BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009434
         (535 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W84|A Chain A, Structure Of Pex14 In Compex With Pex5
 pdb|2W85|A Chain A, Structure Of Pex14 In Compex With Pex19
          Length = 70

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 32/43 (74%)

Query: 56 REEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAF 98
          RE  +  AVKFL + +VR SP+  RR+FL+KKGLT EEID AF
Sbjct: 14 REPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAF 56


>pdb|3FF5|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of
          The Peroxisomal Matrix-Protein-Import Receptor, Pex14p
 pdb|3FF5|B Chain B, Crystal Structure Of The Conserved N-Terminal Domain Of
          The Peroxisomal Matrix-Protein-Import Receptor, Pex14p
          Length = 54

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 50 VNSEPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAF 98
          + S   RE  +  AVKFL + +VR SP+  RR+FL+KKGLT EEID AF
Sbjct: 3  LGSPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAF 51


>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
           Gp91(Phox)
          Length = 186

 Score = 33.5 bits (75), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 250 YFSELMNLLDVQLQEMKS---MSNSIRKLEGPSNNSGRTSLVNQEDHRDSVTGVKQPYAN 306
           +F++L+ LL+ Q+QE  +   +S +I  L G   +      V+ ++ +D +TG+KQ    
Sbjct: 69  WFADLLQLLESQMQERNNAGFLSYNIY-LTGWDESQANHFAVHHDEEKDVITGLKQKTLY 127

Query: 307 GKADFD--MQSVRSSSP 321
           G+ ++D   +++ S  P
Sbjct: 128 GRPNWDNEFKTIASQHP 144


>pdb|1E5N|A Chain A, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
           In Complex With Xylopentaose
 pdb|1E5N|B Chain B, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
           In Complex With Xylopentaose
          Length = 348

 Score = 32.0 bits (71), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 70  PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 109
           P  RGS   YR+S   ++    E IDEAFRR     P+A+
Sbjct: 137 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 176


>pdb|1W32|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
           Xylanase (Xyn10a) From Cellvibrio Japonicus
 pdb|1W32|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
           Xylanase (Xyn10a) From Cellvibrio Japonicus
          Length = 348

 Score = 32.0 bits (71), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 70  PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 109
           P  RGS   YR+S   ++    E IDEAFRR     P+A+
Sbjct: 137 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 176


>pdb|1W2V|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
           Xylanase (Xyn10a) From Cellvibrio Japonicus
 pdb|1W2V|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
           Xylanase (Xyn10a) From Cellvibrio Japonicus
          Length = 348

 Score = 32.0 bits (71), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 70  PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 109
           P  RGS   YR+S   ++    E IDEAFRR     P+A+
Sbjct: 137 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 176


>pdb|1W2P|A Chain A, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
           Cellvibrio Japonicus
 pdb|1W2P|B Chain B, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
           Cellvibrio Japonicus
          Length = 348

 Score = 32.0 bits (71), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 70  PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 109
           P  RGS   YR+S   ++    E IDEAFRR     P+A+
Sbjct: 137 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 176


>pdb|1CLX|A Chain A, Catalytic Core Of Xylanase A
 pdb|1CLX|B Chain B, Catalytic Core Of Xylanase A
 pdb|1CLX|C Chain C, Catalytic Core Of Xylanase A
 pdb|1CLX|D Chain D, Catalytic Core Of Xylanase A
          Length = 347

 Score = 32.0 bits (71), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 70  PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 109
           P  RGS   YR+S   ++    E IDEAFRR     P+A+
Sbjct: 136 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 175


>pdb|1XYS|A Chain A, Catalytic Core Of Xylanase A E246c Mutant
 pdb|1XYS|B Chain B, Catalytic Core Of Xylanase A E246c Mutant
          Length = 347

 Score = 32.0 bits (71), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 70  PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 109
           P  RGS   YR+S   ++    E IDEAFRR     P+A+
Sbjct: 136 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 175


>pdb|1W3H|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
           Xylanase (Xyn10a) From Cellvibrio Japonicus
 pdb|1W3H|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
           Xylanase (Xyn10a) From Cellvibrio Japonicus
          Length = 359

 Score = 32.0 bits (71), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 70  PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 109
           P  RGS   YR+S   ++    E IDEAFRR     P+A+
Sbjct: 148 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 187


>pdb|2WXX|A Chain A, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form
 pdb|2WXX|B Chain B, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form
 pdb|2WXX|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form
 pdb|2WXX|D Chain D, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form
 pdb|2WXY|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Reduced
           Form
 pdb|2WY0|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
           Form With Space Group P6122
          Length = 453

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 20  AAETSQQATGVQQDGPPEAAEQPISSPSVFVNSE 53
           A E  Q  T VQQ G PEA +  +SSP +F   E
Sbjct: 401 AGEEEQPTTSVQQPGSPEALDVTLSSPFLFAIYE 434


>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
           With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
 pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
           With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
          Length = 374

 Score = 28.9 bits (63), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 283 GRTSLVNQEDHRDSVTGVKQPYANGKADFDMQSV 316
           G T  VN  DH + ++ V     NG  DF ++ V
Sbjct: 237 GATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV 270


>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
 pdb|1G19|A Chain A, Structure Of Reca Protein
 pdb|1MO3|A Chain A, Reca-Adp Complex
 pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
 pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
 pdb|1MO6|A Chain A, Reca-datp-mg Complex
          Length = 350

 Score = 28.9 bits (63), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 260 VQLQEMKSMSNSIRKLEGPSNNSGRTSL-VNQ-EDHRDSVTGVKQPYANGKADFDMQSVR 317
           V LQ  + MS ++RK+ G  NNSG T++ +NQ  D    + G  +    GKA     SVR
Sbjct: 165 VGLQA-RLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVR 223


>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
           Of Escherichia Coli At 2 Angstroems Resolution
 pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
           Of Escherichia Coli At 2 Angstroems Resolution
 pdb|1SPU|A Chain A, Structure Of Oxidoreductase
 pdb|1SPU|B Chain B, Structure Of Oxidoreductase
 pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
           Reduced With Beta-Phenylethylamine
 pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
           Reduced With Beta-Phenylethylamine
 pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
           Oxidase Anaerobically Reduced With Beta-Phenylethylamine
           And Complexed With Nitric Oxide.
 pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
           Oxidase Anaerobically Reduced With Beta-Phenylethylamine
           And Complexed With Nitric Oxide.
 pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
           Rate-determining Catalytic Intermediate Of E. Coli
           Copper-containing Amine Oxidase.
 pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
           Rate-determining Catalytic Intermediate Of E. Coli
           Copper-containing Amine Oxidase.
 pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase: X-Ray Crystallographic
           Studies With Mutational Variants.
 pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase: X-Ray Crystallographic
           Studies With Mutational Variants.
 pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
           Tranylcypromine
 pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
           Tranylcypromine
 pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
 pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
 pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
 pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
 pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
 pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
 pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
 pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
          Length = 727

 Score = 28.5 bits (62), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 18/89 (20%)

Query: 12  TAGNPPTLAAETSQQATGVQQDGPPEAAEQPISSPSVFVNSEPMREEQVQNAVKFL---- 67
           TAG P T   + +Q   G +QD     A Q     ++ + S P +E ++ N V +     
Sbjct: 554 TAGGPRTSTMQVNQYNIGNEQD-----AAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPY 608

Query: 68  ---SHPKVRGSP------VIYRRSFLEKK 87
              +HP  +G+       + +R SF++K+
Sbjct: 609 AGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637


>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
           The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
           Formation
 pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
           The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
           Formation
          Length = 727

 Score = 28.5 bits (62), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 18/89 (20%)

Query: 12  TAGNPPTLAAETSQQATGVQQDGPPEAAEQPISSPSVFVNSEPMREEQVQNAVKFL---- 67
           TAG P T   + +Q   G +QD     A Q     ++ + S P +E ++ N V +     
Sbjct: 554 TAGGPRTSTMQVNQYNIGNEQD-----AAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPY 608

Query: 68  ---SHPKVRGSP------VIYRRSFLEKK 87
              +HP  +G+       + +R SF++K+
Sbjct: 609 AGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637


>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
           Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
 pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
           Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
          Length = 727

 Score = 28.5 bits (62), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 18/89 (20%)

Query: 12  TAGNPPTLAAETSQQATGVQQDGPPEAAEQPISSPSVFVNSEPMREEQVQNAVKFL---- 67
           TAG P T   + +Q   G +QD     A Q     ++ + S P +E ++ N V +     
Sbjct: 554 TAGGPRTSTMQVNQYNIGNEQD-----AAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPY 608

Query: 68  ---SHPKVRGSP------VIYRRSFLEKK 87
              +HP  +G+       + +R SF++K+
Sbjct: 609 AGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 637


>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-ray Crystallographic
           Studies With Mutational Variants
 pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-ray Crystallographic
           Studies With Mutational Variants
          Length = 722

 Score = 28.5 bits (62), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 18/89 (20%)

Query: 12  TAGNPPTLAAETSQQATGVQQDGPPEAAEQPISSPSVFVNSEPMREEQVQNAVKFL---- 67
           TAG P T   + +Q   G +QD     A Q     ++ + S P +E ++ N V +     
Sbjct: 549 TAGGPRTSTMQVNQYNIGNEQD-----AAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPY 603

Query: 68  ---SHPKVRGSP------VIYRRSFLEKK 87
              +HP  +G+       + +R SF++K+
Sbjct: 604 AGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632


>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-Ray Crystallographic
           Studies With Mutational Variants
 pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-Ray Crystallographic
           Studies With Mutational Variants
          Length = 721

 Score = 28.5 bits (62), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 18/89 (20%)

Query: 12  TAGNPPTLAAETSQQATGVQQDGPPEAAEQPISSPSVFVNSEPMREEQVQNAVKFL---- 67
           TAG P T   + +Q   G +QD     A Q     ++ + S P +E ++ N V +     
Sbjct: 549 TAGGPRTSTMQVNQYNIGNEQD-----AAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPY 603

Query: 68  ---SHPKVRGSP------VIYRRSFLEKK 87
              +HP  +G+       + +R SF++K+
Sbjct: 604 AGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632


>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-Ray Crystallographic
           Studies With Mutational Variants
 pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-Ray Crystallographic
           Studies With Mutational Variants
          Length = 721

 Score = 28.5 bits (62), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 18/89 (20%)

Query: 12  TAGNPPTLAAETSQQATGVQQDGPPEAAEQPISSPSVFVNSEPMREEQVQNAVKFL---- 67
           TAG P T   + +Q   G +QD     A Q     ++ + S P +E ++ N V +     
Sbjct: 549 TAGGPRTSTMQVNQYNIGNEQD-----AAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPY 603

Query: 68  ---SHPKVRGSP------VIYRRSFLEKK 87
              +HP  +G+       + +R SF++K+
Sbjct: 604 AGGTHPVAKGAQFAPDEWIYHRLSFMDKQ 632


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.123    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,101,915
Number of Sequences: 62578
Number of extensions: 401782
Number of successful extensions: 1274
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 23
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.4 bits)