Query 009434
Match_columns 535
No_of_seqs 171 out of 255
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 13:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2629 Peroxisomal membrane a 100.0 3.9E-42 8.4E-47 342.2 20.2 245 56-377 1-245 (300)
2 PF04695 Pex14_N: Peroxisomal 100.0 7.5E-33 1.6E-37 249.3 5.5 133 55-190 1-136 (136)
3 KOG2629 Peroxisomal membrane a 95.4 0.29 6.3E-06 51.0 13.2 158 156-323 81-247 (300)
4 PF07889 DUF1664: Protein of u 94.4 0.072 1.6E-06 49.2 5.3 116 161-280 5-120 (126)
5 PRK13454 F0F1 ATP synthase sub 92.8 0.98 2.1E-05 43.2 10.0 37 156-192 22-58 (181)
6 PRK06569 F0F1 ATP synthase sub 91.3 2.1 4.6E-05 40.9 10.3 25 165-192 13-37 (155)
7 PRK09174 F0F1 ATP synthase sub 91.0 2.1 4.6E-05 42.0 10.4 35 163-206 55-89 (204)
8 PRK13453 F0F1 ATP synthase sub 88.5 4.2 9.1E-05 38.5 9.9 31 158-192 15-45 (173)
9 PRK14471 F0F1 ATP synthase sub 87.2 6.1 0.00013 36.7 10.0 35 161-204 8-42 (164)
10 PRK13460 F0F1 ATP synthase sub 85.9 7.2 0.00016 36.8 9.9 39 159-206 14-52 (173)
11 PF04799 Fzo_mitofusin: fzo-li 85.0 1.1 2.5E-05 43.5 4.1 98 170-282 50-163 (171)
12 PRK13461 F0F1 ATP synthase sub 84.2 11 0.00024 34.8 10.2 30 159-192 3-32 (159)
13 PRK10920 putative uroporphyrin 84.2 15 0.00032 39.9 12.4 27 157-183 33-59 (390)
14 PRK14472 F0F1 ATP synthase sub 82.9 12 0.00026 35.3 9.9 37 159-204 16-52 (175)
15 PRK06975 bifunctional uroporph 82.5 54 0.0012 37.5 16.5 24 160-183 323-346 (656)
16 PRK14473 F0F1 ATP synthase sub 80.6 17 0.00037 33.8 9.9 37 159-204 6-42 (164)
17 PF06103 DUF948: Bacterial pro 80.2 35 0.00076 28.8 12.2 60 217-276 29-88 (90)
18 COG0711 AtpF F0F1-type ATP syn 79.6 16 0.00035 34.5 9.5 25 165-192 9-33 (161)
19 TIGR03321 alt_F1F0_F0_B altern 79.4 15 0.00032 36.7 9.7 30 159-192 3-32 (246)
20 PRK14474 F0F1 ATP synthase sub 78.7 17 0.00036 36.8 9.9 30 159-192 3-32 (250)
21 CHL00118 atpG ATP synthase CF0 78.0 21 0.00046 33.2 9.7 33 163-204 24-56 (156)
22 PRK07352 F0F1 ATP synthase sub 77.2 41 0.0009 31.7 11.5 28 159-186 17-44 (174)
23 PRK08476 F0F1 ATP synthase sub 76.9 26 0.00056 32.4 9.8 37 159-204 5-41 (141)
24 PHA02681 ORF089 virion membran 76.8 5 0.00011 35.6 4.8 57 162-223 4-60 (92)
25 PRK07353 F0F1 ATP synthase sub 74.9 33 0.00072 30.8 9.8 36 159-204 4-39 (140)
26 PRK14475 F0F1 ATP synthase sub 74.5 26 0.00057 33.0 9.4 36 163-204 9-44 (167)
27 KOG3300 NADH:ubiquinone oxidor 74.5 16 0.00035 34.9 7.8 28 156-183 28-55 (146)
28 PRK10476 multidrug resistance 74.1 17 0.00038 37.2 8.8 33 157-189 6-38 (346)
29 PRK05759 F0F1 ATP synthase sub 73.4 34 0.00073 31.3 9.6 22 178-204 17-38 (156)
30 PRK13729 conjugal transfer pil 72.2 36 0.00079 38.1 11.1 55 215-276 62-117 (475)
31 PRK06568 F0F1 ATP synthase sub 72.0 36 0.00078 32.6 9.7 34 163-204 5-38 (154)
32 PF09527 ATPase_gene1: Putativ 70.2 5.3 0.00011 31.2 3.2 28 158-185 27-54 (55)
33 PF00430 ATP-synt_B: ATP synth 70.0 42 0.00091 29.3 9.1 23 179-206 13-35 (132)
34 PRK11637 AmiB activator; Provi 68.6 19 0.00042 38.3 8.0 24 251-274 112-135 (428)
35 PF07139 DUF1387: Protein of u 67.5 19 0.0004 38.2 7.3 76 211-286 172-259 (302)
36 PF04375 HemX: HemX; InterPro 65.8 87 0.0019 33.3 12.0 13 169-181 38-50 (372)
37 PRK10600 nitrate/nitrite senso 64.5 51 0.0011 35.8 10.2 28 216-243 177-204 (569)
38 PRK13428 F0F1 ATP synthase sub 63.9 44 0.00095 36.5 9.6 32 165-204 4-35 (445)
39 PF06212 GRIM-19: GRIM-19 prot 63.7 13 0.00029 34.7 4.9 29 156-184 24-52 (130)
40 PRK06231 F0F1 ATP synthase sub 63.4 84 0.0018 31.0 10.6 12 179-190 62-73 (205)
41 COG3883 Uncharacterized protei 63.3 34 0.00074 35.6 8.2 55 215-276 39-93 (265)
42 PF15654 Tox-WTIP: Toxin with 62.1 3.5 7.6E-05 33.6 0.8 32 160-193 11-42 (54)
43 PF10805 DUF2730: Protein of u 60.6 1.1E+02 0.0024 27.3 9.9 21 166-186 12-32 (106)
44 TIGR01144 ATP_synt_b ATP synth 59.8 60 0.0013 29.4 8.4 22 178-204 8-29 (147)
45 PF08181 DegQ: DegQ (SacQ) fam 58.8 11 0.00025 29.5 3.0 36 247-282 2-37 (46)
46 PF04156 IncA: IncA protein; 57.5 1.4E+02 0.0031 28.1 10.7 60 175-236 54-114 (191)
47 PRK15048 methyl-accepting chem 56.6 1.3E+02 0.0029 32.6 11.8 11 179-189 210-220 (553)
48 PRK11107 hybrid sensory histid 55.3 1.1E+02 0.0024 34.6 11.2 15 175-189 192-206 (919)
49 PF06160 EzrA: Septation ring 54.7 35 0.00077 38.2 7.2 27 165-191 2-28 (560)
50 PRK09173 F0F1 ATP synthase sub 54.0 1.6E+02 0.0035 27.2 10.4 7 198-204 30-36 (159)
51 PF08700 Vps51: Vps51/Vps67; 53.5 62 0.0014 26.6 6.8 62 216-280 21-82 (87)
52 PF02936 COX4: Cytochrome c ox 53.1 18 0.0004 34.0 4.0 33 158-190 71-103 (142)
53 cd07321 Extradiol_Dioxygenase_ 53.0 8.9 0.00019 32.5 1.8 36 65-100 11-46 (77)
54 PF06120 Phage_HK97_TLTM: Tail 52.2 41 0.00088 35.6 6.7 36 231-273 70-105 (301)
55 PF07851 TMPIT: TMPIT-like pro 50.6 78 0.0017 34.0 8.6 49 230-278 13-61 (330)
56 PF12072 DUF3552: Domain of un 50.2 1.5E+02 0.0032 29.0 9.8 21 165-185 3-23 (201)
57 PRK13455 F0F1 ATP synthase sub 49.1 1.9E+02 0.004 27.6 10.1 9 158-166 24-32 (184)
58 PF06120 Phage_HK97_TLTM: Tail 46.9 1.2E+02 0.0027 32.1 9.2 12 171-182 32-43 (301)
59 PRK09793 methyl-accepting prot 46.0 2E+02 0.0044 31.5 11.1 28 252-279 285-312 (533)
60 PF00015 MCPsignal: Methyl-acc 45.4 1.6E+02 0.0034 27.2 8.8 29 215-243 80-108 (213)
61 PRK08475 F0F1 ATP synthase sub 45.1 1.6E+02 0.0034 28.0 9.0 21 179-204 36-56 (167)
62 PF15005 IZUMO: Izumo sperm-eg 45.0 1.3E+02 0.0028 29.3 8.4 99 174-272 13-113 (160)
63 TIGR00998 8a0101 efflux pump m 45.0 2.2E+02 0.0047 28.7 10.4 28 159-186 2-29 (334)
64 PF06295 DUF1043: Protein of u 42.4 2.1E+02 0.0047 26.2 9.1 33 236-268 37-69 (128)
65 PRK04778 septation ring format 41.1 1.1E+02 0.0024 34.3 8.3 27 250-276 106-132 (569)
66 KOG0718 Molecular chaperone (D 41.0 46 0.00099 37.6 5.3 28 160-187 367-396 (546)
67 PRK14740 kdbF potassium-transp 41.0 41 0.00088 24.6 3.3 24 160-183 2-25 (29)
68 PRK15136 multidrug efflux syst 39.3 2E+02 0.0043 30.6 9.6 24 157-180 19-42 (390)
69 PRK15347 two component system 38.8 2.7E+02 0.0059 31.7 11.0 11 176-186 311-321 (921)
70 PRK15041 methyl-accepting chem 38.5 3.5E+02 0.0076 29.9 11.6 13 174-186 206-218 (554)
71 PF15061 DUF4538: Domain of un 37.3 30 0.00064 28.8 2.4 32 159-193 3-34 (58)
72 PRK06569 F0F1 ATP synthase sub 36.4 3.3E+02 0.0071 26.4 9.6 15 189-204 30-44 (155)
73 MTH00169 ATP8 ATP synthase F0 35.9 46 0.00099 28.0 3.4 43 159-201 4-48 (67)
74 PF02465 FliD_N: Flagellar hoo 35.1 62 0.0014 27.6 4.2 22 255-276 35-56 (99)
75 cd00922 Cyt_c_Oxidase_IV Cytoc 34.6 52 0.0011 30.9 3.9 30 159-188 72-101 (136)
76 COG3850 NarQ Signal transducti 34.5 2.6E+02 0.0057 32.2 9.9 99 163-276 153-256 (574)
77 PRK06770 hypothetical protein; 33.7 1.9E+02 0.0042 28.9 7.7 19 228-246 67-85 (180)
78 PF11932 DUF3450: Protein of u 33.7 2.9E+02 0.0064 27.5 9.2 11 335-345 150-160 (251)
79 PF12072 DUF3552: Domain of un 33.5 3.7E+02 0.0079 26.3 9.7 23 164-186 6-28 (201)
80 COG3167 PilO Tfp pilus assembl 32.6 1.3E+02 0.0028 30.6 6.4 25 251-276 89-113 (211)
81 PF05791 Bacillus_HBL: Bacillu 32.5 4.7E+02 0.01 25.3 10.3 30 252-281 152-181 (184)
82 KOG4075 Cytochrome c oxidase, 32.3 40 0.00087 33.1 2.8 35 158-192 96-130 (167)
83 COG1566 EmrA Multidrug resista 32.3 2.9E+02 0.0062 29.9 9.4 33 156-188 10-42 (352)
84 PF06936 Selenoprotein_S: Sele 31.8 58 0.0013 32.3 3.9 31 218-248 84-114 (190)
85 cd07922 CarBa CarBa is the A s 31.8 17 0.00037 31.6 0.2 31 70-100 17-47 (81)
86 PLN03196 MOC1-like protein; Pr 31.5 55 0.0012 36.2 4.1 33 70-102 113-149 (487)
87 PRK10935 nitrate/nitrite senso 31.5 3.6E+02 0.0078 28.7 10.0 28 216-243 205-232 (565)
88 PF11598 COMP: Cartilage oligo 30.9 45 0.00097 26.4 2.4 22 251-272 17-38 (45)
89 smart00803 TAF TATA box bindin 30.7 33 0.00072 28.3 1.7 28 58-99 38-65 (65)
90 PRK10559 p-hydroxybenzoic acid 30.5 3.9E+02 0.0084 27.5 9.7 35 168-202 12-46 (310)
91 PRK12705 hypothetical protein; 30.2 3.1E+02 0.0068 31.1 9.6 11 179-189 23-33 (508)
92 PF12729 4HB_MCP_1: Four helix 29.7 3.7E+02 0.008 23.2 10.3 49 217-265 75-125 (181)
93 PRK11677 hypothetical protein; 29.1 2.8E+02 0.006 26.3 7.7 19 250-268 55-73 (134)
94 PRK10361 DNA recombination pro 28.6 4.3E+02 0.0093 29.9 10.2 20 251-270 101-120 (475)
95 PF05405 Mt_ATP-synt_B: Mitoch 28.3 1.3E+02 0.0028 28.0 5.4 28 165-196 17-44 (163)
96 PRK13922 rod shape-determining 27.5 6.4E+02 0.014 25.3 11.0 25 169-196 17-41 (276)
97 PF14241 DUF4341: Domain of un 27.1 59 0.0013 26.6 2.6 21 156-176 41-61 (62)
98 PF11598 COMP: Cartilage oligo 27.0 2.7E+02 0.0058 22.1 6.1 30 250-279 9-38 (45)
99 PF09731 Mitofilin: Mitochondr 26.6 64 0.0014 35.7 3.6 23 159-181 2-24 (582)
100 PF10241 KxDL: Uncharacterized 26.3 4.3E+02 0.0093 22.9 9.0 50 223-272 17-66 (88)
101 PF10158 LOH1CR12: Tumour supp 26.0 5.6E+02 0.012 24.1 9.1 37 224-260 52-88 (131)
102 cd07595 BAR_RhoGAP_Rich-like T 25.9 3.1E+02 0.0067 28.0 8.0 44 214-257 162-205 (244)
103 PF15079 DUF4546: Domain of un 25.8 2.7E+02 0.0059 27.9 7.3 51 213-265 50-101 (205)
104 PF11887 DUF3407: Protein of u 25.5 1.1E+02 0.0024 31.2 4.8 65 219-287 54-118 (267)
105 PF02536 mTERF: mTERF; InterP 25.3 63 0.0014 32.7 3.0 29 75-103 173-201 (345)
106 PF09945 DUF2177: Predicted me 25.1 1E+02 0.0022 29.0 4.0 32 156-187 68-99 (128)
107 PF08405 Calici_PP_N: Viral po 25.0 5.3E+02 0.012 28.2 9.7 51 220-270 283-333 (358)
108 PF02536 mTERF: mTERF; InterP 25.0 66 0.0014 32.5 3.1 27 76-102 242-268 (345)
109 PHA00426 type II holin 24.5 1.1E+02 0.0024 26.1 3.7 28 159-186 32-59 (67)
110 smart00283 MA Methyl-accepting 24.2 5.8E+02 0.013 23.9 9.0 18 251-268 76-93 (262)
111 PF11932 DUF3450: Protein of u 23.7 2.9E+02 0.0063 27.6 7.2 40 237-276 58-97 (251)
112 smart00733 Mterf Mitochondrial 23.6 62 0.0013 20.6 1.8 23 68-90 6-31 (31)
113 PRK13729 conjugal transfer pil 23.4 1.8E+02 0.0039 32.8 6.2 54 216-276 71-124 (475)
114 cd00632 Prefoldin_beta Prefold 23.2 2.7E+02 0.0058 24.4 6.1 25 252-276 80-104 (105)
115 PF10660 MitoNEET_N: Iron-cont 23.1 28 0.0006 29.3 0.0 24 156-179 31-54 (64)
116 KOG3433 Protein involved in me 23.0 4.9E+02 0.011 26.5 8.5 44 233-276 100-143 (203)
117 PF13801 Metal_resist: Heavy-m 23.0 3.3E+02 0.0072 22.5 6.5 37 232-268 70-106 (125)
118 PF01708 Gemini_mov: Geminivir 23.0 1.2E+02 0.0026 27.3 3.9 41 156-196 29-72 (91)
119 PRK11466 hybrid sensory histid 22.9 1E+03 0.022 27.4 12.1 16 257-272 447-462 (914)
120 TIGR00778 ahpD_dom alkylhydrop 22.9 90 0.002 23.2 2.7 40 57-99 8-47 (50)
121 PF07889 DUF1664: Protein of u 22.9 2.4E+02 0.0053 26.4 6.1 84 184-283 19-102 (126)
122 PLN03196 MOC1-like protein; Pr 22.8 1.1E+02 0.0023 34.0 4.4 34 69-102 329-365 (487)
123 PRK15041 methyl-accepting chem 22.6 4.8E+02 0.01 28.9 9.3 32 215-246 399-430 (554)
124 PF07960 CBP4: CBP4; InterPro 22.3 4.9E+02 0.011 24.8 7.9 36 160-196 4-46 (128)
125 PF10112 Halogen_Hydrol: 5-bro 22.2 7.1E+02 0.015 23.9 9.6 13 165-177 33-45 (199)
126 smart00787 Spc7 Spc7 kinetocho 22.0 2.4E+02 0.0051 29.9 6.5 66 217-283 204-269 (312)
127 PF10392 COG5: Golgi transport 21.9 2.8E+02 0.0061 25.3 6.2 56 219-276 31-92 (132)
128 PF11282 DUF3082: Protein of u 21.7 1.2E+02 0.0025 26.8 3.5 25 163-187 6-30 (82)
129 cd07921 PCA_45_Doxase_A_like S 21.7 36 0.00078 31.2 0.5 24 77-100 33-56 (106)
130 PF14316 DUF4381: Domain of un 21.7 1.2E+02 0.0026 28.0 3.8 28 160-187 20-47 (146)
131 PRK15048 methyl-accepting chem 21.3 5.5E+02 0.012 28.0 9.3 28 215-242 397-424 (553)
132 PF15141 DUF4574: Domain of un 21.3 42 0.00091 29.7 0.8 15 169-183 14-28 (84)
133 PHA02902 putative IMV membrane 21.2 1.2E+02 0.0026 26.1 3.3 25 165-189 7-32 (70)
134 PRK11637 AmiB activator; Provi 21.2 3.5E+02 0.0077 29.0 7.7 48 232-279 202-249 (428)
135 PF07412 Geminin: Geminin; In 20.9 4.7E+02 0.01 26.6 7.9 69 215-284 108-178 (200)
136 PF08317 Spc7: Spc7 kinetochor 20.8 4.7E+02 0.01 27.3 8.4 43 55-98 16-63 (325)
137 PF10498 IFT57: Intra-flagella 20.8 4.7E+02 0.01 28.3 8.5 29 158-187 215-244 (359)
138 PF10785 NADH-u_ox-rdase: NADH 20.7 1.1E+02 0.0024 26.6 3.3 27 157-183 18-44 (86)
139 COG5264 VTC1 Vacuolar transpor 20.7 1.1E+02 0.0024 28.9 3.4 28 157-184 31-58 (126)
140 PF10168 Nup88: Nuclear pore c 20.6 2.9E+02 0.0063 32.5 7.4 17 82-98 402-418 (717)
141 COG1344 FlgL Flagellin and rel 20.6 4.5E+02 0.0098 27.7 8.2 56 217-279 67-128 (360)
142 KOG4580 Component of vacuolar 20.5 1.2E+02 0.0026 28.2 3.5 28 157-184 16-43 (112)
143 KOG2150 CCR4-NOT transcription 20.4 1.4E+02 0.0029 34.5 4.6 62 214-284 5-66 (575)
144 PF06160 EzrA: Septation ring 20.2 3.2E+02 0.0069 30.8 7.4 96 181-277 239-334 (560)
No 1
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-42 Score=342.18 Aligned_cols=245 Identities=28% Similarity=0.382 Sum_probs=180.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCcccccccccccccCCCCCcCCCCCCCC
Q 009434 56 REEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQATSANQAVGQVKSSSSNIQSQAPTQA 135 (535)
Q Consensus 56 Redlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ra~~~~p~s~a~s~sqa~g~v~sstsn~q~~~p~q~ 135 (535)
||+||++||+||+||+||++||.+||+||++||||++||++||+|.|....-. + + +.+++.++ .+.++
T Consensus 1 Redli~~AVkFL~~~kVr~aPli~kr~FLksKGLT~eEI~eAfk~~gi~~~d~---s-~-----~~p~~~~~---~~~~p 68 (300)
T KOG2629|consen 1 REDLIENAVKFLQNPKVRDAPLIKKREFLKSKGLTEEEIQEAFKRDGIPAQDV---S-K-----QIPTANQV---VSGGP 68 (300)
T ss_pred CcHHHHHHHHHhcCcccccchHHHHHHHHHhcCCCHHHHHHHHHhcCCccccc---c-c-----cCCCcccc---cCCCc
Confidence 89999999999999999999999999999999999999999999965432110 0 0 00000111 00111
Q ss_pred CCCCCCCCCCCCCCCCccccCccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCH
Q 009434 136 LQPQPAGAAPTAVSPVSTTMMSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSL 215 (535)
Q Consensus 136 yqp~~~~P~p~g~~p~~~~~~prrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i 215 (535)
+.+- .+|.+ ...+||||||+||++++|+.||+|.|+|+||+|+|+++.+. +||.||. .|
T Consensus 69 ~~~~--------~~P~~---~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P~~l~~~~~-k~e~~k~---------~L 127 (300)
T KOG2629|consen 69 PLLI--------IQPQQ---NVLRRWRDYFVMAVILAGIAYAAYRFVKSYVLPRFLGESKD-KLEADKR---------QL 127 (300)
T ss_pred hhhh--------cCCCc---cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCccch-hHHHHHH---------HH
Confidence 1110 11111 46799999999999999999999999999999999999988 8887764 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCcccccccccc
Q 009434 216 AEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSLVNQEDHRD 295 (535)
Q Consensus 216 ~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f~~~~~~~QEd~~~ 295 (535)
+++..++.|...+...+++++.++|..++.| +...|..+ ..-+-.++..|++|+ +
T Consensus 128 d~~~~~~~~~~~~l~~~va~v~q~~~~qq~E---ls~~L~~l----~~~~~~~s~~~~k~e------------------s 182 (300)
T KOG2629|consen 128 DDQFDKAAKSLNALMDEVAQVSQLLATQQSE---LSRALASL----KNTLVQLSRNIEKLE------------------S 182 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHhhhhHHHHH------------------H
Confidence 6666666688888888898988888877553 33333333 333336666666666 4
Q ss_pred cccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCchHHHHHHHHhhCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 009434 296 SVTGVKQPYANGKADFDMQSVRSSSPPAPGEPSVAPHPKSYMEIMAMVQRGEKPPNIRDINDLPPNPNQQLPNPRLAPKA 375 (535)
Q Consensus 296 ~~~slKql~~ng~~~~d~~s~r~s~~p~~~e~~~~~hp~sy~eim~m~qrg~~p~~i~di~d~ppnp~~~~~~~r~~~~~ 375 (535)
+++.+|++..|++.--+ |...+ +.|+||..||.+|.| ++.+||++|+++++.+..+..|..
T Consensus 183 ei~~Ik~lvln~~~f~~---------p~~p~-~~p~ip~wqi~~~sp---------~~~~~~~~~~~ne~~s~~~~~p~s 243 (300)
T KOG2629|consen 183 EINTIKQLVLNMSNFAP---------PVAPS-SAPSIPSWQIQAESP---------HHSSNRMTSTDNEKASDFATPPNS 243 (300)
T ss_pred HHHHHHHHHhcccccCC---------CCCcc-cCCCCchhhhccccc---------hhhhccCCCCCCcccccCCCCCCC
Confidence 45667777777654333 33322 889999999998654 788999999999999999999999
Q ss_pred Cc
Q 009434 376 KP 377 (535)
Q Consensus 376 kp 377 (535)
+|
T Consensus 244 sp 245 (300)
T KOG2629|consen 244 SP 245 (300)
T ss_pred CC
Confidence 98
No 2
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=99.97 E-value=7.5e-33 Score=249.31 Aligned_cols=133 Identities=34% Similarity=0.518 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCcc--cccccccccccCCC-CCcCCCC
Q 009434 55 MREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQA--TSANQAVGQVKSSS-SNIQSQA 131 (535)
Q Consensus 55 ~Redlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ra~~~~p~s~a--~s~sqa~g~v~sst-sn~q~~~ 131 (535)
+||+||++||+||+||+|+++|+++||+||++||||++||++||+|++.......+ ..... .+...+.. ....+..
T Consensus 1 ~Re~li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (136)
T PF04695_consen 1 MREDLIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPPATSSTPAASPAS-SSQPSSTPSSQPAPPP 79 (136)
T ss_dssp -HHHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S-----------------------------
T ss_pred CHHHHHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcccccccccccccc-CCCCCCCCCCCCCCCC
Confidence 59999999999999999999999999999999999999999999999877631111 00000 00000000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccc
Q 009434 132 PTQALQPQPAGAAPTAVSPVSTTMMSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRL 190 (535)
Q Consensus 132 p~q~yqp~~~~P~p~g~~p~~~~~~prrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~L 190 (535)
++....+.. .+.+..+..++. ..++++|||||+|++++||++||+|.|+|+||+|+|
T Consensus 80 ~~~~~~~~~-~~~~~~~~~~pp-~~p~~~wr~~~~~a~~~~Gl~~~~y~~~k~~v~P~l 136 (136)
T PF04695_consen 80 PPPPSPPPP-QPPPPPYPRPPP-LPPQRTWRDVFITAYAFGGLGYGLYGLSKKYVEPML 136 (136)
T ss_dssp -----------------------------------------------------------
T ss_pred CCCCCCCCC-CCCCccccchhh-hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC
Confidence 000000000 000000111111 136889999999999999999999999999999987
No 3
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.29 Score=50.97 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=103.8
Q ss_pred CccchhHHH-HHHHHHHHHHhHHHH-HHHHHhhcccccc--cchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHH
Q 009434 156 MSRFHWYHA-VLAVGLLAASGAGTA-VFFKKSLIPRLKS--WIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAAS 231 (535)
Q Consensus 156 ~prrDWRD~-FIMAtV~gGvgYGlY-~L~KrYIlP~Lkp--ptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~s 231 (535)
..-|||... .||||+.-|+ |-+| ..+-.||++-=++ .--+-.|+..-..+ .+-++. |.+|+++..+..+.+-+
T Consensus 81 ~rwrdy~vmAvi~aGi~y~~-y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~-~~~~~~-l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 81 RRWRDYFVMAVILAGIAYAA-YRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKA-AKSLNA-LMDEVAQVSQLLATQQS 157 (300)
T ss_pred hhHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 467999876 7788877776 5554 3445677776666 22221333211111 122333 89999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCccccc--cccccccc---cccccccc
Q 009434 232 DVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSLVNQ--EDHRDSVT---GVKQPYAN 306 (535)
Q Consensus 232 evakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f~~~~~~~Q--Ed~~~~~~---slKql~~n 306 (535)
|++.++-.|.+. |+.+.+.+++.+.||..++..+-++++.+.-+.-.+.-++ ..+..... +..-+=.+
T Consensus 158 Els~~L~~l~~~-------~~~~s~~~~k~esei~~Ik~lvln~~~f~~p~~p~~~p~ip~wqi~~~sp~~~~~~~~~~~ 230 (300)
T KOG2629|consen 158 ELSRALASLKNT-------LVQLSRNIEKLESEINTIKQLVLNMSNFAPPVAPSSAPSIPSWQIQAESPHHSSNRMTSTD 230 (300)
T ss_pred HHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHhcccccCCCCCcccCCCCchhhhccccchhhhccCCCCC
Confidence 999999888877 8899999999999999999999999977666655544444 22333222 22222234
Q ss_pred CCCCccccCCCCCCCCC
Q 009434 307 GKADFDMQSVRSSSPPA 323 (535)
Q Consensus 307 g~~~~d~~s~r~s~~p~ 323 (535)
...++||++.=.+||+.
T Consensus 231 ne~~s~~~~~p~sspe~ 247 (300)
T KOG2629|consen 231 NEKASDFATPPNSSPET 247 (300)
T ss_pred CcccccCCCCCCCCCcc
Confidence 46677777666666633
No 4
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=94.42 E-value=0.072 Score=49.22 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009434 161 WYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQEL 240 (535)
Q Consensus 161 WRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeL 240 (535)
|.-+.+-|+++|++||| |.-+|=.=+|-|+==||+ -|..--..+ -++++. +.+.++.+++.....+..|+.-+.++
T Consensus 5 ~~~~i~paa~~gavGY~-Y~wwKGws~sD~M~vTrr-~m~~A~~~v-~kql~~-vs~~l~~tKkhLsqRId~vd~klDe~ 80 (126)
T PF07889_consen 5 WSSLIVPAAAIGAVGYG-YMWWKGWSFSDLMFVTRR-SMSDAVASV-SKQLEQ-VSESLSSTKKHLSQRIDRVDDKLDEQ 80 (126)
T ss_pred ccchhhHHHHHHHHHhe-eeeecCCchhHHHHHHHH-hHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455668889999997 333555445555554555 333221111 234444 78888888899999999999888888
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 009434 241 LNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSN 280 (535)
Q Consensus 241 l~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id 280 (535)
.+.....+..+.++-.-++.+..+++++...+..|++.|+
T Consensus 81 ~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 81 KEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777778888888888888888888887663
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=92.76 E-value=0.98 Score=43.20 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=21.8
Q ss_pred CccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009434 156 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 192 (535)
Q Consensus 156 ~prrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkp 192 (535)
.|..||--|......+..++..+|+|++||++|-|..
T Consensus 22 mp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~ 58 (181)
T PRK13454 22 MPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGA 58 (181)
T ss_pred CCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776432222222333455688999999986655
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=91.25 E-value=2.1 Score=40.95 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009434 165 VLAVGLLAASGAGTAVFFKKSLIPRLKS 192 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~KrYIlP~Lkp 192 (535)
|+...+..++ +|.|+++|++|.|..
T Consensus 13 ifw~iI~FlI---Ly~ll~kf~~ppI~~ 37 (155)
T PRK06569 13 IFWLIVTFGL---LYIFVYKFITPKAEE 37 (155)
T ss_pred HHHHHHHHHH---HHHHHHHHhHHHHHH
Confidence 4444444444 588999999998887
No 7
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=91.05 E-value=2.1 Score=42.02 Aligned_cols=35 Identities=14% Similarity=0.355 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchh
Q 009434 163 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSE 206 (535)
Q Consensus 163 D~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~ 206 (535)
..|++ .+..++ +|+|.+||++|.|.. +||+..+.|
T Consensus 55 ~l~w~-~I~Fli---L~~lL~k~~~~pI~~-----vLe~R~~~I 89 (204)
T PRK09174 55 QLLWL-AITFGL---FYLFMSRVILPRIGG-----IIETRRDRI 89 (204)
T ss_pred HHHHH-HHHHHH---HHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 33444 444444 478899999986655 666555433
No 8
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=88.55 E-value=4.2 Score=38.50 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=20.4
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009434 158 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 192 (535)
Q Consensus 158 rrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkp 192 (535)
..||...|+.+..++-+ |.|.++|++|-|..
T Consensus 15 ~~~~~t~~~~iInFliL----~~lL~~~l~~pi~~ 45 (173)
T PRK13453 15 GVEWGTVIVTVLTFIVL----LALLKKFAWGPLKD 45 (173)
T ss_pred CCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 46788888776655555 55677777765554
No 9
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=87.18 E-value=6.1 Score=36.74 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 161 WYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 161 WRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
|...|++++.++- +|+|.++|++|-|.. .+++.++
T Consensus 8 ~~~~~~~~i~Fli----l~~ll~~~l~~pi~~-----~l~~R~~ 42 (164)
T PRK14471 8 FGLFFWQTILFLI----LLLLLAKFAWKPILG-----AVKERED 42 (164)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHhHHHHHH-----HHHHHHH
Confidence 7555555444333 366788888766655 5554444
No 10
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=85.93 E-value=7.2 Score=36.78 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchh
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSE 206 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~ 206 (535)
.+|...|+.+..+.-+ +.+.++|++|-|.. .+++.++.+
T Consensus 14 ~~~~~~~~~~i~Flil----~~iL~~~~~kpi~~-----~l~~R~~~I 52 (173)
T PRK13460 14 VNPGLVVWTLVTFLVV----VLVLKKFAWDVILK-----ALDERASGV 52 (173)
T ss_pred CcHhHHHHHHHHHHHH----HHHHHHHhHHHHHH-----HHHHHHHHH
Confidence 4676666654444443 44566666654443 555554433
No 11
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=84.97 E-value=1.1 Score=43.54 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 009434 170 LLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAA---------SDVAKASQEL 240 (535)
Q Consensus 170 V~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~---------sevakt~qeL 240 (535)
+++|+.||+.+++-|. -|+.+ -|| ..||..+.+=+.+..+.+.+.. .||+.|-..|
T Consensus 50 a~~~~~Yg~lYlYERL------tWT~~-----AKE----R~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL 114 (171)
T PF04799_consen 50 AVSGSLYGGLYLYERL------TWTNK-----AKE----RAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARL 114 (171)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHH------hcCch-----HHH----HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4667788888888774 68887 122 4566555555555555444333 2233232222
Q ss_pred H-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009434 241 L-------NSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 282 (535)
Q Consensus 241 l-------~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f 282 (535)
- ..-++|-+.|..-++.||++...+|.|++.-..|++.+++|
T Consensus 115 ~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 115 CQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22223333344445555555555666655555555444444
No 12
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=84.24 E-value=11 Score=34.85 Aligned_cols=30 Identities=7% Similarity=0.105 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 192 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkp 192 (535)
.||...|+.+..++-+ +.|.++|+++-|..
T Consensus 3 ~~~~~~~~~~inF~il----~~iL~~f~~kpi~~ 32 (159)
T PRK13461 3 INIPTIIATIINFIIL----LLILKHFFFDKIKA 32 (159)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHhHHHHHH
Confidence 5787666655544444 45566666654444
No 13
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=84.21 E-value=15 Score=39.86 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.6
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009434 157 SRFHWYHAVLAVGLLAASGAGTAVFFK 183 (535)
Q Consensus 157 prrDWRD~FIMAtV~gGvgYGlY~L~K 183 (535)
.++.|.=++|+..++.|+|+|+|++.+
T Consensus 33 ~~~g~~l~~~aili~la~g~g~y~~~~ 59 (390)
T PRK10920 33 NRTGLVLSAVAIAIALAAGAGLYYHGK 59 (390)
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 467888888888889999999998854
No 14
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=82.86 E-value=12 Score=35.30 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
.+|...|+.+..++-+ |.|.++|++|-|.. .+++.++
T Consensus 16 ~~~~~~~~~~i~Flil----~~lL~~~l~kpi~~-----~l~~R~~ 52 (175)
T PRK14472 16 PNPGLIFWTAVTFVIV----LLILKKIAWGPILS-----ALEEREK 52 (175)
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHHhHHHHHH-----HHHHHHH
Confidence 4566666655444433 55667777665544 5554444
No 15
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=82.52 E-value=54 Score=37.55 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 009434 160 HWYHAVLAVGLLAASGAGTAVFFK 183 (535)
Q Consensus 160 DWRD~FIMAtV~gGvgYGlY~L~K 183 (535)
.+.=||++..+++|+|.|+|.+-+
T Consensus 323 ~~~~~~~~l~~~~~~g~~~~~~~q 346 (656)
T PRK06975 323 SAALWFVVVVLACAAAVGGYALNR 346 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999995444
No 16
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=80.55 E-value=17 Score=33.80 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
.+|...|+....+.-+ ++|.++|+++-|.. .+++.++
T Consensus 6 ~~~~~~~~~~inflil----~~lL~~fl~kpi~~-----~l~~R~~ 42 (164)
T PRK14473 6 INLGLLIAQLINFLLL----IFLLRTFLYRPVLN-----LLNERTR 42 (164)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----HHHHHHH
Confidence 5676555554444444 55666666655444 4554444
No 17
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=80.18 E-value=35 Score=28.82 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 217 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 217 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
+|..+..+.....+..+.+-+.++++.-++-..-....++.++...+.++.+..++++|.
T Consensus 29 ~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 29 DEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444434444433222222234445555555666666666666554
No 18
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=79.61 E-value=16 Score=34.48 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009434 165 VLAVGLLAASGAGTAVFFKKSLIPRLKS 192 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~KrYIlP~Lkp 192 (535)
|+..++..++ +|+|.++|++|-|..
T Consensus 9 ~~~~~i~F~i---ll~ll~~~~~~pi~~ 33 (161)
T COG0711 9 ILWQLIAFVI---LLWLLKKFVWKPILK 33 (161)
T ss_pred HHHHHHHHHH---HHHHHHHHhHHHHHH
Confidence 4443444444 467788888866655
No 19
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=79.44 E-value=15 Score=36.68 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 192 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkp 192 (535)
.||...|+....+.-+ ++|.++|+++-|..
T Consensus 3 id~~t~~~qiInFlil----~~lL~kfl~kPi~~ 32 (246)
T TIGR03321 3 IDWFTVIAQLINFLIL----VWLLKRFLYRPILD 32 (246)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHhHHHHHH
Confidence 5787777665544444 55666666654444
No 20
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=78.72 E-value=17 Score=36.80 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 192 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkp 192 (535)
.||..+|+.+..+.-+ ++|.++|+++-|..
T Consensus 3 id~~t~~~qiInFlIL----v~lL~~fl~kPi~~ 32 (250)
T PRK14474 3 IDWFTVVAQIINFLIL----VYLLRRFLYKPIIQ 32 (250)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4787777776655555 45666666544433
No 21
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=77.97 E-value=21 Score=33.18 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 163 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 163 D~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
++|++.+.+. -+++|.++|+++-|.. .+++.++
T Consensus 24 t~~~~~inFl----iL~~lL~k~l~~Pi~~-----~l~~R~~ 56 (156)
T CHL00118 24 TLPLMALQFL----LLMVLLNIILYKPLLK-----VLDERKE 56 (156)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 4555544333 3467788988877655 4554444
No 22
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=77.22 E-value=41 Score=31.71 Aligned_cols=28 Identities=14% Similarity=-0.175 Sum_probs=14.6
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSL 186 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYI 186 (535)
.+|..++....-+.-+.+.+|+|..++|
T Consensus 17 ~~~~~~~~~iinflIl~~lL~~fl~kpI 44 (174)
T PRK07352 17 LNLNLLETNLINLAIVIGLLYYFGRGFL 44 (174)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4565444444444444555566665554
No 23
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=76.88 E-value=26 Score=32.38 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=21.0
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
.+|...|+.+ +...+ +|+|.++|++|-|.. .+|+.++
T Consensus 5 l~~~~~~~ql-i~Fli---l~~~l~kfl~kPi~~-----~l~~R~~ 41 (141)
T PRK08476 5 VNPYLMLATF-VVFLL---LIVILNSWLYKPLLK-----FMDNRNA 41 (141)
T ss_pred ccHHHHHHHH-HHHHH---HHHHHHHHHHHHHHH-----HHHHHHH
Confidence 4665443333 33333 577889988876655 5554444
No 24
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=76.83 E-value=5 Score=35.58 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHH
Q 009434 162 YHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAA 223 (535)
Q Consensus 162 RD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ 223 (535)
-|.|+.++++.=|+|-+|.++|||-+|-=.++-.+-.|+.+ ..-|+.++-..|..+.
T Consensus 4 ~Da~~~~V~V~IVclliya~YRR~~i~~p~~~r~~D~L~~~-----ds~F~D~lTpDQVrAl 60 (92)
T PHA02681 4 LDALLTVIVISIVCYIVIMMYRRSCVSAPAVPRNKDLLPPG-----ASSFEDKMTDDQVRAF 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCC-----CchhhccCCHHHHHHH
Confidence 48899999999999999999999966644433222123322 2456666555555544
No 25
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=74.88 E-value=33 Score=30.81 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
+|| .+|+|++.+. -+++|.++++++-|.. .+++-++
T Consensus 4 ~~~-t~~~~~i~fl----il~~ll~~~l~~pi~~-----~l~~R~~ 39 (140)
T PRK07353 4 FDA-TLPLMAVQFV----LLTFILNALFYKPVGK-----VVEERED 39 (140)
T ss_pred cch-hHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 454 3566654433 3466778877766554 5555544
No 26
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=74.51 E-value=26 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.040 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 163 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 163 D~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
+-|+..+|...+.+++.+ +++|+++-|.. .||+-.+
T Consensus 9 ~~~~w~~i~f~il~~iL~-~~k~l~~pi~~-----~le~R~~ 44 (167)
T PRK14475 9 NPEFWVGAGLLIFFGILI-ALKVLPKALAG-----ALDAYAA 44 (167)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHhHHHHHH-----HHHHHHH
Confidence 334444445555544322 24555544333 5555544
No 27
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=74.50 E-value=16 Score=34.86 Aligned_cols=28 Identities=7% Similarity=-0.055 Sum_probs=25.0
Q ss_pred CccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009434 156 MSRFHWYHAVLAVGLLAASGAGTAVFFK 183 (535)
Q Consensus 156 ~prrDWRD~FIMAtV~gGvgYGlY~L~K 183 (535)
.|++-|..+-..|+++|.++||+|.+.+
T Consensus 28 ~pk~~~Sg~t~~aa~~gatayG~~~~~~ 55 (146)
T KOG3300|consen 28 IPKTGPSGMTMFAAVSGATAYGMYQVGQ 55 (146)
T ss_pred CCccCCCcchhhhHHHHHHHHHHHHHHh
Confidence 5788999999999999999999998764
No 28
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.13 E-value=17 Score=37.20 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=28.9
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009434 157 SRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 189 (535)
Q Consensus 157 prrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~ 189 (535)
.+-+|+.+++.+.++.-+.+++|++++.|..|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (346)
T PRK10476 6 KKSPRKKLPALAIVALAIVALVFVIWRTDSAPS 38 (346)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHheccCceEe
Confidence 456899999999999999999999999888875
No 29
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=73.44 E-value=34 Score=31.26 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=13.2
Q ss_pred HHHHHHHhhcccccccchhhccccccc
Q 009434 178 TAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 178 lY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
+|++.+++++|-|.. .+++-++
T Consensus 17 l~~il~~~~~~pi~~-----~l~~R~~ 38 (156)
T PRK05759 17 LVWFIMKFVWPPIMK-----ALEERQK 38 (156)
T ss_pred HHHHHHHHhHHHHHH-----HHHHHHH
Confidence 466677777766555 5554444
No 30
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.22 E-value=36 Score=38.06 Aligned_cols=55 Identities=11% Similarity=0.159 Sum_probs=28.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 215 LAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 215 i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
|.+-....+ .+.+.+++++.+.+.+|... +..+.+.++..+..|+.|..++..|+
T Consensus 62 FddkVnqSALteqQ~kasELEKqLaaLrqE-------lq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRE-------LDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 444444433 44555677777777776433 33344444444555555555555555
No 31
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=71.98 E-value=36 Score=32.59 Aligned_cols=34 Identities=3% Similarity=-0.098 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 163 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 163 D~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
|.|+...|...+. +.|+++|++.-|. + .||+..+
T Consensus 5 ~~~fwq~I~FlIl---l~ll~kfawkPI~----~-~LeeR~~ 38 (154)
T PRK06568 5 DESFWLAVSFVIF---VYLIYRPAKKAIL----N-SLDAKIL 38 (154)
T ss_pred HhHHHHHHHHHHH---HHHHHHHhHHHHH----H-HHHHHHH
Confidence 4555555555553 4457777754444 3 5665544
No 32
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=70.22 E-value=5.3 Score=31.16 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHh
Q 009434 158 RFHWYHAVLAVGLLAASGAGTAVFFKKS 185 (535)
Q Consensus 158 rrDWRD~FIMAtV~gGvgYGlY~L~KrY 185 (535)
++++..||+.+.++.|++.|+|.++|.+
T Consensus 27 ~~~t~p~~~~~g~llG~~~g~~~~~~~~ 54 (55)
T PF09527_consen 27 WFGTSPWFTLIGLLLGIAAGFYNVYRLV 54 (55)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999999864
No 33
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=70.05 E-value=42 Score=29.34 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=10.7
Q ss_pred HHHHHHhhcccccccchhhccccccchh
Q 009434 179 AVFFKKSLIPRLKSWIRKVVLEEEDDSE 206 (535)
Q Consensus 179 Y~L~KrYIlP~Lkpptrs~~LE~Dke~~ 206 (535)
|.|..+|++|-|.. .|++.++.+
T Consensus 13 ~~~l~~~~~~pi~~-----~l~~R~~~I 35 (132)
T PF00430_consen 13 FFLLNKFLYKPIKK-----FLDERKAKI 35 (132)
T ss_dssp HHHHHHHTHHHHHH-----HCS--S-HH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 44566666554444 555555444
No 34
>PRK11637 AmiB activator; Provisional
Probab=68.65 E-value=19 Score=38.35 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 009434 251 FSELMNLLDVQLQEMKSMSNSIRK 274 (535)
Q Consensus 251 L~~ltk~ld~q~~ElKSl~~si~~ 274 (535)
+..+-+.|+.+.+.|+.+..++-.
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555556665555544
No 35
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=67.49 E-value=19 Score=38.17 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=46.6
Q ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhcCC
Q 009434 211 AKPSLAEEAAAAAKAAAAAASDVAKASQ----ELLNSKNEERRYFSELMNLLDVQLQEMKSMSN--------SIRKLEGP 278 (535)
Q Consensus 211 ~k~~i~eE~aea~ka~aaa~sevakt~q----eLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~--------si~~L~~~ 278 (535)
.+.-|.+|+...+|.+-.+|.+|..-+. .||+.-++.|.--..+..++.+...|||-|+. .|..|+.-
T Consensus 172 Yr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRad 251 (302)
T PF07139_consen 172 YRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRAD 251 (302)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4455667777777777777777764432 13333334343345666677777777777765 46666666
Q ss_pred CCccCCCc
Q 009434 279 SNNSGRTS 286 (535)
Q Consensus 279 id~f~~~~ 286 (535)
|..|+.+.
T Consensus 252 IK~fvs~r 259 (302)
T PF07139_consen 252 IKHFVSER 259 (302)
T ss_pred HHHHhhhh
Confidence 76676644
No 36
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=65.79 E-value=87 Score=33.35 Aligned_cols=13 Identities=38% Similarity=0.281 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHH
Q 009434 169 GLLAASGAGTAVF 181 (535)
Q Consensus 169 tV~gGvgYGlY~L 181 (535)
.+++|+|+|+|++
T Consensus 38 ll~~alg~~~~~~ 50 (372)
T PF04375_consen 38 LLALALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 3337778888777
No 37
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=64.46 E-value=51 Score=35.82 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009434 216 AEEAAAAAKAAAAAASDVAKASQELLNS 243 (535)
Q Consensus 216 ~eE~aea~ka~aaa~sevakt~qeLl~s 243 (535)
.+|...+..+...+..+|...+.+|-..
T Consensus 177 ~dE~g~L~~~~n~M~~~L~~~~~~l~~~ 204 (569)
T PRK10600 177 RDEMAMLGTALNNMSAELAESYAVLEQR 204 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777776533
No 38
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=63.91 E-value=44 Score=36.51 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009434 165 VLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
||+-.+...+ +++|.++|++|-|.. .+++-++
T Consensus 4 ~i~qlInFlI---l~~lL~kfl~~Pi~~-----~l~~R~~ 35 (445)
T PRK13428 4 FIGQLIGFAV---IVFLVWRFVVPPVRR-----LMAARQD 35 (445)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH-----HHHHHHH
Confidence 5554554444 466788888876665 4554444
No 39
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=63.70 E-value=13 Score=34.71 Aligned_cols=29 Identities=7% Similarity=-0.188 Sum_probs=25.7
Q ss_pred CccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009434 156 MSRFHWYHAVLAVGLLAASGAGTAVFFKK 184 (535)
Q Consensus 156 ~prrDWRD~FIMAtV~gGvgYGlY~L~Kr 184 (535)
.|++-|+.+.+++++++-.+||+|.+.+.
T Consensus 24 ~p~rg~sg~~~~~~~~~~~~~G~y~~~~~ 52 (130)
T PF06212_consen 24 LPKRGPSGWTMFAGGAGIMAYGFYKVGQG 52 (130)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999873
No 40
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=63.41 E-value=84 Score=30.96 Aligned_cols=12 Identities=0% Similarity=-0.349 Sum_probs=5.3
Q ss_pred HHHHHHhhcccc
Q 009434 179 AVFFKKSLIPRL 190 (535)
Q Consensus 179 Y~L~KrYIlP~L 190 (535)
+.|.++|+++-|
T Consensus 62 v~lL~k~l~kPi 73 (205)
T PRK06231 62 LLLGIFLFWKPT 73 (205)
T ss_pred HHHHHHHHHHHH
Confidence 334445544433
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.33 E-value=34 Score=35.62 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 215 LAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 215 i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
.+.+..+.++.++..+.+|+.-+.+++...++.+ .-.+....|||.+...|..|+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~-------~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ-------KEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788888888888888888887644443 444444555555555555555
No 42
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=62.11 E-value=3.5 Score=33.61 Aligned_cols=32 Identities=9% Similarity=-0.087 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhccccccc
Q 009434 160 HWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSW 193 (535)
Q Consensus 160 DWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpp 193 (535)
+=-+.-...++.+|+||-+|..+| ++|.|+|+
T Consensus 11 ~t~e~~~~~va~~G~gY~iYR~vR--mlPSL~PP 42 (54)
T PF15654_consen 11 STAETAAKIVAGVGAGYLIYRGVR--MLPSLFPP 42 (54)
T ss_pred hHHHHhhhheeecchhhhhhhHHh--hcccccCc
Confidence 334556666778899999999988 68888884
No 43
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.59 E-value=1.1e+02 Score=27.32 Aligned_cols=21 Identities=10% Similarity=-0.197 Sum_probs=14.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 009434 166 LAVGLLAASGAGTAVFFKKSL 186 (535)
Q Consensus 166 IMAtV~gGvgYGlY~L~KrYI 186 (535)
|++++++++++..+.|.|+|+
T Consensus 12 i~a~~~~~~~~~~~~l~~~~a 32 (106)
T PF10805_consen 12 IWAVFGIAGGIFWLWLRRTYA 32 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 566665566666677777774
No 44
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=59.82 E-value=60 Score=29.43 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=12.5
Q ss_pred HHHHHHHhhcccccccchhhccccccc
Q 009434 178 TAVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 178 lY~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
+++|.++|++|-|.. .|++-++
T Consensus 8 l~~il~~~~~~pi~~-----~l~~R~~ 29 (147)
T TIGR01144 8 LVWFCMKYVWPPLAK-----AIETRQK 29 (147)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHH
Confidence 455666766665544 5555544
No 45
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=58.80 E-value=11 Score=29.48 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009434 247 ERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 282 (535)
Q Consensus 247 ekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f 282 (535)
||+.++++-++|=..+.|+|.-+.+|+++..+||.+
T Consensus 2 ek~~ieelkqll~rle~eirett~sl~ninksidq~ 37 (46)
T PF08181_consen 2 EKKKIEELKQLLWRLENEIRETTDSLRNINKSIDQY 37 (46)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456688888999999999999999999999888654
No 46
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.49 E-value=1.4e+02 Score=28.05 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhcccccccchhh-ccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHH
Q 009434 175 GAGTAVFFKKSLIPRLKSWIRKV-VLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKA 236 (535)
Q Consensus 175 gYGlY~L~KrYIlP~Lkpptrs~-~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt 236 (535)
+.|+|.+.++--.+...+..... .++.+.. ..+..+ ..+.+|..++.+...+..+++.+.
T Consensus 54 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~l-~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 54 SLGLLCLLSKRPVQSVRPQQIEEPRLQGELS-ELQQQL-QQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHccccccchHHHHHhhhhhhhHH-hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777666632221 1111111 111112 224555555555555555555433
No 47
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=56.64 E-value=1.3e+02 Score=32.64 Aligned_cols=11 Identities=18% Similarity=0.011 Sum_probs=4.8
Q ss_pred HHHHHHhhccc
Q 009434 179 AVFFKKSLIPR 189 (535)
Q Consensus 179 Y~L~KrYIlP~ 189 (535)
|.+.|+.+-|+
T Consensus 210 ~~i~~~i~~pl 220 (553)
T PRK15048 210 YGIRRMLLTPL 220 (553)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 48
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=55.33 E-value=1.1e+02 Score=34.58 Aligned_cols=15 Identities=7% Similarity=-0.204 Sum_probs=9.7
Q ss_pred hHHHHHHHHHhhccc
Q 009434 175 GAGTAVFFKKSLIPR 189 (535)
Q Consensus 175 gYGlY~L~KrYIlP~ 189 (535)
++.+|.++|+..-|+
T Consensus 192 ~~~~~~~~r~i~~pl 206 (919)
T PRK11107 192 LLFAFRLMRDVTGPI 206 (919)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455667777766665
No 49
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.66 E-value=35 Score=38.15 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhccccc
Q 009434 165 VLAVGLLAASGAGTAVFFKKSLIPRLK 191 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~KrYIlP~Lk 191 (535)
+|+..|+.-++|++.+++||..+=.|-
T Consensus 2 iI~iivi~l~~~~~~~~~rk~~~k~i~ 28 (560)
T PF06160_consen 2 IIGIIVIVLIIYIIGYIYRKRYYKEID 28 (560)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777788888765543
No 50
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=54.03 E-value=1.6e+02 Score=27.23 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.1
Q ss_pred ccccccc
Q 009434 198 VLEEEDD 204 (535)
Q Consensus 198 ~LE~Dke 204 (535)
.++.-++
T Consensus 30 ~l~~R~~ 36 (159)
T PRK09173 30 SLDARAD 36 (159)
T ss_pred HHHHHHH
Confidence 4444443
No 51
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=53.50 E-value=62 Score=26.64 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 009434 216 AEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSN 280 (535)
Q Consensus 216 ~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id 280 (535)
..++....+..........+.++.+...+=. .|...++.+..++.+|..|...|..|...+.
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~---~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYR---DFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555544332 2777888888888888888777777765443
No 52
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=53.12 E-value=18 Score=33.99 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=26.1
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhcccc
Q 009434 158 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRL 190 (535)
Q Consensus 158 rrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~L 190 (535)
.-+|+-.|-.++++.|++.+++.+.|.|+.|-+
T Consensus 71 ~gewk~v~~~~~~~i~~s~~l~~~~r~~~~~~~ 103 (142)
T PF02936_consen 71 TGEWKKVFGGVFIFIGFSVLLFIWQRSYVYPPL 103 (142)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999998763
No 53
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=52.97 E-value=8.9 Score=32.52 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=27.9
Q ss_pred HhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhh
Q 009434 65 KFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRR 100 (535)
Q Consensus 65 ~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~r 100 (535)
..|.||..+..=++.-.+||++-|||+||++..+.|
T Consensus 11 ~~~~~~~~re~f~~dp~a~~~~~~Lt~eE~~al~~r 46 (77)
T cd07321 11 QLLVKPEVKERFKADPEAVLAEYGLTPEEKAALLAR 46 (77)
T ss_pred HHhcCHHHHHHHHhCHHHHHHHcCCCHHHHHHHHcC
Confidence 345556666666666689999999999999998866
No 54
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=52.20 E-value=41 Score=35.58 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009434 231 SDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIR 273 (535)
Q Consensus 231 sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~ 273 (535)
.++..++.++-.+ |....+.++.+.+++++|+.+|.
T Consensus 70 ~ql~~~~~k~~~s-------i~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 70 TQLRANIAKAEES-------IAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666 44444444555555555555543
No 55
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.64 E-value=78 Score=33.99 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 009434 230 ASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGP 278 (535)
Q Consensus 230 ~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~ 278 (535)
.+++.++.+.....-+|..+....-.+++++|.+.||+++.+|.+++.+
T Consensus 13 fq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 13 FQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445555555554445555556677788888888888888888888754
No 56
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=50.25 E-value=1.5e+02 Score=28.99 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHh
Q 009434 165 VLAVGLLAASGAGTAVFFKKS 185 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~KrY 185 (535)
+|.+.+++.||+|+.+|+.++
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~ 23 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKK 23 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455554444443
No 57
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=49.07 E-value=1.9e+02 Score=27.62 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=5.2
Q ss_pred cchhHHHHH
Q 009434 158 RFHWYHAVL 166 (535)
Q Consensus 158 rrDWRD~FI 166 (535)
.++|.++|.
T Consensus 24 ~~~~t~~~~ 32 (184)
T PRK13455 24 SLSNTDFVV 32 (184)
T ss_pred CCcchHHHH
Confidence 356766643
No 58
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=46.85 E-value=1.2e+02 Score=32.11 Aligned_cols=12 Identities=8% Similarity=-0.604 Sum_probs=6.7
Q ss_pred HHHHhHHHHHHH
Q 009434 171 LAASGAGTAVFF 182 (535)
Q Consensus 171 ~gGvgYGlY~L~ 182 (535)
.+|..|++|.=+
T Consensus 32 ~AgA~Y~~yQ~~ 43 (301)
T PF06120_consen 32 GAGAWYYFYQNA 43 (301)
T ss_pred HHHHHHHHHHHH
Confidence 345557666543
No 59
>PRK09793 methyl-accepting protein IV; Provisional
Probab=45.99 E-value=2e+02 Score=31.46 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009434 252 SELMNLLDVQLQEMKSMSNSIRKLEGPS 279 (535)
Q Consensus 252 ~~ltk~ld~q~~ElKSl~~si~~L~~~i 279 (535)
.++....+.|...+..+..++..|...+
T Consensus 285 ~~ls~~~e~qa~~~~~~~~s~~~~~~~~ 312 (533)
T PRK09793 285 NDLSSRTEQQAASLAQTAASMEQLTATV 312 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554333
No 60
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=45.37 E-value=1.6e+02 Score=27.24 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009434 215 LAEEAAAAAKAAAAAASDVAKASQELLNS 243 (535)
Q Consensus 215 i~eE~aea~ka~aaa~sevakt~qeLl~s 243 (535)
+.+|...++......+.+|...+.++...
T Consensus 80 vA~eir~LA~~t~~~~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 80 VADEIRKLAEQTSESAKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhhh
Confidence 56677777766666666666665555533
No 61
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=45.12 E-value=1.6e+02 Score=28.01 Aligned_cols=21 Identities=0% Similarity=-0.138 Sum_probs=10.2
Q ss_pred HHHHHHhhcccccccchhhccccccc
Q 009434 179 AVFFKKSLIPRLKSWIRKVVLEEEDD 204 (535)
Q Consensus 179 Y~L~KrYIlP~Lkpptrs~~LE~Dke 204 (535)
+.|.++|++ .|+.+ .+++.++
T Consensus 36 ~~lL~~fl~----kPi~~-~l~~R~~ 56 (167)
T PRK08475 36 VGILWYFAA----KPLKN-FYKSRIN 56 (167)
T ss_pred HHHHHHHHH----HHHHH-HHHHHHH
Confidence 334444443 45555 5555544
No 62
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=45.04 E-value=1.3e+02 Score=29.25 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009434 174 SGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAA--KAAAAAASDVAKASQELLNSKNEERRYF 251 (535)
Q Consensus 174 vgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~--ka~aaa~sevakt~qeLl~sk~eekk~L 251 (535)
|.-++..|-..||-.+|-.+.++..++.-.+..+..-++....+-.-..+ .+..-.+..+-+..+.|..+.-.+--+|
T Consensus 13 v~eal~~L~~~~lP~~~~~~~~~~~~~rl~~~m~~~~~~~~~~~a~~g~vd~~~L~~va~~~~~~lkrl~~s~~kg~~ll 92 (160)
T PF15005_consen 13 VVEALKSLRHDYLPSHLHVEGLQARAQRLLLEMEDFFFLPYAEDAFMGVVDEDTLDKVAWSFKNQLKRLTDSDLKGEPLL 92 (160)
T ss_pred HHHHHHHHHHHhCccccCcchHHHHHHHHHHHhhCccccccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCCcccchHH
Confidence 33456789999999998888888777665544433333332111111111 2333334455567788888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009434 252 SELMNLLDVQLQEMKSMSNSI 272 (535)
Q Consensus 252 ~~ltk~ld~q~~ElKSl~~si 272 (535)
.+|...|..|.++||.+..+.
T Consensus 93 ~EL~~~r~~~~~~lk~~lk~f 113 (160)
T PF15005_consen 93 KELVWMRQNQKKELKKALKQF 113 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999885543
No 63
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=44.99 E-value=2.2e+02 Score=28.71 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSL 186 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYI 186 (535)
-.|+-++++.-++.++.+|++++.+.--
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 29 (334)
T TIGR00998 2 KYFLLLLVVLLIVVAGAYAIYWFLVLRD 29 (334)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3577777777777777788877655433
No 64
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.44 E-value=2.1e+02 Score=26.24 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009434 236 ASQELLNSKNEERRYFSELMNLLDVQLQEMKSM 268 (535)
Q Consensus 236 t~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl 268 (535)
+-++|-.-+.+--..|.++.++|+.+.+..+.|
T Consensus 37 ~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l 69 (128)
T PF06295_consen 37 AKQELEQYKQEVNDHFAQTAELLDNLTQDYQKL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455556777777777777777777
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.11 E-value=1.1e+02 Score=34.33 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 250 YFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 250 ~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
.|.++-..|+..+..++.+...|..|.
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~ 132 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELL 132 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777777777777776665
No 66
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.04 E-value=46 Score=37.60 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHh--HHHHHHHHHhhc
Q 009434 160 HWYHAVLAVGLLAASG--AGTAVFFKKSLI 187 (535)
Q Consensus 160 DWRD~FIMAtV~gGvg--YGlY~L~KrYIl 187 (535)
.|-|-|+-+.|+.|+. |-+|.+.||+|+
T Consensus 367 ~l~d~~~p~avfya~v~P~~s~F~l~k~v~ 396 (546)
T KOG0718|consen 367 HLCDELLPSAVFYALVFPITSYFGLKKFVL 396 (546)
T ss_pred EeechhhhhhhhhhhhHHHHHHHHHHHHee
Confidence 5778899888888875 667888899875
No 67
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=40.99 E-value=41 Score=24.63 Aligned_cols=24 Identities=0% Similarity=-0.305 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 009434 160 HWYHAVLAVGLLAASGAGTAVFFK 183 (535)
Q Consensus 160 DWRD~FIMAtV~gGvgYGlY~L~K 183 (535)
.|.||+-.|..++=+.|-+|-|.|
T Consensus 2 ~~~~wls~a~a~~Lf~YLv~ALlR 25 (29)
T PRK14740 2 TVLDWLSLALATGLFVYLLVALLR 25 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 599999888888888899888876
No 68
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=39.28 E-value=2e+02 Score=30.58 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=13.9
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHH
Q 009434 157 SRFHWYHAVLAVGLLAASGAGTAV 180 (535)
Q Consensus 157 prrDWRD~FIMAtV~gGvgYGlY~ 180 (535)
.+++|+=.++.+.+++|+++++|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~ 42 (390)
T PRK15136 19 KRKRALLLLTLLFIIIGVAYGIYW 42 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666566655554
No 69
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=38.83 E-value=2.7e+02 Score=31.69 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.6
Q ss_pred HHHHHHHHHhh
Q 009434 176 AGTAVFFKKSL 186 (535)
Q Consensus 176 YGlY~L~KrYI 186 (535)
..++++++++|
T Consensus 311 ~~~~~~~~~~i 321 (921)
T PRK15347 311 SVLFLLLRRYL 321 (921)
T ss_pred HHHHHHHHHHH
Confidence 34455555555
No 70
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=38.49 E-value=3.5e+02 Score=29.95 Aligned_cols=13 Identities=23% Similarity=-0.151 Sum_probs=6.1
Q ss_pred HhHHHHHHHHHhh
Q 009434 174 SGAGTAVFFKKSL 186 (535)
Q Consensus 174 vgYGlY~L~KrYI 186 (535)
++.++++++.|+|
T Consensus 206 ~~~~~~~~i~~~I 218 (554)
T PRK15041 206 VIFAVWFGIKASL 218 (554)
T ss_pred HHHHHHHHHHHHH
Confidence 3444454445544
No 71
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=37.32 E-value=30 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccccccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSW 193 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpp 193 (535)
|.||-..|.++++|.+|..+|-+ ||-|++.++
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi---~~~Pmm~~e 34 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPI---YFRPMMNPE 34 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhh---hcccccChH
Confidence 67999999999999998776654 688998883
No 72
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=36.36 E-value=3.3e+02 Score=26.41 Aligned_cols=15 Identities=0% Similarity=0.127 Sum_probs=8.6
Q ss_pred cccccchhhccccccc
Q 009434 189 RLKSWIRKVVLEEEDD 204 (535)
Q Consensus 189 ~Lkpptrs~~LE~Dke 204 (535)
+++|+... .++...+
T Consensus 30 f~~ppI~~-iLe~R~~ 44 (155)
T PRK06569 30 FITPKAEE-IFNNRQT 44 (155)
T ss_pred HhHHHHHH-HHHHHHH
Confidence 44566666 5555544
No 73
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=35.93 E-value=46 Score=27.99 Aligned_cols=43 Identities=7% Similarity=-0.047 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc--cchhhcccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS--WIRKVVLEE 201 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkp--ptrs~~LE~ 201 (535)
.|---|+--..-+..+...+|.+..||++|+|.. ..|....+.
T Consensus 4 Ld~~~f~sQ~~Wl~i~f~~ly~l~s~~iLPri~~~l~~R~~~~~~ 48 (67)
T MTH00169 4 LDSVTYLTQYIWTLIILFFLFSLLVNYILPKIQQQLVIRTKGVNS 48 (67)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333333334445699999999999987 444433333
No 74
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=35.09 E-value=62 Score=27.64 Aligned_cols=22 Identities=5% Similarity=0.184 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 009434 255 MNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 255 tk~ld~q~~ElKSl~~si~~L~ 276 (535)
..++..+...|..|...+..|.
T Consensus 35 ~sa~~~l~s~l~~l~~~~~~L~ 56 (99)
T PF02465_consen 35 QSAYGSLNSKLSTLQSALSDLN 56 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444
No 75
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=34.57 E-value=52 Score=30.86 Aligned_cols=30 Identities=7% Similarity=-0.116 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIP 188 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP 188 (535)
-+|+-.|-.+.++.|++.+++.+.|.|++|
T Consensus 72 ~ewk~v~~~~~~~i~~s~~~~~~~r~~~~~ 101 (136)
T cd00922 72 GEWKTVFGGVLAFIGITGVIFGLQRAFVYG 101 (136)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 389999988888889999999999999943
No 76
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=34.48 E-value=2.6e+02 Score=32.25 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcC-----cCHHHHHHHHHHHHHHHHHHHHHHH
Q 009434 163 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAK-----PSLAEEAAAAAKAAAAAASDVAKAS 237 (535)
Q Consensus 163 D~FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k-----~~i~eE~aea~ka~aaa~sevakt~ 237 (535)
.+|+|..++.++.|-+|++-++-|.|+..=-.-. .-+...+|. .. .+|...+.++-..+..|+.+-=
T Consensus 153 ~~~~~~~~~~~~~~~i~~lr~~vv~Pl~~L~~~a-------~ri~~r~F~~~~~~t~-~~Elg~L~~~FNqMs~EL~~lY 224 (574)
T COG3850 153 QLAGMLLILLLVVFTIYWLRRRVVRPLNQLTSAA-------QRIGRRQFDQRPTDTG-RNELGLLGRAFNQMSGELKKLY 224 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccCCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999986542222 112234444 22 6777777777777777775444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 238 QELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 238 qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
..|= .. ..+.|+.|....+.|.-|=.+=+.|-
T Consensus 225 ~~LE-~r------V~eKT~~L~~~Nq~Ls~LYqssr~L~ 256 (574)
T COG3850 225 ADLE-QR------VEEKTRDLEQKNQRLSFLYQSSRRLH 256 (574)
T ss_pred HHHH-HH------HHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 4433 32 34557777777777777655544444
No 77
>PRK06770 hypothetical protein; Provisional
Probab=33.74 E-value=1.9e+02 Score=28.85 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 009434 228 AAASDVAKASQELLNSKNE 246 (535)
Q Consensus 228 aa~sevakt~qeLl~sk~e 246 (535)
.+-.+|.++|+.|.++|..
T Consensus 67 ~tE~~ii~~MH~MtHQKV~ 85 (180)
T PRK06770 67 STEEEIITAMHKMTHQKVK 85 (180)
T ss_pred cCHHHHHHHHHHHHhhhhh
Confidence 3456778888888877653
No 78
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.68 E-value=2.9e+02 Score=27.54 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=7.9
Q ss_pred hHHHHHHHHhh
Q 009434 335 SYMEIMAMVQR 345 (535)
Q Consensus 335 sy~eim~m~qr 345 (535)
-|--||++++.
T Consensus 150 k~r~vlea~~~ 160 (251)
T PF11932_consen 150 KFRRVLEAYQI 160 (251)
T ss_pred HHHHHHHHHHH
Confidence 47778877765
No 79
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.48 E-value=3.7e+02 Score=26.29 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q 009434 164 AVLAVGLLAASGAGTAVFFKKSL 186 (535)
Q Consensus 164 ~FIMAtV~gGvgYGlY~L~KrYI 186 (535)
.+++++|.+|+||.+....-+..
T Consensus 6 ~i~~~~vG~~~G~~~~~~~~~~~ 28 (201)
T PF12072_consen 6 AIVALIVGIGIGYLVRKKINRKK 28 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777877766655544
No 80
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.56 E-value=1.3e+02 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 251 FSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 251 L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
|+-+.+-|=+ ..||-+|...|++..
T Consensus 89 ~~~llrQLPs-~tEmp~Ll~dv~q~G 113 (211)
T COG3167 89 FDILLRQLPS-DTEMPNLLADVNQAG 113 (211)
T ss_pred HHHHHHhCCc-ccchhHHHHHHHHhh
Confidence 4444444433 357888888887665
No 81
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=32.49 E-value=4.7e+02 Score=25.30 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 009434 252 SELMNLLDVQLQEMKSMSNSIRKLEGPSNN 281 (535)
Q Consensus 252 ~~ltk~ld~q~~ElKSl~~si~~L~~~id~ 281 (535)
..+...|....-++..|...|..++..|++
T Consensus 152 ~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 152 DELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 445566666677788888888888766643
No 82
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=32.32 E-value=40 Score=33.12 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009434 158 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 192 (535)
Q Consensus 158 rrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~Lkp 192 (535)
.-.|+-.|+.++++.|++.++..+.+.|++|-+-.
T Consensus 96 ~~ewKtv~g~~~~f~Gl~~~v~l~~~v~vy~~~P~ 130 (167)
T KOG4075|consen 96 SNEWKTVFGVAGFFLGLTISVILFGKVRVYGPLPK 130 (167)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHhheecCCCCc
Confidence 46799999999999999999999999998887644
No 83
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=32.30 E-value=2.9e+02 Score=29.90 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=26.0
Q ss_pred CccchhHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 009434 156 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIP 188 (535)
Q Consensus 156 ~prrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP 188 (535)
..++.|+-.+..+++++|+.||+|++.-.|-.|
T Consensus 10 ~~~k~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 42 (352)
T COG1566 10 AKRKRFKLPLTLLVVLAAVLYGGLIWLYYRNHP 42 (352)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 356788888888899999999998887666544
No 84
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=31.83 E-value=58 Score=32.29 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009434 218 EAAAAAKAAAAAASDVAKASQELLNSKNEER 248 (535)
Q Consensus 218 E~aea~ka~aaa~sevakt~qeLl~sk~eek 248 (535)
.+++++...++....-++.-++-+...+|+|
T Consensus 84 a~eaAR~RmQEE~dakA~~~kEKq~q~EEEK 114 (190)
T PF06936_consen 84 AMEAARRRMQEELDAKAEEYKEKQKQEEEEK 114 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555544444444444444443
No 85
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=31.78 E-value=17 Score=31.62 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=22.3
Q ss_pred CCCCCCchHHHHHHHHhcCCCHHHHHHHHhh
Q 009434 70 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRR 100 (535)
Q Consensus 70 P~V~~SPl~kKi~FLesKGLT~eEId~Al~r 100 (535)
|..+..=++.-.+|++.-|||++|++..+.+
T Consensus 17 p~~rerF~~DPea~~~~~gLt~eE~~aL~~~ 47 (81)
T cd07922 17 PGLIERFQDDPSAVFEEYGLTPAERAALREG 47 (81)
T ss_pred HHHHHHHHHCHHHHHHHcCCCHHHHHHHHcc
Confidence 3333333444468999999999999988755
No 86
>PLN03196 MOC1-like protein; Provisional
Probab=31.51 E-value=55 Score=36.25 Aligned_cols=33 Identities=39% Similarity=0.601 Sum_probs=22.1
Q ss_pred CCCCCCchHH----HHHHHHhcCCCHHHHHHHHhhCC
Q 009434 70 PKVRGSPVIY----RRSFLEKKGLTKEEIDEAFRRVP 102 (535)
Q Consensus 70 P~V~~SPl~k----Ki~FLesKGLT~eEId~Al~ra~ 102 (535)
|.|-.+.+++ +++||++.|++..+|-.++.+.+
T Consensus 113 P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P 149 (487)
T PLN03196 113 PLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYP 149 (487)
T ss_pred cHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5555555544 56777777777777777777654
No 87
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=31.48 E-value=3.6e+02 Score=28.73 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009434 216 AEEAAAAAKAAAAAASDVAKASQELLNS 243 (535)
Q Consensus 216 ~eE~aea~ka~aaa~sevakt~qeLl~s 243 (535)
.+|.....++.......+...+.++...
T Consensus 205 ~dE~g~l~~~~~~m~~~l~~~~~~~~~~ 232 (565)
T PRK10935 205 PNELGLLAKAFNQMSSELHKLYRSLEAS 232 (565)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555555555554433
No 88
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=30.88 E-value=45 Score=26.35 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009434 251 FSELMNLLDVQLQEMKSMSNSI 272 (535)
Q Consensus 251 L~~ltk~ld~q~~ElKSl~~si 272 (535)
|.++-..+..|++|+.-|.+.|
T Consensus 17 l~elk~~l~~Q~kE~~~LRntI 38 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRNTI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555554444
No 89
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=30.69 E-value=33 Score=28.29 Aligned_cols=28 Identities=46% Similarity=0.744 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHh
Q 009434 58 EQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 99 (535)
Q Consensus 58 dlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ 99 (535)
++++.|++|+.+- +.|-||.++|+.||+
T Consensus 38 ~i~~~A~k~~~ha--------------kRktlt~~DI~~Alk 65 (65)
T smart00803 38 EIVQEALKFMRHS--------------KRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHh--------------CCCeecHHHHHHHhC
Confidence 5888999999886 458899999999985
No 90
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=30.45 E-value=3.9e+02 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHHHHHHhhcccccccchhhccccc
Q 009434 168 VGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEE 202 (535)
Q Consensus 168 AtV~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~D 202 (535)
+.+++-++||++..+.-|+.=+..||+....++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 46 (310)
T PRK10559 12 AITLVLVILAFIAIFRAWVFYTESPWTRDARFSAD 46 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEeE
Confidence 45566677777777777776688888888777765
No 91
>PRK12705 hypothetical protein; Provisional
Probab=30.23 E-value=3.1e+02 Score=31.09 Aligned_cols=11 Identities=9% Similarity=0.313 Sum_probs=6.5
Q ss_pred HHHHHHhhccc
Q 009434 179 AVFFKKSLIPR 189 (535)
Q Consensus 179 Y~L~KrYIlP~ 189 (535)
++|+|+|++=.
T Consensus 23 ~~~~~~~~~~~ 33 (508)
T PRK12705 23 VLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHH
Confidence 55667765543
No 92
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=29.68 E-value=3.7e+02 Score=23.20 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHH
Q 009434 217 EEAAAAAKAAAAAASDVAKASQELLNS--KNEERRYFSELMNLLDVQLQEM 265 (535)
Q Consensus 217 eE~aea~ka~aaa~sevakt~qeLl~s--k~eekk~L~~ltk~ld~q~~El 265 (535)
++..+..+...+....+.+.+.++... ..+++..|.++...++.-.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 125 (181)
T PF12729_consen 75 EERQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLR 125 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666555555432 3455655655555544443333
No 93
>PRK11677 hypothetical protein; Provisional
Probab=29.13 E-value=2.8e+02 Score=26.32 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009434 250 YFSELMNLLDVQLQEMKSM 268 (535)
Q Consensus 250 ~L~~ltk~ld~q~~ElKSl 268 (535)
-|.++..+|+.+.+.-+.|
T Consensus 55 HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 55 HFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666
No 94
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=28.64 E-value=4.3e+02 Score=29.92 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009434 251 FSELMNLLDVQLQEMKSMSN 270 (535)
Q Consensus 251 L~~ltk~ld~q~~ElKSl~~ 270 (535)
+..+.++.+....+|+.|.+
T Consensus 101 ~~~l~~~~~~L~~~F~~LA~ 120 (475)
T PRK10361 101 IRQMINSEQRLSEQFENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666655
No 95
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=28.27 E-value=1.3e+02 Score=28.00 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=2.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccccccchh
Q 009434 165 VLAVGLLAASGAGTAVFFKKSLIPRLKSWIRK 196 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs 196 (535)
|+++..+.|+ +.++.+|+-|.+..|--.
T Consensus 17 ~~v~~~f~~f----~~~~~k~~g~~i~~~ld~ 44 (163)
T PF05405_consen 17 TLVALCFIIF----IIFIYKKFGPSIAEWLDE 44 (163)
T ss_dssp ---------------------------CHHHH
T ss_pred HHHHHHHHHH----HHHHHHHhhHHHHHHHHH
Confidence 4444444444 556666777777765444
No 96
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.49 E-value=6.4e+02 Score=25.31 Aligned_cols=25 Identities=16% Similarity=-0.052 Sum_probs=12.4
Q ss_pred HHHHHHhHHHHHHHHHhhcccccccchh
Q 009434 169 GLLAASGAGTAVFFKKSLIPRLKSWIRK 196 (535)
Q Consensus 169 tV~gGvgYGlY~L~KrYIlP~Lkpptrs 196 (535)
.++..++.+++..-.+| .++.+.+.
T Consensus 17 ~~~~~~~l~l~~~~~~~---~~~~~~~~ 41 (276)
T PRK13922 17 ILLLLLALALLLADRRL---GSLSPVRQ 41 (276)
T ss_pred HHHHHHHHHHHhhhccc---ccchHHHH
Confidence 34444455555555555 34444444
No 97
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=27.11 E-value=59 Score=26.59 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=18.0
Q ss_pred CccchhHHHHHHHHHHHHHhH
Q 009434 156 MSRFHWYHAVLAVGLLAASGA 176 (535)
Q Consensus 156 ~prrDWRD~FIMAtV~gGvgY 176 (535)
.+.++||=+|+...+++|+.|
T Consensus 41 ~~~~~W~~~fl~Gl~~g~~l~ 61 (62)
T PF14241_consen 41 KPDRDWRLAFLAGLILGGFLA 61 (62)
T ss_pred CCCccHHHHHHHHHHHHHHHh
Confidence 356899999999999999865
No 98
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=27.00 E-value=2.7e+02 Score=22.10 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009434 250 YFSELMNLLDVQLQEMKSMSNSIRKLEGPS 279 (535)
Q Consensus 250 ~L~~ltk~ld~q~~ElKSl~~si~~L~~~i 279 (535)
.|..|+++|..++++||....+++.|+++|
T Consensus 9 ql~~l~~~l~elk~~l~~Q~kE~~~LRntI 38 (45)
T PF11598_consen 9 QLSELNQMLQELKELLRQQIKETRFLRNTI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888888665
No 99
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=26.56 E-value=64 Score=35.72 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHhHHHHHH
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVF 181 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L 181 (535)
+.+|.+|+..++++|+|||...+
T Consensus 2 ~~~~k~l~~~~l~~~~~ygG~v~ 24 (582)
T PF09731_consen 2 SSFRKFLLYTTLLGGVGYGGGVY 24 (582)
T ss_pred CchhhHHHHHHHHHHHHHHHHHH
Confidence 45677788878888888876554
No 100
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=26.30 E-value=4.3e+02 Score=22.87 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009434 223 AKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSI 272 (535)
Q Consensus 223 ~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si 272 (535)
....+..+.-+.+++++|++.++.-...|..+-.-+..=.+-++.|+.-|
T Consensus 17 l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DL 66 (88)
T PF10241_consen 17 LALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDL 66 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777788999998888777777666555544445555554444
No 101
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=26.01 E-value=5.6e+02 Score=24.10 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009434 224 KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDV 260 (535)
Q Consensus 224 ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~ 260 (535)
++++...++|+.-+..++..-.+-+|.++.++..|.+
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k 88 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK 88 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455444444444333444445555544443
No 102
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=25.91 E-value=3.1e+02 Score=27.96 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009434 214 SLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNL 257 (535)
Q Consensus 214 ~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ 257 (535)
.+.+|+.++..+-+.+..++..-|+.|+..-.+--.+|.+|+++
T Consensus 162 ~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~a 205 (244)
T cd07595 162 ALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEA 205 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 46788888888888888888888999886645555555555533
No 103
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=25.84 E-value=2.7e+02 Score=27.94 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHH
Q 009434 213 PSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRY-FSELMNLLDVQLQEM 265 (535)
Q Consensus 213 ~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~-L~~ltk~ld~q~~El 265 (535)
..+-.|+.|.+....+...|| +.|..++ .|+=+|.+ |+++|+...+.-+|=
T Consensus 50 ~eLkNeLREVREELkEKmeEI-KQIKdiM-DKDFDKL~EFVEIMKeMQkDMDEK 101 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEI-KQIKDIM-DKDFDKLHEFVEIMKEMQKDMDEK 101 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhhHHHHHHHHHHHHHHHHhHHHh
Confidence 336677888888888888888 8888888 55655544 788888877666653
No 104
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=25.50 E-value=1.1e+02 Score=31.20 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCcc
Q 009434 219 AAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSL 287 (535)
Q Consensus 219 ~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f~~~~~ 287 (535)
+.+.....+.-+.-++....+|+..-+. +..++++|..+.++|..|..++..+-+..+.|...++
T Consensus 54 l~~~l~~l~~v~~~~a~aapdL~~~l~~----~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~~n~ 118 (267)
T PF11887_consen 54 LREDLRNLADVADTYADAAPDLLDALDN----LTTTSRTLVDQRQQLDALLLSATGLADTGTDFLADNR 118 (267)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333333334444444444433222 6788899999999999999999999888877766554
No 105
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=25.28 E-value=63 Score=32.66 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=25.0
Q ss_pred CchHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009434 75 SPVIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (535)
Q Consensus 75 SPl~kKi~FLesKGLT~eEId~Al~ra~~ 103 (535)
.-+..+++||++-|++.++|-.+|.+.+.
T Consensus 173 ~~~~~~v~~L~~~G~~~~~i~~~l~~~P~ 201 (345)
T PF02536_consen 173 SELKPKVEFLRSLGFSKEDIGKLLRKCPR 201 (345)
T ss_dssp CCCHHHHHHHHHCTT-GHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcccchhhhHHhhcccc
Confidence 34899999999999999999999999753
No 106
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=25.14 E-value=1e+02 Score=28.98 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=27.9
Q ss_pred CccchhHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 009434 156 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLI 187 (535)
Q Consensus 156 ~prrDWRD~FIMAtV~gGvgYGlY~L~KrYIl 187 (535)
..+-+|.+.++.+.++|-++||.|-|+--.++
T Consensus 68 l~~~s~~~a~~~GallGl~~YgtYdlTN~Atl 99 (128)
T PF09945_consen 68 LAAGSWLRALLYGALLGLFAYGTYDLTNLATL 99 (128)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44569999999999999999999999987764
No 107
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=25.00 E-value=5.3e+02 Score=28.18 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009434 220 AAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSN 270 (535)
Q Consensus 220 aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~ 270 (535)
.+.++.++.|+=++.-...--+.+--.+|.-+.+++++||--+++.|-|+.
T Consensus 283 ~~~l~~iE~AVid~E~~~~n~~T~llrdk~s~~~f~k~LD~EEekaRkls~ 333 (358)
T PF08405_consen 283 PATLRNIEDAVIDMEALSNNHLTALLRDKNSGAAFMKTLDMEEEKARKLST 333 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHhhhHHHHHHHHhh
Confidence 455566666665543221111222233444578889999988888887754
No 108
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=25.00 E-value=66 Score=32.52 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=22.8
Q ss_pred chHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009434 76 PVIYRRSFLEKKGLTKEEIDEAFRRVP 102 (535)
Q Consensus 76 Pl~kKi~FLesKGLT~eEId~Al~ra~ 102 (535)
.+..|++||++-|++++||-..+.+.+
T Consensus 242 ~l~~~i~~L~~lG~s~~ei~~mv~~~P 268 (345)
T PF02536_consen 242 KLKPKIEFLQSLGFSEEEIAKMVRRFP 268 (345)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHSG
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHhCc
Confidence 488999999999999999999999864
No 109
>PHA00426 type II holin
Probab=24.48 E-value=1.1e+02 Score=26.15 Aligned_cols=28 Identities=4% Similarity=-0.120 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSL 186 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYI 186 (535)
-+|.+||..|++.-.|.--...++++++
T Consensus 32 lsl~~WfyvAai~YTVvQig~~v~~ki~ 59 (67)
T PHA00426 32 LSLNEWFYVAAIAYTVVQIGAKVVDTII 59 (67)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998876665444455556554
No 110
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=24.15 E-value=5.8e+02 Score=23.92 Aligned_cols=18 Identities=6% Similarity=0.112 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009434 251 FSELMNLLDVQLQEMKSM 268 (535)
Q Consensus 251 L~~ltk~ld~q~~ElKSl 268 (535)
+..+.+.++.+...++.+
T Consensus 76 ~~~~~~~i~~i~~~~~~i 93 (262)
T smart00283 76 VEEAVSAVEELEESSDEI 93 (262)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444333333
No 111
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.68 E-value=2.9e+02 Score=27.58 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=20.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 237 SQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 237 ~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
++.|....+--+.|...+.+.++++.++|.+|...|..+.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334455555666666666666666555444
No 112
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=23.57 E-value=62 Score=20.61 Aligned_cols=23 Identities=22% Similarity=0.493 Sum_probs=16.0
Q ss_pred CCCCCCCCc---hHHHHHHHHhcCCC
Q 009434 68 SHPKVRGSP---VIYRRSFLEKKGLT 90 (535)
Q Consensus 68 ~dP~V~~SP---l~kKi~FLesKGLT 90 (535)
..|.|-..+ +..|+.||++.|++
T Consensus 6 ~~P~il~~~~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 6 KFPQILGYSEKKLKPKVEFLKELGFS 31 (31)
T ss_pred hCcCcccccHHHhhHHHHHHHHcCCC
Confidence 345554444 67799999999874
No 113
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.39 E-value=1.8e+02 Score=32.85 Aligned_cols=54 Identities=9% Similarity=0.109 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 216 AEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 216 ~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
.+|+.+..+....++.++.+.+++|... +.++-+-|+.++.|++.|+..|..+.
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq-------~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQ-------RGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555566666664333333322 33455667777888888888874433
No 114
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.24 E-value=2.7e+02 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 252 SELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 252 ~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
..+.+.++...++|+.++..|..|+
T Consensus 80 ~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 80 KRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555443
No 115
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=23.11 E-value=28 Score=29.32 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHHhHHHH
Q 009434 156 MSRFHWYHAVLAVGLLAASGAGTA 179 (535)
Q Consensus 156 ~prrDWRD~FIMAtV~gGvgYGlY 179 (535)
+...||-..+-.++++||+||-+|
T Consensus 31 Ls~kdWl~Lvp~~~~va~igYlay 54 (64)
T PF10660_consen 31 LSVKDWLALVPFAAAVAGIGYLAY 54 (64)
T ss_dssp ------------------------
T ss_pred ccHHHHHHHHhHHHHHHHHHHHhh
Confidence 455677777777788888887655
No 116
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.05 E-value=4.9e+02 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 233 VAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 233 vakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
+.+-+......+++..+.-.++++.|++..+++++|...+.+++
T Consensus 100 l~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 100 LGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555566666667888999998889999999888877
No 117
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=23.02 E-value=3.3e+02 Score=22.52 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009434 232 DVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSM 268 (535)
Q Consensus 232 evakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl 268 (535)
+.-..+.+++.+..-+...+..+.+.+.....+|...
T Consensus 70 ~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~ 106 (125)
T PF13801_consen 70 AARQELRALLAAPPPDEAAIEALLEEIREAQAELRQE 106 (125)
T ss_dssp HHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555444434444555555555545444433
No 118
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=22.99 E-value=1.2e+02 Score=27.31 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=30.4
Q ss_pred CccchhHHH---HHHHHHHHHHhHHHHHHHHHhhcccccccchh
Q 009434 156 MSRFHWYHA---VLAVGLLAASGAGTAVFFKKSLIPRLKSWIRK 196 (535)
Q Consensus 156 ~prrDWRD~---FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs 196 (535)
.+...|... +|..-|..|+.|-+|.++=|=++=.||.-..+
T Consensus 29 ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlIlv~KAkrqr 72 (91)
T PF01708_consen 29 SSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLILVLKAKRQR 72 (91)
T ss_pred CCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHhheeeeccCC
Confidence 456788876 55555667888999999988888777775444
No 119
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=22.94 E-value=1e+03 Score=27.43 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 009434 257 LLDVQLQEMKSMSNSI 272 (535)
Q Consensus 257 ~ld~q~~ElKSl~~si 272 (535)
.+..+.+|||.=.+.|
T Consensus 447 ~l~~isHelrtPL~~i 462 (914)
T PRK11466 447 FLAAMSHEIRTPLYGI 462 (914)
T ss_pred HHHHhHHHHhhHHHHH
Confidence 3445566666554444
No 120
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=22.90 E-value=90 Score=23.16 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHh
Q 009434 57 EEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 99 (535)
Q Consensus 57 edlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ 99 (535)
.+||.-++.....= .-=+..=...+...|+|++||.++++
T Consensus 8 reli~l~~s~~~~C---~yc~~~H~~~a~~~G~~~~ei~~v~~ 47 (50)
T TIGR00778 8 KELIAIAVSQINGC---GYCLDAHTKLARKAGVTAEELAEALA 47 (50)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46677777666541 11133345567889999999999875
No 121
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.87 E-value=2.4e+02 Score=26.43 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred HhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009434 184 KSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQ 263 (535)
Q Consensus 184 rYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ 263 (535)
=|.+=+++.|+=+ | -..-.+-. +.++.+.-.+.|.+....|-.+|.+-...|..+-..||.+..
T Consensus 19 GY~Y~wwKGws~s-------D--~M~vTrr~-------m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~e 82 (126)
T PF07889_consen 19 GYGYMWWKGWSFS-------D--LMFVTRRS-------MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKE 82 (126)
T ss_pred HheeeeecCCchh-------H--HHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6777778888776 2 01111211 112333333333333333444444433346677777777777
Q ss_pred HHHHHHHHHhhhcCCCCccC
Q 009434 264 EMKSMSNSIRKLEGPSNNSG 283 (535)
Q Consensus 264 ElKSl~~si~~L~~~id~f~ 283 (535)
--+.+...+..++.-+..|.
T Consensus 83 i~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 77777777777776654443
No 122
>PLN03196 MOC1-like protein; Provisional
Probab=22.77 E-value=1.1e+02 Score=34.02 Aligned_cols=34 Identities=18% Similarity=0.473 Sum_probs=27.7
Q ss_pred CCCCCC---CchHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009434 69 HPKVRG---SPVIYRRSFLEKKGLTKEEIDEAFRRVP 102 (535)
Q Consensus 69 dP~V~~---SPl~kKi~FLesKGLT~eEId~Al~ra~ 102 (535)
.|.|-. ..+.+|+.||++-|++.+||-.++.+.+
T Consensus 329 ~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P 365 (487)
T PLN03196 329 LPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCP 365 (487)
T ss_pred cchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 444443 3467899999999999999999999975
No 123
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=22.63 E-value=4.8e+02 Score=28.88 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 009434 215 LAEEAAAAAKAAAAAASDVAKASQELLNSKNE 246 (535)
Q Consensus 215 i~eE~aea~ka~aaa~sevakt~qeLl~sk~e 246 (535)
.++|..+++...+.++.+|...+.+....-++
T Consensus 399 VA~EVR~LA~~s~~at~~I~~~i~~~~~~v~~ 430 (554)
T PRK15041 399 VAGEVRNLAQRSAQAAREIKSLIEDSVGKVDV 430 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777665544333
No 124
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=22.26 E-value=4.9e+02 Score=24.77 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhcc-------cccccchh
Q 009434 160 HWYHAVLAVGLLAASGAGTAVFFKKSLIP-------RLKSWIRK 196 (535)
Q Consensus 160 DWRD~FIMAtV~gGvgYGlY~L~KrYIlP-------~Lkpptrs 196 (535)
.|+-|.=|.++.||+..|.|.|+ +|+.| .|-|..+.
T Consensus 4 ~w~~W~K~~~~G~~ii~~G~~l~-~y~tPTeEeL~~r~sPELrk 46 (128)
T PF07960_consen 4 NWRRWAKMLVAGAVIIGGGPALV-KYTTPTEEELFKRYSPELRK 46 (128)
T ss_pred hHHHHHHHHHhcceeEeechHHh-eecCCCHHHHHHhcCHHHHH
Confidence 45555444444444443334333 35544 34555555
No 125
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.19 E-value=7.1e+02 Score=23.93 Aligned_cols=13 Identities=23% Similarity=0.128 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhHH
Q 009434 165 VLAVGLLAASGAG 177 (535)
Q Consensus 165 FIMAtV~gGvgYG 177 (535)
|+.+.++|+++|+
T Consensus 33 ~~l~~l~~~~~~~ 45 (199)
T PF10112_consen 33 FLLSLLIGAVAFA 45 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 126
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.02 E-value=2.4e+02 Score=29.87 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccC
Q 009434 217 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSG 283 (535)
Q Consensus 217 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f~ 283 (535)
+|+..++.+.+....++..-.++ +....+++..|..-++....+..|+.+.+.+..+.......|+
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~-l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKK-LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555555555555555333333 3344444444444445555555555555544444443443343
No 127
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.86 E-value=2.8e+02 Score=25.31 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhc
Q 009434 219 AAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELM------NLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 219 ~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt------k~ld~q~~ElKSl~~si~~L~ 276 (535)
.....++......+|++-|+++...+-++. |..++ ..++.++.-+.+|..++.+|+
T Consensus 31 ~~~~l~kL~~~i~eld~~i~~~v~~~~~~L--L~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~ 92 (132)
T PF10392_consen 31 ISTPLKKLNFDIQELDKRIRSQVTSNHEDL--LSQASSIEELESVLQAVRSSVESLQSSYERLR 92 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888889999999888877764 33332 223333344444444555554
No 128
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=21.68 E-value=1.2e+02 Score=26.76 Aligned_cols=25 Identities=4% Similarity=-0.061 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhc
Q 009434 163 HAVLAVGLLAASGAGTAVFFKKSLI 187 (535)
Q Consensus 163 D~FIMAtV~gGvgYGlY~L~KrYIl 187 (535)
..|+.+.+.++++|++|.|+.+-..
T Consensus 6 ~~l~Ga~~ag~la~~ly~lt~~i~~ 30 (82)
T PF11282_consen 6 RCLSGALIAGGLAYGLYFLTTSIAA 30 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888899999999986544
No 129
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=21.67 E-value=36 Score=31.17 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhh
Q 009434 77 VIYRRSFLEKKGLTKEEIDEAFRR 100 (535)
Q Consensus 77 l~kKi~FLesKGLT~eEId~Al~r 100 (535)
++.-.++|++-|||+||++..+.|
T Consensus 33 ~aD~eAy~~~~gLTeEe~~AV~~r 56 (106)
T cd07921 33 KADEEAYCDKFGLTEEQKQAVLDR 56 (106)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHhC
Confidence 333468999999999999998866
No 130
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.66 E-value=1.2e+02 Score=27.98 Aligned_cols=28 Identities=11% Similarity=-0.286 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 009434 160 HWYHAVLAVGLLAASGAGTAVFFKKSLI 187 (535)
Q Consensus 160 DWRD~FIMAtV~gGvgYGlY~L~KrYIl 187 (535)
.|.=|++.+.+++++++++|.+.|+|--
T Consensus 20 a~GWwll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 20 APGWWLLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555788888889999999999998865
No 131
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.35 E-value=5.5e+02 Score=28.04 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009434 215 LAEEAAAAAKAAAAAASDVAKASQELLN 242 (535)
Q Consensus 215 i~eE~aea~ka~aaa~sevakt~qeLl~ 242 (535)
.++|..+++.....++.+|...+.+...
T Consensus 397 VA~EVr~LA~~t~~st~~I~~~i~~~~~ 424 (553)
T PRK15048 397 VAGEVRNLASRSAQAAKEIKALIEDSVS 424 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777766665443
No 132
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=21.35 E-value=42 Score=29.71 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHH
Q 009434 169 GLLAASGAGTAVFFK 183 (535)
Q Consensus 169 tV~gGvgYGlY~L~K 183 (535)
..+||+|||++.|+.
T Consensus 14 lG~GGvG~~L~~Lvt 28 (84)
T PF15141_consen 14 LGFGGVGYALFVLVT 28 (84)
T ss_pred HHccchhheeeeEeC
Confidence 334577888877653
No 133
>PHA02902 putative IMV membrane protein; Provisional
Probab=21.21 E-value=1.2e+02 Score=26.09 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHh-hccc
Q 009434 165 VLAVGLLAASGAGTAVFFKKS-LIPR 189 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~KrY-IlP~ 189 (535)
.|.|+.+.=|+|-+|.++||| -+|.
T Consensus 7 vi~~v~v~Ivclliya~YrR~kci~s 32 (70)
T PHA02902 7 VILAVIVIIFCLLIYAAYKRYKCIPS 32 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 455666777799999999999 4443
No 134
>PRK11637 AmiB activator; Provisional
Probab=21.17 E-value=3.5e+02 Score=29.04 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009434 232 DVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPS 279 (535)
Q Consensus 232 evakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~i 279 (535)
++...-.+|...+.+-.+.+..|-+.+.....+++.|......|+..|
T Consensus 202 e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I 249 (428)
T PRK11637 202 EQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSI 249 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333444444444444444544444444444333
No 135
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=20.86 E-value=4.7e+02 Score=26.57 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCccCC
Q 009434 215 LAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEG-PSNNSGR 284 (535)
Q Consensus 215 i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~-~id~f~~ 284 (535)
..+++|+.+ +|...++.+-.+ .++.+..++++-..|..-...|-..+..++-|..-|.+|-+ ..++|..
T Consensus 108 YWk~lAE~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~~e~ 178 (200)
T PF07412_consen 108 YWKELAEERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDNLES 178 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccC
Confidence 557888877 888999988855 55566678888777776666666667777777777777775 3444433
No 136
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.83 E-value=4.7e+02 Score=27.33 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhcCCCCCCCCchHHHHHHH-----HhcCCCHHHHHHHH
Q 009434 55 MREEQVQNAVKFLSHPKVRGSPVIYRRSFL-----EKKGLTKEEIDEAF 98 (535)
Q Consensus 55 ~Redlv~sAV~FL~dP~V~~SPl~kKi~FL-----esKGLT~eEId~Al 98 (535)
.++=|-..-|+||.|..+-.+ ..+|+.|. ....++-+++-.|+
T Consensus 16 L~~FL~~~~I~F~dDl~~~~~-~~kr~~~~~~~~~~~~~~sl~~~~~A~ 63 (325)
T PF08317_consen 16 LQDFLNMTGIRFYDDLEMELT-TTKRRSTTAPDSSDEEPPSLEDYVVAG 63 (325)
T ss_pred HHHHHHHhCceeCCCcccccc-ccCCcccCCCCcCCCCCCCHHHHHHHh
Confidence 343444445888777654332 22344443 34444555544444
No 137
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.79 E-value=4.7e+02 Score=28.33 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=14.5
Q ss_pred cchhHHHH-HHHHHHHHHhHHHHHHHHHhhc
Q 009434 158 RFHWYHAV-LAVGLLAASGAGTAVFFKKSLI 187 (535)
Q Consensus 158 rrDWRD~F-IMAtV~gGvgYGlY~L~KrYIl 187 (535)
.+|||--+ -|-....++. ..+.-+|.||-
T Consensus 215 ~kDWR~hleqm~~~~~~I~-~~~~~~~~~L~ 244 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSIE-SALPETKSQLD 244 (359)
T ss_pred cchHHHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence 48999554 4444444442 33344555543
No 138
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=20.72 E-value=1.1e+02 Score=26.59 Aligned_cols=27 Identities=19% Similarity=-0.026 Sum_probs=20.8
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009434 157 SRFHWYHAVLAVGLLAASGAGTAVFFK 183 (535)
Q Consensus 157 prrDWRD~FIMAtV~gGvgYGlY~L~K 183 (535)
.-++|.||.+.++++++....+|...|
T Consensus 18 ~~~R~sDy~~~a~~ta~~p~~~~~~~~ 44 (86)
T PF10785_consen 18 RYFRPSDYAIWAGATAASPPLGYYMER 44 (86)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346899999999998888776665544
No 139
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=1.1e+02 Score=28.94 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=24.7
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009434 157 SRFHWYHAVLAVGLLAASGAGTAVFFKK 184 (535)
Q Consensus 157 prrDWRD~FIMAtV~gGvgYGlY~L~Kr 184 (535)
..|..-+|+-.++++||+|.++|-+.+|
T Consensus 31 nERTfl~wl~~~vllg~l~~~l~n~~~~ 58 (126)
T COG5264 31 NERTFLSWLSVTVLLGGLGFALYNSGDR 58 (126)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5688889999999999999999999884
No 140
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.62 E-value=2.9e+02 Score=32.46 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=8.2
Q ss_pred HHHHhcCCCHHHHHHHH
Q 009434 82 SFLEKKGLTKEEIDEAF 98 (535)
Q Consensus 82 ~FLesKGLT~eEId~Al 98 (535)
+||++..=..+.+...+
T Consensus 402 ~fl~~~~~~~dsl~~l~ 418 (717)
T PF10168_consen 402 EFLESDEEDKDSLQELA 418 (717)
T ss_pred HHhcccCCccchhhhhc
Confidence 35555444444444443
No 141
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=20.57 E-value=4.5e+02 Score=27.72 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhcCCC
Q 009434 217 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELM------NLLDVQLQEMKSMSNSIRKLEGPS 279 (535)
Q Consensus 217 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt------k~ld~q~~ElKSl~~si~~L~~~i 279 (535)
......++.+..++.++.+.++.+.+. ++... ..+..+.+||+.|..+|.++-++.
T Consensus 67 ~~g~s~lqtae~aL~~~~~~lqrirel-------avqaan~t~s~~dr~~iq~Ei~~l~~el~~iantt 128 (360)
T COG1344 67 QDGISKLQTAEGALSEISKILQRIKEL-------AVQAANGTLSDADRAAIQKEIEQLLDELDNIANTT 128 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455566777777777666665533 33333 567888999999999999888766
No 142
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=20.51 E-value=1.2e+02 Score=28.22 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=24.5
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009434 157 SRFHWYHAVLAVGLLAASGAGTAVFFKK 184 (535)
Q Consensus 157 prrDWRD~FIMAtV~gGvgYGlY~L~Kr 184 (535)
..|..-+|+-.++++||+|.++|-+.+|
T Consensus 16 NERTFl~WL~~tvlLg~l~~~l~n~~~~ 43 (112)
T KOG4580|consen 16 NERTFLSWLSVTVLLGGLGFALYNSGDR 43 (112)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4688888999999999999999998884
No 143
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.38 E-value=1.4e+02 Score=34.49 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCC
Q 009434 214 SLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGR 284 (535)
Q Consensus 214 ~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f~~ 284 (535)
+|.+|+....|++.+.+..-+.+..+|-.+++ ..-+|+.+..||-..--|.+||++|.+...
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n---------~sqkeK~e~DLKkEIKKLQRlRdQIKtW~s 66 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSANN---------VSQKEKLESDLKKEIKKLQRLRDQIKTWQS 66 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57888999999999999988888888887743 234555666666666666777777766544
No 144
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.22 E-value=3.2e+02 Score=30.83 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=61.4
Q ss_pred HHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009434 181 FFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDV 260 (535)
Q Consensus 181 L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~ 260 (535)
.-+.|.++++.....=-.+++.-. .....++.--.+++.+..+.+......+-.++..=..++..-.+.+..+...|+.
T Consensus 239 ~~~gy~l~~~~i~~~i~~i~~~l~-~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 239 EEEGYYLEHLDIEEEIEQIEEQLE-EALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEH 317 (560)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445677777555333222221111 0122233333556666666677777777677776677777777778888899999
Q ss_pred HHHHHHHHHHHHhhhcC
Q 009434 261 QLQEMKSMSNSIRKLEG 277 (535)
Q Consensus 261 q~~ElKSl~~si~~L~~ 277 (535)
..+..+-|..++.+++.
T Consensus 318 ~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 318 AKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988883
Done!