2 60 8-67 8-68 (192)
55 1b3u_A Protein (protein phosph 95.5 0.1 3.6E-06 54.6 12.8 170 185-386 334-514 (588)
56 1b3u_A Protein (protein phosph 95.3 0.097 3.3E-06 54.8 11.5 176 183-386 371-553 (588)
57 1h3o_B Transcription initiatio 95.3 0.1 3.5E-06 42.9 9.0 65 3-67 5-70 (76)
58 1bh9_B TAFII28; histone fold, 95.0 0.1 3.5E-06 44.0 8.5 68 2-69 15-83 (89)
59 1ibr_B P95, importin beta-1 su 94.8 0.088 3E-06 53.3 9.4 95 190-297 343-441 (462)
60 2l5a_A Histone H3-like centrom 94.3 0.081 2.8E-06 51.9 7.1 64 7-70 19-86 (235)
61 4ffb_C Protein STU2; tubulin f 91.9 1.8 6.2E-05 41.9 12.8 145 227-387 68-218 (278)
62 4db8_A Armadillo-repeat protei 91.8 0.54 1.9E-05 43.8 8.7 142 176-336 14-167 (252)
63 2qk1_A Protein STU2; STU2P, XM 91.4 1 3.5E-05 43.7 10.4 109 174-298 100-225 (249)
64 4dra_E Centromere protein X; D 91.4 0.91 3.1E-05 37.9 8.5 63 3-66 12-78 (84)
65 2of3_A ZYG-9; multifunctional 90.4 3.2 0.00011 41.4 13.1 140 227-393 100-248 (266)
66 1oyz_A Hypothetical protein YI 89.7 12 0.0004 35.5 16.1 131 179-337 28-158 (280)
67 4db6_A Armadillo repeat protei 89.3 1.1 3.6E-05 40.6 8.0 141 175-334 13-165 (210)
68 1h3o_A Transcription initiatio 89.3 0.25 8.7E-06 40.4 3.3 45 7-51 10-54 (75)
69 4hxt_A De novo protein OR329; 89.2 1.6 5.6E-05 40.0 9.4 112 207-336 44-157 (252)
70 3b0b_C CENP-X, centromere prot 89.1 1.4 4.7E-05 36.5 7.6 63 3-66 8-74 (81)
71 3ltj_A Alpharep-4; protein eng 88.8 13 0.00043 33.3 15.0 34 185-219 24-57 (201)
72 2x1g_F Cadmus; transport prote 87.5 3.7 0.00013 46.7 12.6 148 195-359 444-594 (971)
73 2x19_B Importin-13; nuclear tr 87.4 2.9 9.9E-05 47.2 11.6 136 207-359 441-578 (963)
74 3ltm_A Alpha-REP4; protein eng 86.8 12 0.0004 33.9 13.4 50 275-336 123-172 (211)
75 2jdq_A Importin alpha-1 subuni 86.7 6.4 0.00022 39.5 12.7 131 187-335 162-304 (450)
76 1wa5_B Importin alpha subunit; 86.4 4.7 0.00016 42.3 12.0 111 207-335 215-327 (530)
77 2vgl_B AP-2 complex subunit be 86.4 2.7 9.3E-05 45.4 10.3 90 278-388 404-493 (591)
78 1wa5_B Importin alpha subunit; 86.0 5.9 0.0002 41.5 12.4 131 187-335 227-369 (530)
79 4db8_A Armadillo-repeat protei 85.6 2.2 7.5E-05 39.6 8.0 110 208-335 97-208 (252)
80 1wa5_C Importin alpha RE-expor 85.3 5.8 0.0002 45.3 12.7 148 195-359 384-558 (960)
81 2jdq_A Importin alpha-1 subuni 85.0 10 0.00035 37.9 13.2 112 207-336 149-263 (450)
82 4hxt_A De novo protein OR329; 84.6 4.7 0.00016 36.8 9.7 110 208-335 87-198 (252)
83 3ltm_A Alpha-REP4; protein eng 84.3 17 0.00059 32.7 13.3 121 177-337 22-142 (211)
84 3ltj_A Alpharep-4; protein eng 83.5 11 0.00039 33.6 11.6 123 176-338 47-169 (201)
85 2vgl_B AP-2 complex subunit be 83.0 13 0.00045 40.0 13.7 76 249-337 115-190 (591)
86 1oyz_A Hypothetical protein YI 82.8 10 0.00036 35.8 11.6 121 177-337 131-251 (280)
87 4b8j_A Importin subunit alpha- 80.8 11 0.00039 39.2 11.9 112 206-334 243-356 (528)
88 4hat_C Exportin-1; heat repeat 80.2 4.7 0.00016 47.2 9.5 158 193-359 434-599 (1023)
89 2x19_B Importin-13; nuclear tr 80.0 17 0.00057 41.0 13.8 88 232-335 511-602 (963)
90 1w63_A Adapter-related protein 79.9 14 0.00048 40.2 12.7 139 175-338 351-492 (618)
91 1wa5_C Importin alpha RE-expor 79.7 3.8 0.00013 46.8 8.4 106 229-334 307-432 (960)
92 4ffb_C Protein STU2; tubulin f 79.4 11 0.00037 36.3 10.5 122 178-315 106-242 (278)
93 1vsy_5 Proteasome activator BL 78.4 1.8 6.2E-05 50.6 5.2 122 226-358 814-947 (997)
94 2x1g_F Cadmus; transport prote 78.1 9.5 0.00032 43.3 11.0 85 231-332 527-614 (971)
95 1xqr_A HSPBP1 protein; armadil 77.5 29 0.00098 34.4 13.2 156 208-387 125-286 (296)
96 4b8j_A Importin subunit alpha- 76.8 25 0.00086 36.5 13.1 112 207-335 160-272 (528)
97 3uk6_A RUVB-like 2; hexameric 75.9 8.8 0.0003 38.1 8.9 58 9-67 268-329 (368)
98 2iw3_A Elongation factor 3A; a 73.3 70 0.0024 37.4 16.6 176 195-394 37-214 (986)
99 3m1i_C Exportin-1; heat repeat 72.9 37 0.0013 39.1 14.3 85 248-335 384-481 (1049)
100 1jr3_D DNA polymerase III, del 72.6 3.1 0.00011 41.4 4.6 60 7-67 149-208 (343)
101 3bos_A Putative DNA replicatio 72.5 5.7 0.0002 36.3 6.1 57 8-66 182-241 (242)
102 2chg_A Replication factor C sm 70.4 7.6 0.00026 34.5 6.3 55 9-66 170-224 (226)
103 4db6_A Armadillo repeat protei 69.8 13 0.00043 33.3 7.7 140 177-335 57-208 (210)
104 3kw6_A 26S protease regulatory 65.2 6.1 0.00021 31.2 4.0 42 26-67 27-72 (78)
105 3ksy_A SOS-1, SON of sevenless 65.1 14 0.00049 43.3 8.6 64 4-67 105-168 (1049)
106 1njg_A DNA polymerase III subu 61.6 12 0.00041 33.5 5.8 56 9-66 194-249 (250)
107 2dzn_B 26S protease regulatory 61.2 7.9 0.00027 31.0 4.0 34 35-68 35-68 (82)
108 3m1i_C Exportin-1; heat repeat 61.2 47 0.0016 38.2 12.0 155 194-359 435-599 (1049)
109 1in4_A RUVB, holliday junction 60.6 18 0.00061 36.1 7.4 63 8-71 188-253 (334)
110 3gs3_A Symplekin, LD45768P; he 59.1 1.4E+02 0.0047 29.3 14.3 98 277-380 66-172 (257)
111 2z6g_A B-catenin; FULL-length, 53.8 29 0.00099 38.8 8.4 123 195-335 342-471 (780)
112 3vlf_B 26S protease regulatory 53.3 14 0.00049 30.0 4.3 44 26-69 25-72 (88)
113 2krk_A 26S protease regulatory 53.3 13 0.00043 30.4 4.0 33 35-67 48-80 (86)
114 3ul1_B Importin subunit alpha- 51.5 2.3E+02 0.0078 29.5 14.6 123 176-318 59-198 (510)
115 2vgl_A Adaptor protein complex 51.0 23 0.00077 38.8 6.8 78 250-338 141-218 (621)
116 2z6h_A Catenin beta-1, beta-ca 50.4 75 0.0026 34.1 10.8 116 187-317 26-152 (644)
117 1te4_A Conserved protein MTH18 50.4 14 0.00048 31.2 4.0 57 255-332 73-129 (131)
118 3aji_B S6C, proteasome (prosom 50.1 9.5 0.00032 30.4 2.7 34 35-68 38-71 (83)
119 1jdh_A Beta-catenin; beta-cate 47.4 54 0.0018 33.5 8.6 110 208-335 228-338 (529)
120 3a6p_A Exportin-5; exportin-5, 46.1 4.3E+02 0.015 31.1 17.8 89 201-296 345-455 (1204)
121 2c9o_A RUVB-like 1; hexameric 45.4 53 0.0018 34.2 8.3 58 10-68 376-437 (456)
122 2v1u_A Cell division control p 45.4 55 0.0019 32.0 8.0 64 5-68 202-276 (387)
123 3opb_A SWI5-dependent HO expre 45.3 1.6E+02 0.0055 33.5 12.6 140 229-381 472-635 (778)
124 2z6h_A Catenin beta-1, beta-ca 44.1 79 0.0027 34.0 9.7 108 209-334 226-334 (644)
125 1w63_A Adapter-related protein 42.3 3.5E+02 0.012 29.0 15.3 154 169-336 136-306 (618)
126 3o2t_A Symplekin; heat repeat, 42.1 3.2E+02 0.011 28.4 13.7 114 252-380 60-182 (386)
127 2z6g_A B-catenin; FULL-length, 41.0 67 0.0023 35.9 8.8 117 186-317 161-288 (780)
128 1sxj_D Activator 1 41 kDa subu 40.5 17 0.00059 35.5 3.4 57 9-66 201-261 (353)
129 1jdh_A Beta-catenin; beta-cate 40.5 1E+02 0.0036 31.3 9.5 110 207-333 59-169 (529)
130 1g8p_A Magnesium-chelatase 38 39.5 88 0.003 30.3 8.5 50 17-67 265-321 (350)
131 2qz4_A Paraplegin; AAA+, SPG7, 38.5 17 0.00057 34.0 2.8 59 8-67 185-248 (262)
132 3h4m_A Proteasome-activating n 37.0 26 0.0009 33.3 4.0 43 26-68 212-258 (285)
133 2qby_A CDC6 homolog 1, cell di 36.8 1.4E+02 0.0048 28.9 9.5 50 19-68 217-272 (386)
134 3ibv_A Exportin-T; karyopherin 36.8 1.2E+02 0.004 35.2 10.1 58 255-315 531-588 (980)
135 3v9r_B MHF2, uncharacterized p 36.7 46 0.0016 27.8 4.8 63 3-66 1-74 (88)
136 1jr3_A DNA polymerase III subu 36.6 47 0.0016 32.6 5.9 57 8-66 186-242 (373)
137 3k1j_A LON protease, ATP-depen 36.4 70 0.0024 34.6 7.8 50 18-67 312-374 (604)
138 4hat_C Exportin-1; heat repeat 35.5 2.5E+02 0.0084 32.8 12.5 144 234-392 524-687 (1023)
139 3u0r_A Apoptosis inhibitor 5; 35.3 4.6E+02 0.016 28.3 14.3 265 160-433 162-472 (507)
140 1te4_A Conserved protein MTH18 33.4 25 0.00086 29.6 2.9 51 275-337 53-103 (131)
141 2db0_A 253AA long hypothetical 33.0 3.5E+02 0.012 26.2 11.3 80 279-372 122-201 (253)
142 1sxj_B Activator 1 37 kDa subu 31.1 90 0.0031 29.7 6.8 56 8-66 174-229 (323)
143 3now_A UNC-45 protein, SD10334 29.9 1.6E+02 0.0055 33.6 9.5 97 227-334 508-608 (810)
144 2qby_B CDC6 homolog 3, cell di 29.8 1.1E+02 0.0036 30.1 7.2 63 4-68 197-270 (384)
145 2chq_A Replication factor C sm 29.6 56 0.0019 31.1 5.0 55 8-65 169-223 (319)
146 2ly8_A Budding yeast chaperone 29.1 81 0.0028 27.8 5.4 47 8-54 10-60 (121)
147 3ip4_C Aspartyl/glutamyl-tRNA( 28.2 1E+02 0.0035 25.8 5.8 39 1-40 1-39 (100)
148 3mn2_A Probable ARAC family tr 27.8 1.8E+02 0.0061 23.5 7.2 61 8-80 20-85 (108)
149 3tpo_A Importin subunit alpha- 27.5 4.3E+02 0.015 27.4 11.9 156 208-388 336-497 (529)
150 4ady_A RPN2, 26S proteasome re 27.4 3E+02 0.01 32.1 11.3 66 274-339 657-724 (963)
151 3ff5_A PEX14P, peroxisomal bio 26.1 47 0.0016 25.3 2.9 29 38-66 10-52 (54)
152 2r44_A Uncharacterized protein 25.5 2.2E+02 0.0074 27.5 8.6 48 20-67 226-296 (331)
153 2vgl_A Adaptor protein complex 24.9 6.7E+02 0.023 27.0 14.7 36 299-336 323-358 (621)
154 3kfu_G Glutamyl-tRNA(Gln) amid 24.1 1.4E+02 0.0048 24.6 5.8 38 1-40 4-41 (92)
155 1fnn_A CDC6P, cell division co 23.9 2.6E+02 0.0087 27.2 8.8 49 20-68 214-274 (389)
156 3pfi_A Holliday junction ATP-d 23.8 1.3E+02 0.0044 29.2 6.5 62 8-70 192-256 (338)
157 3d8b_A Fidgetin-like protein 1 23.8 1.2E+02 0.0039 30.4 6.3 60 8-68 259-334 (357)
158 4b4t_J 26S protease regulatory 23.7 62 0.0021 34.0 4.3 42 26-67 343-388 (405)
159 3a6p_A Exportin-5; exportin-5, 23.7 2.9E+02 0.01 32.5 10.6 160 231-406 510-682 (1204)
160 1ixz_A ATP-dependent metallopr 23.7 64 0.0022 30.1 4.1 46 21-66 204-254 (254)
161 1lv7_A FTSH; alpha/beta domain 23.6 78 0.0027 29.6 4.7 43 26-68 206-252 (257)
162 3tpo_A Importin subunit alpha- 23.4 6.3E+02 0.022 26.1 15.1 109 207-334 119-236 (529)
163 3a1y_A 50S ribosomal protein P 23.1 1E+02 0.0034 23.5 4.3 40 4-44 17-57 (58)
164 2k9s_A Arabinose operon regula 22.9 2.9E+02 0.0099 22.2 7.6 59 7-80 21-85 (107)
165 2z4s_A Chromosomal replication 22.8 70 0.0024 33.3 4.6 58 9-68 272-332 (440)
166 4b4t_I 26S protease regulatory 22.6 67 0.0023 34.1 4.3 42 26-67 377-422 (437)
167 1l8q_A Chromosomal replication 22.6 51 0.0017 32.2 3.3 57 9-67 175-239 (324)
168 1iy2_A ATP-dependent metallopr 21.9 72 0.0025 30.4 4.2 46 21-66 228-278 (278)
169 2w84_A Peroxisomal membrane pr 21.7 46 0.0016 26.7 2.2 32 39-70 16-61 (70)
170 3oc3_A Helicase MOT1, MOT1; re 21.5 1.5E+02 0.0051 33.2 6.8 86 260-359 222-309 (800)
171 3b9p_A CG5977-PA, isoform A; A 21.1 1.3E+02 0.0045 28.5 5.9 58 9-67 198-271 (297)
172 3bl2_A V-BCL-2; protein-protei 20.8 1.3E+02 0.0045 26.0 5.0 42 300-346 61-102 (131)
173 4fqn_A Malcavernin; helical do 20.7 43 0.0015 28.5 1.9 62 471-532 13-82 (98)
174 4b4t_H 26S protease regulatory 20.6 77 0.0027 33.9 4.4 41 27-67 405-449 (467)
175 4b4t_L 26S protease subunit RP 20.6 77 0.0026 33.5 4.3 42 26-67 376-421 (437)
176 3tjz_B Coatomer subunit gamma; 20.3 6.3E+02 0.022 25.6 11.1 138 170-336 64-205 (355)
177 3ul1_B Importin subunit alpha- 20.3 7.2E+02 0.025 25.6 12.5 141 233-388 335-478 (510)
178 1hqc_A RUVB; extended AAA-ATPa 20.1 1E+02 0.0036 29.5 4.9 60 9-69 177-239 (324)
No 1
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=100.00 E-value=9.5e-59 Score=446.75 Aligned_cols=183 Identities=37% Similarity=0.632 Sum_probs=177.7
Q ss_pred cccCcHHHHHHHHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcC
Q 009433 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRN 244 (535)
Q Consensus 165 kh~LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~N 244 (535)
||+||+|+|+||++||++|++ ..|++||++|++|||||||+|||++||+++ |++|++|+..|.++|+|++||++|
T Consensus 2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~-v~~nl~~l~~L~~lm~~~~ALl~N 76 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISEL-ILKSFKEAEVLKTCIALYFSLIKN 76 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHC
T ss_pred CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHcC
Confidence 799999999999999999997 468999999999999999999999999999 999999999999999999999999
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhh
Q 009433 245 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQH 324 (535)
Q Consensus 245 p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~ 324 (535)
|+++||||+|||||++|||+|++++|+. +|||+||++|+.||++||++|++|++||+++|.|+|+||++|+++|
T Consensus 77 ~~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~ 150 (196)
T 4atg_A 77 KHVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQ 150 (196)
T ss_dssp TTCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHH
Confidence 9999999999999999999999999875 9999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhChhhhHhhcccchHHHHHhhhhhh
Q 009433 325 YGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 358 (535)
Q Consensus 325 YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 358 (535)
||||+||++||++|||.+|+|+++.|++.++..-
T Consensus 151 YGAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~~ 184 (196)
T 4atg_A 151 YGALYCLSILSKNVVNTVIREHAEEYKRTIGKKK 184 (196)
T ss_dssp HHHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 2
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.91 E-value=1.5e-24 Score=176.51 Aligned_cols=67 Identities=43% Similarity=0.610 Sum_probs=65.4
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
|++||.++|++||||+||++||||+++.||+|||||++||+|+|+|||+|+||++||++|||.||++
T Consensus 4 ~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 4 GSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp SCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999974
No 3
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.72 E-value=4.5e-18 Score=143.18 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCC
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (535)
.+|+++|+++|++.|+.++|+++...|++++++++++|+++|.+||+|+||+|+|++||..||+.++ +|+|||.+
T Consensus 10 ~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g-~~lYgf~~ 84 (84)
T 2hue_C 10 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 84 (84)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTC-EEEESCC-
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999885 89999974
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.69 E-value=2.2e-17 Score=143.73 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCC
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (535)
.+|+++|+++|++.|+.++|+++...|++++|+++.+|+++|.+||+|++|+|+|++||..||+.++ +|+|||.+
T Consensus 28 ~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g-~~lYGf~~ 102 (102)
T 1id3_B 28 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 102 (102)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CCEESSCC
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999886 79999974
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.64 E-value=1.9e-16 Score=138.12 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCC
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (535)
-||.++|+++|++.|+.++++++...|++.+||++.+|+++|.+||+|++|+++|++||..||+.++ +|+|||.+
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 2yfw_B 29 GITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp -CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---------
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCcCCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999998 89999963
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.64 E-value=2.4e-16 Score=137.42 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCC
Q 009433 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (535)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (535)
||.++|+++|++.|+.++++++...|++.+||++.+|+++|.+||+|++|+++|++||..||+.++ +|+|||.+
T Consensus 30 ip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 1tzy_D 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CEEESCCC
T ss_pred CCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC-CCCcCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999986 79999963
No 7
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.21 E-value=2.8e-11 Score=98.08 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
|+.+|..+|++++++.|..++++++...|++.+++.+.+|+++|..|++|+||+|++++||..|++.
T Consensus 4 ~~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 4 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp -CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 5789999999999999999999999999999999999999999999999999999999999999873
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.3e-10 Score=101.06 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=59.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCC
Q 009433 16 IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (535)
Q Consensus 16 ~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~ 77 (535)
.|+.++|+++.+.+.+.++.++.+|+++|+++++|++|||+|++||..||+..|. |+|||+
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~-~lygf~ 120 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR-TLYGFG 120 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC-GGGGCC
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC-cCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999 999997
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.93 E-value=2.1e-09 Score=99.73 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCC
Q 009433 1 MSIVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEP 72 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEP 72 (535)
|..+|..+|.+|++.. |..++|.|+...|++.+++.+..|..+|.++++|+||+|++.+||..|+..+|.|.
T Consensus 2 ~~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~ 74 (154)
T 1f1e_A 2 AVELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEG 74 (154)
T ss_dssp --CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTT
T ss_pred cccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccccc
Confidence 6789999999999999 99999999999999999999999999999999999999999999999999988873
No 10
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.4e-10 Score=111.87 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=65.4
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCC
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~ 77 (535)
+.++|+..|+.++|+++.+.+.+.++.++.+|+++|+++++|++|+|+|++||..||+..+ .|+|||.
T Consensus 167 ~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g-r~lYGf~ 234 (235)
T 2l5a_A 167 DEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 234 (235)
T ss_dssp CCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH-HHHTTCC
T ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC-CccccCC
Confidence 4578899999999999999999999999999999999999999999999999999999999 8999997
No 11
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.87 E-value=7.8e-09 Score=83.05 Aligned_cols=67 Identities=31% Similarity=0.385 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
+.+|..+|++++++.|..+++.++...|++.+|+++..|..+|..+++|+||+|++.+||..|++.+
T Consensus 1 ~~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 1 GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999999999999999999865
No 12
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.80 E-value=1.4e-08 Score=82.03 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
..|.+|.++.|+++.++++...|.+.++.+..+|+++|..|++|++|++++.+||..|++.+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999864
No 13
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.74 E-value=1.8e-08 Score=88.89 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
.+|+.+|++||+..|..++|+++...|.+-++..+.+|+.+|..|++|+||+|++++||..|++..+-
T Consensus 7 ~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 7 EIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp ---CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999998543
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.66 E-value=5.1e-08 Score=90.50 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.+|..+|.++++..|..++|+++...|++.+|+.+.+|+.+|.++++|+||+|+|++||..|++.
T Consensus 82 ~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 82 LFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999975
No 15
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.42 E-value=7.9e-07 Score=75.65 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
.+|..+|++|+++.|- .+++.|+...|++.+|..|..+..+|..++.|+||+|++.+||..|++.++.
T Consensus 8 ~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 8 YLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp CCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred cCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 5899999999999975 6899999999999999999999999999999999999999999999985443
No 16
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.41 E-value=5.4e-07 Score=74.07 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=61.8
Q ss_pred CCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQ-SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAe-s~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.+|.++|++|.+ .++-.++|.|+...+.+.++..+..|..+|.+.++|.+|+|++.+||..|++.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999999 55877899999999999999999999999999999999999999999999985
No 17
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.37 E-value=1.1e-06 Score=72.51 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.5
Q ss_pred CCCCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 1 MSIVPKETIEVIAQSI-----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~-----Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
|-.+|+.++.++...+ |-.+.+.++..+|.+-.|.++-++.++|..++.|+||.|+++.||..|.+.++.
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 6678999999998888 888999999999999999999999999999999999999999999999998874
No 18
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.37 E-value=3.1e-07 Score=80.91 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSIGVYN---LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~Gi~~---lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
+|.+|+++.|.++ +|++++..|++-++..+.+|..++..|++|++|++++++||..|+|.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 5778888887766 99999999999999999999999999999999999999999999875
No 19
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.35 E-value=4.7e-07 Score=79.26 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=56.3
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSIGV---YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~Gi---~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
+|.+|++..|. .++++++...|++-++..+.+|..+|..|++|++|++++++||..|+|.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 57888888887 6899999999999999999999999999999999999999999999875
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.30 E-value=1.7e-06 Score=72.31 Aligned_cols=71 Identities=27% Similarity=0.328 Sum_probs=63.9
Q ss_pred CCCCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 1 MSIVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~G-------i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
|-.+|+.++.++...++ -.+.+.+|..+|.+-.|.++-.+.++|..++.|+||.|+++.||..|.+.++..
T Consensus 1 ~lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 1 MLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 67789999888777776 458999999999999999999999999999999999999999999999998864
No 21
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=3.9e-06 Score=71.28 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=52.5
Q ss_pred HHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSI----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~----Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
+|..|+++. |+ +++++++..|++-++..+.+|..++..|++|++|++++++||..|+|.
T Consensus 17 ~V~ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 355566655 55 599999999999999999999999999999999999999999999875
No 22
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.05 E-value=3.7e-06 Score=76.47 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=52.1
Q ss_pred HHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSI----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~----Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
+|..|++.. |+ +++++++..|++-++..+.+|..++..|++|++|++++++||..++|.
T Consensus 24 ~VgkIvee~~~~~~~-~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 24 TTGALAQDVAEDKGV-LFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 344555544 55 499999999999999999999999999999999999999999999985
No 23
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.01 E-value=1.6e-05 Score=75.30 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
.+|.++|.+|+++.+- .+++.|+...|++.++..|..|..+|.++++|.+|+||+.+||-.||+.++.+
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 4899999999999973 68999999999999999999999999999999999999999999999976653
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.98 E-value=1.5e-05 Score=71.83 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 3 IVPKETIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 3 ~~~~e~V~~iAes~G--i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
.+|.+.|++|.+..+ ..+++.|+...|++.+|..|..|..+|..+++|.+|++|+.+||..|++.++.
T Consensus 9 ~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f 78 (128)
T 2byk_B 9 NLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDF 78 (128)
T ss_dssp --CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 489999999999765 67899999999999999999999999999999999999999999999998775
No 25
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.90 E-value=2.6e-05 Score=66.93 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 2 SIVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 2 s~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
..+|...|++|.++-+- .+++.++...++.-+|+.+.+++++|.+.+++.||++++.+||..|++..
T Consensus 18 ~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 18 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp --CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 35899999999999876 67999999999999999999999999999999999999999999998653
No 26
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.82 E-value=3.9e-05 Score=66.37 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHcC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSIG--------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~G--------i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.+|+.++.++...+| ..+.+.+|..+|.+-.|..+-++.++|..++.|+||.|+++.||..|.+.
T Consensus 27 lIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 27 LISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred hhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 478888887777776 45789999999999999999999999999999999999999999999875
No 27
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.80 E-value=3.3e-05 Score=70.43 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 3 IVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 3 ~~~~e~V~~iAes~G-------i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
.||+.++.++...++ -.+.+.+|..+|.+..|.++-.+.++|..++.|+||.||+..||..|.+.+++.
T Consensus 61 LIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 61 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp CSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred ccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 356666666655554 457999999999999999999999999999999999999999999999999875
No 28
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.76 E-value=6.8e-05 Score=68.16 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 3 IVPKETIEVIAQSI-----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 3 ~~~~e~V~~iAes~-----Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
.||+.++.++...+ |-.+.+.++..+|.+-.|.++-++.++|..++.|+||.+|++.||..|.+.++.
T Consensus 62 LIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp CSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred hhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 47888888877777 777999999999999999999999999999999999999999999999998764
No 29
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.72 E-value=7.1e-05 Score=67.00 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||...|.++.+.- +..+++++++..||.-+||...||++.|.+.++|.+|++++++||+.|++.
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 58999999999986 999999999999999999999999999999999999999999999999973
No 30
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.72 E-value=6.9e-05 Score=66.84 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~G-i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||...|.++.+..+ ..+++++++..||.-+||...||++.|.+.++|.+|+++|++||+.|++.
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 589999999999998 78999999999999999999999999999999999999999999999973
No 31
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.68 E-value=5.2e-05 Score=70.09 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=60.1
Q ss_pred CCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 3 IVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 3 ~~~~e~V~~iAes~G-------i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
.||+.++.++...++ -.+.+.+|..+|.+..|.++-.+.++|..++.|+||.||++.||..|.+.++.
T Consensus 77 LIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 77 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp CSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 467777777766665 34789999999999999999999999999999999999999999999998765
No 32
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.65 E-value=0.0012 Score=67.11 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=92.5
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhH
Q 009433 248 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGA 327 (535)
Q Consensus 248 ~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGA 327 (535)
.+++|+..++|.++.++.... ....++.|..|..|+.+|..++..+|. .+-+.++..+...|.| .....+++|
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d--~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~--~~~~~r~aa 386 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQD--ENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKN--PDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--SSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTC--SSHHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhcc--cccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 456788899998877753221 112457899999999999999999984 4557788888788765 467889999
Q ss_pred HHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009433 328 IQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 386 (535)
Q Consensus 328 I~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~ 386 (535)
+.+|.+++...-...+-|+++.+...|.+.+.+ .+..+|..|..+.|.+....+..
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcccc
Confidence 999999975322223445666666666666643 34667888888888877766653
No 33
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.65 E-value=0.0001 Score=66.44 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||...|.++.+.- +..+++++++..|+.-+||...||++.|.+.++|.+|++++++||..|++.
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 58999999999985 999999999999999999999999999999999999999999999999973
No 34
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.62 E-value=9.7e-05 Score=68.12 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||...|.++.+.. +..+++++|+..||.-+||...||++.|.+.+++.+|++++++||+.|++.
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 58999999999996 999999999999999999999999999999999999999999999999973
No 35
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.56 E-value=0.00011 Score=66.51 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=61.5
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
.||...|.++.+.- +..+++++++..||.-+||...||++.|.+.++|.+|++++++||+.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 58999999999985 89999999999999999999999999999999999999999999999997
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.56 E-value=8.7e-05 Score=63.79 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.+|..-|++|.++-+- .+++.++.-.++.-+||.+.++++.|.+++++.+|++|+.+||..|++.
T Consensus 11 ~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 11 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp CCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred CCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 5899999999999765 6899999999999999999999999999999999999999999999875
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.42 E-value=0.00024 Score=64.01 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||..-|.++.+.-+. .+++.+++..||.-+||...||++.|.+.++|.+|++++++||..|++.
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 5899999999999984 4899999999999999999999999999999999999999999999974
No 38
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.37 E-value=0.0036 Score=70.42 Aligned_cols=193 Identities=13% Similarity=0.192 Sum_probs=118.9
Q ss_pred HHHHHHHHHccCCchHHHHHHHHhhhc---c------CCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCC
Q 009433 175 YFDKIRELTVSRSNSTVFKQALLSLAM---D------SGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNP 245 (535)
Q Consensus 175 Yf~kIt~all~~~~~~~r~~AL~sL~t---D------~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np 245 (535)
+...+...+ ..++...|+.|+..|.. . +.+..++|+++..+.+ .+-..-...+....++..++
T Consensus 216 ~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~-------~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 216 FIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD-------QDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC-------SSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC-------CcHHHHHHHHHHHHHHhcch
Confidence 334444433 34556677766655432 1 2233333333333222 13333333455566666655
Q ss_pred Cc--ccccchhhhHHHHHHHHhcc---------ccCCCCCC----cchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009433 246 HI--HIEPYLHQMMPSVITCLVSK---------RLGNRFSD----NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 310 (535)
Q Consensus 246 ~L--~IepYLHqLlPsvLTCll~k---------~l~~~~~~----~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL 310 (535)
.. .+.+|+..++|.++.++... .......+ ..|.+|..|+..|..++..+|. .+-+.++..+
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l 364 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLL 364 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHH
Confidence 43 36899999999998887421 10011111 5899999999999999999874 4667888888
Q ss_pred HHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh
Q 009433 311 LHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 384 (535)
Q Consensus 311 ~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g 384 (535)
.+.+.|+ ....+.+|+.+|..++...-+ .+-|+++.++..|.+.+.+ .+..+|..|..+.|.+-..++
T Consensus 365 ~~~l~~~--~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 365 KELLFHH--EWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp HHHHTCS--SHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhcCC--CHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc
Confidence 8887764 588899999999999765444 3457888888777776643 345566666666655544443
No 39
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.35 E-value=0.0004 Score=61.66 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
.+|..-|++|.++- .+..++.++...++..+||.+.+|+.+|...++..||++++.+||..|++..
T Consensus 41 ~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 41 QLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKS 107 (119)
T ss_dssp SSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcC
Confidence 48999999999863 4567999999999999999999999999999999999999999999999653
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.23 E-value=0.00067 Score=64.96 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHc-CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSI-GV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~-Gi-~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.||...|.++.+.. +. .+++++++..|+.-+||...||++.|.+.++|.||++++++||..|++.
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 58999999999987 54 5999999999999999999999999999999999999999999999973
No 41
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.22 E-value=0.0016 Score=72.11 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=116.8
Q ss_pred HHHHHH---HHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHh
Q 009433 190 TVFKQA---LLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLV 265 (535)
Q Consensus 190 ~~r~~A---L~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~-L~IepYLHqLlPsvLTCll 265 (535)
..|+.| |..|...-+ ..++|.++.++.+. +.. .+...-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 343 ~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~-l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l- 417 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEH-IKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM- 417 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHH-TTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHH-ccC--CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh-
Confidence 445544 344433333 34455555555443 322 256666666777777777655 346789999999998886
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhh----
Q 009433 266 SKRLGNRFSDNHWDLRNFVADLIASICTRFGHV--YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV---- 339 (535)
Q Consensus 266 ~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~--y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aV---- 339 (535)
.+.++.+|..|+..|+.++..++.. ....-+.++..+.+.+.|+ ....-.|..+|..+....-
T Consensus 418 --------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~ 486 (876)
T 1qgr_A 418 --------KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAAD 486 (876)
T ss_dssp --------TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred --------CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccc
Confidence 2567999999999999999987642 1233467888888888763 3445667777777765432
Q ss_pred ---------HhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhh
Q 009433 340 ---------HLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 385 (535)
Q Consensus 340 ---------r~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~ 385 (535)
...+.|+++.++..|...+......+...|..+..+.+.|..++|.
T Consensus 487 ~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 487 VADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp CTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred cccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 1347788888888877766432112335666777777777777765
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.22 E-value=0.0038 Score=69.05 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=120.2
Q ss_pred HHHHH---HHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHh
Q 009433 190 TVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLV 265 (535)
Q Consensus 190 ~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~-L~IepYLHqLlPsvLTCll 265 (535)
..|+. +|..|...-| ..++|.++.++.+. +.. .+...-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~-l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l- 420 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQN-ITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHH-TTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG-
T ss_pred cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHH-cCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc-
Confidence 45554 4444454434 45566666666554 332 256655666777888887654 456788888888877764
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhh---H
Q 009433 266 SKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV---H 340 (535)
Q Consensus 266 ~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y--~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aV---r 340 (535)
.+.++.+|+.|+..|+.++..++... ...-+.++..+.+.+.|+ ......|..+|..+....- .
T Consensus 421 --------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~ 489 (861)
T 2bpt_A 421 --------NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATP 489 (861)
T ss_dssp --------GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSS
T ss_pred --------CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccc
Confidence 24589999999999999999876432 234567888888888764 4566677778877754422 2
Q ss_pred hhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009433 341 LLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 386 (535)
Q Consensus 341 ~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~ 386 (535)
..+-|+++.++..|.+.+... ..+...|..|.+..+.+....|.-
T Consensus 490 ~~l~~~~~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 490 SPIYNFYPALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp CGGGGGHHHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred hhhHHHHHHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcchh
Confidence 446688888888877766421 123456778888888888877754
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.12 E-value=0.0066 Score=67.10 Aligned_cols=127 Identities=8% Similarity=0.087 Sum_probs=87.4
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHH
Q 009433 249 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 328 (535)
Q Consensus 249 IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI 328 (535)
+.+|+..++|.++.++-... ....++.|.+|..|+.+|..++..+|. .+-+.+...+.+.+.|+ ....+.+|+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~--~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~--~~~~r~~a~ 390 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQN--EDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITAD--NWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--CC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--cccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCC--ChhHHHHHH
Confidence 46778889998888763321 112356799999999999999999983 45567888888887654 477899999
Q ss_pred HHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhh
Q 009433 329 QGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 385 (535)
Q Consensus 329 ~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~ 385 (535)
.+|..++...-...+.|+++.++..|...+.+ .+..+|..+..+.|.+...++.
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMND---QSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhh
Confidence 99999974332233456666666666655532 3455666666666666655543
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.08 E-value=0.0088 Score=56.97 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009433 231 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 310 (535)
Q Consensus 231 L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL 310 (535)
+..+-.++..|-. .+++|+.+++|.++.++- +.+-.+|+.|+..|..++...+ + ..++..+
T Consensus 78 ~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~---------d~~~~vr~~a~~aL~~~~~~~~--~----~~ll~~l 138 (242)
T 2qk2_A 78 GKCLALLAKGLAK----RFSNYASACVPSLLEKFK---------EKKPNVVTALREAIDAIYASTS--L----EAQQESI 138 (242)
T ss_dssp HHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHTTSC--H----HHHHHHH
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHcCC--H----HHHHHHH
Confidence 3444455554422 568999999999998852 3445899999999999988543 3 3566667
Q ss_pred HHHhcCCCCCchhhhhHHHHHHhh----ChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009433 311 LHAFLDPTKSLSQHYGAIQGLAAL----GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 386 (535)
Q Consensus 311 ~k~lldp~k~l~t~YGAI~GL~aL----G~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~ 386 (535)
...|.| ++....-+++..|..+ |++ ....++++.+...|...+.+ .+..+|..|..+.+.+..++|.-
T Consensus 139 ~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~---~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 139 VESLSN--KNPSVKSETALFIARALTRTQPT---ALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHTTC--SCHHHHHHHHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHcC--CChHHHHHHHHHHHHHHHHcCCC---CccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHH
Confidence 777764 3557777777776663 333 23446666776666666643 35678999999999999999964
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.07 E-value=0.0085 Score=66.35 Aligned_cols=126 Identities=12% Similarity=0.077 Sum_probs=85.6
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHH
Q 009433 249 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 328 (535)
Q Consensus 249 IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI 328 (535)
+.+++.+++|.++..+.. .. ....+++|..|..|+.+|..++..++. .+-+.++..+...+.|+ ....+++|+
T Consensus 315 ~~~~~~~ll~~ll~~l~~-~~-~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~--~~~~r~~a~ 387 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTK-QD-ENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP--DWRYRDAAV 387 (876)
T ss_dssp HHHHHHHHHHHHHHHTTC-CC-SSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhhc-cc-ccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCC--ChHHHHHHH
Confidence 345677888877766532 11 112357899999999999999999984 44567888888887764 578899999
Q ss_pred HHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhh
Q 009433 329 QGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 384 (535)
Q Consensus 329 ~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g 384 (535)
.+|..++...-...+-|+++.++..|-..+.+ .+..+|..|..+.|.+....+
T Consensus 388 ~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhCc
Confidence 99998865322122335566666655555532 345567777777777766654
No 46
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.77 E-value=0.0029 Score=56.42 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 8 ~V~~iAes~Gi~-~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
-|..+.++++-+ .+|.++...+-..|++....|..||.+++++.||+|||..||..|.+++
T Consensus 38 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 467788888876 6999999999999999999999999999999999999999999999874
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.018 Score=56.26 Aligned_cols=124 Identities=9% Similarity=0.085 Sum_probs=87.2
Q ss_pred ccc-cchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHhcCCCCCchhh
Q 009433 248 HIE-PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--LQSRVTRTLLHAFLDPTKSLSQH 324 (535)
Q Consensus 248 ~Ie-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~--L~~RI~~tL~k~lldp~k~l~t~ 324 (535)
.++ +|...++|+++..+=. ..=.+|+.|...|..||...+..... | +.++..+...|.+ ++....
T Consensus 96 ~f~~~y~~~llp~ll~~l~d---------kk~~V~~aa~~al~~i~~~~~~~~~~~~l-~~ll~~l~~~l~~--k~~~vk 163 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKE---------KKPSVIEAIRKALLTICKYYDPLASSGRN-EDMLKDILEHMKH--KTPQIR 163 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGC---------CCHHHHHHHHHHHHHHHHHSCTTCTTCTT-HHHHHHHHHHTTC--SSHHHH
T ss_pred cccHHHHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHccccccCCcH-HHHHHHHHHHHcC--CChHHH
Confidence 367 9999999998887522 23379999999999999986431111 2 2466667777653 356889
Q ss_pred hhHHHHHHhhChhhhH--hhcccch-HHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009433 325 YGAIQGLAALGPSVVH--LLILPNL-ELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 386 (535)
Q Consensus 325 YGAI~GL~aLG~~aVr--~lllP~L-~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~ 386 (535)
.+++..|..+=..+-. ..+.|++ +.+...|...+.+ .+..+|..|..+.+++..++|..
T Consensus 164 ~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 164 MECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHH
Confidence 9998888776433321 2344566 6666666666643 36678999999999999999974
No 48
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.74 E-value=0.011 Score=56.23 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccCCchHHHHH---HHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcC--CCcc
Q 009433 174 LYFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRN--PHIH 248 (535)
Q Consensus 174 ~Yf~kIt~all~~~~~~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~N--p~L~ 248 (535)
.++..+.+.+ +..+...|.. ||..+-...++..++|.+...+.+. |...-...+.++..++.+ |.-.
T Consensus 98 ~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~-------~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 98 ACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK-------NPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHHHHHcCCCCc
Confidence 3444444443 3344455553 6666777778888888887777554 555555677777787766 4456
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 009433 249 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH 297 (535)
Q Consensus 249 IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~ 297 (535)
..+|++.++|.++.|+ .+.+|.+|+.|...|+.|++..|.
T Consensus 170 ~~~~l~~l~p~l~~~l---------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTL---------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CHHHHHHHHHHHHHHH---------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 7899999999999997 377899999999999999998875
No 49
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.66 E-value=0.0038 Score=55.86 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=56.2
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 8 ~V~~iAes~Gi~-~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
-|..+.++++-+ .+|.++...+-..|++....|..||.+++++.||+|||..||..|.+++
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 477788888876 6999999999999999999999999999999999999999999999874
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.46 E-value=0.023 Score=63.85 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=96.3
Q ss_pred HHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 009433 233 ALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLH 312 (535)
Q Consensus 233 ~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k 312 (535)
....++.++...-.-.+.+|++.++|.++.++ ..+.+..|.-|+..++.||...|......-.+|+..|.+
T Consensus 648 ~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l---------~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~ 718 (852)
T 4fdd_A 648 SSFALLGDLTKACFQHVKPCIADFMPILGTNL---------NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718 (852)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC---------CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---------CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 34445555554333478999999999888775 134679999999999999999987666666889999999
Q ss_pred HhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHH
Q 009433 313 AFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA 382 (535)
Q Consensus 313 ~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a 382 (535)
.+.+|.-+-...=.|+..|..||.. .-..+-|++..+...+-..|.. ..+...|..|.+-...|+..
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~-~~~~~~~~l~~~~~~~~~~l~~--~~d~~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYV-CPQEVAPMLQQFIRPWCTSLRN--IRDNEEKDSAFRGICTMISV 785 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHH-CHHHHGGGHHHHHHHHHHHHHT--SCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHh-CHHHhCccHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHh
Confidence 9988876666666677777777665 2234569999998888777642 12233344555555555443
No 51
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.04 E-value=0.0052 Score=56.07 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCccCHhhHHHHhhcc
Q 009433 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCM-RHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 3 ~~~~e~V~~iAes~G-i~~lsdeaa~~La~dveyrireIiqeA~Kfm-rhskR~~Lt~~DI~~AL~~~ 68 (535)
.||..-|++|.++-. +..++.++...++..+|+.|.+++..|...+ +..||++|+.+||..|++..
T Consensus 19 ~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 19 FLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 478888988887653 2469999999999999999999999999999 99999999999999999853
No 52
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.90 E-value=0.074 Score=62.22 Aligned_cols=127 Identities=11% Similarity=0.152 Sum_probs=85.4
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhh
Q 009433 246 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHY 325 (535)
Q Consensus 246 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~Y 325 (535)
.-.+.||+..|+|.++.++-. .+.+..+|+.|...++.++...|..+...-++++..|...+.++ .+.-
T Consensus 558 ~~~~~~~~~~ll~~ll~~l~~-------~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e----~~r~ 626 (1230)
T 1u6g_C 558 SFDATPYIKDLFTCTIKRLKA-------ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE----ITRL 626 (1230)
T ss_dssp CCCCHHHHHHHHHHHHHHHSC-------SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS----SHHH
T ss_pred ccchHHHHHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc----hhHH
Confidence 346789999999999988632 24566999999999999999999877777789999988887654 3566
Q ss_pred hHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009433 326 GAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 386 (535)
Q Consensus 326 GAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~ 386 (535)
+++.++..+.....+.-+-|.++.+...|...+. ..+...|.-|-.+.+.++...+..
T Consensus 627 ~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~---~~~~~~r~~a~~al~~l~~~~~~~ 684 (1230)
T 1u6g_C 627 TTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR---KNQRALKLGTLSALDILIKNYSDS 684 (1230)
T ss_dssp HHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT---SCCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHhccccc
Confidence 7887777665422111112333333333333322 234456667777777777776643
No 53
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.73 E-value=0.14 Score=59.86 Aligned_cols=187 Identities=15% Similarity=0.139 Sum_probs=112.2
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhccC---C-------cccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCC
Q 009433 176 FDKIRELTVSRSNSTVFKQALLSLAMDS---G-------LHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNP 245 (535)
Q Consensus 176 f~kIt~all~~~~~~~r~~AL~sL~tD~---g-------L~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np 245 (535)
+..+.+.+.+ .|...|..|++.|.+.- . ...++|.++..+.+. +...-..-++.+..|...
T Consensus 8 l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-------~~~vR~~A~~~L~~l~~~- 78 (1230)
T 1u6g_C 8 ISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-------NGEVQNLAVKCLGPLVSK- 78 (1230)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHh-
Confidence 3444454544 45667887877665431 1 123455555544432 333222233344455542
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHHhcCCCC
Q 009433 246 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV------YQNLQSRVTRTLLHAFLDPTK 319 (535)
Q Consensus 246 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~------y~~L~~RI~~tL~k~lldp~k 319 (535)
+ =++|+.++++.++.++. +++-.+|..|+..|+.|+..++.. .....+.++..|.+.+.| ..
T Consensus 79 -~-~~~~~~~i~~~Ll~~l~---------d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~ 146 (1230)
T 1u6g_C 79 -V-KEYQVETIVDTLCTNML---------SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QE 146 (1230)
T ss_dssp -S-CHHHHHHHHHHHHHHTT---------CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CS
T ss_pred -C-CHHHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CC
Confidence 1 12688888888888752 233478999999999999988764 123456788888888765 34
Q ss_pred CchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 009433 320 SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCV 387 (535)
Q Consensus 320 ~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~ 387 (535)
......||+..|..+-... ...+.|+++.++..+.+.+.. .+..+|..|.+..+.+....+.-+
T Consensus 147 ~~~~~~~al~~l~~~~~~~-~~~l~~~~~~ll~~l~~~L~~---~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 147 DVSVQLEALDIMADMLSRQ-GGLLVNFHPSILTCLLPQLTS---PRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHT-CSSCTTTHHHHHHHHGGGGGC---SSHHHHHHHHHHHHHHTTTC----
T ss_pred chHHHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhcCHHH
Confidence 5678889998888763221 124668888888888777753 234567777777777666655433
No 54
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=95.62 E-value=0.031 Score=53.40 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=54.9
Q ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~Gi-~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
-|..+.++++- ..+|+++...|...+...+..|..||.+++++.+|+++|..||..|.+.
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 36777788765 5699999999999999999999999999999999999999999999985
No 55
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.53 E-value=0.1 Score=54.58 Aligned_cols=170 Identities=15% Similarity=0.242 Sum_probs=98.7
Q ss_pred cCCchHHHHHHHHhhhcc-------CCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhH
Q 009433 185 SRSNSTVFKQALLSLAMD-------SGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 257 (535)
Q Consensus 185 ~~~~~~~r~~AL~sL~tD-------~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLl 257 (535)
...+...|+.|...|..= ..+..++|.|...+.+. +-..-...+.....++.+ +..+.+...++
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~-------~~~Vr~~a~~~l~~l~~~--~~~~~~~~~~l 404 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE-------CPEVRLNIISNLDCVNEV--IGIRQLSQSLL 404 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS-------CHHHHHHHHTTCHHHHHH--SCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 334455666655544331 11345777777777654 111111111111112111 11234556788
Q ss_pred HHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh---
Q 009433 258 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL--- 334 (535)
Q Consensus 258 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL--- 334 (535)
|.++.++ .+.+|.+|..++..|..+++.+|..+ ..+.+...+.+.|.|+. ...+..|+.+|..+
T Consensus 405 p~l~~~~---------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 405 PAIVELA---------EDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHV--YAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHH---------TCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh---------cCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHH
Confidence 8887764 25789999999999999999988753 34678888888888764 34556666666554
Q ss_pred -ChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009433 335 -GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 386 (535)
Q Consensus 335 -G~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~ 386 (535)
|++-....++|.|... + +..+...|..+-.+.+.+..++|..
T Consensus 472 ~~~~~~~~~llp~l~~~-------~---~~~~~~~R~~a~~~l~~l~~~~~~~ 514 (588)
T 1b3u_A 472 FGKEWAHATIIPKVLAM-------S---GDPNYLHRMTTLFCINVLSEVCGQD 514 (588)
T ss_dssp HCHHHHHHHTHHHHHHT-------T---TCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHH-------h---hCCCHHHHHHHHHHHHHHHHhcCHH
Confidence 5543333445543321 1 1234566777888888887777653
No 56
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.26 E-value=0.097 Score=54.82 Aligned_cols=176 Identities=11% Similarity=0.133 Sum_probs=98.0
Q ss_pred HccCCchHHHHHHHHhhh---ccCC----cccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhh
Q 009433 183 TVSRSNSTVFKQALLSLA---MDSG----LHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQ 255 (535)
Q Consensus 183 ll~~~~~~~r~~AL~sL~---tD~g----L~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHq 255 (535)
++...++..|..|+..|. ..-| ...++|.+..++.+. ++..-...+..+..+... +.-+.+...
T Consensus 371 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~-------~~~vr~~~~~~l~~l~~~--~~~~~~~~~ 441 (588)
T 1b3u_A 371 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA-------KWRVRLAIIEYMPLLAGQ--LGVEFFDEK 441 (588)
T ss_dssp HHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS-------SHHHHHHHHHHHHHHHHH--HCGGGCCHH
T ss_pred HhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC-------CchHHHHHHHHHHHHHHH--cCHHHHHHH
Confidence 344455667776665443 2222 345677777665443 443333333444443321 111233456
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 256 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 256 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
++|.++.++ .+.+|.+|+.|+..++.++..+|... ....++..+.+.+.|+ +...+-.++.++..++
T Consensus 442 l~~~l~~~l---------~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~--~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 442 LNSLCMAWL---------VDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDP--NYLHRMTTLFCINVLS 508 (588)
T ss_dssp HHHHHHHGG---------GCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHH
Confidence 788776653 35679999999999999999998642 3456666666655443 4556667777776665
Q ss_pred hhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 009433 336 PSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 386 (535)
Q Consensus 336 ~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~ 386 (535)
...-... +++.++..|...+. ..+..+|..+.+..+.+...+|.-
T Consensus 509 ~~~~~~~---~~~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 509 EVCGQDI---TTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HHHHHHH---HHHHTHHHHHHGGG---CSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred HhcCHHH---HHHHHHHHHHhhCC---CCCchHHHHHHHHHHHHHHHhchh
Confidence 4321111 11222222222222 234567777888888877766654
No 57
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.25 E-value=0.1 Score=42.85 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi-~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
++++..+....+++.- ..+++++...|.+-+...+..++..|.++++|-|-.+|.+.||...|+-
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 5778888888877754 4599999999999999999999999999999999999999999999975
No 58
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=94.99 E-value=0.1 Score=44.03 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHhhHHHHhhccC
Q 009433 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH-RTVLTANDVDSALNLRN 69 (535)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrhsk-R~~Lt~~DI~~AL~~~n 69 (535)
|-+++..||.+..++--..++++++..++--....+-||+++|.++|.+-. +.-|.+.||..|.+.+.
T Consensus 15 s~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 15 SAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 358999999999888777899999999999999999999999999999875 44899999999988754
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.82 E-value=0.088 Score=53.32 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=70.0
Q ss_pred HHHHH---HHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHh
Q 009433 190 TVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLV 265 (535)
Q Consensus 190 ~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~-L~IepYLHqLlPsvLTCll 265 (535)
..|+. +|..|...-| ..++|.++.++.+. +.. .+...-...+..+.++..... =.+.+|+.+++|.++.++
T Consensus 343 ~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~-l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l- 417 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEH-IKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM- 417 (462)
T ss_dssp SHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHH-TTC--SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG-
T ss_pred hHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH-hcC--CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-
Confidence 34554 4455555555 56777777777655 432 367777777888888888665 357899999999988886
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHHHHhCC
Q 009433 266 SKRLGNRFSDNHWDLRNFVADLIASICTRFGH 297 (535)
Q Consensus 266 ~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~ 297 (535)
.+.|+.+|..|+..|+.+|..++.
T Consensus 418 --------~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 418 --------KDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp --------GCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred --------cCCCHHHHHHHHHHHHHHHHhccc
Confidence 246789999999999999998876
No 60
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.081 Score=51.91 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=57.0
Q ss_pred HHHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 7 ETIEVIAQSIG----VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 7 e~V~~iAes~G----i~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
.-|+.||+... --+...+|..+|-+-.|.++-.+.+++.-|+.|+||-|+++.||..|.+.++.
T Consensus 19 RLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 19 RLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 34677888754 23788999999999999999999999999999999999999999999999875
No 61
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.87 E-value=1.8 Score=41.94 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCccc--ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHH
Q 009433 227 NFSLLFALMRVARSLLRNPHIHI--EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQS 304 (535)
Q Consensus 227 nl~~L~~Lmrmv~ALl~Np~L~I--epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~ 304 (535)
|.......+.++.+++.+-.... ..+....+..++..++.|.++.. .=.+|+.|...+..++...+.. .
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~----k~~~~~~a~~~l~~~~~~~~~~-----~ 138 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS----RATTKTQSMSCILSLCGLDTSI-----T 138 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHHTSSSS-----H
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHhcCcH-----H
Confidence 67777777888888887644432 33345566677777777766542 2378999988888888654432 2
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHHHHHH----hhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009433 305 RVTRTLLHAFLDPTKSLSQHYGAIQGLA----ALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 380 (535)
Q Consensus 305 RI~~tL~k~lldp~k~l~t~YGAI~GL~----aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl 380 (535)
.+...+...+. +++....-+++..|. .+|...+.. -|.++.+.+.+-..+. ..|..+|.+|..+.+.+.
T Consensus 139 ~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~--k~~l~~i~~~l~k~l~---d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 139 QSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNV--QTFLPELLKHVPQLAG---HGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHGGGHHHHHT---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCc--hhHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHH
Confidence 35556666664 567777777776654 346554321 1234444444444443 357889999999999999
Q ss_pred HHhhhhh
Q 009433 381 CAAGLCV 387 (535)
Q Consensus 381 ~a~g~~~ 387 (535)
.-+|...
T Consensus 212 ~~~G~~~ 218 (278)
T 4ffb_C 212 KVTGNNS 218 (278)
T ss_dssp TC-----
T ss_pred HHhCcch
Confidence 9998654
No 62
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.83 E-value=0.54 Score=43.82 Aligned_cols=142 Identities=9% Similarity=0.070 Sum_probs=82.3
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhc-----cCCc-----ccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhc-C
Q 009433 176 FDKIRELTVSRSNSTVFKQALLSLAM-----DSGL-----HPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLR-N 244 (535)
Q Consensus 176 f~kIt~all~~~~~~~r~~AL~sL~t-----D~gL-----~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~-N 244 (535)
|+.+++.+-+. +...+..|+..|+. ++.. ...+|.|+.++... +..........+..|.. |
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIASGG 85 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCC
Confidence 55555544443 33345555554432 2211 13567777777665 44445555666666665 3
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcCCCCCchh
Q 009433 245 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQ 323 (535)
Q Consensus 245 p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~-y~~L~~RI~~tL~k~lldp~k~l~t 323 (535)
+...-.-.-...+|.++.++- ++++.+|..|+..|+.|+...... -.-+...++..|.+.+.++ +...
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v 154 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQI 154 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHH
Confidence 332211111246777766652 235799999999999997633221 1123334677888888764 5567
Q ss_pred hhhHHHHHHhhCh
Q 009433 324 HYGAIQGLAALGP 336 (535)
Q Consensus 324 ~YGAI~GL~aLG~ 336 (535)
..-|+.+|..|..
T Consensus 155 ~~~a~~~L~~l~~ 167 (252)
T 4db8_A 155 LQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc
Confidence 7888888888854
No 63
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.40 E-value=1 Score=43.68 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=72.8
Q ss_pred HHHHHHHHHHc---cCCchHHHH---HHHHhhhccC------C-cccccchhhhhhhchhhhcccCChHHHHHHHHHHHH
Q 009433 174 LYFDKIRELTV---SRSNSTVFK---QALLSLAMDS------G-LHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARS 240 (535)
Q Consensus 174 ~Yf~kIt~all---~~~~~~~r~---~AL~sL~tD~------g-L~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~A 240 (535)
.|...+.-.++ ++.....+. .||..+-... + +..+++.+..++... |...-...+.++.+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-------~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-------TPQIRMECTQLFNA 172 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-------ChHHHHHHHHHHHH
Confidence 56555555543 333333433 3666655543 3 666666666555433 55454556667777
Q ss_pred hhcCCC---cccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCC
Q 009433 241 LLRNPH---IHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV 298 (535)
Q Consensus 241 Ll~Np~---L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~ 298 (535)
++.+-. -.+.+|+ -+++|.+..|+ .+..-.+|+.|..+|+.||+..|..
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l---------~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIV---------NDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHH---------TCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 776654 3577899 99999999998 2446689999999999999999973
No 64
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.40 E-value=0.91 Score=37.87 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 3 IVPKETIEVIAQSIGVY----NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi~----~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
-||+++|.+|.. ..+. ++++|+.+.+++.++-.++|.+..|..-++-.....|..+|++..+-
T Consensus 12 ~i~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 12 GFRKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp CCCHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 489999999999 6664 79999999999999999999999999988877888999999998764
No 65
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.44 E-value=3.2 Score=41.37 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHHHh----hcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchh
Q 009433 227 NFSLLFALMRVARSL----LRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN 301 (535)
Q Consensus 227 nl~~L~~Lmrmv~AL----l~Np~L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~ 301 (535)
|...+...+.++.+| .. ....+..| .-.++|.+ +.|- | +..=.+|+.+-.++..++.-|+.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~-~~y~~~~~ea~~~lP~L----veKl-G----d~k~~vR~~~r~il~~l~~v~~~---- 165 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRD-TETPMSQEEVSAFVPYL----LLKT-G----EAKDNMRTSVRDIVNVLSDVVGP---- 165 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHH----HHGG-G----CSSHHHHHHHHHHHHHHHHHHCH----
T ss_pred CHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHH----HHHh-C----CChHHHHHHHHHHHHHHHHHCCH----
Confidence 544444444444444 33 34555556 35666654 4443 2 33347999999999999987753
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh----ChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHH
Q 009433 302 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL----GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYG 377 (535)
Q Consensus 302 L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL----G~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~ 377 (535)
.++...+...|. +|+.-+.-|.+.-+..+ |... .-.++-.+ .|-..+ ...|..+|.-|..|..
T Consensus 166 --~~v~~~l~~g~k--sKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~----~ia~ll---~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 166 --LKMTPMLLDALK--SKNARQRSECLLVIEYYITNAGISP--LKSLSVEK----TVAPFV---GDKDVNVRNAAINVLV 232 (266)
T ss_dssp --HHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHH----HHGGGG---GCSSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHhcCCCc--cccccchH----HHHHHH---cCCCHHHHHHHHHHHH
Confidence 468888888885 67888888887766654 4431 11110002 222222 2357789999999999
Q ss_pred HHHHHhhhhhhhhhhh
Q 009433 378 ALQCAAGLCVYDRLKT 393 (535)
Q Consensus 378 aLl~a~g~~~~~~~~~ 393 (535)
.+..-+|.-++..+..
T Consensus 233 e~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 233 ACFKFEGDQMWKAAGR 248 (266)
T ss_dssp HHHHHHTTHHHHHHCC
T ss_pred HHHHHhhHHHHHHHhc
Confidence 9999999988877643
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=89.66 E-value=12 Score=35.50 Aligned_cols=131 Identities=12% Similarity=0.026 Sum_probs=76.0
Q ss_pred HHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHH
Q 009433 179 IRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMP 258 (535)
Q Consensus 179 It~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlP 258 (535)
+++.+ ..++...|..|+..|..-. -...+|.++..+.+. +...-. ..+++|-.=.. -...+..+++
T Consensus 28 L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~-------~~~vR~---~A~~aL~~l~~--~~~~~~~l~~ 93 (280)
T 1oyz_A 28 LFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDK-------NYIRRD---IGAFILGQIKI--CKKCEDNVFN 93 (280)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCS-------SHHHHH---HHHHHHHHSCC--CTTTHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCC-------CHHHHH---HHHHHHHHhcc--ccccchHHHH
Confidence 34433 4456667777777776543 234566666666554 222211 23334422110 1223334555
Q ss_pred HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009433 259 SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 337 (535)
Q Consensus 259 svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 337 (535)
.+...++ .+.++.+|..|+..|+.++.... ...+.+...|.+.+.|+ .....+.|+.+|..+|..
T Consensus 94 ~L~~~~~--------~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 94 ILNNMAL--------NDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK--STNVRRATAFAISVINDK 158 (280)
T ss_dssp HHHHHHH--------HCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---
T ss_pred HHHHHHh--------cCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCH
Confidence 4432222 24578999999999999986542 23457788888888765 467889999999999874
No 67
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=89.26 E-value=1.1 Score=40.65 Aligned_cols=141 Identities=10% Similarity=0.090 Sum_probs=80.4
Q ss_pred HHHHHHHHHccCCchHHHHHHH---Hhhhc-cCCc------ccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhc-
Q 009433 175 YFDKIRELTVSRSNSTVFKQAL---LSLAM-DSGL------HPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLR- 243 (535)
Q Consensus 175 Yf~kIt~all~~~~~~~r~~AL---~sL~t-D~gL------~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~- 243 (535)
+|..+...+ ..++...+..|+ ..|.. ++.. ...+|.++.++.+. +.......+..+..|..
T Consensus 13 ~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 13 ELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIASG 84 (210)
T ss_dssp CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC
Confidence 444455443 444555555544 44442 2211 14567777777654 44555556666666764
Q ss_pred CCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCch
Q 009433 244 NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLS 322 (535)
Q Consensus 244 Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tL~k~lldp~k~l~ 322 (535)
|+...-.-.-+..+|.++.++- +.+..+|..|+..|..|+....... .-+...++..|.+.+.++ +..
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~ 153 (210)
T 4db6_A 85 GNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQ 153 (210)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHc---------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHH
Confidence 3332211222457888888752 2347999999999999985211100 112344667788887754 456
Q ss_pred hhhhHHHHHHhh
Q 009433 323 QHYGAIQGLAAL 334 (535)
Q Consensus 323 t~YGAI~GL~aL 334 (535)
...-|+.+|..|
T Consensus 154 v~~~a~~aL~~l 165 (210)
T 4db6_A 154 ILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777777776
No 68
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=89.26 E-value=0.25 Score=40.40 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA 51 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrhs 51 (535)
.-|..|+...|++++++|++..++-.+|.|+|.+++.-+..+.|-
T Consensus 10 kri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 10 RRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp HHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999999999988877774
No 69
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=89.24 E-value=1.6 Score=40.00 Aligned_cols=112 Identities=9% Similarity=0.035 Sum_probs=69.3
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcC-CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRN-PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 285 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~N-p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 285 (535)
..+|.++.++.+. +..........+..|..+ +...-.-.-+..+|.++.++- ++...+|..|+
T Consensus 44 g~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---------~~~~~v~~~a~ 107 (252)
T 4hxt_A 44 GGVEVLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAA 107 (252)
T ss_dssp THHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSSHHHHHHHH
T ss_pred CCHHHHHHHHhCC-------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHH
Confidence 3567777777654 455555566677777765 322222222346777777652 23579999999
Q ss_pred HHHHHHHHHhCCC-chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009433 286 DLIASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 286 ~lL~~I~~~~~~~-y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 336 (535)
..|..++...... -.-+...++..+.+.+.+++ ......|+.+|..|..
T Consensus 108 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 108 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHc
Confidence 9999999521110 01122245677788876544 6678888888888843
No 70
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=89.05 E-value=1.4 Score=36.51 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 3 IVPKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi----~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
-+|+++|.+|.+. .. ++++++|.+.+++.++-.++|.+..|..-++-..-..|..+|++..+-
T Consensus 8 ~~~~~lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 8 GFRKETVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp CCCHHHHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHH
Confidence 4899999999987 43 479999999999999999999999999998877888999999998764
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.83 E-value=13 Score=33.33 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=18.6
Q ss_pred cCCchHHHHHHHHhhhccCCcccccchhhhhhhch
Q 009433 185 SRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEE 219 (535)
Q Consensus 185 ~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~ 219 (535)
...+...|..|+..|..-.. ...+|.++..+.+.
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~~ 57 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE 57 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS
T ss_pred cCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcCC
Confidence 44556666666666654322 34556666666544
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.48 E-value=3.7 Score=46.67 Aligned_cols=148 Identities=13% Similarity=0.119 Sum_probs=89.6
Q ss_pred HHHhhhccCCcccccchhhhhhhchhhhc---ccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCC
Q 009433 195 ALLSLAMDSGLHPLVPYFTYFISEEVVTR---SLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGN 271 (535)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~vV~~---nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~ 271 (535)
+|..+..--| ..++|.+..|+.+. +.. +-.++......+..+.++.....-...+++.++++ ++..+ ..
T Consensus 444 ~l~~~~~~~~-~~~l~~~~~~l~~~-l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l-----~~ 515 (971)
T 2x1g_F 444 TFMYCYDVLN-DYILEILAAMLDEA-IADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI-----PY 515 (971)
T ss_dssp HHHHHHTTCT-THHHHHHHHHHHHH-HHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS-----CT
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHH-HHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc-----Cc
Confidence 4444444444 56777888887766 432 12467777777777888887766566677777777 43332 11
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHH
Q 009433 272 RFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYL 351 (535)
Q Consensus 272 ~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~ 351 (535)
. +.|-.+|.-|..+|+.++.-++. .+..-+.++..+.+.| | .... --|...|..|- +..+..+.|+++.++
T Consensus 516 ~--d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~--~~A~~al~~l~-~~~~~~l~p~~~~ll 586 (971)
T 2x1g_F 516 E--KLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMS--AQATLGLKELC-RDCQLQLKPYADPLL 586 (971)
T ss_dssp T--TSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCH--HHHHHHHHHHH-HHCHHHHHHHHHHHH
T ss_pred c--ccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHH--HHHHHHHHHHH-HHHHHhccccHHHHH
Confidence 1 34678999999999999987664 2345567778888887 5 2222 22333344443 344566789998888
Q ss_pred Hhhhhhhh
Q 009433 352 KFLEPEML 359 (535)
Q Consensus 352 ~~Le~~l~ 359 (535)
..|...+.
T Consensus 587 ~~l~~~l~ 594 (971)
T 2x1g_F 587 NACHASLN 594 (971)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88876664
No 73
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.38 E-value=2.9 Score=47.25 Aligned_cols=136 Identities=11% Similarity=0.096 Sum_probs=89.8
Q ss_pred cccchhhhhhhchhhhc--ccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTR--SLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 284 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~--nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~A 284 (535)
.+++.+..++.+. +.. +-.++......+..+.++.....-...+++.++++ .+. .++. +|-.+|..+
T Consensus 441 ~~l~~~~~~l~~~-l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~--~l~~----~~~~vr~~~ 509 (963)
T 2x19_B 441 ELLSNLYDKLGRL-LTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIP--RISI----SNVQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHH-HHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGG--GSCC----CSHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHH--hCCC----CcHHHHHHH
Confidence 4566677777655 421 22467777777788888887765555667776666 222 2322 477899999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhh
Q 009433 285 ADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEML 359 (535)
Q Consensus 285 A~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~ 359 (535)
..+++..++-+.. .+..-+.++..+.+.|.| ....--|...|..|-.+ .+..+.|+++.+...|...+.
T Consensus 510 ~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 510 MFTIGALSEWLAD-HPVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE-CKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp HHHHHHTHHHHHH-CHHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhc
Confidence 9999999875443 234455677777777755 23444566666666544 455688999999998877664
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.78 E-value=12 Score=33.87 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009433 275 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 275 ~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 336 (535)
+.+|.+|..|+..|+.+. . +.....|.+.+.|+ .....+.|+.+|..+|.
T Consensus 123 d~~~~vr~~a~~aL~~~~----~------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIG----D------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 172 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcC----C------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 456777777777777662 1 12344455555443 35667777777777765
No 75
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=86.72 E-value=6.4 Score=39.50 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=79.5
Q ss_pred CchHHHHH---HHHhhhccC--C-----cccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccch-hh
Q 009433 187 SNSTVFKQ---ALLSLAMDS--G-----LHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQ 255 (535)
Q Consensus 187 ~~~~~r~~---AL~sL~tD~--g-----L~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYL-Hq 255 (535)
.+...++. +|..|..+. . +..++|.++..+.+. +-.........+..|..+..-.....+ ..
T Consensus 162 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 234 (450)
T 2jdq_A 162 NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS-------DTDVLADACWALSYLSDGPNDKIQAVIDAG 234 (450)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHHHCCCcHHHHHHHHcC
Confidence 34555655 445555442 2 356778777777654 445555566666677665422221111 35
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 256 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 256 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
++|.++.++- +..|.+|..|+..|+.|+........ -+...++..|.+.+.++ ....+.-|+..|..+
T Consensus 235 ~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 235 VCRRLVELLM---------HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNI 303 (450)
T ss_dssp THHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHC---------CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 7787777652 34689999999999999863221111 12224677788887765 456677888888888
Q ss_pred C
Q 009433 335 G 335 (535)
Q Consensus 335 G 335 (535)
.
T Consensus 304 ~ 304 (450)
T 2jdq_A 304 T 304 (450)
T ss_dssp T
T ss_pred H
Confidence 5
No 76
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=86.44 E-value=4.7 Score=42.27 Aligned_cols=111 Identities=11% Similarity=0.036 Sum_probs=71.9
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCC-CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNP-HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 285 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np-~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 285 (535)
..+|.++..+.+. +.......+..+..|..+. ...-..+...++|.++.++- +....+|..|+
T Consensus 215 ~~l~~L~~ll~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~ 278 (530)
T 1wa5_B 215 NAMEPILGLFNSN-------KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---------SMDTETLVDAC 278 (530)
T ss_dssp TCHHHHHHGGGSC-------CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---------CCCHHHHHHHH
T ss_pred CcHHHHHHHhccC-------CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---------CCCHHHHHHHH
Confidence 5677777777553 5566666777888888764 22224456788888877651 23468999999
Q ss_pred HHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 286 DLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 286 ~lL~~I~~~~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
..|+.++........ -+...++..|.+.+.++ .......|+..|..+.
T Consensus 279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIV 327 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHH
Confidence 999999853211111 11224566777777754 4566777888888874
No 77
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=86.40 E-value=2.7 Score=45.40 Aligned_cols=90 Identities=12% Similarity=-0.015 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhh
Q 009433 278 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPE 357 (535)
Q Consensus 278 w~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~ 357 (535)
..+|+.+...+..|+++|... +..++..|.+.+.+ ......+..+++.|..+|...- +.+.+++.+-..
T Consensus 404 ~~v~~e~i~~l~~ii~~~p~~----~~~~v~~L~~~l~~-~~~~~~~~~~~wilGey~~~~~------~~~~~l~~l~~~ 472 (591)
T 2vgl_B 404 NYVVQEAIVVIRDIFRKYPNK----YESIIATLCENLDS-LDEPDARAAMIWIVGEYAERID------NADELLESFLEG 472 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSCSS----CCTTHHHHHHTTTT-CCSHHHHHHHHHHHHTTCTTCT------THHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHCcch----HHHHHHHHHHHHHh-ccCHHHHHHHHHHHHccccccc------CHHHHHHHHHHh
Confidence 367777777888888776543 44555666666543 3334457788888888887542 334444444333
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 009433 358 MLLEKQKNEMKRHEAWRVYGALQCAAGLCVY 388 (535)
Q Consensus 358 l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~ 388 (535)
+.. |-..|..+++.|+.+++.
T Consensus 473 ~~~----------~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 473 FHD----------ESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp CSS----------SCHHHHHHHHHHHHHHHT
T ss_pred hcc----------CCHHHHHHHHHHHHHHHh
Confidence 221 122467777888877754
No 78
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=85.95 E-value=5.9 Score=41.50 Aligned_cols=131 Identities=12% Similarity=0.113 Sum_probs=79.7
Q ss_pred CchHHHHH---HHHhhhccC--C-----cccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccch-hh
Q 009433 187 SNSTVFKQ---ALLSLAMDS--G-----LHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQ 255 (535)
Q Consensus 187 ~~~~~r~~---AL~sL~tD~--g-----L~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYL-Hq 255 (535)
.+...++. +|..|..+. . ...++|.++..+.+. +.......+..+..|..++.-.++..+ ..
T Consensus 227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 299 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-------DTETLVDACWAISYLSDGPQEAIQAVIDVR 299 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 34445554 455565443 2 235677777766544 455556666777777765433333333 25
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 256 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 256 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
++|.++.++- +..|.+|..|..+|+.|+........ -+...++..|.+.|.++ ......-|+..|..+
T Consensus 300 ~v~~Lv~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 300 IPKRLVELLS---------HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNI 368 (530)
T ss_dssp CHHHHHHGGG---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHC---------CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 6777777652 24689999999999999853211101 12235667788888765 466677888888887
Q ss_pred C
Q 009433 335 G 335 (535)
Q Consensus 335 G 335 (535)
.
T Consensus 369 ~ 369 (530)
T 1wa5_B 369 T 369 (530)
T ss_dssp T
T ss_pred H
Confidence 4
No 79
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=85.59 E-value=2.2 Score=39.61 Aligned_cols=110 Identities=12% Similarity=0.154 Sum_probs=72.5
Q ss_pred ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 208 LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 208 LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
.+|.++.++.+. +.......+..+..|..++....+..+ ...+|.++.++- +.++.+|..|+.
T Consensus 97 ~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~ 160 (252)
T 4db8_A 97 ALPALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALW 160 (252)
T ss_dssp HHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHH
T ss_pred CHHHHHHHHcCC-------CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---------CCCHHHHHHHHH
Confidence 567777776654 556666677788888888766533333 357888877761 346799999999
Q ss_pred HHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 287 LIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 287 lL~~I~~~~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
.|..++........ -+...++..|.+.+.++ ......-|+..|..|.
T Consensus 161 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 161 ALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHh
Confidence 99999853211000 12233566788887765 5666777888888773
No 80
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=85.27 E-value=5.8 Score=45.30 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=93.4
Q ss_pred HHHhhhccCCcccccchhhhhhhchhhhc----ccCChHHHHHHHHHHHHhhcC------------CCcccccchh-hhH
Q 009433 195 ALLSLAMDSGLHPLVPYFTYFISEEVVTR----SLKNFSLLFALMRVARSLLRN------------PHIHIEPYLH-QMM 257 (535)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~vV~~----nl~nl~~L~~Lmrmv~ALl~N------------p~L~IepYLH-qLl 257 (535)
.|..|...-+ ..++|-+..|+.+- +.. ...|+......+.++.|+..+ +.+.+++++. .++
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~-l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~ 461 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGF-VDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIA 461 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHH-HHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTH
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhH
Confidence 4455555545 56666666666554 331 134677777777788888643 2224555543 234
Q ss_pred HHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-
Q 009433 258 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP- 336 (535)
Q Consensus 258 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~- 336 (535)
|.+ . .. ...|-.+|..|..+|+.++.-+. +..-..++..+.+.|.|+ +...+--|..+|..|-.
T Consensus 462 p~l-----~----~~-~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 462 PDL-----T----SN-NIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD--EYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHH-----H----CS-SCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTC
T ss_pred HHh-----c----CC-CCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhc
Confidence 422 1 11 13477999999999999887663 345677888888888876 45556667777776543
Q ss_pred ---------hhhHhhcccchHHHHHhhhhhhh
Q 009433 337 ---------SVVHLLILPNLELYLKFLEPEML 359 (535)
Q Consensus 337 ---------~aVr~lllP~L~~y~~~Le~~l~ 359 (535)
+.-+..+.|+++.++..|-..+.
T Consensus 527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~ 558 (960)
T 1wa5_C 527 RESNTSPAFIFHKEDISNSTEILLKNLIALIL 558 (960)
T ss_dssp BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHhhhhHHHHHHHHHHHHH
Confidence 12356788999999998877664
No 81
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=85.04 E-value=10 Score=37.94 Aligned_cols=112 Identities=10% Similarity=0.078 Sum_probs=71.8
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCC--CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNP--HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 284 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np--~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~A 284 (535)
..+|.|+.++.+. .+.......+..+..|..+. ... ..++..++|.++.++- +++..+|..|
T Consensus 149 ~~i~~L~~~l~~~------~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~l~---------~~~~~v~~~a 212 (450)
T 2jdq_A 149 NILPPLLQLFSKQ------NRLTMTRNAVWALSNLCRGKSPPPE-FAKVSPCLNVLSWLLF---------VSDTDVLADA 212 (450)
T ss_dssp TCHHHHHHHTTSC------CCHHHHHHHHHHHHHHHCCSSSCCC-GGGTGGGHHHHHHHTT---------CCCHHHHHHH
T ss_pred CCHHHHHHHhcCC------CCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHc---------cCCHHHHHHH
Confidence 4678888877642 24555666677778888664 333 3345889998888752 2346899999
Q ss_pred HHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009433 285 ADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 285 A~lL~~I~~~~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 336 (535)
+..|+.++........ -....++..|.+.+.++ .......|+..|..+..
T Consensus 213 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 213 CWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhh
Confidence 9999999852111000 11234566777777643 45667788888888743
No 82
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=84.61 E-value=4.7 Score=36.82 Aligned_cols=110 Identities=9% Similarity=0.035 Sum_probs=69.5
Q ss_pred ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 208 LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 208 LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl-~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
.+|.++.++.+. +.......+..+..|. .++...-.-.-+..+|.++.++- ++++.+|..|+.
T Consensus 87 ~i~~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~ 150 (252)
T 4hxt_A 87 GVEVLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAAR 150 (252)
T ss_dssp HHHHHHHHTTCS-------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHH
T ss_pred CHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHH
Confidence 467777766654 5566666777777777 44443222222456787777652 345899999999
Q ss_pred HHHHHHHHhCCC-chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 287 LIASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 287 lL~~I~~~~~~~-y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
.|+.++...... ..-+...++..|.+.+.++ .......|+..|..+.
T Consensus 151 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 151 ALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIA 198 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 999998632110 1112334677788887643 3567777888888774
No 83
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.30 E-value=17 Score=32.66 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=74.0
Q ss_pred HHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhh
Q 009433 177 DKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 256 (535)
Q Consensus 177 ~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqL 256 (535)
..+.+.+ ...+...|..|+..|..-.. ...+|.++..+.+. +...-. ..+++|-.-.. ...
T Consensus 22 ~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~-------~~~vr~---~a~~aL~~~~~-------~~~ 82 (211)
T 3ltm_A 22 EMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE-------DAWVRR---AAADALGQIGD-------ERA 82 (211)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS-------CHHHHH---HHHHHHHHHCC-------GGG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCC-------CHHHHH---HHHHHHHhhCC-------HHH
Confidence 4445544 44566677777777765322 45667777777654 333222 23333332221 245
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009433 257 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 257 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 336 (535)
+|.++.++ .+.++.+|..|+..|+.+.. + .....|.+.+.| ........|+.+|..+|.
T Consensus 83 ~~~L~~~l---------~~~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 83 VEPLIKAL---------KDEDGWVRQSAAVALGQIGD------E----RAVEPLIKALKD--EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHT---------TCSSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH---------cCCCHHHHHHHHHHHHHhCc------H----HHHHHHHHHHhC--CCHHHHHHHHHHHHHcCC
Confidence 66666664 24568999999999987742 2 344556666654 456788999999999986
Q ss_pred h
Q 009433 337 S 337 (535)
Q Consensus 337 ~ 337 (535)
.
T Consensus 142 ~ 142 (211)
T 3ltm_A 142 E 142 (211)
T ss_dssp G
T ss_pred H
Confidence 4
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=83.45 E-value=11 Score=33.63 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=74.9
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhh
Q 009433 176 FDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQ 255 (535)
Q Consensus 176 f~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHq 255 (535)
...+.+.+ ...+...|..|+..|..-. -...+|.++..+.+. +...-. ..+++|-.... ..
T Consensus 47 ~~~L~~~l-~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~-------~~~vr~---~a~~aL~~~~~-------~~ 107 (201)
T 3ltj_A 47 VEPLIKAL-KDEDAWVRRAAADALGQIG-DERAVEPLIKALKDE-------DGWVRQ---SAAVALGQIGD-------ER 107 (201)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCS-------SHHHHH---HHHHHHHHHCC-------GG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcCC-------CHHHHH---HHHHHHHHhCc-------HH
Confidence 44555554 4456667777776665432 224556666666544 332222 23334432211 23
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 256 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 256 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
.+|.++.++ .+.+|.+|..|+..|+.+.. +.....|.+.+.|+ .....+.|+.+|..+|
T Consensus 108 ~~~~L~~~l---------~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 108 AVEPLIKAL---------KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIG 166 (201)
T ss_dssp GHHHHHHHT---------TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---------cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 566666654 25578999999999998742 23555667777664 5678999999999998
Q ss_pred hhh
Q 009433 336 PSV 338 (535)
Q Consensus 336 ~~a 338 (535)
...
T Consensus 167 ~~~ 169 (201)
T 3ltj_A 167 GER 169 (201)
T ss_dssp SHH
T ss_pred chh
Confidence 643
No 85
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=82.99 E-value=13 Score=40.02 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=56.3
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHH
Q 009433 249 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 328 (535)
Q Consensus 249 IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI 328 (535)
.......++|.+..|+ .+.+..+|..|+..+..|++.+....+. ..++..+.+.|.| ......++|+
T Consensus 115 ~~~~~~~l~~~l~~~L---------~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~A~ 181 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCL---------KDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIAD--SNPMVVANAV 181 (591)
T ss_dssp SGGGHHHHHHHHHHHS---------SCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSC--SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---------CCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCC--CChhHHHHHH
Confidence 3345556778888886 2557899999999999999965442221 3677888888765 4578889999
Q ss_pred HHHHhhChh
Q 009433 329 QGLAALGPS 337 (535)
Q Consensus 329 ~GL~aLG~~ 337 (535)
..|..++.+
T Consensus 182 ~aL~~i~~~ 190 (591)
T 2vgl_B 182 AALSEISES 190 (591)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhh
Confidence 999999764
No 86
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.83 E-value=10 Score=35.82 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=68.8
Q ss_pred HHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhh
Q 009433 177 DKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 256 (535)
Q Consensus 177 ~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqL 256 (535)
..+.+. +..++...|..|...|..-.. ...+|.++..+.+. +...-.. .+++|-. +...-...
T Consensus 131 ~~L~~~-l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~d~-------~~~vr~~---a~~aL~~-----~~~~~~~~ 193 (280)
T 1oyz_A 131 EQSQIT-AFDKSTNVRRATAFAISVIND-KATIPLLINLLKDP-------NGDVRNW---AAFAINI-----NKYDNSDI 193 (280)
T ss_dssp HHHHHH-TTCSCHHHHHHHHHHHHTC----CCHHHHHHHHTCS-------SHHHHHH---HHHHHHH-----HTCCCHHH
T ss_pred HHHHHH-hhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHcCC-------CHHHHHH---HHHHHHh-----hccCcHHH
Confidence 344443 344566667777666654322 34667777766554 3222222 2233321 11112355
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009433 257 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 257 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 336 (535)
+|.++.++ .+.++.+|..|+..|+.+. . ++....|.+.+.|+. ....|+.+|..+|.
T Consensus 194 ~~~L~~~l---------~d~~~~vR~~A~~aL~~~~----~------~~~~~~L~~~l~d~~----vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 194 RDCFVEML---------QDKNEEVRIEAIIGLSYRK----D------KRVLSVLCDELKKNT----VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHT---------TCSCHHHHHHHHHHHHHTT----C------GGGHHHHHHHHTSSS----CCHHHHHHHHHHCC
T ss_pred HHHHHHHh---------cCCCHHHHHHHHHHHHHhC----C------HhhHHHHHHHhcCcc----HHHHHHHHHHhcCc
Confidence 66655553 2456889999999988774 1 345666677777754 56788888999887
Q ss_pred h
Q 009433 337 S 337 (535)
Q Consensus 337 ~ 337 (535)
.
T Consensus 251 ~ 251 (280)
T 1oyz_A 251 K 251 (280)
T ss_dssp G
T ss_pred h
Confidence 4
No 87
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=80.76 E-value=11 Score=39.17 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=67.6
Q ss_pred ccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHH
Q 009433 206 HPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 284 (535)
Q Consensus 206 ~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~A 284 (535)
..++|.++..+... +.......+..+..|..++.-.++..+ ..++|.++.++- +.++.+|..|
T Consensus 243 ~~~l~~L~~lL~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---------~~~~~v~~~a 306 (528)
T 4b8j_A 243 RPALPALARLIHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---------HPSPSVLIPA 306 (528)
T ss_dssp TTHHHHHHHHTTCC-------CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHH
T ss_pred HHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---------CCChhHHHHH
Confidence 34666666666543 556666667777777766544333333 256777777752 2357999999
Q ss_pred HHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 285 ADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 285 A~lL~~I~~~~~~~y-~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
+.+|+.|+....... .-+...++..|.+.|.++. ......-|+..|..|
T Consensus 307 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 307 LRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHH
Confidence 999999986211000 0122345667777776542 445566677777776
No 88
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=80.16 E-value=4.7 Score=47.17 Aligned_cols=158 Identities=9% Similarity=0.052 Sum_probs=102.9
Q ss_pred HHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcc-cccchhhhHHHHHHHHhccccCC
Q 009433 193 KQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIH-IEPYLHQMMPSVITCLVSKRLGN 271 (535)
Q Consensus 193 ~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~-IepYLHqLlPsvLTCll~k~l~~ 271 (535)
|++|-.+..--+- .+++.+...+.+. +..+-.++..+...+-.+.|+...+.-. ..+++++++|.++..+=.++.
T Consensus 434 Rd~L~~l~~l~~~-~~~~~~~~~l~~~-l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~-- 509 (1023)
T 4hat_C 434 REVLVYLTHLNVI-DTEEIMISKLARQ-IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG-- 509 (1023)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHHHHHHH-HSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS--
T ss_pred HHHHHHHhccCHH-HHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc--
Confidence 3555444332222 4555556666555 4433357888888888888999877654 679999999988876533321
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhc-------c
Q 009433 272 RFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-------L 344 (535)
Q Consensus 272 ~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~ll-------l 344 (535)
.+++-.+|+-++-+|+++++=+.. .+..-+.+++.+.+.+.|++.. ..-=|..+|..+..+.-+.++ -
T Consensus 510 --~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~--v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 510 --KDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEG--VQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp --HHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHH--HHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred --CcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 245557888999999988875432 3555667777788887765432 233366778888777655554 4
Q ss_pred cchHHHHHhhhhhhh
Q 009433 345 PNLELYLKFLEPEML 359 (535)
Q Consensus 345 P~L~~y~~~Le~~l~ 359 (535)
|++..+...+.....
T Consensus 585 p~~~~il~~l~~~~~ 599 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTA 599 (1023)
T ss_dssp CHHHHHHHTHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 788888777766543
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=80.02 E-value=17 Score=40.98 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 009433 232 FALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLL 311 (535)
Q Consensus 232 ~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~ 311 (535)
..+-++.+-+-.|+ .|+..+++.++.++- . -.+|..|+..+..+|+.++.....--+.|+..|.
T Consensus 511 ~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l~-----~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 511 FTIGALSEWLADHP-----VMINSVLPLVLHALG-----N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp HHHHHTHHHHHHCH-----HHHTTTHHHHHHHTT-----C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCH-----HHHHHHHHHHHHHhC-----C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33445555454443 577777887777751 1 2689999999999999877654444466777777
Q ss_pred HHhcCCCC---CchhhhhHHHHHHh-hC
Q 009433 312 HAFLDPTK---SLSQHYGAIQGLAA-LG 335 (535)
Q Consensus 312 k~lldp~k---~l~t~YGAI~GL~a-LG 335 (535)
+.+..+.- .....|.|+..+.. +|
T Consensus 575 ~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 575 DVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 77764332 23344666666543 44
No 90
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=79.87 E-value=14 Score=40.18 Aligned_cols=139 Identities=11% Similarity=0.107 Sum_probs=82.1
Q ss_pred HHHHHHHHHccCCchHHHHHHHH---hhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCccccc
Q 009433 175 YFDKIRELTVSRSNSTVFKQALL---SLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEP 251 (535)
Q Consensus 175 Yf~kIt~all~~~~~~~r~~AL~---sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~Iep 251 (535)
|+..|.. |+..++...|+.||+ .|.+...+..+++.|..|+.+. +...-..+.+.+..+..+= .+
T Consensus 351 ~~~~i~~-~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~-------d~e~r~~~v~~I~~la~k~----~~ 418 (618)
T 1w63_A 351 HRSTIVD-CLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSC-------EPEFKADCASGIFLAAEKY----AP 418 (618)
T ss_dssp GHHHHHH-GGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHSS----CC
T ss_pred HHHHHHH-HccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHHHh----Cc
Confidence 4455554 445566677777665 4567777888999999988764 4444444555555565531 12
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009433 252 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 331 (535)
Q Consensus 252 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL 331 (535)
-.+..++.++.++-.. +. ..++.+...+..|+++ ++.++..++..|.+.|.++...-+..-.+++.|
T Consensus 419 ~~~~~v~~ll~lL~~~--~~-------~v~~~~~~~l~~ii~~----~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wil 485 (618)
T 1w63_A 419 SKRWHIDTIMRVLTTA--GS-------YVRDDAVPNLIQLITN----SVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCI 485 (618)
T ss_dssp CHHHHHHHHHHHHHHT--GG-------GSCSSHHHHHHHHHHH----SCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc--cc-------hhHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3344455555443221 11 1233345556667766 467888888888888875433333334677777
Q ss_pred HhhChhh
Q 009433 332 AALGPSV 338 (535)
Q Consensus 332 ~aLG~~a 338 (535)
.++|...
T Consensus 486 GEy~~~i 492 (618)
T 1w63_A 486 GEYGDLL 492 (618)
T ss_dssp HHHHHHH
T ss_pred hhhHHHh
Confidence 7777543
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=79.67 E-value=3.8 Score=46.75 Aligned_cols=106 Identities=10% Similarity=0.105 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhcCCCc--ccc--cchhhhH-HHHHHHHhccc--c---CCCC---------CCcchHHHHHHHHHHH
Q 009433 229 SLLFALMRVARSLLRNPHI--HIE--PYLHQMM-PSVITCLVSKR--L---GNRF---------SDNHWDLRNFVADLIA 289 (535)
Q Consensus 229 ~~L~~Lmrmv~ALl~Np~L--~Ie--pYLHqLl-PsvLTCll~k~--l---~~~~---------~~~hw~LRd~AA~lL~ 289 (535)
......+.+..+++..+.. .+. +|+.+|+ +.++.++.-+. . ...+ .++.|.+|..|+.+|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 4455677788888776653 222 8888888 77777764321 1 1111 2356799999999999
Q ss_pred HHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 290 SICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 290 ~I~~~~~~~y-~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
.++..|+... +.+-+-|...+.+.-.+++.....+.+|+..+.++
T Consensus 387 ~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algai 432 (960)
T 1wa5_C 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 9999998322 22333333333333234555678889999999888
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=79.40 E-value=11 Score=36.29 Aligned_cols=122 Identities=17% Similarity=0.251 Sum_probs=67.4
Q ss_pred HHHHHHccCCchHHHHHHHHhh----hccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcC---CCcccc
Q 009433 178 KIRELTVSRSNSTVFKQALLSL----AMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRN---PHIHIE 250 (535)
Q Consensus 178 kIt~all~~~~~~~r~~AL~sL----~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~N---p~L~Ie 250 (535)
.+++-+++......+..|++.| ........++.+++.++.. +|-......+..+..++.+ ..+...
T Consensus 106 ~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~-------Knpkv~~~~l~~l~~~l~~fg~~~~~~k 178 (278)
T 4ffb_C 106 LLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEK-------KLPKLIAAAANCVYELMAAFGLTNVNVQ 178 (278)
T ss_dssp HHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGC-------SCHHHHHHHHHHHHHHHHHHTTTTCCHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------cCHHHHHHHHHHHHHHHHHhCCCcCCch
Confidence 3444444444444555555443 2233333344333333322 3555555555555555554 445566
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc--------hhHHHHHHHHHHHHhc
Q 009433 251 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--------QNLQSRVTRTLLHAFL 315 (535)
Q Consensus 251 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y--------~~L~~RI~~tL~k~ll 315 (535)
+.+-.+++.+..|+= +..=.+|+-|.+++..+++..|... .+|++-..+.|-+.|-
T Consensus 179 ~~l~~i~~~l~k~l~---------d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~ 242 (278)
T 4ffb_C 179 TFLPELLKHVPQLAG---------HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFA 242 (278)
T ss_dssp HHHHHHGGGHHHHHT---------CSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 667777777776651 2234899999999999999887432 4567777777666653
No 93
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=78.36 E-value=1.8 Score=50.61 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcc-hHHHHHHHHHHHHHHHHhCCCchhHHH
Q 009433 226 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNH-WDLRNFVADLIASICTRFGHVYQNLQS 304 (535)
Q Consensus 226 ~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~h-w~LRd~AA~lL~~I~~~~~~~y~~L~~ 304 (535)
.++ .-..+|.+++.+.-...+.+..--. ..|+.+++.- ..|++ -++|+.||.+|+.+++ ++.......
T Consensus 814 ~sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~~-----L~D~q~~EVRe~Aa~tLsgll~-c~~~~~~~~- 882 (997)
T 1vsy_5 814 SSN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVSN-----LYNEQFVEVRVRAASILSDIVH-NWKEEQPLL- 882 (997)
T ss_dssp CSS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTTT-----TTCSSCHHHHHHHHHHHHHHHH-SCCSHHHHH-
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHH-cCCchhhHH-
Confidence 456 5566777787777766666655433 3555555432 24778 8999999999999984 331112222
Q ss_pred HHHHHHHHHhcC---C-------CCCchhhhhHHHHHHhhChhhhHhh-cccchHHHHHhhhhhh
Q 009433 305 RVTRTLLHAFLD---P-------TKSLSQHYGAIQGLAALGPSVVHLL-ILPNLELYLKFLEPEM 358 (535)
Q Consensus 305 RI~~tL~k~lld---p-------~k~l~t~YGAI~GL~aLG~~aVr~l-llP~L~~y~~~Le~~l 358 (535)
.++..|.+.+.. . .++.....|||.||+|+=.-.=-.+ +=|.++..+..|-...
T Consensus 883 ~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~ 947 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWA 947 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHh
Confidence 455556555432 0 1233678999999999621111111 1135566666655444
No 94
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=78.10 E-value=9.5 Score=43.27 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009433 231 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 310 (535)
Q Consensus 231 L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL 310 (535)
+..+-++.+.+-.|+ .|+..++|.++.++ . + .++..|+..+..+|+.++..-..--+-|+..|
T Consensus 527 ~~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l-~-----~------~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 527 LETMGSYCNWLMENP-----AYIPPAINLLVRGL-N-----S------SMSAQATLGLKELCRDCQLQLKPYADPLLNAC 589 (971)
T ss_dssp HHHHHHTHHHHC---------CHHHHHHHHHHHH-H-----S------SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH-----HHHHHHHHHHHHHh-C-----h------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445556666666665 68888999888887 2 1 46999999999999887654333445677777
Q ss_pred HHHhcCCCCC---chhhhhHHHHHH
Q 009433 311 LHAFLDPTKS---LSQHYGAIQGLA 332 (535)
Q Consensus 311 ~k~lldp~k~---l~t~YGAI~GL~ 332 (535)
.+.+..+.-. ....|.||.-+.
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHH
Confidence 7777654322 334565555544
No 95
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=77.54 E-value=29 Score=34.45 Aligned_cols=156 Identities=11% Similarity=0.056 Sum_probs=87.2
Q ss_pred ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 208 LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 208 LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
.+|.|+..+... .+.......+..+..|+.|..-..+..+ +..+|.++.++- ..+..+|..|+.
T Consensus 125 ~l~~Ll~LL~~~------~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~---------~~d~~v~~~A~~ 189 (296)
T 1xqr_A 125 ALRKLLRLLDRD------ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---------QQVQKLKVKSAF 189 (296)
T ss_dssp HHHHHHHHHHHC------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---------SSCHHHHHHHHH
T ss_pred CHHHHHHHHccC------CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHH
Confidence 567777777642 1334444455666677766543333333 478888888762 235689999999
Q ss_pred HHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh---ChhhhHhhcccchHHHHHhhhhhhhhHh
Q 009433 287 LIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEMLLEK 362 (535)
Q Consensus 287 lL~~I~~~~~~~y~-~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~~~~ 362 (535)
+|+.++......-. -...-++..|.+.|.+++ ...+.-|+.+|..+ ++.+++.+--+. ..|...|+..+.
T Consensus 190 aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d--~~v~~~al~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~~--- 263 (296)
T 1xqr_A 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH--SPFHEHVLGALCSLVTDFPQGVRECREPE-LGLEELLRHRCQ--- 263 (296)
T ss_dssp HHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC--STHHHHHHHHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHHH---
T ss_pred HHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC--hhHHHHHHHHHHHHHhCChhHHHHHhccH-HHHHHHHHHHHH---
Confidence 99999986221111 123346677777776553 34444455555444 566666543321 123333433321
Q ss_pred hhhhhhHHH-HHHHHHHHHHHhhhhh
Q 009433 363 QKNEMKRHE-AWRVYGALQCAAGLCV 387 (535)
Q Consensus 363 ~~~~~~r~e-a~~v~~aLl~a~g~~~ 387 (535)
....+| ...+|.-...-+.+|+
T Consensus 264 ---~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 264 ---LLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp ---HHTTCGGGHHHHHHHHHHHHHHC
T ss_pred ---HccchHHHHHHHHHHHHHHHHHc
Confidence 111133 4666777777777775
No 96
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=76.76 E-value=25 Score=36.47 Aligned_cols=112 Identities=8% Similarity=0.011 Sum_probs=68.5
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 285 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 285 (535)
..+|.|+.++.+. +.......+..+..|..+..-.-+.. -+..+|+++.++- ...++.+|..|+
T Consensus 160 g~i~~L~~lL~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--------~~~~~~v~~~a~ 224 (528)
T 4b8j_A 160 GAVPIFVKLLGSS-------SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--------EHTKLSMLRNAT 224 (528)
T ss_dssp THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--------TTCCHHHHHHHH
T ss_pred CcHHHHHHHhcCC-------CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--------cCCCHHHHHHHH
Confidence 4677777777654 34444444555555554322111111 1246777776641 134689999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 286 DLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 286 ~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
.+|+.+|......-......++..|.+.+.++ ......-|+.+|..|.
T Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 99999998643333334456777888887654 4556677788887774
No 97
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.91 E-value=8.8 Score=38.10 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=46.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVE---Y-RVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dve---y-rireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
++..++..|+ .++++++..|+.... . .+.++++.|..++...++..+|.+||..|++.
T Consensus 268 l~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 268 LRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3344456677 599999999999887 2 36678888888888889999999999999985
No 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=73.26 E-value=70 Score=37.43 Aligned_cols=176 Identities=15% Similarity=0.221 Sum_probs=106.1
Q ss_pred HHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCc--ccccchhhhHHHHHHHHhccccCCC
Q 009433 195 ALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHI--HIEPYLHQMMPSVITCLVSKRLGNR 272 (535)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L--~IepYLHqLlPsvLTCll~k~l~~~ 272 (535)
++.++-...+....+|+ .++ +. +...+.+-..-..-|-.+.+|...... ..|||+-.++|.++.+.-.
T Consensus 37 ~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d------ 106 (986)
T 2iw3_A 37 EVASFLNGNIIEHDVPE--HFF-GE-LAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN------ 106 (986)
T ss_dssp HHHHHHTSSCSSSSCCH--HHH-HH-HHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC------
T ss_pred HHHHHHhccccccccch--hHH-HH-HHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC------
Confidence 56776565566667774 333 33 443333321115567788899854433 7799999999998888522
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHH
Q 009433 273 FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 352 (535)
Q Consensus 273 ~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~ 352 (535)
..=..|+-|..-+..|+..+... .+ ..++..|.+.+. ...-..+.-||+..|..|-..+ ...+-=.++.+..
T Consensus 107 ---k~~~v~~aa~~~~~~~~~~~~~~--a~-~~~~~~~~~~~~-~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p 178 (986)
T 2iw3_A 107 ---KDKEIQSVASETLISIVNAVNPV--AI-KALLPHLTNAIV-ETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIP 178 (986)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHSCGG--GH-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred ---CchHHHHHHHHHHHHHHHhCCHH--HH-HHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhc
Confidence 22379999999999999988752 23 677777777774 3335889999999998886544 2222224444444
Q ss_pred hhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009433 353 FLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV 394 (535)
Q Consensus 353 ~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~~~~~~ 394 (535)
-+...|-+.|. ++ ...-+.++..+++..-..++..|
T Consensus 179 ~~~~~~~d~k~--~v----~~~~~~~~~~~~~~~~n~d~~~~ 214 (986)
T 2iw3_A 179 VLSETMWDTKK--EV----KAAATAAMTKATETVDNKDIERF 214 (986)
T ss_dssp HHHHHTTCSSH--HH----HHHHHHHHHHHGGGCCCTTTGGG
T ss_pred chHhhcccCcH--HH----HHHHHHHHHHHHhcCCCcchhhh
Confidence 44444433221 11 12234445555555555555544
No 99
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=72.87 E-value=37 Score=39.05 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=55.0
Q ss_pred ccccchhhhHHHHHHHHhcccc----C--C-------CCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Q 009433 248 HIEPYLHQMMPSVITCLVSKRL----G--N-------RFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAF 314 (535)
Q Consensus 248 ~IepYLHqLlPsvLTCll~k~l----~--~-------~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~l 314 (535)
...+|+.+|++.++..+.-..- . . +..++.|.+|..++.+|..+|..++. .+-+-+...+.+.+
T Consensus 384 ~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l 460 (1049)
T 3m1i_C 384 IYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQI 460 (1049)
T ss_dssp GGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHh
Confidence 3456777777766555422110 0 0 01224689999999999999977653 34455666666666
Q ss_pred cCCCCCchhhhhHHHHHHhhC
Q 009433 315 LDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 315 ldp~k~l~t~YGAI~GL~aLG 335 (535)
.++..+....-+|+.++.++.
T Consensus 461 ~~~~~~W~~~eaal~algsia 481 (1049)
T 3m1i_C 461 DGSEWSWHNINTLSWAIGSIS 481 (1049)
T ss_dssp TSSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 555566778889999999884
No 100
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=72.57 E-value=3.1 Score=41.42 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
+.|+.+++..|+ .++++++..|++-++..++.+.++--|++-.+...++|.+||+..+-.
T Consensus 149 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 567799999999 599999999999999999999999999988766678999999988754
No 101
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=72.54 E-value=5.7 Score=36.28 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRV---REIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyri---reIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
-++..++..|+ .++++++..|++...-.+ ..+++.+..++...+ +++|.+||+.+++
T Consensus 182 ~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 182 ALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34555566788 599999999999877444 445555555554444 4699999999986
No 102
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=70.37 E-value=7.6 Score=34.54 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
++..++..|+. ++++++..|++...-.++++++...+.+..+ +++|.+||+.|+.
T Consensus 170 l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 170 LLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 44455566884 9999999999888877888887777777666 6899999999985
No 103
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=69.84 E-value=13 Score=33.33 Aligned_cols=140 Identities=13% Similarity=0.125 Sum_probs=77.2
Q ss_pred HHHHHHHccCCchHHHHHHH---Hhhhc-cCCc------ccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCC
Q 009433 177 DKIRELTVSRSNSTVFKQAL---LSLAM-DSGL------HPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPH 246 (535)
Q Consensus 177 ~kIt~all~~~~~~~r~~AL---~sL~t-D~gL------~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~ 246 (535)
..+.+.+ ..++...+..|+ ..|.. ++.. ...+|.++.++.+. +..........+..|..+..
T Consensus 57 ~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~ 128 (210)
T 4db6_A 57 PALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIASGGN 128 (210)
T ss_dssp HHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC-------cHHHHHHHHHHHHHHHcCCH
Confidence 3344433 334555565544 44432 2222 23678888877665 44555555666666665432
Q ss_pred cccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhh
Q 009433 247 IHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQH 324 (535)
Q Consensus 247 L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tL~k~lldp~k~l~t~ 324 (535)
-..+..+ +..+|.++.++- +.+..+|..|+..|..+|......- .-....++..|.+.+.+ .+...+
T Consensus 129 ~~~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~ 197 (210)
T 4db6_A 129 EQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQ 197 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHH
Confidence 2222222 457888877752 2356899999999999996311100 01122345667777664 344556
Q ss_pred hhHHHHHHhhC
Q 009433 325 YGAIQGLAALG 335 (535)
Q Consensus 325 YGAI~GL~aLG 335 (535)
.-|...|..|.
T Consensus 198 ~~a~~aL~~l~ 208 (210)
T 4db6_A 198 KEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 104
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=65.24 E-value=6.1 Score=31.17 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 26 a~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
...||+..+ -.|..++++|...+.+..+..++.+|+..|++.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455666555 458899999999999999999999999999975
No 105
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=65.09 E-value=14 Score=43.26 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
+|..-|.+..+..-..+++..|+-.||.-+||-.-||++-|...++..|++++++.||..|++.
T Consensus 105 ~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 105 LPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 5666677666544456899999999999999999999999999999999999999999999965
No 106
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.64 E-value=12 Score=33.52 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
++..++..|+ .++++++..|++...-..+.+.+.+.+.+..++ .++|.+||+.|+.
T Consensus 194 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~-~~i~~~~v~~~~~ 249 (250)
T 1njg_A 194 LEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT-SSBCHHHHHHHSC
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-ceecHHHHHHHhC
Confidence 3444456677 589999999998887666666666655555554 4899999999874
No 107
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=61.22 E-value=7.9 Score=30.98 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 35 yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
-.|..++++|...+.+..+..++.+|+..|++..
T Consensus 35 ADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 35 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3577899999999999999999999999999764
No 108
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=61.15 E-value=47 Score=38.19 Aligned_cols=155 Identities=8% Similarity=0.017 Sum_probs=90.7
Q ss_pred HHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhccccCCC
Q 009433 194 QALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRLGNR 272 (535)
Q Consensus 194 ~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~Ie-pYLHqLlPsvLTCll~k~l~~~ 272 (535)
++|..|..-.+ ..+++.+..++.+. +..+..++......+.++.|+...=.-..+ +|+.++++.+++. +..
T Consensus 435 ~~L~~l~~~~~-~~~l~~v~~~l~~~-l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l------~~~ 506 (1049)
T 3m1i_C 435 EVLVYLTHLNV-IDTEEIMISKLARQ-IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL------TVK 506 (1049)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHHHHHH-HTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH------TTS
T ss_pred HHHHHHHccCH-HHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH------Hhh
Confidence 34544442222 23445555555444 332234677777777777787654221212 4566777766552 111
Q ss_pred C--CCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhc-------
Q 009433 273 F--SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI------- 343 (535)
Q Consensus 273 ~--~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~ll------- 343 (535)
. .++|-.+|.-+..++++.++-+.. .+..-+.++..+.+.+.|+ +...+.-|..+|..|..+.-..++
T Consensus 507 ~~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~ 583 (1049)
T 3m1i_C 507 KRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1049)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 1 235666666688888888764433 3556667888888888765 455566677777777665433322
Q ss_pred ccchHHHHHhhhhhhh
Q 009433 344 LPNLELYLKFLEPEML 359 (535)
Q Consensus 344 lP~L~~y~~~Le~~l~ 359 (535)
-|+++.++..|...+.
T Consensus 584 ~p~~~~il~~l~~~~~ 599 (1049)
T 3m1i_C 584 EPFIQTIIRDIQKTTA 599 (1049)
T ss_dssp SCHHHHHHHTHHHHHT
T ss_pred CcHHHHHHHHHHHHHH
Confidence 2999999888876554
No 109
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=60.56 E-value=18 Score=36.07 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dve---yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvE 71 (535)
-++..++..|+. ++++++..||...+ -.+..+++.+..++.-.++.++|.+++..|+...+++
T Consensus 188 iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 188 IIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 456667778984 99999999988543 2355677778788877778899999999999987654
No 110
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=59.08 E-value=1.4e+02 Score=29.25 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcc-cc----hHHHH
Q 009433 277 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL-PN----LELYL 351 (535)
Q Consensus 277 hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lll-P~----L~~y~ 351 (535)
.-++|.+-+.++..+|++ .+.+-++++.+|...+.| ......=.+|.+...+=+-+.+.++- |+ ....|
T Consensus 66 ~~~vrk~~~~Fi~e~~~~----k~~l~~~~l~~L~~Ll~d--~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W 139 (257)
T 3gs3_A 66 NMEVRKQVVAFVEQVCKV----KVELLPHVINVVSMLLRD--NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAW 139 (257)
T ss_dssp CHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 468999999999999977 468999999999998875 34556668888888777777776542 33 45566
Q ss_pred Hhhhhh---hh-hHhhhhhhhHHHHHHHHHHHH
Q 009433 352 KFLEPE---ML-LEKQKNEMKRHEAWRVYGALQ 380 (535)
Q Consensus 352 ~~Le~~---l~-~~~~~~~~~r~ea~~v~~aLl 380 (535)
+.+..- +. .-...|..+|..+.|+...++
T Consensus 140 ~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 140 NILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 544221 11 111234555556655554433
No 111
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=53.84 E-value=29 Score=38.85 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=68.7
Q ss_pred HHHhhhccCCccc------ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccc
Q 009433 195 ALLSLAMDSGLHP------LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKR 268 (535)
Q Consensus 195 AL~sL~tD~gL~q------LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~ 268 (535)
+|..|..++.... .+|.++.++.+. +.......+..+..|..+..-. .-...++|.++..+
T Consensus 342 aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL---- 408 (780)
T 2z6g_A 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-------SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL---- 408 (780)
T ss_dssp HHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-------CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT----
T ss_pred HHHHhhcChHHHHHHHHhchHHHHHHHHcCC-------chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH----
Confidence 5566665544322 346666666543 3444445566666666655321 12356788777764
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 269 LGNRFSDNHWDLRNFVADLIASICTRFGH-VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 269 l~~~~~~~hw~LRd~AA~lL~~I~~~~~~-~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
...+|.+|..|+.+|+.|+..... ...-++...+..|.+.|.++...-...+-|+.+|..|.
T Consensus 409 -----~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 409 -----GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp -----TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -----cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 135689999999999999752100 00001112344555555543333366777888887774
No 112
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=53.34 E-value=14 Score=29.99 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=36.2
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccC
Q 009433 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (535)
Q Consensus 26 a~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~n 69 (535)
...||+..+ -.|..++++|.-.+.+..+..++.+|+..|++..-
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 455666555 45899999999999999999999999999998643
No 113
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=53.34 E-value=13 Score=30.37 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 35 yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
-.|..++++|...+.+..+..++.+|+..|++.
T Consensus 48 ADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 48 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 458889999999999888999999999999974
No 114
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=51.48 E-value=2.3e+02 Score=29.48 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=62.8
Q ss_pred HHHHHHHHccCCchHHHHHHHHhhh------ccCCccc-----ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcC
Q 009433 176 FDKIRELTVSRSNSTVFKQALLSLA------MDSGLHP-----LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRN 244 (535)
Q Consensus 176 f~kIt~all~~~~~~~r~~AL~sL~------tD~gL~q-----LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~N 244 (535)
.+++++.+-++ |.+.+..|...+| .+|-++. .+|.|++|+... ++-.....-...+..|...
T Consensus 59 i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~------~~~~lq~~Aa~aL~nias~ 131 (510)
T 3ul1_B 59 VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT------DCSPIQFESAWALTNIASG 131 (510)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT------TCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC------CCHHHHHHHHHHHHHHhcC
Confidence 35667776553 3434444443333 4554543 489999999654 1222222222233333322
Q ss_pred CCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHH-----HHHHHHHhcCCC
Q 009433 245 PHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-----TRTLLHAFLDPT 318 (535)
Q Consensus 245 p~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI-----~~tL~k~lldp~ 318 (535)
..=+-..-+ +-.+|.++.++- ..+-.+|+.|+..|+.|+.. .+..+..+ +..|...+.+++
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~---------s~~~~v~e~A~~aL~nLa~d----~~~~r~~v~~~G~i~~Ll~lL~~~~ 198 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLA---------SPHAHISEQAVWALGNIAGD----GSAFRDLVIKHGAIDPLLALLAVPD 198 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred CHHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHhC----CHHHHHHHHHcCChHHHHHHHHhcc
Confidence 111111111 236888887762 23458999999999999842 12233332 445666665443
No 115
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=50.97 E-value=23 Score=38.76 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=56.9
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHH
Q 009433 250 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQ 329 (535)
Q Consensus 250 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~ 329 (535)
..++..++|.|..|+.+ .+.+..+|..|+-.+.++++.+....+. +.+...+.+.|.| +.....++|+.
T Consensus 141 ~e~~~~l~~~v~~~l~~-------~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~ 209 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVA-------GDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLND--QHLGVVTAATS 209 (621)
T ss_dssp HHHHHHHTTHHHHHHHC-------SSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCC--CCccHHHHHHH
Confidence 44667888999988754 2557799999999999999976544431 1556666666654 55688899999
Q ss_pred HHHhhChhh
Q 009433 330 GLAALGPSV 338 (535)
Q Consensus 330 GL~aLG~~a 338 (535)
.|..+..+.
T Consensus 210 ~l~~i~~~~ 218 (621)
T 2vgl_A 210 LITTLAQKN 218 (621)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 988886543
No 116
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=50.43 E-value=75 Score=34.14 Aligned_cols=116 Identities=5% Similarity=0.026 Sum_probs=68.9
Q ss_pred CchHHHHH---HHHhhhccCCc-------ccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhh
Q 009433 187 SNSTVFKQ---ALLSLAMDSGL-------HPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 256 (535)
Q Consensus 187 ~~~~~r~~---AL~sL~tD~gL-------~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqL 256 (535)
++...+.. +|..|..+..- ...+|.++..+.+. .+........+.+..|..++......+-...
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~------~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~ 99 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT------NDVETARCTAGTLHNLSHHREGLLAIFKSGG 99 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC------CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC------CCHHHHHHHHHHHHHHhcChhhHHHHHHcCC
Confidence 34444544 44556665531 13466666666532 2444545555666677766553333333457
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCC
Q 009433 257 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 317 (535)
Q Consensus 257 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tL~k~lldp 317 (535)
+|.++.++- .....+|..|+..|..|+......-..+ +..++..|.+.|.++
T Consensus 100 i~~Lv~lL~---------~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 100 IPALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHHHHTT---------CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHh---------CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 888777752 1236899999999999998754322222 345677888888765
No 117
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=50.39 E-value=14 Score=31.24 Aligned_cols=57 Identities=19% Similarity=0.076 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009433 255 QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 332 (535)
Q Consensus 255 qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~ 332 (535)
..+|.++.++ .+.+|.+|..|+..|+.+.. ++....|.+.+.|++ ....+-|+.+|.
T Consensus 73 ~a~~~L~~~L---------~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~--~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 RAVEPLIKLL---------EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT--GFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHH---------HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC--THHHHHHHHHGG
T ss_pred HHHHHHHHHH---------cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 4466666665 14567889888888887641 345666777766543 345555655554
No 118
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=50.06 E-value=9.5 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 35 yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
-.|..++++|...+.+..+..++.+|+..|++..
T Consensus 38 ADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 38 ADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 4588899999999998888999999999999763
No 119
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=47.41 E-value=54 Score=33.47 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=63.6
Q ss_pred ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 009433 208 LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 287 (535)
Q Consensus 208 LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 287 (535)
.+|.++.++.+. +.......+..+..|..++.-. .....++|.++..+- .....+|..|+..
T Consensus 228 ~~~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~ 289 (529)
T 1jdh_A 228 GMQALGLHLTDP-------SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGI 289 (529)
T ss_dssp HHHHHHTTTTSS-------CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHhCC-------ChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 345555555433 4445555566666676654322 234577887777651 2356899999999
Q ss_pred HHHHHHHhC-CCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009433 288 IASICTRFG-HVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 335 (535)
Q Consensus 288 L~~I~~~~~-~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG 335 (535)
|+.++.... ....-.+...+..|.+.+.++.........|+..|..|.
T Consensus 290 L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp HHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 999976310 000011122345555665543444567788888888874
No 120
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=46.14 E-value=4.3e+02 Score=31.10 Aligned_cols=89 Identities=13% Similarity=0.133 Sum_probs=50.7
Q ss_pred ccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHH---hcc-ccCCCC---
Q 009433 201 MDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCL---VSK-RLGNRF--- 273 (535)
Q Consensus 201 tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCl---l~k-~l~~~~--- 273 (535)
..+.++++++++..|.... +...-...+.+-.+++++..+..++.+..+++.++.++ +.| ......
T Consensus 345 ~~~~l~~~l~~lL~~t~~~-------~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~ 417 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTHP-------SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSP 417 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTSS-------CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSST
T ss_pred ChhHHHHHHHHHHHHHhCc-------cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCc
Confidence 4555667777777666543 44433344555555777765433333444455554444 333 221100
Q ss_pred --------C-------CcchHHHHHHHHHHHHHHHHhC
Q 009433 274 --------S-------DNHWDLRNFVADLIASICTRFG 296 (535)
Q Consensus 274 --------~-------~~hw~LRd~AA~lL~~I~~~~~ 296 (535)
. ..-|.+|...+.++..||..+.
T Consensus 418 ~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 418 SCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred chhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 0 1247899999999999998763
No 121
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=45.43 E-value=53 Score=34.17 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=45.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 10 EVIAQSIGVYNLSSDVALALAPDV-EY---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 10 ~~iAes~Gi~~lsdeaa~~La~dv-ey---rireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
+..++..|+ .++++++..++... +- +...+++.|.-++...++.++|.+||..|+.+.
T Consensus 376 ~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 344455677 49999999998876 32 366677788888888899999999999999873
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=45.41 E-value=55 Score=31.97 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=49.1
Q ss_pred ChHHHHHHHHH-----cCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 5 PKETIEVIAQS-----IGVYNLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 5 ~~e~V~~iAes-----~Gi~~lsdeaa~~La~dve------yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
+.+.+..+.+. .+-..+++++++.+++... .++..+++.|..++...++.+++.+||..|+...
T Consensus 202 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 34555554442 2223688999999999888 5677889999888888888999999999999764
No 123
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=45.25 E-value=1.6e+02 Score=33.51 Aligned_cols=140 Identities=15% Similarity=0.198 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH------HhCCCchhH
Q 009433 229 SLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT------RFGHVYQNL 302 (535)
Q Consensus 229 ~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~------~~~~~y~~L 302 (535)
.......+++.+|..|+...-.--=+.-+|++|..+....- ..+ ..|..||..|++|.- -|+ .|..+
T Consensus 472 ~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~----~~~--~~k~~AA~ALArLlis~np~~~f~-~~~~~ 544 (778)
T 3opb_A 472 NCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD----IGE--PIRILGCRALTRMLIFTNPGLIFK-KYSAL 544 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CC--HHHHHHHHHHHHHHHTSCHHHHSS-SSCST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC----cch--HHHHHHHHHHHHHHhcCCHHHHcC-CCccc
Confidence 34445678888888886654333334567888777644321 011 589999999999984 233 12211
Q ss_pred HHHHHHHHHHHhc-CCCC-----------CchhhhhHHHHHHhhCh------hhhHhhcccchHHHHHhhhhhhhhHhhh
Q 009433 303 QSRVTRTLLHAFL-DPTK-----------SLSQHYGAIQGLAALGP------SVVHLLILPNLELYLKFLEPEMLLEKQK 364 (535)
Q Consensus 303 ~~RI~~tL~k~ll-dp~k-----------~l~t~YGAI~GL~aLG~------~aVr~lllP~L~~y~~~Le~~l~~~~~~ 364 (535)
-.++-|.+.|. +|.. +.-.+|-|+.+|..|-. +-+|..|+-. ..+|..|+.-|.. .
T Consensus 545 --~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s---~ 618 (778)
T 3opb_A 545 --NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLD---E 618 (778)
T ss_dssp --THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGC---S
T ss_pred --cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhC---C
Confidence 35566666655 2332 11248999999888722 3456555432 1366777766643 3
Q ss_pred hhhhHHHHHHHHHHHHH
Q 009433 365 NEMKRHEAWRVYGALQC 381 (535)
Q Consensus 365 ~~~~r~ea~~v~~aLl~ 381 (535)
+..+|..|..+...|..
T Consensus 619 n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 619 NVPLQRSTLELISNMMS 635 (778)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 56777788888777775
No 124
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=44.15 E-value=79 Score=33.98 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=60.0
Q ss_pred cchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHH
Q 009433 209 VPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLI 288 (535)
Q Consensus 209 LPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL 288 (535)
+|.++.++.+. +.......+..+..|..+..-. .....++|.++..+- ...+.+|..|+..|
T Consensus 226 l~~L~~ll~~~-------~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---------~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 226 MQALGLHLTDP-------SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGIL 287 (644)
T ss_dssp HHHHHTTTTCS-------CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---------CCCHHHHHHHHHHH
Confidence 45555554433 4555666677777777654321 234577887776642 23578999999999
Q ss_pred HHHHHHhCC-CchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 289 ASICTRFGH-VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 289 ~~I~~~~~~-~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
+.++..... .-.-++...+..|.+.+.+..........|+..|..|
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 999863100 0001112234455555544322235556666666666
No 125
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=42.27 E-value=3.5e+02 Score=29.00 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHHHccCCchHHHHHHHHhh----hccCCc-ccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhc
Q 009433 169 SKELQLYFDKIRELTVSRSNSTVFKQALLSL----AMDSGL-HPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLR 243 (535)
Q Consensus 169 SkElQ~Yf~kIt~all~~~~~~~r~~AL~sL----~tD~gL-~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~ 243 (535)
+.|.-.+.......++...++..|+.|..+| +.+|.+ ..++|++...+.+. |.......+..+..+..
T Consensus 136 ~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~-------d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 136 SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK-------NHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCC-------CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCC-------CHhHHHHHHHHHHHHHH
Confidence 3454444333334445556777788766444 445542 23333333333332 55555555666666654
Q ss_pred C-CCcccccchhhhHHHHHHHHh---ccccCCC----CCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009433 244 N-PHIHIEPYLHQMMPSVITCLV---SKRLGNR----FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 315 (535)
Q Consensus 244 N-p~L~IepYLHqLlPsvLTCll---~k~l~~~----~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~ll 315 (535)
+ |.+ ..++..++|.++..+- ....++. ...+.|.. -...++|+ +++...+.+...+...|.+.+.
T Consensus 209 ~~~~~--~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q-~~il~~L~----~l~~~~~~~~~~~~~~L~~l~~ 281 (618)
T 1w63_A 209 RSPDM--LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ-VRILRLLR----ILGRNDDDSSEAMNDILAQVAT 281 (618)
T ss_dssp SHHHH--HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH-HHHHHHHH----HHTTTCHHHHHTTHHHHHHHHH
T ss_pred hChHH--HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHH-HHHHHHHH----HhCCCCHHHHHHHHHHHHHHHh
Confidence 3 221 1234456665554332 1112211 02356653 23333333 4444445555555555555432
Q ss_pred --CCC--CCchhhhhHHHHHHhhCh
Q 009433 316 --DPT--KSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 316 --dp~--k~l~t~YGAI~GL~aLG~ 336 (535)
+.. .+....|.|+.++..+++
T Consensus 282 ~~~~~~~~~~aV~~ea~~~i~~l~~ 306 (618)
T 1w63_A 282 NTETSKNVGNAILYETVLTIMDIKS 306 (618)
T ss_dssp TSCCSSTHHHHHHHHHHHHHHHSCC
T ss_pred ccccccchHHHHHHHHHHHHHhcCC
Confidence 111 234567777777777754
No 126
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=42.13 E-value=3.2e+02 Score=28.41 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=69.7
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009433 252 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 331 (535)
Q Consensus 252 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL 331 (535)
.+.+++|.++.... +..-++|.+.+.+|+..|.+ ...+-++++.+|...|.|+ .....=.+|.+.
T Consensus 60 Ll~~fl~~il~f~~---------d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~--d~~V~K~~I~~~ 124 (386)
T 3o2t_A 60 LLDNFLDEIIAFQA---------DKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDE--NVNVVKKAILTM 124 (386)
T ss_dssp GGGGGHHHHHGGGG---------CSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---------CCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 34556666554432 33568999999999999986 4667799999998888753 445555677777
Q ss_pred HhhChhhhHhhc-ccc----hHHHHHhhhhh---hh-hHhhhhhhhHHHHHHHHHHHH
Q 009433 332 AALGPSVVHLLI-LPN----LELYLKFLEPE---ML-LEKQKNEMKRHEAWRVYGALQ 380 (535)
Q Consensus 332 ~aLG~~aVr~ll-lP~----L~~y~~~Le~~---l~-~~~~~~~~~r~ea~~v~~aLl 380 (535)
..+=+.+.+-++ -|+ ....|+.+..- +. .-...|..+|..+.|+...++
T Consensus 125 tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 125 TQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 766566665443 233 24555544221 11 112245566666666665544
No 127
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=41.03 E-value=67 Score=35.86 Aligned_cols=117 Identities=6% Similarity=0.020 Sum_probs=65.3
Q ss_pred CCchHHHHHHHH---hhhccCC-------cccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhh
Q 009433 186 RSNSTVFKQALL---SLAMDSG-------LHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQ 255 (535)
Q Consensus 186 ~~~~~~r~~AL~---sL~tD~g-------L~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHq 255 (535)
..+...+..|+. .|..+.. ....+|.++.++... .+........+.+..|..++.-.-.-.-..
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~------~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g 234 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT------NDVETARCTSGTLHNLSHHREGLLAIFKSG 234 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC------CCHHHHHHHHHHHHHHhCCchhHHHHHHcC
Confidence 345556665544 4444321 224566666666432 244444445555556665543211111134
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCC
Q 009433 256 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 317 (535)
Q Consensus 256 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tL~k~lldp 317 (535)
.+|.++.++- ..+-.+|..|+..|..||..+...-..+ ...++..|.+.|.++
T Consensus 235 ~I~~Lv~lL~---------~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 235 GIPALVNMLG---------SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred CHHHHHHHHc---------CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 6777777652 1246899999999999998754422222 234667788888764
No 128
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.54 E-value=17 Score=35.48 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CccCHhhHHHHhh
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR----TVLTANDVDSALN 66 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR----~~Lt~~DI~~AL~ 66 (535)
++.+++.-|+ .++++++..|++...-.+|++++..-+....++| ..+|.+||..++.
T Consensus 201 l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 201 LRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 3444455677 5999999999988776666655554444433333 2899999998876
No 129
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=40.47 E-value=1e+02 Score=31.28 Aligned_cols=110 Identities=5% Similarity=-0.022 Sum_probs=62.6
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
..+|.++..+... .+........+.+..|..++...-.-.-...+|.++.++- +++..+|..|+.
T Consensus 59 ~~i~~Lv~~L~~~------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~ 123 (529)
T 1jdh_A 59 QMVSAIVRTMQNT------NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG---------SPVDSVLFYAIT 123 (529)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHH
T ss_pred chHHHHHHHHhcC------CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHH
Confidence 3566666666432 2444555555666666666442111122356787777642 123689999999
Q ss_pred HHHHHHHHhCCCchhH-HHHHHHHHHHHhcCCCCCchhhhhHHHHHHh
Q 009433 287 LIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAA 333 (535)
Q Consensus 287 lL~~I~~~~~~~y~~L-~~RI~~tL~k~lldp~k~l~t~YGAI~GL~a 333 (535)
.|..+|......-..+ +..++..|.+.+.+++ .....-+..+|..
T Consensus 124 ~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQI 169 (529)
T ss_dssp HHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--HHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHH
Confidence 9999998654322222 3556778888887643 3334433334433
No 130
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=39.53 E-value=88 Score=30.30 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 17 GVYNLSSDVALALAPDVEY------R-VREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 17 Gi~~lsdeaa~~La~dvey------r-ireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
++ .+++++...|+..... | +..+++.|..++.-.+|..++.+||..|+..
T Consensus 265 ~~-~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KV-EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GC-BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 55 6999999999988765 3 5677777888888888999999999999876
No 131
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=38.55 E-value=17 Score=34.02 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCCCCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 8 TIEVIAQSIGVYNLSSD-VALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsde-aa~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
-++..++..|+. .+++ ....|+...+ ..|+.++++|...+.+.++..++.+|+..|++.
T Consensus 185 il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 185 IFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 455667788885 4444 3466776543 368899999999888888899999999999875
No 132
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=36.97 E-value=26 Score=33.28 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 26 a~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
...|+...+ ..|+.++++|...+....+..++.+|+..|++..
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 445555444 3789999999999999999999999999999753
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.82 E-value=1.4e+02 Score=28.86 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 19 YNLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 19 ~~lsdeaa~~La~dve------yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
..+++++...+++... ..+.++++.|...+...++.+++.+||..|+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4689999999998876 2466788888888887788899999999998764
No 134
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=36.77 E-value=1.2e+02 Score=35.15 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009433 255 QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 315 (535)
Q Consensus 255 qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~ll 315 (535)
+.+|++|..++..+.- .+.+=.+|..|+.++..+|+.+...-..--..|+..+...|.
T Consensus 531 ~~l~~~L~~ll~~~gl---~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGI---HNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp TTHHHHHHHHTSTTTT---TCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred hhHHHHHHHHhccccc---cCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 5677888887763211 133447899999999999999876544444557777776655
No 135
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=36.70 E-value=46 Score=27.82 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CccCHhhHHHHhh
Q 009433 3 IVPKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR-------TVLTANDVDSALN 66 (535)
Q Consensus 3 ~~~~e~V~~iAes~Gi----~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR-------~~Lt~~DI~~AL~ 66 (535)
.+|+++|-+|.. ..+ ++++.|+...+++.++-.+||.+-.|..-.+...- ..|+.+|.+.---
T Consensus 1 ~ip~~llaRIL~-~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaG 74 (88)
T 3v9r_B 1 MLSKEALIKILS-QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVG 74 (88)
T ss_dssp CCCSHHHHHHHT-TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHH
Confidence 378899999887 544 36899999999999999999999888644433222 3788888776543
No 136
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=36.63 E-value=47 Score=32.57 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
.++.+++..|+ .++++++..|++...-.++.+.+..-+....+ ..++|.+||+.++.
T Consensus 186 ~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 186 QLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCBCHHHHHHHTT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcccHHHHHHHhC
Confidence 34555577788 58999999999888777777776666665555 46799999988874
No 137
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=36.42 E-value=70 Score=34.65 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 18 VYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 18 i~~lsdeaa~~La~dve-------------yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
...+++++...|.+.-. -.+..+++.|..+++...|..++.+||..|++.
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 45799999999988653 336788999999999999999999999999954
No 138
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=35.52 E-value=2.5e+02 Score=32.75 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=76.3
Q ss_pred HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchh--------HHHH
Q 009433 234 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--------LQSR 305 (535)
Q Consensus 234 Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~--------L~~R 305 (535)
+-|..+=+-.|| +++|++|..++..- .++|-.+.+.|+..+..||.+++....+ --.-
T Consensus 524 lGry~~wl~~~~---------~~L~~vl~~L~~~l-----~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 524 VGQYPRFLKAHW---------NFLRTVILKLFEFM-----HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHTCHHHHHHCH---------HHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred HHHHHHHHhccH---------HHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 345555554443 34666666665532 2456689999999999999998753321 2345
Q ss_pred HHHHHHHHhcC-CCCCchhhhhHHHHHHh-hChh-----hhHhhcccchHHHHHhhhhhhhhH----hhhhhhhHH-HHH
Q 009433 306 VTRTLLHAFLD-PTKSLSQHYGAIQGLAA-LGPS-----VVHLLILPNLELYLKFLEPEMLLE----KQKNEMKRH-EAW 373 (535)
Q Consensus 306 I~~tL~k~lld-p~k~l~t~YGAI~GL~a-LG~~-----aVr~lllP~L~~y~~~Le~~l~~~----~~~~~~~r~-ea~ 373 (535)
|.+.+.+++.+ +.+.....|.||..+.. +|++ .++.+ +|.+..-|+.|-...... ...+..++. -..
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L-~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il 668 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDL-MQLPNMAWDTIVEQSTANPTLLLDSETVKIIANII 668 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH-THHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHH-HHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHH
Confidence 77777777642 22335567777766554 4543 33333 444444444443211000 000111211 234
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 009433 374 RVYGALQCAAGLCVYDRLK 392 (535)
Q Consensus 374 ~v~~aLl~a~g~~~~~~~~ 392 (535)
++.+++-.++|..+...+.
T Consensus 669 ~~~~~v~~~lg~~f~~~~~ 687 (1023)
T 4hat_C 669 KTNVAVCTSMGADFYPQLG 687 (1023)
T ss_dssp HHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHH
Confidence 4556666677765554443
No 139
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=35.31 E-value=4.6e+02 Score=28.34 Aligned_cols=265 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred ccCCccccCcHHHHHHHHHHHHHHccCCchHHHHHHHHhh------hccCCcccccchhhhhhhchhhhcccCChHHHHH
Q 009433 160 IRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSL------AMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFA 233 (535)
Q Consensus 160 iK~~vkh~LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL------~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~ 233 (535)
+++..+.++++|.+.|+...+.-++..-....+.-.+.-| ++-+|.++|+.++....--. -.-+..|...+.+
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~-~~f~~sD~e~vdR 240 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLE-QTFNPSDPDCVDR 240 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTT-SCCCSSCHHHHHH
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhcc-CCCCCcCHHHHHH
Q ss_pred HHHHHHHhh------cCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhC--CCchhHHHH
Q 009433 234 LMRVARSLL------RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG--HVYQNLQSR 305 (535)
Q Consensus 234 Lmrmv~ALl------~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~--~~y~~L~~R 305 (535)
++..++.=+ .+.+=+++.|..+++| .-..+......+.|.||-+ ++++.++.-.| ..-..+-+-
T Consensus 241 lI~C~~~ALP~FS~~v~StkFv~y~~~kIlP------~l~~L~e~~~~~~~kL~LL--K~lAE~s~~~~~~e~a~~~l~~ 312 (507)
T 3u0r_A 241 LLQCTRQAVPLFSKNVHSTRFVTYFCEQVLP------NLGTLTTPVEGLDIQLEVL--KLLAEMSSFCGDMEKLETNLRK 312 (507)
T ss_dssp HHHHHHHHGGGCBTTBCCHHHHHHHHHHTGG------GTTCCCCC--CCCHHHHHH--HHHHHHHTTCCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHhhcc------chhhccccccchHHHHHHH--HHHHHHccCCCccchHHHHHHH
Q ss_pred HHHHHHHHhcCCCC---------------CchhhhhHHHHHHhhChhhhHhhcc-----------cchHHHHHhhhhhhh
Q 009433 306 VTRTLLHAFLDPTK---------------SLSQHYGAIQGLAALGPSVVHLLIL-----------PNLELYLKFLEPEML 359 (535)
Q Consensus 306 I~~tL~k~lldp~k---------------~l~t~YGAI~GL~aLG~~aVr~lll-----------P~L~~y~~~Le~~l~ 359 (535)
|...|++.+=-|.. .+.-.-=-+..++.||.++-..+.= .+|-.+...++..+.
T Consensus 313 iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e~~~~~~lkdfr~RLqy~ar~~q~yik 392 (507)
T 3u0r_A 313 LFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIR 392 (507)
T ss_dssp HHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHCC--CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhh----ccCCCccccccccCcccccCCC--CccCccccccCCCCccc
Q 009433 360 LEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV----LLRPPKQSRWESNRKGMIVFPS--KRKASMDNLMLQPPVKK 433 (535)
Q Consensus 360 ~~~~~~~~~r~ea~~v~~aLl~a~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 433 (535)
.-++.-..+..++.+--..=...++....+-+-.+ +-+||.--.--+..|..+++-. ||+++..+-.-.++-|.
T Consensus 393 kL~~~~~~K~~~~~kteenk~kv~alkt~~NI~~likdlfh~pPsFk~~v~lSWk~~~~~~~~kr~~~~~~~~~~~~~~~ 472 (507)
T 3u0r_A 393 QLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWKPVQKVEIGQKRASEDTTSGSPPKKS 472 (507)
T ss_dssp HHHHHHTTCCTTGGGSHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCTTSCC-----------------------
T ss_pred HHHHHhcccchhhhcchHHHHHHHHHHHHhhHHHHHHHHhcCCCCceeeeeeeeecccccccCCCCCCccCCCCCCcccc
No 140
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=33.37 E-value=25 Score=29.56 Aligned_cols=51 Identities=24% Similarity=0.368 Sum_probs=39.0
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009433 275 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 337 (535)
Q Consensus 275 ~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 337 (535)
+.+|.+|..|+..|+.+.. ++....|.+.+.|+ .....+.|+.+|..+|..
T Consensus 53 d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSH
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcH
Confidence 4679999999999987642 34566666776654 567889999999999853
No 141
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=32.95 E-value=3.5e+02 Score=26.19 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhh
Q 009433 279 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 358 (535)
Q Consensus 279 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l 358 (535)
..|---+..|..|.+- ||.+-+-|.+-+...+.+|+ -.-..-|+-=+.+||..-.| .+.|+|+.+...|...
T Consensus 122 kikIn~~yaLeeIara----nP~l~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen~~~-yv~PfLprL~aLL~D~- 193 (253)
T 2db0_A 122 KTKINVSYALEEIAKA----NPMLMASIVRDFMSMLSSKN--REDKLTALNFIEAMGENSFK-YVNPFLPRIINLLHDG- 193 (253)
T ss_dssp HHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTTTHH-HHGGGHHHHHGGGGCS-
T ss_pred cceecHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhccCcc-ccCcchHHHHHHHcCc-
Confidence 6677777778888775 78999999999999988655 55567788889999998888 4899999998877543
Q ss_pred hhHhhhhhhhHHHH
Q 009433 359 LLEKQKNEMKRHEA 372 (535)
Q Consensus 359 ~~~~~~~~~~r~ea 372 (535)
|+++|.-|
T Consensus 194 ------deiVRaSa 201 (253)
T 2db0_A 194 ------DEIVRASA 201 (253)
T ss_dssp ------SHHHHHHH
T ss_pred ------chhhhHHH
Confidence 56666654
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.07 E-value=90 Score=29.67 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
.++.+++..|+ .++++++..|++...-.++.+++..-+..... ..+|.+||..++.
T Consensus 174 ~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 174 RLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 34455556788 49999999999988877777766665555443 4799999998875
No 143
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=29.87 E-value=1.6e+02 Score=33.57 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc--hh-H
Q 009433 227 NFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--QN-L 302 (535)
Q Consensus 227 nl~~L~~Lmrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y--~~-L 302 (535)
+........+.+..|..++.. ...-+ +-.+|+++.++-.. ....|+.||..|+.||..-.... .. .
T Consensus 508 s~~vqe~Aa~aL~NLA~d~~~-r~~Vv~~Gaip~Lv~LL~s~---------~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 508 SHNSQELIARVLNAVCGLKEL-RGKVVQEGGVKALLRMALEG---------TEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp CHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHHHSS---------CHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred CHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHccC---------CHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 334444556666777766552 22211 34689888887331 23689999999999997422111 00 0
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009433 303 QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 334 (535)
Q Consensus 303 ~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL 334 (535)
...++..|.+.| ++..+.-.++-|+.+|..|
T Consensus 578 ~~~aIppLv~LL-~~~~~~l~~~eAl~AL~NL 608 (810)
T 3now_A 578 SLDVIRPLLNLL-QQDCTALENFESLMALTNL 608 (810)
T ss_dssp HHHTHHHHHHTT-STTSCHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHh-CCCCcHHHHHHHHHHHHHH
Confidence 112566676654 4444555667788888877
No 144
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=29.82 E-value=1.1e+02 Score=30.13 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=45.2
Q ss_pred CChHHHHHHHHHc---CC--CCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 4 VPKETIEVIAQSI---GV--YNLSSDVALALAPDVE---Y---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 4 ~~~e~V~~iAes~---Gi--~~lsdeaa~~La~dve---y---rireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
++.+.+..+.+.. |. ..+++++++.+++... - ++.++++.|..++. ++.+++.+||..|+...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 3455565655543 33 3688999999998887 2 35567777777665 56789999999998765
No 145
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=29.59 E-value=56 Score=31.09 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL 65 (535)
.++.+++..|+ .++++++..|+....-.++++++..-+.... ...+|.+||..++
T Consensus 169 ~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 169 RLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 35556677788 4999999999988777777777766665543 3479999998875
No 146
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=29.06 E-value=81 Score=27.80 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009433 8 TIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT 54 (535)
Q Consensus 8 ~V~~iAes~Gi----~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~ 54 (535)
-|+.|++...- -+...++..+|-+-.|..+-.+.+++.-|+.|++|.
T Consensus 10 LVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 10 LVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp HHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 46777776532 368899999999999999999999999999999775
No 147
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=28.18 E-value=1e+02 Score=25.77 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q 009433 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREI 40 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireI 40 (535)
|+.+.++.|+.+|.-.-+ .++++-...++.++...+.-+
T Consensus 1 Mm~i~~e~v~~iA~LArL-~l~eeE~~~~~~~l~~Il~~v 39 (100)
T 3ip4_C 1 MTKVTREEVEHIANLARL-QISPEETEEMANTLESILDFA 39 (100)
T ss_dssp --CCCHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999 599998888888877655443
No 148
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=27.77 E-value=1.8e+02 Score=23.47 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCCCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPD-----VEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGD 80 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~d-----veyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~ 80 (535)
++..+|+.+|++ ..-....+.+. -+|..+.-++.|.+.+.++.. .++..||-..+ ||.+..
T Consensus 20 ~~~~lA~~~~~s--~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~-~~si~~IA~~~---------Gf~~~s 85 (108)
T 3mn2_A 20 TIEKLTALTGIS--SRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGAT-PTTVTAAALSC---------GFSNLG 85 (108)
T ss_dssp CHHHHHHHHTCC--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSS-CCCHHHHHHHT---------TCCCHH
T ss_pred CHHHHHHHHCCC--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHh---------CCCCHH
Confidence 678899999985 22334434433 367777778899999988754 58899988776 887643
No 149
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=27.50 E-value=4.3e+02 Score=27.42 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=75.5
Q ss_pred ccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 009433 208 LVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 286 (535)
Q Consensus 208 LLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 286 (535)
.+|.|+.++... +-.........+..|..+..-+...-+ +.++|.++.++- ..++.+|..|+.
T Consensus 336 ~l~~L~~LL~~~-------~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~---------~~~~~v~~~A~~ 399 (529)
T 3tpo_A 336 ALAVFPSLLTNP-------KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---------KADFKTQKAAAW 399 (529)
T ss_dssp GGGGHHHHTTCS-------SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH---------SSCHHHHHHHHH
T ss_pred cHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc---------CCCHHHHHHHHH
Confidence 456666666543 222323334444455554433333222 457888887763 335689999999
Q ss_pred HHHHHHHHhCCCch--hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh---ChhhhHhhcccchHHHHHhhhhhhhhH
Q 009433 287 LIASICTRFGHVYQ--NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEMLLE 361 (535)
Q Consensus 287 lL~~I~~~~~~~y~--~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aL---G~~aVr~lllP~L~~y~~~Le~~l~~~ 361 (535)
.|..++.......- -+..-++..|...|..++ .....-++-+|..+ |.. ++....|...++..=..+
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d--~~i~~~~L~aL~nil~~~~~------~~~~~~~~~~iee~ggl~ 471 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD--TKIIQVILDAISNIFQAAEK------LGETEKLSIMIEECGGLD 471 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHHHHHHT------TTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhHh------ccChHHHHHHHHHCCcHH
Confidence 99999864322110 112224555666665433 23333344444332 321 233344444443211111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 009433 362 KQKNEMKRHEAWRVYGALQCAAGLCVY 388 (535)
Q Consensus 362 ~~~~~~~r~ea~~v~~aLl~a~g~~~~ 388 (535)
+. .....|+-..||..-+..+.+++.
T Consensus 472 ~i-e~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 472 KI-EALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HH-TGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HH-HHHHcCCCHHHHHHHHHHHHHHCC
Confidence 11 122234445567766666777653
No 150
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.44 E-value=3e+02 Score=32.11 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=48.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHH--HHhhChhhh
Q 009433 274 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQG--LAALGPSVV 339 (535)
Q Consensus 274 ~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~G--L~aLG~~aV 339 (535)
.|.+-.+|..|+.-|+.|--.-.+..+.=-..+.+.|.+...|..+...+.|||..+ |..+|...+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~ 724 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNV 724 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTE
T ss_pred cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCce
Confidence 366789999999999999875544422122346677888888888889999999985 555676544
No 151
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=26.13 E-value=47 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhC--------------CCccCHhhHHHHhh
Q 009433 38 REIMQEAIKCMRHAH--------------RTVLTANDVDSALN 66 (535)
Q Consensus 38 reIiqeA~Kfmrhsk--------------R~~Lt~~DI~~AL~ 66 (535)
.++++.|++|+.+-+ .|-||.++|+.||+
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 357888999988764 34699999999986
No 152
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=25.52 E-value=2.2e+02 Score=27.54 Aligned_cols=48 Identities=10% Similarity=0.002 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 20 NLSSDVALALAPDVEY-----------------------RVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 20 ~lsdeaa~~La~dvey-----------------------rireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
.+++++...+++-+.. .+..+++.|.-++.-.+|..++.+||..|++.
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5899999988875531 23456777777777888999999999999975
No 153
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=24.88 E-value=6.7e+02 Score=26.95 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009433 299 YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 336 (535)
Q Consensus 299 y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~ 336 (535)
.+.+.....+.|.+.+. .+.....|=|+..|..+..
T Consensus 323 ~~~~~~~~~~~L~~~L~--~~~~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 323 EPNLLVRACNQLGQFLQ--HRETNLRYLALESMCTLAS 358 (621)
T ss_dssp CHHHHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHh
Confidence 45677777887777664 3455778988888888753
No 154
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=24.10 E-value=1.4e+02 Score=24.58 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q 009433 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREI 40 (535)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireI 40 (535)
|+ +.++.|+.+|+-.-+ .++++-...++.+++..+.-+
T Consensus 4 M~-i~~e~V~~iA~LArL-~l~eeE~~~~~~~l~~Il~~v 41 (92)
T 3kfu_G 4 ME-LSPELLRKLETLAKI-RLSPEEEALLLQDLKRILDFV 41 (92)
T ss_dssp -C-CCHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 44 899999999999999 599999888888877655443
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=23.90 E-value=2.6e+02 Score=27.20 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHH---------H---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 20 NLSSDVALALAPDV---------E---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 20 ~lsdeaa~~La~dv---------e---yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
.++++++..+++.. . .++.++++.|...+...++.+++.+||..|+...
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 68999999999988 3 4577888888888888888999999999998764
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=23.83 E-value=1.3e+02 Score=29.19 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCC
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVEY---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dvey---rireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nv 70 (535)
-++..++..|+ .++++++..|+....- .+..+++.+..++....+..++.+|+..++...++
T Consensus 192 il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 192 ILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 34556667787 5899999999984332 35566777777777777889999999999987544
No 157
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=23.82 E-value=1.2e+02 Score=30.41 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------hCCCccCHhhHHHHhhcc
Q 009433 8 TIEVIAQSIGVYNLSSDVALALAPDVE----YRVREIMQEAIKCMRH------------AHRTVLTANDVDSALNLR 68 (535)
Q Consensus 8 ~V~~iAes~Gi~~lsdeaa~~La~dve----yrireIiqeA~Kfmrh------------skR~~Lt~~DI~~AL~~~ 68 (535)
-++.+++..|+ .++++....|+...+ ..|+.++++|.....+ .....++.+|+..|++..
T Consensus 259 il~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 259 IVINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 34555666676 488999898988665 3678888887765555 334679999999999753
No 158
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.69 E-value=62 Score=33.98 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=34.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 26 a~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
...||+..+ -.|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 455666544 468899999999999999999999999999964
No 159
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=23.68 E-value=2.9e+02 Score=32.48 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009433 231 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 310 (535)
Q Consensus 231 L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL 310 (535)
+..+++.+.....++++. ..++|.++..+++-.. +|=.+|..+-.+++..+.-++ ..+.+-+.++..+
T Consensus 510 leav~~~~~~~~e~~~l~-----~~~~~~Ll~~ll~~~~------~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~l 577 (1204)
T 3a6p_A 510 LESVITQMFRTLNREEIP-----VNDGIELLQMVLNFDT------KDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHSCTTCCC-----HHHHHHHHHHHHHCCC------SCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHH
T ss_pred HHHHHHHHhccccccccc-----HHHHHHHHHHHHhCCC------CChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence 334444444444444331 1456666666554211 233699999999888776555 3577888888888
Q ss_pred HHHhcCCCC----------CchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009433 311 LHAFLDPTK----------SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 380 (535)
Q Consensus 311 ~k~lldp~k----------~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl 380 (535)
.+.+.|+.. .-..+.=|-..|..|..+.= ..++|++..+...++..+...+ .....|-..+|.||+
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~-~~L~p~~~~i~~~~~~~l~~~~---~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP-QLVLPNFDMLYNHVKQLLSNEL---LLTQMEKCALMEALV 653 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHSTT---TSCHHHHHHHHHHHH
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCcc---cccHHHHHHHHHHHH
Confidence 888876211 11234555566666766554 4578999999988877664211 033556666788876
Q ss_pred HHhhh-hhhhhhhhh--ccCCCccccccc
Q 009433 381 CAAGL-CVYDRLKTV--LLRPPKQSRWES 406 (535)
Q Consensus 381 ~a~g~-~~~~~~~~~--~~~~~~~~~~~~ 406 (535)
..+.. .-+++...+ ...+|....|.+
T Consensus 654 ~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 654 LISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 65322 124444443 346777777774
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.67 E-value=64 Score=30.15 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=35.7
Q ss_pred CCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 21 LSSDV-ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 21 lsdea-a~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+++++ ...||...+ -.|+.++++|...+.+.++.++|.+|+..|++
T Consensus 204 ~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 204 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 44443 556776655 35889999999998888888999999999874
No 161
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.61 E-value=78 Score=29.58 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 26 ALALAPDVEY----RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 26 a~~La~dvey----rireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
...+|....- .|+.++++|..++.+.+++.++.+|+..|++..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 4556665543 678889999999999999999999999999864
No 162
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=23.43 E-value=6.3e+02 Score=26.10 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=57.6
Q ss_pred cccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcCCCccccc-chhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 009433 207 PLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEP-YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 285 (535)
Q Consensus 207 qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~Np~L~Iep-YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 285 (535)
.++|.|++|+... ++-.........+..|..+..-+-.. .-+-.+|.++.++- ..+-.+|+.|+
T Consensus 119 G~ip~Lv~lL~~~------~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~---------s~~~~v~e~A~ 183 (529)
T 3tpo_A 119 GLIPKFVSFLGKT------DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA---------SPHAHISEQAV 183 (529)
T ss_dssp THHHHHHHHHTCT------TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHH
T ss_pred CCHHHHHHHHcCC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHH
Confidence 3578899888654 12333333344445555443322211 12346787777642 22458999999
Q ss_pred HHHHHHHHHhCCCchhHHHH-----HHHHHHHHhcCCCCC---chhhhhHHHHHHhh
Q 009433 286 DLIASICTRFGHVYQNLQSR-----VTRTLLHAFLDPTKS---LSQHYGAIQGLAAL 334 (535)
Q Consensus 286 ~lL~~I~~~~~~~y~~L~~R-----I~~tL~k~lldp~k~---l~t~YGAI~GL~aL 334 (535)
..|+.|+.. .+..+.. ++..|...|.++..+ ....-.+...|..+
T Consensus 184 ~aL~nLa~~----~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 184 WALGNIAGA----GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHHHHTT----CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc----CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 999999741 1223333 344566666554322 22333455555554
No 163
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=23.12 E-value=1e+02 Score=23.53 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 009433 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYR-VREIMQEA 44 (535)
Q Consensus 4 ~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyr-ireIiqeA 44 (535)
+..+.|+.+.+++|+ ++.++-...++..++-. |.+++.++
T Consensus 17 ~t~~~I~~il~aaGv-eve~~~~~~~~~~L~gk~i~elI~~~ 57 (58)
T 3a1y_A 17 INEENLKAVLQAAGV-EPEEARIKALVAALEGVNIDEVIEKA 57 (58)
T ss_dssp CCHHHHHHHHHHTTC-CCCHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCC-CccHHHHHHHHHHHCCCCHHHHHHcc
Confidence 567899999999999 69999999999988744 77776554
No 164
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=22.89 E-value=2.9e+02 Score=22.17 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCCCC
Q 009433 7 ETIEVIAQSIGVYNLSSDVALALAPDV------EYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGD 80 (535)
Q Consensus 7 e~V~~iAes~Gi~~lsdeaa~~La~dv------eyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~ 80 (535)
-++..+|+.+|++ ..-...+-... +|..+.-++.|...+.++ .++..||-..+ ||.+..
T Consensus 21 ~~~~~lA~~~~~S---~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~---~~si~~IA~~~---------Gf~~~s 85 (107)
T 2k9s_A 21 FDIASVAQHVCLS---PSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTT---RMPIATVGRNV---------GFDDQL 85 (107)
T ss_dssp CCHHHHHHHTTSC---HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHT---------TCCCHH
T ss_pred CCHHHHHHHHCCC---HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHh---------CCCCHH
Confidence 3688899999985 44334343333 566667788898888875 58888887765 887643
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=22.84 E-value=70 Score=33.30 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHhhHHHHhhcc
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREI---MQEAIKCMRHAHRTVLTANDVDSALNLR 68 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrireI---iqeA~KfmrhskR~~Lt~~DI~~AL~~~ 68 (535)
++..++..|+ .++++++..||....-.+|++ ++.+..++...++ .+|.+++..||+..
T Consensus 272 L~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 4455666688 599999999998876555554 4555555554444 69999999999764
No 166
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.61 E-value=67 Score=34.14 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 26 a~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
...||...+ -.|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 445555443 468899999999999999999999999999863
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=22.60 E-value=51 Score=32.15 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCcc-CHhhHHHHhhc
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH-------AHRTVL-TANDVDSALNL 67 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~Kfmrh-------skR~~L-t~~DI~~AL~~ 67 (535)
++..++..|+ .+++++...|+... -.+|++..-..+.... .+.+.+ |.+||..++..
T Consensus 175 l~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 175 IKEKLKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 4455666788 69999999999877 5566544433333333 334568 99999999873
No 168
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.89 E-value=72 Score=30.39 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=35.4
Q ss_pred CCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 009433 21 LSSDV-ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (535)
Q Consensus 21 lsdea-a~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~ 66 (535)
+++++ ...||...+ -.|+.++++|..++....+..+|.+|+..|++
T Consensus 228 ~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 228 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 44444 556666554 35888999999988888888999999999974
No 169
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=21.68 E-value=46 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhC--------------CCccCHhhHHHHhhccCC
Q 009433 39 EIMQEAIKCMRHAH--------------RTVLTANDVDSALNLRNV 70 (535)
Q Consensus 39 eIiqeA~Kfmrhsk--------------R~~Lt~~DI~~AL~~~nv 70 (535)
++|+.|++|+.+-+ .|-||.++|+.||+--+.
T Consensus 16 ~li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 16 PLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGT 61 (70)
T ss_dssp HHHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHccC
Confidence 57788888887764 346999999999998543
No 170
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=21.55 E-value=1.5e+02 Score=33.23 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=51.7
Q ss_pred HHHHHhc-cccCCCCCCc-chHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009433 260 VITCLVS-KRLGNRFSDN-HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 337 (535)
Q Consensus 260 vLTCll~-k~l~~~~~~~-hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~ 337 (535)
=|-|+++ .++|.=..|. ---+||-||++|+.+ ......+ +++..+.+.+ ........+|++.||..+ .+
T Consensus 222 RLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~-----~IL~qLV~~l--~~~~WEVRHGGLLGLKYL-~D 292 (800)
T 3oc3_A 222 KIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPN-----DIIEQLVGFL--DSGDWQVQFSGLIALGYL-KE 292 (800)
T ss_dssp HHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSC-----CHHHHHTTGG--GCSCHHHHHHHHHHHHHT-GG
T ss_pred HHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChhH-----HHHHHHHhhc--CCCCeeehhhhHHHHHHH-HH
Confidence 3445555 4554322222 236999999999999 5444442 3555555432 356799999999999999 22
Q ss_pred hhHhhcccchHHHHHhhhhhhh
Q 009433 338 VVHLLILPNLELYLKFLEPEML 359 (535)
Q Consensus 338 aVr~lllP~L~~y~~~Le~~l~ 359 (535)
++. .+......+-..+.
T Consensus 293 ----LL~-~Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 293 ----FVE-DKDGLCRKLVSLLS 309 (800)
T ss_dssp ----GCC-CHHHHHHHHHHHTT
T ss_pred ----HHH-HHHHHHHHHHhhcC
Confidence 222 25555555554443
No 171
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=21.06 E-value=1.3e+02 Score=28.50 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh------------CCCccCHhhHHHHhhc
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVEY----RVREIMQEAIKCMRHA------------HRTVLTANDVDSALNL 67 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dvey----rireIiqeA~Kfmrhs------------kR~~Lt~~DI~~AL~~ 67 (535)
++.+++..|. .+++++...|+...+- .++.++++|.-.+.+. ....++.+|+..|++.
T Consensus 198 l~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 198 LNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 3455556666 4888888888876552 5677788776655543 2357999999999875
No 172
>3bl2_A V-BCL-2; protein-protein complex, viral BCL-2, apoptosis, autophagy, antiviral defense, coiled coil, cytoplasm, golgi apparatus, membrane; 2.30A {Murid herpesvirus 4} SCOP: f.1.4.1 PDB: 3dvu_A 2abo_A
Probab=20.80 E-value=1.3e+02 Score=26.04 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccc
Q 009433 300 QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 346 (535)
Q Consensus 300 ~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~ 346 (535)
.+-+..|++.+...+.|-- ..|-++|+.+.|..+.+.+++|-
T Consensus 61 ~nW~~~l~~Lf~slf~D~I-----N~GR~vGfFdVGryVCeElL~~~ 102 (131)
T 3bl2_A 61 KNWKRDLSKLFTSLFVDVI-----NSGRIVGFFDVGRYVCEEVLCPG 102 (131)
T ss_dssp GGHHHHHHHHHHHHTSSCC-----CHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHhhHHHHHHHHHHHHh-----cccCeEeeeehHHHHHHHHhCCC
Confidence 4556778888888887643 47999999999999999999983
No 173
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=20.66 E-value=43 Score=28.50 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=47.5
Q ss_pred chhhhhhhh-hhhhcccccchhhHHHHHHHHhhhccCccchhHHHHHHhcc-------ccccccCCcccc
Q 009433 471 SMLRHLQNE-KMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGE-------SMFSFTRKSELY 532 (535)
Q Consensus 471 ~~~~~~~~~-~~~~~~~~~~~~~~s~~l~q~wk~d~~~g~ll~sl~elfge-------~~l~f~p~~e~~ 532 (535)
++++++... ..-+.+-+..-+.-=|.|=+-|+..++.-+.-..|.||||+ +|=||||..-+-
T Consensus 13 ~a~e~lqdYM~~L~~~L~~~ElqqFA~Llr~YR~G~~I~~Fc~kLl~LyG~~Rk~LL~gmRpFIp~~Di~ 82 (98)
T 4fqn_A 13 SATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQ 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGGGGGGGGGGGSCHHHHH
T ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhchHHHHHHhhccCCCChhhHH
Confidence 444555554 45556666777777788889999999999999999999998 488999976543
No 174
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.60 E-value=77 Score=33.91 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 27 LALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 27 ~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
..||+..+ -.|+.++++|..++.+.+|+.+|.+|+..|++.
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44555444 368899999999999999999999999999964
No 175
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.56 E-value=77 Score=33.46 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=33.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (535)
Q Consensus 26 a~~La~dve----yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~ 67 (535)
...||...+ -.|+.++++|..++.+.+|..++.+|+..|++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 344555433 468899999999999999999999999999974
No 176
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=20.31 E-value=6.3e+02 Score=25.63 Aligned_cols=138 Identities=12% Similarity=0.065 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHccCCchHHHHH---HHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHH-HHHHHHHhhcCC
Q 009433 170 KELQLYFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFA-LMRVARSLLRNP 245 (535)
Q Consensus 170 kElQ~Yf~kIt~all~~~~~~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~-Lmrmv~ALl~Np 245 (535)
.|.-..|-.+++.+- .+|...++- ++..+...+ +..+ -.+..|... ..+ .| +.... -+|..-.+.
T Consensus 64 ~e~t~lf~~v~kl~~-s~d~~lKrLvYLyl~~~~~~~--~e~i-Lv~Nsl~kD-l~~--~N-~~iR~lALRtL~~I~--- 132 (355)
T 3tjz_B 64 TEATEAFFAMTKLFQ-SNDPTLRRMCYLTIKEMSCIA--EDVI-IVTSSLTKD-MTG--KE-DSYRGPAVRALCQIT--- 132 (355)
T ss_dssp HHHHHHHHHHHGGGG-CCCHHHHHHHHHHHHHHTTTS--SCGG-GGHHHHHHH-HHS--SC-HHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCH--HHHH-HHHHHHHhh-cCC--Cc-HhHHHHHHHHHhcCC---
Confidence 455566666777554 355556664 344444442 1111 122222222 211 12 22221 244444443
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhh
Q 009433 246 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHY 325 (535)
Q Consensus 246 ~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~Y 325 (535)
....+..+.+.+-.|+..+ |=.+|..|+-...+++.. .|.+-.|.+..+...+.| ++....|
T Consensus 133 ---~~~m~~~l~~~lk~~L~d~---------~pyVRk~A~l~~~kL~~~----~pe~v~~~~~~l~~ll~d--~n~~V~~ 194 (355)
T 3tjz_B 133 ---DSTMLQAIERYMKQAIVDK---------VPSVSSSALVSSLHLLKC----SFDVVKRWVNEAQEAASS--DNIMVQY 194 (355)
T ss_dssp ---CTTTHHHHHHHHHHHHTCS---------SHHHHHHHHHHHHHHTTT----CHHHHHTTHHHHHHHTTC--SSHHHHH
T ss_pred ---CHHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHhcC--CCccHHH
Confidence 3345677888888888544 448999999998888754 567777889999888864 5677779
Q ss_pred hHHHHHHhhCh
Q 009433 326 GAIQGLAALGP 336 (535)
Q Consensus 326 GAI~GL~aLG~ 336 (535)
.|+..|..+..
T Consensus 195 ~Al~lL~ei~~ 205 (355)
T 3tjz_B 195 HALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99998888743
No 177
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=20.28 E-value=7.2e+02 Score=25.59 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHH
Q 009433 233 ALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--QNLQSRVTRT 309 (535)
Q Consensus 233 ~Lmrmv~ALl~Np~L~IepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y--~~L~~RI~~t 309 (535)
.....+..|..+..-+...-+ +.++|.++.++- ..++.+|..|+..|..++......+ .-++.-++..
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~---------~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~ 405 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---------KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP 405 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---------SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHH
Confidence 334444555554433332222 457888877763 2357899999999999987533211 0122334556
Q ss_pred HHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 009433 310 LLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVY 388 (535)
Q Consensus 310 L~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~aLl~a~g~~~~ 388 (535)
|...|..+ ......-++.+|..+=..+- -++.-..|...++..=..++. +....++-..+|..-+..+.+++-
T Consensus 406 L~~LL~~~--d~~i~~~~L~aL~nil~~~~---~~~~~~~~~~~iee~ggl~~i-e~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 406 LMNLLSAK--DTKIIQVILDAISNIFQAAE---KLGETEKLSIMIEECGGLDKI-EALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHTTHHHHH-HHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHHHhH---hccchHHHHHHHHHcCcHHHH-HHHHcCCCHHHHHHHHHHHHHHCC
Confidence 66666543 33344445555544311110 123444444444322111111 222334455577777777777753
No 178
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=20.13 E-value=1e+02 Score=29.46 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccC
Q 009433 9 IEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (535)
Q Consensus 9 V~~iAes~Gi~~lsdeaa~~La~dve---yrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~n 69 (535)
++..++..|+ .++++++..|+.... ..++++++.+..++....+..++.+|+..++....
T Consensus 177 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 177 VMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 4445555677 599999999988642 23455555555555555677899999999987754
Done!