Query 009435
Match_columns 535
No_of_seqs 348 out of 2585
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 13:05:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02153 epithiospecifier prot 100.0 7.2E-44 1.6E-48 367.9 38.4 302 26-331 17-339 (341)
2 PLN02193 nitrile-specifier pro 100.0 5.4E-43 1.2E-47 375.2 38.3 297 26-332 160-469 (470)
3 KOG4693 Uncharacterized conser 100.0 3.9E-42 8.4E-47 321.6 23.2 277 31-317 13-313 (392)
4 KOG0379 Kelch repeat-containin 100.0 6.6E-40 1.4E-44 350.8 30.0 390 23-431 52-449 (482)
5 KOG4152 Host cell transcriptio 100.0 1.3E-40 2.8E-45 334.2 21.3 300 25-334 26-366 (830)
6 PLN02193 nitrile-specifier pro 100.0 8.8E-38 1.9E-42 334.9 36.5 293 32-341 111-420 (470)
7 KOG4693 Uncharacterized conser 100.0 7.8E-39 1.7E-43 299.4 21.4 251 1-262 54-313 (392)
8 KOG4441 Proteins containing BT 100.0 2.5E-37 5.4E-42 336.0 29.9 283 28-340 272-555 (571)
9 PLN02153 epithiospecifier prot 100.0 1.6E-35 3.5E-40 305.7 34.0 263 67-339 4-292 (341)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 3.7E-35 7.9E-40 303.7 32.4 278 27-329 3-344 (346)
11 TIGR03548 mutarot_permut cycli 100.0 3.5E-35 7.5E-40 301.0 31.6 274 30-325 2-322 (323)
12 PHA02713 hypothetical protein; 100.0 2.8E-35 6.1E-40 321.0 30.2 262 45-337 259-539 (557)
13 PHA02713 hypothetical protein; 100.0 1.5E-35 3.2E-40 323.1 27.9 242 27-286 289-543 (557)
14 KOG1230 Protein containing rep 100.0 1.7E-35 3.6E-40 291.8 21.5 259 24-286 59-350 (521)
15 KOG4441 Proteins containing BT 100.0 4.8E-35 1E-39 318.2 27.4 239 26-285 317-555 (571)
16 PRK14131 N-acetylneuraminic ac 100.0 1.7E-33 3.7E-38 294.2 31.8 280 27-331 24-368 (376)
17 KOG0379 Kelch repeat-containin 100.0 6.6E-34 1.4E-38 304.5 26.7 257 77-342 53-312 (482)
18 PHA03098 kelch-like protein; P 100.0 4.2E-33 9.2E-38 304.7 29.3 235 32-286 285-521 (534)
19 PHA03098 kelch-like protein; P 100.0 5.3E-32 1.1E-36 296.1 29.7 265 45-339 252-519 (534)
20 KOG1230 Protein containing rep 100.0 2.8E-32 6E-37 269.1 19.1 254 80-338 62-347 (521)
21 TIGR03548 mutarot_permut cycli 100.0 1.3E-30 2.8E-35 267.2 27.5 228 26-269 57-321 (323)
22 PHA02790 Kelch-like protein; P 100.0 3.6E-30 7.8E-35 276.9 28.5 207 43-283 271-477 (480)
23 TIGR03547 muta_rot_YjhT mutatr 100.0 9.5E-30 2.1E-34 263.3 27.7 230 27-274 48-344 (346)
24 PRK14131 N-acetylneuraminic ac 100.0 1.6E-29 3.5E-34 264.2 27.7 243 21-282 64-374 (376)
25 PHA02790 Kelch-like protein; P 100.0 8.7E-28 1.9E-32 258.4 28.1 211 90-338 267-477 (480)
26 KOG4152 Host cell transcriptio 100.0 2.7E-28 5.9E-33 245.7 17.6 258 69-338 16-309 (830)
27 COG3055 Uncharacterized protei 99.8 8.2E-17 1.8E-21 158.2 22.2 280 29-330 34-373 (381)
28 KOG2437 Muskelin [Signal trans 99.8 1.3E-19 2.9E-24 183.1 2.1 298 27-332 256-613 (723)
29 COG3055 Uncharacterized protei 99.7 7.2E-15 1.6E-19 144.7 21.1 244 20-279 71-377 (381)
30 KOG2437 Muskelin [Signal trans 99.6 1.6E-15 3.5E-20 153.8 6.5 271 69-342 238-545 (723)
31 PF13964 Kelch_6: Kelch motif 99.1 3.7E-10 8E-15 82.4 6.6 49 84-135 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.0 1.1E-09 2.5E-14 79.8 6.5 50 31-85 1-50 (50)
33 PLN02772 guanylate kinase 98.9 5.9E-09 1.3E-13 107.1 11.8 92 25-120 18-110 (398)
34 PLN02772 guanylate kinase 98.9 8.2E-09 1.8E-13 106.0 11.4 89 80-176 20-110 (398)
35 PF13415 Kelch_3: Galactose ox 98.8 6.9E-09 1.5E-13 75.2 6.1 47 94-143 1-49 (49)
36 PF13415 Kelch_3: Galactose ox 98.8 1.3E-08 2.8E-13 73.8 6.4 48 43-93 1-49 (49)
37 PF07646 Kelch_2: Kelch motif; 98.7 5.3E-08 1.2E-12 70.6 6.4 44 84-127 1-47 (49)
38 PF01344 Kelch_1: Kelch motif; 98.7 4.4E-08 9.6E-13 70.2 5.8 46 241-286 1-46 (47)
39 PF01344 Kelch_1: Kelch motif; 98.7 1.7E-08 3.7E-13 72.4 3.6 43 84-126 1-44 (47)
40 PF13418 Kelch_4: Galactose ox 98.7 2.1E-08 4.6E-13 72.6 4.1 48 31-82 1-48 (49)
41 PF07646 Kelch_2: Kelch motif; 98.7 4.9E-08 1.1E-12 70.8 5.8 46 241-286 1-48 (49)
42 PF13418 Kelch_4: Galactose ox 98.7 2.4E-08 5.3E-13 72.3 4.2 46 241-286 1-47 (49)
43 PF03089 RAG2: Recombination a 98.6 5.5E-06 1.2E-10 80.0 20.1 164 96-263 40-231 (337)
44 PF13854 Kelch_5: Kelch motif 98.5 2.2E-07 4.8E-12 64.9 5.4 40 81-120 1-42 (42)
45 PF13854 Kelch_5: Kelch motif 98.5 3.6E-07 7.7E-12 63.9 5.4 40 238-277 1-41 (42)
46 PF03089 RAG2: Recombination a 98.5 7.5E-05 1.6E-09 72.3 22.7 164 146-319 40-232 (337)
47 smart00612 Kelch Kelch domain. 98.4 4.2E-07 9.2E-12 64.6 4.9 47 96-145 1-47 (47)
48 smart00612 Kelch Kelch domain. 98.2 1.8E-06 3.8E-11 61.4 4.7 47 45-95 1-47 (47)
49 PF07250 Glyoxal_oxid_N: Glyox 98.2 0.00011 2.4E-09 71.6 17.1 153 110-289 46-211 (243)
50 TIGR01640 F_box_assoc_1 F-box 98.1 0.0011 2.3E-08 64.5 22.6 199 60-278 14-230 (230)
51 TIGR01640 F_box_assoc_1 F-box 97.7 0.0085 1.9E-07 58.1 21.6 160 110-287 14-188 (230)
52 PF07250 Glyoxal_oxid_N: Glyox 97.6 0.0019 4.2E-08 62.9 14.6 148 61-234 47-207 (243)
53 PF13360 PQQ_2: PQQ-like domai 97.4 0.14 3E-06 49.4 26.2 179 60-282 3-199 (238)
54 PRK11138 outer membrane biogen 97.4 0.13 2.8E-06 54.2 26.8 194 43-282 69-282 (394)
55 PF13360 PQQ_2: PQQ-like domai 97.4 0.12 2.7E-06 49.7 24.5 185 42-279 35-233 (238)
56 PRK11138 outer membrane biogen 96.8 0.94 2E-05 47.7 27.1 174 60-279 170-356 (394)
57 PF09910 DUF2139: Uncharacteri 96.7 0.76 1.7E-05 45.6 22.2 171 78-276 28-230 (339)
58 TIGR03300 assembly_YfgL outer 96.6 1.1 2.4E-05 46.7 25.7 188 43-282 65-267 (377)
59 PF07893 DUF1668: Protein of u 96.6 0.11 2.5E-06 53.6 17.3 130 89-236 70-218 (342)
60 PF07893 DUF1668: Protein of u 96.3 0.96 2.1E-05 46.8 21.8 122 36-182 70-215 (342)
61 PF12768 Rax2: Cortical protei 95.4 0.66 1.4E-05 46.5 15.6 113 164-285 14-130 (281)
62 KOG2055 WD40 repeat protein [G 95.3 0.81 1.8E-05 47.7 15.9 153 95-279 225-377 (514)
63 PRK05137 tolB translocation pr 95.2 5.4 0.00012 42.6 23.9 210 41-284 211-420 (435)
64 TIGR03300 assembly_YfgL outer 95.2 4.8 0.0001 41.9 26.6 174 60-279 155-341 (377)
65 cd00094 HX Hemopexin-like repe 95.0 2 4.2E-05 40.6 16.9 148 44-228 17-178 (194)
66 cd00216 PQQ_DH Dehydrogenases 94.5 8.9 0.00019 41.7 24.4 126 89-233 56-193 (488)
67 PF08450 SGL: SMP-30/Gluconola 94.1 6 0.00013 38.4 24.0 202 43-285 11-222 (246)
68 PF12768 Rax2: Cortical protei 94.1 0.76 1.6E-05 46.0 12.3 103 206-315 3-110 (281)
69 PRK05137 tolB translocation pr 94.0 10 0.00022 40.5 26.7 148 110-284 226-374 (435)
70 KOG2055 WD40 repeat protein [G 93.8 0.87 1.9E-05 47.5 12.0 116 37-178 263-378 (514)
71 cd00094 HX Hemopexin-like repe 93.7 6.3 0.00014 37.1 17.5 152 89-279 11-178 (194)
72 PRK04792 tolB translocation pr 93.6 12 0.00027 40.1 23.7 189 60-283 242-431 (448)
73 PF05096 Glu_cyclase_2: Glutam 93.6 5.3 0.00012 39.4 16.7 154 43-232 55-210 (264)
74 PRK00178 tolB translocation pr 93.5 12 0.00026 39.7 23.3 197 41-278 208-408 (430)
75 TIGR02800 propeller_TolB tol-p 93.4 12 0.00025 39.4 23.9 148 110-285 214-363 (417)
76 PF02897 Peptidase_S9_N: Proly 92.9 14 0.00031 38.9 21.5 189 60-276 150-357 (414)
77 PRK04792 tolB translocation pr 92.7 16 0.00035 39.2 23.8 149 110-285 242-391 (448)
78 TIGR03866 PQQ_ABC_repeats PQQ- 92.7 11 0.00023 37.0 26.8 185 45-280 2-191 (300)
79 PF08268 FBA_3: F-box associat 92.4 3.2 7E-05 36.1 12.4 85 199-285 4-89 (129)
80 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.3 21 0.00045 39.3 23.1 124 89-233 64-199 (527)
81 cd00216 PQQ_DH Dehydrogenases 92.3 20 0.00043 39.0 25.4 101 166-282 311-432 (488)
82 TIGR02800 propeller_TolB tol-p 92.2 17 0.00037 38.1 22.1 148 60-234 214-363 (417)
83 PRK04922 tolB translocation pr 92.1 19 0.00041 38.4 23.9 186 60-279 228-414 (433)
84 PRK04043 tolB translocation pr 91.8 20 0.00044 38.1 19.8 151 110-286 213-367 (419)
85 PRK00178 tolB translocation pr 91.0 24 0.00052 37.4 25.1 147 110-285 223-372 (430)
86 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.7 30 0.00064 38.1 24.6 210 43-279 69-336 (527)
87 PRK04043 tolB translocation pr 90.4 28 0.0006 37.1 23.2 193 60-284 213-408 (419)
88 PF02897 Peptidase_S9_N: Proly 89.7 30 0.00064 36.5 19.6 194 59-284 201-412 (414)
89 cd00200 WD40 WD40 domain, foun 89.3 19 0.00042 33.9 24.9 193 37-280 14-211 (289)
90 COG1520 FOG: WD40-like repeat 89.0 31 0.00068 35.8 19.6 150 43-231 68-225 (370)
91 PF08450 SGL: SMP-30/Gluconola 88.9 23 0.0005 34.2 19.0 193 94-331 11-213 (246)
92 PF05096 Glu_cyclase_2: Glutam 88.2 29 0.00062 34.4 21.1 159 89-283 49-210 (264)
93 PRK04922 tolB translocation pr 87.3 44 0.00095 35.6 25.6 148 109-284 227-376 (433)
94 PF12217 End_beta_propel: Cata 87.2 32 0.00068 33.8 17.8 261 43-317 25-335 (367)
95 PF09910 DUF2139: Uncharacteri 86.8 37 0.00079 34.1 19.5 129 59-206 77-219 (339)
96 PRK13684 Ycf48-like protein; P 86.5 42 0.00091 34.5 24.5 222 38-314 51-278 (334)
97 PLN00033 photosystem II stabil 86.2 49 0.0011 35.0 27.3 227 41-315 98-347 (398)
98 PRK03629 tolB translocation pr 86.2 51 0.0011 35.1 26.9 149 110-285 223-372 (429)
99 PF02191 OLF: Olfactomedin-lik 86.0 37 0.00081 33.4 17.3 193 94-312 30-236 (250)
100 cd00200 WD40 WD40 domain, foun 85.8 31 0.00068 32.4 25.0 182 45-278 64-251 (289)
101 PTZ00421 coronin; Provisional 85.2 62 0.0013 35.3 21.3 154 95-283 138-297 (493)
102 PF10282 Lactonase: Lactonase, 85.0 21 0.00045 36.8 14.0 171 32-234 144-333 (345)
103 PF08268 FBA_3: F-box associat 84.9 25 0.00054 30.5 12.5 87 91-183 2-89 (129)
104 TIGR03866 PQQ_ABC_repeats PQQ- 84.6 41 0.00089 32.7 27.2 153 37-229 36-191 (300)
105 PF14870 PSII_BNR: Photosynthe 84.6 49 0.0011 33.6 22.5 228 37-316 21-253 (302)
106 PRK13684 Ycf48-like protein; P 83.3 58 0.0013 33.4 23.3 199 68-314 117-321 (334)
107 TIGR02658 TTQ_MADH_Hv methylam 82.9 63 0.0014 33.5 24.0 89 28-124 43-142 (352)
108 PRK02889 tolB translocation pr 82.3 73 0.0016 33.9 23.1 149 110-285 220-369 (427)
109 PF10282 Lactonase: Lactonase, 82.0 65 0.0014 33.1 23.0 232 48-313 3-263 (345)
110 PF03178 CPSF_A: CPSF A subuni 81.6 51 0.0011 33.4 15.1 122 110-259 62-190 (321)
111 PLN00181 protein SPA1-RELATED; 81.1 1.1E+02 0.0025 35.3 23.6 139 95-277 545-691 (793)
112 PF02191 OLF: Olfactomedin-lik 80.5 62 0.0013 31.9 18.7 187 43-258 30-237 (250)
113 PRK03629 tolB translocation pr 78.5 97 0.0021 33.0 23.6 191 60-283 223-413 (429)
114 KOG0310 Conserved WD40 repeat- 78.2 38 0.00083 35.9 12.6 149 90-278 75-227 (487)
115 TIGR03074 PQQ_membr_DH membran 77.1 1.5E+02 0.0032 34.3 24.1 32 88-125 188-221 (764)
116 COG4257 Vgb Streptogramin lyas 75.0 94 0.002 31.0 19.3 186 61-285 125-314 (353)
117 PF14583 Pectate_lyase22: Olig 74.3 1.2E+02 0.0026 31.9 16.3 245 39-317 43-304 (386)
118 PF14870 PSII_BNR: Photosynthe 73.8 1.1E+02 0.0023 31.1 21.1 214 43-313 71-293 (302)
119 KOG2321 WD40 repeat protein [G 72.6 33 0.00071 37.3 10.5 77 131-228 130-208 (703)
120 PRK02889 tolB translocation pr 72.0 1.4E+02 0.003 31.7 23.9 183 60-277 220-404 (427)
121 TIGR03074 PQQ_membr_DH membran 72.0 2E+02 0.0042 33.3 24.2 60 214-279 411-480 (764)
122 PLN02919 haloacid dehalogenase 70.5 2.5E+02 0.0054 33.9 27.3 158 94-279 694-891 (1057)
123 PF02239 Cytochrom_D1: Cytochr 70.4 1.4E+02 0.0031 31.1 15.4 261 34-336 80-352 (369)
124 PLN00033 photosystem II stabil 70.2 1.5E+02 0.0033 31.3 25.9 216 44-313 147-388 (398)
125 PRK01742 tolB translocation pr 66.3 1.8E+02 0.004 30.8 21.8 162 60-260 228-391 (429)
126 smart00284 OLF Olfactomedin-li 66.0 1.4E+02 0.0031 29.4 18.7 194 94-312 34-241 (255)
127 PF03178 CPSF_A: CPSF A subuni 65.7 1.6E+02 0.0034 29.8 14.6 121 60-206 62-189 (321)
128 PF02239 Cytochrom_D1: Cytochr 65.4 1.8E+02 0.0039 30.4 14.9 191 60-290 16-216 (369)
129 PRK11028 6-phosphogluconolacto 65.2 1.6E+02 0.0034 29.7 23.5 211 37-285 85-315 (330)
130 COG2706 3-carboxymuconate cycl 64.9 1.7E+02 0.0037 30.0 19.5 185 25-234 134-332 (346)
131 COG1520 FOG: WD40-like repeat 63.5 1.9E+02 0.0041 29.9 21.9 189 61-275 122-319 (370)
132 KOG0316 Conserved WD40 repeat- 63.1 1.5E+02 0.0033 28.8 15.2 178 60-279 81-260 (307)
133 KOG0310 Conserved WD40 repeat- 60.1 2.4E+02 0.0053 30.1 19.4 176 91-318 119-302 (487)
134 KOG0296 Angio-associated migra 58.9 2.3E+02 0.0049 29.4 15.1 144 43-228 75-223 (399)
135 KOG0649 WD40 repeat protein [G 57.6 2E+02 0.0043 28.3 19.2 138 37-207 120-263 (325)
136 KOG0649 WD40 repeat protein [G 55.9 2.1E+02 0.0046 28.1 15.6 126 131-285 112-244 (325)
137 KOG2048 WD40 repeat protein [G 55.8 3.4E+02 0.0073 30.4 21.1 114 198-334 391-508 (691)
138 PRK11028 6-phosphogluconolacto 55.7 2.3E+02 0.005 28.5 25.5 233 36-313 39-292 (330)
139 PRK10115 protease 2; Provision 55.4 3.7E+02 0.0079 30.7 21.2 217 37-286 177-404 (686)
140 COG4946 Uncharacterized protei 54.5 3.1E+02 0.0066 29.6 22.8 185 60-285 287-486 (668)
141 COG3823 Glutamine cyclotransfe 54.0 2.1E+02 0.0045 27.5 13.9 153 43-234 55-216 (262)
142 PF13088 BNR_2: BNR repeat-lik 49.4 2.6E+02 0.0056 27.2 18.9 228 69-311 29-275 (275)
143 PLN03215 ascorbic acid mannose 48.6 3.4E+02 0.0074 28.4 15.9 105 69-185 189-305 (373)
144 PRK01742 tolB translocation pr 48.5 3.6E+02 0.0077 28.6 22.2 140 110-284 228-369 (429)
145 KOG1332 Vesicle coat complex C 48.3 1.3E+02 0.0028 29.5 8.9 120 28-182 162-295 (299)
146 KOG2321 WD40 repeat protein [G 48.2 1.6E+02 0.0035 32.3 10.4 125 29-180 131-264 (703)
147 PRK10115 protease 2; Provision 48.0 4.7E+02 0.01 29.8 26.3 168 94-284 182-354 (686)
148 PLN00181 protein SPA1-RELATED; 46.6 5.2E+02 0.011 29.9 26.4 173 61-278 556-740 (793)
149 KOG0772 Uncharacterized conser 45.6 4.4E+02 0.0094 28.7 21.2 200 93-334 225-448 (641)
150 COG0823 TolB Periplasmic compo 45.3 4.1E+02 0.0089 28.4 14.5 129 165-316 261-391 (425)
151 cd05694 S1_Rrp5_repeat_hs2_sc2 42.2 34 0.00074 26.7 3.5 39 398-438 7-53 (74)
152 PF15525 DUF4652: Domain of un 42.1 2.2E+02 0.0047 26.8 9.0 76 209-286 80-158 (200)
153 PLN03215 ascorbic acid mannose 41.0 4.5E+02 0.0097 27.6 14.6 98 119-234 189-303 (373)
154 smart00284 OLF Olfactomedin-li 37.6 4.2E+02 0.009 26.2 19.3 186 44-257 35-241 (255)
155 PTZ00421 coronin; Provisional 36.8 5.9E+02 0.013 27.7 17.9 62 45-121 139-201 (493)
156 KOG3881 Uncharacterized conser 36.6 3.6E+02 0.0077 28.2 10.4 147 145-318 161-313 (412)
157 PRK01029 tolB translocation pr 36.5 5.5E+02 0.012 27.3 20.2 62 217-285 351-412 (428)
158 PF13570 PQQ_3: PQQ-like domai 36.3 79 0.0017 21.0 4.2 25 89-119 16-40 (40)
159 TIGR02658 TTQ_MADH_Hv methylam 34.9 5.4E+02 0.012 26.7 27.4 117 45-180 14-142 (352)
160 KOG0318 WD40 repeat stress pro 34.7 5.3E+02 0.011 28.2 11.6 77 31-121 442-520 (603)
161 PF13088 BNR_2: BNR repeat-lik 34.3 4.4E+02 0.0095 25.5 13.7 215 29-256 44-275 (275)
162 PLN02919 haloacid dehalogenase 32.9 9.6E+02 0.021 29.0 32.3 211 42-286 578-843 (1057)
163 COG4880 Secreted protein conta 32.6 6.4E+02 0.014 26.9 13.4 64 50-120 396-459 (603)
164 KOG1036 Mitotic spindle checkp 31.2 5.7E+02 0.012 25.9 17.5 130 60-227 35-165 (323)
165 KOG1332 Vesicle coat complex C 30.9 5.3E+02 0.011 25.4 13.0 55 223-285 241-296 (299)
166 KOG0316 Conserved WD40 repeat- 30.3 5.4E+02 0.012 25.3 10.4 91 166-280 81-177 (307)
167 TIGR01624 LRP1_Cterm LRP1 C-te 29.5 64 0.0014 23.0 2.7 23 408-430 27-49 (50)
168 KOG0285 Pleiotropic regulator 28.7 5.9E+02 0.013 26.5 10.4 197 200-424 162-377 (460)
169 KOG0294 WD40 repeat-containing 26.1 7.2E+02 0.016 25.4 17.0 29 387-421 242-275 (362)
170 KOG0281 Beta-TrCP (transducin 26.1 5.6E+02 0.012 26.5 9.7 185 90-332 242-431 (499)
171 COG3391 Uncharacterized conser 26.0 7.6E+02 0.017 25.7 20.7 160 41-232 83-246 (381)
172 KOG1538 Uncharacterized conser 25.4 1E+03 0.022 27.0 13.6 59 35-104 16-74 (1081)
173 PF05182 Fip1: Fip1 motif; In 24.7 20 0.00044 25.2 -0.4 14 401-414 18-31 (45)
174 KOG0266 WD40 repeat-containing 24.1 9E+02 0.02 25.8 20.9 182 60-278 225-411 (456)
175 KOG3669 Uncharacterized conser 22.2 6.5E+02 0.014 27.9 9.8 58 167-234 209-270 (705)
176 COG4946 Uncharacterized protei 22.0 1E+03 0.022 25.8 21.6 70 200-284 370-439 (668)
No 1
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=7.2e-44 Score=367.92 Aligned_cols=302 Identities=27% Similarity=0.428 Sum_probs=242.7
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcCCC-CCCcceEEEEEcCCCeEEEeeccCCCCCC-CCceEEEEECCEEEEEcCC
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKD-NCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTVGENLYVFGGT 103 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~-~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~~~~Iyv~GG~ 103 (535)
+..|.||.+|+++++ +++|||+||.... ....+++|+||+.+++|..++..+..|.. +.+|++++++++||||||.
T Consensus 17 ~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 17 GKGPGPRCSHGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGR 94 (341)
T ss_pred CCCCCCCCcceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCC
Confidence 357999999999998 5689999998543 23457899999999999997644444443 4579999999999999999
Q ss_pred CCCCCCCcEEEEECCCCeEEecccc--CCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEe
Q 009435 104 DGMNPLRDLHILDTSSHTWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (535)
Q Consensus 104 ~~~~~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~ 181 (535)
+....++++++||+.+++|+.++.. ...|.+|..|+++.++++||||||+...........++++++||+.+++|+.+
T Consensus 95 ~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l 174 (341)
T PLN02153 95 DEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL 174 (341)
T ss_pred CCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeC
Confidence 8777789999999999999987632 12388999999999999999999986432222223468999999999999999
Q ss_pred ccCCCCCCCCCceeEEeeCCEEEEEecCCCC-------CcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEE
Q 009435 182 TTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNL 254 (535)
Q Consensus 182 ~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~-------~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~i 254 (535)
+..+.+|.+|..|++++++++|||+||.... ....+++++||+.+++|+.+...+..|.+|..|+++.++++|
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~i 254 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYI 254 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEE
Confidence 8776677899999999999999999997421 223678999999999999998877789999999999999999
Q ss_pred EEEeccCC--------CCCccCcEEEEecCCCcEEEEeeCCCC--CCCceeeeeeeecccCCCEEEEEcccCCCCCccCc
Q 009435 255 FVFGGFTD--------SQNLYDDLYMIDVDSGLWTKVITTGEG--PSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 324 (535)
Q Consensus 255 yv~GG~~~--------~~~~~~dv~~yd~~~~~W~~l~~~~~~--p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d 324 (535)
|||||... .....+++|+||+++++|+.+...+.. |..+..++.+.+ ..++.|||+||++...+.++|
T Consensus 255 yv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v--~~~~~~~~~gG~~~~~~~~~~ 332 (341)
T PLN02153 255 IIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATV--YGKNGLLMHGGKLPTNERTDD 332 (341)
T ss_pred EEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCcccccccccc--CCcceEEEEcCcCCCCccccc
Confidence 99999742 233568999999999999999765444 444443343332 445689999999888788999
Q ss_pred EEEEecc
Q 009435 325 MYYLYTG 331 (535)
Q Consensus 325 v~~l~~~ 331 (535)
+|.++..
T Consensus 333 ~~~~~~~ 339 (341)
T PLN02153 333 LYFYAVN 339 (341)
T ss_pred eEEEecc
Confidence 9998643
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.4e-43 Score=375.19 Aligned_cols=297 Identities=28% Similarity=0.433 Sum_probs=250.1
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcCCCCC-CcceEEEEEcCCCeEEEeeccCCCCC-CCCceEEEEECCEEEEEcCC
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNC-QTNQVHVFDTVNQTWSQPVIKGSPPT-PRDSHSCTTVGENLYVFGGT 103 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~-~~~~~~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~Iyv~GG~ 103 (535)
+..|.+|.+|+++++ +++|||+||...... ..+++|+||+.+++|..++..+.+|. .|.+|+++.++++||||||.
T Consensus 160 ~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~ 237 (470)
T PLN02193 160 GEGPGLRCSHGIAQV--GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGR 237 (470)
T ss_pred CCCCCCccccEEEEE--CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCC
Confidence 457899999999999 668999999854332 44689999999999998776556665 46789999999999999999
Q ss_pred CCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEecc
Q 009435 104 DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (535)
Q Consensus 104 ~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~ 183 (535)
+....++++|+||+.+++|+++...+..|.+|..|+++.++++||||||+. .....+++++||+.+++|+.++.
T Consensus 238 ~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~------~~~~~~~~~~yd~~t~~W~~~~~ 311 (470)
T PLN02193 238 DASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVS------ATARLKTLDSYNIVDKKWFHCST 311 (470)
T ss_pred CCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCC------CCCCcceEEEEECCCCEEEeCCC
Confidence 887788999999999999999875555689999999999999999999964 23356899999999999999987
Q ss_pred CCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCC-
Q 009435 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD- 262 (535)
Q Consensus 184 ~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~- 262 (535)
.+.+|.+|..|++++++++|||+||.++. .++++++||+.+++|+.+...+..|.+|..|+++.++++|||+||...
T Consensus 312 ~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~ 389 (470)
T PLN02193 312 PGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAM 389 (470)
T ss_pred CCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCC
Confidence 66778899999999999999999998654 468999999999999999887777899999999999999999999853
Q ss_pred -------CCCccCcEEEEecCCCcEEEEeeCC---CCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccc
Q 009435 263 -------SQNLYDDLYMIDVDSGLWTKVITTG---EGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 332 (535)
Q Consensus 263 -------~~~~~~dv~~yd~~~~~W~~l~~~~---~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~ 332 (535)
.....+++|+||+.+++|+.+...+ ..|.+|..++++......++.|+++||.+.....++|+|+|+++.
T Consensus 390 ~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 390 DPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred ccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 1235689999999999999997654 357888766543322234466999999998888999999998653
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.9e-42 Score=321.59 Aligned_cols=277 Identities=29% Similarity=0.575 Sum_probs=245.1
Q ss_pred ccccceEEEEcCCCEEEEECCcCCCC----CCcceEEEEEcCCCeEEEeec----------cCCCCCCCCceEEEEECCE
Q 009435 31 KRWGHTCNAIKGGRFLYVFGGYGKDN----CQTNQVHVFDTVNQTWSQPVI----------KGSPPTPRDSHSCTTVGEN 96 (535)
Q Consensus 31 ~R~gh~~~~v~~~~~Iyi~GG~~~~~----~~~~~~~~yd~~t~~W~~l~~----------~g~~P~~R~~hs~~~~~~~ 96 (535)
.|.+|++++| +..||-|||+.... ...-+++++|..+..|.+++. -+..|-.|++|+.+.++++
T Consensus 13 rRVNHAavaV--G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 13 RRVNHAAVAV--GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred ccccceeeee--cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 7899999999 77999999984432 123479999999999998763 0123566999999999999
Q ss_pred EEEEcCCCC-CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCC
Q 009435 97 LYVFGGTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 175 (535)
Q Consensus 97 Iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t 175 (535)
+||+||+++ .+..|-+++||+.++.|.++++.|-+|.+|.+|++|++++.+|||||+.+ ....+.++++++|..+
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~----~a~~FS~d~h~ld~~T 166 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE----DAQRFSQDTHVLDFAT 166 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHH----HHHhhhccceeEeccc
Confidence 999999977 56789999999999999999999999999999999999999999999863 3456789999999999
Q ss_pred ccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCC--------CcccCceEEEECCCCcEEEeecCCCCCCCceeeEE
Q 009435 176 FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH--------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (535)
Q Consensus 176 ~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~--------~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~ 247 (535)
-+|+.+.+.+.+|.=|..|+++++++.+|||||..+. ..+.+.|..+|+.|..|......+..|..|..|++
T Consensus 167 mtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~ 246 (392)
T KOG4693|consen 167 MTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHST 246 (392)
T ss_pred eeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccce
Confidence 9999999999999999999999999999999998643 34677899999999999999888888999999999
Q ss_pred EEECCEEEEEeccCCCC-CccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 248 VAFGKNLFVFGGFTDSQ-NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 248 v~~~~~iyv~GG~~~~~-~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
.+++++||+|||++..- .-++|+|.||+.+..|..+.+.+..|++|..+++++. ++++|+|||-..
T Consensus 247 fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~----g~kv~LFGGTsP 313 (392)
T KOG4693|consen 247 FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS----GGKVYLFGGTSP 313 (392)
T ss_pred EEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEE----CCEEEEecCCCC
Confidence 99999999999998653 3479999999999999999999999999998886654 899999999754
No 4
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=6.6e-40 Score=350.76 Aligned_cols=390 Identities=35% Similarity=0.554 Sum_probs=316.3
Q ss_pred cccCCCCcccccceEEEEcCCCEEEEECCcCCCCCCcc-eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEc
Q 009435 23 EISSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTN-QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFG 101 (535)
Q Consensus 23 ~~~g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~-~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~G 101 (535)
...+..|.+|++|+++.+ ++++|||||........+ ++|++|..+..|......+..|.+|.+|++++++++||+||
T Consensus 52 ~~~~~~p~~R~~hs~~~~--~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLI--GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred ccCCCCcchhhccceeEE--CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 457789999999999999 778999999977654444 69999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE
Q 009435 102 GTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (535)
Q Consensus 102 G~~~-~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~ 180 (535)
|.+. ...+++++.||+.|++|..+...+.+|.+|.+|+++.++++||||||++... ...|++|+||+.+.+|.+
T Consensus 130 G~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~-----~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTG-----DSLNDLHIYDLETSTWSE 204 (482)
T ss_pred cccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcc-----cceeeeeeecccccccee
Confidence 9985 5678999999999999999999999999999999999999999999975432 278999999999999999
Q ss_pred eccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEecc
Q 009435 181 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF 260 (535)
Q Consensus 181 ~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~ 260 (535)
+.+.+..|.||.+|++++++++++|+||.+..+.+++|+|.||+.+.+|..+...+..|.+|++|+++..+++++++||.
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred cccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 99999999999999999999999999999877779999999999999999999889999999999999999999999999
Q ss_pred CCCCC-ccCcEEEEecCCCcEEEEeeCC-CCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccc----
Q 009435 261 TDSQN-LYDDLYMIDVDSGLWTKVITTG-EGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN---- 334 (535)
Q Consensus 261 ~~~~~-~~~dv~~yd~~~~~W~~l~~~~-~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~---- 334 (535)
..... .+.++|.||+++..|..+.... ..|.+|..++..++.........++||.........+++.+......
T Consensus 285 ~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (482)
T KOG0379|consen 285 TDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRKNE 364 (482)
T ss_pred cccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccccCCc
Confidence 87533 6899999999999999999887 78999999999888766677788888877777777788766544332
Q ss_pred cccccchhhhhhhhhhhhccccCCccCcceEEecccCCCCCCCCccccCCCCCCCcCCCcccceeeeEeeeecCCceeEE
Q 009435 335 ERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLNEGKKTFQAKVTESFPLGYTIE 414 (535)
Q Consensus 335 ~~~~~~l~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~g~k~f~~r~~~~~~~~~~~~ 414 (535)
+.+.......+.....+........ ......-... .........+....+.|+..++...-...|++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
T KOG0379|consen 365 VQEPGTRAVEKVLALFRAESSAICI-------AELLYHERRR-----RNDSLKNTLQVKELSILCLDRIGLETFEKYTQE 432 (482)
T ss_pred ccccccccchhhHhhhhccccccch-------HHhhhcchhh-----hcccccceecccchhhhhhhhhhhhccchhhhh
Confidence 2222333333333333333210000 0000000000 011112233444778888888888999999999
Q ss_pred EeEcCceeeeeeeecCC
Q 009435 415 TTIDGKPLRGILFANKP 431 (535)
Q Consensus 415 ~~~~~~~~~~~~~~~~~ 431 (535)
.+++..-...+.|.++-
T Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (482)
T KOG0379|consen 433 SLTLFLFGGNVDLTEES 449 (482)
T ss_pred hhhhhhhccccCcchhc
Confidence 99988888888777664
No 5
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.3e-40 Score=334.20 Aligned_cols=300 Identities=32% Similarity=0.545 Sum_probs=259.8
Q ss_pred cCCCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCC
Q 009435 25 SSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD 104 (535)
Q Consensus 25 ~g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~ 104 (535)
.|+-|.||+||.++++.+ .|+||||.+.. ..+++++||..+++|....+.|+.|.+.+.|+++..+.+||+|||+-
T Consensus 26 tGPvPrpRHGHRAVaikE--LiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMv 101 (830)
T KOG4152|consen 26 TGPVPRPRHGHRAVAIKE--LIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMV 101 (830)
T ss_pred cCCCCCccccchheeeee--eEEEecCCccc--chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEe
Confidence 678899999999999954 89999997654 67899999999999999999999999999999999999999999997
Q ss_pred CC-CCCCcEEEEECCCCeEEecc----ccCCCCCCCCCeEEEEECCEEEEEcCCCCCCC---CCCceeeeeEEEEECCCc
Q 009435 105 GM-NPLRDLHILDTSSHTWISPS----VRGEGPEAREGHSAALVGKRLFIFGGCGKSSN---TNDEVYYNDLYILNTETF 176 (535)
Q Consensus 105 ~~-~~~~~~~~yd~~t~~W~~~~----~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~---~~~~~~~n~v~~yd~~t~ 176 (535)
.. .+.|++|.+.....+|+++. ..|.+|+||.+|+..+++++.|+|||..++.+ ++-..|+||+|++++..+
T Consensus 102 EYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~G 181 (830)
T KOG4152|consen 102 EYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPG 181 (830)
T ss_pred eeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccC
Confidence 65 47899999998889998764 36779999999999999999999999976543 334578999999999854
Q ss_pred ----cEEEeccCCCCCCCCCceeEEee------CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeE
Q 009435 177 ----VWKRATTSGNPPSARDSHTCSSW------KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS 246 (535)
Q Consensus 177 ----~W~~~~~~~~~p~~r~~~s~~~~------~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs 246 (535)
.|....+.|..|.+|.+|+++++ ..++|||||+++. .+.|+|.+|+++..|.+....|..|.||+.|+
T Consensus 182 sgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHs 259 (830)
T KOG4152|consen 182 SGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHS 259 (830)
T ss_pred CceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCCCCccccc
Confidence 59999999999999999999998 3479999999876 79999999999999999999999999999999
Q ss_pred EEEECCEEEEEeccCCC-------------CCccCcEEEEecCCCcEEEEee----CCCCCCCceeeeeeeecccCCCEE
Q 009435 247 TVAFGKNLFVFGGFTDS-------------QNLYDDLYMIDVDSGLWTKVIT----TGEGPSARFSVAGDCLDPLKGGVL 309 (535)
Q Consensus 247 ~v~~~~~iyv~GG~~~~-------------~~~~~dv~~yd~~~~~W~~l~~----~~~~p~~r~~~~~~~~~~~~~~~l 309 (535)
++.++++||||||+..- -.+.+.+-++++.+..|+.+-. ....|++|.+|+++.+ +.+|
T Consensus 260 a~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi----gtRl 335 (830)
T KOG4152|consen 260 ATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI----GTRL 335 (830)
T ss_pred ceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe----ccEE
Confidence 99999999999998531 1357889999999999998743 2236999999988766 7899
Q ss_pred EEEcccCCC------CCccCcEEEEeccccc
Q 009435 310 VFIGGCNKS------LEALDDMYYLYTGLVN 334 (535)
Q Consensus 310 ~v~GG~~~~------~~~~~dv~~l~~~~~~ 334 (535)
||--|.+.- .....|+|.||++...
T Consensus 336 YiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 336 YIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred EEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 998877642 3457799999988654
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.8e-38 Score=334.92 Aligned_cols=293 Identities=26% Similarity=0.394 Sum_probs=241.3
Q ss_pred cccceEEEEcCCCEEEEECCcCCCCCCcceEEEE--EcCC----CeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCC
Q 009435 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVF--DTVN----QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG 105 (535)
Q Consensus 32 R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~y--d~~t----~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~ 105 (535)
..|...+ + .+++|+.|+|.... ..+.+-+| ++.+ ++|.++...+.+|.+|.+|+++.++++|||+||...
T Consensus 111 ~~g~~f~-~-~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~ 186 (470)
T PLN02193 111 RPGVKFV-L-QGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFT 186 (470)
T ss_pred CCCCEEE-E-cCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCC
Confidence 3444443 4 36789999997654 34555444 6544 899998866778999999999999999999999753
Q ss_pred C-C-CCCcEEEEECCCCeEEeccccCCCCC-CCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 106 M-N-PLRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 106 ~-~-~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
. . ..+++|+||+.+++|..++..++.|. +|.+|+++.++++||||||+.. ...++++++||+.+++|+++.
T Consensus 187 ~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~------~~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 187 PNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA------SRQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred CCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC------CCCCccEEEEECCCCEEEEcC
Confidence 2 2 44789999999999998876655665 4678999999999999999642 235789999999999999998
Q ss_pred cCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCC
Q 009435 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~ 262 (535)
+.+..|.+|..|++++++++|||+||.+... .++++++||+.+++|+.+...+.+|.+|.+|+++.++++|||+||...
T Consensus 261 ~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g 339 (470)
T PLN02193 261 PVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG 339 (470)
T ss_pred cCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC
Confidence 7666689999999999999999999987644 578999999999999999876667889999999999999999999854
Q ss_pred CCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC--------CCccCcEEEEeccccc
Q 009435 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVN 334 (535)
Q Consensus 263 ~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~dv~~l~~~~~~ 334 (535)
...+++++||+.+++|+.+...+..|.+|..|+++.+ +++|||+||.... ...++|+|.||+.+..
T Consensus 340 --~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 340 --CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred --CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 3468999999999999999888778899998887655 7899999998641 2356899999999999
Q ss_pred cccccch
Q 009435 335 ERKLEKL 341 (535)
Q Consensus 335 ~~~~~~l 341 (535)
|..+..+
T Consensus 414 W~~~~~~ 420 (470)
T PLN02193 414 WERLDKF 420 (470)
T ss_pred EEEcccC
Confidence 8766543
No 7
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=7.8e-39 Score=299.44 Aligned_cols=251 Identities=29% Similarity=0.577 Sum_probs=222.9
Q ss_pred CceeEeccCCCchhhhcccccccccCC---CCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeec
Q 009435 1 MRWEKVQPKSPQALVAQQLVSSEISSS---GPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVI 77 (535)
Q Consensus 1 ~~W~~~~~~~~~~~~~~~~~~~~~~g~---~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~ 77 (535)
|||.++++--- -..|+++ -|..|+||+.+.+. +++||+||.+.+....|-+++||+++++|.++.+
T Consensus 54 ~RWtk~pp~~~---------ka~i~~~yp~VPyqRYGHtvV~y~--d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v 122 (392)
T KOG4693|consen 54 YRWTKMPPGIT---------KATIESPYPAVPYQRYGHTVVEYQ--DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEV 122 (392)
T ss_pred eeEEecCcccc---------cccccCCCCccchhhcCceEEEEc--ceEEEEcCccCcccccceeeeeccccccccccce
Confidence 68888875311 1223333 46799999999994 4899999999888788999999999999999999
Q ss_pred cCCCCCCCCceEEEEECCEEEEEcCCCC--CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCC
Q 009435 78 KGSPPTPRDSHSCTTVGENLYVFGGTDG--MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGK 155 (535)
Q Consensus 78 ~g~~P~~R~~hs~~~~~~~Iyv~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~ 155 (535)
.|..|.+|.+|+++++++.+|||||+.. ....++++++|..|.+|+.+.+.|.+|.-|..|+++++++.+|||||+.+
T Consensus 123 ~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D 202 (392)
T KOG4693|consen 123 EGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSD 202 (392)
T ss_pred eeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccc
Confidence 9999999999999999999999999854 34679999999999999999999999999999999999999999999865
Q ss_pred CCC---CCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCC-CcccCceEEEECCCCcEEE
Q 009435 156 SSN---TNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTLTWKE 231 (535)
Q Consensus 156 ~~~---~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~-~~~~~~i~~yd~~t~~W~~ 231 (535)
... ...+.|.+.+..+|+.+..|....+.+..|..|.+|++.+++++||+|||+++. +.-++++|+|||.+..|..
T Consensus 203 ~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~ 282 (392)
T KOG4693|consen 203 ESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSV 282 (392)
T ss_pred cCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchhee
Confidence 432 234678899999999999999998888889999999999999999999999875 4568999999999999999
Q ss_pred eecCCCCCCCceeeEEEEECCEEEEEeccCC
Q 009435 232 LNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (535)
Q Consensus 232 v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~ 262 (535)
+...|..|.+|..+++++.++++|+|||...
T Consensus 283 I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 283 ISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999999999999999999999764
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=336.01 Aligned_cols=283 Identities=23% Similarity=0.394 Sum_probs=246.0
Q ss_pred CCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCC-CC
Q 009435 28 GPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-GM 106 (535)
Q Consensus 28 ~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~-~~ 106 (535)
.+.+|..... ...+.||++||........+.+..||+.+++|..+. ++|.+|..+++++++++||++||++ +.
T Consensus 272 ~~~~~t~~r~---~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~ 345 (571)
T KOG4441|consen 272 MQSPRTRPRR---SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGS 345 (571)
T ss_pred ccCCCcccCc---CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCC
Confidence 3444444443 234579999999875557788999999999999976 8999999999999999999999999 78
Q ss_pred CCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCC
Q 009435 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (535)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~ 186 (535)
..++.+|+||+.+++|..++ +|..+|.+++++++++.||++||.+ +..+++.+++||+.+++|+.+. +
T Consensus 346 ~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~d------g~~~l~svE~YDp~~~~W~~va---~ 413 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFD------GEKSLNSVECYDPVTNKWTPVA---P 413 (571)
T ss_pred cccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEeccc------cccccccEEEecCCCCcccccC---C
Confidence 89999999999999999987 8999999999999999999999953 6677899999999999999998 6
Q ss_pred CCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCc
Q 009435 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (535)
Q Consensus 187 ~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~ 266 (535)
++.+|.+|++++++++||++||.++....++.+++|||.+++|+.+++ ++.+|.++++++++++||++||+++ ...
T Consensus 414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~---M~~~R~~~g~a~~~~~iYvvGG~~~-~~~ 489 (571)
T KOG4441|consen 414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP---MNTRRSGFGVAVLNGKIYVVGGFDG-TSA 489 (571)
T ss_pred CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC---cccccccceEEEECCEEEEECCccC-CCc
Confidence 777999999999999999999998887789999999999999999988 8999999999999999999999987 556
Q ss_pred cCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccccccccc
Q 009435 267 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (535)
Q Consensus 267 ~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (535)
...+++||+++++|+.+.++ +.+|..+..+.+ ++++|++||++.. ..++.+-.++.....|+....
T Consensus 490 ~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~----~~~ly~vGG~~~~-~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 490 LSSVERYDPETNQWTMVAPM---TSPRSAVGVVVL----GGKLYAVGGFDGN-NNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cceEEEEcCCCCceeEcccC---ccccccccEEEE----CCEEEEEecccCc-cccceeEEcCCCCCceeeCCC
Confidence 77799999999999999665 556666554443 8999999997655 567778888888888766544
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.6e-35 Score=305.70 Aligned_cols=263 Identities=29% Similarity=0.443 Sum_probs=214.1
Q ss_pred cCCCeEEEeec-cCCCCCCCCceEEEEECCEEEEEcCCCCC--CCCCcEEEEECCCCeEEeccccCCCCCC-CCCeEEEE
Q 009435 67 TVNQTWSQPVI-KGSPPTPRDSHSCTTVGENLYVFGGTDGM--NPLRDLHILDTSSHTWISPSVRGEGPEA-REGHSAAL 142 (535)
Q Consensus 67 ~~t~~W~~l~~-~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~--~~~~~~~~yd~~t~~W~~~~~~g~~p~~-r~~hs~~~ 142 (535)
+...+|.++.. .+.+|.+|..|++++++++|||+||.... ...+++++||+.+++|++++..+..|.. +.+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999874 34579999999999999999999998542 3458999999999999988754444433 45799999
Q ss_pred ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccC--CCCCCCCCceeEEeeCCEEEEEecCCCCC-----cc
Q 009435 143 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS--GNPPSARDSHTCSSWKNKIIVIGGEDGHD-----YY 215 (535)
Q Consensus 143 ~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~--~~~p~~r~~~s~~~~~~~lyv~GG~~~~~-----~~ 215 (535)
++++||||||... ...++++++||+.+++|+.++.. ...|.+|..|++++++++|||+||.+... ..
T Consensus 84 ~~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 84 VGTKLYIFGGRDE------KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred ECCEEEEECCCCC------CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcc
Confidence 9999999999642 23468999999999999998743 12378999999999999999999986432 24
Q ss_pred cCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCC-------CCccCcEEEEecCCCcEEEEeeCCC
Q 009435 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS-------QNLYDDLYMIDVDSGLWTKVITTGE 288 (535)
Q Consensus 216 ~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~-------~~~~~dv~~yd~~~~~W~~l~~~~~ 288 (535)
++++++||+++++|+.+...+..|.+|.+|+++.++++|||+||.... ....+++++||+.+++|+++...+.
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~ 237 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA 237 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence 578999999999999998766667899999999999999999997521 1236889999999999999988777
Q ss_pred CCCCceeeeeeeecccCCCEEEEEcccCC--------CCCccCcEEEEecccccccccc
Q 009435 289 GPSARFSVAGDCLDPLKGGVLVFIGGCNK--------SLEALDDMYYLYTGLVNERKLE 339 (535)
Q Consensus 289 ~p~~r~~~~~~~~~~~~~~~l~v~GG~~~--------~~~~~~dv~~l~~~~~~~~~~~ 339 (535)
.|.+|..|+++++ +++|||+||... .....+|+|.|++.+..|..+.
T Consensus 238 ~P~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 238 KPSARSVFAHAVV----GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CCCCcceeeeEEE----CCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 7899998887655 799999999742 2234679999999988887664
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.7e-35 Score=303.75 Aligned_cols=278 Identities=23% Similarity=0.306 Sum_probs=216.7
Q ss_pred CCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEc--CCCeEEEeeccCCCC-CCCCceEEEEECCEEEEEcCC
Q 009435 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDT--VNQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (535)
Q Consensus 27 ~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~--~t~~W~~l~~~g~~P-~~R~~hs~~~~~~~Iyv~GG~ 103 (535)
++|.+|..++++++ +++|||+||... +.+++||+ .+++|..++ ++| .+|..|++++++++|||+||.
T Consensus 3 ~lp~~~~~~~~~~~--~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~ 72 (346)
T TIGR03547 3 DLPVGFKNGTGAII--GDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGI 72 (346)
T ss_pred CCCccccCceEEEE--CCEEEEEccccC-----CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCC
Confidence 46889988887788 668999999732 57899996 578999976 777 589999999999999999998
Q ss_pred CCCC------CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEE-EECCEEEEEcCCCCCCC-----------C------
Q 009435 104 DGMN------PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSN-----------T------ 159 (535)
Q Consensus 104 ~~~~------~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~-----------~------ 159 (535)
.... .++++|+||+.+++|++++. .+|.+|.+|+++ +++++||++||+..... .
T Consensus 73 ~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T TIGR03547 73 GKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD 150 (346)
T ss_pred CCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence 5422 47899999999999999862 467778888777 78999999999752100 0
Q ss_pred -----------CCceeeeeEEEEECCCccEEEeccCCCCCC-CCCceeEEeeCCEEEEEecCCCCCcccCceEEEE--CC
Q 009435 160 -----------NDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD--TD 225 (535)
Q Consensus 160 -----------~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~-~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd--~~ 225 (535)
.....++++++||+.+++|+.+. ++|. +|..++++.++++|||+||.........+++.|| ++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~ 227 (346)
T TIGR03547 151 KLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG 227 (346)
T ss_pred hhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCC
Confidence 00012478999999999999987 5564 6888999999999999999865443345566665 57
Q ss_pred CCcEEEeecCCCCCCCc-------eeeEEEEECCEEEEEeccCCCC----------------CccCcEEEEecCCCcEEE
Q 009435 226 TLTWKELNTSGMVLSPR-------AGHSTVAFGKNLFVFGGFTDSQ----------------NLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 226 t~~W~~v~~~g~~p~~R-------~~hs~v~~~~~iyv~GG~~~~~----------------~~~~dv~~yd~~~~~W~~ 282 (535)
+++|+.+.. +|.+| .+|+++.++++|||+||..... ...+.+++||+++++|+.
T Consensus 228 ~~~W~~~~~---m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 304 (346)
T TIGR03547 228 KLEWNKLPP---LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK 304 (346)
T ss_pred CceeeecCC---CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc
Confidence 789999886 44443 4677888999999999985311 012468999999999999
Q ss_pred EeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEe
Q 009435 283 VITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 329 (535)
Q Consensus 283 l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~ 329 (535)
+..+ |.+|..++++. .+++|||+||.+..+..++|+|.+.
T Consensus 305 ~~~l---p~~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 305 VGKL---PQGLAYGVSVS----WNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cCCC---CCCceeeEEEE----cCCEEEEEeccCCCCCEeeeEEEEE
Confidence 9765 66787766543 4899999999998888999999774
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.5e-35 Score=301.03 Aligned_cols=274 Identities=19% Similarity=0.251 Sum_probs=212.3
Q ss_pred cccccceEEEEcCCCEEEEECCcCCCC---------CCcceEEEEEcCC--CeEEEeeccCCCCCCCCceEEEEECCEEE
Q 009435 30 GKRWGHTCNAIKGGRFLYVFGGYGKDN---------CQTNQVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLY 98 (535)
Q Consensus 30 ~~R~gh~~~~v~~~~~Iyi~GG~~~~~---------~~~~~~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~Iy 98 (535)
..+.|+.++++ ++.|||+||.+... ...+++++|+... .+|..+. ++|.+|..+++++++++||
T Consensus 2 ~~~~g~~~~~~--~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII--GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE--CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEE
Confidence 46788999999 66899999986543 2346788886333 3798854 8899999999999999999
Q ss_pred EEcCCCCCCCCCcEEEEECCCCeEE-eccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc
Q 009435 99 VFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (535)
Q Consensus 99 v~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~ 177 (535)
++||.++...++++++||+.+++|. .....+++|.+|..|++++++++|||+||.. .....+++++||+.+++
T Consensus 77 viGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~------~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 77 YIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR------NGKPSNKSYLFNLETQE 150 (323)
T ss_pred EEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC------CCccCceEEEEcCCCCC
Confidence 9999988778899999999999983 2222348999999999999999999999953 22346899999999999
Q ss_pred EEEeccCCCCC-CCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCC--CCCCceeeEE-EEECCE
Q 009435 178 WKRATTSGNPP-SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM--VLSPRAGHST-VAFGKN 253 (535)
Q Consensus 178 W~~~~~~~~~p-~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~--~p~~R~~hs~-v~~~~~ 253 (535)
|+.++ ++| .+|..|++++++++|||+||.+.. ...++++||+++++|+.+..... .|..+..+++ +..+++
T Consensus 151 W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 151 WFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred eeECC---CCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 99987 344 478899999999999999998653 34678999999999999876321 2333444444 445789
Q ss_pred EEEEeccCCCC-------------------------------CccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeec
Q 009435 254 LFVFGGFTDSQ-------------------------------NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 302 (535)
Q Consensus 254 iyv~GG~~~~~-------------------------------~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~ 302 (535)
|||+||..... .+.+++++||+.+++|+.+..++ ..+|..++++.+
T Consensus 226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~~r~~~~~~~~- 302 (323)
T TIGR03548 226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP--FFARCGAALLLT- 302 (323)
T ss_pred EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc--ccccCchheEEE-
Confidence 99999986321 12467999999999999997542 246777765544
Q ss_pred ccCCCEEEEEcccCCCCCccCcE
Q 009435 303 PLKGGVLVFIGGCNKSLEALDDM 325 (535)
Q Consensus 303 ~~~~~~l~v~GG~~~~~~~~~dv 325 (535)
+++||++||..+...+..++
T Consensus 303 ---~~~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 303 ---GNNIFSINGELKPGVRTPDI 322 (323)
T ss_pred ---CCEEEEEeccccCCcCCcCc
Confidence 89999999987765554443
No 12
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=320.97 Aligned_cols=262 Identities=14% Similarity=0.142 Sum_probs=217.2
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCC-CCCCCCcEEEEECCCCeEE
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-GMNPLRDLHILDTSSHTWI 123 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~-~~~~~~~~~~yd~~t~~W~ 123 (535)
.|++.||.... ....+++||+.+++|..++ ++|.+|.+|++++++++||++||.+ +...++++++||+.+++|.
T Consensus 259 ~l~~~~g~~~~--~~~~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~ 333 (557)
T PHA02713 259 CLVCHDTKYNV--CNPCILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV 333 (557)
T ss_pred EEEEecCcccc--CCCCEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe
Confidence 35566653211 2246899999999999976 8999999999999999999999986 3446789999999999999
Q ss_pred eccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEE
Q 009435 124 SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKI 203 (535)
Q Consensus 124 ~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~l 203 (535)
.++ ++|.+|..+++++++++||++||.. +....+++++||+.+++|..++ ++|.+|..+++++++++|
T Consensus 334 ~~~---~m~~~R~~~~~~~~~g~IYviGG~~------~~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~I 401 (557)
T PHA02713 334 ELP---PMIKNRCRFSLAVIDDTIYAIGGQN------GTNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYI 401 (557)
T ss_pred eCC---CCcchhhceeEEEECCEEEEECCcC------CCCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEE
Confidence 887 8999999999999999999999963 2234678999999999999987 689999999999999999
Q ss_pred EEEecCCCCC-----------------cccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCc
Q 009435 204 IVIGGEDGHD-----------------YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 266 (535)
Q Consensus 204 yv~GG~~~~~-----------------~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~ 266 (535)
|++||.+... ..++.+++|||++++|+.+.+ ++.+|..+++++++++|||+||.+.....
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~---m~~~r~~~~~~~~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN---FWTGTIRPGVVSHKDDIYVVCDIKDEKNV 478 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC---CCcccccCcEEEECCEEEEEeCCCCCCcc
Confidence 9999986431 125789999999999999987 88899999999999999999998754333
Q ss_pred cCcEEEEecCC-CcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEecccccccc
Q 009435 267 YDDLYMIDVDS-GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERK 337 (535)
Q Consensus 267 ~~dv~~yd~~~-~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~ 337 (535)
.+.+++||+++ ++|+.+.++ |.+|..+.++++ +++||++||++.. ..+..++..+.+|..
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~----~~~iyv~Gg~~~~----~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELITTT---ESRLSALHTILH----DNTIMMLHCYESY----MLQDTFNVYTYEWNH 539 (557)
T ss_pred ceeEEEecCCCCCCeeEcccc---CcccccceeEEE----CCEEEEEeeecce----eehhhcCcccccccc
Confidence 45689999999 899999876 778888777665 8999999998763 245556666556543
No 13
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=323.12 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=209.1
Q ss_pred CCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCC
Q 009435 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM 106 (535)
Q Consensus 27 ~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~ 106 (535)
++|.+|.+|+++++ +++||++||.+......+.+++||+.+++|..++ ++|.+|..+++++++++||++||.++.
T Consensus 289 ~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~ 363 (557)
T PHA02713 289 TIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGT 363 (557)
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCC
Confidence 57889999988888 6689999998644445788999999999999865 899999999999999999999999877
Q ss_pred CCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCC------------CCceeeeeEEEEECC
Q 009435 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNT------------NDEVYYNDLYILNTE 174 (535)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~------------~~~~~~n~v~~yd~~ 174 (535)
..++.+++||+.+++|..++ ++|.+|.++++++++++|||+||.+..... ......+.+++||+.
T Consensus 364 ~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 364 NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred CCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 77889999999999999877 899999999999999999999997532100 011236789999999
Q ss_pred CccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCC-CcEEEeecCCCCCCCceeeEEEEECCE
Q 009435 175 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVAFGKN 253 (535)
Q Consensus 175 t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W~~v~~~g~~p~~R~~hs~v~~~~~ 253 (535)
+++|+.++ +++.+|..+++++++++|||+||.++.....+.+++|||++ ++|+.+.+ +|.+|..+.+++++++
T Consensus 441 td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---m~~~r~~~~~~~~~~~ 514 (557)
T PHA02713 441 NNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---TESRLSALHTILHDNT 514 (557)
T ss_pred CCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---cCcccccceeEEECCE
Confidence 99999987 67889999999999999999999875443445689999999 89999987 8999999999999999
Q ss_pred EEEEeccCCCCCccCcEEEEecCCCcEEEEeeC
Q 009435 254 LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 254 iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
||++||+.+ ...+++||+.+++|+.+.+.
T Consensus 515 iyv~Gg~~~----~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 515 IMMLHCYES----YMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred EEEEeeecc----eeehhhcCcccccccchhhh
Confidence 999999865 24689999999999988654
No 14
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=291.84 Aligned_cols=259 Identities=29% Similarity=0.563 Sum_probs=226.1
Q ss_pred ccCCCCcccccceEEEEcCCCEEEEECCc---CCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEEC-CEEEE
Q 009435 24 ISSSGPGKRWGHTCNAIKGGRFLYVFGGY---GKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYV 99 (535)
Q Consensus 24 ~~g~~P~~R~gh~~~~v~~~~~Iyi~GG~---~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Iyv 99 (535)
.+-++|.||...++++-+..+.|++|||. +......+++|.||+.+++|+++. .+..|.||.+|.++++. +.+||
T Consensus 59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~ 137 (521)
T KOG1230|consen 59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWL 137 (521)
T ss_pred ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEec-cCCCcCCCccceeEEeccCeEEE
Confidence 34578999999999999887889999997 223345789999999999999987 67889999999999996 88999
Q ss_pred EcCCCCC----C--CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 100 FGGTDGM----N--PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 100 ~GG~~~~----~--~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
|||--.+ . .+.|+|.||+.+++|+++...| .|.||.+|-|++...+|+||||.... .....|+||||+||+
T Consensus 138 fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~--nr~y~YyNDvy~FdL 214 (521)
T KOG1230|consen 138 FGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDS--NRDYIYYNDVYAFDL 214 (521)
T ss_pred eccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecC--CCceEEeeeeEEEec
Confidence 9995221 1 4689999999999999999765 89999999999999999999998765 456789999999999
Q ss_pred CCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCC--------CCCcccCceEEEECCC-----CcEEEeecCCCCC
Q 009435 174 ETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGED--------GHDYYLSDVHILDTDT-----LTWKELNTSGMVL 239 (535)
Q Consensus 174 ~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~--------~~~~~~~~i~~yd~~t-----~~W~~v~~~g~~p 239 (535)
++.+|.++.+.+..|.+|.+|++.+. ++.|||+||+. ..+...+|+|.+++.. -.|+.+.+.|..|
T Consensus 215 dtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP 294 (521)
T KOG1230|consen 215 DTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP 294 (521)
T ss_pred cceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC
Confidence 99999999998888999999999988 99999999985 2355788999999988 7899999999999
Q ss_pred CCceeeEEEEECC-EEEEEeccCCC--------CCccCcEEEEecCCCcEEEEeeC
Q 009435 240 SPRAGHSTVAFGK-NLFVFGGFTDS--------QNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 240 ~~R~~hs~v~~~~-~iyv~GG~~~~--------~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
.||+++++++..+ +.+.|||..+- +.++||+|.||+..++|......
T Consensus 295 spRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 295 SPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred CCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhc
Confidence 9999999988765 99999998762 34789999999999999977543
No 15
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.8e-35 Score=318.16 Aligned_cols=239 Identities=26% Similarity=0.478 Sum_probs=216.4
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCC
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG 105 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~ 105 (535)
..+|.+|..++++++ +++||++||++......+.+++||+.+++|..++ +|+.+|.+++++++++.||++||.++
T Consensus 317 a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg 391 (571)
T KOG4441|consen 317 APMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDG 391 (571)
T ss_pred CCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccc
Confidence 357889998888888 5689999999854447789999999999999965 99999999999999999999999999
Q ss_pred CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC
Q 009435 106 MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (535)
Q Consensus 106 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~ 185 (535)
...++.+++||+.+++|..+. +++.+|.+|++++.+++||++||++. ...+++.+++|||.+++|+.++
T Consensus 392 ~~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~-----~~~~l~sve~YDP~t~~W~~~~--- 460 (571)
T KOG4441|consen 392 EKSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDG-----SSNCLNSVECYDPETNTWTLIA--- 460 (571)
T ss_pred ccccccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCC-----CccccceEEEEcCCCCceeecC---
Confidence 999999999999999998877 78889999999999999999999642 2227899999999999999998
Q ss_pred CCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCC
Q 009435 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN 265 (535)
Q Consensus 186 ~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~ 265 (535)
+++.+|..+++++++++||++||.++ ......+++|||.+++|+.+.. ++.+|..+.++..++++|++||+.. ..
T Consensus 461 ~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~---m~~~rs~~g~~~~~~~ly~vGG~~~-~~ 535 (571)
T KOG4441|consen 461 PMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAP---MTSPRSAVGVVVLGGKLYAVGGFDG-NN 535 (571)
T ss_pred CcccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEccc---CccccccccEEEECCEEEEEecccC-cc
Confidence 78999999999999999999999988 4466779999999999999976 8889999999999999999999754 56
Q ss_pred ccCcEEEEecCCCcEEEEee
Q 009435 266 LYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~ 285 (535)
.++.+..||+.+++|+.+..
T Consensus 536 ~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 536 NLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccceeEEcCCCCCceeeCCC
Confidence 78999999999999998865
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.7e-33 Score=294.21 Aligned_cols=280 Identities=21% Similarity=0.262 Sum_probs=214.2
Q ss_pred CCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcC--CCeEEEeeccCCCC-CCCCceEEEEECCEEEEEcCC
Q 009435 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (535)
Q Consensus 27 ~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~~l~~~g~~P-~~R~~hs~~~~~~~Iyv~GG~ 103 (535)
++|.+|..++++++ +++|||+||... +.+++||+. +++|..++ ++| .+|.+|+++.++++|||+||.
T Consensus 24 ~lP~~~~~~~~~~~--~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 24 DLPVPFKNGTGAID--NNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred CCCcCccCCeEEEE--CCEEEEEeCCCC-----CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCC
Confidence 57888888887777 668999999742 458999986 47899865 565 589999999999999999998
Q ss_pred CC------CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEE-ECCEEEEEcCCCCCCC------------------
Q 009435 104 DG------MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSN------------------ 158 (535)
Q Consensus 104 ~~------~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~------------------ 158 (535)
.. ...++++|+||+.+++|+.++. ..|.++.+|+++. .+++|||+||......
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~ 171 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD 171 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence 64 1246899999999999999873 3577788888777 8999999999742100
Q ss_pred ----------CCCceeeeeEEEEECCCccEEEeccCCCCCC-CCCceeEEeeCCEEEEEecCCCCCcccCceE--EEECC
Q 009435 159 ----------TNDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVH--ILDTD 225 (535)
Q Consensus 159 ----------~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~-~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~--~yd~~ 225 (535)
.......+++++||+.+++|..+. ++|. +|..|+++.++++|||+||....+....+++ .||++
T Consensus 172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~ 248 (376)
T PRK14131 172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN 248 (376)
T ss_pred hhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence 000013578999999999999986 4564 7888899999999999999754443445555 45778
Q ss_pred CCcEEEeecCCCCCCCce--------eeEEEEECCEEEEEeccCCCCC----------------ccCcEEEEecCCCcEE
Q 009435 226 TLTWKELNTSGMVLSPRA--------GHSTVAFGKNLFVFGGFTDSQN----------------LYDDLYMIDVDSGLWT 281 (535)
Q Consensus 226 t~~W~~v~~~g~~p~~R~--------~hs~v~~~~~iyv~GG~~~~~~----------------~~~dv~~yd~~~~~W~ 281 (535)
+++|..+.. +|.+|. ++.++.++++|||+||...... ....+++||+++++|+
T Consensus 249 ~~~W~~~~~---~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 325 (376)
T PRK14131 249 NLKWQKLPD---LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQ 325 (376)
T ss_pred CcceeecCC---CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccc
Confidence 999999886 555543 3446778999999999753211 0124679999999999
Q ss_pred EEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEecc
Q 009435 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (535)
Q Consensus 282 ~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (535)
.+..+ |.+|..++++.+ ++.|||+||.......+++++.+...
T Consensus 326 ~~~~l---p~~r~~~~av~~----~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 326 KVGEL---PQGLAYGVSVSW----NNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred ccCcC---CCCccceEEEEe----CCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 88655 778877765444 89999999987766789999988754
No 17
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=6.6e-34 Score=304.53 Aligned_cols=257 Identities=36% Similarity=0.632 Sum_probs=232.1
Q ss_pred ccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCC--cEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCC
Q 009435 77 IKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLR--DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCG 154 (535)
Q Consensus 77 ~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~--~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~ 154 (535)
..+..|.+|..|+++.+++++|||||........ ++|++|..+..|......+..|.+|++|+++.++++||+|||..
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 4567899999999999999999999987665554 49999999999999999999999999999999999999999975
Q ss_pred CCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeec
Q 009435 155 KSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 155 ~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
+ .....++++.||+.+.+|..+...+.+|.+|.+|++++++++||||||.+......+++|+||+++.+|.++..
T Consensus 133 ~-----~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 133 K-----KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred C-----CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceeccc
Confidence 4 23348999999999999999999999999999999999999999999998877789999999999999999999
Q ss_pred CCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcc
Q 009435 235 SGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (535)
Q Consensus 235 ~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (535)
.|..|.||.+|+++.++++++|+||.+....+++|+|.||+.+..|..+...+..|.+|+.|..++. +..++++||
T Consensus 208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~----~~~~~l~gG 283 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS----GDHLLLFGG 283 (482)
T ss_pred CCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEE----CCEEEEEcC
Confidence 9999999999999999999999999986778899999999999999999999999999999998754 889999999
Q ss_pred cCCCCC-ccCcEEEEeccccccccccchh
Q 009435 315 CNKSLE-ALDDMYYLYTGLVNERKLEKLS 342 (535)
Q Consensus 315 ~~~~~~-~~~dv~~l~~~~~~~~~~~~l~ 342 (535)
+..... .+.|+|.|+.....|..+.-..
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred Ccccccccccccccccccccceeeeeccc
Confidence 987544 6899999998877776554433
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.2e-33 Score=304.68 Aligned_cols=235 Identities=21% Similarity=0.347 Sum_probs=204.0
Q ss_pred cccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCc
Q 009435 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRD 111 (535)
Q Consensus 32 R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~ 111 (535)
+..|+++++ +++||++||........+++++||+.+++|..++ ++|.+|..|+++.++++||++||.++...+++
T Consensus 285 ~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~ 359 (534)
T PHA03098 285 VYCFGSVVL--NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNT 359 (534)
T ss_pred cccceEEEE--CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCEecce
Confidence 445677777 6689999999766656678999999999999865 78999999999999999999999987777899
Q ss_pred EEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 112 LHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
+++||+.+++|+..+ ++|.+|.+|+++.++++|||+||.... ...++++++||+.+++|+.+. ++|.+|
T Consensus 360 v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~---~~p~~r 428 (534)
T PHA03098 360 VESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKN-----DELLKTVECFSLNTNKWSKGS---PLPISH 428 (534)
T ss_pred EEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCC-----CcccceEEEEeCCCCeeeecC---CCCccc
Confidence 999999999999877 789999999999999999999996432 223689999999999999987 678899
Q ss_pred CceeEEeeCCEEEEEecCCCCCc--ccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCc
Q 009435 192 DSHTCSSWKNKIIVIGGEDGHDY--YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 192 ~~~s~~~~~~~lyv~GG~~~~~~--~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~d 269 (535)
..|++++++++|||+||.+.... .++.+++||+.+++|+.+.. ++.+|..++++.++++|||+||.... ...++
T Consensus 429 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~ 504 (534)
T PHA03098 429 YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS---LNFPRINASLCIFNNKIYVVGGDKYE-YYINE 504 (534)
T ss_pred cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC---CCcccccceEEEECCEEEEEcCCcCC-cccce
Confidence 99999999999999999865432 35679999999999999876 77889999999999999999998753 34688
Q ss_pred EEEEecCCCcEEEEeeC
Q 009435 270 LYMIDVDSGLWTKVITT 286 (535)
Q Consensus 270 v~~yd~~~~~W~~l~~~ 286 (535)
+++||+++++|+.+...
T Consensus 505 v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 505 IEVYDDKTNTWTLFCKF 521 (534)
T ss_pred eEEEeCCCCEEEecCCC
Confidence 99999999999988654
No 19
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.3e-32 Score=296.06 Aligned_cols=265 Identities=15% Similarity=0.212 Sum_probs=217.3
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCC-CCCcEEEEECCCCeEE
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMN-PLRDLHILDTSSHTWI 123 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~-~~~~~~~yd~~t~~W~ 123 (535)
.+++.||.+. ....+..|+..+++|..+. ..|. +..|++++++++||++||.+... ..+++++||+.+++|.
T Consensus 252 ~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 252 IIYIHITMSI---FTYNYITNYSPLSEINTII---DIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN 324 (534)
T ss_pred ceEeecccch---hhceeeecchhhhhccccc---Cccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee
Confidence 4556566541 2345667888889999864 3332 45578999999999999987644 5679999999999998
Q ss_pred eccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEE
Q 009435 124 SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKI 203 (535)
Q Consensus 124 ~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~l 203 (535)
.++ ++|.+|.+|+++.++++||++||.. .....+++++||+.+++|+.++ ++|.+|..|+++.++++|
T Consensus 325 ~~~---~~~~~R~~~~~~~~~~~lyv~GG~~------~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~i 392 (534)
T PHA03098 325 KVP---ELIYPRKNPGVTVFNNRIYVIGGIY------NSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLI 392 (534)
T ss_pred ECC---CCCcccccceEEEECCEEEEEeCCC------CCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEE
Confidence 876 7889999999999999999999964 3345789999999999999987 678899999999999999
Q ss_pred EEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCC--ccCcEEEEecCCCcEE
Q 009435 204 IVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN--LYDDLYMIDVDSGLWT 281 (535)
Q Consensus 204 yv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~--~~~dv~~yd~~~~~W~ 281 (535)
||+||.......++++++||+.+++|+.+.+ +|.+|.+|+++.++++|||+||...... .++.+++||+.+++|+
T Consensus 393 Yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 393 YVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred EEECCcCCCCcccceEEEEeCCCCeeeecCC---CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 9999976555567899999999999999876 7889999999999999999999864332 3567999999999999
Q ss_pred EEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEecccccccccc
Q 009435 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLE 339 (535)
Q Consensus 282 ~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~ 339 (535)
.+..+ |.+|..++++.+ +++|||+||.+.. ...++++.++.....|..+.
T Consensus 470 ~~~~~---~~~r~~~~~~~~----~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 470 ELSSL---NFPRINASLCIF----NNKIYVVGGDKYE-YYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred eCCCC---CcccccceEEEE----CCEEEEEcCCcCC-cccceeEEEeCCCCEEEecC
Confidence 98765 567777765544 7999999998764 34678999998888876553
No 20
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=269.14 Aligned_cols=254 Identities=29% Similarity=0.517 Sum_probs=216.2
Q ss_pred CCCCCCCceEEEEE--CCEEEEEcCC--CCCC--CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEEC-CEEEEEcC
Q 009435 80 SPPTPRDSHSCTTV--GENLYVFGGT--DGMN--PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGG 152 (535)
Q Consensus 80 ~~P~~R~~hs~~~~--~~~Iyv~GG~--~~~~--~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG 152 (535)
++|.||.+.++++. .+.|++|||- ++.. .++++|+||+.+++|+++... +.|.||..|.++++. +.+|||||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEecc
Confidence 67899999999887 4569999994 4433 569999999999999998754 678999999999887 89999999
Q ss_pred CCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCC---CcccCceEEEECCCCcE
Q 009435 153 CGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH---DYYLSDVHILDTDTLTW 229 (535)
Q Consensus 153 ~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~---~~~~~~i~~yd~~t~~W 229 (535)
--.+.+.....-+.|+|.||+.+.+|+++...+ .|++|.+|-|+++.++|+||||+... ..++||+|+||+++.+|
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceee
Confidence 766554444555789999999999999998775 79999999999999999999998543 34799999999999999
Q ss_pred EEeecCCCCCCCceeeEEEEE-CCEEEEEeccCC--------CCCccCcEEEEecCC-----CcEEEEeeCCCCCCCcee
Q 009435 230 KELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTD--------SQNLYDDLYMIDVDS-----GLWTKVITTGEGPSARFS 295 (535)
Q Consensus 230 ~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~--------~~~~~~dv~~yd~~~-----~~W~~l~~~~~~p~~r~~ 295 (535)
+++.+.|..|.||++|++.+. .+.|||+||++. .+...+|+|.+++++ =.|.++.+.+..|.+|.+
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg 299 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG 299 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc
Confidence 999998888999999999888 899999999963 245689999999998 479999999999999988
Q ss_pred eeeeeecccCCCEEEEEcccCCC--------CCccCcEEEEeccccccccc
Q 009435 296 VAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVNERKL 338 (535)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~dv~~l~~~~~~~~~~ 338 (535)
.+.++. .+++-++|||.... +..+||+|.+++...+|.+.
T Consensus 300 fsv~va---~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 300 FSVAVA---KNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eeEEEe---cCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 875443 57789999997541 34589999999998888765
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=1.3e-30 Score=267.16 Aligned_cols=228 Identities=18% Similarity=0.273 Sum_probs=181.0
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEE-EeeccCCCCCCCCceEEEEECCEEEEEcCCC
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWS-QPVIKGSPPTPRDSHSCTTVGENLYVFGGTD 104 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~ 104 (535)
.++|.+|..|+++++ +++||++||.+... ..+++++||+.+++|. .....+++|.+|.+|++++++++|||+||..
T Consensus 57 ~~lp~~r~~~~~~~~--~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~ 133 (323)
T TIGR03548 57 GQLPYEAAYGASVSV--ENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR 133 (323)
T ss_pred ccCCccccceEEEEE--CCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC
Confidence 367889988888888 56899999986543 5689999999999983 2222458999999999999999999999986
Q ss_pred CCCCCCcEEEEECCCCeEEeccccCCCC-CCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEecc
Q 009435 105 GMNPLRDLHILDTSSHTWISPSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (535)
Q Consensus 105 ~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~ 183 (535)
....++++++||+.+++|++++ ++| .+|..|+++.++++|||+||... ...+++++||+.+++|+.+..
T Consensus 134 ~~~~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~-------~~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 134 NGKPSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELYVFGGGSN-------IAYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred CCccCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEEEEcCCCC-------ccccceEEEecCCCeeEECCC
Confidence 6667899999999999999887 555 47999999999999999999632 124678999999999999975
Q ss_pred CC--CCCCCCCceeE-EeeCCEEEEEecCCCCC-------------------------------cccCceEEEECCCCcE
Q 009435 184 SG--NPPSARDSHTC-SSWKNKIIVIGGEDGHD-------------------------------YYLSDVHILDTDTLTW 229 (535)
Q Consensus 184 ~~--~~p~~r~~~s~-~~~~~~lyv~GG~~~~~-------------------------------~~~~~i~~yd~~t~~W 229 (535)
.. ..|..+..++. ++.+++|||+||.+... .+.+++++||+.+++|
T Consensus 204 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 283 (323)
T TIGR03548 204 PTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKW 283 (323)
T ss_pred CCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCee
Confidence 42 23444444444 44579999999986421 1246799999999999
Q ss_pred EEeecCCCCC-CCceeeEEEEECCEEEEEeccCCCCCccCc
Q 009435 230 KELNTSGMVL-SPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 230 ~~v~~~g~~p-~~R~~hs~v~~~~~iyv~GG~~~~~~~~~d 269 (535)
+.+.. +| .+|.+++++.++++||++||....+...++
T Consensus 284 ~~~~~---~p~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~~ 321 (323)
T TIGR03548 284 KSIGN---SPFFARCGAALLLTGNNIFSINGELKPGVRTPD 321 (323)
T ss_pred eEccc---ccccccCchheEEECCEEEEEeccccCCcCCcC
Confidence 99975 44 589999999999999999998665443333
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=3.6e-30 Score=276.86 Aligned_cols=207 Identities=15% Similarity=0.320 Sum_probs=182.1
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
++.||++||.+.. ...+.+++||+.+++|..++ ++|.+|..++++.++++||++||.++. +.+++||+.+++|
T Consensus 271 ~~~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNN-EIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCC-CcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC---CceEEEECCCCeE
Confidence 5689999998643 35678999999999999966 889999999999999999999997542 6799999999999
Q ss_pred EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCE
Q 009435 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~ 202 (535)
..++ ++|.+|.+|++++++++||++||.... .+.+++||+.+++|+.++ +++.+|..+++++++++
T Consensus 344 ~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~--------~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 344 VNMP---SLLKPRCNPAVASINNVIYVIGGHSET--------DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred EECC---CCCCCCcccEEEEECCEEEEecCcCCC--------CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 9887 899999999999999999999996311 257899999999999987 67889999999999999
Q ss_pred EEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEE
Q 009435 203 IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 203 lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (535)
|||+||. +.+||+++++|+.+.+ ++.+|..+++++++++|||+||.... ...+.+++||+++++|+.
T Consensus 410 IYv~GG~---------~e~ydp~~~~W~~~~~---m~~~r~~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 410 LFLVGRN---------AEFYCESSNTWTLIDD---PIYPRDNPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEEECCc---------eEEecCCCCcEeEcCC---CCCCccccEEEEECCEEEEECCcCCC-cccceEEEEECCCCeEEe
Confidence 9999983 5789999999999976 78899999999999999999998643 346789999999999975
Q ss_pred E
Q 009435 283 V 283 (535)
Q Consensus 283 l 283 (535)
.
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 4
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=9.5e-30 Score=263.30 Aligned_cols=230 Identities=20% Similarity=0.312 Sum_probs=180.1
Q ss_pred CCC-cccccceEEEEcCCCEEEEECCcCCCC-----CCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEE-EECCEEEE
Q 009435 27 SGP-GKRWGHTCNAIKGGRFLYVFGGYGKDN-----CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCT-TVGENLYV 99 (535)
Q Consensus 27 ~~P-~~R~gh~~~~v~~~~~Iyi~GG~~~~~-----~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~Iyv 99 (535)
++| .+|..|+++++ +++|||+||..... ..++++++||+.+++|+.++. .+|.+|.+|+++ .++++||+
T Consensus 48 ~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYv 123 (346)
T TIGR03547 48 DFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYF 123 (346)
T ss_pred CCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEE
Confidence 356 48999998888 66899999985432 246789999999999999752 467778888776 68999999
Q ss_pred EcCCCCCC----------------------------------CCCcEEEEECCCCeEEeccccCCCCC-CCCCeEEEEEC
Q 009435 100 FGGTDGMN----------------------------------PLRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVG 144 (535)
Q Consensus 100 ~GG~~~~~----------------------------------~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~hs~~~~~ 144 (535)
+||.+... .++++++||+.+++|+.+. ++|. +|.+++++.++
T Consensus 124 iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~ 200 (346)
T TIGR03547 124 TGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKG 200 (346)
T ss_pred EcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEEC
Confidence 99986321 2478999999999999987 6775 78999999999
Q ss_pred CEEEEEcCCCCCCCCCCceeeeeEEEEE--CCCccEEEeccCCCCCCCC-------CceeEEeeCCEEEEEecCCCCC--
Q 009435 145 KRLFIFGGCGKSSNTNDEVYYNDLYILN--TETFVWKRATTSGNPPSAR-------DSHTCSSWKNKIIVIGGEDGHD-- 213 (535)
Q Consensus 145 ~~lyv~GG~~~~~~~~~~~~~n~v~~yd--~~t~~W~~~~~~~~~p~~r-------~~~s~~~~~~~lyv~GG~~~~~-- 213 (535)
++|||+||..... ....+++.|+ +.+++|..+.. +|.+| ..|++++++++|||+||.+...
T Consensus 201 ~~iyv~GG~~~~~-----~~~~~~~~y~~~~~~~~W~~~~~---m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~ 272 (346)
T TIGR03547 201 NKLLLINGEIKPG-----LRTAEVKQYLFTGGKLEWNKLPP---LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQ 272 (346)
T ss_pred CEEEEEeeeeCCC-----ccchheEEEEecCCCceeeecCC---CCCCCCCccccccEEeeeEECCEEEEeecCCCCCch
Confidence 9999999964221 1234555554 57789999874 44433 4566788899999999985321
Q ss_pred --------------cccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEe
Q 009435 214 --------------YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMID 274 (535)
Q Consensus 214 --------------~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd 274 (535)
.....+++||+++++|+.+.. +|.+|..++++.++++|||+||.+..+..+++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 273 ENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK---LPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred hhhhcCCccccCCCCceeEeeEEEecCCcccccCC---CCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 012358899999999999976 8889999999999999999999987777888888764
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.6e-29 Score=264.25 Aligned_cols=243 Identities=19% Similarity=0.316 Sum_probs=186.8
Q ss_pred cccccCCCC-cccccceEEEEcCCCEEEEECCcCCC-----CCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE-E
Q 009435 21 SSEISSSGP-GKRWGHTCNAIKGGRFLYVFGGYGKD-----NCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-V 93 (535)
Q Consensus 21 ~~~~~g~~P-~~R~gh~~~~v~~~~~Iyi~GG~~~~-----~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~ 93 (535)
|..++ ++| .+|.+|+++++ +++|||+||.... ...++++|+||+.+++|..++. ..|.+|.+|++++ .
T Consensus 64 W~~l~-~~p~~~r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~ 138 (376)
T PRK14131 64 WTKIA-AFPGGPREQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLH 138 (376)
T ss_pred eEECC-cCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEee
Confidence 34443 334 48999998888 6689999998641 1246789999999999999762 3577788888777 7
Q ss_pred CCEEEEEcCCCCC----------------------------------CCCCcEEEEECCCCeEEeccccCCCCC-CCCCe
Q 009435 94 GENLYVFGGTDGM----------------------------------NPLRDLHILDTSSHTWISPSVRGEGPE-AREGH 138 (535)
Q Consensus 94 ~~~Iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~h 138 (535)
+++||++||.+.. ...+++++||+.+++|+.+. ++|. +|.+|
T Consensus 139 ~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~ 215 (376)
T PRK14131 139 NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGS 215 (376)
T ss_pred CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcc
Confidence 9999999997531 12478999999999999876 6775 78899
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCceeeeeEE--EEECCCccEEEeccCCCCCCCCC--------ceeEEeeCCEEEEEec
Q 009435 139 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLY--ILNTETFVWKRATTSGNPPSARD--------SHTCSSWKNKIIVIGG 208 (535)
Q Consensus 139 s~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~--~yd~~t~~W~~~~~~~~~p~~r~--------~~s~~~~~~~lyv~GG 208 (535)
+++.++++|||+||..... ....+++ .||+++++|..+. ++|.+|. .+.+++++++|||+||
T Consensus 216 a~v~~~~~iYv~GG~~~~~-----~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 216 AVVIKGNKLWLINGEIKPG-----LRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred eEEEECCEEEEEeeeECCC-----cCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeec
Confidence 9999999999999964321 1234444 5577899999988 4444442 2335678999999999
Q ss_pred CCCCCc----------------ccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEE
Q 009435 209 EDGHDY----------------YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 209 ~~~~~~----------------~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
.+.... ....+++||+++++|+.+.. +|.+|..++++.++++|||+||........+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~ 364 (376)
T PRK14131 288 ANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTL 364 (376)
T ss_pred cCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCc---CCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEE
Confidence 763210 01246789999999998875 88999999999999999999998766677899999
Q ss_pred EecCCCcEEE
Q 009435 273 IDVDSGLWTK 282 (535)
Q Consensus 273 yd~~~~~W~~ 282 (535)
|+++++.|+.
T Consensus 365 ~~~~~~~~~~ 374 (376)
T PRK14131 365 LSWDGKKLTV 374 (376)
T ss_pred EEEcCCEEEE
Confidence 9999887764
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=8.7e-28 Score=258.41 Aligned_cols=211 Identities=19% Similarity=0.235 Sum_probs=181.4
Q ss_pred EEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 90 CTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 90 ~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
++.+++.||++||.++....+.+++||+.+++|..++ +++.+|..++++.++++||++||... .+.++
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~---------~~sve 334 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN---------PTSVE 334 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC---------CCceE
Confidence 3458999999999977777889999999999999988 78999999999999999999999631 15689
Q ss_pred EEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE
Q 009435 170 ILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (535)
Q Consensus 170 ~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~ 249 (535)
+||+.+++|..++ ++|.+|..|++++++++||++||.+.. .+.+++|||.+++|+.+++ ++.+|.+|+++.
T Consensus 335 ~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~r~~~~~~~ 405 (480)
T PHA02790 335 RWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYPHYKSCALV 405 (480)
T ss_pred EEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCccccceEEE
Confidence 9999999999987 678999999999999999999998643 3678999999999999877 888999999999
Q ss_pred ECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEe
Q 009435 250 FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 329 (535)
Q Consensus 250 ~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~ 329 (535)
++++|||+||. +.+||+++++|+.++++ |.+|..+.++++ +++||++||.+.. ..++.+..+|
T Consensus 406 ~~~~IYv~GG~---------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~----~~~IYviGG~~~~-~~~~~ve~Yd 468 (480)
T PHA02790 406 FGRRLFLVGRN---------AEFYCESSNTWTLIDDP---IYPRDNPELIIV----DNKLLLIGGFYRG-SYIDTIEVYN 468 (480)
T ss_pred ECCEEEEECCc---------eEEecCCCCcEeEcCCC---CCCccccEEEEE----CCEEEEECCcCCC-cccceEEEEE
Confidence 99999999984 57899999999998766 667877776655 8999999998743 3457788888
Q ss_pred ccccccccc
Q 009435 330 TGLVNERKL 338 (535)
Q Consensus 330 ~~~~~~~~~ 338 (535)
....+|..+
T Consensus 469 ~~~~~W~~~ 477 (480)
T PHA02790 469 NRTYSWNIW 477 (480)
T ss_pred CCCCeEEec
Confidence 887777543
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.7e-28 Score=245.67 Aligned_cols=258 Identities=28% Similarity=0.534 Sum_probs=216.0
Q ss_pred CCeEEEee-ccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEE
Q 009435 69 NQTWSQPV-IKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRL 147 (535)
Q Consensus 69 t~~W~~l~-~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~l 147 (535)
.-.|+.+. ..|+.|.||.+|-++++..-|.||||-+ .+..+++++||..+++|....+.|+.|.+...|..+-.+.+|
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtri 94 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRI 94 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceE
Confidence 34788765 3678899999999999999999999954 345689999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec----cCCCCCCCCCceeEEeeCCEEEEEecCCCC--------Ccc
Q 009435 148 FIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT----TSGNPPSARDSHTCSSWKNKIIVIGGEDGH--------DYY 215 (535)
Q Consensus 148 yv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~----~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~--------~~~ 215 (535)
|+|||+.+ -..|.||+|.+...-..|+++. ..|.+|.||.+|+.+.++++-|+|||...+ -.+
T Consensus 95 lvFGGMvE-----YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 95 LVFGGMVE-----YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred EEEccEee-----eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchh
Confidence 99999743 3457899998888888899885 457789999999999999999999997432 247
Q ss_pred cCceEEEECCCC----cEEEeecCCCCCCCceeeEEEEE------CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 216 LSDVHILDTDTL----TWKELNTSGMVLSPRAGHSTVAF------GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 216 ~~~i~~yd~~t~----~W~~v~~~g~~p~~R~~hs~v~~------~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
+||+|++++.-+ .|......|..|.+|..|+++.+ ..++||+||.+. -.+.|+|.+|+++.+|.+...
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSL 247 (830)
T ss_pred hcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecceeecccccc
Confidence 899999998643 59999999999999999999987 246999999874 358999999999999999999
Q ss_pred CCCCCCCceeeeeeeecccCCCEEEEEcccCC-------------CCCccCcEEEEeccccccccc
Q 009435 286 TGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK-------------SLEALDDMYYLYTGLVNERKL 338 (535)
Q Consensus 286 ~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~-------------~~~~~~dv~~l~~~~~~~~~~ 338 (535)
.+..|.+|..|++..+ ++++|||||.-. +.+..+.+-++++++..|..+
T Consensus 248 ~G~~PlPRSLHsa~~I----GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 248 SGVAPLPRSLHSATTI----GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred cCCCCCCcccccceee----cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 9999999999998765 899999999732 223344445666666676655
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=8.2e-17 Score=158.23 Aligned_cols=280 Identities=21% Similarity=0.310 Sum_probs=201.6
Q ss_pred CcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCC--CeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCC
Q 009435 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM 106 (535)
Q Consensus 29 P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~ 106 (535)
|.+--+-+...+ ++.+||-=|... ...|.+|+.. ..|+++.. -+-.+|....+++++++||+|||....
T Consensus 34 Pvg~KnG~Ga~i--g~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~ 104 (381)
T COG3055 34 PVGFKNGAGALI--GDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKS 104 (381)
T ss_pred Ccccccccccee--cceEEEEeccCC-----ccceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccC
Confidence 444444466666 557888655221 4678888765 58999762 334579999999999999999998543
Q ss_pred C-----CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCC---------------------
Q 009435 107 N-----PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNT--------------------- 159 (535)
Q Consensus 107 ~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~--------------------- 159 (535)
. .++++|+||+.+++|.++.+. .|....+++++.+++ +||++||+.+....
T Consensus 105 ~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~ 182 (381)
T COG3055 105 VSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA 182 (381)
T ss_pred CCCCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH
Confidence 3 469999999999999999874 455588899999987 89999998543110
Q ss_pred -------CCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECC--CCcEE
Q 009435 160 -------NDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTD--TLTWK 230 (535)
Q Consensus 160 -------~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~ 230 (535)
.+..+...+..|++.+++|+.+... +-.++++.+++.-+|++.++-|+--.+-+...+++++.. ..+|.
T Consensus 183 ~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~ 260 (381)
T COG3055 183 HYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWL 260 (381)
T ss_pred HHhCCCHHHhcccccccccccccchhhhcCcC--cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeee
Confidence 0123356789999999999998632 345666666666688899999986665566677777764 66899
Q ss_pred EeecCCC----CCCCceeeEEEEECCEEEEEeccCCC------------------CCccCcEEEEecCCCcEEEEeeCCC
Q 009435 231 ELNTSGM----VLSPRAGHSTVAFGKNLFVFGGFTDS------------------QNLYDDLYMIDVDSGLWTKVITTGE 288 (535)
Q Consensus 231 ~v~~~g~----~p~~R~~hs~v~~~~~iyv~GG~~~~------------------~~~~~dv~~yd~~~~~W~~l~~~~~ 288 (535)
.+...+. .....+++-.-..++.++|.||..-. ..+.++||.|| .+.|+.+..+
T Consensus 261 ~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL-- 336 (381)
T COG3055 261 KLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL-- 336 (381)
T ss_pred eccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc--
Confidence 9865211 11233444445667889999986421 23678899999 8999999776
Q ss_pred CCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEec
Q 009435 289 GPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 330 (535)
Q Consensus 289 ~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~ 330 (535)
|.++..-++. ..++.||++||.+..+.++.+++.+..
T Consensus 337 -p~~l~YG~s~----~~nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 337 -PQGLAYGVSL----SYNNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred -CCCccceEEE----ecCCcEEEEccccCCCeeeeeEEEEEE
Confidence 4454443332 358999999999999999999988764
No 28
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-19 Score=183.07 Aligned_cols=298 Identities=21% Similarity=0.330 Sum_probs=213.4
Q ss_pred CCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECC--EEEEEcCCC
Q 009435 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE--NLYVFGGTD 104 (535)
Q Consensus 27 ~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~--~Iyv~GG~~ 104 (535)
..|..|.||.+|.....++||++||+++-. .+.++|.|+...+.|..+...+..|..|..|-++.... |+|+.|-+-
T Consensus 256 ~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~ 334 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYL 334 (723)
T ss_pred cCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcc
Confidence 479999999999998888999999998765 67899999999999999987788999999999998866 899999874
Q ss_pred CC------CCCCcEEEEECCCCeEEeccccCC---CCCCCCCeEEEEECCE--EEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 105 GM------NPLRDLHILDTSSHTWISPSVRGE---GPEAREGHSAALVGKR--LFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 105 ~~------~~~~~~~~yd~~t~~W~~~~~~g~---~p~~r~~hs~~~~~~~--lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
+. +.-.|+|+||..++.|..+..... .|...+.|.|++.+++ +|||||+.- ..++..+..+|.||.
T Consensus 335 ~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~---~~~e~~f~GLYaf~~ 411 (723)
T KOG2437|consen 335 DSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL---TCNEPQFSGLYAFNC 411 (723)
T ss_pred ccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec---cCCCccccceEEEec
Confidence 43 234799999999999998765432 6888999999999988 999999743 223345788999999
Q ss_pred CCccEEEeccCC-------CCCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeec-----CCCCC
Q 009435 174 ETFVWKRATTSG-------NPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT-----SGMVL 239 (535)
Q Consensus 174 ~t~~W~~~~~~~-------~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~-----~g~~p 239 (535)
....|..+...- .-...|.+|+|-.+ ++++|++||..... -++-.+.||+....-..+.. ....|
T Consensus 412 ~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-El~L~f~y~I~~E~~~~~s~~~k~dsS~~p 490 (723)
T KOG2437|consen 412 QCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-ELNLFFSYDIDSEHVDIISDGTKKDSSMVP 490 (723)
T ss_pred CCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-EEeehhcceeccccchhhhccCcCccccCC
Confidence 999998764211 12356777877665 67899999976543 34556667665433222221 11112
Q ss_pred CCceeeEEEE---ECCEEEEEeccCCC-----CCccCcEEEEecCCCcEEEEeeC---------------------CCCC
Q 009435 240 SPRAGHSTVA---FGKNLFVFGGFTDS-----QNLYDDLYMIDVDSGLWTKVITT---------------------GEGP 290 (535)
Q Consensus 240 ~~R~~hs~v~---~~~~iyv~GG~~~~-----~~~~~dv~~yd~~~~~W~~l~~~---------------------~~~p 290 (535)
.+ ....-+. -...|.+.-|.+.. ....+.+|+|++.++.|..+... -..+
T Consensus 491 S~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~ 569 (723)
T KOG2437|consen 491 ST-GFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEP 569 (723)
T ss_pred Cc-chhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceec
Confidence 11 1111112 23567777776532 33678999999999999865211 0237
Q ss_pred CCceeeeeeeecccCCCEEEEEcccCCCC----CccCcEEEEeccc
Q 009435 291 SARFSVAGDCLDPLKGGVLVFIGGCNKSL----EALDDMYYLYTGL 332 (535)
Q Consensus 291 ~~r~~~~~~~~~~~~~~~l~v~GG~~~~~----~~~~dv~~l~~~~ 332 (535)
.+|+.|+.+. ......+|.+||..... ..+.|.|.++.-.
T Consensus 570 ~~rf~h~~~~--dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~r 613 (723)
T KOG2437|consen 570 CPRFAHQLVY--DLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKICR 613 (723)
T ss_pred cccchhHHHH--HHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhcc
Confidence 7888887443 25567789999975442 3467888777653
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=7.2e-15 Score=144.68 Aligned_cols=244 Identities=20% Similarity=0.322 Sum_probs=175.0
Q ss_pred ccccccCCCCcccccceEEEEcCCCEEEEECCcCCCCC----CcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECC
Q 009435 20 VSSEISSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNC----QTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE 95 (535)
Q Consensus 20 ~~~~~~g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~----~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 95 (535)
.|.++..=+=.+|-+..++++ +++||+|||.+.... ..+++|+||+.+++|.++.+ ..|....+++++.+++
T Consensus 71 ~W~~~a~FpG~~rnqa~~a~~--~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~ 146 (381)
T COG3055 71 GWTKIADFPGGARNQAVAAVI--GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNG 146 (381)
T ss_pred CceEcccCCCcccccchheee--CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCC
Confidence 444443323337777777777 668999999966543 47889999999999999875 5677788999999988
Q ss_pred -EEEEEcCCCCCC----------------------------------CCCcEEEEECCCCeEEeccccCCCCCCCCCeEE
Q 009435 96 -NLYVFGGTDGMN----------------------------------PLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (535)
Q Consensus 96 -~Iyv~GG~~~~~----------------------------------~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~ 140 (535)
+||++||.+... ...+++.||+.+++|+.+-. .+-.++++.+.
T Consensus 147 ~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~ 224 (381)
T COG3055 147 TKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAV 224 (381)
T ss_pred ceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcce
Confidence 899999974210 13678999999999986542 33467777666
Q ss_pred EEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC--CCccEEEeccCCCCC----CCCCceeEEeeCCEEEEEecCCC---
Q 009435 141 ALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT--ETFVWKRATTSGNPP----SARDSHTCSSWKNKIIVIGGEDG--- 211 (535)
Q Consensus 141 ~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~--~t~~W~~~~~~~~~p----~~r~~~s~~~~~~~lyv~GG~~~--- 211 (535)
+.-++++.++-|.-+... .+..+.+++. ...+|.++.....+. ....++-.-..++.++|.||.+-
T Consensus 225 ~~~~n~~~lInGEiKpGL-----Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga 299 (381)
T COG3055 225 VIKGNKLTLINGEIKPGL-----RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGA 299 (381)
T ss_pred eecCCeEEEEcceecCCc-----cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhH
Confidence 666778999999755443 3444555555 456899986432111 11112222234788999999642
Q ss_pred ---------------CCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecC
Q 009435 212 ---------------HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (535)
Q Consensus 212 ---------------~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (535)
...+.++|+.|| .+.|+.+.. +|.++.+..++..++.+|++||.+..+.....++.+-..
T Consensus 300 ~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~Ge---Lp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 300 LKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGE---LPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred HHHHHhcccccccchhhhhhceEEEEc--CCceeeecc---cCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEc
Confidence 123567899998 889999875 889999999999999999999999888877777777655
Q ss_pred CCc
Q 009435 277 SGL 279 (535)
Q Consensus 277 ~~~ 279 (535)
.++
T Consensus 375 gk~ 377 (381)
T COG3055 375 GKK 377 (381)
T ss_pred Cce
Confidence 443
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-15 Score=153.78 Aligned_cols=271 Identities=21% Similarity=0.314 Sum_probs=193.6
Q ss_pred CCeEEEeeccC-------CCCCCCCceEEEEECC--EEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE
Q 009435 69 NQTWSQPVIKG-------SPPTPRDSHSCTTVGE--NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 69 t~~W~~l~~~g-------~~P~~R~~hs~~~~~~--~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (535)
+..|.++.... .-|..|.+|-++...+ .||++||+++...+.|+|.|+...+.|......+..|..|..|-
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 45787765332 3578899999999865 89999999999999999999999999998887777999999999
Q ss_pred EEEECC--EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC---CCCCCCCceeEEeeCCE--EEEEecCCCC
Q 009435 140 AALVGK--RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG---NPPSARDSHTCSSWKNK--IIVIGGEDGH 212 (535)
Q Consensus 140 ~~~~~~--~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~---~~p~~r~~~s~~~~~~~--lyv~GG~~~~ 212 (535)
|+..-. +||+.|-+-.++..+......|+|+||..++.|..++... -.|...+.|.|++.+++ +||+||..-.
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence 998765 8999999877766666667789999999999999986432 34778899999999877 9999998543
Q ss_pred --CcccCceEEEECCCCcEEEeecCC-------CCCCCceeeEEEEE--CCEEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 213 --DYYLSDVHILDTDTLTWKELNTSG-------MVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 213 --~~~~~~i~~yd~~t~~W~~v~~~g-------~~p~~R~~hs~v~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
...+..++.||+....|..+...- .....|.+|++-.. +..+|++||..... -++-...||+....-.
T Consensus 398 ~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-El~L~f~y~I~~E~~~ 476 (723)
T KOG2437|consen 398 CNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-ELNLFFSYDIDSEHVD 476 (723)
T ss_pred CCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-EEeehhcceeccccch
Confidence 235678999999999999875411 01125777776444 56799999976532 2444556665544322
Q ss_pred EEe-----eCCCCCCCceeeeeeeecccCCCEEEEEcccCCC-----CCccCcEEEEeccccccccccchh
Q 009435 282 KVI-----TTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS-----LEALDDMYYLYTGLVNERKLEKLS 342 (535)
Q Consensus 282 ~l~-----~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~-----~~~~~dv~~l~~~~~~~~~~~~l~ 342 (535)
.+. .....|++.+..- .........|.+.-|.... .+..+..|.++.....|..+.++.
T Consensus 477 ~~s~~~k~dsS~~pS~~f~qR--s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~ 545 (723)
T KOG2437|consen 477 IISDGTKKDSSMVPSTGFTQR--ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKID 545 (723)
T ss_pred hhhccCcCccccCCCcchhhh--cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhH
Confidence 221 1112233222222 1223455667776666432 345678899988877776554433
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.07 E-value=3.7e-10 Score=82.36 Aligned_cols=49 Identities=37% Similarity=0.622 Sum_probs=45.5
Q ss_pred CCCceEEEEECCEEEEEcCCCC-CCCCCcEEEEECCCCeEEeccccCCCCCCC
Q 009435 84 PRDSHSCTTVGENLYVFGGTDG-MNPLRDLHILDTSSHTWISPSVRGEGPEAR 135 (535)
Q Consensus 84 ~R~~hs~~~~~~~Iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 135 (535)
||.+|++++++++|||+||... ...++++++||+.|++|++++ ++|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 6899999999999999999988 678999999999999999988 788887
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.99 E-value=1.1e-09 Score=79.77 Aligned_cols=50 Identities=40% Similarity=0.790 Sum_probs=44.6
Q ss_pred ccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCC
Q 009435 31 KRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPR 85 (535)
Q Consensus 31 ~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R 85 (535)
||.+|+++++ +++|||+||........+++++||+.+++|++++ +||.||
T Consensus 1 pR~~~s~v~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV--GGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEE--CCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 6899999999 6699999999875667899999999999999976 888887
No 33
>PLN02772 guanylate kinase
Probab=98.94 E-value=5.9e-09 Score=107.05 Aligned_cols=92 Identities=21% Similarity=0.394 Sum_probs=79.1
Q ss_pred cCCCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCC
Q 009435 25 SSSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGT 103 (535)
Q Consensus 25 ~g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~ 103 (535)
.|-.+.+|.+|+++++ ++++|||||.+......+.+++||+.+++|..+.+.|..|.||.+|+++.+ +++|+|+++.
T Consensus 18 ~~~~~~~~~~~tav~i--gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 18 NGFGVKPKNRETSVTI--GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred cCccCCCCCcceeEEE--CCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 3445679999999999 679999999877654678999999999999999999999999999999999 5899999986
Q ss_pred CCCCCCCcEEEEECCCC
Q 009435 104 DGMNPLRDLHILDTSSH 120 (535)
Q Consensus 104 ~~~~~~~~~~~yd~~t~ 120 (535)
... -+++|.+...|.
T Consensus 96 ~~~--~~~~w~l~~~t~ 110 (398)
T PLN02772 96 SAP--DDSIWFLEVDTP 110 (398)
T ss_pred CCC--ccceEEEEcCCH
Confidence 544 378999988763
No 34
>PLN02772 guanylate kinase
Probab=98.91 E-value=8.2e-09 Score=105.99 Aligned_cols=89 Identities=27% Similarity=0.540 Sum_probs=76.6
Q ss_pred CCCCCCCceEEEEECCEEEEEcCCCCCC-CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEEC-CEEEEEcCCCCCC
Q 009435 80 SPPTPRDSHSCTTVGENLYVFGGTDGMN-PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSS 157 (535)
Q Consensus 80 ~~P~~R~~hs~~~~~~~Iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~ 157 (535)
--+.++..|+++.+++++|||||.++.. ..+.+++||..|++|..+.+.|..|.||.+|++++++ ++|+|+++....
T Consensus 20 ~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~- 98 (398)
T PLN02772 20 FGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP- 98 (398)
T ss_pred ccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-
Confidence 3456899999999999999999987765 6789999999999999999999999999999999995 789999875321
Q ss_pred CCCCceeeeeEEEEECCCc
Q 009435 158 NTNDEVYYNDLYILNTETF 176 (535)
Q Consensus 158 ~~~~~~~~n~v~~yd~~t~ 176 (535)
..++|.+.+.|.
T Consensus 99 -------~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -------DDSIWFLEVDTP 110 (398)
T ss_pred -------ccceEEEEcCCH
Confidence 367888887764
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.85 E-value=6.9e-09 Score=75.25 Aligned_cols=47 Identities=43% Similarity=0.875 Sum_probs=42.2
Q ss_pred CCEEEEEcCCC--CCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE
Q 009435 94 GENLYVFGGTD--GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV 143 (535)
Q Consensus 94 ~~~Iyv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~ 143 (535)
+++||||||.+ ....++++|+||+.+++|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 58999999998 566889999999999999988 489999999999874
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.80 E-value=1.3e-08 Score=73.84 Aligned_cols=48 Identities=44% Similarity=0.857 Sum_probs=42.1
Q ss_pred CCEEEEECCcC-CCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE
Q 009435 43 GRFLYVFGGYG-KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV 93 (535)
Q Consensus 43 ~~~Iyi~GG~~-~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~ 93 (535)
|++||||||++ ......+++|+||+.+++|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 46899999998 4556789999999999999997 689999999999874
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.68 E-value=5.3e-08 Score=70.56 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=39.5
Q ss_pred CCCceEEEEECCEEEEEcCC---CCCCCCCcEEEEECCCCeEEeccc
Q 009435 84 PRDSHSCTTVGENLYVFGGT---DGMNPLRDLHILDTSSHTWISPSV 127 (535)
Q Consensus 84 ~R~~hs~~~~~~~Iyv~GG~---~~~~~~~~~~~yd~~t~~W~~~~~ 127 (535)
||.+|++++++++||||||. ......+++++||+.+++|+.++.
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 445678999999999999998773
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.68 E-value=4.4e-08 Score=70.20 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=42.4
Q ss_pred CceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeC
Q 009435 241 PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 241 ~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
||.+|+++.++++|||+||........+++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6899999999999999999988777899999999999999999876
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.68 E-value=1.7e-08 Score=72.38 Aligned_cols=43 Identities=35% Similarity=0.783 Sum_probs=39.8
Q ss_pred CCCceEEEEECCEEEEEcCCCC-CCCCCcEEEEECCCCeEEecc
Q 009435 84 PRDSHSCTTVGENLYVFGGTDG-MNPLRDLHILDTSSHTWISPS 126 (535)
Q Consensus 84 ~R~~hs~~~~~~~Iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~ 126 (535)
||.+|+++.++++|||+||.+. ...++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 6899999999999999999988 678899999999999999887
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.67 E-value=2.1e-08 Score=72.61 Aligned_cols=48 Identities=33% Similarity=0.670 Sum_probs=31.2
Q ss_pred ccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCC
Q 009435 31 KRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPP 82 (535)
Q Consensus 31 ~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P 82 (535)
||.+|+++.+.+ +.||||||.+......+++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~-~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGD-NSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-T-TEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeC-CeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 699999999954 479999999887678899999999999999973 555
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.67 E-value=4.9e-08 Score=70.76 Aligned_cols=46 Identities=30% Similarity=0.771 Sum_probs=41.0
Q ss_pred CceeeEEEEECCEEEEEecc--CCCCCccCcEEEEecCCCcEEEEeeC
Q 009435 241 PRAGHSTVAFGKNLFVFGGF--TDSQNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 241 ~R~~hs~v~~~~~iyv~GG~--~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
||.+|+++.++++|||+||+ .......+++++||+++++|+.+..+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 44456789999999999999998765
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.66 E-value=2.4e-08 Score=72.31 Aligned_cols=46 Identities=35% Similarity=0.801 Sum_probs=31.7
Q ss_pred CceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeC
Q 009435 241 PRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 241 ~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
||.+|+++.+ +++||||||.......++++|+||+++++|+++..+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 6999999998 489999999988777899999999999999999543
No 43
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.63 E-value=5.5e-06 Score=79.99 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCC-CCCcEEEEECCCC--------eEEeccccCCCCCCCCCeEEEEEC--C--EEEEEcCCCCCC-----
Q 009435 96 NLYVFGGTDGMN-PLRDLHILDTSSH--------TWISPSVRGEGPEAREGHSAALVG--K--RLFIFGGCGKSS----- 157 (535)
Q Consensus 96 ~Iyv~GG~~~~~-~~~~~~~yd~~t~--------~W~~~~~~g~~p~~r~~hs~~~~~--~--~lyv~GG~~~~~----- 157 (535)
..+|.||.+.++ -.+.+|++...+. ...+.+..|++|.+|++|++.++. + -..+|||+.--.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 367789987665 4578898877543 245556678999999999987773 2 388999974221
Q ss_pred ---CCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCC-CcccCceEEEECCCCc---EE
Q 009435 158 ---NTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTLT---WK 230 (535)
Q Consensus 158 ---~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~-~~~~~~i~~yd~~t~~---W~ 230 (535)
++.-..+...|+.+|++.+-.+.-... .+......|.+...++.+|++||..-. +.....++++..+--. +.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 111123345688889988776655422 455667788888889999999997533 2233446655432110 11
Q ss_pred EeecCCCCCCCceeeEEEEE---CCEEEEEeccCCC
Q 009435 231 ELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDS 263 (535)
Q Consensus 231 ~v~~~g~~p~~R~~hs~v~~---~~~iyv~GG~~~~ 263 (535)
.... +.....-.++++. .+..+|+||+..+
T Consensus 199 sC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 199 SCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 1111 2333443444332 3679999999754
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.51 E-value=2.2e-07 Score=64.94 Aligned_cols=40 Identities=45% Similarity=0.768 Sum_probs=35.8
Q ss_pred CCCCCCceEEEEECCEEEEEcCCCC--CCCCCcEEEEECCCC
Q 009435 81 PPTPRDSHSCTTVGENLYVFGGTDG--MNPLRDLHILDTSSH 120 (535)
Q Consensus 81 ~P~~R~~hs~~~~~~~Iyv~GG~~~--~~~~~~~~~yd~~t~ 120 (535)
+|.+|.+|+++.++++|||+||.+. ...++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 568899999998763
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.46 E-value=3.6e-07 Score=63.88 Aligned_cols=40 Identities=43% Similarity=0.940 Sum_probs=36.2
Q ss_pred CCCCceeeEEEEECCEEEEEeccCC-CCCccCcEEEEecCC
Q 009435 238 VLSPRAGHSTVAFGKNLFVFGGFTD-SQNLYDDLYMIDVDS 277 (535)
Q Consensus 238 ~p~~R~~hs~v~~~~~iyv~GG~~~-~~~~~~dv~~yd~~~ 277 (535)
+|.+|.+|+++.++++|||+||... ....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 677899999999876
No 46
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.45 E-value=7.5e-05 Score=72.34 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCCCCCCceeeeeEEEEECCCcc--------EEEeccCCCCCCCCCceeEEee----CCEEEEEecCCCC-
Q 009435 146 RLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--------WKRATTSGNPPSARDSHTCSSW----KNKIIVIGGEDGH- 212 (535)
Q Consensus 146 ~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~--------W~~~~~~~~~p~~r~~~s~~~~----~~~lyv~GG~~~~- 212 (535)
..+|.||++ .+......+|++...+.. ..+....|+.|.+|++|++.++ +...++|||..--
T Consensus 40 ~YlIHGGrT-----PNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P 114 (337)
T PF03089_consen 40 QYLIHGGRT-----PNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMP 114 (337)
T ss_pred eEEecCCcC-----CCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCC
Confidence 355668864 344566778888765433 3333456889999999998877 2347889996421
Q ss_pred ------------CcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCC-ccCcEEEEecCC--
Q 009435 213 ------------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN-LYDDLYMIDVDS-- 277 (535)
Q Consensus 213 ------------~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~-~~~dv~~yd~~~-- 277 (535)
-.+...++.+|++-+..+.-.. +++....+.|.+..-+|.+|++||..-..+ ....++++.++-
T Consensus 115 ~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLll 193 (337)
T PF03089_consen 115 PGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLL 193 (337)
T ss_pred ccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecC
Confidence 0123457888888777665432 224557788999999999999999864322 234566654431
Q ss_pred -CcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCC
Q 009435 278 -GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL 319 (535)
Q Consensus 278 -~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~ 319 (535)
.-+...... ....+.+++.++.......+|+||+....
T Consensus 194 GSP~vsC~vl----~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 194 GSPAVSCTVL----QGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred CCceeEEEEC----CCCceEeeeeEeecCCCceEEEecccccc
Confidence 112222222 12334444455555668899999997653
No 47
>smart00612 Kelch Kelch domain.
Probab=98.41 E-value=4.2e-07 Score=64.62 Aligned_cols=47 Identities=30% Similarity=0.674 Sum_probs=41.7
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC
Q 009435 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK 145 (535)
Q Consensus 96 ~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~ 145 (535)
+||++||..+...++++++||+.+++|+..+ ++|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999977677899999999999999877 8999999999988764
No 48
>smart00612 Kelch Kelch domain.
Probab=98.23 E-value=1.8e-06 Score=61.36 Aligned_cols=47 Identities=30% Similarity=0.622 Sum_probs=40.0
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECC
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE 95 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 95 (535)
+|||+||.... ...+++++||+.+++|..++ ++|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 38999998653 46788999999999999865 8999999999988764
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.17 E-value=0.00011 Score=71.56 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=97.3
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCC----ccEEEeccCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET----FVWKRATTSG 185 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t----~~W~~~~~~~ 185 (535)
..-..||+.+++++.+.+..+.- +...+..-++++++.||... -...+-.|++.+ ..|.+...
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~F---CSgg~~L~dG~ll~tGG~~~--------G~~~ir~~~p~~~~~~~~w~e~~~-- 112 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTF---CSGGAFLPDGRLLQTGGDND--------GNKAIRIFTPCTSDGTCDWTESPN-- 112 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCc---ccCcCCCCCCCEEEeCCCCc--------cccceEEEecCCCCCCCCceECcc--
Confidence 34578999999999877532221 11223445789999999632 124456677654 67887753
Q ss_pred CCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECC-C-----CcEEEeecC-CCCCCCceeeEEEEECCEEEEE
Q 009435 186 NPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-T-----LTWKELNTS-GMVLSPRAGHSTVAFGKNLFVF 257 (535)
Q Consensus 186 ~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~-t-----~~W~~v~~~-g~~p~~R~~hs~v~~~~~iyv~ 257 (535)
.+..+|...++..+ +++++|+||.... .+.|-++ . ..|..+... ...+...+=+..+.-+++||++
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE
Confidence 37889999998888 7899999998632 2233232 1 123222211 1123334445566678999999
Q ss_pred eccCCCCCccCcEEEEecCCCcE-EEEeeCCCC
Q 009435 258 GGFTDSQNLYDDLYMIDVDSGLW-TKVITTGEG 289 (535)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~W-~~l~~~~~~ 289 (535)
+... -.+||..++++ +.++..+..
T Consensus 187 an~~--------s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 187 ANRG--------SIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EcCC--------cEEEeCCCCeEEeeCCCCCCC
Confidence 9853 57899999976 666665543
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.09 E-value=0.0011 Score=64.54 Aligned_cols=199 Identities=12% Similarity=0.134 Sum_probs=113.3
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCC-CCce-EEEEECC-----EEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTP-RDSH-SCTTVGE-----NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGP 132 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~-R~~h-s~~~~~~-----~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 132 (535)
..++++||.|.+|..++.. +.+.. ...+ .....+. ||..+...........+++|+..+++|+..... .+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~--~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTP-KSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS--PP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCC-CCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--CC
Confidence 4689999999999998621 11101 1111 1112221 455554322222345789999999999987632 12
Q ss_pred CCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE-eccCCCCCCCC----CceeEEeeCCEEEEEe
Q 009435 133 EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSAR----DSHTCSSWKNKIIVIG 207 (535)
Q Consensus 133 ~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~-~~~~~~~p~~r----~~~s~~~~~~~lyv~G 207 (535)
........+.+++.||-+.-.... .....+..||+.+.+|.. ++ +|..+ ....++.++++|.++.
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~------~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKT------NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCC------CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEE
Confidence 111222367789999888652110 111369999999999995 54 23222 2345666789988876
Q ss_pred cCCCCCcccCceEEEE-CCCCcEEEeecCCCCCCCce----eeEEEEECCEEEEEeccCCCCCccC-cEEEEecCCC
Q 009435 208 GEDGHDYYLSDVHILD-TDTLTWKELNTSGMVLSPRA----GHSTVAFGKNLFVFGGFTDSQNLYD-DLYMIDVDSG 278 (535)
Q Consensus 208 G~~~~~~~~~~i~~yd-~~t~~W~~v~~~g~~p~~R~----~hs~v~~~~~iyv~GG~~~~~~~~~-dv~~yd~~~~ 278 (535)
...... .-+||+++ -....|++.-.....+.+.. ....+..+++|++..... .. -+..||+.++
T Consensus 161 ~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-----~~~~~~~y~~~~~ 230 (230)
T TIGR01640 161 QKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-----NPFYIFYYNVGEN 230 (230)
T ss_pred ecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-----CceEEEEEeccCC
Confidence 543221 13677775 44567998655321112211 123455678888776521 11 2788888764
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.71 E-value=0.0085 Score=58.15 Aligned_cols=160 Identities=13% Similarity=0.130 Sum_probs=93.6
Q ss_pred CcEEEEECCCCeEEeccccCCCCCC---CCCe-EEEEEC----C-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEA---REGH-SAALVG----K-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~---r~~h-s~~~~~----~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~ 180 (535)
..++++||.|.+|..++. ++.+ ...+ ....++ . ++..+.... .......+++|+..++.|+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~------~~~~~~~~~Vys~~~~~Wr~ 84 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS------GNRNQSEHQVYTLGSNSWRT 84 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeec------CCCCCccEEEEEeCCCCccc
Confidence 579999999999998873 2211 1111 111111 1 344443311 00123568899999999999
Q ss_pred eccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEE-eecCCCCCCCc----eeeEEEEECCEEE
Q 009435 181 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTSGMVLSPR----AGHSTVAFGKNLF 255 (535)
Q Consensus 181 ~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-v~~~g~~p~~R----~~hs~v~~~~~iy 255 (535)
+... ++........+.+++.||-+.-..... ....|..||+.+.+|.. +.. |..+ ....++..+++|.
T Consensus 85 ~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~ 157 (230)
T TIGR01640 85 IECS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINYKGKLA 157 (230)
T ss_pred cccC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeec----CccccccccceEEEEECCEEE
Confidence 8732 121111222566799988876432211 11269999999999995 543 3322 2345667788888
Q ss_pred EEeccCCCCCccCcEEEEe-cCCCcEEEEeeCC
Q 009435 256 VFGGFTDSQNLYDDLYMID-VDSGLWTKVITTG 287 (535)
Q Consensus 256 v~GG~~~~~~~~~dv~~yd-~~~~~W~~l~~~~ 287 (535)
++....... .-+||+++ -.+..|+++-..+
T Consensus 158 ~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 158 VLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVP 188 (230)
T ss_pred EEEecCCCC--cEEEEEECCCCCCceeEEEEEc
Confidence 876543211 24688886 4456799876553
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.58 E-value=0.0019 Score=62.92 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=91.9
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCC----CeEEeccccCCCCCCCC
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS----HTWISPSVRGEGPEARE 136 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t----~~W~~~~~~g~~p~~r~ 136 (535)
.-..||+.+++++.+.+....- .+++ +..-++++++.||..+ ....+..|++.+ ..|.+... .|..+|.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~F--CSgg-~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTF--CSGG-AFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPN--DMQSGRW 119 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCc--ccCc-CCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence 4568999999999876322111 2222 2333789999999754 335677788765 57877552 4889999
Q ss_pred CeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECC------CccEEEeccC-CCCCCCCCceeEEeeCCEEEEEec
Q 009435 137 GHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE------TFVWKRATTS-GNPPSARDSHTCSSWKNKIIVIGG 208 (535)
Q Consensus 137 ~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~------t~~W~~~~~~-~~~p~~r~~~s~~~~~~~lyv~GG 208 (535)
..++..+ +++++|+||... ..+.|-+. ...|..+... ...+..-+-+....-+++||+++.
T Consensus 120 YpT~~~L~DG~vlIvGG~~~-----------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNN-----------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred cccceECCCCCEEEEeCcCC-----------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 9988777 579999999641 11222222 1122222211 122333334455555999999987
Q ss_pred CCCCCcccCceEEEECCCCcE-EEeec
Q 009435 209 EDGHDYYLSDVHILDTDTLTW-KELNT 234 (535)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~W-~~v~~ 234 (535)
. +-.+||..++++ +.++.
T Consensus 189 ~--------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 189 R--------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred C--------CcEEEeCCCCeEEeeCCC
Confidence 4 356789999977 55554
No 53
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.41 E-value=0.14 Score=49.38 Aligned_cols=179 Identities=21% Similarity=0.277 Sum_probs=103.0
Q ss_pred ceEEEEEcCCC--eEEEeeccCCCCCCCCceE--EEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccCCCCC
Q 009435 60 NQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHS--CTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPE 133 (535)
Q Consensus 60 ~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs--~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~ 133 (535)
..+.++|+.++ .|+.- +..+..+.. .+..++++|+..+ ...++++|..+++ |+... +.
T Consensus 3 g~l~~~d~~tG~~~W~~~-----~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~-----~~ 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD-----LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL-----PG 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEE-----CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC-----SS
T ss_pred CEEEEEECCCCCEEEEEE-----CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec-----cc
Confidence 35788888765 57762 211233333 3447889998843 4689999998875 76532 11
Q ss_pred CCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEE-EeccCCCCCCCCCceeEEeeCCEEEEEecCC
Q 009435 134 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGED 210 (535)
Q Consensus 134 ~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~-~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~ 210 (535)
+ ........++.+|+..+ .+.++++|..+. .|+ ........+ ........+.++.+|+...
T Consensus 67 ~-~~~~~~~~~~~v~v~~~------------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 130 (238)
T PF13360_consen 67 P-ISGAPVVDGGRVYVGTS------------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-- 130 (238)
T ss_dssp C-GGSGEEEETTEEEEEET------------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET--
T ss_pred c-ccceeeecccccccccc------------eeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec--
Confidence 1 11224777889988764 237899997765 588 343221111 2223344445777776653
Q ss_pred CCCcccCceEEEECCCCc--EEEeecCCCCCC-----CceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc--EE
Q 009435 211 GHDYYLSDVHILDTDTLT--WKELNTSGMVLS-----PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WT 281 (535)
Q Consensus 211 ~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~-----~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~ 281 (535)
...++.+|+++++ |..-...+.... .......+..++.+|+..+... +..+|.+++. |+
T Consensus 131 -----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 131 -----SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-------VVAVDLATGEKLWS 198 (238)
T ss_dssp -----CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-------EEEEETTTTEEEEE
T ss_pred -----cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-------EEEEECCCCCEEEE
Confidence 3469999998775 666432111001 1112344455678888776431 6667999986 73
Q ss_pred E
Q 009435 282 K 282 (535)
Q Consensus 282 ~ 282 (535)
.
T Consensus 199 ~ 199 (238)
T PF13360_consen 199 K 199 (238)
T ss_dssp E
T ss_pred e
Confidence 3
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.38 E-value=0.13 Score=54.17 Aligned_cols=194 Identities=15% Similarity=0.213 Sum_probs=108.1
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCC--C---CCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGS--P---PTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~--~---P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
+++||+.... ..+++||..++ .|+.-..... . +.++...+.+..+++||+.+. ...++++
T Consensus 69 ~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------~g~l~al 135 (394)
T PRK11138 69 YNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------KGQVYAL 135 (394)
T ss_pred CCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------CCEEEEE
Confidence 5578886542 36899998765 6886221100 0 011333445667889987542 2469999
Q ss_pred ECCCC--eEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc--EEEeccCCCCCCCC
Q 009435 116 DTSSH--TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSAR 191 (535)
Q Consensus 116 d~~t~--~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~--W~~~~~~~~~p~~r 191 (535)
|..|. .|+... +.+ ...+.++.++.+|+..+ ...++.+|+++.+ |+.-... +....+
T Consensus 136 d~~tG~~~W~~~~-----~~~-~~ssP~v~~~~v~v~~~------------~g~l~ald~~tG~~~W~~~~~~-~~~~~~ 196 (394)
T PRK11138 136 NAEDGEVAWQTKV-----AGE-ALSRPVVSDGLVLVHTS------------NGMLQALNESDGAVKWTVNLDV-PSLTLR 196 (394)
T ss_pred ECCCCCCcccccC-----CCc-eecCCEEECCEEEEECC------------CCEEEEEEccCCCEeeeecCCC-Cccccc
Confidence 99876 486532 111 12233556788887544 2468999998764 8775321 111112
Q ss_pred CceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecC--CCCCCCc---eeeEEEEECCEEEEEeccCCCC
Q 009435 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTS--GMVLSPR---AGHSTVAFGKNLFVFGGFTDSQ 264 (535)
Q Consensus 192 ~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~--g~~p~~R---~~hs~v~~~~~iyv~GG~~~~~ 264 (535)
...+-++.++.+|+..+ + ..++.+|+++.+ |+.-... +.....| ...+-+..++.+|+.+..
T Consensus 197 ~~~sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~---- 265 (394)
T PRK11138 197 GESAPATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN---- 265 (394)
T ss_pred CCCCCEEECCEEEEEcC-C------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC----
Confidence 22333445676666432 2 347888888764 8753210 0000001 123345678888876531
Q ss_pred CccCcEEEEecCCCc--EEE
Q 009435 265 NLYDDLYMIDVDSGL--WTK 282 (535)
Q Consensus 265 ~~~~dv~~yd~~~~~--W~~ 282 (535)
..++.+|+.+++ |+.
T Consensus 266 ---g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 266 ---GNLVALDLRSGQIVWKR 282 (394)
T ss_pred ---CeEEEEECCCCCEEEee
Confidence 348999998774 865
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.36 E-value=0.12 Score=49.67 Aligned_cols=185 Identities=23% Similarity=0.295 Sum_probs=106.2
Q ss_pred CCCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 009435 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (535)
Q Consensus 42 ~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t 119 (535)
+++.+|+..+ ...++++|..++ .|+. ..+. +.....+..++.||+..+ -+.++.+|..+
T Consensus 35 ~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~-----~~~~-~~~~~~~~~~~~v~v~~~------~~~l~~~d~~t 95 (238)
T PF13360_consen 35 DGGRVYVASG-------DGNLYALDAKTGKVLWRF-----DLPG-PISGAPVVDGGRVYVGTS------DGSLYALDAKT 95 (238)
T ss_dssp ETTEEEEEET-------TSEEEEEETTTSEEEEEE-----ECSS-CGGSGEEEETTEEEEEET------TSEEEEEETTT
T ss_pred eCCEEEEEcC-------CCEEEEEECCCCCEEEEe-----eccc-cccceeeecccccccccc------eeeeEecccCC
Confidence 3667888732 257999998776 5776 2222 222224777899988873 13799999877
Q ss_pred Ce--EEe-ccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCC-----
Q 009435 120 HT--WIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPS----- 189 (535)
Q Consensus 120 ~~--W~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~----- 189 (535)
.+ |+. .... +....+......+.++.+|+... ...++++|++++ .|+..........
T Consensus 96 G~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 96 GKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS------------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp SCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET------------CSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred cceeeeeccccc-cccccccccCceEecCEEEEEec------------cCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 64 873 3321 11112233344445677777653 356899999876 4776542111000
Q ss_pred CCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCcc
Q 009435 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 267 (535)
Q Consensus 190 ~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~ 267 (535)
.......+..++.+|+..+.. .+..+|.++++ |+.. ..+ ........++.+|+.. . .
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~~~~-~------~ 221 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLYVTS-S------D 221 (238)
T ss_dssp TTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-T------T
T ss_pred cccccceEEECCEEEEEcCCC-------eEEEEECCCCCEEEEec-CCC------ccCCceeeCCEEEEEe-C------C
Confidence 111233444467888876543 15667999987 7433 211 1222445567777766 2 2
Q ss_pred CcEEEEecCCCc
Q 009435 268 DDLYMIDVDSGL 279 (535)
Q Consensus 268 ~dv~~yd~~~~~ 279 (535)
..++++|+++++
T Consensus 222 ~~l~~~d~~tG~ 233 (238)
T PF13360_consen 222 GRLYALDLKTGK 233 (238)
T ss_dssp TEEEEEETTTTE
T ss_pred CEEEEEECCCCC
Confidence 459999999874
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.77 E-value=0.94 Score=47.69 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=98.8
Q ss_pred ceEEEEEcCCC--eEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEecccc--CCCCC
Q 009435 60 NQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVR--GEGPE 133 (535)
Q Consensus 60 ~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~--g~~p~ 133 (535)
..++.+|..++ .|+... ..+....+...+-+..++.+|+..+ ...++.+|..+.+ |+..... +....
T Consensus 170 g~l~ald~~tG~~~W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNL-DVPSLTLRGESAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred CEEEEEEccCCCEeeeecC-CCCcccccCCCCCEEECCEEEEEcC------CCEEEEEEccCChhhheeccccCCCccch
Confidence 46899998876 587632 1111111222344455777777543 2468889988764 7642110 00000
Q ss_pred ---CCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEec
Q 009435 134 ---AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (535)
Q Consensus 134 ---~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG 208 (535)
.....+-++.++.+|+.+. ...++++|+.+. .|+.-.. . . ...++.++.||+...
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~------------~g~l~ald~~tG~~~W~~~~~--~---~---~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAY------------NGNLVALDLRSGQIVWKREYG--S---V---NDFAVDGGRIYLVDQ 302 (394)
T ss_pred hcccccCCCcEEECCEEEEEEc------------CCeEEEEECCCCCEEEeecCC--C---c---cCcEEECCEEEEEcC
Confidence 0112344566888888654 245889999876 4876321 1 1 124556889998643
Q ss_pred CCCCCcccCceEEEECCCCc--EEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 209 EDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
...++.+|+++.+ |+.-.. ..+...+.+..++++|+.... ..++++|..+++
T Consensus 303 -------~g~l~ald~~tG~~~W~~~~~-----~~~~~~sp~v~~g~l~v~~~~-------G~l~~ld~~tG~ 356 (394)
T PRK11138 303 -------NDRVYALDTRGGVELWSQSDL-----LHRLLTAPVLYNGYLVVGDSE-------GYLHWINREDGR 356 (394)
T ss_pred -------CCeEEEEECCCCcEEEccccc-----CCCcccCCEEECCEEEEEeCC-------CEEEEEECCCCC
Confidence 2359999998764 764221 122333445678888875321 248899998875
No 57
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.68 E-value=0.76 Score=45.58 Aligned_cols=171 Identities=20% Similarity=0.243 Sum_probs=91.4
Q ss_pred cCCCCCC--CCceEEEEECCEEEEEcCCC-------C----------CCCCCcEEEEECCCCeEEeccccCCCCCCCCCe
Q 009435 78 KGSPPTP--RDSHSCTTVGENLYVFGGTD-------G----------MNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (535)
Q Consensus 78 ~g~~P~~--R~~hs~~~~~~~Iyv~GG~~-------~----------~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (535)
.|+.|.. -.+.+...+++.|| |||+- + .+-++.++.||..+++-+.+-.. ..-.++.-.
T Consensus 28 vG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke-sih~~~~Wa 105 (339)
T PF09910_consen 28 VGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE-SIHDKTKWA 105 (339)
T ss_pred ccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec-ccCCccccc
Confidence 4455532 23345556677776 78861 1 12357899999998763222110 111222111
Q ss_pred E--E-EE---ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCC
Q 009435 139 S--A-AL---VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH 212 (535)
Q Consensus 139 s--~-~~---~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~ 212 (535)
+ + .. ++++|++.=+ +....-.+|..|.++..-+++... |..+ .+..++..++ |.+.-
T Consensus 106 GEVSdIlYdP~~D~LLlAR~--------DGh~nLGvy~ldr~~g~~~~L~~~---ps~K---G~~~~D~a~F---~i~~~ 168 (339)
T PF09910_consen 106 GEVSDILYDPYEDRLLLARA--------DGHANLGVYSLDRRTGKAEKLSSN---PSLK---GTLVHDYACF---GINNF 168 (339)
T ss_pred cchhheeeCCCcCEEEEEec--------CCcceeeeEEEcccCCceeeccCC---CCcC---ceEeeeeEEE---ecccc
Confidence 1 1 12 2477888744 333456799999999998888733 3321 2222333333 22222
Q ss_pred CcccCceEEEECCCCcE--EEeecC----CCCCCCceeeEEEEECCEEEEE-eccCCCCCccCcEEEEecC
Q 009435 213 DYYLSDVHILDTDTLTW--KELNTS----GMVLSPRAGHSTVAFGKNLFVF-GGFTDSQNLYDDLYMIDVD 276 (535)
Q Consensus 213 ~~~~~~i~~yd~~t~~W--~~v~~~----g~~p~~R~~hs~v~~~~~iyv~-GG~~~~~~~~~dv~~yd~~ 276 (535)
..-...+.+||+.+++| +..... +.....|..-.++...+++|.| +|- +.+.||-
T Consensus 169 ~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGG---------i~vgnP~ 230 (339)
T PF09910_consen 169 HKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGG---------IFVGNPY 230 (339)
T ss_pred ccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEecc---------EEEeCCC
Confidence 22357799999999999 333321 1112234444566666776655 332 5666665
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.64 E-value=1.1 Score=46.72 Aligned_cols=188 Identities=16% Similarity=0.201 Sum_probs=100.7
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
++.+|+.+.. ..+++||..++ .|+.- .+.. ...+.+..++.+|+.+. -..++.+|..++
T Consensus 65 ~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~-----~~~~-~~~~p~v~~~~v~v~~~------~g~l~ald~~tG 125 (377)
T TIGR03300 65 GGKVYAADAD-------GTVVALDAETGKRLWRVD-----LDER-LSGGVGADGGLVFVGTE------KGEVIALDAEDG 125 (377)
T ss_pred CCEEEEECCC-------CeEEEEEccCCcEeeeec-----CCCC-cccceEEcCCEEEEEcC------CCEEEEEECCCC
Confidence 5567765431 36999998765 58762 2211 12233445677776542 247999998776
Q ss_pred e--EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeE
Q 009435 121 T--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTC 196 (535)
Q Consensus 121 ~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~ 196 (535)
+ |+... +.. ...+.+..++.+|+..+ ...++++|+++. .|+.-... +....+...+.
T Consensus 126 ~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~------------~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp 186 (377)
T TIGR03300 126 KELWRAKL-----SSE-VLSPPLVANGLVVVRTN------------DGRLTALDAATGERLWTYSRVT-PALTLRGSASP 186 (377)
T ss_pred cEeeeecc-----Cce-eecCCEEECCEEEEECC------------CCeEEEEEcCCCceeeEEccCC-CceeecCCCCC
Confidence 4 86532 111 11233445777777544 245889998765 47754321 11011222334
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCC--cEEEeecCC--CCCCCc---eeeEEEEECCEEEEEeccCCCCCccCc
Q 009435 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSG--MVLSPR---AGHSTVAFGKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~v~~~g--~~p~~R---~~hs~v~~~~~iyv~GG~~~~~~~~~d 269 (535)
++.++.+| +|..+ ..++.+|++++ .|+.-...+ .....| ...+.+..++.+|+.... ..
T Consensus 187 ~~~~~~v~-~~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-------g~ 252 (377)
T TIGR03300 187 VIADGGVL-VGFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-------GR 252 (377)
T ss_pred EEECCEEE-EECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-------CE
Confidence 45566554 44322 25889998776 476432100 000001 122344567777775431 34
Q ss_pred EEEEecCCC--cEEE
Q 009435 270 LYMIDVDSG--LWTK 282 (535)
Q Consensus 270 v~~yd~~~~--~W~~ 282 (535)
++.||++++ .|..
T Consensus 253 l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 253 VAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEECCCCcEEEee
Confidence 899999876 4754
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.61 E-value=0.11 Score=53.64 Aligned_cols=130 Identities=14% Similarity=0.245 Sum_probs=79.9
Q ss_pred EEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCce-eee
Q 009435 89 SCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEV-YYN 166 (535)
Q Consensus 89 s~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~-~~n 166 (535)
.++.+ +++|+.++.. ..+.+||+.+..-...+ .++.+...-.++.++++||++............. ..-
T Consensus 70 ~F~al~gskIv~~d~~------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEEEecCCeEEEEcCC------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 34444 8999998654 45999999998876555 4555666667788899999998864321111110 012
Q ss_pred eEEEEE--------CCCccEEEeccCCCCCCCCC-------ceeEEee-CCEEEE-EecCCCCCcccCceEEEECCCCcE
Q 009435 167 DLYILN--------TETFVWKRATTSGNPPSARD-------SHTCSSW-KNKIIV-IGGEDGHDYYLSDVHILDTDTLTW 229 (535)
Q Consensus 167 ~v~~yd--------~~t~~W~~~~~~~~~p~~r~-------~~s~~~~-~~~lyv-~GG~~~~~~~~~~i~~yd~~t~~W 229 (535)
++..|+ .....|+.++. +|..+. -.+.+++ +..|+| .-|.. ...+.||+.+.+|
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W 211 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEW 211 (342)
T ss_pred EEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcce
Confidence 223333 23446777652 333332 2344555 667887 43321 2389999999999
Q ss_pred EEeecCC
Q 009435 230 KELNTSG 236 (535)
Q Consensus 230 ~~v~~~g 236 (535)
+.+....
T Consensus 212 ~~~GdW~ 218 (342)
T PF07893_consen 212 RKHGDWM 218 (342)
T ss_pred eecccee
Confidence 9997643
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.28 E-value=0.96 Score=46.79 Aligned_cols=122 Identities=22% Similarity=0.360 Sum_probs=76.9
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCC-----
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLR----- 110 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~----- 110 (535)
.++++ .+++|+.++.. ..+.+||+.+..-...+ .++.+...-.++.++++||++..........
T Consensus 70 ~F~al-~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 70 DFFAL-HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred EEEEe-cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccce
Confidence 34444 46678888654 34889999998776543 5666666668888899999998864332211
Q ss_pred cEEEE--E--------CCCCeEEeccccCCCCCCCCC-------eEEEEE-CCEEEE-EcCCCCCCCCCCceeeeeEEEE
Q 009435 111 DLHIL--D--------TSSHTWISPSVRGEGPEAREG-------HSAALV-GKRLFI-FGGCGKSSNTNDEVYYNDLYIL 171 (535)
Q Consensus 111 ~~~~y--d--------~~t~~W~~~~~~g~~p~~r~~-------hs~~~~-~~~lyv-~GG~~~~~~~~~~~~~n~v~~y 171 (535)
.++++ + .....|+.++ ++|..+.. .+.+++ +..|+| .-|. ....|.|
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~-----------~~GTysf 204 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR-----------RWGTYSF 204 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCC-----------ceEEEEE
Confidence 45555 3 1234677766 33333332 233444 556777 4331 0348999
Q ss_pred ECCCccEEEec
Q 009435 172 NTETFVWKRAT 182 (535)
Q Consensus 172 d~~t~~W~~~~ 182 (535)
|+.+.+|+++.
T Consensus 205 Dt~~~~W~~~G 215 (342)
T PF07893_consen 205 DTESHEWRKHG 215 (342)
T ss_pred EcCCcceeecc
Confidence 99999999985
No 61
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.41 E-value=0.66 Score=46.47 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=72.4
Q ss_pred eeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecC--CCCCC
Q 009435 164 YYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMVLS 240 (535)
Q Consensus 164 ~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~--g~~p~ 240 (535)
....+..||+.+.+|..+... ..-.-..+... +++||+.|-....+.....+..||.++.+|..+... ...|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~----i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG----ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC----ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 367899999999999998632 22223344444 677888876654443345699999999999988762 23454
Q ss_pred CceeeEEEEEC-CEEEEEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 241 PRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 241 ~R~~hs~v~~~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
+....+....+ +++++.|..... ...+..|| ..+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g---~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANG---STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCC---CceEEEEc--CCceEeccc
Confidence 54333333333 467777775221 33466675 678998876
No 62
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.30 E-value=0.81 Score=47.72 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=89.0
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECC
Q 009435 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE 174 (535)
Q Consensus 95 ~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~ 174 (535)
-.+.+.+|+++. -.+|..|-.+|.- +...--.-.|.........+....+++|+ ..-+|.||+.
T Consensus 225 ~plllvaG~d~~---lrifqvDGk~N~~--lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----------rky~ysyDle 288 (514)
T KOG2055|consen 225 APLLLVAGLDGT---LRIFQVDGKVNPK--LQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----------RKYLYSYDLE 288 (514)
T ss_pred CceEEEecCCCc---EEEEEecCccChh--heeeeeccCccceeeecCCCceEEEeccc-----------ceEEEEeecc
Confidence 348888988653 3456666555542 22000011222222222223337777774 3558999999
Q ss_pred CccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEE
Q 009435 175 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNL 254 (535)
Q Consensus 175 t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~i 254 (535)
+.+-.++......+.+-...--+...+.++++-|.++ -|+.+...|+.|..--. ++-.....+....+..|
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~K---ieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSFK---IEGVVSDFTFSSDSKEL 359 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhheee---eccEEeeEEEecCCcEE
Confidence 9999998755444422222233445666777777544 48888888888865321 22222333444445678
Q ss_pred EEEeccCCCCCccCcEEEEecCCCc
Q 009435 255 FVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 255 yv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
++.||.. .||++|+..+.
T Consensus 360 ~~~~~~G-------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 360 LASGGTG-------EVYVWNLRQNS 377 (514)
T ss_pred EEEcCCc-------eEEEEecCCcc
Confidence 8888863 49999999884
No 63
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.18 E-value=5.4 Score=42.57 Aligned_cols=210 Identities=15% Similarity=0.107 Sum_probs=102.6
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
++++.|+... .... ...+|++|+.+++...+. ..+......+...-+.+|++....++ ..++|++|..+.
T Consensus 211 pDG~~lay~s-~~~g---~~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~ 280 (435)
T PRK05137 211 PNRQEITYMS-YANG---RPRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG 280 (435)
T ss_pred CCCCEEEEEE-ecCC---CCEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC---CceEEEEECCCC
Confidence 4566554433 2111 157999999988877754 22221111111122345554433222 357999999988
Q ss_pred eEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeC
Q 009435 121 TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK 200 (535)
Q Consensus 121 ~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~ 200 (535)
..+++.. .+.. ........+++.++|... ..+ ...+|++|..+...+.+... ..........-+
T Consensus 281 ~~~~Lt~---~~~~-~~~~~~spDG~~i~f~s~-----~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~Spd 344 (435)
T PRK05137 281 TTTRLTD---SPAI-DTSPSYSPDGSQIVFESD-----RSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPR 344 (435)
T ss_pred ceEEccC---CCCc-cCceeEcCCCCEEEEEEC-----CCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCC
Confidence 7766542 1111 111222234443334321 001 24689999988877777532 111111122224
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcE
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (535)
++.+++...... ...++.+|+.+...+.+... .........-+++.+++-...........+|++|+....-
T Consensus 345 G~~ia~~~~~~~---~~~i~~~d~~~~~~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 345 GDLIAFTKQGGG---QFSIGVMKPDGSGERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCEEEEEEcCCC---ceEEEEEECCCCceEeccCC-----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 444333332221 24688999877766655431 1111222333455444443322111124699999987766
Q ss_pred EEEe
Q 009435 281 TKVI 284 (535)
Q Consensus 281 ~~l~ 284 (535)
..+.
T Consensus 417 ~~l~ 420 (435)
T PRK05137 417 REVP 420 (435)
T ss_pred EEcc
Confidence 6554
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.15 E-value=4.8 Score=41.86 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=93.1
Q ss_pred ceEEEEEcCCC--eEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC--eEEeccccCC--CCC
Q 009435 60 NQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRGE--GPE 133 (535)
Q Consensus 60 ~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~g~--~p~ 133 (535)
..++.+|..++ .|+... .++....+...+.+..++.+| +|..+ ..++.+|+.++ .|+....... ...
T Consensus 155 g~l~a~d~~tG~~~W~~~~-~~~~~~~~~~~sp~~~~~~v~-~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSR-VTPALTLRGSASPVIADGGVL-VGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred CeEEEEEcCCCceeeEEcc-CCCceeecCCCCCEEECCEEE-EECCC-----CEEEEEEccCCCEeeeeccccCCCCCch
Confidence 45889998765 577532 111111122334455566655 44322 36899998776 4754211000 000
Q ss_pred C---CCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEec
Q 009435 134 A---REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (535)
Q Consensus 134 ~---r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG 208 (535)
. ....+.+..++.+|+... ...+++||+.+. .|+.-. + ...+.++.++.+|+...
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~------------~g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSY------------QGRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA 287 (377)
T ss_pred hhhhccCCccEEECCEEEEEEc------------CCEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC
Confidence 0 112234456778887543 235889998765 476531 1 11234456888888642
Q ss_pred CCCCCcccCceEEEECCCC--cEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 209 EDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~--~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
...++++|..+. .|+.... ..+...+.+..++.+|+.. . ...++++|..+++
T Consensus 288 -------~G~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~------~G~l~~~d~~tG~ 341 (377)
T TIGR03300 288 -------DGVVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F------EGYLHWLSREDGS 341 (377)
T ss_pred -------CCeEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C------CCEEEEEECCCCC
Confidence 235899998776 4765221 1122223345677777643 2 1348999987664
No 65
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.96 E-value=2 Score=40.55 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=75.2
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCC-CCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPP-TPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P-~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
+.+|+|-| +.+|+++..........+...-| .+..--++... ++++|+|-| +..|+|+..+.
T Consensus 17 g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------~~yw~~~~~~~ 81 (194)
T cd00094 17 GELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------DKYWVYTGKNL 81 (194)
T ss_pred CEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------CEEEEEcCccc
Confidence 67999977 46888886522211111111111 11112223333 278999977 47888887652
Q ss_pred eEEecccc--CCCCC--CCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE-----ecc-CCCCCC
Q 009435 121 TWISPSVR--GEGPE--AREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-----ATT-SGNPPS 189 (535)
Q Consensus 121 ~W~~~~~~--g~~p~--~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~-----~~~-~~~~p~ 189 (535)
.+...... -..|. .....+.... ++++|+|.| +..++||....+... +.. -..+|.
T Consensus 82 ~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~ 148 (194)
T cd00094 82 EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------------DKYWRYDEKTQKMDPGYPKLIETDFPGVPD 148 (194)
T ss_pred ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------------CEEEEEeCCCccccCCCCcchhhcCCCcCC
Confidence 22111100 01121 2222333332 578999988 457888876554321 110 011222
Q ss_pred CCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc
Q 009435 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (535)
Q Consensus 190 ~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~ 228 (535)
. ...+....++++|+|-| +..++||..+.+
T Consensus 149 ~-idaa~~~~~~~~yfF~g--------~~y~~~d~~~~~ 178 (194)
T cd00094 149 K-VDAAFRWLDGYYYFFKG--------DQYWRFDPRSKE 178 (194)
T ss_pred C-cceeEEeCCCcEEEEEC--------CEEEEEeCccce
Confidence 1 22223233488999977 458899988765
No 66
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.47 E-value=8.9 Score=41.69 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=66.8
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccC-CCCCC-CCCeEEEEEC-CEEEEEcCCCCCCCCCCce
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRG-EGPEA-REGHSAALVG-KRLFIFGGCGKSSNTNDEV 163 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g-~~p~~-r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~ 163 (535)
+-++.+++||+.... ..++.+|..|.+ |+...... ....+ ......++.+ +++|+...
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~----------- 118 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF----------- 118 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-----------
Confidence 345779999987542 479999998765 87533111 00001 1112234445 77777433
Q ss_pred eeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCC---cccCceEEEECCCCc--EEEee
Q 009435 164 YYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHD---YYLSDVHILDTDTLT--WKELN 233 (535)
Q Consensus 164 ~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~---~~~~~i~~yd~~t~~--W~~v~ 233 (535)
...++.+|.++. .|+.-......+......+.++.++.+|+ |..+... .....++.||.++.+ |+.-.
T Consensus 119 -~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 119 -DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred -CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 246889998765 58765321000000012233445666554 4322111 123568999998764 87643
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.15 E-value=6 Score=38.43 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=106.2
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
++.+|+.-- ....++++|+.+.+-..+...+ -.+++.. ++++|+... ..+.++|+.++
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG 70 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence 556777622 2367999999998876654211 3444444 688888864 34677799999
Q ss_pred eEEecccc--CCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe
Q 009435 121 TWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (535)
Q Consensus 121 ~W~~~~~~--g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~ 198 (535)
+++.+... +..+..+..-.++.-+++||+-.-.... ........++++++. .+...+...... .-.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~---~~~~~~g~v~~~~~~-~~~~~~~~~~~~-----pNGi~~ 141 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG---ASGIDPGSVYRIDPD-GKVTVVADGLGF-----PNGIAF 141 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC---TTCGGSEEEEEEETT-SEEEEEEEEESS-----EEEEEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc---cccccccceEEECCC-CeEEEEecCccc-----ccceEE
Confidence 99876532 1113333333344446788775321100 000001679999998 665555422111 123333
Q ss_pred e--CCEEEEEecCCCCCcccCceEEEECC--CCcEEEeecCCCCCCCc--eeeEEEEECCEEEEEeccCCCCCccCcEEE
Q 009435 199 W--KNKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVLSPR--AGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 199 ~--~~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~~v~~~g~~p~~R--~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
. ++.||+.-- ..+.|++|++. +..+......-..+... ..-.++-.+++|||..-. .+.|++
T Consensus 142 s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~ 209 (246)
T PF08450_consen 142 SPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVV 209 (246)
T ss_dssp ETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEE
T ss_pred CCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEE
Confidence 3 446777422 34569999885 33343322110112211 122233346789887321 235999
Q ss_pred EecCCCcEEEEee
Q 009435 273 IDVDSGLWTKVIT 285 (535)
Q Consensus 273 yd~~~~~W~~l~~ 285 (535)
||++...-..+..
T Consensus 210 ~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 210 FDPDGKLLREIEL 222 (246)
T ss_dssp EETTSCEEEEEE-
T ss_pred ECCCccEEEEEcC
Confidence 9999655555543
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.11 E-value=0.76 Score=46.04 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=63.4
Q ss_pred Eec-CCCCCc-ccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEE
Q 009435 206 IGG-EDGHDY-YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 206 ~GG-~~~~~~-~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (535)
+|| +...+. .+..+..||+.+.+|..+.. -.... -..+... ++++|+.|-++-.+.....+..||.++.+|+.
T Consensus 3 VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 3 VGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---GISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred EeeecCCCCCcCCCEEEEEECCCCEeecCCC---CceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee
Confidence 444 443332 47789999999999998765 11111 1233333 67788887766544345669999999999998
Q ss_pred EeeC--CCCCCCceeeeeeeecccCCCEEEEEccc
Q 009435 283 VITT--GEGPSARFSVAGDCLDPLKGGVLVFIGGC 315 (535)
Q Consensus 283 l~~~--~~~p~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (535)
+... ...|.+-.... +.......+++.|..
T Consensus 79 ~~~~~s~~ipgpv~a~~---~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALT---FISNDGSNFWVAGRS 110 (281)
T ss_pred cCCcccccCCCcEEEEE---eeccCCceEEEecee
Confidence 8773 23344332222 222344567777765
No 69
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.00 E-value=10 Score=40.49 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=75.5
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p 188 (535)
..+|++|+.+++.+.+. ..+...... ...-++ .|++....+ -..++|++|+.+.....+... +
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~-~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt~~---~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAP-RFSPDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLTDS---P 289 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCc-EECCCCCEEEEEEecC---------CCceEEEEECCCCceEEccCC---C
Confidence 68999999998876654 222221222 222234 454433211 135799999998887777532 1
Q ss_pred CCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccC
Q 009435 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (535)
Q Consensus 189 ~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~ 268 (535)
.. .......-+++.++|...... ..+++++|..+...+.+... ..........-+++.+++...... ..
T Consensus 290 ~~-~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---~~ 358 (435)
T PRK05137 290 AI-DTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---QF 358 (435)
T ss_pred Cc-cCceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC---ce
Confidence 11 111122224443334332111 24799999988877776531 111112222334443333322111 24
Q ss_pred cEEEEecCCCcEEEEe
Q 009435 269 DLYMIDVDSGLWTKVI 284 (535)
Q Consensus 269 dv~~yd~~~~~W~~l~ 284 (535)
.++++|+.......+.
T Consensus 359 ~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 359 SIGVMKPDGSGERILT 374 (435)
T ss_pred EEEEEECCCCceEecc
Confidence 6899998777665553
No 70
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.77 E-value=0.87 Score=47.51 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=70.7
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
++..++|...++++|.. .-+|.||..+.+-.++.....++.+-...-.+..++.+.++-|.. ..++.+.
T Consensus 263 a~f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lLh 331 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLLH 331 (514)
T ss_pred eeecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEeeh
Confidence 44445555477777743 468999999998888764444442222222333445555555543 3578888
Q ss_pred CCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE
Q 009435 117 TSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (535)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W 178 (535)
..|++|..-- .++.....++....+..|++.||. ..||++|+.+..-
T Consensus 332 akT~eli~s~---KieG~v~~~~fsSdsk~l~~~~~~------------GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 332 AKTKELITSF---KIEGVVSDFTFSSDSKELLASGGT------------GEVYVWNLRQNSC 378 (514)
T ss_pred hhhhhhhhee---eeccEEeeEEEecCCcEEEEEcCC------------ceEEEEecCCcce
Confidence 8888884211 233333444444555679999993 4699999988743
No 71
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.67 E-value=6.3 Score=37.06 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=77.8
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE--Eecccc-CCCCCCCCCeEEEEEC-CEEEEEcCCCCCCCCCCcee
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW--ISPSVR-GEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVY 164 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~-g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~ 164 (535)
+++...+++|+|-| +.+|+++...... ..+... ..+| .....+..... +++|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg------------ 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKG------------ 70 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECC------------
Confidence 34445689999977 4688887652211 111110 0122 12233333333 78999988
Q ss_pred eeeEEEEECCCccEE---EeccCCCCCC-CCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEE-----eec
Q 009435 165 YNDLYILNTETFVWK---RATTSGNPPS-ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LNT 234 (535)
Q Consensus 165 ~n~v~~yd~~t~~W~---~~~~~~~~p~-~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----v~~ 234 (535)
+..|+|+..+..+. .+...+-++. .....+.... ++++|+|-| +..++||..+++... +..
T Consensus 71 -~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~ 141 (194)
T cd00094 71 -DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIET 141 (194)
T ss_pred -CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchhh
Confidence 35777876542221 1111111111 2222233222 589999977 347888876554321 110
Q ss_pred -CCCCCCCceeeEEEEEC-CEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 235 -SGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 235 -~g~~p~~R~~hs~v~~~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
...+|.. . .++.... +++|+|-|. ..|+||..+.+
T Consensus 142 ~w~g~p~~-i-daa~~~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 142 DFPGVPDK-V-DAAFRWLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred cCCCcCCC-c-ceeEEeCCCcEEEEECC--------EEEEEeCccce
Confidence 0112221 2 2333344 889999874 48999988765
No 72
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.59 E-value=12 Score=40.13 Aligned_cols=189 Identities=14% Similarity=0.145 Sum_probs=94.7
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (535)
..+|++|..+++-..+. ..+......+...-+.+|++....++ ..++|++|..+++.+++.... ......
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~----~~~~~p 311 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHR----AIDTEP 311 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCC----CCccce
Confidence 57999999888766653 22211111111122445665543222 257999999998887665211 111111
Q ss_pred EEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCc
Q 009435 140 AALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD 218 (535)
Q Consensus 140 ~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~ 218 (535)
....++ .|++..... + ...+|++|+.+.+++.+...+.. .......-+++.+++.+.... ...
T Consensus 312 ~wSpDG~~I~f~s~~~------g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~g---~~~ 375 (448)
T PRK04792 312 SWHPDGKSLIFTSERG------G---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTNG---KFN 375 (448)
T ss_pred EECCCCCEEEEEECCC------C---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecCC---ceE
Confidence 222244 454443211 1 24799999999999888632211 111122224444444333222 246
Q ss_pred eEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 219 VHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 219 i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
++.+|+.+...+.+.... ... .. ...-+++.+++...... ...+++++.+ +.+...
T Consensus 376 I~~~dl~~g~~~~lt~~~---~d~-~p-s~spdG~~I~~~~~~~g---~~~l~~~~~~-G~~~~~ 431 (448)
T PRK04792 376 IARQDLETGAMQVLTSTR---LDE-SP-SVAPNGTMVIYSTTYQG---KQVLAAVSID-GRFKAR 431 (448)
T ss_pred EEEEECCCCCeEEccCCC---CCC-Cc-eECCCCCEEEEEEecCC---ceEEEEEECC-CCceEE
Confidence 899999999887765321 111 11 22334444444333221 2347888864 444443
No 73
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.57 E-value=5.3 Score=39.44 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=90.3
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
++.+|.--|..+. +.+..+|+.+++-.+.. .+|..-.+=+++.++++||..-=. ....++||..+-+=
T Consensus 55 ~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 55 DGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNTLKK 122 (264)
T ss_dssp TTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTTTEE
T ss_pred CCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec-----CCeEEEEccccceE
Confidence 4457666665432 57899999998765432 677777888999999999988522 35789999987432
Q ss_pred EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE-eccC-CCCCCCCCceeEEeeC
Q 009435 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTS-GNPPSARDSHTCSSWK 200 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~-~~~~-~~~p~~r~~~s~~~~~ 200 (535)
+. ..+.+..+-+++..+..|++--| ++.++.+|+.+.+-.. +... ...|..+ ---+-.++
T Consensus 123 --~~---~~~y~~EGWGLt~dg~~Li~SDG------------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE~i~ 184 (264)
T PF05096_consen 123 --IG---TFPYPGEGWGLTSDGKRLIMSDG------------SSRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELEYIN 184 (264)
T ss_dssp --EE---EEE-SSS--EEEECSSCEEEE-S------------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEET
T ss_pred --EE---EEecCCcceEEEcCCCEEEEECC------------ccceEEECCcccceEEEEEEEECCEECCC-cEeEEEEc
Confidence 22 23334588889988889999888 5789999998764332 2211 0111111 11122335
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v 232 (535)
+.||.= -...+.|.+.||++++-...
T Consensus 185 G~IyAN------VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 185 GKIYAN------VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp TEEEEE------ETTSSEEEEEETTT-BEEEE
T ss_pred CEEEEE------eCCCCeEEEEeCCCCeEEEE
Confidence 555531 11346699999999875553
No 74
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.51 E-value=12 Score=39.74 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=98.5
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE--ECCEEEEEcCCCCCCCCCcEEEEECC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
+++++|+... ... ....+|++|..+++-+.+.. .+. ....... -+++|++..-.++ ..++|++|..
T Consensus 208 pDG~~la~~s-~~~---~~~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~ 275 (430)
T PRK00178 208 PDGKRIAYVS-FEQ---KRPRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLA 275 (430)
T ss_pred CCCCEEEEEE-cCC---CCCEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECC
Confidence 4566664433 221 12479999999887776541 111 1111111 1345554332222 2589999999
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEE
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~ 197 (535)
+...+++.. .+. .........++ .|++..... + ...+|.+|+.+..++.+...+ ........
T Consensus 276 ~~~~~~lt~---~~~-~~~~~~~spDg~~i~f~s~~~------g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~ 338 (430)
T PRK00178 276 SRQLSRVTN---HPA-IDTEPFWGKDGRTLYFTSDRG------G---KPQIYKVNVNGGRAERVTFVG----NYNARPRL 338 (430)
T ss_pred CCCeEEccc---CCC-CcCCeEECCCCCEEEEEECCC------C---CceEEEEECCCCCEEEeecCC----CCccceEE
Confidence 988876542 111 11111222234 455443211 1 246899999998888876321 11111122
Q ss_pred ee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecC
Q 009435 198 SW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (535)
Q Consensus 198 ~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (535)
.- ++.|++....++ ...++.+|+.+...+.+...+. . ......-+++.+++...... ...++..+..
T Consensus 339 Spdg~~i~~~~~~~~----~~~l~~~dl~tg~~~~lt~~~~---~--~~p~~spdg~~i~~~~~~~g---~~~l~~~~~~ 406 (430)
T PRK00178 339 SADGKTLVMVHRQDG----NFHVAAQDLQRGSVRILTDTSL---D--ESPSVAPNGTMLIYATRQQG---RGVLMLVSIN 406 (430)
T ss_pred CCCCCEEEEEEccCC----ceEEEEEECCCCCEEEccCCCC---C--CCceECCCCCEEEEEEecCC---ceEEEEEECC
Confidence 22 344554433221 2359999999998887754211 1 11123335555555443221 2347777765
Q ss_pred CC
Q 009435 277 SG 278 (535)
Q Consensus 277 ~~ 278 (535)
.+
T Consensus 407 g~ 408 (430)
T PRK00178 407 GR 408 (430)
T ss_pred CC
Confidence 43
No 75
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.42 E-value=12 Score=39.38 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=78.4
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p 188 (535)
..++++|+.++....+.. ....... .....++ .|++..... -..++|.+|+.+...+.+......
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~---------~~~~i~~~d~~~~~~~~l~~~~~~- 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKD---------GNPDIYVMDLDGKQLTRLTNGPGI- 279 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCC---------CCccEEEEECCCCCEEECCCCCCC-
Confidence 579999998886655442 1211111 1222233 455543311 125789999998887777532111
Q ss_pred CCCCceeEEeeCC-EEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCcc
Q 009435 189 SARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 267 (535)
Q Consensus 189 ~~r~~~s~~~~~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~ 267 (535)
.... ....++ +|++.....+ ...++.+|..+..++.+...+. ........-+++.+++..... -.
T Consensus 280 --~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~----~~~~~~~spdg~~i~~~~~~~---~~ 345 (417)
T TIGR02800 280 --DTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGG----YNASPSWSPDGDLIAFVHREG---GG 345 (417)
T ss_pred --CCCE-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCC----CccCeEECCCCCEEEEEEccC---Cc
Confidence 1111 112244 4444432221 2479999999888887754221 111112233455555554432 13
Q ss_pred CcEEEEecCCCcEEEEee
Q 009435 268 DDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 268 ~dv~~yd~~~~~W~~l~~ 285 (535)
..++++|+.+..+..+..
T Consensus 346 ~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 346 FNIAVMDLDGGGERVLTD 363 (417)
T ss_pred eEEEEEeCCCCCeEEccC
Confidence 469999999877766643
No 76
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.87 E-value=14 Score=38.87 Aligned_cols=189 Identities=14% Similarity=0.080 Sum_probs=101.6
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCC------CCcEEEEECCCCeEEeccccCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNP------LRDLHILDTSSHTWISPSVRGEGP 132 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~------~~~~~~yd~~t~~W~~~~~~g~~p 132 (535)
..++++|..+++...-. ++.++... ++-. +++.+++...+.... -..++++...+..-.-..+. ..+
T Consensus 150 ~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf-e~~ 223 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF-EEP 223 (414)
T ss_dssp EEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE-C-T
T ss_pred EEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE-eec
Confidence 56899999998654311 12222222 3333 345666655544322 67899999887653211111 112
Q ss_pred CCCC-CeEEEE-ECCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCc-----cEEEeccCCCCCCCCCceeEEeeCCEEE
Q 009435 133 EARE-GHSAAL-VGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF-----VWKRATTSGNPPSARDSHTCSSWKNKII 204 (535)
Q Consensus 133 ~~r~-~hs~~~-~~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~-----~W~~~~~~~~~p~~r~~~s~~~~~~~ly 204 (535)
.... ...+.. -+++ |+|.-.. ... .++++.+|.... .|..+.. +..-..+.+...++.+|
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~-------~~~-~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~y 291 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSS-------GTS-ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLY 291 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEES-------SSS-EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEE
T ss_pred CCCcEEEEEEecCcccEEEEEEEc-------ccc-CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEE
Confidence 2222 222222 2333 4443331 111 588999999875 8988862 22223334445589999
Q ss_pred EEecCCCCCcccCceEEEECCCCc---EEEeecCCCCCCC-ceeeEEEEECCEEEEEeccCCCCCccCcEEEEecC
Q 009435 205 VIGGEDGHDYYLSDVHILDTDTLT---WKELNTSGMVLSP-RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (535)
Q Consensus 205 v~GG~~~~~~~~~~i~~yd~~t~~---W~~v~~~g~~p~~-R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (535)
+.-..+. ....|..+++.+.. |..+-. .+.. ...-.+...++.|++.-=.. ....|.++|+.
T Consensus 292 i~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~ 357 (414)
T PF02897_consen 292 ILTNDDA---PNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLD 357 (414)
T ss_dssp EEE-TT----TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT
T ss_pred EeeCCCC---CCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECC
Confidence 8876333 34678899987765 774332 2223 23444556788887765432 25669999988
No 77
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.74 E-value=16 Score=39.18 Aligned_cols=149 Identities=11% Similarity=0.100 Sum_probs=78.8
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~ 189 (535)
..+|++|+.+.+-+.+. ..+......+....++.|++....+ + ..++|++|+.+.+.+.+.....
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~------g---~~~Iy~~dl~tg~~~~lt~~~~--- 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKD------G---QPEIYVVDIATKALTRITRHRA--- 306 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCC------C---CeEEEEEECCCCCeEECccCCC---
Confidence 57999999887765544 2221111112222234465543211 1 2579999999998888763211
Q ss_pred CCCceeEEeeCC-EEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccC
Q 009435 190 ARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (535)
Q Consensus 190 ~r~~~s~~~~~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~ 268 (535)
........-++ .|++.....+ ..+++.+|+++.+++.+...+.. .......-+++.+++.+... -..
T Consensus 307 -~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~---g~~ 374 (448)
T PRK04792 307 -IDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTN---GKF 374 (448)
T ss_pred -CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecC---Cce
Confidence 11111112244 4544432221 24799999999999887532211 11112333444444433322 124
Q ss_pred cEEEEecCCCcEEEEee
Q 009435 269 DLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 269 dv~~yd~~~~~W~~l~~ 285 (535)
.++++|+.++....+..
T Consensus 375 ~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 375 NIARQDLETGAMQVLTS 391 (448)
T ss_pred EEEEEECCCCCeEEccC
Confidence 69999999988776643
No 78
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.72 E-value=11 Score=36.96 Aligned_cols=185 Identities=21% Similarity=0.204 Sum_probs=89.1
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-C-CEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-G-ENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
.+|+.++.+ +.+.+||+.+++-...-..+. .++ +++.. + ..+|+.++. .+.+.+||..+.+.
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~--~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQ--RPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEV 65 (300)
T ss_pred cEEEEecCC------CEEEEEECCCCceEEEEECCC--CCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcE
Confidence 366666643 468899988775433221111 122 22222 3 357777653 24688999988776
Q ss_pred EeccccCCCCCCCCCeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe-e
Q 009435 123 ISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-W 199 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~-~ 199 (535)
...-. ....+ ..++.. + +.+|+.++. .+.+.++|+.+..-...- +......+++. .
T Consensus 66 ~~~~~--~~~~~---~~~~~~~~g~~l~~~~~~-----------~~~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~ 124 (300)
T TIGR03866 66 IGTLP--SGPDP---ELFALHPNGKILYIANED-----------DNLVTVIDIETRKVLAEI-----PVGVEPEGMAVSP 124 (300)
T ss_pred EEecc--CCCCc---cEEEECCCCCEEEEEcCC-----------CCeEEEEECCCCeEEeEe-----eCCCCcceEEECC
Confidence 43211 11111 122222 3 356665541 245888898775422111 11111122333 3
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
++.+++++..+. +.++.||..+..-......+. +..+.....+++.+++++..+ ..+.+||+++.+
T Consensus 125 dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~-----~~v~i~d~~~~~ 190 (300)
T TIGR03866 125 DGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG-----GTVSVIDVATRK 190 (300)
T ss_pred CCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC-----CEEEEEEcCcce
Confidence 566666665432 235667887654332111111 112223333455444444322 348999998765
Q ss_pred E
Q 009435 280 W 280 (535)
Q Consensus 280 W 280 (535)
.
T Consensus 191 ~ 191 (300)
T TIGR03866 191 V 191 (300)
T ss_pred e
Confidence 4
No 79
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.40 E-value=3.2 Score=36.14 Aligned_cols=85 Identities=8% Similarity=0.106 Sum_probs=55.7
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEe-cCC
Q 009435 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMID-VDS 277 (535)
Q Consensus 199 ~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd-~~~ 277 (535)
++|-+|-..-. .......|..||..+.+|+.+..+...........++.++++|-++.-........-++|+++ ..+
T Consensus 4 inGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 4 INGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred ECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 46666655544 112346699999999999999863112234556677888999888765443222235688884 567
Q ss_pred CcEEEEee
Q 009435 278 GLWTKVIT 285 (535)
Q Consensus 278 ~~W~~l~~ 285 (535)
..|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 78998755
No 80
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.30 E-value=21 Score=39.31 Aligned_cols=124 Identities=18% Similarity=0.140 Sum_probs=68.7
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccC-CC-C---CCCCCeEEEEECCEEEEEcCCCCCCCCCC
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRG-EG-P---EAREGHSAALVGKRLFIFGGCGKSSNTND 161 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g-~~-p---~~r~~hs~~~~~~~lyv~GG~~~~~~~~~ 161 (535)
+-+++++.||+... ...++.+|..|.+ |+.-.... .. + ......+.++.++++|+...
T Consensus 64 tPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------- 128 (527)
T ss_pred CCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---------
Confidence 44567899998654 2469999998854 87533110 00 0 11112334566788887433
Q ss_pred ceeeeeEEEEECCCc--cEEEeccCCCCCC-CCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEee
Q 009435 162 EVYYNDLYILNTETF--VWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (535)
Q Consensus 162 ~~~~n~v~~yd~~t~--~W~~~~~~~~~p~-~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~ 233 (535)
...++++|.++. .|+.-.. .... .....+-++.++.||+-.... +......++.||.++.+ |+.-.
T Consensus 129 ---dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 129 ---DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ---CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEeccC
Confidence 246899999876 4765431 1111 112223445678776643211 11134568999998875 77543
No 81
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.29 E-value=20 Score=39.03 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=50.6
Q ss_pred eeEEEEECCCcc--EEEeccCCCCCCCCCceeEEeeCCEEEEEecCCC-----------CCcccCceEEEECCCCc--EE
Q 009435 166 NDLYILNTETFV--WKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDG-----------HDYYLSDVHILDTDTLT--WK 230 (535)
Q Consensus 166 n~v~~yd~~t~~--W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~-----------~~~~~~~i~~yd~~t~~--W~ 230 (535)
..++.+|..+.+ |+.-... ..++...+.+|+-..... .......++.+|..+.+ |+
T Consensus 311 G~l~ald~~tG~~~W~~~~~~---------~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~ 381 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEVE---------QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWE 381 (488)
T ss_pred ceEEEEECCCCcEeeEeEeec---------cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeE
Confidence 458899998864 8754321 011111255665321100 01123468999988664 87
Q ss_pred EeecCCC-C---CCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc--EEE
Q 009435 231 ELNTSGM-V---LSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTK 282 (535)
Q Consensus 231 ~v~~~g~-~---p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~~ 282 (535)
.-..... . ..+.....++..++.+|+ |... ..++.+|.++++ |+.
T Consensus 382 ~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~d------G~l~ald~~tG~~lW~~ 432 (488)
T cd00216 382 KREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAAD------GYFRAFDATTGKELWKF 432 (488)
T ss_pred eeCCccccccccCCcccCcceEecCCeEEE-ECCC------CeEEEEECCCCceeeEE
Confidence 6432000 0 012222334455555444 4332 248999998874 763
No 82
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.18 E-value=17 Score=38.12 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (535)
..++++|..+++...+. ..+......+...-+.+|++....++ ..++|.+|+.+...+.+.... ..... .
T Consensus 214 ~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~---~~~~~-~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGP---GIDTE-P 283 (417)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCC---CCCCC-E
Confidence 46899999887666543 12211111111111345655443221 257999999988776654221 11111 1
Q ss_pred EEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEE-eeCCEEEEEecCCCCCcccC
Q 009435 140 AALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLS 217 (535)
Q Consensus 140 ~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~-~~~~~lyv~GG~~~~~~~~~ 217 (535)
....++ +|++..... . ...+|++|+.+..+..+...+. ...... .-+++.+++...... ..
T Consensus 284 ~~s~dg~~l~~~s~~~------g---~~~iy~~d~~~~~~~~l~~~~~-----~~~~~~~spdg~~i~~~~~~~~---~~ 346 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRG------G---SPQIYMMDADGGEVRRLTFRGG-----YNASPSWSPDGDLIAFVHREGG---GF 346 (417)
T ss_pred EECCCCCEEEEEECCC------C---CceEEEEECCCCCEEEeecCCC-----CccCeEECCCCCEEEEEEccCC---ce
Confidence 112244 454443311 1 2478999999888887763221 112222 235566666554331 24
Q ss_pred ceEEEECCCCcEEEeec
Q 009435 218 DVHILDTDTLTWKELNT 234 (535)
Q Consensus 218 ~i~~yd~~t~~W~~v~~ 234 (535)
.++.+|+.+..++.+..
T Consensus 347 ~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 347 NIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEEEeCCCCCeEEccC
Confidence 69999999877776653
No 83
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.07 E-value=19 Score=38.38 Aligned_cols=186 Identities=14% Similarity=0.121 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (535)
..++++|..+++-..+. ..+..........-+.+|++....++ ..++|++|+.+.+.+++... .. .....
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~-~~~~~ 297 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG-IDTEP 297 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC-Cccce
Confidence 56999999888776654 22211111111111345654432222 25799999998876655421 11 11111
Q ss_pred EEEECCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCc
Q 009435 140 AALVGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD 218 (535)
Q Consensus 140 ~~~~~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~ 218 (535)
...-+++ |++..... + ...+|.+|..+.+++.+...+... ...+....++.|++..+.+ . ...
T Consensus 298 ~~spDG~~l~f~sd~~------g---~~~iy~~dl~~g~~~~lt~~g~~~---~~~~~SpDG~~Ia~~~~~~-~---~~~ 361 (433)
T PRK04922 298 TWAPDGKSIYFTSDRG------G---RPQIYRVAASGGSAERLTFQGNYN---ARASVSPDGKKIAMVHGSG-G---QYR 361 (433)
T ss_pred EECCCCCEEEEEECCC------C---CceEEEEECCCCCeEEeecCCCCc---cCEEECCCCCEEEEEECCC-C---cee
Confidence 2222444 44432211 1 246899999888888876332110 1112212244555554422 1 136
Q ss_pred eEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 219 VHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 219 i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
++++|+.+...+.+...+ ........-+++.+++...... ...++.+++....
T Consensus 362 I~v~d~~~g~~~~Lt~~~-----~~~~p~~spdG~~i~~~s~~~g---~~~L~~~~~~g~~ 414 (433)
T PRK04922 362 IAVMDLSTGSVRTLTPGS-----LDESPSFAPNGSMVLYATREGG---RGVLAAVSTDGRV 414 (433)
T ss_pred EEEEECCCCCeEECCCCC-----CCCCceECCCCCEEEEEEecCC---ceEEEEEECCCCc
Confidence 999999998888665311 1111123335555555443221 2458888886543
No 84
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.77 E-value=20 Score=38.15 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=82.4
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p 188 (535)
.++|++|+.+++=+.+.. .+. .........++ +|++.-... -..++|.+|+.+..++.++.. +
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~dl~~g~~~~LT~~---~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPK---------GQPDIYLYDTNTKTLTQITNY---P 276 (419)
T ss_pred CEEEEEECCCCcEEEEec---CCC-cEEeeEECCCCCEEEEEEccC---------CCcEEEEEECCCCcEEEcccC---C
Confidence 489999998876555541 111 11111222344 454443311 136899999999999988632 1
Q ss_pred CCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCC---
Q 009435 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN--- 265 (535)
Q Consensus 189 ~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~--- 265 (535)
..-........+.+|++.-...+ ..+|+++|+.+.+.+.+...+. ... ...-+++.+++-.......
T Consensus 277 ~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 277 GIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred CccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCC
Confidence 11111111112446666644322 2579999999998877754322 112 3333444333333222111
Q ss_pred ccCcEEEEecCCCcEEEEeeC
Q 009435 266 LYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~~ 286 (535)
...+++++|++++.++.|...
T Consensus 347 ~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 347 NTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCcEEEEEECCCCCeEECCCC
Confidence 235799999999999888654
No 85
>PRK00178 tolB translocation protein TolB; Provisional
Probab=90.96 E-value=24 Score=37.41 Aligned_cols=147 Identities=10% Similarity=0.087 Sum_probs=77.6
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p 188 (535)
..+|++|+.+++-+.+.. .+.. .......-++ +|++.... .+ ..++|++|+.+...+.+... +
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g~-~~~~~~SpDG~~la~~~~~------~g---~~~Iy~~d~~~~~~~~lt~~---~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEGL-NGAPAWSPDGSKLAFVLSK------DG---NPEIYVMDLASRQLSRVTNH---P 286 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCCC-cCCeEECCCCCEEEEEEcc------CC---CceEEEEECCCCCeEEcccC---C
Confidence 579999999887766542 1111 1111222233 45433221 01 25799999999988877532 1
Q ss_pred CCCCceeEEeeC-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECC-EEEEEeccCCCCCc
Q 009435 189 SARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNL 266 (535)
Q Consensus 189 ~~r~~~s~~~~~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~-~iyv~GG~~~~~~~ 266 (535)
. ........-+ +.|++.....+ ..+++.+|+.+..++.+...+ .........-++ .|++... ...
T Consensus 287 ~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~-~~~--- 353 (430)
T PRK00178 287 A-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHR-QDG--- 353 (430)
T ss_pred C-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEc-cCC---
Confidence 1 1111112224 44554432221 246999999998888775321 111112222333 4444432 221
Q ss_pred cCcEEEEecCCCcEEEEee
Q 009435 267 YDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 267 ~~dv~~yd~~~~~W~~l~~ 285 (535)
..+++++|+.++.++.+..
T Consensus 354 ~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ceEEEEEECCCCCEEEccC
Confidence 2359999999998877754
No 86
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.75 E-value=30 Score=38.10 Aligned_cols=210 Identities=18% Similarity=0.173 Sum_probs=104.9
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccC-CC-C---CCCCceEEEEECCEEEEEcCCCCCCCCCcEEEE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG-SP-P---TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g-~~-P---~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++.||+.... +.++.+|..+. .|+.-.... .. + ......+.+..+++||+... -..++++
T Consensus 69 ~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l~AL 135 (527)
T TIGR03075 69 DGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARLVAL 135 (527)
T ss_pred CCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEEEEE
Confidence 5578774431 35899998875 687622100 00 0 00112334566888887432 2469999
Q ss_pred ECCCCe--EEeccccCCCCC-CCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCC---
Q 009435 116 DTSSHT--WISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNP--- 187 (535)
Q Consensus 116 d~~t~~--W~~~~~~g~~p~-~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~--- 187 (535)
|..|.+ |+.... .... .....+-++.++.||+-.... +......|+.||.++. .|+.-......
T Consensus 136 Da~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~------~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 136 DAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGG------EFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred ECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccc------ccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 998865 765321 1111 111223455678777743211 1112356889999876 47654321110
Q ss_pred ----------C---------CCCCce----eEEee--CCEEEEEecC----C-----CCCcccCceEEEECCCCc--EEE
Q 009435 188 ----------P---------SARDSH----TCSSW--KNKIIVIGGE----D-----GHDYYLSDVHILDTDTLT--WKE 231 (535)
Q Consensus 188 ----------p---------~~r~~~----s~~~~--~~~lyv~GG~----~-----~~~~~~~~i~~yd~~t~~--W~~ 231 (535)
+ ..+.+. ++++- .+.||+=-|. . +++.+.+.+..+|++|.+ |..
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 001110 12222 3456654443 1 223457789999999875 765
Q ss_pred eecCCCCCC--CceeeEEEE--ECCE---EEEEeccCCCCCccCcEEEEecCCCc
Q 009435 232 LNTSGMVLS--PRAGHSTVA--FGKN---LFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 232 v~~~g~~p~--~R~~hs~v~--~~~~---iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
-....+.-. .-....++- .+++ +++.+..+. .+|++|..+++
T Consensus 288 Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G------~~~vlDr~tG~ 336 (527)
T TIGR03075 288 QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG------FFYVLDRTNGK 336 (527)
T ss_pred eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc------eEEEEECCCCc
Confidence 432111100 001112222 2443 666666532 48888888764
No 87
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.36 E-value=28 Score=37.12 Aligned_cols=193 Identities=12% Similarity=0.109 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEEC-CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCe
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (535)
.++|++|..+++=+.+.. .+. ........-+ .+|++.-..++ ..++|.+|..+..++++.. .+..-...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~---~~~~d~~p 282 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITN---YPGIDVNG 282 (419)
T ss_pred CEEEEEECCCCcEEEEec---CCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEccc---CCCccCcc
Confidence 379999998887666541 111 1111112223 35555433222 3689999999998887652 22111111
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCc--cc
Q 009435 139 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDY--YL 216 (535)
Q Consensus 139 s~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~--~~ 216 (535)
.....+.+||+..... -..++|++|+.+...+++...+. ........++.|.+......... ..
T Consensus 283 ~~SPDG~~I~F~Sdr~---------g~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 283 NFVEDDKRIVFVSDRL---------GYPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred EECCCCCEEEEEECCC---------CCceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCC
Confidence 2122234566654421 12589999999999888764322 11222222344444433221110 12
Q ss_pred CceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEe
Q 009435 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 217 ~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (535)
.+++.+|+++..++.+...+ ....-...-+++.++|-.... -...++++++..+.=..+.
T Consensus 349 ~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~---~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 349 FNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG---NQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred cEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC---CcEEEEEEecCCCeeEEee
Confidence 57999999999998886522 111222333454444433221 1345888888765444443
No 88
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.70 E-value=30 Score=36.47 Aligned_cols=194 Identities=18% Similarity=0.181 Sum_probs=100.0
Q ss_pred cceEEEEEcCCCeEEEeeccCCCCCCCC-ceEEE-EECCE-EEEEcCCCCCCCCCcEEEEECCCC-----eEEeccccCC
Q 009435 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRD-SHSCT-TVGEN-LYVFGGTDGMNPLRDLHILDTSSH-----TWISPSVRGE 130 (535)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~-~hs~~-~~~~~-Iyv~GG~~~~~~~~~~~~yd~~t~-----~W~~~~~~g~ 130 (535)
...++++...+..-....+- ..+.... ...+. .-+++ |+|.-.. +.. .+++|.+|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvf-e~~~~~~~~~~~~~s~d~~~l~i~~~~-~~~-~s~v~~~d~~~~~~~~~~~~~l~~--- 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVF-EEPDEPFWFVSVSRSKDGRYLFISSSS-GTS-ESEVYLLDLDDGGSPDAKPKLLSP--- 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEE-C-TTCTTSEEEEEE-TTSSEEEEEEES-SSS-EEEEEEEECCCTTTSS-SEEEEEE---
T ss_pred CcEEEEEECCCChHhCeeEE-eecCCCcEEEEEEecCcccEEEEEEEc-ccc-CCeEEEEeccccCCCcCCcEEEeC---
Confidence 56788888877654311111 1122222 22222 22344 3433322 222 478999999875 7877652
Q ss_pred CCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc---EEEeccCCCCCCC-CCceeEEeeCCEEEEE
Q 009435 131 GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATTSGNPPSA-RDSHTCSSWKNKIIVI 206 (535)
Q Consensus 131 ~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~---W~~~~~~~~~p~~-r~~~s~~~~~~~lyv~ 206 (535)
...-..+.+...++.+|+.... ......+..+++.... |..+-. .+.. ..--.+...++.|++.
T Consensus 275 -~~~~~~~~v~~~~~~~yi~Tn~--------~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 275 -REDGVEYYVDHHGDRLYILTND--------DAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp -SSSS-EEEEEEETTEEEEEE-T--------T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEE
T ss_pred -CCCceEEEEEccCCEEEEeeCC--------CCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEE
Confidence 1222223344558899998662 1224567888887664 774321 1111 1223344558888877
Q ss_pred ecCCCCCcccCceEEEECC-CCcEEEeecCCCCCCCceee-EEEEE---CCE-EEEEeccCCCCCccCcEEEEecCCCcE
Q 009435 207 GGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGH-STVAF---GKN-LFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (535)
Q Consensus 207 GG~~~~~~~~~~i~~yd~~-t~~W~~v~~~g~~p~~R~~h-s~v~~---~~~-iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (535)
-=.+ ....|.++|+. +..-..+.. |. .+. ..... .+. .|.+.++.. -..+|.||+.+++.
T Consensus 343 ~~~~----~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~~~~~~~~~~~~~ss~~~----P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 343 YREN----GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVSGDFDSDELRFSYSSFTT----PPTVYRYDLATGEL 408 (414)
T ss_dssp EEET----TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEES-TT-SEEEEEEEETTE----EEEEEEEETTTTCE
T ss_pred EEEC----CccEEEEEECCCCcEEeeecC----Cc--ceEEeccCCCCCCCEEEEEEeCCCC----CCEEEEEECCCCCE
Confidence 5433 24568999998 443333332 22 221 11211 233 555666643 34699999999988
Q ss_pred EEEe
Q 009435 281 TKVI 284 (535)
Q Consensus 281 ~~l~ 284 (535)
+.+.
T Consensus 409 ~~~k 412 (414)
T PF02897_consen 409 TLLK 412 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 89
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.34 E-value=19 Score=33.87 Aligned_cols=193 Identities=12% Similarity=0.114 Sum_probs=85.4
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++.+..++.++++|+.+ +.+.+||..+.+-.... .+ ..... ..+... +++.+++++.+ ..+.+|
T Consensus 14 ~~~~~~~~~~l~~~~~~------g~i~i~~~~~~~~~~~~-~~--~~~~i-~~~~~~~~~~~l~~~~~~-----~~i~i~ 78 (289)
T cd00200 14 CVAFSPDGKLLATGSGD------GTIKVWDLETGELLRTL-KG--HTGPV-RDVAASADGTYLASGSSD-----KTIRLW 78 (289)
T ss_pred EEEEcCCCCEEEEeecC------cEEEEEEeeCCCcEEEE-ec--CCcce-eEEEECCCCCEEEEEcCC-----CeEEEE
Confidence 33343333456666642 45777887665422211 11 11111 122222 34466666643 468888
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEEC-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
|..+.+....- . .....-.++.... +.+++.|+. ...+.+||+.+..-...-. .....-.
T Consensus 79 ~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~~~~~----~~~~~i~ 139 (289)
T cd00200 79 DLETGECVRTL---T-GHTSYVSSVAFSPDGRILSSSSR-----------DKTIKVWDVETGKCLTTLR----GHTDWVN 139 (289)
T ss_pred EcCcccceEEE---e-ccCCcEEEEEEcCCCCEEEEecC-----------CCeEEEEECCCcEEEEEec----cCCCcEE
Confidence 88775322111 0 0111112223333 356665552 2457788887544322211 1111122
Q ss_pred eEEeeC-CEEEEEecCCCCCcccCceEEEECCCCcE-EEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEE
Q 009435 195 TCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTW-KELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (535)
Q Consensus 195 s~~~~~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W-~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~ 271 (535)
++.... +.+++.|..+ ..+.+||+.+.+- ..+.. ....-.++... +++.+++++.. ..+.
T Consensus 140 ~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~------~~i~ 202 (289)
T cd00200 140 SVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATLTG-----HTGEVNSVAFSPDGEKLLSSSSD------GTIK 202 (289)
T ss_pred EEEEcCcCCEEEEEcCC------CcEEEEEccccccceeEec-----CccccceEEECCCcCEEEEecCC------CcEE
Confidence 233333 4455544422 3488899875432 22211 11111222333 33355566542 3489
Q ss_pred EEecCCCcE
Q 009435 272 MIDVDSGLW 280 (535)
Q Consensus 272 ~yd~~~~~W 280 (535)
+||+.+...
T Consensus 203 i~d~~~~~~ 211 (289)
T cd00200 203 LWDLSTGKC 211 (289)
T ss_pred EEECCCCce
Confidence 999876443
No 90
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.98 E-value=31 Score=35.79 Aligned_cols=150 Identities=18% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCe--EEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCC-
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS- 119 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t- 119 (535)
++++|+.. ....++.+|+.+.+ |...... -....+.....-+++||+-.. ++ .+++||..+
T Consensus 68 dg~v~~~~-------~~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G 131 (370)
T COG1520 68 DGTVYVGT-------RDGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTG 131 (370)
T ss_pred CCeEEEec-------CCCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecc-cc-----eEEEEECCCC
Confidence 45687751 11279999999875 9874321 001111122222677665443 32 799999965
Q ss_pred -CeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeE
Q 009435 120 -HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTC 196 (535)
Q Consensus 120 -~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~ 196 (535)
..|...... . ++..-..+..++.+|+-.. .+.++++|..+. .|+.-.... . ..+.....
T Consensus 132 ~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s~------------~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~ 193 (370)
T COG1520 132 TLVWSRNVGG---S-PYYASPPVVGDGTVYVGTD------------DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSP 193 (370)
T ss_pred cEEEEEecCC---C-eEEecCcEEcCcEEEEecC------------CCeEEEEEccCCcEEEEEecCCc-c-ccccccCc
Confidence 458764421 1 3333344444556665421 356888888754 687554221 1 11222222
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCC--cEEE
Q 009435 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKE 231 (535)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~ 231 (535)
....+.+|+-.. + . ...++.+|++++ .|+.
T Consensus 194 ~~~~~~vy~~~~-~---~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 194 AIASGTVYVGSD-G---Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred eeecceEEEecC-C---C-cceEEEEEccCCcEeeee
Confidence 244555665422 1 1 226899999765 5774
No 91
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.92 E-value=23 Score=34.23 Aligned_cols=193 Identities=14% Similarity=0.103 Sum_probs=99.8
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~y 171 (535)
++.+|+.-- .-..++++|+.+.+-..... +. -.+++.. ++.+|+... ..+.++
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~-------------~~~~~~ 65 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS-------------GGIAVV 65 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET-------------TCEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc-------------CceEEE
Confidence 467777742 23579999999987765442 22 2334444 578888765 234566
Q ss_pred ECCCccEEEeccC--CCCCCCCCceeEEeeCCEEEEEecCCCCCccc--CceEEEECCCCcEEEeecCCCCCCCceeeEE
Q 009435 172 NTETFVWKRATTS--GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYL--SDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (535)
Q Consensus 172 d~~t~~W~~~~~~--~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~--~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~ 247 (535)
|+.+.+++.+... +..+..+..-.++.-++.||+---........ ..++++++. .+.+.+... ..+. ..+
T Consensus 66 d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~----~~~p-NGi 139 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG----LGFP-NGI 139 (246)
T ss_dssp ETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE----ESSE-EEE
T ss_pred ecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC----cccc-cce
Confidence 9999999888643 11122222223333477888753322211112 569999999 666655431 1111 233
Q ss_pred EEE-C-CEEEEEeccCCCCCccCcEEEEecCCCc--EEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccC
Q 009435 248 VAF-G-KNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALD 323 (535)
Q Consensus 248 v~~-~-~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 323 (535)
+.. + +.+|+.-- ....||+|++.... +.........+......-+.+++ .++.|||..-. -+
T Consensus 140 ~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD--~~G~l~va~~~------~~ 205 (246)
T PF08450_consen 140 AFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD--SDGNLWVADWG------GG 205 (246)
T ss_dssp EEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB--TTS-EEEEEET------TT
T ss_pred EECCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc--CCCCEEEEEcC------CC
Confidence 333 3 35777432 23459999996433 43222111111111123344443 46788886211 12
Q ss_pred cEEEEecc
Q 009435 324 DMYYLYTG 331 (535)
Q Consensus 324 dv~~l~~~ 331 (535)
.+++++..
T Consensus 206 ~I~~~~p~ 213 (246)
T PF08450_consen 206 RIVVFDPD 213 (246)
T ss_dssp EEEEEETT
T ss_pred EEEEECCC
Confidence 46666644
No 92
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.20 E-value=29 Score=34.39 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=94.3
Q ss_pred EEEE-ECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeee
Q 009435 89 SCTT-VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYND 167 (535)
Q Consensus 89 s~~~-~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~ 167 (535)
+... .++.+|.--|.-+. +.+.++|+.|++-.+.. ++|..-++=+++..+++||..-=. ...
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk-----------~~~ 111 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK-----------EGT 111 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS-----------SSE
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec-----------CCe
Confidence 3444 57899998887554 56889999998765444 577777888999999999998431 356
Q ss_pred EEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEE-eecC-CCCCCCceee
Q 009435 168 LYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTS-GMVLSPRAGH 245 (535)
Q Consensus 168 v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-v~~~-g~~p~~R~~h 245 (535)
.++||..+.+ .+.. .+.+..+-.++..+..||+--| ++.++.+||++.+-.. +... ...|.. .--
T Consensus 112 ~f~yd~~tl~--~~~~---~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~-~LN 178 (264)
T PF05096_consen 112 GFVYDPNTLK--KIGT---FPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVS-NLN 178 (264)
T ss_dssp EEEEETTTTE--EEEE---EE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE----EE
T ss_pred EEEEccccce--EEEE---EecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECC-CcE
Confidence 7899998653 3321 2334567788877888888866 3569999998765332 2211 001111 112
Q ss_pred EEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 246 STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 246 s~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
-+-.+++.||.== =..+.|.+.|++++.-...
T Consensus 179 ELE~i~G~IyANV------W~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 179 ELEYINGKIYANV------WQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEEEETTEEEEEE------TTSSEEEEEETTT-BEEEE
T ss_pred eEEEEcCEEEEEe------CCCCeEEEEeCCCCeEEEE
Confidence 2334456555421 1246799999999975544
No 93
>PRK04922 tolB translocation protein TolB; Provisional
Probab=87.32 E-value=44 Score=35.57 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=76.4
Q ss_pred CCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCC
Q 009435 109 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (535)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~ 187 (535)
...++++|+.+++-+.+. ..+.. .......-++ +|++..... + ..+++++|+.+...+.+....
T Consensus 227 ~~~l~~~dl~~g~~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~------g---~~~Iy~~d~~~g~~~~lt~~~-- 291 (433)
T PRK04922 227 RSAIYVQDLATGQRELVA---SFRGI-NGAPSFSPDGRRLALTLSRD------G---NPEIYVMDLGSRQLTRLTNHF-- 291 (433)
T ss_pred CcEEEEEECCCCCEEEec---cCCCC-ccCceECCCCCEEEEEEeCC------C---CceEEEEECCCCCeEECccCC--
Confidence 357999999888766554 22211 1111222234 454432211 1 257999999988877665221
Q ss_pred CCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEEC-CEEEEEeccCCCCCc
Q 009435 188 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNL 266 (535)
Q Consensus 188 p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~-~~iyv~GG~~~~~~~ 266 (535)
. ........-+++.+++...... ..+++.+|..+..++.+...+.. .......-+ +.|++..+. . .
T Consensus 292 -~-~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g~~----~~~~~~SpDG~~Ia~~~~~-~-~-- 358 (433)
T PRK04922 292 -G-IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQGNY----NARASVSPDGKKIAMVHGS-G-G-- 358 (433)
T ss_pred -C-CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCCCC----ccCEEECCCCCEEEEEECC-C-C--
Confidence 1 1111112224443444322111 24699999988888877542211 111122223 445554432 1 1
Q ss_pred cCcEEEEecCCCcEEEEe
Q 009435 267 YDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 267 ~~dv~~yd~~~~~W~~l~ 284 (535)
...++++|+.++....+.
T Consensus 359 ~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred ceeEEEEECCCCCeEECC
Confidence 136999999988887664
No 94
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=87.23 E-value=32 Score=33.82 Aligned_cols=261 Identities=17% Similarity=0.217 Sum_probs=112.7
Q ss_pred CCEEEE--ECCcCCCCCCcceEEEEEcC-CCeEEEeeccCCC----CC-CCCceEEEEECCEEEEEcCC--CCCCCCCcE
Q 009435 43 GRFLYV--FGGYGKDNCQTNQVHVFDTV-NQTWSQPVIKGSP----PT-PRDSHSCTTVGENLYVFGGT--DGMNPLRDL 112 (535)
Q Consensus 43 ~~~Iyi--~GG~~~~~~~~~~~~~yd~~-t~~W~~l~~~g~~----P~-~R~~hs~~~~~~~Iyv~GG~--~~~~~~~~~ 112 (535)
++.||. ++|....-..+.-.|+-... .++|+.++.-.+. |. .-...++-++++++|.+=-. -....+...
T Consensus 25 ~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~ 104 (367)
T PF12217_consen 25 DNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRA 104 (367)
T ss_dssp TTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEE
T ss_pred cCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhh
Confidence 345553 34443332233445555543 4689876543222 22 12345677889999877432 122344556
Q ss_pred EEEE---CCCCeEEeccccCCCCC-------CCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC-----CCcc
Q 009435 113 HILD---TSSHTWISPSVRGEGPE-------AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT-----ETFV 177 (535)
Q Consensus 113 ~~yd---~~t~~W~~~~~~g~~p~-------~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~-----~t~~ 177 (535)
+.|| ...+.|++.+.. ..|. ...-|+.+.+++.-|.+|=...+. ...-. .+..|.. ....
T Consensus 105 ~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~---sPRe~-G~~yfs~~~~sp~~~v 179 (367)
T PF12217_consen 105 ELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV---SPREL-GFLYFSDAFASPGVFV 179 (367)
T ss_dssp EEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SS---SS-EE-EEEEETTTTT-TT--E
T ss_pred hhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCC---Cccee-eEEEecccccCCccee
Confidence 6666 457889764432 2222 456688899998877776422111 11111 1222211 1111
Q ss_pred EEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCC--ceeeEEEEECCEEE
Q 009435 178 WKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP--RAGHSTVAFGKNLF 255 (535)
Q Consensus 178 W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~--R~~hs~v~~~~~iy 255 (535)
=+.+.. .........+.-.+++.||+.--.......-..+++-+.....|..+.. |.. -...-.+.++|.||
T Consensus 180 rr~i~s--ey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf----p~nvHhtnlPFakvgD~l~ 253 (367)
T PF12217_consen 180 RRIIPS--EYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF----PNNVHHTNLPFAKVGDVLY 253 (367)
T ss_dssp EEE--G--GG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEE
T ss_pred eeechh--hhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc----cccccccCCCceeeCCEEE
Confidence 122221 1222223345556799999875333222344568888888889999985 221 12223577899999
Q ss_pred EEeccCCCCC------------ccCcEEE-------EecCCCcEEEEeeC---CCCCCCceeeeeeeecccCCCEE-EEE
Q 009435 256 VFGGFTDSQN------------LYDDLYM-------IDVDSGLWTKVITT---GEGPSARFSVAGDCLDPLKGGVL-VFI 312 (535)
Q Consensus 256 v~GG~~~~~~------------~~~dv~~-------yd~~~~~W~~l~~~---~~~p~~r~~~~~~~~~~~~~~~l-~v~ 312 (535)
+||-....++ .....+. +.+++-+|..+... +.....-.+..++|+ .++.| |+|
T Consensus 254 mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~---KD~~lyy~F 330 (367)
T PF12217_consen 254 MFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVV---KDGWLYYIF 330 (367)
T ss_dssp EEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEE---ETTEEEEEE
T ss_pred EEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEE---ECCEEEEEe
Confidence 9996432111 1111222 24455567766543 233333444555554 67776 567
Q ss_pred cccCC
Q 009435 313 GGCNK 317 (535)
Q Consensus 313 GG~~~ 317 (535)
||.+.
T Consensus 331 GgED~ 335 (367)
T PF12217_consen 331 GGEDF 335 (367)
T ss_dssp EEB-S
T ss_pred cCccc
Confidence 88753
No 95
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.81 E-value=37 Score=34.12 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=69.0
Q ss_pred cceEEEEEcCCCe----EEEeeccCCCCCCCCceEEEE----ECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCC
Q 009435 59 TNQVHVFDTVNQT----WSQPVIKGSPPTPRDSHSCTT----VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGE 130 (535)
Q Consensus 59 ~~~~~~yd~~t~~----W~~l~~~g~~P~~R~~hs~~~----~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~ 130 (535)
.+.++.||+++++ |+. +-.-+..-++-.+-. ++++||+.=+ ++... --+|..|..+..-+++. +
T Consensus 77 YSHVH~yd~e~~~VrLLWke---sih~~~~WaGEVSdIlYdP~~D~LLlAR~-DGh~n-LGvy~ldr~~g~~~~L~---~ 148 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKE---SIHDKTKWAGEVSDILYDPYEDRLLLARA-DGHAN-LGVYSLDRRTGKAEKLS---S 148 (339)
T ss_pred cceEEEEEcCCCeEEEEEec---ccCCccccccchhheeeCCCcCEEEEEec-CCcce-eeeEEEcccCCceeecc---C
Confidence 4578999988774 665 112232222222222 2577877654 22222 35888888888877766 2
Q ss_pred CCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE--EEeccC----CCCCCCCCceeEEeeCCEEE
Q 009435 131 GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW--KRATTS----GNPPSARDSHTCSSWKNKII 204 (535)
Q Consensus 131 ~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W--~~~~~~----~~~p~~r~~~s~~~~~~~ly 204 (535)
.|.+ -.+...+..+|-+ +. -..-.+.+++||+.+++| +..... +.....|....++...+++|
T Consensus 149 ~ps~---KG~~~~D~a~F~i----~~----~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~f 217 (339)
T PF09910_consen 149 NPSL---KGTLVHDYACFGI----NN----FHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLF 217 (339)
T ss_pred CCCc---CceEeeeeEEEec----cc----cccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEE
Confidence 2332 1222333333321 11 111257899999999999 443321 22233444555666677776
Q ss_pred EE
Q 009435 205 VI 206 (535)
Q Consensus 205 v~ 206 (535)
.|
T Consensus 218 aF 219 (339)
T PF09910_consen 218 AF 219 (339)
T ss_pred EE
Confidence 65
No 96
>PRK13684 Ycf48-like protein; Provisional
Probab=86.48 E-value=42 Score=34.49 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=105.4
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCC-CceEEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPR-DSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R-~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
+...+.+..+++|-. ..++.=+-.-.+|++.... .|... .-.+....++..|+.|.. ..+++=+
T Consensus 51 v~F~d~~~g~avG~~-------G~il~T~DgG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~ 115 (334)
T PRK13684 51 IAFTDPNHGWLVGSN-------RTLLETNDGGETWEERSLD--LPEENFRLISISFKGDEGWIVGQP------SLLLHTT 115 (334)
T ss_pred EEEeCCCcEEEEECC-------CEEEEEcCCCCCceECccC--CcccccceeeeEEcCCcEEEeCCC------ceEEEEC
Confidence 334344557777632 2344333344689986432 22222 222333345566776531 2233332
Q ss_pred CCCCeEEeccccCCCCCCCCCeEEEEEC-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCcee
Q 009435 117 TSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (535)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s 195 (535)
-.-.+|+++......|. .......++ +.+|+.|. ...+++-+-.-.+|+.+... ..-..+.
T Consensus 116 DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~------------~G~i~~S~DgG~tW~~~~~~----~~g~~~~ 177 (334)
T PRK13684 116 DGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATN------------VGAIYRTTDGGKNWEALVED----AAGVVRN 177 (334)
T ss_pred CCCCCCeEccCCcCCCC--CceEEEEECCCcceeeec------------cceEEEECCCCCCceeCcCC----CcceEEE
Confidence 23358988753211222 222333333 45666655 23456656667899998632 2223344
Q ss_pred EEeeCCEEEEEecCCCCCcccCceEEE-ECCCCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCcEEEE
Q 009435 196 CSSWKNKIIVIGGEDGHDYYLSDVHIL-DTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 196 ~~~~~~~lyv~GG~~~~~~~~~~i~~y-d~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
+....+..++..|..+. ++.- |....+|+.+.. +..+..++++. -++.++++|... ..++
T Consensus 178 i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~ 239 (334)
T PRK13684 178 LRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG--------QIRF 239 (334)
T ss_pred EEECCCCeEEEEeCCce------EEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC--------EEEE
Confidence 44444444444443322 3322 344567998854 33344444444 357788887532 2233
Q ss_pred --ecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcc
Q 009435 274 --DVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (535)
Q Consensus 274 --d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (535)
+-.-.+|+.+... . ........+..+ ..++.+++.|.
T Consensus 240 ~s~d~G~sW~~~~~~-~-~~~~~~l~~v~~--~~~~~~~~~G~ 278 (334)
T PRK13684 240 NDPDDLESWSKPIIP-E-ITNGYGYLDLAY--RTPGEIWAGGG 278 (334)
T ss_pred ccCCCCCccccccCC-c-cccccceeeEEE--cCCCCEEEEcC
Confidence 2233589876421 1 112222232222 23567777764
No 97
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.23 E-value=49 Score=35.00 Aligned_cols=227 Identities=13% Similarity=0.115 Sum_probs=106.8
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCC--CceEEEEECCEEEEEcCCCCCCCCCcEEEEECC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPR--DSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R--~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
.+.+.-+++|-.+ .+..=+-.-.+|.+..........+ ...++...++..|++|-. ..++.=+-.
T Consensus 98 ~d~~~GwAVG~~G-------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------G~il~T~Dg 164 (398)
T PLN00033 98 DDPTHGFLLGTRQ-------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------AILLHTSDG 164 (398)
T ss_pred CCCCEEEEEcCCC-------EEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc------eEEEEEcCC
Confidence 3455677877632 2333334456899854211111111 234455567788888632 123332323
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEEC-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC-CCCCCC-----
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-NPPSAR----- 191 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~-~~p~~r----- 191 (535)
-.+|+.+.....+|.. .+....++ +.+++.|.. ..+++-+-.-.+|+.+.... ..+..+
T Consensus 165 G~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~ 230 (398)
T PLN00033 165 GETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSG 230 (398)
T ss_pred CCCceECccccCCCCC--ceEEEEECCCceEEEecc------------ceEEEECCCCCCceEccccccccccccccccc
Confidence 4789887643222333 23334444 457777752 23566555667899872110 001111
Q ss_pred ---------CceeEEee-CCEEEEEecCCCCCcccCceEEEECC-CCcEEEeecCCCCCCCceeeEE-EEECCEEEEEec
Q 009435 192 ---------DSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHST-VAFGKNLFVFGG 259 (535)
Q Consensus 192 ---------~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~v~~~g~~p~~R~~hs~-v~~~~~iyv~GG 259 (535)
...++... ++.++++|-. ..+++-+-. ...|+.+.. +.++...++ ...++.++++|.
T Consensus 231 ~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-------G~~~~s~d~G~~~W~~~~~----~~~~~l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 231 ISGASYYTGTFSTVNRSPDGDYVAVSSR-------GNFYLTWEPGQPYWQPHNR----ASARRIQNMGWRADGGLWLLTR 299 (398)
T ss_pred ccccceeccceeeEEEcCCCCEEEEECC-------ccEEEecCCCCcceEEecC----CCccceeeeeEcCCCCEEEEeC
Confidence 11111211 3445555432 123333333 334898874 333333333 345677888775
Q ss_pred cCCCCCccCcEEEEecCCCcEE--EEeeCCCCCCCceeeeeeeecccCCCEEEEEccc
Q 009435 260 FTDSQNLYDDLYMIDVDSGLWT--KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 315 (535)
Q Consensus 260 ~~~~~~~~~dv~~yd~~~~~W~--~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (535)
.. .++.-+.....|+ .+..... +..++....+.. ..++.+++.|..
T Consensus 300 ~G-------~l~~S~d~G~~~~~~~f~~~~~-~~~~~~l~~v~~--~~d~~~~a~G~~ 347 (398)
T PLN00033 300 GG-------GLYVSKGTGLTEEDFDFEEADI-KSRGFGILDVGY--RSKKEAWAAGGS 347 (398)
T ss_pred Cc-------eEEEecCCCCcccccceeeccc-CCCCcceEEEEE--cCCCcEEEEECC
Confidence 42 2444444444453 1221111 222333333333 357788888754
No 98
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.19 E-value=51 Score=35.14 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=77.2
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p 188 (535)
..++++|+.+++-+.+.. .+.. .......-++ +|++..... + ..++|++|+.+...+.+... .
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~-~~~~~~SPDG~~La~~~~~~------g---~~~I~~~d~~tg~~~~lt~~---~ 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRH-NGAPAFSPDGSKLAFALSKT------G---SLNLYVMDLASGQIRQVTDG---R 286 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCC-cCCeEECCCCCEEEEEEcCC------C---CcEEEEEECCCCCEEEccCC---C
Confidence 579999998876655441 1111 1111222244 455443210 0 23599999999888777532 1
Q ss_pred CCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccC
Q 009435 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (535)
Q Consensus 189 ~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~ 268 (535)
.. .......-+++.+++...... ..++|.+|+.+...+.+...+ .........-+++.+++.+.... ..
T Consensus 287 ~~-~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---~~ 355 (429)
T PRK03629 287 SN-NTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---QQ 355 (429)
T ss_pred CC-cCceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---Cc
Confidence 11 111112224444444332211 247999999888777664321 11112222334444444333221 24
Q ss_pred cEEEEecCCCcEEEEee
Q 009435 269 DLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 269 dv~~yd~~~~~W~~l~~ 285 (535)
+++++|+.++.+..+..
T Consensus 356 ~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 356 HIAKQDLATGGVQVLTD 372 (429)
T ss_pred eEEEEECCCCCeEEeCC
Confidence 69999999999887764
No 99
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=85.99 E-value=37 Score=33.41 Aligned_cols=193 Identities=15% Similarity=0.077 Sum_probs=101.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECC-----CCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTS-----SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDL 168 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~-----t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v 168 (535)
.+++|++.|..+. .++.|... .+...+.- .+|.+-.|.+.+++++.+|.--. -.+.|
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~-----------~s~~I 91 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY-----------NSRNI 91 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec-----------CCceE
Confidence 4678988886544 45555321 11221111 36677778888889998887533 25789
Q ss_pred EEEECCCccEE---EeccCCC---CCCCCCcee---EEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCC
Q 009435 169 YILNTETFVWK---RATTSGN---PPSARDSHT---CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 239 (535)
Q Consensus 169 ~~yd~~t~~W~---~~~~~~~---~p~~r~~~s---~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p 239 (535)
.+||+.+..-. .++..+. .|....+++ .++.++-|+|+-....... .=-+-.+|+.+..-...=.+. .+
T Consensus 92 vkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T~-~~ 169 (250)
T PF02191_consen 92 VKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNTS-YP 169 (250)
T ss_pred EEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEec-cC
Confidence 99999987655 3321111 122222222 3334555666644332210 112455677655422211111 22
Q ss_pred CCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEE
Q 009435 240 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (535)
Q Consensus 240 ~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~ 312 (535)
.+.. ..+.++-+.||++-...... ..=.+.||+.+++=..+... .+ .++.....+-..+.+.+||+.
T Consensus 170 k~~~-~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~--f~-~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 170 KRSA-GNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIP--FP-NPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred chhh-cceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceeee--ec-cccCceEeeeECCCCCeEEEE
Confidence 2222 23566678888887765432 22258999998865544332 12 222233333334567778875
No 100
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=85.78 E-value=31 Score=32.38 Aligned_cols=182 Identities=9% Similarity=0.053 Sum_probs=82.2
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCC-CceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPR-DSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R-~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
..+++++.+ ..+.+||..+.+....- .... .-.++... ++++++.|+.+ ..+.+||+.+.+-
T Consensus 64 ~~l~~~~~~------~~i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~ 127 (289)
T cd00200 64 TYLASGSSD------KTIRLWDLETGECVRTL-----TGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKC 127 (289)
T ss_pred CEEEEEcCC------CeEEEEEcCcccceEEE-----eccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEE
Confidence 355556542 46888888765332211 1111 11222222 34566666532 4688899876543
Q ss_pred EeccccCCCCCCCCCeEEEEEC-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE-EEeccCCCCCCCCCceeEEee-
Q 009435 123 ISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSARDSHTCSSW- 199 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W-~~~~~~~~~p~~r~~~s~~~~- 199 (535)
...- . .....-.++.... +.+++.|.. ...+.+||+.+.+- ..+.. . ...-.++...
T Consensus 128 ~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~-----------~~~i~i~d~~~~~~~~~~~~----~-~~~i~~~~~~~ 187 (289)
T cd00200 128 LTTL---R-GHTDWVNSVAFSPDGTFVASSSQ-----------DGTIKLWDLRTGKCVATLTG----H-TGEVNSVAFSP 187 (289)
T ss_pred EEEe---c-cCCCcEEEEEEcCcCCEEEEEcC-----------CCcEEEEEccccccceeEec----C-ccccceEEECC
Confidence 2211 0 1111122333333 344444431 23577888764332 12210 1 1111223333
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEEC-CEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~-~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
++..+++++.+ ..+.+||+.+.+....-. .....-.++.... +.+++.++.. ..+.+||+.+.
T Consensus 188 ~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~------~~i~i~~~~~~ 251 (289)
T cd00200 188 DGEKLLSSSSD------GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLLASGSED------GTIRVWDLRTG 251 (289)
T ss_pred CcCEEEEecCC------CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEEEEEcCC------CcEEEEEcCCc
Confidence 34456666542 348889987644332211 1111222333333 4555555422 34889998764
No 101
>PTZ00421 coronin; Provisional
Probab=85.22 E-value=62 Score=35.28 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=72.3
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEE-EECCEEEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 95 ~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
+.+++.||.+ ..+.+||+.+.+-...- . .... .-.+++ ..++.+++.|+. ...+.+||+
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l-~-~h~~--~V~sla~spdG~lLatgs~-----------Dg~IrIwD~ 197 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVI-K-CHSD--QITSLEWNLDGSLLCTTSK-----------DKKLNIIDP 197 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEE-c-CCCC--ceEEEEEECCCCEEEEecC-----------CCEEEEEEC
Confidence 4577777754 35788888876532211 0 1111 111222 225677777773 245778898
Q ss_pred CCccEE-EeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCCceeeEEEEE
Q 009435 174 ETFVWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAF 250 (535)
Q Consensus 174 ~t~~W~-~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~R~~hs~v~~ 250 (535)
.+.+-. .+.. ....+........++..++..|.+.. .-..+..||+.+.. ...... .. .....+..+
T Consensus 198 rsg~~v~tl~~---H~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~p~~~~~~----d~-~~~~~~~~~ 267 (493)
T PTZ00421 198 RDGTIVSSVEA---HASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMASPYSTVDL----DQ-SSALFIPFF 267 (493)
T ss_pred CCCcEEEEEec---CCCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCCceeEecc----CC-CCceEEEEE
Confidence 876422 1211 11111111111223344455554321 12458889986543 111110 00 011122222
Q ss_pred --CCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 251 --GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 251 --~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
++.++++||..+ ..|.+||+.++.....
T Consensus 268 d~d~~~L~lggkgD-----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 268 DEDTNLLYIGSKGE-----GNIRCFELMNERLTFC 297 (493)
T ss_pred cCCCCEEEEEEeCC-----CeEEEEEeeCCceEEE
Confidence 456666776433 2388999988775544
No 102
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.95 E-value=21 Score=36.82 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=86.7
Q ss_pred cccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCe--EEEeeccCCCCC-CCCceEEEEE-CCEEEEEcCCCCCC
Q 009435 32 RWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPT-PRDSHSCTTV-GENLYVFGGTDGMN 107 (535)
Q Consensus 32 R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W~~l~~~g~~P~-~R~~hs~~~~-~~~Iyv~GG~~~~~ 107 (535)
-+-|.+...++++++|+.-= -.+.+++|+..... ....... ..|. .--.|.+..- +..+||..-.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~---- 212 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL---- 212 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT----
T ss_pred ccceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC----
Confidence 35688888888888888521 12568888887655 5442211 1222 1222333332 3578998753
Q ss_pred CCCcEEEEECC--CCeEEeccccCCCCCCC----CCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEEC--CCcc
Q 009435 108 PLRDLHILDTS--SHTWISPSVRGEGPEAR----EGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNT--ETFV 177 (535)
Q Consensus 108 ~~~~~~~yd~~--t~~W~~~~~~g~~p~~r----~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~--~t~~ 177 (535)
.+.+.+|+.. +..++.......+|... ..+.++.. +..||+--.- .+.|.+|++ .+.+
T Consensus 213 -s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----------~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 213 -SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----------SNSISVFDLDPATGT 280 (345)
T ss_dssp -TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----------TTEEEEEEECTTTTT
T ss_pred -CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----------CCEEEEEEEecCCCc
Confidence 3556666655 77776655433333221 22233333 3467886431 355666766 4456
Q ss_pred EEEecc---CCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEE--ECCCCcEEEeec
Q 009435 178 WKRATT---SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHIL--DTDTLTWKELNT 234 (535)
Q Consensus 178 W~~~~~---~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~y--d~~t~~W~~v~~ 234 (535)
.+.+.. .+.. ||. .++...++.|||.+. .. +.+.+| |.+++.+..+..
T Consensus 281 l~~~~~~~~~G~~--Pr~-~~~s~~g~~l~Va~~-~s-----~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 281 LTLVQTVPTGGKF--PRH-FAFSPDGRYLYVANQ-DS-----NTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEEEESSSS--EEE-EEE-TTSSEEEEEET-TT-----TEEEEEEEETTTTEEEEEEE
T ss_pred eEEEEEEeCCCCC--ccE-EEEeCCCCEEEEEec-CC-----CeEEEEEEeCCCCcEEEecc
Confidence 555532 2222 221 222223555666443 22 335544 678888888763
No 103
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=84.92 E-value=25 Score=30.48 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=57.9
Q ss_pred EEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEE
Q 009435 91 TTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (535)
Q Consensus 91 ~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~ 170 (535)
+.++|-+|-..-. .......+.+||..+.+|+.++..............+.++|+|-++.-... .....-++|+
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~-----~~~~~~~iWv 75 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQ-----GEPDSIDIWV 75 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCC-----CCcceEEEEE
Confidence 3567777766554 334457899999999999887742123455566778888999888755211 1123467888
Q ss_pred EE-CCCccEEEecc
Q 009435 171 LN-TETFVWKRATT 183 (535)
Q Consensus 171 yd-~~t~~W~~~~~ 183 (535)
++ ..+..|.+...
T Consensus 76 LeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 76 LEDYEKQEWSKKHI 89 (129)
T ss_pred eeccccceEEEEEE
Confidence 84 56788998754
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=84.62 E-value=41 Score=32.70 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=73.0
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
+...++++.+|+.++. .+.+.+||..+.+....-.. ...+ ..++.. ++.+|+.++.+ ..+.+
T Consensus 36 l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~ 99 (300)
T TIGR03866 36 ITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANEDD-----NLVTV 99 (300)
T ss_pred eEECCCCCEEEEEECC------CCeEEEEECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCCC-----CeEEE
Confidence 4444566667777653 24688999988766542111 1111 122222 34576665432 46899
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
||+.+.+-...- +....-.+++. .++.+++++... .+.++.+|..+.+-......+..| .
T Consensus 100 ~d~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~~~----~ 160 (300)
T TIGR03866 100 IDIETRKVLAEI-----PVGVEPEGMAVSPDGKIVVNTSET----------TNMAHFIDTKTYEIVDNVLVDQRP----R 160 (300)
T ss_pred EECCCCeEEeEe-----eCCCCcceEEECCCCCEEEEEecC----------CCeEEEEeCCCCeEEEEEEcCCCc----c
Confidence 999876432111 11111122333 345666665521 123555677655432211111111 1
Q ss_pred eeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcE
Q 009435 194 HTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW 229 (535)
Q Consensus 194 ~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W 229 (535)
+.....+++.+++++... +.+..||+++.+.
T Consensus 161 ~~~~s~dg~~l~~~~~~~-----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIG-----GTVSVIDVATRKV 191 (300)
T ss_pred EEEECCCCCEEEEEcCCC-----CEEEEEEcCccee
Confidence 222223455444444322 3488899987654
No 105
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.61 E-value=49 Score=33.57 Aligned_cols=228 Identities=14% Similarity=0.197 Sum_probs=95.9
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
.+...+.++-|++|-. ..++.=+---.+|..+......+....-.++...++..|++|-. .-++.-.
T Consensus 21 dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~ 87 (302)
T PF14870_consen 21 DVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTT 87 (302)
T ss_dssp EEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEES
T ss_pred EEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEec
Confidence 3344455678888753 22333222346899865322222122233444568889998742 1233333
Q ss_pred CCCCeEEeccccCCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCcee
Q 009435 117 TSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (535)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s 195 (535)
-.-.+|++++...++| -..+.... -++.++++|.. ..+|+-.-.-.+|+.+... .. .....
T Consensus 88 DgG~tW~~v~l~~~lp--gs~~~i~~l~~~~~~l~~~~------------G~iy~T~DgG~tW~~~~~~---~~-gs~~~ 149 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLP--GSPFGITALGDGSAELAGDR------------GAIYRTTDGGKTWQAVVSE---TS-GSIND 149 (302)
T ss_dssp STTSS-EE----TT-S--S-EEEEEEEETTEEEEEETT--------------EEEESSTTSSEEEEE-S--------EEE
T ss_pred CCCCCcEEeecCCCCC--CCeeEEEEcCCCcEEEEcCC------------CcEEEeCCCCCCeeEcccC---Cc-ceeEe
Confidence 3346899877433333 23333433 35677777652 3456655567799988632 11 11222
Q ss_pred EEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEE-EEECCEEEEEeccCCCCCccCcEEEE
Q 009435 196 CSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST-VAFGKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 196 ~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~-v~~~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
+... ++++++++-. +. -+...|+....|+.... +..|.--++ ..-++.++++. ... .+.+-
T Consensus 150 ~~r~~dG~~vavs~~-G~-----~~~s~~~G~~~w~~~~r----~~~~riq~~gf~~~~~lw~~~-~Gg------~~~~s 212 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSR-GN-----FYSSWDPGQTTWQPHNR----NSSRRIQSMGFSPDGNLWMLA-RGG------QIQFS 212 (302)
T ss_dssp EEE-TTS-EEEEETT-SS-----EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT------EEEEE
T ss_pred EEECCCCcEEEEECc-cc-----EEEEecCCCccceEEcc----CccceehhceecCCCCEEEEe-CCc------EEEEc
Confidence 2222 5566656532 22 13356788888999875 333444444 44456777764 111 13333
Q ss_pred e--cCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccC
Q 009435 274 D--VDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (535)
Q Consensus 274 d--~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (535)
+ -...+|.+... +.....+.+..... ...+.+++.||..
T Consensus 213 ~~~~~~~~w~~~~~--~~~~~~~~~ld~a~--~~~~~~wa~gg~G 253 (302)
T PF14870_consen 213 DDPDDGETWSEPII--PIKTNGYGILDLAY--RPPNEIWAVGGSG 253 (302)
T ss_dssp E-TTEEEEE---B---TTSS--S-EEEEEE--SSSS-EEEEESTT
T ss_pred cCCCCccccccccC--CcccCceeeEEEEe--cCCCCEEEEeCCc
Confidence 3 23456776322 11233333332222 3568888888764
No 106
>PRK13684 Ycf48-like protein; Provisional
Probab=83.28 E-value=58 Score=33.44 Aligned_cols=199 Identities=11% Similarity=0.102 Sum_probs=94.2
Q ss_pred CCCeEEEeeccCCCCCCCCceEEEEEC-CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCE
Q 009435 68 VNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKR 146 (535)
Q Consensus 68 ~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~ 146 (535)
.-.+|+++......| ........++ +.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+....+.
T Consensus 117 gG~tW~~~~~~~~~~--~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g 184 (334)
T PRK13684 117 GGKNWTRIPLSEKLP--GSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDG 184 (334)
T ss_pred CCCCCeEccCCcCCC--CCceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCC
Confidence 345899875211122 2223344443 446666532 345555555678987652 112233444444444
Q ss_pred EEEEcCCCCCCCCCCceeeeeEEEE-ECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEE--
Q 009435 147 LFIFGGCGKSSNTNDEVYYNDLYIL-NTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL-- 222 (535)
Q Consensus 147 lyv~GG~~~~~~~~~~~~~n~v~~y-d~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~y-- 222 (535)
.|+..|.. -.++.. |....+|+.+.. +..+.-++++.. ++.++++|... ..++
T Consensus 185 ~~v~~g~~-----------G~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s 241 (334)
T PRK13684 185 KYVAVSSR-----------GNFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG--------QIRFND 241 (334)
T ss_pred eEEEEeCC-----------ceEEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC--------EEEEcc
Confidence 44443310 122222 344467998852 333344444443 67788886531 2233
Q ss_pred ECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeee
Q 009435 223 DTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (535)
Q Consensus 223 d~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~ 301 (535)
+-.-..|+.+.... .......++++.. ++.+|++|... .++.-.....+|..+......|. .... ..+
T Consensus 242 ~d~G~sW~~~~~~~-~~~~~~l~~v~~~~~~~~~~~G~~G-------~v~~S~d~G~tW~~~~~~~~~~~--~~~~-~~~ 310 (334)
T PRK13684 242 PDDLESWSKPIIPE-ITNGYGYLDLAYRTPGEIWAGGGNG-------TLLVSKDGGKTWEKDPVGEEVPS--NFYK-IVF 310 (334)
T ss_pred CCCCCccccccCCc-cccccceeeEEEcCCCCEEEEcCCC-------eEEEeCCCCCCCeECCcCCCCCc--ceEE-EEE
Confidence 22345799764310 0011122333333 56788887642 14443334568998754222221 1111 122
Q ss_pred cccCCCEEEEEcc
Q 009435 302 DPLKGGVLVFIGG 314 (535)
Q Consensus 302 ~~~~~~~l~v~GG 314 (535)
..++.+++.|.
T Consensus 311 --~~~~~~~~~G~ 321 (334)
T PRK13684 311 --LDPEKGFVLGQ 321 (334)
T ss_pred --eCCCceEEECC
Confidence 24667777775
No 107
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=82.90 E-value=63 Score=33.55 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=51.5
Q ss_pred CCcccccceEEEEcCCCEEEEECCc---CCCCCCcceEEEEEcCCCeEEE-eeccCCCCCCCCc------eEEEEEC-CE
Q 009435 28 GPGKRWGHTCNAIKGGRFLYVFGGY---GKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPTPRDS------HSCTTVG-EN 96 (535)
Q Consensus 28 ~P~~R~gh~~~~v~~~~~Iyi~GG~---~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~~R~~------hs~~~~~-~~ 96 (535)
.|..+..|.. ..++++.||+.-.+ ...+...+.+.+||+.+.+-.. ++ .++.||.. ..+..-+ ..
T Consensus 43 i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~---~p~~p~~~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 43 TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE---LPEGPRFLVGTYPWMTSLTPDNKT 118 (352)
T ss_pred EEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc---cCCCchhhccCccceEEECCCCCE
Confidence 3444444443 66788899998774 1122245779999999987653 32 12333421 1122224 45
Q ss_pred EEEEcCCCCCCCCCcEEEEECCCCeEEe
Q 009435 97 LYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (535)
Q Consensus 97 Iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 124 (535)
+||.- ..+-+.+-+.|+.+++-..
T Consensus 119 l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 119 LLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EEEec----CCCCCEEEEEECCCCcEEE
Confidence 77762 2345678888888877543
No 108
>PRK02889 tolB translocation protein TolB; Provisional
Probab=82.30 E-value=73 Score=33.86 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=74.4
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p 188 (535)
..+|++|+.+.+=..+. ..+.. .......-++ +|++..... + ..++|.+|..+...+.+... .
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~------g---~~~Iy~~d~~~~~~~~lt~~---~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGS-NSAPAWSPDGRTLAVALSRD------G---NSQIYTVNADGSGLRRLTQS---S 283 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCC-ccceEECCCCCEEEEEEccC------C---CceEEEEECCCCCcEECCCC---C
Confidence 56999999887654443 11111 1112222344 454433311 1 36799999988777666421 1
Q ss_pred CCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccC
Q 009435 189 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (535)
Q Consensus 189 ~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~ 268 (535)
.........-+++.++|...... ..++|.+|..+...+.+...+. ........-+++.+++...... ..
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~~~g---~~ 352 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISRVGG---AF 352 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEccCC---cE
Confidence 11111122224443344322211 2468899988887777653221 1111122334443333332211 13
Q ss_pred cEEEEecCCCcEEEEee
Q 009435 269 DLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 269 dv~~yd~~~~~W~~l~~ 285 (535)
.++++|+.++....+..
T Consensus 353 ~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 353 KLYVQDLATGQVTALTD 369 (427)
T ss_pred EEEEEECCCCCeEEccC
Confidence 69999999888777643
No 109
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=81.96 E-value=65 Score=33.08 Aligned_cols=232 Identities=16% Similarity=0.146 Sum_probs=106.2
Q ss_pred EECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE---ECCEEEEEcCCCCCCCCCcEEEEEC--CCCeE
Q 009435 48 VFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT---VGENLYVFGGTDGMNPLRDLHILDT--SSHTW 122 (535)
Q Consensus 48 i~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~---~~~~Iyv~GG~~~~~~~~~~~~yd~--~t~~W 122 (535)
++|++.......=.++.||..+.++..+...... .+.+... -++.||+..... .....+..|++ .+.+.
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~----~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG----ENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES----SSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC----CCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCccee
Confidence 4577665322222345667789999876632111 1122222 256688886543 12334555554 44677
Q ss_pred EeccccCCCCCCCCCeEEEEE--C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCc-cEEEec------cCCCC---CC
Q 009435 123 ISPSVRGEGPEAREGHSAALV--G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRAT------TSGNP---PS 189 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~--~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~-~W~~~~------~~~~~---p~ 189 (535)
+.+... +..-...+.+.+ + ..||+.- +. ...+.+|++... .-.... ..++. ..
T Consensus 77 ~~~~~~---~~~g~~p~~i~~~~~g~~l~van-y~----------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 77 TLLNSV---PSGGSSPCHIAVDPDGRFLYVAN-YG----------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp EEEEEE---EESSSCEEEEEECTTSSEEEEEE-TT----------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred EEeeee---ccCCCCcEEEEEecCCCEEEEEE-cc----------CCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 665532 211122222333 3 4566642 11 134566666542 222221 01111 12
Q ss_pred CCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCC-ceeeEEEEE-CCEEEEEeccCCC
Q 009435 190 ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSP-RAGHSTVAF-GKNLFVFGGFTDS 263 (535)
Q Consensus 190 ~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~-R~~hs~v~~-~~~iyv~GG~~~~ 263 (535)
.-..|.+... ++.+|+..= -.+.|++|+..... ........ .|.. --.|.+..- +..+||+.-.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~--- 212 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNEL--- 212 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETT---
T ss_pred cccceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCC---
Confidence 2334555444 346776531 13568888876655 55533211 1221 112333322 3578898754
Q ss_pred CCccCcEEEEecC--CCcEEEEeeCCCCC---CCceeeeeeeecccCCCEEEEEc
Q 009435 264 QNLYDDLYMIDVD--SGLWTKVITTGEGP---SARFSVAGDCLDPLKGGVLVFIG 313 (535)
Q Consensus 264 ~~~~~dv~~yd~~--~~~W~~l~~~~~~p---~~r~~~~~~~~~~~~~~~l~v~G 313 (535)
.+.|.+|+.. +..++.+......| ......+...+ ...+..||+.-
T Consensus 213 ---s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsn 263 (345)
T PF10282_consen 213 ---SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSN 263 (345)
T ss_dssp ---TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEE
T ss_pred ---CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE-ecCCCEEEEEe
Confidence 3456666666 66777665433222 22212222223 34566777753
No 110
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.57 E-value=51 Score=33.39 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=71.1
Q ss_pred CcEEEEECCCC-----eEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc-EEEecc
Q 009435 110 RDLHILDTSSH-----TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATT 183 (535)
Q Consensus 110 ~~~~~yd~~t~-----~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~-W~~~~~ 183 (535)
..+++|+.... +++.+... +.+ -.-.+++.++++|.+.-| +.+++|++...+ +.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~--g~V~ai~~~~~~lv~~~g-------------~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVK--GPVTAICSFNGRLVVAVG-------------NKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EES--S-EEEEEEETTEEEEEET-------------TEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eec--CcceEhhhhCCEEEEeec-------------CEEEEEEccCcccchhhhe
Confidence 67899998885 45443311 122 224567777899777766 467788877777 877763
Q ss_pred CCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEec
Q 009435 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGG 259 (535)
Q Consensus 184 ~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG 259 (535)
. ..+-...++.+.++.|+ +|-.... -.++.|+.+..+-..+.. -..++...++..+ ++. .++++
T Consensus 126 ~---~~~~~i~sl~~~~~~I~-vgD~~~s----v~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 126 Y---DSPFYITSLSVFKNYIL-VGDAMKS----VSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp E----BSSSEEEEEEETTEEE-EEESSSS----EEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSS-EEEEE
T ss_pred e---cceEEEEEEeccccEEE-EEEcccC----EEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCc-EEEEE
Confidence 3 22235556666788555 4432111 125567887776777765 4556766666666 554 44444
No 111
>PLN00181 protein SPA1-RELATED; Provisional
Probab=81.10 E-value=1.1e+02 Score=35.31 Aligned_cols=139 Identities=11% Similarity=0.108 Sum_probs=67.6
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 95 ~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
+.+++.|+.+ ..+.+||..+++-...- . .....-.+++.. ++.+++.||.+ ..+.+||
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~~~~-~---~H~~~V~~l~~~p~~~~~L~Sgs~D-----------g~v~iWd 604 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLVTEM-K---EHEKRVWSIDYSSADPTLLASGSDD-----------GSVKLWS 604 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEEEEe-c---CCCCCEEEEEEcCCCCCEEEEEcCC-----------CEEEEEE
Confidence 4456666654 35788888776542211 0 111111223332 45677777732 3467778
Q ss_pred CCCccE-EEeccCCCCCCCCCceeEEee---CCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCCceeeE
Q 009435 173 TETFVW-KRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHS 246 (535)
Q Consensus 173 ~~t~~W-~~~~~~~~~p~~r~~~s~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~R~~hs 246 (535)
+.+..- ..+.. .....++.. ++.+++.|+.++ .+.+||+.+.. ...+.. ... .-..
T Consensus 605 ~~~~~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~~~~~~~~----h~~-~V~~ 666 (793)
T PLN00181 605 INQGVSIGTIKT-------KANICCVQFPSESGRSLAFGSADH------KVYYYDLRNPKLPLCTMIG----HSK-TVSY 666 (793)
T ss_pred CCCCcEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCccceEecC----CCC-CEEE
Confidence 765432 22211 011122222 467788887553 48889987543 222211 000 1112
Q ss_pred EEEECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 247 TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 247 ~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
+...++..++.|+.+. .+.+||+..
T Consensus 667 v~f~~~~~lvs~s~D~------~ikiWd~~~ 691 (793)
T PLN00181 667 VRFVDSSTLVSSSTDN------TLKLWDLSM 691 (793)
T ss_pred EEEeCCCEEEEEECCC------EEEEEeCCC
Confidence 2223556666776532 377888764
No 112
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=80.48 E-value=62 Score=31.86 Aligned_cols=187 Identities=18% Similarity=0.211 Sum_probs=101.7
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcC-----CCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEEC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTV-----NQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~-----t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~ 117 (535)
.++||++.|.... .++.|... .+...+.- .+|.+-.+.+.++.++.+|.--. ..+.+.+||+
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec-----CCceEEEEEC
Confidence 4578888886543 45665432 22222211 45677778888889998887643 3578999999
Q ss_pred CCCeEE---eccccCC---CCCCCCC---eEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc----cEEEeccC
Q 009435 118 SSHTWI---SPSVRGE---GPEAREG---HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF----VWKRATTS 184 (535)
Q Consensus 118 ~t~~W~---~~~~~g~---~p~~r~~---hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~----~W~~~~~~ 184 (535)
.++.-. .++-.+. .|-...+ .-.++.++-|+|+=..... .+. -.|-++|+.+- +|..-
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---~g~---ivvskld~~tL~v~~tw~T~--- 167 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---NGN---IVVSKLDPETLSVEQTWNTS--- 167 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---CCc---EEEEeeCcccCceEEEEEec---
Confidence 987644 3331111 1111111 2234445667777553211 111 23445566543 45431
Q ss_pred CCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE---CCEEEEEe
Q 009435 185 GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFG 258 (535)
Q Consensus 185 ~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~---~~~iyv~G 258 (535)
.+ .+....+.++-+.||++...+... ..-.+.||+.+++=..+.. ..+.+-..++++.. +.+||++-
T Consensus 168 --~~-k~~~~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 168 --YP-KRSAGNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred --cC-chhhcceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 22 233334555677888887665432 3346889999887665543 12222234555555 35687764
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=78.50 E-value=97 Score=32.96 Aligned_cols=191 Identities=14% Similarity=0.119 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (535)
..++++|..+++-+.+. ..+..-.......-+.+|++....++ ..++|++|..+.+.+++.. .... ....
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~---~~~~-~~~~ 292 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTD---GRSN-NTEP 292 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccC---CCCC-cCce
Confidence 46899998887766543 22211111111111345655433222 2469999999887766542 1111 1111
Q ss_pred EEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCce
Q 009435 140 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 219 (535)
Q Consensus 140 ~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i 219 (535)
...-+++.++|..- ... ...+|.+|+.+...+.+...+. ........-+++.+++.+.... ...+
T Consensus 293 ~wSPDG~~I~f~s~-----~~g---~~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~SpDG~~Ia~~~~~~g---~~~I 357 (429)
T PRK03629 293 TWFPDSQNLAYTSD-----QAG---RPQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVSSNGG---QQHI 357 (429)
T ss_pred EECCCCCEEEEEeC-----CCC---CceEEEEECCCCCeEEeecCCC----CccCEEECCCCCEEEEEEccCC---CceE
Confidence 22224443434331 001 2478899998887777653211 1111222234444444433222 2368
Q ss_pred EEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 220 HILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 220 ~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
+.+|+++..++.+.... ........-+++.+++.+.... ...+++.++....=..+
T Consensus 358 ~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 358 AKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM---GSVLNLVSTDGRFKARL 413 (429)
T ss_pred EEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC---ceEEEEEECCCCCeEEC
Confidence 99999999988776411 1111223345666666654322 23466777654443333
No 114
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.20 E-value=38 Score=35.90 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=75.1
Q ss_pred EEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE-EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeE
Q 009435 90 CTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW-ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDL 168 (535)
Q Consensus 90 ~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v 168 (535)
...-+++++..|+..+ .+-+||..+..- +.+. ....|-..--.+..++.+++.|+= . .-+
T Consensus 75 ~fR~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~---ah~apv~~~~f~~~d~t~l~s~sD------d-----~v~ 135 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESG-----HVKVFDMKSRVILRQLY---AHQAPVHVTKFSPQDNTMLVSGSD------D-----KVV 135 (487)
T ss_pred EeecCCeEEEccCCcC-----cEEEeccccHHHHHHHh---hccCceeEEEecccCCeEEEecCC------C-----ceE
Confidence 3344899999998644 578888544211 1111 111121122233457889999882 1 112
Q ss_pred EEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCC-cEEEeecCCCCCCCceeeEE
Q 009435 169 YILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHST 247 (535)
Q Consensus 169 ~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~v~~~g~~p~~R~~hs~ 247 (535)
-.+|..+.. ......+.-..-|+ ..+...++.|++.||+++. +-.||+.+. .|..--..|. |.. .+
T Consensus 136 k~~d~s~a~-v~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~elnhg~-pVe----~v 202 (487)
T KOG0310|consen 136 KYWDLSTAY-VQAELSGHTDYVRC-GDISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVELNHGC-PVE----SV 202 (487)
T ss_pred EEEEcCCcE-EEEEecCCcceeEe-eccccCCCeEEEecCCCce------EEEEEeccCCceeEEecCCC-cee----eE
Confidence 233444433 23222222222221 1223347889999998875 677888766 5555444332 211 12
Q ss_pred EEE--CCEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 248 VAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 248 v~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
+.+ +..|...||. .+-++|+.++
T Consensus 203 l~lpsgs~iasAgGn--------~vkVWDl~~G 227 (487)
T KOG0310|consen 203 LALPSGSLIASAGGN--------SVKVWDLTTG 227 (487)
T ss_pred EEcCCCCEEEEcCCC--------eEEEEEecCC
Confidence 222 2345555553 3677777644
No 115
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.12 E-value=1.5e+02 Score=34.32 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=23.4
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEec
Q 009435 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISP 125 (535)
Q Consensus 88 hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~ 125 (535)
.+-+.++++||+... .+.++.+|..|.+ |+.-
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEc
Confidence 445567999999864 3578999988754 8753
No 116
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.96 E-value=94 Score=31.02 Aligned_cols=186 Identities=11% Similarity=0.046 Sum_probs=98.4
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEE
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~ 140 (535)
.+-++|+++.+-++.++...++..-....+.--.++++..|-..-.. ++|+.++.-+..+ .|..-.-..+
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG------rLdPa~~~i~vfp----aPqG~gpyGi 194 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG------RLDPARNVISVFP----APQGGGPYGI 194 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce------ecCcccCceeeec----cCCCCCCcce
Confidence 67889998887777665444433333322222245677665321111 5666665443222 1222122233
Q ss_pred E-EECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCcee--E-EeeCCEEEEEecCCCCCccc
Q 009435 141 A-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT--C-SSWKNKIIVIGGEDGHDYYL 216 (535)
Q Consensus 141 ~-~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s--~-~~~~~~lyv~GG~~~~~~~~ 216 (535)
| .-++.+|+..= .-|-+-+.|+.+..=+.+. .|.+....+ + +--.+++++. ..-.
T Consensus 195 ~atpdGsvwyasl-----------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit------twg~ 253 (353)
T COG4257 195 CATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT------TWGT 253 (353)
T ss_pred EECCCCcEEEEec-----------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe------ccCC
Confidence 3 34677777521 1245667788777555554 222211111 1 1114566665 1123
Q ss_pred CceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 217 ~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
..+++||+.+..|.+..-.+.. +|-...-+--.+++++--= -.+.|.+||+++.+.+.+..
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea------~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEA------DAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeecc------ccCceeecCcccceEEEecC
Confidence 5699999999999998753322 3333333333455665211 13568999999999887743
No 117
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=74.34 E-value=1.2e+02 Score=31.86 Aligned_cols=245 Identities=16% Similarity=0.100 Sum_probs=109.0
Q ss_pred EEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCC-CCCceEEEEE-CCEEE-EEcCCCCCCCCCcEEEE
Q 009435 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPT-PRDSHSCTTV-GENLY-VFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 39 ~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~-~~~Iy-v~GG~~~~~~~~~~~~y 115 (535)
-..+++++ ||+|... -...+|..|..+.+-.+|. ..+. ...+ +++.- +..+| +-.+ ..++..
T Consensus 43 ft~dG~kl-lF~s~~d---g~~nly~lDL~t~~i~QLT---dg~g~~~~g-~~~s~~~~~~~Yv~~~-------~~l~~v 107 (386)
T PF14583_consen 43 FTDDGRKL-LFASDFD---GNRNLYLLDLATGEITQLT---DGPGDNTFG-GFLSPDDRALYYVKNG-------RSLRRV 107 (386)
T ss_dssp B-TTS-EE-EEEE-TT---SS-EEEEEETTT-EEEE------SS-B-TTT--EE-TTSSEEEEEETT-------TEEEEE
T ss_pred cCCCCCEE-EEEeccC---CCcceEEEEcccCEEEECc---cCCCCCccc-eEEecCCCeEEEEECC-------CeEEEE
Confidence 34556555 5554322 2256899999999999986 2221 2222 23333 44554 4443 478999
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEEC-CEEEEEcCCCCCCC---CC---------CceeeeeEEEEECCCccEEEec
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSN---TN---------DEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~~-~~lyv~GG~~~~~~---~~---------~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
|+.|.+=+.+- ..|..-.+....+++ +.-.++|=...... .. .....+.+...|+.+++.+.+-
T Consensus 108 dL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~ 184 (386)
T PF14583_consen 108 DLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF 184 (386)
T ss_dssp ETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred ECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence 99887644433 234333333333332 22222221100000 00 1233567888999999888775
Q ss_pred cCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccC
Q 009435 183 TSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 261 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~ 261 (535)
.. ..-.+|-...- +..+++|.=...-..+-..||..|........+... .+....+|-.-..++..+.+-++.
T Consensus 185 ~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 185 ED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp EE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred ec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC--CCCcccccccccCCCCEEEEEeec
Confidence 22 11123433322 556777743322222223699999988777777542 345566777777776544443333
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
..+ .---|..||+.+..=+.+..+ +.+.|-.. ..++.+++-=|++.
T Consensus 259 ~~~-~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~s----s~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 259 PGG-QDFWIAGYDPDTGERRRLMEM-----PWCSHFMS----SPDGKLFVGDGGDA 304 (386)
T ss_dssp TTT---EEEEEE-TTT--EEEEEEE------SEEEEEE-----TTSSEEEEEE---
T ss_pred CCC-CceEEEeeCCCCCCceEEEeC-----CceeeeEE----cCCCCEEEecCCCC
Confidence 221 122378899988754445443 34555433 45788888766653
No 118
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=73.83 E-value=1.1e+02 Score=31.13 Aligned_cols=214 Identities=14% Similarity=0.190 Sum_probs=93.3
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (535)
++..||+|-. .-++.-.-.-.+|.++++....| -..+....+ ++.++++|.. ..+|+-.-.-.+
T Consensus 71 ~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~lp--gs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~t 135 (302)
T PF14870_consen 71 GNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKLP--GSPFGITALGDGSAELAGDR------GAIYRTTDGGKT 135 (302)
T ss_dssp TTEEEEEEET-------TEEEEESSTTSS-EE----TT-S--S-EEEEEEEETTEEEEEETT--------EEEESSTTSS
T ss_pred CCceEEEcCC-------ceEEEecCCCCCcEEeecCCCCC--CCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCC
Confidence 3457776531 12333334457999976433333 333444444 5677777642 345555545578
Q ss_pred EEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe-e
Q 009435 122 WISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-W 199 (535)
Q Consensus 122 W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~-~ 199 (535)
|+.+... .. -.-..+... ++++++++..+ +-+...|+-...|+.... +..|.--++.. -
T Consensus 136 W~~~~~~---~~-gs~~~~~r~~dG~~vavs~~G-----------~~~~s~~~G~~~w~~~~r----~~~~riq~~gf~~ 196 (302)
T PF14870_consen 136 WQAVVSE---TS-GSINDITRSSDGRYVAVSSRG-----------NFYSSWDPGQTTWQPHNR----NSSRRIQSMGFSP 196 (302)
T ss_dssp EEEEE-S--------EEEEEE-TTS-EEEEETTS-----------SEEEEE-TT-SS-EEEE------SSS-EEEEEE-T
T ss_pred eeEcccC---Cc-ceeEeEEECCCCcEEEEECcc-----------cEEEEecCCCccceEEcc----CccceehhceecC
Confidence 9876531 11 111122222 45666565532 112345777778998863 33333344433 3
Q ss_pred CCEEEEEecCCCCCcccCceEEEE--CCCCcEEEeecCCCCCCCceee--E-EEEE-CCEEEEEeccCCCCCccCcEEEE
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILD--TDTLTWKELNTSGMVLSPRAGH--S-TVAF-GKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd--~~t~~W~~v~~~g~~p~~R~~h--s-~v~~-~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
++.|++.. . +. .+..-+ -....|.+... |....++ - ++.. ++.+++.||.. .+++=
T Consensus 197 ~~~lw~~~-~-Gg-----~~~~s~~~~~~~~w~~~~~----~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~l~~S 258 (302)
T PF14870_consen 197 DGNLWMLA-R-GG-----QIQFSDDPDDGETWSEPII----PIKTNGYGILDLAYRPPNEIWAVGGSG-------TLLVS 258 (302)
T ss_dssp TS-EEEEE-T-TT-----EEEEEE-TTEEEEE---B-----TTSS--S-EEEEEESSSS-EEEEESTT--------EEEE
T ss_pred CCCEEEEe-C-Cc-----EEEEccCCCCccccccccC----CcccCceeeEEEEecCCCCEEEEeCCc-------cEEEe
Confidence 66777764 2 21 133333 24456777432 3322222 2 2333 47899999863 25555
Q ss_pred ecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEc
Q 009435 274 DVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (535)
Q Consensus 274 d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (535)
.-.-++|++.......|..-+... + ...++-+++|
T Consensus 259 ~DgGktW~~~~~~~~~~~n~~~i~--f---~~~~~gf~lG 293 (302)
T PF14870_consen 259 TDGGKTWQKDRVGENVPSNLYRIV--F---VNPDKGFVLG 293 (302)
T ss_dssp SSTTSS-EE-GGGTTSSS---EEE--E---EETTEEEEE-
T ss_pred CCCCccceECccccCCCCceEEEE--E---cCCCceEEEC
Confidence 556778999876554454443332 2 2356777877
No 119
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=72.61 E-value=33 Score=37.33 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=46.0
Q ss_pred CCCCCCCeEEEEEC--CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEec
Q 009435 131 GPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (535)
Q Consensus 131 ~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG 208 (535)
+-.|+++.-++... -.||+.|- -.+||++|++.+.|-..-.. ..+-..+.-..--+.|+.+||
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------------g~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------------GSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------------CcceEEEEcccccccccccc---ccccceeeeecCccceEEecc
Confidence 34567777777654 24666654 37899999999998654211 111111111112356888988
Q ss_pred CCCCCcccCceEEEECCCCc
Q 009435 209 EDGHDYYLSDVHILDTDTLT 228 (535)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~ 228 (535)
.++. +..+|+.+..
T Consensus 195 ~~g~------VEfwDpR~ks 208 (703)
T KOG2321|consen 195 EDGV------VEFWDPRDKS 208 (703)
T ss_pred cCce------EEEecchhhh
Confidence 6543 7788886543
No 120
>PRK02889 tolB translocation protein TolB; Provisional
Probab=72.02 E-value=1.4e+02 Score=31.68 Aligned_cols=183 Identities=12% Similarity=0.061 Sum_probs=89.0
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEEC-CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCe
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (535)
..+|++|..+++=..+. ..+.. .......-+ .+|++....++ ..++|.+|..+...+++.. .. .....
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~-~~~~~ 288 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGS-NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQ---SS-GIDTE 288 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCC-ccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCC---CC-CCCcC
Confidence 46999999887655543 11211 111111113 45554433322 3689999988777655431 11 11111
Q ss_pred EEEEECCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccC
Q 009435 139 SAALVGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLS 217 (535)
Q Consensus 139 s~~~~~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~ 217 (535)
....-+++ |++.... .+ ...+|.++..+...+.+...+. ........-+++.+++....+.. .
T Consensus 289 ~~wSpDG~~l~f~s~~------~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~~~g~---~ 352 (427)
T PRK02889 289 PFFSPDGRSIYFTSDR------GG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISRVGGA---F 352 (427)
T ss_pred eEEcCCCCEEEEEecC------CC---CcEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEccCCc---E
Confidence 22233444 4443221 01 2468888988888777753221 11111222244444343322221 3
Q ss_pred ceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 218 ~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
.++++|+.+...+.+..... .......-+++.+++...... ...+++++...
T Consensus 353 ~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~g---~~~l~~~~~~g 404 (427)
T PRK02889 353 KLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQGG---RSVLAAVSSDG 404 (427)
T ss_pred EEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecCC---CEEEEEEECCC
Confidence 69999999888777643211 111223335555555554322 23477777743
No 121
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.96 E-value=2e+02 Score=33.34 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=31.7
Q ss_pred cccCceEEEECCCCc--EEEeecCCC-----CCCCceeeEEEEECCE---EEEEeccCCCCCccCcEEEEecCCCc
Q 009435 214 YYLSDVHILDTDTLT--WKELNTSGM-----VLSPRAGHSTVAFGKN---LFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 214 ~~~~~i~~yd~~t~~--W~~v~~~g~-----~p~~R~~hs~v~~~~~---iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
.+.+.+..+|++|.+ |..-....+ .+..-....+...+++ +++.+..+ ..+|++|.++++
T Consensus 411 ~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~------G~~~vlDr~tG~ 480 (764)
T TIGR03074 411 KYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQ------GQIYVLDRRTGE 480 (764)
T ss_pred cccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCC------CEEEEEECCCCC
Confidence 467789999998874 766432111 1111111111111442 55555543 248999988774
No 122
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=70.50 E-value=2.5e+02 Score=33.91 Aligned_cols=158 Identities=15% Similarity=0.056 Sum_probs=82.3
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccC-------CCCC---CCCCeEEEEE--CCEEEEEcCCCCCCCCCC
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRG-------EGPE---AREGHSAALV--GKRLFIFGGCGKSSNTND 161 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g-------~~p~---~r~~hs~~~~--~~~lyv~GG~~~~~~~~~ 161 (535)
++.|||.... .+.+++||..++........| ..+. ...-..++.. ++.|||....
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------- 760 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--------
Confidence 5678887532 356899998877654322111 0000 0111223333 2458887552
Q ss_pred ceeeeeEEEEECCCccEEEeccCCC---------------CCCCCC--ceeEEe-eCCEEEEEecCCCCCcccCceEEEE
Q 009435 162 EVYYNDLYILNTETFVWKRATTSGN---------------PPSARD--SHTCSS-WKNKIIVIGGEDGHDYYLSDVHILD 223 (535)
Q Consensus 162 ~~~~n~v~~yd~~t~~W~~~~~~~~---------------~p~~r~--~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd 223 (535)
.+.|.+||+.+.....+..... ...... -.++++ -++.+||.... .+.|.+||
T Consensus 761 ---n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD 831 (1057)
T PLN02919 761 ---SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLD 831 (1057)
T ss_pred ---CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEE
Confidence 3678899988765432211000 000000 112222 25678887543 34599999
Q ss_pred CCCCcEEEeecCCCCC-------CCce--eeEEE-EECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 224 TDTLTWKELNTSGMVL-------SPRA--GHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 224 ~~t~~W~~v~~~g~~p-------~~R~--~hs~v-~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
+.+.....+...|..- .... -+.++ .-++++||.-..+ +.|.++|+.+..
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------n~Irvid~~~~~ 891 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------SLIRYLDLNKGE 891 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------CEEEEEECCCCc
Confidence 9998887766543210 0111 11222 2356788875532 458899988765
No 123
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=70.38 E-value=1.4e+02 Score=31.10 Aligned_cols=261 Identities=16% Similarity=0.141 Sum_probs=114.9
Q ss_pred cceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEE-EeeccCC---CCCCCCceEEEEECCEEEEEcCCCCCCCC
Q 009435 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWS-QPVIKGS---PPTPRDSHSCTTVGENLYVFGGTDGMNPL 109 (535)
Q Consensus 34 gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~-~l~~~g~---~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~ 109 (535)
.+..+...+++++|+. .+ ..+.+.++|..+.+=. .++..+. .+.+|...-.+......||+--. ..
T Consensus 80 ~~~i~~s~DG~~~~v~-n~-----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----d~ 149 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVA-NY-----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----DT 149 (369)
T ss_dssp EEEEEE--TTTEEEEE-EE-----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----TT
T ss_pred cceEEEcCCCCEEEEE-ec-----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----cC
Confidence 3444455566655443 22 2257889998876533 3332111 13334433333335556666433 24
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p 188 (535)
..+|..|.....=.... .....++-|-.....+ +.|+.+-. -.+.+-+.|.++.+-...-..+..|
T Consensus 150 ~~I~vVdy~d~~~~~~~---~i~~g~~~~D~~~dpdgry~~va~~----------~sn~i~viD~~~~k~v~~i~~g~~p 216 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVT---TIKVGRFPHDGGFDPDGRYFLVAAN----------GSNKIAVIDTKTGKLVALIDTGKKP 216 (369)
T ss_dssp TEEEEEETTTSSCEEEE---EEE--TTEEEEEE-TTSSEEEEEEG----------GGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred CeEEEEEecccccccee---eecccccccccccCcccceeeeccc----------ccceeEEEeeccceEEEEeeccccc
Confidence 57888887654211111 2334566666665554 33333321 1457888998887665543333333
Q ss_pred CCCCceeEEee-CCEEEEEecCCCCCcccCceEEEEC----CCCcEEEeecCCCCCCCceeeEEEEECC--EEEEEeccC
Q 009435 189 SARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDT----DTLTWKELNTSGMVLSPRAGHSTVAFGK--NLFVFGGFT 261 (535)
Q Consensus 189 ~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~----~t~~W~~v~~~g~~p~~R~~hs~v~~~~--~iyv~GG~~ 261 (535)
.+.....+.-. .+.++..+|.... .-.+.--|+ ....|+.+.. .+..-.++-+..+.+ .+|+- ..
T Consensus 217 ~~~~~~~~php~~g~vw~~~~~~~~---~~~~ig~~~v~v~d~~~wkvv~~---I~~~G~glFi~thP~s~~vwvd--~~ 288 (369)
T PF02239_consen 217 HPGPGANFPHPGFGPVWATSGLGYF---AIPLIGTDPVSVHDDYAWKVVKT---IPTQGGGLFIKTHPDSRYVWVD--TF 288 (369)
T ss_dssp EETTEEEEEETTTEEEEEEEBSSSS---EEEEEE--TTT-STTTBTSEEEE---EE-SSSS--EE--TT-SEEEEE---T
T ss_pred cccccccccCCCcceEEeeccccce---ecccccCCccccchhhcCeEEEE---EECCCCcceeecCCCCccEEee--cc
Confidence 33222222222 2345555554321 101222233 3356877775 333333334444544 35543 11
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccccc
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNER 336 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~ 336 (535)
.+.. .+.+.++|.++. +.+......+..+..|... ...+..+||.-..... .+..+|..++++.
T Consensus 289 ~~~~-~~~v~viD~~tl--~~~~~i~~~~~~~~~h~ef---~~dG~~v~vS~~~~~~-----~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 289 LNPD-ADTVQVIDKKTL--KVVKTITPGPGKRVVHMEF---NPDGKEVWVSVWDGNG-----AIVVYDAKTLKEK 352 (369)
T ss_dssp T-SS-HT-EEEEECCGT--EEEE-HHHHHT--EEEEEE----TTSSEEEEEEE--TT-----EEEEEETTTTEEE
T ss_pred CCCC-CceEEEEECcCc--ceeEEEeccCCCcEeccEE---CCCCCEEEEEEecCCC-----EEEEEECCCcEEE
Confidence 1111 577999998887 3333322222233333322 2456777776433321 5778887776643
No 124
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.21 E-value=1.5e+02 Score=31.33 Aligned_cols=216 Identities=12% Similarity=0.139 Sum_probs=103.4
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEEC-CEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
+..|++|-. ..++.=+-.-.+|+.+.....+|.. .+....++ +.++++|.. ..+++-+-.-.+|
T Consensus 147 ~~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW 211 (398)
T PLN00033 147 KEGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------GAIYVTSNAGRNW 211 (398)
T ss_pred CEEEEEcCc-------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc------ceEEEECCCCCCc
Confidence 457776532 1233333445799987643333333 23334443 557788742 2355555555789
Q ss_pred EeccccC-CCCCCC--------------CCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc-cEEEeccCC
Q 009435 123 ISPSVRG-EGPEAR--------------EGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSG 185 (535)
Q Consensus 123 ~~~~~~g-~~p~~r--------------~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~-~W~~~~~~~ 185 (535)
+...... +.+..+ ..+++.. .++.++++|-.+ .+++-...-. .|+.+..
T Consensus 212 ~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------------~~~~s~d~G~~~W~~~~~-- 277 (398)
T PLN00033 212 KAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------------NFYLTWEPGQPYWQPHNR-- 277 (398)
T ss_pred eEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------------cEEEecCCCCcceEEecC--
Confidence 8752110 001100 0111122 234566665421 2333333333 4898862
Q ss_pred CCCCCCCceeEE-eeCCEEEEEecCCCCCcccCceEEEECCCCc-----EEEeecCCCCCCCcee-eEEEEE-CCEEEEE
Q 009435 186 NPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTLT-----WKELNTSGMVLSPRAG-HSTVAF-GKNLFVF 257 (535)
Q Consensus 186 ~~p~~r~~~s~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~-----W~~v~~~g~~p~~R~~-hs~v~~-~~~iyv~ 257 (535)
+.++...++. ..++.+++.|... .++.-+..... |..+.. +..+.. ..+... ++.++++
T Consensus 278 --~~~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~ 344 (398)
T PLN00033 278 --ASARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGYRSKKEAWAA 344 (398)
T ss_pred --CCccceeeeeEcCCCCEEEEeCCc-------eEEEecCCCCcccccceeeccc----CCCCcceEEEEEcCCCcEEEE
Confidence 2333333332 3467888876432 23333333333 444432 222332 233333 5678888
Q ss_pred eccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEc
Q 009435 258 GGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (535)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (535)
|.... +++-...-.+|+........+.+-+.. .+ ..+++.|+.|
T Consensus 345 G~~G~-------v~~s~D~G~tW~~~~~~~~~~~~ly~v---~f--~~~~~g~~~G 388 (398)
T PLN00033 345 GGSGI-------LLRSTDGGKSWKRDKGADNIAANLYSV---KF--FDDKKGFVLG 388 (398)
T ss_pred ECCCc-------EEEeCCCCcceeEccccCCCCcceeEE---EE--cCCCceEEEe
Confidence 87532 555555677999986433333333322 22 2356777776
No 125
>PRK01742 tolB translocation protein TolB; Provisional
Probab=66.29 E-value=1.8e+02 Score=30.79 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCE-EEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCe
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGEN-LYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (535)
..++++|..+++-..+. ..+.. ....+..-+++ |++....++. -++|.+|+.+...+++.. .... ...
T Consensus 228 ~~i~i~dl~tg~~~~l~---~~~g~-~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~---~~~~-~~~ 296 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA---SFRGH-NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTS---GAGN-NTE 296 (429)
T ss_pred cEEEEEeCCCCceEEEe---cCCCc-cCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeecc---CCCC-cCC
Confidence 46899998887655543 11111 11111122444 4443322222 368999998877665542 1111 111
Q ss_pred EEEEECCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccC
Q 009435 139 SAALVGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLS 217 (535)
Q Consensus 139 s~~~~~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~ 217 (535)
.....+++ |++..... + ...+|.+|.....-+.+... . .. ....-+++.+++.+. +
T Consensus 297 ~~wSpDG~~i~f~s~~~------g---~~~I~~~~~~~~~~~~l~~~-----~-~~-~~~SpDG~~ia~~~~-------~ 353 (429)
T PRK01742 297 PSWSPDGQSILFTSDRS------G---SPQVYRMSASGGGASLVGGR-----G-YS-AQISADGKTLVMING-------D 353 (429)
T ss_pred EEECCCCCEEEEEECCC------C---CceEEEEECCCCCeEEecCC-----C-CC-ccCCCCCCEEEEEcC-------C
Confidence 22223444 44433211 1 23677777765543333211 1 11 111224443434332 3
Q ss_pred ceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEecc
Q 009435 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF 260 (535)
Q Consensus 218 ~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~ 260 (535)
.++.+|+.+..++.+... . ........-++++++++..
T Consensus 354 ~i~~~Dl~~g~~~~lt~~---~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 354 NVVKQDLTSGSTEVLSST---F--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CEEEEECCCCCeEEecCC---C--CCCCceECCCCCEEEEEEc
Confidence 578899999988876431 1 1111223335666676654
No 126
>smart00284 OLF Olfactomedin-like domains.
Probab=65.98 E-value=1.4e+02 Score=29.43 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=97.2
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECC----CCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTS----SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~----t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
++++|++.+.. ...+.++.|... ...+.+.- .+|.+-.|.+.+++++.+|.--. ..+.|.
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~-----------~s~~ii 97 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF-----------NSHDIC 97 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec-----------CCccEE
Confidence 57888886653 123445566432 22222111 36777788889999999998544 146799
Q ss_pred EEECCCccEEEeccC------CCCCCCCCcee---EEeeCCEEEEE-ecCCCCCcccCceEEEECCCCcEEEeecCCCCC
Q 009435 170 ILNTETFVWKRATTS------GNPPSARDSHT---CSSWKNKIIVI-GGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 239 (535)
Q Consensus 170 ~yd~~t~~W~~~~~~------~~~p~~r~~~s---~~~~~~~lyv~-GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p 239 (535)
+||+.+.+-...... ...+-...+++ .++.++-|+|+ ......+. =-|-.+|+.+..-...=.++ .+
T Consensus 98 KydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~--ivvSkLnp~tL~ve~tW~T~-~~ 174 (255)
T smart00284 98 RFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK--IVISKLNPATLTIENTWITT-YN 174 (255)
T ss_pred EEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC--EEEEeeCcccceEEEEEEcC-CC
Confidence 999998876433211 01111111122 23334555554 22222110 11346677665432221111 22
Q ss_pred CCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEE
Q 009435 240 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 312 (535)
Q Consensus 240 ~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~ 312 (535)
.+...-+.++-+.||++-...... ..=.+.||..+++=..+... .+ .++.+...+-..+.+.+||+.
T Consensus 175 -k~sa~naFmvCGvLY~~~s~~~~~--~~I~yayDt~t~~~~~~~i~--f~-n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 175 -KRSASNAFMICGILYVTRSLGSKG--EKVFYAYDTNTGKEGHLDIP--FE-NMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred -cccccccEEEeeEEEEEccCCCCC--cEEEEEEECCCCccceeeee--ec-cccccceeceeCCCCCeEEEE
Confidence 223334566678888885322111 12268999988763333221 12 234433333334556777764
No 127
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=65.68 E-value=1.6e+02 Score=29.79 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=70.4
Q ss_pred ceEEEEEcCCC-----eEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe-EEeccccCCCCC
Q 009435 60 NQVHVFDTVNQ-----TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT-WISPSVRGEGPE 133 (535)
Q Consensus 60 ~~~~~yd~~t~-----~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~ 133 (535)
..++.|+..+. +++.+. ..+.+-.-++.+.++++|.+.-| +.+++|+....+ +.... ....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~---~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKA---FYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEE---EE-B
T ss_pred cEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhh---eecc
Confidence 67999998885 555443 22333445677778999777666 578888888877 76655 2333
Q ss_pred CCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEE
Q 009435 134 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVI 206 (535)
Q Consensus 134 ~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~ 206 (535)
+-.-.++...++.|++ |-..+ .-.++.|+....+-..+.. ...++...++..+ ++..++.
T Consensus 129 ~~~i~sl~~~~~~I~v-gD~~~---------sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 129 PFYITSLSVFKNYILV-GDAMK---------SVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp SSSEEEEEEETTEEEE-EESSS---------SEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEE
T ss_pred eEEEEEEeccccEEEE-EEccc---------CEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEE
Confidence 3355566667776654 43211 1234566776666666652 2345555566555 5443433
No 128
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=65.40 E-value=1.8e+02 Score=30.37 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCeE-EEeeccCCCCCCCCceEEEEE---CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCC
Q 009435 60 NQVHVFDTVNQTW-SQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAR 135 (535)
Q Consensus 60 ~~~~~yd~~t~~W-~~l~~~g~~P~~R~~hs~~~~---~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 135 (535)
+.+.+.|..+.+= .+++ ....-|..... +..+|+.+. + ..+-++|+.+.+-...- +...
T Consensus 16 ~~v~viD~~t~~~~~~i~------~~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~v~~i-----~~G~ 78 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIP------TGGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKVVATI-----KVGG 78 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-------STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSEEEEE-----E-SS
T ss_pred CEEEEEECCCCeEEEEEc------CCCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccEEEEE-----ecCC
Confidence 6789999888653 3433 22223554443 356888853 2 36999999988743211 1222
Q ss_pred CCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE-eccCC---CCCCCCCceeEEeeCCEEEEEecCC
Q 009435 136 EGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSG---NPPSARDSHTCSSWKNKIIVIGGED 210 (535)
Q Consensus 136 ~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~-~~~~~---~~p~~r~~~s~~~~~~~lyv~GG~~ 210 (535)
...+++. .+++..+.+.+ ..+.+.++|.++.+-.+ ++..+ ..+.+|...-.....+..||+--.+
T Consensus 79 ~~~~i~~s~DG~~~~v~n~----------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANY----------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEEE--TTTEEEEEEE----------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred CcceEEEcCCCCEEEEEec----------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 2233333 34444444332 24678889987754333 33211 1133343333333345555553322
Q ss_pred CCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECC-EEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCC
Q 009435 211 GHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG 289 (535)
Q Consensus 211 ~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~-~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~ 289 (535)
..+++..|.....=..+.. ....+..|-.....+ +.|+.+-.. .+.+-++|.++++-..+...+..
T Consensus 149 -----~~~I~vVdy~d~~~~~~~~---i~~g~~~~D~~~dpdgry~~va~~~-----sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 149 -----TGEIWVVDYSDPKNLKVTT---IKVGRFPHDGGFDPDGRYFLVAANG-----SNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp -----TTEEEEEETTTSSCEEEEE---EE--TTEEEEEE-TTSSEEEEEEGG-----GTEEEEEETTTTEEEEEEE-SSS
T ss_pred -----CCeEEEEEeccccccceee---ecccccccccccCcccceeeecccc-----cceeEEEeeccceEEEEeecccc
Confidence 3468888865432111111 234555565554443 444443222 45789999988876555444433
Q ss_pred C
Q 009435 290 P 290 (535)
Q Consensus 290 p 290 (535)
|
T Consensus 216 p 216 (369)
T PF02239_consen 216 P 216 (369)
T ss_dssp B
T ss_pred c
Confidence 3
No 129
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=65.18 E-value=1.6e+02 Score=29.69 Aligned_cols=211 Identities=13% Similarity=0.055 Sum_probs=91.1
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCe--EEEeeccCCCCCCCCceEEEEE-C-CEEEEEcCCCCCCCCCcE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT--WSQPVIKGSPPTPRDSHSCTTV-G-ENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~~-~-~~Iyv~GG~~~~~~~~~~ 112 (535)
.+..++++.||+..- . .+.+.+|+..++. ...+. ..+....-|.++.. + ..+|+..- ..+.+
T Consensus 85 i~~~~~g~~l~v~~~-~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v 150 (330)
T PRK11028 85 ISTDHQGRFLFSASY-N-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPCL-----KEDRI 150 (330)
T ss_pred EEECCCCCEEEEEEc-C-----CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEEeeC-----CCCEE
Confidence 344456666666532 1 2457777775431 11111 11222233554444 3 35666542 23578
Q ss_pred EEEECCCCe-EEec-cccCCCCCCCCCeEEEEEC--CEEEEEcCCCCCCCCCCceeeeeEEEEECC--CccEEEeccCCC
Q 009435 113 HILDTSSHT-WISP-SVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTE--TFVWKRATTSGN 186 (535)
Q Consensus 113 ~~yd~~t~~-W~~~-~~~g~~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~--t~~W~~~~~~~~ 186 (535)
.+||+.+.. .... ...-..+....-+.++... ..+|+.-.. .+.+.+||++ +.+++.+.....
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------~~~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------NSSVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred EEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------CCEEEEEEEeCCCCCEEEEEEEec
Confidence 999987632 2110 0000011111111233332 467786431 3566666665 445544432212
Q ss_pred CC----CCCCceeEEee--CCEEEEEecCCCCCcccCceEEEEC--CCCcEEEeecCCCCCCCceeeEEEEECCEEEEEe
Q 009435 187 PP----SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDT--DTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFG 258 (535)
Q Consensus 187 ~p----~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~--~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~G 258 (535)
.| .++....+... +..+|+... ..+.+.+|+. .+..++.+........||. .....-+..||+..
T Consensus 220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~------~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~-~~~~~dg~~l~va~ 292 (330)
T PRK11028 220 MPADFSDTRWAADIHITPDGRHLYACDR------TASLISVFSVSEDGSVLSFEGHQPTETQPRG-FNIDHSGKYLIAAG 292 (330)
T ss_pred CCCcCCCCccceeEEECCCCCEEEEecC------CCCeEEEEEEeCCCCeEEEeEEEeccccCCc-eEECCCCCEEEEEE
Confidence 22 23332223322 345676521 1245666665 4445554443111123332 11112244566654
Q ss_pred ccCCCCCccCcEEEEe--cCCCcEEEEee
Q 009435 259 GFTDSQNLYDDLYMID--VDSGLWTKVIT 285 (535)
Q Consensus 259 G~~~~~~~~~dv~~yd--~~~~~W~~l~~ 285 (535)
.. .+.+.+|+ ..++.+..+..
T Consensus 293 ~~------~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 293 QK------SHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred cc------CCcEEEEEEcCCCCcEEEccc
Confidence 32 23455554 45667766654
No 130
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=64.89 E-value=1.7e+02 Score=30.01 Aligned_cols=185 Identities=15% Similarity=0.164 Sum_probs=96.8
Q ss_pred cCCCCccc----ccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECC-EEEE
Q 009435 25 SSSGPGKR----WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYV 99 (535)
Q Consensus 25 ~g~~P~~R----~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~Iyv 99 (535)
.+..|.+| +.|.+...+++++|++. + - -.+.++.|+...+.-......--.|..-..|-+.--++ .+|+
T Consensus 134 ~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~---D-L--G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~ 207 (346)
T COG2706 134 TGSGPHERQESPHVHSANFTPDGRYLVVP---D-L--GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYL 207 (346)
T ss_pred CCCCCCccccCCccceeeeCCCCCEEEEe---e-c--CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEE
Confidence 44445566 46777777888755553 1 1 13678899988766554331111222222343333344 4788
Q ss_pred EcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCC---eEEEEE--C-CEEEEEcCCCCCCCCCCceeeeeEEE--E
Q 009435 100 FGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG---HSAALV--G-KRLFIFGGCGKSSNTNDEVYYNDLYI--L 171 (535)
Q Consensus 100 ~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~---hs~~~~--~-~~lyv~GG~~~~~~~~~~~~~n~v~~--y 171 (535)
+.=.+ ..-++|.||....+.+.+++...+|..-.+ .++..+ + ..||+.-- ..+.+.+ .
T Consensus 208 v~EL~---stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-----------g~dsI~~f~V 273 (346)
T COG2706 208 VNELN---STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-----------GHDSIAVFSV 273 (346)
T ss_pred EeccC---CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-----------CCCeEEEEEE
Confidence 86432 234678888888888888765555544322 222222 3 45666422 1234444 4
Q ss_pred ECCCccEEEeccCC-CCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeec
Q 009435 172 NTETFVWKRATTSG-NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 172 d~~t~~W~~~~~~~-~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
|+.+++-+-+.... ....||.. .+. ..+++++.-+.+++. -.++.-|.+|++-+.+..
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F-~i~-~~g~~Liaa~q~sd~---i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDF-NIN-PSGRFLIAANQKSDN---ITVFERDKETGRLTLLGR 332 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccc-eeC-CCCCEEEEEccCCCc---EEEEEEcCCCceEEeccc
Confidence 55666544443221 12335542 333 244555555554432 235556788888887765
No 131
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=63.50 E-value=1.9e+02 Score=29.94 Aligned_cols=189 Identities=19% Similarity=0.186 Sum_probs=89.4
Q ss_pred eEEEEEcCC--CeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC--eEEeccccCCCCCCCC
Q 009435 61 QVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH--TWISPSVRGEGPEARE 136 (535)
Q Consensus 61 ~~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~ 136 (535)
.+++||..+ ..|..-. .+ . ++..-.++..++.+|+.- ....++++|..+. .|+.-...+ ...+.
T Consensus 122 ~~y~ld~~~G~~~W~~~~-~~--~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~--~~~~~ 189 (370)
T COG1520 122 KLYALDASTGTLVWSRNV-GG--S-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP--LSLSI 189 (370)
T ss_pred eEEEEECCCCcEEEEEec-CC--C-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc--ccccc
Confidence 799999854 5788743 12 1 455555556677777664 1357899998865 487433111 12222
Q ss_pred CeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEecC-CCCC
Q 009435 137 GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGE-DGHD 213 (535)
Q Consensus 137 ~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~-~~~~ 213 (535)
....+..++.+|+- .. . +...++.+|+.++ .|+.-........... -...+....+|+-||. ..
T Consensus 190 ~~~~~~~~~~vy~~-~~-------~--~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~~~~~-- 256 (370)
T COG1520 190 YGSPAIASGTVYVG-SD-------G--YDGILYALNAEDGTLKWSQKVSQTIGRTAIS-TTPAVDGGPVYVDGGVYAG-- 256 (370)
T ss_pred ccCceeecceEEEe-cC-------C--CcceEEEEEccCCcEeeeeeeecccCccccc-ccccccCceEEECCcEEEE--
Confidence 22333444555553 31 1 1226888998654 6774321101110000 0112223344443331 10
Q ss_pred cccCceEEEECCCC--cEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEec
Q 009435 214 YYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (535)
Q Consensus 214 ~~~~~i~~yd~~t~--~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (535)
.....++++|..+. .|+.-........+.........++++|+........ ....+++++.
T Consensus 257 ~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~-~~~~~~~~~~ 319 (370)
T COG1520 257 SYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGR-GSGSLYALAD 319 (370)
T ss_pred ecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccc-cccceEEEec
Confidence 01233778887654 5876543000111112222222356777765433211 3455677775
No 132
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.12 E-value=1.5e+02 Score=28.84 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=95.8
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEEC--CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG--ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (535)
..+..+|..+++=.+-- .|. -..--++.++ ..+.+-|+++ ..+.++|..++..+.++ -+..++.+
T Consensus 81 k~v~vwDV~TGkv~Rr~-rgH----~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQ---ildea~D~ 147 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-RGH----LAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQ---ILDEAKDG 147 (307)
T ss_pred ceEEEEEcccCeeeeec-ccc----cceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccc---hhhhhcCc
Confidence 46889999887543310 011 0111233333 3477777764 46889999998887777 45677888
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccC
Q 009435 138 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLS 217 (535)
Q Consensus 138 hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~ 217 (535)
-..+.+.+..+|.|..+ ..+-.||+..++-..-. +..|.. ..+..-++...+.|-.+ .
T Consensus 148 V~Si~v~~heIvaGS~D-----------GtvRtydiR~G~l~sDy----~g~pit-~vs~s~d~nc~La~~l~------s 205 (307)
T KOG0316|consen 148 VSSIDVAEHEIVAGSVD-----------GTVRTYDIRKGTLSSDY----FGHPIT-SVSFSKDGNCSLASSLD------S 205 (307)
T ss_pred eeEEEecccEEEeeccC-----------CcEEEEEeecceeehhh----cCCcce-eEEecCCCCEEEEeecc------c
Confidence 88888888888887732 23556777655432111 111111 11112234444444332 2
Q ss_pred ceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 218 ~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
.+..+|-+|++--..- .|. ...-+---++..+..-.|++|..+. .+|+||+...+
T Consensus 206 tlrLlDk~tGklL~sY-kGh-kn~eykldc~l~qsdthV~sgSEDG-----~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSY-KGH-KNMEYKLDCCLNQSDTHVFSGSEDG-----KVYFWDLVDET 260 (307)
T ss_pred eeeecccchhHHHHHh-ccc-ccceeeeeeeecccceeEEeccCCc-----eEEEEEeccce
Confidence 3566676665422110 111 1111122244555566788887553 38999987764
No 133
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=60.13 E-value=2.4e+02 Score=30.14 Aligned_cols=176 Identities=16% Similarity=0.199 Sum_probs=86.1
Q ss_pred EEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEE
Q 009435 91 TTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (535)
Q Consensus 91 ~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~ 170 (535)
+..++.++++|+-+. -+-.+|..+..- +....+.--.-|++ ++...++.|++-|||+ -.+-.
T Consensus 119 ~~~d~t~l~s~sDd~-----v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYD-----------g~vrl 180 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDK-----VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYD-----------GKVRL 180 (487)
T ss_pred cccCCeEEEecCCCc-----eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCC-----------ceEEE
Confidence 345888999987532 233445555442 32322222222222 2333457899999974 34556
Q ss_pred EECCCc-cEEEeccCCCCCCCCCceeEEeeCCEEEE-EecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceee---
Q 009435 171 LNTETF-VWKRATTSGNPPSARDSHTCSSWKNKIIV-IGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH--- 245 (535)
Q Consensus 171 yd~~t~-~W~~~~~~~~~p~~r~~~s~~~~~~~lyv-~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~h--- 245 (535)
||+.+. .|..--.- ..|. . -.+..-.+.+++ .|| +.+-++|+.++. .++..+..|
T Consensus 181 ~DtR~~~~~v~elnh-g~pV--e-~vl~lpsgs~iasAgG--------n~vkVWDl~~G~--------qll~~~~~H~Kt 240 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNH-GCPV--E-SVLALPSGSLIASAGG--------NSVKVWDLTTGG--------QLLTSMFNHNKT 240 (487)
T ss_pred EEeccCCceeEEecC-CCce--e-eEEEcCCCCEEEEcCC--------CeEEEEEecCCc--------eehhhhhcccce
Confidence 677665 33322111 1111 1 111222334444 444 345566665332 122222222
Q ss_pred --EEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC
Q 009435 246 --STVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 246 --s~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
++... ++.-++-||.+. .+-+|| +..|+.+..... |.|-.+.+ ...++.-+++|..+..
T Consensus 241 VTcL~l~s~~~rLlS~sLD~------~VKVfd--~t~~Kvv~s~~~-~~pvLsia-----vs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDR------HVKVFD--TTNYKVVHSWKY-PGPVLSIA-----VSPDDQTVVIGMSNGL 302 (487)
T ss_pred EEEEEeecCCceEeeccccc------ceEEEE--ccceEEEEeeec-ccceeeEE-----ecCCCceEEEecccce
Confidence 12222 346777787754 378888 445777665432 33332222 1357788888887765
No 134
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=58.95 E-value=2.3e+02 Score=29.38 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=78.3
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE--ECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
++.+.+.||.+ +..|+++..++.|-- .++.-...-.++. .++.++.-|++++ .+.++...+.
T Consensus 75 ~~~l~aTGGgD------D~AflW~~~~ge~~~-----eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~stg 138 (399)
T KOG0296|consen 75 NNNLVATGGGD------DLAFLWDISTGEFAG-----ELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVSTG 138 (399)
T ss_pred CCceEEecCCC------ceEEEEEccCCccee-----EecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcccC
Confidence 55688889865 346888888888654 2333333334433 3677888888764 4555555543
Q ss_pred --eEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEE
Q 009435 121 --TWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (535)
Q Consensus 121 --~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~ 197 (535)
+|........+. - +... ...++++|-- ...+|.|.+.+..-.++- ..+..+......
T Consensus 139 ~~~~~~~~e~~die-W-----l~WHp~a~illAG~~-----------DGsvWmw~ip~~~~~kv~---~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIE-W-----LKWHPRAHILLAGST-----------DGSVWMWQIPSQALCKVM---SGHNSPCTCGEF 198 (399)
T ss_pred ceEEEeecccCceE-E-----EEecccccEEEeecC-----------CCcEEEEECCCcceeeEe---cCCCCCcccccc
Confidence 454432111110 0 0011 1245555552 245788888776444443 123334444444
Q ss_pred eeCCEEEEEecCCCCCcccCceEEEECCCCc
Q 009435 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (535)
Q Consensus 198 ~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~ 228 (535)
.-+++.++.|=.+ ..+.++|+++.+
T Consensus 199 ~pdGKr~~tgy~d------gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 199 IPDGKRILTGYDD------GTIIVWNPKTGQ 223 (399)
T ss_pred cCCCceEEEEecC------ceEEEEecCCCc
Confidence 4466666665432 247888998875
No 135
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=57.56 E-value=2e+02 Score=28.27 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=71.3
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCE-EEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGEN-LYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-Iyv~GG~~~~~~~~~~~~y 115 (535)
+..++..+.|+..||. ..+|+.|.++++.++.- .|. .-+-|+.+.-+.. =.+.|+-++ .+-++
T Consensus 120 m~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~-rGH---tDYvH~vv~R~~~~qilsG~EDG-----tvRvW 183 (325)
T KOG0649|consen 120 MWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY-RGH---TDYVHSVVGRNANGQILSGAEDG-----TVRVW 183 (325)
T ss_pred eEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE-cCC---cceeeeeeecccCcceeecCCCc-----cEEEE
Confidence 3444445568888873 36899999999987632 222 2244555543322 334555443 46677
Q ss_pred ECCCCeEEeccc---cCCCCCCCCCe--EEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCC
Q 009435 116 DTSSHTWISPSV---RGEGPEAREGH--SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (535)
Q Consensus 116 d~~t~~W~~~~~---~g~~p~~r~~h--s~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~ 190 (535)
|+.|.+-.++-. ..+...|-.+. .+...+..-.|+||- ..+-.+++.+.+-..+- |.+
T Consensus 184 d~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------------p~lslwhLrsse~t~vf-----pip 246 (325)
T KOG0649|consen 184 DTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------------PKLSLWHLRSSESTCVF-----PIP 246 (325)
T ss_pred eccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------------CceeEEeccCCCceEEE-----ecc
Confidence 877766543211 11222333443 444455667777771 12334455444333332 333
Q ss_pred CCceeEEeeCCEEEEEe
Q 009435 191 RDSHTCSSWKNKIIVIG 207 (535)
Q Consensus 191 r~~~s~~~~~~~lyv~G 207 (535)
-..|-+..+++++++.|
T Consensus 247 a~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 247 ARVHLVDFVDDCVLIGG 263 (325)
T ss_pred cceeEeeeecceEEEec
Confidence 33444555566665555
No 136
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=55.88 E-value=2.1e+02 Score=28.08 Aligned_cols=126 Identities=21% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeC-CEEEEEec
Q 009435 131 GPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIVIGG 208 (535)
Q Consensus 131 ~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~-~~lyv~GG 208 (535)
.+.|-.+.-... -.+.|+..|| ...+|..|+++++.+..- ..-.-+-|+.+..+ +-=++-|+
T Consensus 112 ~evPeINam~ldP~enSi~~AgG------------D~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 112 VEVPEINAMWLDPSENSILFAGG------------DGVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred ccCCccceeEeccCCCcEEEecC------------CeEEEEEEecCCEEEEEE----cCCcceeeeeeecccCcceeecC
Confidence 444444433333 2478999998 356889999999888763 12233456666543 33455666
Q ss_pred CCCCCcccCceEEEECCCCcEEEe-ecCCCCCCCc--eee--EEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 209 EDGHDYYLSDVHILDTDTLTWKEL-NTSGMVLSPR--AGH--STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~W~~v-~~~g~~p~~R--~~h--s~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
.++. +-++|++|.+=..+ .+...+..-| .+- .+...+..-+|.||... +-.+++...+-+.+
T Consensus 176 EDGt------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~-------lslwhLrsse~t~v 242 (325)
T KOG0649|consen 176 EDGT------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK-------LSLWHLRSSESTCV 242 (325)
T ss_pred CCcc------EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc-------eeEEeccCCCceEE
Confidence 6553 67789988765443 3221111222 332 44445555666776422 55666666655555
Q ss_pred ee
Q 009435 284 IT 285 (535)
Q Consensus 284 ~~ 285 (535)
-+
T Consensus 243 fp 244 (325)
T KOG0649|consen 243 FP 244 (325)
T ss_pred Ee
Confidence 43
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=55.78 E-value=3.4e+02 Score=30.40 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=59.6
Q ss_pred eeCCEEEEEecCCCCCcccCceEEEECCCC-cEEEeecCCCCCCCceeeEEE--EE-CCEEEEEeccCCCCCccCcEEEE
Q 009435 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTV--AF-GKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 198 ~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~v~~~g~~p~~R~~hs~v--~~-~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
.-++.++.+|-.... .++.+.+.-+ +-+.+. ..|..+...+.+ .+ +++++++- ....+++.+
T Consensus 391 SPdg~~Ia~st~~~~-----~iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~ 456 (691)
T KOG2048|consen 391 SPDGNLIAISTVSRT-----KIYRLQPDPNVKVINVD---DVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEF 456 (691)
T ss_pred CCCCCEEEEeeccce-----EEEEeccCcceeEEEec---cchhhhccceeeEEEecCceEEEEe------cccceeEEE
Confidence 336677777643221 2455544332 223333 366666544433 23 46666665 224458888
Q ss_pred ecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccc
Q 009435 274 DVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 334 (535)
Q Consensus 274 d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~ 334 (535)
+.++.+-+.+.....- +-+......+....+++|.+++++ .+++.+++...+
T Consensus 457 el~~ps~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~-------g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 457 ELETPSFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAISTR-------GQIFVYNLETLE 508 (691)
T ss_pred EecCcchhhhhccccc--cCCCcceeEEEcCCCCEEEEEecc-------ceEEEEEcccce
Confidence 8888777766543211 111111122233668888888744 357777766555
No 138
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=55.67 E-value=2.3e+02 Score=28.49 Aligned_cols=233 Identities=11% Similarity=0.034 Sum_probs=101.4
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcC-CCeEEEeeccCCCCCCCCceEEEEE-CC-EEEEEcCCCCCCCCCcE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV-NQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~-t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Iyv~GG~~~~~~~~~~ 112 (535)
..+..++++.||+.+. . .+.+..|+.. ++++..+. ..+.+..-+.++.. ++ .+|+.. .. .+.+
T Consensus 39 ~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~g~l~~~~---~~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v 104 (330)
T PRK11028 39 PMVISPDKRHLYVGVR-P-----EFRVLSYRIADDGALTFAA---ESPLPGSPTHISTDHQGRFLFSAS-YN----ANCV 104 (330)
T ss_pred cEEECCCCCEEEEEEC-C-----CCcEEEEEECCCCceEEee---eecCCCCceEEEECCCCCEEEEEE-cC----CCeE
Confidence 3444556777777543 1 1456677765 45665443 12222111222222 34 466654 21 2567
Q ss_pred EEEECCCCe-E-EeccccCCCCCCCCCeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCc-cEEEecc-CCC
Q 009435 113 HILDTSSHT-W-ISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATT-SGN 186 (535)
Q Consensus 113 ~~yd~~t~~-W-~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~-~W~~~~~-~~~ 186 (535)
.+||+.++. . .... ..+....-|.++.. + +.+|+..- ..+.+.+||+.+. ....... ...
T Consensus 105 ~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~~-----------~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPCL-----------KEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred EEEEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEEeeC-----------CCCEEEEEEECCCCcccccCCCcee
Confidence 788875431 1 1111 11122223444443 3 35666432 1356888888653 2221000 000
Q ss_pred CCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECC--CCcEEEeecCCCCC----CCceeeEEEEE--CCEEEE
Q 009435 187 PPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVL----SPRAGHSTVAF--GKNLFV 256 (535)
Q Consensus 187 ~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~~v~~~g~~p----~~R~~hs~v~~--~~~iyv 256 (535)
.+....-+.++.. +..+|+.-. ..+.+.+||+. +.+.+.+......| .+|....+... +..+|+
T Consensus 171 ~~~g~~p~~~~~~pdg~~lyv~~~------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 171 TVEGAGPRHMVFHPNQQYAYCVNE------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred cCCCCCCceEEECCCCCEEEEEec------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 1111111223333 346777633 23567777765 45554443322122 23433233333 235666
Q ss_pred EeccCCCCCccCcEEEEecC--CCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEc
Q 009435 257 FGGFTDSQNLYDDLYMIDVD--SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (535)
Q Consensus 257 ~GG~~~~~~~~~dv~~yd~~--~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (535)
... ..+.+.+|++. ...++.+........+|.. .+. ..+..||+..
T Consensus 245 ~~~------~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~----~~~-~dg~~l~va~ 292 (330)
T PRK11028 245 CDR------TASLISVFSVSEDGSVLSFEGHQPTETQPRGF----NID-HSGKYLIAAG 292 (330)
T ss_pred ecC------CCCeEEEEEEeCCCCeEEEeEEEeccccCCce----EEC-CCCCEEEEEE
Confidence 422 13457777764 3455544433222333321 121 3456677654
No 139
>PRK10115 protease 2; Provisional
Probab=55.38 E-value=3.7e+02 Score=30.71 Aligned_cols=217 Identities=11% Similarity=0.034 Sum_probs=105.0
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeE--EEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW--SQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W--~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~ 113 (535)
.+-..+++.||+. ..........++|++++.+..- ..+- . . +......+.... +++..++.... ...+.++
T Consensus 177 ~~w~~D~~~~~y~-~~~~~~~~~~~v~~h~lgt~~~~d~lv~-~-e-~~~~~~~~~~~s~d~~~l~i~~~~--~~~~~~~ 250 (686)
T PRK10115 177 FVWANDSWTFYYV-RKHPVTLLPYQVWRHTIGTPASQDELVY-E-E-KDDTFYVSLHKTTSKHYVVIHLAS--ATTSEVL 250 (686)
T ss_pred EEEeeCCCEEEEE-EecCCCCCCCEEEEEECCCChhHCeEEE-e-e-CCCCEEEEEEEcCCCCEEEEEEEC--CccccEE
Confidence 3333455545443 3322212347899999988732 2221 1 1 111222233333 44433343322 2336788
Q ss_pred EEEC--CCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECC-CccEEEeccCCCCCCC
Q 009435 114 ILDT--SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNPPSA 190 (535)
Q Consensus 114 ~yd~--~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~-t~~W~~~~~~~~~p~~ 190 (535)
.|+. .+..|..+. +.+. .........++.+|+.--.+ .....+...++. ...|+.+-... ..
T Consensus 251 l~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~ly~~tn~~--------~~~~~l~~~~~~~~~~~~~l~~~~---~~ 315 (686)
T PRK10115 251 LLDAELADAEPFVFL---PRRK-DHEYSLDHYQHRFYLRSNRH--------GKNFGLYRTRVRDEQQWEELIPPR---EN 315 (686)
T ss_pred EEECcCCCCCceEEE---ECCC-CCEEEEEeCCCEEEEEEcCC--------CCCceEEEecCCCcccCeEEECCC---CC
Confidence 8884 334443222 1111 11123334457888875431 112336667776 57898886221 12
Q ss_pred CCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE---EC-CE-EEEEeccCCCCC
Q 009435 191 RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA---FG-KN-LFVFGGFTDSQN 265 (535)
Q Consensus 191 r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~---~~-~~-iyv~GG~~~~~~ 265 (535)
+.--.+...++.|++..-.++ ...++++|..+.....+.. +.+........ .+ +. ++.+.+..
T Consensus 316 ~~i~~~~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ss~~---- 383 (686)
T PRK10115 316 IMLEGFTLFTDWLVVEERQRG----LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGYSSMT---- 383 (686)
T ss_pred CEEEEEEEECCEEEEEEEeCC----EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEEecCC----
Confidence 222234445777777654433 3458888877666555431 22222211111 11 23 33344433
Q ss_pred ccCcEEEEecCCCcEEEEeeC
Q 009435 266 LYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~~ 286 (535)
.-.++|.||+.+.+|+.+...
T Consensus 384 ~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 384 TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred CCCEEEEEECCCCcEEEEEec
Confidence 246799999999998887653
No 140
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=54.53 E-value=3.1e+02 Score=29.56 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=95.8
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCc-------------eEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEecc
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDS-------------HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPS 126 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~-------------hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 126 (535)
.++|.|||.+..-+++.+. +|..|.- .-+.+-++.|-++. -...+++++..+--.++.
T Consensus 287 GdIylydP~td~lekldI~--lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv~ 357 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIG--LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQVG 357 (668)
T ss_pred CcEEEeCCCcCcceeeecC--CccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEcC
Confidence 5799999999999998852 3332211 01111233332221 124555555443333332
Q ss_pred ccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEE
Q 009435 127 VRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVI 206 (535)
Q Consensus 127 ~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~ 206 (535)
....-|+.+ ...++.-.|+|-.+ -+.+.+||..+..-+++. .+..+.....+.-+++.++.
T Consensus 358 ---~~~~VrY~r--~~~~~e~~vigt~d----------gD~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~vv 418 (668)
T COG4946 358 ---KKGGVRYRR--IQVDPEGDVIGTND----------GDKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVVV 418 (668)
T ss_pred ---CCCceEEEE--EccCCcceEEeccC----------CceEEEEecCCceEEEee----CCccceEEEEEcCCCcEEEE
Confidence 111122222 22334456665532 135778888888877765 23444444444446676666
Q ss_pred ecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceee--EEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEe
Q 009435 207 GGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH--STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 207 GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~h--s~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (535)
+-.. -++|++|++++.-+.+... |.+. -.+.+.+.-++.=++. .+-+...+.+||+..++-..+.
T Consensus 419 aNdr------~el~vididngnv~~idkS------~~~lItdf~~~~nsr~iAYafP-~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 419 ANDR------FELWVIDIDNGNVRLIDKS------EYGLITDFDWHPNSRWIAYAFP-EGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EcCc------eEEEEEEecCCCeeEeccc------ccceeEEEEEcCCceeEEEecC-cceeeeeEEEEecCCCeEEEec
Confidence 4422 3599999999988877541 1111 1222333333333332 2334556888888887666554
Q ss_pred e
Q 009435 285 T 285 (535)
Q Consensus 285 ~ 285 (535)
+
T Consensus 486 T 486 (668)
T COG4946 486 T 486 (668)
T ss_pred C
Confidence 3
No 141
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.97 E-value=2.1e+02 Score=27.50 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=87.1
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCC-CCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P-~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t 119 (535)
+++||.--|.-+. +.+.++|..+. .|++ .++ ..-.+-+.+.+++.+|..-=.+ .-.+.||..+
T Consensus 55 ~g~i~esTG~yg~----S~ir~~~L~~gq~~~s~-----~l~~~~~FgEGit~~gd~~y~LTw~e-----gvaf~~d~~t 120 (262)
T COG3823 55 DGHILESTGLYGF----SKIRVSDLTTGQEIFSE-----KLAPDTVFGEGITKLGDYFYQLTWKE-----GVAFKYDADT 120 (262)
T ss_pred CCEEEEecccccc----ceeEEEeccCceEEEEe-----ecCCccccccceeeccceEEEEEecc-----ceeEEEChHH
Confidence 4467776665432 57889998854 5665 333 3456677888899999875222 2356777655
Q ss_pred CeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE-E--eccCCCCCCCCCceeE
Q 009435 120 HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-R--ATTSGNPPSARDSHTC 196 (535)
Q Consensus 120 ~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~-~--~~~~~~~p~~r~~~s~ 196 (535)
-+ ..+..+.+-.+-+.+..+.+|++--| ...++.-||++..-. . ++..+. |. +.---.
T Consensus 121 ~~-----~lg~~~y~GeGWgLt~d~~~LimsdG------------satL~frdP~tfa~~~~v~VT~~g~-pv-~~LNEL 181 (262)
T COG3823 121 LE-----ELGRFSYEGEGWGLTSDDKNLIMSDG------------SATLQFRDPKTFAELDTVQVTDDGV-PV-SKLNEL 181 (262)
T ss_pred hh-----hhcccccCCcceeeecCCcceEeeCC------------ceEEEecCHHHhhhcceEEEEECCe-ec-ccccce
Confidence 32 22344555567778888888888777 344555677654322 1 121111 11 111112
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCCc---EEEeec
Q 009435 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT---WKELNT 234 (535)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~---W~~v~~ 234 (535)
-.+++.+|.= -...+.|.+.||++++ |..++.
T Consensus 182 E~VdG~lyAN------Vw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 182 EWVDGELYAN------VWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred eeeccEEEEe------eeeecceEEEcCCCCcEEEEEEccC
Confidence 2335555531 1135678999999885 777664
No 142
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=49.37 E-value=2.6e+02 Score=27.18 Aligned_cols=228 Identities=18% Similarity=0.252 Sum_probs=104.4
Q ss_pred CCeEEEeeccCCCC--CCCCceEEEEE--CCEEEEEc--CCCCC--CCCCcEEEEECC-CCeEEeccccC-----CCCCC
Q 009435 69 NQTWSQPVIKGSPP--TPRDSHSCTTV--GENLYVFG--GTDGM--NPLRDLHILDTS-SHTWISPSVRG-----EGPEA 134 (535)
Q Consensus 69 t~~W~~l~~~g~~P--~~R~~hs~~~~--~~~Iyv~G--G~~~~--~~~~~~~~yd~~-t~~W~~~~~~g-----~~p~~ 134 (535)
..+|..+......+ ..+....+.+. +++|++|- +.... ....-.+....+ -.+|....... ..+.+
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGP 108 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEEC
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceecc
Confidence 46899866433434 23333334443 78888885 22211 111112344444 35798764211 11122
Q ss_pred CCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEE-CCCccEEEeccCCCCCCCCCce-eEEee-CCEEEEEecCCC
Q 009435 135 REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILN-TETFVWKRATTSGNPPSARDSH-TCSSW-KNKIIVIGGEDG 211 (535)
Q Consensus 135 r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd-~~t~~W~~~~~~~~~p~~r~~~-s~~~~-~~~lyv~GG~~~ 211 (535)
-....+...++++++. .+.. .... ...+..+. -.-.+|+...... ....... +.+.. ++.|+++--..
T Consensus 109 ~~~~~i~~~~G~l~~~-~~~~----~~~~-~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~- 179 (275)
T PF13088_consen 109 GRGPPIQLPDGRLIAP-YYHE----SGGS-FSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE- 179 (275)
T ss_dssp SEEEEEEECTTEEEEE-EEEE----SSCE-EEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-
T ss_pred ceeeeeEecCCCEEEE-Eeec----cccC-cceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-
Confidence 2222244447787776 2111 1111 23333344 4456799887432 1112222 23322 67888775432
Q ss_pred CCcccCceEEEECC-CCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCC
Q 009435 212 HDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG 289 (535)
Q Consensus 212 ~~~~~~~i~~yd~~-t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~ 289 (535)
... .-.+.+... ..+|+...... .|.+.....++.. +++++++..... ....-.+++-.-...+|..+......
T Consensus 180 ~~~--~~~~~~S~D~G~TWs~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~-~r~~l~l~~S~D~g~tW~~~~~i~~~ 255 (275)
T PF13088_consen 180 GND--DIYISRSTDGGRTWSPPQPTN-LPNPNSSISLVRLSDGRLLLVYNNPD-GRSNLSLYVSEDGGKTWSRPKTIDDG 255 (275)
T ss_dssp SST--EEEEEEESSTTSS-EEEEEEE-CSSCCEEEEEEECTTSEEEEEEECSS-TSEEEEEEEECTTCEEEEEEEEEEEE
T ss_pred CCC--cEEEEEECCCCCcCCCceecc-cCcccCCceEEEcCCCCEEEEEECCC-CCCceEEEEEeCCCCcCCccEEEeCC
Confidence 111 223333343 45799866322 4555655555554 467777777321 11122244444446789876554333
Q ss_pred CCCceeeeeeeecccCCCEEEE
Q 009435 290 PSARFSVAGDCLDPLKGGVLVF 311 (535)
Q Consensus 290 p~~r~~~~~~~~~~~~~~~l~v 311 (535)
+...++....+. ..++.|+|
T Consensus 256 ~~~~~~Y~~~~~--~~dg~l~i 275 (275)
T PF13088_consen 256 PNGDSGYPSLTQ--LPDGKLYI 275 (275)
T ss_dssp E-CCEEEEEEEE--EETTEEEE
T ss_pred CCCcEECCeeEE--eCCCcCCC
Confidence 422333332222 45677765
No 143
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=48.64 E-value=3.4e+02 Score=28.41 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=57.4
Q ss_pred CCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccc--cCCCCCCC--CCeEEEEEC
Q 009435 69 NQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSV--RGEGPEAR--EGHSAALVG 144 (535)
Q Consensus 69 t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~--~g~~p~~r--~~hs~~~~~ 144 (535)
.+.|+.+. . ..-..--++..+|++|++.- ...++.++..-. -.+..+ .+++...+ ...-.+...
T Consensus 189 ~~~Wt~l~---~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~ 256 (373)
T PLN03215 189 GNVLKALK---Q--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECC 256 (373)
T ss_pred CCeeeEcc---C--CCceeeEEEEECCEEEEEcC------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEEC
Confidence 48999875 2 22335567788999999831 245777763211 111110 01111111 123355667
Q ss_pred CEEEEEcCCCCCCCC--------CCceeeeeEEEEECCCccEEEeccCC
Q 009435 145 KRLFIFGGCGKSSNT--------NDEVYYNDLYILNTETFVWKRATTSG 185 (535)
Q Consensus 145 ~~lyv~GG~~~~~~~--------~~~~~~n~v~~yd~~t~~W~~~~~~~ 185 (535)
+.|+++..+...... ......-.|+++|.+..+|.++...+
T Consensus 257 GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 257 GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 889988875321100 01123346778898899999998654
No 144
>PRK01742 tolB translocation protein TolB; Provisional
Probab=48.47 E-value=3.6e+02 Score=28.56 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=69.0
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~ 189 (535)
..++++|+.+.+-+.+.. .+.. .......-+++.++++.. ..+ ..++|.+|+.+.....+... ..
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~-~~~~~wSPDG~~La~~~~-----~~g---~~~Iy~~d~~~~~~~~lt~~---~~ 292 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH-NGAPAFSPDGSRLAFASS-----KDG---VLNIYVMGANGGTPSQLTSG---AG 292 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc-cCceeECCCCCEEEEEEe-----cCC---cEEEEEEECCCCCeEeeccC---CC
Confidence 468999998876554431 1111 111222234544444331 011 13589999988877776522 11
Q ss_pred CCCceeEEeeCCE-EEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCE-EEEEeccCCCCCcc
Q 009435 190 ARDSHTCSSWKNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKN-LFVFGGFTDSQNLY 267 (535)
Q Consensus 190 ~r~~~s~~~~~~~-lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~-iyv~GG~~~~~~~~ 267 (535)
. .......-+++ |++.....+ ..++|.++..+..-+.+... . . .....-+++ |++.++
T Consensus 293 ~-~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~~-----~-~-~~~~SpDG~~ia~~~~-------- 352 (429)
T PRK01742 293 N-NTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGGR-----G-Y-SAQISADGKTLVMING-------- 352 (429)
T ss_pred C-cCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecCC-----C-C-CccCCCCCCEEEEEcC--------
Confidence 1 11112222444 444432222 23678888766544443211 1 1 112222444 444433
Q ss_pred CcEEEEecCCCcEEEEe
Q 009435 268 DDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 268 ~dv~~yd~~~~~W~~l~ 284 (535)
+.++++|+.++.+..+.
T Consensus 353 ~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred CCEEEEECCCCCeEEec
Confidence 35888999999888764
No 145
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.28 E-value=1.3e+02 Score=29.47 Aligned_cols=120 Identities=19% Similarity=0.278 Sum_probs=67.2
Q ss_pred CCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEee-c------------cCCCCCCCCceEEEEEC
Q 009435 28 GPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-I------------KGSPPTPRDSHSCTTVG 94 (535)
Q Consensus 28 ~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~-~------------~g~~P~~R~~hs~~~~~ 94 (535)
.|.+-..|..+.- -+=++-||++. +-.+|.||-. +|..-. + .+..-.++...+.+.-+
T Consensus 162 ~~g~~~~~~~~~~---~krlvSgGcDn----~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 162 APGSLVDQGPAAK---VKRLVSGGCDN----LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred CCccccccCcccc---cceeeccCCcc----ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 3444444443332 13478899863 2456776643 665311 1 11222345555555556
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECC
Q 009435 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE 174 (535)
Q Consensus 95 ~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~ 174 (535)
++++|+ .-+...++|+..... +.|.+.+..+-...++-|-|-|| .|.+.++-..
T Consensus 233 g~viIw-------------t~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~G------------dNkvtlwke~ 286 (299)
T KOG1332|consen 233 GTVIIW-------------TKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGG------------DNKVTLWKEN 286 (299)
T ss_pred CcEEEE-------------EecCccCcccccccc-cCCcceEEEEEeccccEEEEecC------------CcEEEEEEeC
Confidence 666554 333445678643221 46667666666667777777777 3566666555
Q ss_pred C-ccEEEec
Q 009435 175 T-FVWKRAT 182 (535)
Q Consensus 175 t-~~W~~~~ 182 (535)
. ++|+++.
T Consensus 287 ~~Gkw~~v~ 295 (299)
T KOG1332|consen 287 VDGKWEEVG 295 (299)
T ss_pred CCCcEEEcc
Confidence 4 5899886
No 146
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=48.19 E-value=1.6e+02 Score=32.31 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=67.9
Q ss_pred CcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEEC--CEEEEEcCCCCC
Q 009435 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG--ENLYVFGGTDGM 106 (535)
Q Consensus 29 P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~Iyv~GG~~~~ 106 (535)
-.|+.|.-++.-..+-.||+.|- ..++|++|.+.+.|-.+ ...--..--++.++ +.++.+||.+
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P-----~~~~~~~lN~v~in~~hgLla~Gt~~-- 196 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNP-----FETDSGELNVVSINEEHGLLACGTED-- 196 (703)
T ss_pred ecCcCCccccccCCCccEEEeec-------CcceEEEEccccccccc-----cccccccceeeeecCccceEEecccC--
Confidence 34666666666555555777543 25799999999999872 21111222333343 4588888864
Q ss_pred CCCCcEEEEECCCCeE-EeccccC---CCCCCCCC--eEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE
Q 009435 107 NPLRDLHILDTSSHTW-ISPSVRG---EGPEAREG--HSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (535)
Q Consensus 107 ~~~~~~~~yd~~t~~W-~~~~~~g---~~p~~r~~--hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~ 179 (535)
..++.+|+.+.+- ..+.... ..|..-.. .++....+ -|-+.=|. ....+++||+.+.+=-
T Consensus 197 ---g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt----------s~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 197 ---GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT----------STGSVLIYDLRASKPL 263 (703)
T ss_pred ---ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec----------cCCcEEEEEcccCCce
Confidence 3577788765431 2222111 12222122 23333333 55554452 1346889999876533
Q ss_pred E
Q 009435 180 R 180 (535)
Q Consensus 180 ~ 180 (535)
.
T Consensus 264 ~ 264 (703)
T KOG2321|consen 264 L 264 (703)
T ss_pred e
Confidence 3
No 147
>PRK10115 protease 2; Provisional
Probab=48.05 E-value=4.7e+02 Score=29.83 Aligned_cols=168 Identities=8% Similarity=-0.023 Sum_probs=81.6
Q ss_pred CCEEEEEcCCCCC-CCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEE
Q 009435 94 GENLYVFGGTDGM-NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (535)
Q Consensus 94 ~~~Iyv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~y 171 (535)
+++-+++.-.+.. ..-.++|++++.|..-....+... +........... +++..++.... ...+.++.|
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~--------~~~~~~~l~ 252 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLAS--------ATTSEVLLL 252 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEEC--------CccccEEEE
Confidence 4443444433322 244789999999874321111101 111222233333 34433343321 123567777
Q ss_pred EC--CCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECC-CCcEEEeecCCCCCCCceeeEEE
Q 009435 172 NT--ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTV 248 (535)
Q Consensus 172 d~--~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~v~~~g~~p~~R~~hs~v 248 (535)
+. .+..|..+.. .+ ..........++.+|+.--.+.. ...+...++. ...|+.+-.. ...+.--.+.
T Consensus 253 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~ly~~tn~~~~---~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~ 322 (686)
T PRK10115 253 DAELADAEPFVFLP---RR-KDHEYSLDHYQHRFYLRSNRHGK---NFGLYRTRVRDEQQWEELIPP---RENIMLEGFT 322 (686)
T ss_pred ECcCCCCCceEEEE---CC-CCCEEEEEeCCCEEEEEEcCCCC---CceEEEecCCCcccCeEEECC---CCCCEEEEEE
Confidence 73 3344433321 11 12222333446788887544322 2347777776 6789988652 1122223344
Q ss_pred EECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEe
Q 009435 249 AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 249 ~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (535)
..++.+++..-... ...++++|..+.....+.
T Consensus 323 ~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 323 LFTDWLVVEERQRG----LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EECCEEEEEEEeCC----EEEEEEEcCCCCceEEec
Confidence 45777777654322 345888887666655553
No 148
>PLN00181 protein SPA1-RELATED; Provisional
Probab=46.64 E-value=5.2e+02 Score=29.91 Aligned_cols=173 Identities=12% Similarity=0.129 Sum_probs=78.7
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEE-eccccCCCCCCCCC
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWI-SPSVRGEGPEAREG 137 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~ 137 (535)
.+.+||..+++-...- .+. ...-.+++.. ++.+++.||.++ .+.+||+.+..-. .+.. . ..
T Consensus 556 ~v~lWd~~~~~~~~~~-~~H---~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~----~---~~ 619 (793)
T PLN00181 556 VVQVWDVARSQLVTEM-KEH---EKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKT----K---AN 619 (793)
T ss_pred eEEEEECCCCeEEEEe-cCC---CCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEec----C---CC
Confidence 4667777665433211 111 1112223332 456778887653 4788888765422 1110 0 11
Q ss_pred eEEEE---ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc--EEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCC
Q 009435 138 HSAAL---VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH 212 (535)
Q Consensus 138 hs~~~---~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~--W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~ 212 (535)
...+. .++.+++.|+. ...+.+||+.+.. ...+.. . ...-..+...++..++.|+.++
T Consensus 620 v~~v~~~~~~g~~latgs~-----------dg~I~iwD~~~~~~~~~~~~~--h---~~~V~~v~f~~~~~lvs~s~D~- 682 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSA-----------DHKVYYYDLRNPKLPLCTMIG--H---SKTVSYVRFVDSSTLVSSSTDN- 682 (793)
T ss_pred eEEEEEeCCCCCEEEEEeC-----------CCeEEEEECCCCCccceEecC--C---CCCEEEEEEeCCCEEEEEECCC-
Confidence 11221 13567777773 2467888886542 111110 0 0011122223556667776543
Q ss_pred CcccCceEEEECCCC----cEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 213 DYYLSDVHILDTDTL----TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 213 ~~~~~~i~~yd~~t~----~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
.+.+||+... .|..+.... ..............+.+++.|+.+. .+.+|+....
T Consensus 683 -----~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~D~------~v~iw~~~~~ 740 (793)
T PLN00181 683 -----TLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETN------EVFVYHKAFP 740 (793)
T ss_pred -----EEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeCCC------EEEEEECCCC
Confidence 3677777542 232222100 0011111122233466777777532 3777776543
No 149
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=45.57 E-value=4.4e+02 Score=28.73 Aligned_cols=200 Identities=18% Similarity=0.271 Sum_probs=92.1
Q ss_pred ECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCC----CCCCCCeEEEEEC-------CEEEEEcCCCCCCCCCC
Q 009435 93 VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEG----PEAREGHSAALVG-------KRLFIFGGCGKSSNTND 161 (535)
Q Consensus 93 ~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~----p~~r~~hs~~~~~-------~~lyv~GG~~~~~~~~~ 161 (535)
.++.|+++-|. ...-+||-.-.+|.+... |+. ....-+|.+.+.. ...|+--+++
T Consensus 225 Tg~~iLvvsg~------aqakl~DRdG~~~~e~~K-GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D------- 290 (641)
T KOG0772|consen 225 TGDQILVVSGS------AQAKLLDRDGFEIVEFSK-GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD------- 290 (641)
T ss_pred CCCeEEEEecC------cceeEEccCCceeeeeec-cchhhhhhhccCCceeeeeccccccCcccceEEecCC-------
Confidence 36778888774 455666666666654331 210 1122355544332 2345544422
Q ss_pred ceeeeeEEEEECCC--ccEEEeccCCCCCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeec--C
Q 009435 162 EVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT--S 235 (535)
Q Consensus 162 ~~~~n~v~~yd~~t--~~W~~~~~~~~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~--~ 235 (535)
..+-++|... .+-+.+.+. .....|...+.|.+ ++++ |.+|+... .|..++.. .|..-.. .
T Consensus 291 ----gtlRiWdv~~~k~q~qVik~k-~~~g~Rv~~tsC~~nrdg~~-iAagc~DG-----SIQ~W~~~--~~~v~p~~~v 357 (641)
T KOG0772|consen 291 ----GTLRIWDVNNTKSQLQVIKTK-PAGGKRVPVTSCAWNRDGKL-IAAGCLDG-----SIQIWDKG--SRTVRPVMKV 357 (641)
T ss_pred ----CcEEEEecCCchhheeEEeec-cCCCcccCceeeecCCCcch-hhhcccCC-----ceeeeecC--CcccccceEe
Confidence 1122233322 222223222 22345555555555 4555 66665443 25555542 2322111 0
Q ss_pred CCCCCCceeeEEE--EECCEEEEEeccCCCCCccCcEEEEecCCC-----cEEEEeeCCCCCCCceeeeeeeecccCCCE
Q 009435 236 GMVLSPRAGHSTV--AFGKNLFVFGGFTDSQNLYDDLYMIDVDSG-----LWTKVITTGEGPSARFSVAGDCLDPLKGGV 308 (535)
Q Consensus 236 g~~p~~R~~hs~v--~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~-----~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~ 308 (535)
.....+-..-+++ ..++++++--|..+ .+-+||+... +|+-|.. ++...-+|+ ..+.+
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~LlSRg~D~------tLKvWDLrq~kkpL~~~tgL~t-------~~~~tdc~F--SPd~k 422 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNYLLSRGFDD------TLKVWDLRQFKKPLNVRTGLPT-------PFPGTDCCF--SPDDK 422 (641)
T ss_pred eeccCCCCceeEEEeccccchhhhccCCC------ceeeeeccccccchhhhcCCCc-------cCCCCcccc--CCCce
Confidence 1111222223333 34566666656543 3667776543 3544432 222233344 46788
Q ss_pred EEEEcccCCCCCccCcEEEEeccccc
Q 009435 309 LVFIGGCNKSLEALDDMYYLYTGLVN 334 (535)
Q Consensus 309 l~v~GG~~~~~~~~~dv~~l~~~~~~ 334 (535)
|++.|-.......-..++.|+.-+..
T Consensus 423 li~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred EEEecccccCCCCCceEEEEecccee
Confidence 99988655444444456666654443
No 150
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=45.32 E-value=4.1e+02 Score=28.36 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=67.2
Q ss_pred eeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeC-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCce
Q 009435 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 243 (535)
Q Consensus 165 ~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~ 243 (535)
..++|.+|+.+..-.++... .....+....-+ .+|+..-...+ ..+++++|++...=+.+...+ ...
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~----~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~----~~~ 328 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNG----FGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSG----GGN 328 (425)
T ss_pred CccEEEEcCCCCcceecccC----CccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccC----CCC
Confidence 46799999988774444311 112222222224 44444422222 238999999988877765421 111
Q ss_pred eeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc-EEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccC
Q 009435 244 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL-WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (535)
Q Consensus 244 ~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~-W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (535)
.+-...-+++.++|-+... +. -++..+|+.++. |..+......-.+... .++..++.++|..
T Consensus 329 ~~p~~SpdG~~i~~~~~~~-g~--~~i~~~~~~~~~~~~~lt~~~~~e~ps~~--------~ng~~i~~~s~~~ 391 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSG-GQ--WDIDKNDLASGGKIRILTSTYLNESPSWA--------PNGRMIMFSSGQG 391 (425)
T ss_pred cCccCCCCCCEEEEEeccC-Cc--eeeEEeccCCCCcEEEccccccCCCCCcC--------CCCceEEEeccCC
Confidence 1333333444444433321 22 568899998777 8887654322222222 2355566666554
No 151
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=42.17 E-value=34 Score=26.68 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=30.7
Q ss_pred eeeeEeeeecCCceeEEEeEcCceeeeeee--------ecCCCCccccc
Q 009435 398 TFQAKVTESFPLGYTIETTIDGKPLRGILF--------ANKPTSASTTN 438 (535)
Q Consensus 398 ~f~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 438 (535)
..++.|..+-+|||.++.-|+| +.|+|. .+++|....+.
T Consensus 7 ~v~g~V~si~d~G~~v~~g~~g--v~Gfl~~~~~~~~~~~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHGYILDIGIPG--TTGFLPKKDAGNFSKLKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCEEEEEeCCCC--cEEEEEHHHCCcccccCCCCEEEEE
Confidence 5889999999999999988887 789885 34666555443
No 152
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=42.12 E-value=2.2e+02 Score=26.77 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=44.4
Q ss_pred CCCCCcccCceEEEECCCCcEEEeecCCC--CCCCceeeEEEEECCEE-EEEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 209 EDGHDYYLSDVHILDTDTLTWKELNTSGM--VLSPRAGHSTVAFGKNL-FVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~W~~v~~~g~--~p~~R~~hs~v~~~~~i-yv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
.+....-..+||++|..++.|..+..... ...|. ...-.-+..| +|+|-.-+.-.--..||+|++.++.-..+..
T Consensus 80 ~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 80 PEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred CccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 33334456789999999988877654221 22344 2222333444 4444322211123569999999999888876
Q ss_pred C
Q 009435 286 T 286 (535)
Q Consensus 286 ~ 286 (535)
.
T Consensus 158 ~ 158 (200)
T PF15525_consen 158 W 158 (200)
T ss_pred c
Confidence 5
No 153
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=40.99 E-value=4.5e+02 Score=27.56 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=52.2
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccC--CCCCCC--CCce
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS--GNPPSA--RDSH 194 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~--~~~p~~--r~~~ 194 (535)
.+.|+.++ . .....--++.++|++|++.- ...++.++... .-.++.+. ..+... +...
T Consensus 189 ~~~Wt~l~---~--~~~~~~DIi~~kGkfYAvD~------------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~ 250 (373)
T PLN03215 189 GNVLKALK---Q--MGYHFSDIIVHKGQTYALDS------------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDR 250 (373)
T ss_pred CCeeeEcc---C--CCceeeEEEEECCEEEEEcC------------CCeEEEEecCC-ceeeecceecccccCCcccCce
Confidence 48999876 2 22234567888999999843 12355555321 11121110 011111 1123
Q ss_pred eEEeeCCEEEEEecCCCCC-------------cccCceEEEECCCCcEEEeec
Q 009435 195 TCSSWKNKIIVIGGEDGHD-------------YYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 195 s~~~~~~~lyv~GG~~~~~-------------~~~~~i~~yd~~t~~W~~v~~ 234 (535)
-.+...+.|+++....... ...=.++.+|.+..+|.++..
T Consensus 251 yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~s 303 (373)
T PLN03215 251 RFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKT 303 (373)
T ss_pred eEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecc
Confidence 3555577888887642111 011246677888999999886
No 154
>smart00284 OLF Olfactomedin-like domains.
Probab=37.56 E-value=4.2e+02 Score=26.20 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=95.1
Q ss_pred CEEEEECCcCCCCCCcceEEEEEc----CCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDT----VNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~----~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t 119 (535)
+++|++-+.+. ..+.++.|.. ....+.+. -.+|.+-.+.+.++.++.+|.--. ....+.+||+.+
T Consensus 35 ~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~---~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t 103 (255)
T smart00284 35 SLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTD---HPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTT 103 (255)
T ss_pred ceEEEEccccC---CCcEEEEecCHHHHhccCCceE---EECCCccccccEEEECceEEEEec-----CCccEEEEECCC
Confidence 46788766542 1244666643 22333321 145777888889999999998543 247899999999
Q ss_pred CeEE---eccccC---CCCCCCCC---eEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc----cEEEeccCCC
Q 009435 120 HTWI---SPSVRG---EGPEAREG---HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF----VWKRATTSGN 186 (535)
Q Consensus 120 ~~W~---~~~~~g---~~p~~r~~---hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~----~W~~~~~~~~ 186 (535)
++-. .++..+ ..+-...+ .-.++.++-|+|+=.... ..+.. .|-++|+.+- +|..-
T Consensus 104 ~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~---~~g~i---vvSkLnp~tL~ve~tW~T~----- 172 (255)
T smart00284 104 ETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ---NAGKI---VISKLNPATLTIENTWITT----- 172 (255)
T ss_pred CcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC---CCCCE---EEEeeCcccceEEEEEEcC-----
Confidence 8754 222110 11111111 123344455666632111 11112 2335566553 44431
Q ss_pred CCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCce-eeEEEEE---CCEEEEE
Q 009435 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA-GHSTVAF---GKNLFVF 257 (535)
Q Consensus 187 ~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~-~hs~v~~---~~~iyv~ 257 (535)
. ..+....+.++-+.||+.-..... ...-.+.||+.+.+=..+.. +...|. .++++.. +.+||+.
T Consensus 173 ~-~k~sa~naFmvCGvLY~~~s~~~~--~~~I~yayDt~t~~~~~~~i---~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 173 Y-NKRSASNAFMICGILYVTRSLGSK--GEKVFYAYDTNTGKEGHLDI---PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred C-CcccccccEEEeeEEEEEccCCCC--CcEEEEEEECCCCccceeee---eeccccccceeceeCCCCCeEEEE
Confidence 1 223333455566788888532211 12336889998876444432 222333 3445544 3567775
No 155
>PTZ00421 coronin; Provisional
Probab=36.80 E-value=5.9e+02 Score=27.74 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=32.7
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEE-EECCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCT-TVGENLYVFGGTDGMNPLRDLHILDTSSHT 121 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (535)
.+++.||.+ ..+.+||..+.+-...- .+ ... .-.++. .-++.+++.|+.+ ..+.+||+.+.+
T Consensus 139 ~iLaSgs~D------gtVrIWDl~tg~~~~~l-~~-h~~--~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 139 NVLASAGAD------MVVNVWDVERGKAVEVI-KC-HSD--QITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEeCC------CEEEEEECCCCeEEEEE-cC-CCC--ceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 355666643 35778888766432211 11 111 111122 2256777777754 358889988765
No 156
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.59 E-value=3.6e+02 Score=28.22 Aligned_cols=147 Identities=17% Similarity=0.203 Sum_probs=69.1
Q ss_pred CEEEEEcCCCCCCCCCCceeeeeEEEEECCC--ccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCC----CCcccCc
Q 009435 145 KRLFIFGGCGKSSNTNDEVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDG----HDYYLSD 218 (535)
Q Consensus 145 ~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t--~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~----~~~~~~~ 218 (535)
..|+.+||... .+.+.++|+.+ ..|+.-. .|..+.+.-.-++.-.+-++-|... ....+..
T Consensus 161 p~Iva~GGke~---------~n~lkiwdle~~~qiw~aKN----vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 161 PYIVATGGKEN---------INELKIWDLEQSKQIWSAKN----VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred CceEecCchhc---------ccceeeeecccceeeeeccC----CCCccccceeeeeeccceecCCCCCceEEEEeccee
Confidence 36888899421 35555666554 4566543 3333333333333222222222110 0123556
Q ss_pred eEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeee
Q 009435 219 VHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAG 298 (535)
Q Consensus 219 i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~ 298 (535)
+-.||+..++ +.+......-.+....+.+. +++.+++|-. ..++..||+..+.--...-.+-.-..|+-|+
T Consensus 228 vR~YDt~~qR-RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~------~g~l~~FD~r~~kl~g~~~kg~tGsirsih~- 298 (412)
T KOG3881|consen 228 VRLYDTRHQR-RPVAQFDFLENPISSTGLTP-SGNFIYTGNT------KGQLAKFDLRGGKLLGCGLKGITGSIRSIHC- 298 (412)
T ss_pred EEEecCcccC-cceeEeccccCcceeeeecC-CCcEEEEecc------cchhheecccCceeeccccCCccCCcceEEE-
Confidence 8889988543 33333222222222222222 3344444433 3458899998876433322222222343332
Q ss_pred eeecccCCCEEEEEcccCCC
Q 009435 299 DCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 299 ~~~~~~~~~~l~v~GG~~~~ 318 (535)
..+..++..+|.+..
T Consensus 299 -----hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 299 -----HPTHPVLASCGLDRY 313 (412)
T ss_pred -----cCCCceEEeecccee
Confidence 345567888887653
No 157
>PRK01029 tolB translocation protein TolB; Provisional
Probab=36.50 E-value=5.5e+02 Score=27.27 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=36.9
Q ss_pred CceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 217 ~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
.+++++|+.+.+.+.+... +. ........-+++.+++..... -...+|++|+.++....+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~---~~-~~~~p~wSpDG~~L~f~~~~~---g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS---PE-NKESPSWAIDSLHLVYSAGNS---NESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC---CC-CccceEECCCCCEEEEEECCC---CCceEEEEECCCCCEEEeec
Confidence 5799999999998877541 11 111112223444444433221 13579999999988887754
No 158
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=36.31 E-value=79 Score=20.99 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=16.1
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t 119 (535)
+.+..+++||+.+. -..++++|..|
T Consensus 16 ~~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T------TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC------CCEEEEEeCCC
Confidence 34666888888775 35789998764
No 159
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=34.88 E-value=5.4e+02 Score=26.72 Aligned_cols=117 Identities=14% Similarity=-0.014 Sum_probs=61.8
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEE-EECCEEEEEcCCC----CCCCCCcEEEEECCC
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCT-TVGENLYVFGGTD----GMNPLRDLHILDTSS 119 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~Iyv~GG~~----~~~~~~~~~~yd~~t 119 (535)
.+||.-..... ..+.++++|..+.+-.. ..+.....+... .-+..||+.-.+- -....+.+.+||+.|
T Consensus 14 ~v~V~d~~~~~--~~~~v~ViD~~~~~v~g-----~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 14 RVYVLDPGHFA--ATTQVYTIDGEAGRVLG-----MTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred EEEEECCcccc--cCceEEEEECCCCEEEE-----EEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 46665443211 23789999988865433 233332223332 2245699987631 122457899999999
Q ss_pred CeEEeccccCCCCCCCC-------CeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE
Q 009435 120 HTWISPSVRGEGPEARE-------GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (535)
Q Consensus 120 ~~W~~~~~~g~~p~~r~-------~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~ 180 (535)
.+-..--.. .+.||. .++....+..|||.-= ...+.+-+.|+.+.+--.
T Consensus 87 ~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~n~----------~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 87 HLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFYQF----------SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEecC----------CCCCEEEEEECCCCcEEE
Confidence 875432211 233331 1222222345777521 124567777877765443
No 160
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=34.73 E-value=5.3e+02 Score=28.17 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=45.2
Q ss_pred ccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCC
Q 009435 31 KRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNP 108 (535)
Q Consensus 31 ~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~ 108 (535)
.++.-+++++..++..+++||.+. .+++|.+....-... .....-|..-+++.+ ++..+..|- .
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dg------kvhvysl~g~~l~ee---~~~~~h~a~iT~vaySpd~~yla~~D-----a 507 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDG------KVHVYSLSGDELKEE---AKLLEHRAAITDVAYSPDGAYLAAGD-----A 507 (603)
T ss_pred cccccceEEEcCCCCEEEEecccc------eEEEEEecCCcccce---eeeecccCCceEEEECCCCcEEEEec-----c
Confidence 566667777776777889999653 378887766443221 122233555555555 344444443 2
Q ss_pred CCcEEEEECCCCe
Q 009435 109 LRDLHILDTSSHT 121 (535)
Q Consensus 109 ~~~~~~yd~~t~~ 121 (535)
...+..||..++.
T Consensus 508 ~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 508 SRKVVLYDVASRE 520 (603)
T ss_pred CCcEEEEEcccCc
Confidence 3567778776543
No 161
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=34.25 E-value=4.4e+02 Score=25.50 Aligned_cols=215 Identities=15% Similarity=0.189 Sum_probs=95.1
Q ss_pred CcccccceEEEEcCCCEEEEEC--CcCCC-CCCcceEEEEEcC-CCeEEEeec-cCC----CCCCCCceEEEEECCEEEE
Q 009435 29 PGKRWGHTCNAIKGGRFLYVFG--GYGKD-NCQTNQVHVFDTV-NQTWSQPVI-KGS----PPTPRDSHSCTTVGENLYV 99 (535)
Q Consensus 29 P~~R~gh~~~~v~~~~~Iyi~G--G~~~~-~~~~~~~~~yd~~-t~~W~~l~~-~g~----~P~~R~~hs~~~~~~~Iyv 99 (535)
+..+.+..++++..++.|+++- +.... .....-.+..... -.+|..+.. ... .+.+-.......-++++++
T Consensus 44 ~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~ 123 (275)
T PF13088_consen 44 PGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIA 123 (275)
T ss_dssp TTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEE
T ss_pred cCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEE
Confidence 3455566666654455677775 22111 1111112344444 458998642 111 1111222223444778777
Q ss_pred EcCCCC-CCCCCcEEEEECCC-CeEEeccccCCCCCCCCCeEEEE-E-CCEEEEEcCCCCCCCCCCceeeeeEEEEECC-
Q 009435 100 FGGTDG-MNPLRDLHILDTSS-HTWISPSVRGEGPEAREGHSAAL-V-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE- 174 (535)
Q Consensus 100 ~GG~~~-~~~~~~~~~yd~~t-~~W~~~~~~g~~p~~r~~hs~~~-~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~- 174 (535)
.. +.. .........+.... .+|+...... ........+.+ . ++.|+++--.. ... .-.+.+..+
T Consensus 124 ~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-----~~~---~~~~~~S~D~ 192 (275)
T PF13088_consen 124 PY-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-----GND---DIYISRSTDG 192 (275)
T ss_dssp EE-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-----SST---EEEEEEESST
T ss_pred EE-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-----CCC---cEEEEEECCC
Confidence 62 111 11223444455554 5698766321 12122233322 2 56888775421 001 223333333
Q ss_pred CccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceee-EEEEE-C
Q 009435 175 TFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH-STVAF-G 251 (535)
Q Consensus 175 t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~h-s~v~~-~ 251 (535)
-.+|+..... ..|.......++.+ ++.++++....... ..-.++.-.-...+|.........+....++ +++.. +
T Consensus 193 G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r-~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~d 270 (275)
T PF13088_consen 193 GRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGR-SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPD 270 (275)
T ss_dssp TSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTS-EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEET
T ss_pred CCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCC-CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCC
Confidence 4579986533 33444444444443 56777777622111 1122333333478898765411112223333 34444 4
Q ss_pred CEEEE
Q 009435 252 KNLFV 256 (535)
Q Consensus 252 ~~iyv 256 (535)
++|+|
T Consensus 271 g~l~i 275 (275)
T PF13088_consen 271 GKLYI 275 (275)
T ss_dssp TEEEE
T ss_pred CcCCC
Confidence 58876
No 162
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=32.92 E-value=9.6e+02 Score=29.02 Aligned_cols=211 Identities=14% Similarity=0.076 Sum_probs=105.9
Q ss_pred CCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCC-------CCCCC--CceEEEEE--CCEEEEEcCCCCCCCCC
Q 009435 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGS-------PPTPR--DSHSCTTV--GENLYVFGGTDGMNPLR 110 (535)
Q Consensus 42 ~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~-------~P~~R--~~hs~~~~--~~~Iyv~GG~~~~~~~~ 110 (535)
.++.|||.-- ..+.+.++|.....-..+...+. ....+ .-++.+.. ++.|||.-.. .+
T Consensus 578 ~~g~lyVaDs------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-----n~ 646 (1057)
T PLN02919 578 LNNRLFISDS------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-----NH 646 (1057)
T ss_pred CCCeEEEEEC------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-----Cc
Confidence 3556888522 23578899986553323221111 01111 12444443 4568887532 24
Q ss_pred cEEEEECCCCeEEeccccCCCC----------C--CCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc
Q 009435 111 DLHILDTSSHTWISPSVRGEGP----------E--AREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (535)
Q Consensus 111 ~~~~yd~~t~~W~~~~~~g~~p----------~--~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~ 176 (535)
.+.++|+.++.-+.+...|... . -..-+.++.. ++.+||.... .+.+++||+.+.
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------~~~I~v~d~~~g 715 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------QHQIWEYNISDG 715 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------CCeEEEEECCCC
Confidence 6888898877654443221100 0 0111233333 4678887541 356888888777
Q ss_pred cEEEeccCCCC-------CC---CCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCC-CCCC---
Q 009435 177 VWKRATTSGNP-------PS---ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG-MVLS--- 240 (535)
Q Consensus 177 ~W~~~~~~~~~-------p~---~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g-~~p~--- 240 (535)
....+...+.. +. -..-..+++. ++.|||.... .+.|.+||+.++..+.+.... ..+.
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccc
Confidence 65544322110 00 0111223332 3568887553 356999999876644322100 0000
Q ss_pred -----------Ccee--eEE-EEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeC
Q 009435 241 -----------PRAG--HST-VAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 241 -----------~R~~--hs~-v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
.... ..+ +.-++.+||....+ +.|.+||+.++....+...
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------HKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------CEEEEEECCCCeEEEEecc
Confidence 0011 122 23346788876542 4599999998887776543
No 163
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=32.57 E-value=6.4e+02 Score=26.92 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=44.3
Q ss_pred CCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 50 GGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 50 GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
|-|.....+.+++|++|-.-+.=-++. |-.|..|.+ ++-.+++.+|++- -...+-+++.|+.+-
T Consensus 396 ~dW~~~de~~N~vYilDe~lnvvGklt--Gl~~gERIY-AvRf~gdv~yiVT----frqtDPlfviDlsNP 459 (603)
T COG4880 396 SDWTSEDEPVNAVYILDENLNVVGKLT--GLAPGERIY-AVRFVGDVLYIVT----FRQTDPLFVIDLSNP 459 (603)
T ss_pred cccccCCCccceeEEEcCCCcEEEEEe--ccCCCceEE-EEEEeCceEEEEE----EeccCceEEEEcCCC
Confidence 445445567899999998777666653 455555654 5567789999885 334577899998753
No 164
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=31.21 E-value=5.7e+02 Score=25.90 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (535)
..+-.||..++.-.. ..-..-.--.|+..+..-.++||.++ .+-+||+.+..=..+... ..+-. +
T Consensus 35 gslrlYdv~~~~l~~-----~~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth---~~~i~--c 99 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKL-----KFKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTH---DEGIR--C 99 (323)
T ss_pred CcEEEEeccchhhhh-----heecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceeeccC---CCceE--E
Confidence 357788888774332 11111222356666766667787653 588999988765444321 11111 1
Q ss_pred EEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCc
Q 009435 140 AAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD 218 (535)
Q Consensus 140 ~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~ 218 (535)
+.. .....+|.||++ ..+-.+|+... ... +....+..-+++.+.++.|+| |+.+ ..
T Consensus 100 i~~~~~~~~vIsgsWD-----------~~ik~wD~R~~---~~~--~~~d~~kkVy~~~v~g~~LvV-g~~~------r~ 156 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWD-----------KTIKFWDPRNK---VVV--GTFDQGKKVYCMDVSGNRLVV-GTSD------RK 156 (323)
T ss_pred EEeeccCCeEEEcccC-----------ccEEEEecccc---ccc--cccccCceEEEEeccCCEEEE-eecC------ce
Confidence 111 235678889975 34556666641 111 111222244555555555554 4432 34
Q ss_pred eEEEECCCC
Q 009435 219 VHILDTDTL 227 (535)
Q Consensus 219 i~~yd~~t~ 227 (535)
+..||+.+.
T Consensus 157 v~iyDLRn~ 165 (323)
T KOG1036|consen 157 VLIYDLRNL 165 (323)
T ss_pred EEEEEcccc
Confidence 888888654
No 165
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.92 E-value=5.3e+02 Score=25.43 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=26.1
Q ss_pred ECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecC-CCcEEEEee
Q 009435 223 DTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD-SGLWTKVIT 285 (535)
Q Consensus 223 d~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~-~~~W~~l~~ 285 (535)
+.+...|+.---.. .|.+. .+..-.+-+.++.++|-+ |.+.++-.. .++|.++..
T Consensus 241 ~~e~e~wk~tll~~-f~~~~-w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEE-FPDVV-WRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCccCccccccccc-CCcce-EEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEccc
Confidence 44556676533211 23333 333334444444444432 235555444 448988754
No 166
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.27 E-value=5.4e+02 Score=25.27 Aligned_cols=91 Identities=14% Similarity=0.268 Sum_probs=58.7
Q ss_pred eeEEEEECCCccEEEeccCCCCCCCCCcee----EEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCC
Q 009435 166 NDLYILNTETFVWKRATTSGNPPSARDSHT----CSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 239 (535)
Q Consensus 166 n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s----~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p 239 (535)
..++.+|..+++-.+- -.+|. ++.+ +..+++-|+++. .+-.||..+...+.+.. +-
T Consensus 81 k~v~vwDV~TGkv~Rr---------~rgH~aqVNtV~fNeesSVv~SgsfD~------s~r~wDCRS~s~ePiQi---ld 142 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR---------FRGHLAQVNTVRFNEESSVVASGSFDS------SVRLWDCRSRSFEPIQI---LD 142 (307)
T ss_pred ceEEEEEcccCeeeee---------cccccceeeEEEecCcceEEEeccccc------eeEEEEcccCCCCccch---hh
Confidence 4577888887653221 11222 2233 345777777653 47889999888888776 55
Q ss_pred CCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcE
Q 009435 240 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (535)
Q Consensus 240 ~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (535)
..+-+-+.+.+.+..+|.|-... .+-.||+..++-
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DG------tvRtydiR~G~l 177 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDG------TVRTYDIRKGTL 177 (307)
T ss_pred hhcCceeEEEecccEEEeeccCC------cEEEEEeeccee
Confidence 56667777778887777665543 378899887763
No 167
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=29.47 E-value=64 Score=22.96 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=18.7
Q ss_pred CCceeEEEeEcCceeeeeeeecC
Q 009435 408 PLGYTIETTIDGKPLRGILFANK 430 (535)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~ 430 (535)
-+.|--...|.|-+|+|+|.-.-
T Consensus 27 e~aYQt~V~IgGHvFkGiLyDqG 49 (50)
T TIGR01624 27 EYAYQATVTIGGHVFKGFLHDQG 49 (50)
T ss_pred eEEEEEEEEECceEEeeEEeccC
Confidence 46777788899999999997543
No 168
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=28.70 E-value=5.9e+02 Score=26.48 Aligned_cols=197 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
.|..++.|..+.. +-++|+++++-..--+ -......-.++.-..-.++..|.... |-+||++.++
T Consensus 162 ~n~wf~tgs~Drt------ikIwDlatg~Lkltlt---Ghi~~vr~vavS~rHpYlFs~gedk~------VKCwDLe~nk 226 (460)
T KOG0285|consen 162 GNEWFATGSADRT------IKIWDLATGQLKLTLT---GHIETVRGVAVSKRHPYLFSAGEDKQ------VKCWDLEYNK 226 (460)
T ss_pred CceeEEecCCCce------eEEEEcccCeEEEeec---chhheeeeeeecccCceEEEecCCCe------eEEEechhhh
Q ss_pred EEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccccccc-cchhhhhhhhhhhhccccCC
Q 009435 280 WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKL-EKLSLRKQLKLKCQEQNFTP 358 (535)
Q Consensus 280 W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~-~~l~~~k~l~~~~~~~~~~~ 358 (535)
..+ --..-.++.-|+.....-.+++.||.+.. -.+|.+.+...--.-. .+............++-.+-
T Consensus 227 vIR-------~YhGHlS~V~~L~lhPTldvl~t~grDst----~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 227 VIR-------HYHGHLSGVYCLDLHPTLDVLVTGGRDST----IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred hHH-------HhccccceeEEEeccccceeEEecCCcce----EEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Q ss_pred ccCcceEEecccCCCCCCCCccccCCCCCCCcCCC------------------cccceeeeEeeeecCCceeEEEeEcCc
Q 009435 359 VHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLN------------------EGKKTFQAKVTESFPLGYTIETTIDGK 420 (535)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~------------------~g~k~f~~r~~~~~~~~~~~~~~~~~~ 420 (535)
+.|.+++-|+....+.-. .+........-.-+| +-++.|-+.++.----+-||+..=||-
T Consensus 296 S~D~tvrlWDl~agkt~~--tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMI--TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred cCCceEEEeeeccCceeE--eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCce
Q ss_pred eeee
Q 009435 421 PLRG 424 (535)
Q Consensus 421 ~~~~ 424 (535)
+|.|
T Consensus 374 ~~~G 377 (460)
T KOG0285|consen 374 LVSG 377 (460)
T ss_pred EEEc
No 169
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.13 E-value=7.2e+02 Score=25.41 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=19.9
Q ss_pred CCCcCCCcccceeeeEeeeecCC-----ceeEEEeEcCce
Q 009435 387 RNNFPLNEGKKTFQAKVTESFPL-----GYTIETTIDGKP 421 (535)
Q Consensus 387 ~~~~~~~~g~k~f~~r~~~~~~~-----~~~~~~~~~~~~ 421 (535)
..+|.+| ++||-++++| -|-+.|+=||+.
T Consensus 242 ~~~~~AH------~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 242 LTEFLAH------ENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred ceeeecc------hhheeeeEEEecCCceEEEEeccCceE
Confidence 3466655 5788887744 377788888864
No 170
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=26.09 E-value=5.6e+02 Score=26.49 Aligned_cols=185 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred EEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-----CCEEEEEcCCCCCCCCCCcee
Q 009435 90 CTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-----GKRLFIFGGCGKSSNTNDEVY 164 (535)
Q Consensus 90 ~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-----~~~lyv~GG~~~~~~~~~~~~ 164 (535)
|.-+++++.|.|..+ ..+-++|..|+ .+.....+|+-++. ++.+.-..-
T Consensus 242 CLqyd~rviisGSSD-----sTvrvWDv~tg---------e~l~tlihHceaVLhlrf~ng~mvtcSk------------ 295 (499)
T KOG0281|consen 242 CLQYDERVIVSGSSD-----STVRVWDVNTG---------EPLNTLIHHCEAVLHLRFSNGYMVTCSK------------ 295 (499)
T ss_pred eeeccceEEEecCCC-----ceEEEEeccCC---------chhhHHhhhcceeEEEEEeCCEEEEecC------------
Q ss_pred eeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCcee
Q 009435 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 244 (535)
Q Consensus 165 ~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~ 244 (535)
...+-++|..+-+ .++..--+---|..--.+-++++++|-...+.. +-++++.|...... +...+.|
T Consensus 296 DrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRT------ikvW~~st~efvRt-----l~gHkRG 362 (499)
T KOG0281|consen 296 DRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT------IKVWSTSTCEFVRT-----LNGHKRG 362 (499)
T ss_pred CceeEEEeccCch--HHHHHHHHhhhhhheeeeccccceEEEecCCce------EEEEeccceeeehh-----hhccccc
Q ss_pred eEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCc
Q 009435 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 324 (535)
Q Consensus 245 hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~d 324 (535)
-++..+.++++|-|-.+.. +-.||++.+.--++ -.+....-|+--. +++=+|.||++.. -.
T Consensus 363 IAClQYr~rlvVSGSSDnt------IRlwdi~~G~cLRv-LeGHEeLvRciRF--------d~krIVSGaYDGk----ik 423 (499)
T KOG0281|consen 363 IACLQYRDRLVVSGSSDNT------IRLWDIECGACLRV-LEGHEELVRCIRF--------DNKRIVSGAYDGK----IK 423 (499)
T ss_pred ceehhccCeEEEecCCCce------EEEEeccccHHHHH-HhchHHhhhheee--------cCceeeeccccce----EE
Q ss_pred EEEEeccc
Q 009435 325 MYYLYTGL 332 (535)
Q Consensus 325 v~~l~~~~ 332 (535)
+|.|.+..
T Consensus 424 vWdl~aal 431 (499)
T KOG0281|consen 424 VWDLQAAL 431 (499)
T ss_pred EEeccccc
No 171
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=25.99 E-value=7.6e+02 Score=25.66 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=89.6
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE--ECCEEEEEcCCCCCCCCCcEEEEECC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
..++++|+..+. .+.+.++|..+++-......|. .-+..+. .++++||.-... ..+.+.++|..
T Consensus 83 ~~~~~vyv~~~~------~~~v~vid~~~~~~~~~~~vG~-----~P~~~~~~~~~~~vYV~n~~~---~~~~vsvid~~ 148 (381)
T COG3391 83 PAGNKVYVTTGD------SNTVSVIDTATNTVLGSIPVGL-----GPVGLAVDPDGKYVYVANAGN---GNNTVSVIDAA 148 (381)
T ss_pred CCCCeEEEecCC------CCeEEEEcCcccceeeEeeecc-----CCceEEECCCCCEEEEEeccc---CCceEEEEeCC
Confidence 446679998764 4678899977765544222232 3333333 366899986432 35789999999
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~ 198 (535)
+++=......|..| .+.+....+.++|+.-. ..+.+..+|..+..-..-......+....-+...+
T Consensus 149 t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~~-----------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 149 TNKVTATIPVGNTP---TGVAVDPDGNKVYVTNS-----------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred CCeEEEEEecCCCc---ceEEECCCCCeEEEEec-----------CCCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 98765544344433 33333334567998752 24668888877664332111111122222122222
Q ss_pred --eCCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 009435 199 --WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (535)
Q Consensus 199 --~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v 232 (535)
-+.++|+.-..+. .+.+..+|..++.-...
T Consensus 215 ~~~g~~~yV~~~~~~----~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 215 DPDGNRVYVANDGSG----SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCCCEEEEEeccCC----CceEEEEeCCCceEEEe
Confidence 2567888765442 24578888887654443
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=25.40 E-value=1e+03 Score=26.97 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=34.4
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCC
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD 104 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~ 104 (535)
|-.+.-++|..+++..| +.+++||+..+.--+.- +|.. ---+..+-..+++.|..||.+
T Consensus 16 ~d~afkPDGsqL~lAAg--------~rlliyD~ndG~llqtL-KgHK--DtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAG--------SRLLVYDTSDGTLLQPL-KGHK--DTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred heeEECCCCceEEEecC--------CEEEEEeCCCccccccc-cccc--ceEEEEEEccCCceeccCCCc
Confidence 44455567777877766 57999999876544311 1111 011222223378899888865
No 173
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=24.70 E-value=20 Score=25.20 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=11.4
Q ss_pred eEeeeecCCceeEE
Q 009435 401 AKVTESFPLGYTIE 414 (535)
Q Consensus 401 ~r~~~~~~~~~~~~ 414 (535)
|-+||-||||++-+
T Consensus 18 aDisDyFNYGf~E~ 31 (45)
T PF05182_consen 18 ADISDYFNYGFNEE 31 (45)
T ss_pred CChhhhcCCCCCHH
Confidence 56899999999754
No 174
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=24.05 E-value=9e+02 Score=25.83 Aligned_cols=182 Identities=16% Similarity=0.119 Sum_probs=84.1
Q ss_pred ceEEEEEcCCC-eEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCC
Q 009435 60 NQVHVFDTVNQ-TWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (535)
Q Consensus 60 ~~~~~yd~~t~-~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (535)
..+.++|...+ .-.+. .. .++... ++++.. .+++++.|+.+ ..+.++|+.+.+-.+. +..-...
T Consensus 225 ~tiriwd~~~~~~~~~~-l~-gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~~~-----l~~hs~~ 290 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKT-LK-GHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECVRK-----LKGHSDG 290 (456)
T ss_pred ceEEEeeccCCCeEEEE-ec-CCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEEEe-----eeccCCc
Confidence 35778888443 32221 12 233333 444433 44788888875 4588888888554321 1111122
Q ss_pred eEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcc
Q 009435 138 HSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYY 215 (535)
Q Consensus 138 hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~ 215 (535)
-+.+.. ++.+++.+.+ ...+.+||+.+..-..+........+.....+....+-.|++-+..+
T Consensus 291 is~~~f~~d~~~l~s~s~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d---- 355 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASY-----------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD---- 355 (456)
T ss_pred eEEEEECCCCCEEEEcCC-----------CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC----
Confidence 222222 4667777663 35577889887764311111011111111222222344444433322
Q ss_pred cCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 216 ~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
+.+-.||+....-..... +.....+..+..+.. +++.++.|+.. ..|+++|+.+.
T Consensus 356 -~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d------~~v~~~~~~s~ 411 (456)
T KOG0266|consen 356 -RTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSED------GSVYVWDSSSG 411 (456)
T ss_pred -CeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCC------ceEEEEeCCcc
Confidence 235556665432211111 001112444444444 44555555542 34899998863
No 175
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=22.16 E-value=6.5e+02 Score=27.86 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=32.3
Q ss_pred eEEEEECCCccEEEeccCCCCCCCC---Ccee-EEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeec
Q 009435 167 DLYILNTETFVWKRATTSGNPPSAR---DSHT-CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 167 ~v~~yd~~t~~W~~~~~~~~~p~~r---~~~s-~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
.|....|....|+.+.+..++-.-- .+-. ++..++.+++==| +-+.|+....|..+.+
T Consensus 209 Gvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~G----------VsRqNp~GdsWkdI~t 270 (705)
T KOG3669|consen 209 GVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREG----------VSRQNPEGDSWKDIVT 270 (705)
T ss_pred cccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEec----------ccccCCCCchhhhccC
Confidence 3445567788899886443221101 1111 2223666665544 4456789999997764
No 176
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=22.00 E-value=1e+03 Score=25.77 Aligned_cols=70 Identities=23% Similarity=0.188 Sum_probs=44.8
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
++.-.|+|-.+++ .+.+||..+..-..+. .+..+.....+.-+++.++++-. .-++|++|++++.
T Consensus 370 ~~e~~vigt~dgD-----~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~vvaNd------r~el~vididngn 434 (668)
T COG4946 370 DPEGDVIGTNDGD-----KLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVVVAND------RFELWVIDIDNGN 434 (668)
T ss_pred CCcceEEeccCCc-----eEEEEecCCceEEEee----CCccceEEEEEcCCCcEEEEEcC------ceEEEEEEecCCC
Confidence 3445666655443 4888999988877665 34555555555556665555542 2358999999887
Q ss_pred EEEEe
Q 009435 280 WTKVI 284 (535)
Q Consensus 280 W~~l~ 284 (535)
-+.+.
T Consensus 435 v~~id 439 (668)
T COG4946 435 VRLID 439 (668)
T ss_pred eeEec
Confidence 76654
Done!