Query 009434
Match_columns 535
No_of_seqs 171 out of 255
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 05:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 65.1 3 0.00022 36.2 4.5 32 158-189 72-103 (144)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 44.0 5.6 0.0004 25.6 1.9 17 168-184 7-23 (27)
3 d1tafb_ a.22.1.3 (B:) TAF(II)6 24.0 19 0.0014 27.7 2.3 28 58-99 42-69 (70)
4 d1v54j_ f.23.4.1 (J:) Mitochon 19.2 37 0.0027 25.2 3.0 19 165-183 34-52 (58)
5 d1ppje2 f.23.12.1 (E:1-69) Iro 15.6 62 0.0045 24.5 3.6 29 159-187 32-60 (69)
6 d1knca_ a.152.1.1 (A:) Antioxi 14.8 54 0.004 28.3 3.5 44 55-101 114-157 (174)
7 d1khda1 a.46.2.1 (A:12-80) Ant 14.7 92 0.0067 22.2 4.3 42 58-99 18-59 (69)
8 d2croa_ a.35.1.2 (A:) cro 434 14.3 67 0.0049 22.4 3.4 24 77-100 4-28 (65)
9 d2cwqa1 a.152.1.4 (A:1-117) Hy 13.6 62 0.0045 25.7 3.3 41 58-101 58-98 (117)
10 d1vkea_ a.152.1.2 (A:) Hypothe 13.5 68 0.0049 25.6 3.5 43 56-101 42-84 (118)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=65.11 E-value=3 Score=36.17 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=29.0
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009434 158 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 189 (535)
Q Consensus 158 rrDWRD~FIMAtV~gGvgYGlY~L~KrYIlP~ 189 (535)
.-+|+-.|..+.++.|++.++|.+.|.||.|-
T Consensus 72 ~gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 72 TNEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999875
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=44.00 E-value=5.6 Score=25.62 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=13.0
Q ss_pred HHHHHHHhHHHHHHHHH
Q 009434 168 VGLLAASGAGTAVFFKK 184 (535)
Q Consensus 168 AtV~gGvgYGlY~L~Kr 184 (535)
.+.++|++|.+|.-+||
T Consensus 7 ~~tl~glf~aayqqykr 23 (27)
T d2e74g1 7 FATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34578999999887775
No 3
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.99 E-value=19 Score=27.69 Aligned_cols=28 Identities=36% Similarity=0.657 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHh
Q 009434 58 EQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 99 (535)
Q Consensus 58 dlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ 99 (535)
++++-|++|+.+-+ .+-||.++|+.||+
T Consensus 42 eiiQeA~KFMrhsk--------------R~~Ltt~Did~ALk 69 (70)
T d1tafb_ 42 RIVQDAAKFMNHAK--------------RQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHTT--------------CSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc--------------cCcCcHHHHHHHHc
Confidence 78999999998864 37799999999996
No 4
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.18 E-value=37 Score=25.22 Aligned_cols=19 Identities=11% Similarity=-0.249 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 009434 165 VLAVGLLAASGAGTAVFFK 183 (535)
Q Consensus 165 FIMAtV~gGvgYGlY~L~K 183 (535)
+-|+-.++|++|.+|.|+.
T Consensus 34 ~Tm~L~~~G~~~s~~~l~~ 52 (58)
T d1v54j_ 34 VTMTLCLGGTLYSLYCLGW 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6688889999999998875
No 5
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.59 E-value=62 Score=24.54 Aligned_cols=29 Identities=0% Similarity=-0.088 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 009434 159 FHWYHAVLAVGLLAASGAGTAVFFKKSLI 187 (535)
Q Consensus 159 rDWRD~FIMAtV~gGvgYGlY~L~KrYIl 187 (535)
|.=.-||+.++...+..||+-.++.++|.
T Consensus 32 Rk~fsYl~~g~~~v~~ay~AK~~V~~fvs 60 (69)
T d1ppje2 32 RKGFSYLVTATTTVGVAYAAKNVVSQFVS 60 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hceehhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44557888888888888888888877775
No 6
>d1knca_ a.152.1.1 (A:) Antioxidant defense protein AhpD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.84 E-value=54 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhhC
Q 009434 55 MREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 101 (535)
Q Consensus 55 ~Redlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ra 101 (535)
..-+||.-||.-...= .--+..=..-+++.|+|++||.++++-+
T Consensus 114 ~~~ELi~LavS~~ngC---~~Ci~~H~~~a~~~G~t~eeI~eai~ia 157 (174)
T d1knca_ 114 ANFELWSFAVSAINGC---SHCLVAHEHTLRTVGVDREAIFEALKAA 157 (174)
T ss_dssp HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4568888888765441 2236677888999999999999999864
No 7
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=14.74 E-value=92 Score=22.22 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHh
Q 009434 58 EQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 99 (535)
Q Consensus 58 dlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ 99 (535)
+-+..++.-+-+..|-+.-+..=.--|..||+|.+||-.+.+
T Consensus 18 ee~~~~~~~i~~g~~~d~qiaafL~al~~kg~t~dEi~g~~~ 59 (69)
T d1khda1 18 EESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAAS 59 (69)
T ss_dssp HHHHHHHHHHTTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 334455555556666544333333335789999999987653
No 8
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=14.31 E-value=67 Score=22.38 Aligned_cols=24 Identities=13% Similarity=-0.065 Sum_probs=19.6
Q ss_pred hHHHHHHH-HhcCCCHHHHHHHHhh
Q 009434 77 VIYRRSFL-EKKGLTKEEIDEAFRR 100 (535)
Q Consensus 77 l~kKi~FL-esKGLT~eEId~Al~r 100 (535)
+.+|+..| +.+|||.+|+-+++.-
T Consensus 4 i~~rlr~~R~~~gltq~~lA~~~gv 28 (65)
T d2croa_ 4 LSERLKKRRIALKMTQTELATKAGV 28 (65)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCc
Confidence 56777766 7899999999988854
No 9
>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727 {Thermus thermophilus [TaxId: 274]}
Probab=13.64 E-value=62 Score=25.72 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhhC
Q 009434 58 EQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 101 (535)
Q Consensus 58 dlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ra 101 (535)
+||.-|+..-..= .--+..-+...++.|+|.+||-++|.-+
T Consensus 58 eLI~la~s~a~gc---~~c~~~h~~~A~~~G~t~eEI~Eal~ia 98 (117)
T d2cwqa1 58 TLILLGIALATGS---EACVKAMAHRAKRLGLSKEALLETLKIA 98 (117)
T ss_dssp HHHHHHHHHHHTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5677676654431 1235566778899999999999999764
No 10
>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga maritima [TaxId: 2336]}
Probab=13.46 E-value=68 Score=25.63 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCchHHHHHHHHhcCCCHHHHHHHHhhC
Q 009434 56 REEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 101 (535)
Q Consensus 56 Redlv~sAV~FL~dP~V~~SPl~kKi~FLesKGLT~eEId~Al~ra 101 (535)
-.+||.-|+.....= .--+..-+.-..+-|+|++||.+++.-+
T Consensus 42 ~keLi~la~s~~~~c---~~c~~~H~~~A~~~G~t~eEI~Eal~va 84 (118)
T d1vkea_ 42 TKELMGLVASTVLRC---DDCIRYHLVRCVQEGASDEEIFEALDIA 84 (118)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---hHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 458888898888541 2336677888999999999999999764
Done!