Query 009434
Match_columns 535
No_of_seqs 171 out of 255
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 05:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ff5_A PEX14P, peroxisomal bio 99.8 5.1E-20 1.7E-24 144.2 5.4 50 52-101 5-54 (54)
2 2w84_A Peroxisomal membrane pr 99.8 1.1E-19 3.8E-24 148.7 5.9 53 53-105 11-63 (70)
3 3qh9_A Liprin-beta-2; coiled-c 54.6 77 0.0026 26.8 8.8 54 215-272 24-77 (81)
4 1v54_J Cytochrome C oxidase po 51.4 12 0.00041 29.6 3.3 28 157-184 25-53 (59)
5 2y69_J Cytochrome C oxidase po 49.9 12 0.00042 31.4 3.3 28 157-184 46-74 (80)
6 3nmd_A CGMP dependent protein 49.5 10 0.00035 31.4 2.8 39 239-277 26-68 (72)
7 3m66_A Mterf3, mterf domain-co 46.1 18 0.0006 34.3 4.3 35 68-102 64-101 (270)
8 1v54_D Cytochrome C oxidase su 43.5 23 0.00079 32.6 4.4 31 159-189 76-106 (147)
9 2y69_D Cytochrome C oxidase su 39.5 28 0.00097 32.7 4.4 31 159-189 98-128 (169)
10 3g67_A Methyl-accepting chemot 38.4 1.7E+02 0.0057 27.9 9.6 29 215-243 117-145 (213)
11 4fp9_B Mterf domain-containing 37.4 20 0.00067 36.3 3.2 35 68-102 69-103 (335)
12 3hnw_A Uncharacterized protein 36.3 2.1E+02 0.0072 25.6 9.5 62 215-276 66-130 (138)
13 3zx6_A HAMP, methyl-accepting 34.1 1.9E+02 0.0064 28.6 9.6 29 215-243 186-214 (341)
14 1yku_A Hypothetical protein PX 29.0 55 0.0019 30.0 4.4 79 173-275 41-119 (136)
15 3p8c_F ABL interactor 2; actin 28.2 2.9E+02 0.0098 25.8 9.1 27 253-279 72-98 (159)
16 1wp7_A Fusion protein; fusion 28.1 67 0.0023 27.6 4.5 32 251-282 15-46 (89)
17 3n27_A Fusion glycoprotein F0, 28.1 1.2E+02 0.004 25.7 5.8 33 251-283 15-47 (80)
18 2fyz_A Fusion protein, fusion 26.9 74 0.0025 25.6 4.3 45 232-283 14-58 (63)
19 1qu7_A Methyl-accepting chemot 26.7 1.6E+02 0.0056 27.7 7.4 28 215-242 106-133 (227)
20 2eqb_B RAB guanine nucleotide 26.3 3.2E+02 0.011 23.7 9.3 52 221-272 12-63 (97)
21 3mva_O Transcription terminati 26.0 48 0.0017 32.7 3.8 26 77-102 86-111 (343)
22 2d9s_A CBL E3 ubiquitin protei 25.3 92 0.0032 24.5 4.4 34 70-103 2-35 (53)
23 2cly_A ATP synthase B chain, m 24.2 92 0.0031 30.1 5.2 28 165-196 57-84 (214)
24 1svf_A Protein (fusion glycopr 23.4 77 0.0027 25.6 3.8 42 233-281 12-53 (64)
25 1ify_A HHR23A, UV excision rep 23.0 74 0.0025 23.6 3.4 31 73-103 4-34 (49)
26 3trt_A Vimentin; cytoskeleton, 22.5 2.8E+02 0.0096 21.7 8.2 18 251-268 58-75 (77)
27 2wvr_A Geminin; DNA replicatio 22.3 4E+02 0.014 25.9 9.1 71 213-284 96-168 (209)
28 3r1f_A ESX-1 secretion-associa 21.1 88 0.003 27.3 4.1 29 74-102 5-40 (135)
No 1
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=99.79 E-value=5.1e-20 Score=144.22 Aligned_cols=50 Identities=54% Similarity=0.800 Sum_probs=47.9
Q ss_pred CchhhHHHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhhC
Q 009434 52 SEPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 101 (535)
Q Consensus 52 ~~~~Redlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ra 101 (535)
..++|++||++||+||+||+|+++|+++||+||++||||++||++||+|+
T Consensus 5 ~~~~Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 5 SPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45789999999999999999999999999999999999999999999985
No 2
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=99.78 E-value=1.1e-19 Score=148.74 Aligned_cols=53 Identities=49% Similarity=0.695 Sum_probs=49.7
Q ss_pred chhhHHHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhhCCCCC
Q 009434 53 EPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPP 105 (535)
Q Consensus 53 ~~~Redlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ra~~~~ 105 (535)
..+||+||++||+||+||+|+++|+++||+||++||||++||++||+|++...
T Consensus 11 ~~~Re~li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 11 VLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp SCCCHHHHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred CCchHHHHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 45899999999999999999999999999999999999999999999987543
No 3
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=54.56 E-value=77 Score=26.80 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009434 215 LAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSI 272 (535)
Q Consensus 215 i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si 272 (535)
+.+|+..++-.+.+.-++=...=.+|.++|+| |..|-+.|..-..||+.|...|
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~E----l~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAE----VAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999998888889999999887 8899999999999999998876
No 4
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=51.37 E-value=12 Score=29.64 Aligned_cols=28 Identities=7% Similarity=-0.296 Sum_probs=21.5
Q ss_pred ccchhHHH-HHHHHHHHHHhHHHHHHHHH
Q 009434 157 SRFHWYHA-VLAVGLLAASGAGTAVFFKK 184 (535)
Q Consensus 157 prrDWRD~-FIMAtV~gGvgYGlY~L~Kr 184 (535)
++-|+-=| +.|+..++|++|++|.|++-
T Consensus 25 g~sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 25 GATDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566544 77888888999999999864
No 5
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=49.89 E-value=12 Score=31.35 Aligned_cols=28 Identities=7% Similarity=-0.296 Sum_probs=21.9
Q ss_pred ccchhHHH-HHHHHHHHHHhHHHHHHHHH
Q 009434 157 SRFHWYHA-VLAVGLLAASGAGTAVFFKK 184 (535)
Q Consensus 157 prrDWRD~-FIMAtV~gGvgYGlY~L~Kr 184 (535)
++-||-=| +.|+..++|++|++|.|++-
T Consensus 46 grsd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 46 GATDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555 77888888999999999864
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.49 E-value=10 Score=31.38 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=19.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcC
Q 009434 239 ELLNSKNEERRYFSELMNLLDVQ----LQEMKSMSNSIRKLEG 277 (535)
Q Consensus 239 eLl~sk~eekk~L~~ltk~ld~q----~~ElKSl~~si~~L~~ 277 (535)
+++..|+++.+..+.+++.|++. ..+++.|...|..++.
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445555555555555444443 4444455555555543
No 7
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=46.14 E-value=18 Score=34.33 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=28.0
Q ss_pred CCCCCCCCchH---HHHHHHHhcCCCHHHHHHHHhhCC
Q 009434 68 SHPKVRGSPVI---YRRSFLEKKGLTKEEIDEAFRRVP 102 (535)
Q Consensus 68 ~dP~V~~SPl~---kKi~FLesKGLT~eEId~Al~ra~ 102 (535)
.+|.+-...++ .+++||++.|++.++|-.+|.+.+
T Consensus 64 ~~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P 101 (270)
T 3m66_A 64 KNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAP 101 (270)
T ss_dssp HCTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred hCChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 45666666655 799999999999999999998754
No 8
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=43.51 E-value=23 Score=32.61 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=27.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 189 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~ 189 (535)
-.|+-+|..+.++.|++.++|.+.|.|+.|-
T Consensus 76 gewK~v~g~v~~~i~~s~~~f~~~r~~v~~p 106 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 106 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4899999888888899999999999998753
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=39.49 E-value=28 Score=32.74 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=27.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 189 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~ 189 (535)
-.|+-+|..+.++.|++.++|.+.|.|++|-
T Consensus 98 gEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p 128 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 128 (169)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5899998888888899999999999999754
No 10
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=38.43 E-value=1.7e+02 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009434 215 LAEEAAAAAKAAAAAASDVAKASQELLNS 243 (535)
Q Consensus 215 i~eE~aea~ka~aaa~sevakt~qeLl~s 243 (535)
+++|...++.....++.+|.+.+.++...
T Consensus 117 VA~Evr~La~~t~~~~~~I~~~i~~i~~~ 145 (213)
T 3g67_A 117 VANEVQNLSNETNEVTKQIVEKAREILES 145 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666665555543
No 11
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=37.41 E-value=20 Score=36.35 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=32.1
Q ss_pred CCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009434 68 SHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVP 102 (535)
Q Consensus 68 ~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ra~ 102 (535)
.+|.+....+..+|.||.+.||+.++|-.+|++.+
T Consensus 69 ~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P 103 (335)
T 4fp9_B 69 VRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSP 103 (335)
T ss_dssp HCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCG
T ss_pred hCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhCh
Confidence 46999988999999999999999999999999964
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.34 E-value=2.1e+02 Score=25.60 Aligned_cols=62 Identities=19% Similarity=0.133 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009434 215 LAEEAAAAAKAAAAAASD---VAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 276 (535)
Q Consensus 215 i~eE~aea~ka~aaa~se---vakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~ 276 (535)
|++|.-.+......-..+ +.+-+..|.+...+.+-.+..+.+.++....+++.|...+.+|+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554444333333222 23334444444444444477788888888888888888777776
No 13
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=34.10 E-value=1.9e+02 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009434 215 LAEEAAAAAKAAAAAASDVAKASQELLNS 243 (535)
Q Consensus 215 i~eE~aea~ka~aaa~sevakt~qeLl~s 243 (535)
.++|...++.....++.+|...+.++...
T Consensus 186 VAdEVRkLAe~t~~at~~I~~~i~~~~~~ 214 (341)
T 3zx6_A 186 VAGEVRNLAQRSAQAAREIKSLIEDSVGK 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888777766544
No 14
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=28.98 E-value=55 Score=29.97 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=52.5
Q ss_pred HHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009434 173 ASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFS 252 (535)
Q Consensus 173 GvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~ 252 (535)
.=|.++|.|++.|+.+-+ + +| ++..++.++|-.=.+..--|.+|.-.-+..|+.+.
T Consensus 41 ~NG~~m~~lvi~~~~~~~-----s--~~-----------------~ie~la~KiA~ER~eA~~NIgeFVYN~N~GR~~i~ 96 (136)
T 1yku_A 41 KNGEHLLSAFIMYLKEEI-----S--LQ-----------------EIEITSKKIARERIDAKVNIAEFIHNTNVAKIEIM 96 (136)
T ss_dssp HHHHHHHHHHHHHHTTSS-----C--GG-----------------GGHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhccC-----C--HH-----------------HHHHHHHHHHHHHhhccccHHHHHHHcchhHHHHH
Confidence 446678999999887655 1 11 11222222222222222337888877888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 009434 253 ELMNLLDVQLQEMKSMSNSIRKL 275 (535)
Q Consensus 253 ~ltk~ld~q~~ElKSl~~si~~L 275 (535)
+.+..++-..+||+.+...|+.+
T Consensus 97 ~~l~~~~~~~~eL~~~i~kIN~~ 119 (136)
T 1yku_A 97 NILTLLNPDLQQYQALVKKINQF 119 (136)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998888654
No 15
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.25 E-value=2.9e+02 Score=25.78 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009434 253 ELMNLLDVQLQEMKSMSNSIRKLEGPS 279 (535)
Q Consensus 253 ~ltk~ld~q~~ElKSl~~si~~L~~~i 279 (535)
.++++||-|..+|+.|.++|+.|...+
T Consensus 72 ~ll~lLd~Q~~~l~~mes~v~~l~Q~v 98 (159)
T 3p8c_F 72 NVLQMLDIQASQLRRMESSINHISQTV 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999998877443
No 16
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=28.11 E-value=67 Score=27.59 Aligned_cols=32 Identities=3% Similarity=-0.031 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009434 251 FSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 282 (535)
Q Consensus 251 L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f 282 (535)
|..+.++.....+.++.+..+|..+++.||+-
T Consensus 15 I~~TNeAV~EVt~glsqlaVAIqaIQD~IN~~ 46 (89)
T 1wp7_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYGGSG 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66666666677777777777777777666553
No 17
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=28.06 E-value=1.2e+02 Score=25.68 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccC
Q 009434 251 FSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSG 283 (535)
Q Consensus 251 L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f~ 283 (535)
+..+.++.....+-++.+-..|..+|+.||+-+
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~ 47 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSG 47 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 556666666666666777777777776665543
No 18
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=26.88 E-value=74 Score=25.61 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccC
Q 009434 232 DVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSG 283 (535)
Q Consensus 232 evakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~f~ 283 (535)
.-++.|..|..+ |..+.++.....+.++.+...+..+++.||+..
T Consensus 14 qNA~~I~~LK~S-------i~~TNeAV~el~~g~~~lavAv~~iQd~IN~~i 58 (63)
T 2fyz_A 14 TNARAIAAMKNS-------IQATNRAVFEVKEGTQRLAIAVQAIQDHINTIM 58 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566666 778888888888888888889999987766543
No 19
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=26.69 E-value=1.6e+02 Score=27.74 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009434 215 LAEEAAAAAKAAAAAASDVAKASQELLN 242 (535)
Q Consensus 215 i~eE~aea~ka~aaa~sevakt~qeLl~ 242 (535)
.++|...++.....++.+|.+.+.++..
T Consensus 106 VA~EVRkLA~~t~~at~~I~~~i~~~~~ 133 (227)
T 1qu7_A 106 VAGEVRNLAQRSAQAAREIKSLIEDSVG 133 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777776666543
No 20
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.31 E-value=3.2e+02 Score=23.66 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009434 221 AAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSI 272 (535)
Q Consensus 221 ea~ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si 272 (535)
+........++++..-...|+..-.+++..=...-+.+..+.+||-.|+.+|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666666655655555555566677777777777665
No 21
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=26.03 E-value=48 Score=32.68 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=15.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009434 77 VIYRRSFLEKKGLTKEEIDEAFRRVP 102 (535)
Q Consensus 77 l~kKi~FLesKGLT~eEId~Al~ra~ 102 (535)
+.-+++||++.|+++++|-.++.+.+
T Consensus 86 l~p~l~fL~~lG~s~~~i~~il~~~P 111 (343)
T 3mva_O 86 LSKRWDLWRKIVTSDLEIVNILERSP 111 (343)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCC
Confidence 45556666666666666666666553
No 22
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.33 E-value=92 Score=24.46 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=30.2
Q ss_pred CCCCCCchHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009434 70 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (535)
Q Consensus 70 P~V~~SPl~kKi~FLesKGLT~eEId~Al~ra~~ 103 (535)
|.+...|.+.+|+=|-+-|.+.+++..||..+..
T Consensus 2 ~~~~~~~~e~~I~~L~~lGF~r~~ai~AL~~a~n 35 (53)
T 2d9s_A 2 SSGSSGQLSSEIERLMSQGYSYQDIQKALVIAHN 35 (53)
T ss_dssp CCSCCSCSHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred CCCCccchHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 5667788999999999999999999999998754
No 23
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=24.20 E-value=92 Score=30.10 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=2.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccccccchh
Q 009434 165 VLAVGLLAASGAGTAVFFKKSLIPRLKSWIRK 196 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~KrYIlP~Lkpptrs 196 (535)
|+++..++|+.| ++-|++-|.+..|--.
T Consensus 57 t~~~~~~~~~~~----~~~K~~Gp~~a~~~D~ 84 (214)
T 2cly_A 57 TFSAISTIGFLV----YIVKKYGASVGEFADK 84 (214)
T ss_dssp --------------------------CHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHhcHHHHHHHHH
Confidence 444444555543 3344455655554443
No 24
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=23.41 E-value=77 Score=25.55 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 009434 233 VAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNN 281 (535)
Q Consensus 233 vakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~~~id~ 281 (535)
.++.|..|..+ |..+.++.......++.+...+..|++.||+
T Consensus 12 Na~~I~~LK~S-------i~~TNeAV~el~~g~~~lavAv~~lQd~IN~ 53 (64)
T 1svf_A 12 NAAAILNLKNA-------IQKTNAAVADVVQATQSLGTAVQAVQDHINS 53 (64)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555 6677777777777777777778777755544
No 25
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.02 E-value=74 Score=23.59 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCCchHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009434 73 RGSPVIYRRSFLEKKGLTKEEIDEAFRRVPD 103 (535)
Q Consensus 73 ~~SPl~kKi~FLesKGLT~eEId~Al~ra~~ 103 (535)
.....+.+|+=|..-|.+.+++..||++++.
T Consensus 4 ~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~ 34 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYERERVVAALRASYN 34 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCHHHHHHHHHTTTS
T ss_pred CCccCHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 3455788999999999999999999998764
No 26
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=22.46 E-value=2.8e+02 Score=21.70 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009434 251 FSELMNLLDVQLQEMKSM 268 (535)
Q Consensus 251 L~~ltk~ld~q~~ElKSl 268 (535)
+.++...+.+..-||-+|
T Consensus 58 i~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 58 STEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444545544444444444
No 27
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.29 E-value=4e+02 Score=25.92 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=40.0
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCccCC
Q 009434 213 PSLAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE-GPSNNSGR 284 (535)
Q Consensus 213 ~~i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~ltk~ld~q~~ElKSl~~si~~L~-~~id~f~~ 284 (535)
...-+++|+.+ +|..+++.+- +..++.+.+++++...|..-...|-....+.+-|..-|.+|- +..++|..
T Consensus 96 e~YWk~lAE~RR~AL~eaLeEN-~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~ 168 (209)
T 2wvr_A 96 SQYWKEVAEKRRKALYEALKEN-EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFES 168 (209)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 34678888887 8888888887 555566667777766665555555544555444444455543 34555544
No 28
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=21.10 E-value=88 Score=27.26 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=24.5
Q ss_pred CCchHHHHHHHHh-------cCCCHHHHHHHHhhCC
Q 009434 74 GSPVIYRRSFLEK-------KGLTKEEIDEAFRRVP 102 (535)
Q Consensus 74 ~SPl~kKi~FLes-------KGLT~eEId~Al~ra~ 102 (535)
...+..|+.+|.. |+||.+||-+++...|
T Consensus 5 ~~~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G 40 (135)
T 3r1f_A 5 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG 40 (135)
T ss_dssp -CCHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccC
Confidence 3568999999999 7899999999998543
Done!