Query 009435
Match_columns 535
No_of_seqs 348 out of 2585
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 3.7E-43 1.3E-47 355.3 32.4 283 26-340 9-295 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 3.2E-41 1.1E-45 339.5 38.0 284 43-368 15-299 (302)
3 2vpj_A Kelch-like protein 12; 100.0 5.8E-41 2E-45 337.3 33.7 270 43-340 14-286 (301)
4 3ii7_A Kelch-like protein 7; p 100.0 5.9E-41 2E-45 338.2 33.8 281 44-369 12-295 (306)
5 2uvk_A YJHT; unknown function, 100.0 6.1E-41 2.1E-45 345.5 30.9 291 27-340 5-350 (357)
6 2xn4_A Kelch-like protein 2; s 100.0 1.2E-39 4.2E-44 327.9 33.6 253 26-301 46-298 (302)
7 1zgk_A Kelch-like ECH-associat 100.0 1E-39 3.6E-44 330.0 32.7 250 26-300 55-307 (308)
8 3ii7_A Kelch-like protein 7; p 100.0 1.7E-39 5.7E-44 327.6 33.9 252 27-301 41-293 (306)
9 4asc_A Kelch repeat and BTB do 100.0 3.4E-40 1.1E-44 334.5 24.4 260 26-314 30-305 (315)
10 2vpj_A Kelch-like protein 12; 100.0 8.1E-39 2.8E-43 321.6 33.4 249 27-301 48-299 (301)
11 4asc_A Kelch repeat and BTB do 100.0 2.5E-39 8.5E-44 328.1 28.9 265 44-338 5-283 (315)
12 2woz_A Kelch repeat and BTB do 100.0 8.9E-39 3E-43 324.4 32.5 274 29-338 6-293 (318)
13 2woz_A Kelch repeat and BTB do 100.0 1E-39 3.4E-44 331.4 24.1 259 26-313 41-314 (318)
14 2zwa_A Leucine carboxyl methyl 100.0 2E-37 7E-42 347.0 29.2 283 27-331 384-693 (695)
15 2uvk_A YJHT; unknown function, 100.0 3.4E-35 1.2E-39 302.5 27.2 248 21-286 45-351 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 4.8E-31 1.6E-35 295.4 27.0 240 79-337 383-640 (695)
17 1k3i_A Galactose oxidase precu 100.0 2E-30 7E-35 288.9 24.0 268 28-316 182-531 (656)
18 1k3i_A Galactose oxidase precu 99.9 6.9E-26 2.4E-30 252.3 21.6 253 62-339 168-504 (656)
19 3mbr_X Glutamine cyclotransfer 98.0 0.0023 7.8E-08 61.3 23.5 204 85-330 21-233 (243)
20 3dsm_A Uncharacterized protein 97.8 0.0059 2E-07 60.9 25.4 249 31-331 43-301 (328)
21 3mbr_X Glutamine cyclotransfer 97.8 0.0063 2.1E-07 58.3 23.1 182 43-260 30-224 (243)
22 3dsm_A Uncharacterized protein 97.7 0.019 6.4E-07 57.1 26.9 231 59-334 16-255 (328)
23 3nol_A Glutamine cyclotransfer 97.6 0.0079 2.7E-07 58.2 20.9 199 88-329 46-253 (262)
24 3nol_A Glutamine cyclotransfer 97.4 0.018 6.2E-07 55.6 21.1 187 36-260 46-245 (262)
25 3vgz_A Uncharacterized protein 97.4 0.11 3.8E-06 50.8 27.4 246 35-332 44-303 (353)
26 2iwa_A Glutamine cyclotransfer 97.4 0.066 2.2E-06 51.9 24.5 201 35-278 24-238 (266)
27 3nok_A Glutaminyl cyclase; bet 97.3 0.014 4.9E-07 56.4 18.5 158 88-283 58-216 (268)
28 2iwa_A Glutamine cyclotransfer 97.2 0.096 3.3E-06 50.8 23.8 204 88-333 24-238 (266)
29 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.1 3.4E-06 53.6 25.0 212 60-318 219-430 (445)
30 3q7m_A Lipoprotein YFGL, BAMB; 97.2 0.11 3.7E-06 52.2 24.5 193 43-282 53-265 (376)
31 1l0q_A Surface layer protein; 97.2 0.034 1.2E-06 55.8 20.8 196 36-282 36-238 (391)
32 3nok_A Glutaminyl cyclase; bet 97.1 0.022 7.6E-07 55.1 17.9 150 43-231 64-215 (268)
33 3vgz_A Uncharacterized protein 97.1 0.22 7.5E-06 48.7 29.0 207 34-285 91-311 (353)
34 3jrp_A Fusion protein of prote 97.0 0.044 1.5E-06 54.1 19.6 198 37-279 16-242 (379)
35 1l0q_A Surface layer protein; 97.0 0.069 2.4E-06 53.4 21.2 187 44-284 2-196 (391)
36 3q7m_A Lipoprotein YFGL, BAMB; 97.0 0.35 1.2E-05 48.3 27.1 171 60-279 153-339 (376)
37 3v9f_A Two-component system se 97.0 0.05 1.7E-06 60.8 21.5 214 61-316 428-647 (781)
38 1gxr_A ESG1, transducin-like e 96.8 0.32 1.1E-05 46.9 23.3 222 37-317 102-328 (337)
39 4a2l_A BT_4663, two-component 96.7 0.079 2.7E-06 59.4 20.9 212 61-315 428-649 (795)
40 4ery_A WD repeat-containing pr 96.7 0.46 1.6E-05 45.8 24.6 229 37-318 28-260 (312)
41 1k8k_C P40, ARP2/3 complex 41 96.6 0.2 6.8E-06 49.3 20.6 156 37-225 13-172 (372)
42 3bws_A Protein LP49; two-domai 96.6 0.13 4.5E-06 52.2 19.6 189 61-283 102-298 (433)
43 1kb0_A Quinohemoprotein alcoho 96.5 0.47 1.6E-05 52.2 24.8 118 43-182 77-208 (677)
44 4aez_A CDC20, WD repeat-contai 96.5 0.36 1.2E-05 48.7 22.2 210 61-317 157-371 (401)
45 1gxr_A ESG1, transducin-like e 96.5 0.31 1.1E-05 46.9 20.8 226 37-317 56-287 (337)
46 3bws_A Protein LP49; two-domai 96.4 0.22 7.6E-06 50.4 20.1 203 38-282 128-339 (433)
47 1p22_A F-BOX/WD-repeat protein 96.4 0.26 8.9E-06 50.4 20.4 184 45-280 144-328 (435)
48 3ow8_A WD repeat-containing pr 96.3 0.91 3.1E-05 44.4 23.8 225 38-318 86-313 (321)
49 1kb0_A Quinohemoprotein alcoho 96.3 0.74 2.5E-05 50.6 24.5 126 89-233 72-208 (677)
50 2ad6_A Methanol dehydrogenase 96.2 0.85 2.9E-05 49.0 24.1 120 43-182 62-194 (571)
51 2ovr_B FBW7, F-BOX/WD repeat p 96.2 0.91 3.1E-05 46.3 23.2 184 43-281 129-312 (445)
52 2hqs_A Protein TOLB; TOLB, PAL 96.1 0.19 6.3E-06 51.6 17.7 203 41-284 188-394 (415)
53 2hqs_A Protein TOLB; TOLB, PAL 96.1 0.66 2.3E-05 47.4 21.7 222 60-331 159-386 (415)
54 1jmx_B Amine dehydrogenase; ox 96.1 0.36 1.2E-05 46.9 18.8 166 41-231 8-180 (349)
55 1r5m_A SIR4-interacting protei 96.0 1.3 4.6E-05 43.8 23.9 227 36-317 112-352 (425)
56 3hfq_A Uncharacterized protein 96.0 0.46 1.6E-05 46.6 19.3 209 48-285 6-228 (347)
57 1q7f_A NHL, brain tumor CG1071 96.0 1.1 3.9E-05 42.3 27.3 230 36-313 33-268 (286)
58 3jro_A Fusion protein of prote 95.9 0.1 3.6E-06 58.1 15.8 191 44-278 21-239 (753)
59 3scy_A Hypothetical bacterial 95.9 1.4 4.9E-05 43.2 23.3 79 45-126 14-93 (361)
60 4ery_A WD repeat-containing pr 95.9 1.3 4.4E-05 42.5 23.6 196 38-280 71-271 (312)
61 1k8k_C P40, ARP2/3 complex 41 95.9 1.2 3.9E-05 43.6 21.8 70 200-285 213-284 (372)
62 3v9f_A Two-component system se 95.8 0.35 1.2E-05 54.0 19.6 182 60-277 469-656 (781)
63 1yiq_A Quinohemoprotein alcoho 95.7 2.7 9.2E-05 46.2 25.8 125 89-232 65-200 (689)
64 1ri6_A Putative isomerase YBHE 95.7 1.4 4.9E-05 42.3 21.3 208 37-285 43-272 (343)
65 2ojh_A Uncharacterized protein 95.6 0.98 3.3E-05 42.1 19.2 194 60-285 62-266 (297)
66 3zwl_B Eukaryotic translation 95.6 1.8 6.2E-05 41.9 22.6 203 38-284 38-256 (369)
67 1got_B GT-beta; complex (GTP-b 95.5 2 6.7E-05 42.1 21.9 178 94-318 154-335 (340)
68 1rwi_B Serine/threonine-protei 95.5 1.6 5.5E-05 40.7 22.2 192 37-279 28-224 (270)
69 1got_B GT-beta; complex (GTP-b 95.5 2.1 7.3E-05 41.9 26.8 224 38-317 61-292 (340)
70 3no2_A Uncharacterized protein 95.4 2 6.9E-05 41.2 21.3 213 45-313 6-230 (276)
71 4a2l_A BT_4663, two-component 95.4 2.9 9.9E-05 46.5 24.9 186 61-285 108-299 (795)
72 3ow8_A WD repeat-containing pr 95.4 2.3 7.7E-05 41.5 23.3 179 94-318 91-271 (321)
73 3zwl_B Eukaryotic translation 95.3 0.73 2.5E-05 44.8 17.8 237 37-317 79-337 (369)
74 1yiq_A Quinohemoprotein alcoho 95.3 4.3 0.00015 44.5 26.8 118 43-182 70-201 (689)
75 3mkq_A Coatomer beta'-subunit; 95.3 1.1 3.7E-05 49.5 20.9 226 36-317 17-250 (814)
76 1p22_A F-BOX/WD-repeat protein 95.3 1.3 4.4E-05 45.0 20.1 182 46-278 185-366 (435)
77 1r5m_A SIR4-interacting protei 95.3 1.5 5.2E-05 43.4 20.3 145 94-279 216-363 (425)
78 4aow_A Guanine nucleotide-bind 95.3 0.89 3E-05 43.8 18.0 238 38-331 92-338 (340)
79 3u4y_A Uncharacterized protein 95.2 1.9 6.3E-05 41.6 20.3 201 37-285 45-260 (331)
80 1kv9_A Type II quinohemoprotei 95.2 3.4 0.00012 45.1 24.4 125 89-233 61-196 (668)
81 1kv9_A Type II quinohemoprotei 95.2 4.6 0.00016 44.1 26.8 117 43-182 66-196 (668)
82 1w6s_A Methanol dehydrogenase 95.2 2.6 8.9E-05 45.5 22.8 121 43-182 62-200 (599)
83 1nir_A Nitrite reductase; hemo 95.1 1 3.5E-05 48.0 19.5 255 34-334 181-460 (543)
84 1pby_B Quinohemoprotein amine 95.1 1.7 5.9E-05 41.6 19.7 119 35-180 37-168 (337)
85 4gga_A P55CDC, cell division c 95.1 1.8 6.1E-05 43.8 20.4 84 218-318 302-387 (420)
86 2ad6_A Methanol dehydrogenase 95.0 2.8 9.5E-05 45.0 22.4 126 89-233 57-194 (571)
87 3g4e_A Regucalcin; six bladed 95.0 1.7 5.9E-05 41.7 19.0 239 33-314 14-261 (297)
88 3u4y_A Uncharacterized protein 94.9 2.8 9.5E-05 40.3 22.0 193 41-280 7-210 (331)
89 3jrp_A Fusion protein of prote 94.9 0.88 3E-05 44.5 17.1 199 45-286 70-297 (379)
90 3fm0_A Protein CIAO1; WDR39,SG 94.9 1.8 6.1E-05 42.6 19.3 194 38-275 22-223 (345)
91 1ri6_A Putative isomerase YBHE 94.8 1.4 4.8E-05 42.3 18.0 210 38-286 90-319 (343)
92 3hfq_A Uncharacterized protein 94.7 1.8 6.2E-05 42.2 18.7 215 38-285 45-280 (347)
93 4g56_B MGC81050 protein; prote 94.7 0.43 1.5E-05 47.6 14.2 207 36-279 46-260 (357)
94 2xdw_A Prolyl endopeptidase; a 94.6 6.3 0.00022 43.0 27.0 198 60-283 151-375 (710)
95 1vyh_C Platelet-activating fac 94.6 3 0.0001 42.2 20.6 152 37-230 113-269 (410)
96 1qks_A Cytochrome CD1 nitrite 94.6 4.6 0.00016 43.3 22.7 255 33-333 198-478 (567)
97 3fm0_A Protein CIAO1; WDR39,SG 94.5 0.66 2.2E-05 45.8 14.8 186 94-318 27-217 (345)
98 2dg1_A DRP35, lactonase; beta 94.4 2.5 8.4E-05 40.9 18.7 212 37-283 49-269 (333)
99 3c5m_A Oligogalacturonate lyas 94.3 3.3 0.00011 40.8 19.8 156 109-286 167-338 (396)
100 2vdu_B TRNA (guanine-N(7)-)-me 94.3 3.6 0.00012 41.9 20.5 161 37-231 107-276 (450)
101 2ecf_A Dipeptidyl peptidase IV 94.2 2.6 8.9E-05 46.0 20.5 224 35-285 40-329 (741)
102 2ojh_A Uncharacterized protein 94.1 3 0.0001 38.6 18.2 188 59-284 21-213 (297)
103 1w6s_A Methanol dehydrogenase 94.0 5.2 0.00018 43.2 21.8 126 89-233 57-200 (599)
104 3dwl_C Actin-related protein 2 94.0 0.17 5.7E-06 50.3 9.3 149 44-227 23-178 (377)
105 3e5z_A Putative gluconolactona 94.0 4.3 0.00015 38.5 23.3 249 33-334 29-288 (296)
106 1vyh_C Platelet-activating fac 93.9 4.7 0.00016 40.6 20.3 63 201-279 308-371 (410)
107 2qc5_A Streptogramin B lactona 93.8 4.4 0.00015 37.9 24.9 197 37-284 24-224 (300)
108 2z3z_A Dipeptidyl aminopeptida 93.7 9.1 0.00031 41.3 23.4 194 59-279 234-437 (706)
109 1sq9_A Antiviral protein SKI8; 93.6 1.4 4.7E-05 43.7 15.4 107 166-281 207-326 (397)
110 4gqb_B Methylosome protein 50; 93.5 5.1 0.00017 39.5 19.2 224 36-318 86-323 (344)
111 3c5m_A Oligogalacturonate lyas 93.4 6.3 0.00022 38.6 22.8 114 165-286 167-282 (396)
112 3pe7_A Oligogalacturonate lyas 93.4 6.3 0.00022 38.7 22.2 224 39-286 43-282 (388)
113 2bkl_A Prolyl endopeptidase; m 93.4 5.3 0.00018 43.5 20.9 195 60-281 147-355 (695)
114 3iz6_a 40S ribosomal protein R 93.3 6.9 0.00024 38.8 21.7 231 38-317 72-320 (380)
115 3vl1_A 26S proteasome regulato 93.3 3.9 0.00013 40.7 18.4 146 41-230 66-216 (420)
116 2z2n_A Virginiamycin B lyase; 93.3 5.3 0.00018 37.4 26.3 196 37-283 19-218 (299)
117 3mkq_A Coatomer beta'-subunit; 93.3 2.3 7.7E-05 46.9 17.9 191 41-281 65-263 (814)
118 3ott_A Two-component system se 93.3 11 0.00039 41.3 23.6 191 41-284 71-267 (758)
119 3v7d_B Cell division control p 93.1 8.1 0.00028 39.1 24.2 196 37-280 167-384 (464)
120 2xbg_A YCF48-like protein; pho 93.1 7 0.00024 38.3 22.1 226 35-314 38-268 (327)
121 3v7d_B Cell division control p 93.1 8.4 0.00029 39.0 21.7 170 46-260 282-452 (464)
122 2pm9_A Protein WEB1, protein t 93.0 5.7 0.0002 39.2 19.0 233 37-317 72-328 (416)
123 1qhu_A Protein (hemopexin); be 92.9 2.4 8.1E-05 44.2 16.1 183 43-277 158-385 (460)
124 4a11_B DNA excision repair pro 92.9 6.2 0.00021 38.6 18.9 156 35-227 46-219 (408)
125 3i2n_A WD repeat-containing pr 92.9 0.76 2.6E-05 44.6 11.9 193 41-278 28-244 (357)
126 3ei3_B DNA damage-binding prot 92.9 4.5 0.00015 39.8 17.9 194 37-279 78-284 (383)
127 3vl1_A 26S proteasome regulato 92.8 8.3 0.00028 38.2 23.6 219 43-317 108-356 (420)
128 1yfq_A Cell cycle arrest prote 92.8 5.9 0.0002 37.9 18.2 186 41-277 21-225 (342)
129 4aez_A CDC20, WD repeat-contai 92.7 8.7 0.0003 38.2 24.3 182 60-283 113-299 (401)
130 3ott_A Two-component system se 92.7 14 0.00048 40.6 23.5 186 61-283 393-592 (758)
131 1pgu_A Actin interacting prote 92.7 8.6 0.00029 40.2 20.8 104 166-283 183-289 (615)
132 3dm0_A Maltose-binding peripla 92.6 11 0.00037 40.8 22.0 194 38-281 436-636 (694)
133 4g56_B MGC81050 protein; prote 92.6 2.8 9.7E-05 41.5 15.9 189 38-277 145-343 (357)
134 2vdu_B TRNA (guanine-N(7)-)-me 92.6 5.1 0.00018 40.7 18.3 160 95-281 210-397 (450)
135 2z2n_A Virginiamycin B lyase; 92.6 6.7 0.00023 36.6 21.6 191 38-279 104-297 (299)
136 1jmx_B Amine dehydrogenase; ox 92.6 2.8 9.6E-05 40.3 15.5 34 35-74 46-79 (349)
137 1qks_A Cytochrome CD1 nitrite 92.5 12 0.00041 40.0 21.5 202 43-292 166-389 (567)
138 1rwi_B Serine/threonine-protei 92.4 4.6 0.00016 37.4 16.3 183 44-277 78-264 (270)
139 1pjx_A Dfpase, DIISOPROPYLFLUO 92.4 7.6 0.00026 36.8 21.0 218 37-279 22-258 (314)
140 1erj_A Transcriptional repress 92.3 9.7 0.00033 37.9 21.2 154 37-227 128-288 (393)
141 4gqb_B Methylosome protein 50; 92.2 2.9 9.9E-05 41.3 15.2 188 38-278 133-332 (344)
142 3azo_A Aminopeptidase; POP fam 92.1 8.6 0.00029 41.2 20.2 216 39-285 137-377 (662)
143 2pbi_B Guanine nucleotide-bind 92.1 9.6 0.00033 37.4 24.7 229 38-317 70-306 (354)
144 2xdw_A Prolyl endopeptidase; a 92.1 16 0.00054 39.8 25.7 198 59-285 207-424 (710)
145 4ggc_A P55CDC, cell division c 92.1 8 0.00028 36.4 20.1 86 218-318 222-307 (318)
146 1pjx_A Dfpase, DIISOPROPYLFLUO 92.1 5.9 0.0002 37.6 17.0 163 94-281 28-212 (314)
147 2aq5_A Coronin-1A; WD40 repeat 91.9 7.5 0.00026 38.6 18.2 211 37-285 86-309 (402)
148 1flg_A Protein (quinoprotein e 91.7 16 0.00054 39.1 25.5 117 43-181 68-201 (582)
149 4e54_B DNA damage-binding prot 91.7 2.5 8.6E-05 43.0 14.5 198 36-279 123-329 (435)
150 3mmy_A MRNA export factor; mRN 91.6 7.7 0.00026 37.2 17.5 90 60-176 108-200 (368)
151 1nir_A Nitrite reductase; hemo 91.6 8 0.00027 41.0 18.8 222 43-315 148-390 (543)
152 2aq5_A Coronin-1A; WD40 repeat 91.6 3.9 0.00013 40.8 15.6 197 45-284 145-349 (402)
153 1pby_B Quinohemoprotein amine 91.4 9.5 0.00033 36.1 17.7 206 36-281 86-314 (337)
154 2ynn_A Coatomer subunit beta'; 91.2 6.7 0.00023 37.4 16.4 194 40-282 64-264 (304)
155 2hes_X YDR267CP; beta-propelle 91.2 11 0.00039 36.3 19.4 189 94-317 118-319 (330)
156 2qc5_A Streptogramin B lactona 91.2 9.7 0.00033 35.5 24.6 196 38-284 67-266 (300)
157 2bkl_A Prolyl endopeptidase; m 91.1 8.4 0.00029 41.9 18.9 261 42-330 78-349 (695)
158 1flg_A Protein (quinoprotein e 91.1 18 0.00063 38.6 24.3 124 89-232 63-201 (582)
159 1itv_A MMP9; adaptive molecula 91.0 7.7 0.00026 35.3 15.5 146 43-229 16-177 (195)
160 3sfz_A APAF-1, apoptotic pepti 91.0 7.8 0.00027 45.1 19.5 152 37-229 620-777 (1249)
161 2pbi_B Guanine nucleotide-bind 90.9 13 0.00043 36.5 20.2 134 60-228 176-317 (354)
162 3sfz_A APAF-1, apoptotic pepti 90.9 2.5 8.4E-05 49.4 15.1 194 36-279 965-1160(1249)
163 2ecf_A Dipeptidyl peptidase IV 90.8 15 0.00052 39.8 20.7 149 166-331 263-414 (741)
164 3iuj_A Prolyl endopeptidase; h 90.8 21 0.00072 38.8 23.4 194 60-283 155-365 (693)
165 2xbg_A YCF48-like protein; pho 90.7 13 0.00045 36.2 22.2 199 36-285 83-287 (327)
166 3jro_A Fusion protein of prote 90.7 3.1 0.00011 46.0 14.9 182 94-318 20-230 (753)
167 2pm9_A Protein WEB1, protein t 90.7 11 0.00038 37.1 17.9 203 43-278 24-250 (416)
168 3k26_A Polycomb protein EED; W 90.6 12 0.00042 35.8 20.2 106 95-227 85-193 (366)
169 1sq9_A Antiviral protein SKI8; 90.6 14 0.00046 36.2 23.5 71 200-280 197-270 (397)
170 1yfq_A Cell cycle arrest prote 90.5 7.5 0.00026 37.1 16.0 195 41-280 66-285 (342)
171 4aow_A Guanine nucleotide-bind 90.4 5 0.00017 38.3 14.7 148 94-280 97-249 (340)
172 3fvz_A Peptidyl-glycine alpha- 90.2 14 0.00047 35.8 32.3 236 60-331 69-321 (329)
173 3scy_A Hypothetical bacterial 90.2 14 0.00049 35.8 24.4 76 200-286 221-302 (361)
174 3odt_A Protein DOA1; ubiquitin 90.1 12 0.00042 34.9 20.9 69 200-285 195-263 (313)
175 3e5z_A Putative gluconolactona 90.1 13 0.00044 35.1 17.3 195 38-279 74-288 (296)
176 2z3z_A Dipeptidyl aminopeptida 89.9 24 0.00081 38.0 27.5 153 165-332 234-391 (706)
177 2dg1_A DRP35, lactonase; beta 89.7 2.6 8.8E-05 40.7 11.9 155 94-277 55-213 (333)
178 2ynn_A Coatomer subunit beta'; 89.5 15 0.0005 35.0 23.1 227 37-318 18-251 (304)
179 4e54_B DNA damage-binding prot 89.2 2 6.8E-05 43.7 11.0 148 94-279 131-284 (435)
180 2hes_X YDR267CP; beta-propelle 89.2 16 0.00056 35.1 18.0 153 94-277 164-328 (330)
181 3dwl_C Actin-related protein 2 89.1 1.5 5E-05 43.2 9.7 151 94-278 22-178 (377)
182 1qhu_A Protein (hemopexin); be 89.0 14 0.00048 38.3 17.2 58 94-175 158-215 (460)
183 2ymu_A WD-40 repeat protein; u 88.8 24 0.00083 36.5 19.7 174 94-317 396-571 (577)
184 1yr2_A Prolyl oligopeptidase; 88.4 18 0.00061 39.6 18.9 197 60-283 189-401 (741)
185 1pex_A Collagenase-3, MMP-13; 88.4 15 0.00051 33.7 16.2 154 89-282 28-197 (207)
186 1q7f_A NHL, brain tumor CG1071 88.3 16 0.00056 34.0 22.7 182 94-315 40-226 (286)
187 3bg1_A Protein SEC13 homolog; 88.3 10 0.00036 36.3 15.1 72 38-124 19-95 (316)
188 3g4e_A Regucalcin; six bladed 88.2 18 0.00061 34.3 16.9 151 94-280 24-185 (297)
189 1yr2_A Prolyl oligopeptidase; 88.1 12 0.00042 41.0 17.3 162 94-284 278-448 (741)
190 3ei3_B DNA damage-binding prot 87.5 22 0.00076 34.6 18.7 145 96-277 87-236 (383)
191 2ghs_A AGR_C_1268P; regucalcin 87.3 16 0.00055 35.3 16.0 145 95-276 61-209 (326)
192 3no2_A Uncharacterized protein 87.2 20 0.0007 33.9 18.0 149 94-282 4-161 (276)
193 3hrp_A Uncharacterized protein 87.1 27 0.00093 35.2 28.7 209 37-285 135-362 (409)
194 4gga_A P55CDC, cell division c 87.1 26 0.00088 34.9 24.3 212 60-317 125-343 (420)
195 4a11_B DNA excision repair pro 87.0 9.9 0.00034 37.1 14.4 54 217-279 314-367 (408)
196 3dr2_A Exported gluconolactona 86.9 21 0.00073 33.9 18.5 218 34-284 47-274 (305)
197 3b7f_A Glycosyl hydrolase, BNR 86.6 22 0.00076 35.4 16.9 192 62-285 33-270 (394)
198 2xyi_A Probable histone-bindin 85.8 8.6 0.00029 38.8 13.4 141 97-277 196-353 (430)
199 2ghs_A AGR_C_1268P; regucalcin 85.7 26 0.0009 33.7 21.9 154 35-225 52-209 (326)
200 3odt_A Protein DOA1; ubiquitin 85.6 23 0.00078 32.9 21.2 191 37-280 23-217 (313)
201 2gop_A Trilobed protease; beta 85.6 16 0.00054 35.1 14.8 194 58-284 41-258 (347)
202 1xfd_A DIP, dipeptidyl aminope 85.4 35 0.0012 36.7 18.9 109 61-182 38-150 (723)
203 1xfd_A DIP, dipeptidyl aminope 85.4 35 0.0012 36.7 18.9 65 166-232 228-295 (723)
204 3o4h_A Acylamino-acid-releasin 85.4 23 0.00079 37.1 17.1 97 169-281 135-231 (582)
205 3dm0_A Maltose-binding peripla 85.4 25 0.00084 37.9 17.7 148 94-279 441-594 (694)
206 3azo_A Aminopeptidase; POP fam 85.2 20 0.00068 38.2 16.7 170 39-234 195-377 (662)
207 2pm7_B Protein transport prote 85.0 26 0.00088 33.0 21.1 73 38-125 15-92 (297)
208 3f3f_A Nucleoporin SEH1; struc 85.0 25 0.00086 32.9 24.1 63 201-278 182-250 (351)
209 3iz6_a 40S ribosomal protein R 84.9 31 0.0011 33.9 20.0 193 46-278 172-376 (380)
210 1itv_A MMP9; adaptive molecula 84.8 21 0.0007 32.3 14.1 105 42-177 63-176 (195)
211 1gen_A Gelatinase A; hydrolase 84.4 25 0.00086 32.4 14.9 152 89-279 35-204 (218)
212 1erj_A Transcriptional repress 84.4 33 0.0011 33.8 22.7 148 94-278 134-288 (393)
213 2pm7_B Protein transport prote 84.1 28 0.00097 32.7 17.1 72 201-285 219-294 (297)
214 1pex_A Collagenase-3, MMP-13; 84.0 21 0.00073 32.6 13.9 110 39-179 75-196 (207)
215 3hxj_A Pyrrolo-quinoline quino 83.5 30 0.001 32.6 17.1 160 62-279 80-246 (330)
216 1su3_A Interstitial collagenas 82.9 38 0.0013 34.9 16.8 156 89-283 267-438 (450)
217 3iuj_A Prolyl endopeptidase; h 81.2 62 0.0021 35.0 18.8 167 37-234 239-413 (693)
218 2ymu_A WD-40 repeat protein; u 80.6 56 0.0019 33.7 20.8 173 94-317 355-530 (577)
219 2mad_H Methylamine dehydrogena 80.5 48 0.0016 32.9 28.2 120 41-179 30-160 (373)
220 1pgu_A Actin interacting prote 80.4 57 0.002 33.7 22.4 143 95-277 456-614 (615)
221 3ju4_A Endo-N-acetylneuraminid 79.4 38 0.0013 34.3 14.2 187 119-317 269-483 (670)
222 3bg1_A Protein SEC13 homolog; 78.7 19 0.00064 34.5 12.2 31 251-287 273-304 (316)
223 1gen_A Gelatinase A; hydrolase 78.4 23 0.00078 32.7 12.0 112 37-177 81-204 (218)
224 4h5i_A Guanine nucleotide-exch 78.4 53 0.0018 32.1 19.6 203 37-277 138-343 (365)
225 3dr2_A Exported gluconolactona 78.3 34 0.0012 32.4 13.9 104 59-182 168-274 (305)
226 3pe7_A Oligogalacturonate lyas 78.3 51 0.0017 31.9 18.5 154 110-284 60-232 (388)
227 2p4o_A Hypothetical protein; p 77.3 50 0.0017 31.3 20.3 208 28-283 28-247 (306)
228 2mad_H Methylamine dehydrogena 77.0 61 0.0021 32.1 23.5 72 200-282 278-355 (373)
229 1npe_A Nidogen, entactin; glyc 76.4 48 0.0016 30.6 26.0 200 35-283 39-244 (267)
230 2xyi_A Probable histone-bindin 76.3 54 0.0019 32.7 15.4 60 200-277 243-309 (430)
231 3ba0_A Macrophage metalloelast 75.7 67 0.0023 32.0 16.5 155 89-282 185-355 (365)
232 2hz6_A Endoplasmic reticulum t 75.6 0.9 3.1E-05 45.7 1.6 69 36-124 3-75 (369)
233 1su3_A Interstitial collagenas 74.3 83 0.0028 32.3 17.8 149 43-231 272-437 (450)
234 2gop_A Trilobed protease; beta 74.2 61 0.0021 30.7 16.5 202 40-283 67-297 (347)
235 3lrv_A PRE-mRNA-splicing facto 74.0 63 0.0022 30.9 18.8 188 44-279 48-246 (343)
236 3o4h_A Acylamino-acid-releasin 74.0 19 0.00066 37.7 11.7 192 41-282 119-319 (582)
237 3i2n_A WD repeat-containing pr 74.0 41 0.0014 31.8 13.3 155 95-283 31-205 (357)
238 1sqj_A OXG-RCBH, oligoxylogluc 73.2 1.2E+02 0.004 33.6 28.8 201 61-285 38-277 (789)
239 1k32_A Tricorn protease; prote 72.3 1.4E+02 0.0047 33.9 23.5 58 217-284 317-375 (1045)
240 3b7f_A Glycosyl hydrolase, BNR 71.9 80 0.0027 31.1 21.6 211 43-284 67-329 (394)
241 2fp8_A Strictosidine synthase; 71.1 72 0.0025 30.3 19.4 202 60-284 40-276 (322)
242 2xzm_R RACK1; ribosome, transl 71.0 75 0.0026 30.4 21.2 67 38-120 82-150 (343)
243 3mmy_A MRNA export factor; mRN 70.8 71 0.0024 30.1 15.4 25 200-230 284-308 (368)
244 3frx_A Guanine nucleotide-bind 68.4 81 0.0028 29.8 24.5 148 39-228 72-229 (319)
245 4d9s_A UVB-resistance protein 68.1 1E+02 0.0035 30.8 20.2 19 33-51 77-95 (406)
246 2fp8_A Strictosidine synthase; 67.8 85 0.0029 29.8 18.9 199 43-278 91-314 (322)
247 3c7x_A Matrix metalloproteinas 67.6 36 0.0012 30.7 10.4 106 42-177 60-177 (196)
248 3fvz_A Peptidyl-glycine alpha- 67.1 89 0.003 29.8 25.5 210 38-277 96-322 (329)
249 3k26_A Polycomb protein EED; W 67.0 85 0.0029 29.5 16.7 97 201-317 85-183 (366)
250 3c7x_A Matrix metalloproteinas 66.7 73 0.0025 28.6 16.4 152 89-279 10-177 (196)
251 3mhp_C TIC62_peptide, ferredox 64.8 3.3 0.00011 24.1 1.6 14 495-508 10-23 (26)
252 2hz6_A Endoplasmic reticulum t 64.4 0.9 3.1E-05 45.7 -1.4 141 92-282 7-156 (369)
253 3c75_H MADH, methylamine dehyd 64.0 1.3E+02 0.0044 30.6 17.6 253 41-334 82-404 (426)
254 3ba0_A Macrophage metalloelast 63.9 80 0.0027 31.5 13.0 112 39-180 232-355 (365)
255 3lrv_A PRE-mRNA-splicing facto 63.9 1E+02 0.0035 29.3 14.6 66 200-280 138-204 (343)
256 1fwx_A Nitrous oxide reductase 63.6 70 0.0024 34.2 13.0 244 42-317 100-410 (595)
257 3frx_A Guanine nucleotide-bind 63.5 1E+02 0.0034 29.1 18.2 145 94-279 76-229 (319)
258 1k32_A Tricorn protease; prote 63.1 2E+02 0.0069 32.5 22.8 194 45-285 215-417 (1045)
259 2p4o_A Hypothetical protein; p 62.3 1.1E+02 0.0036 28.9 18.9 140 61-232 96-247 (306)
260 1hxn_A Hemopexin, HPX; heme, b 62.2 70 0.0024 29.4 11.4 108 37-175 22-144 (219)
261 3ju4_A Endo-N-acetylneuraminid 59.8 1.5E+02 0.0053 30.0 16.6 184 68-261 268-482 (670)
262 2p9w_A MAL S 1 allergenic prot 58.1 1.5E+02 0.005 29.2 21.8 230 60-316 35-305 (334)
263 1ck7_A Protein (gelatinase A); 57.5 64 0.0022 34.8 11.5 152 35-227 446-616 (631)
264 2p9w_A MAL S 1 allergenic prot 57.3 1.2E+02 0.0042 29.7 12.7 148 35-209 139-304 (334)
265 3gre_A Serine/threonine-protei 57.2 1.5E+02 0.0051 29.0 22.8 153 94-279 181-361 (437)
266 3oyo_A Hemopexin fold protein 56.7 1.2E+02 0.0041 27.8 15.5 105 93-226 69-198 (225)
267 3f3f_A Nucleoporin SEH1; struc 56.7 1.2E+02 0.0042 27.9 21.6 30 251-286 317-347 (351)
268 1npe_A Nidogen, entactin; glyc 56.5 1.2E+02 0.0041 27.7 21.0 158 36-232 83-244 (267)
269 2xe4_A Oligopeptidase B; hydro 56.5 1.3E+02 0.0044 32.9 14.3 98 165-275 294-398 (751)
270 3dw8_B Serine/threonine-protei 55.0 1.6E+02 0.0055 28.7 20.9 22 202-229 240-261 (447)
271 2xe4_A Oligopeptidase B; hydro 54.4 2.4E+02 0.0082 30.7 16.1 168 38-234 277-466 (751)
272 1ck7_A Protein (gelatinase A); 52.4 90 0.0031 33.6 11.6 153 89-279 448-617 (631)
273 2cn3_A Xyloglucanase, beta-1,4 52.0 2.6E+02 0.009 30.3 26.1 232 61-314 46-321 (737)
274 1hxn_A Hemopexin, HPX; heme, b 50.2 1.2E+02 0.0042 27.7 10.8 141 93-277 27-197 (219)
275 2ece_A 462AA long hypothetical 49.6 2.3E+02 0.008 29.1 17.8 129 41-177 93-239 (462)
276 3lp9_A LS-24; SEED albumin, pl 47.4 57 0.002 30.1 8.1 61 94-176 129-202 (227)
277 2oaj_A Protein SNI1; WD40 repe 45.9 3.5E+02 0.012 30.1 25.4 200 37-282 22-247 (902)
278 1nr0_A Actin interacting prote 44.6 2.9E+02 0.01 28.8 22.5 193 45-282 161-360 (611)
279 4d9s_A UVB-resistance protein 42.8 2.6E+02 0.009 27.7 17.4 18 192-209 286-304 (406)
280 2xzm_R RACK1; ribosome, transl 38.9 2.5E+02 0.0087 26.4 18.5 24 94-122 87-110 (343)
281 3hxj_A Pyrrolo-quinoline quino 38.2 2.4E+02 0.0083 26.0 19.1 164 60-281 117-289 (330)
282 1z68_A Fibroblast activation p 37.7 1.3E+02 0.0046 32.0 10.5 108 110-233 36-146 (719)
283 4hvt_A Ritya.17583.B, post-pro 37.6 4.3E+02 0.015 28.7 20.0 104 165-281 268-385 (711)
284 3sjl_D Methylamine dehydrogena 37.1 3.3E+02 0.011 27.2 22.3 74 199-283 290-369 (386)
285 4ggc_A P55CDC, cell division c 35.9 2.5E+02 0.0086 25.5 23.1 72 36-123 29-102 (318)
286 1l6x_B Minimized B-domain of p 35.7 7.6 0.00026 24.3 -0.0 12 517-528 4-15 (34)
287 3vu4_A KMHSV2; beta-propeller 35.0 3E+02 0.01 26.2 23.0 56 251-317 206-262 (355)
288 3oyo_A Hemopexin fold protein 34.9 1.1E+02 0.0039 28.0 7.9 64 40-118 124-197 (225)
289 2oiz_A Aromatic amine dehydrog 33.6 2.9E+02 0.0098 26.6 11.4 70 38-120 260-335 (361)
290 1nr0_A Actin interacting prote 33.4 4.3E+02 0.015 27.4 21.1 154 45-232 203-361 (611)
291 1z68_A Fibroblast activation p 33.1 3.5E+02 0.012 28.6 12.9 107 165-282 336-448 (719)
292 1n7d_A LDL receptor, low-densi 32.2 5.1E+02 0.017 27.9 14.6 199 34-279 408-616 (699)
293 1n7d_A LDL receptor, low-densi 31.3 5.2E+02 0.018 27.8 15.7 179 61-283 387-577 (699)
294 4a5s_A Dipeptidyl peptidase 4 30.8 4.6E+02 0.016 28.0 13.5 70 110-182 36-108 (740)
295 4a5s_A Dipeptidyl peptidase 4 30.1 5.3E+02 0.018 27.5 17.3 66 60-126 36-108 (740)
296 4hvt_A Ritya.17583.B, post-pro 29.6 5.7E+02 0.02 27.7 14.3 150 59-234 268-437 (711)
297 3hrp_A Uncharacterized protein 27.5 4.5E+02 0.015 25.8 23.6 168 37-234 176-362 (409)
298 3dw8_B Serine/threonine-protei 27.1 4.3E+02 0.015 25.4 17.5 29 200-234 353-381 (447)
299 3m0c_C LDL receptor, low-densi 24.6 7.3E+02 0.025 27.2 24.9 181 60-284 404-596 (791)
300 2oiz_A Aromatic amine dehydrog 24.4 4.7E+02 0.016 25.0 22.7 72 200-285 265-342 (361)
301 3sjl_D Methylamine dehydrogena 24.1 3E+02 0.01 27.5 9.4 78 37-124 285-368 (386)
302 3sre_A PON1, serum paraoxonase 22.4 5.5E+02 0.019 25.1 14.9 149 109-277 82-252 (355)
303 3a0f_A Xyloglucanase; beta-pro 22.2 7.7E+02 0.026 26.7 24.8 207 61-285 44-292 (763)
304 3vu4_A KMHSV2; beta-propeller 21.3 5.2E+02 0.018 24.4 21.9 65 200-278 206-272 (355)
305 2ece_A 462AA long hypothetical 21.2 6.7E+02 0.023 25.6 18.2 121 144-279 95-239 (462)
306 1zda_A Mini protein A domain, 20.8 25 0.00087 22.5 0.4 12 517-528 9-20 (38)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.7e-43 Score=355.26 Aligned_cols=283 Identities=18% Similarity=0.318 Sum_probs=239.1
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCC--
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGT-- 103 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~-- 103 (535)
++.|.+|.+|+++.+ +++||++||.. ....+++++||+.+++|..+. .+|.+|.+|+++.++++|||+||.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~i~v~GG~~--~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~ 81 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV--GRLIYTAGGYF--RQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNN 81 (308)
T ss_dssp ------------CCC--CCCEEEECCBS--SSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEE
T ss_pred ccCCeeeCCccccCC--CCEEEEEeCcC--CCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcC
Confidence 456889999999998 66899999983 346789999999999999975 889999999999999999999998
Q ss_pred --CCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEe
Q 009435 104 --DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (535)
Q Consensus 104 --~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~ 181 (535)
++...++++++||+.+++|++++ ++|.+|..|+++.++++|||+||.. ....++++++||+.+++|+.+
T Consensus 82 ~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 82 SPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSH------GCIHHNSVERYEPERDEWHLV 152 (308)
T ss_dssp ETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEE------TTEECCCEEEEETTTTEEEEC
T ss_pred CCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCC------CCcccccEEEECCCCCeEeEC
Confidence 55567899999999999999987 7899999999999999999999953 345678999999999999999
Q ss_pred ccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccC
Q 009435 182 TTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 261 (535)
Q Consensus 182 ~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~ 261 (535)
. ++|.+|..|++++++++|||+||.+... .++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||..
T Consensus 153 ~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~ 225 (308)
T 1zgk_A 153 A---PMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITA---MNTIRSGAGVCVLHNCIYAAGGYD 225 (308)
T ss_dssp C---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBC
T ss_pred C---CCCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCC---CCCccccceEEEECCEEEEEeCCC
Confidence 7 6789999999999999999999987665 48899999999999999976 888999999999999999999987
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccccccccc
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (535)
.. ...+++++||+++++|+.+..+ |.+|..++++.+ +++|||+||.+.. ..+++++.+++....|..+..
T Consensus 226 ~~-~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 226 GQ-DQLNSVERYDVETETWTFVAPM---KHRRSALGITVH----QGRIYVLGGYDGH-TFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp SS-SBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEE----TTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEE
T ss_pred CC-CccceEEEEeCCCCcEEECCCC---CCCccceEEEEE----CCEEEEEcCcCCC-cccceEEEEcCCCCEEeecCC
Confidence 53 4589999999999999998754 778888887665 7899999998763 567899999998888866543
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.2e-41 Score=339.55 Aligned_cols=284 Identities=19% Similarity=0.282 Sum_probs=244.9
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
++.||++||.+.. ..+++++||+.+++|..+. .+|.+|..|+++.++++|||+||.++...++++++||+.+++|
T Consensus 15 ~~~i~v~GG~~~~--~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPK--AIRSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSS--BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCC--CCCcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCce
Confidence 5689999998653 5688999999999999975 8899999999999999999999998878889999999999999
Q ss_pred EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCE
Q 009435 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~ 202 (535)
++++ ++|.+|..|+++.++++|||+||.. ....++++++||+.+++|+.+. ++|.+|..|++++++++
T Consensus 90 ~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~ 157 (302)
T 2xn4_A 90 TSVA---NMRDRRSTLGAAVLNGLLYAVGGFD------GSTGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGL 157 (302)
T ss_dssp EEEC---CCSSCCBSCEEEEETTEEEEEEEEC------SSCEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE
T ss_pred eeCC---CCCccccceEEEEECCEEEEEcCCC------CCccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCE
Confidence 9987 7899999999999999999999963 3346799999999999999997 67889999999999999
Q ss_pred EEEEecCCCCC-cccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 203 IIVIGGEDGHD-YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 203 lyv~GG~~~~~-~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
|||+||.+... ..++++++||+.+++|+.+.. +|.+|.+|+++.++++|||+||... ....+++++||+++++|+
T Consensus 158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDG-PLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp EEEECCEETTTTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBSS-SSBCCCEEEEETTTTEEE
T ss_pred EEEEeCCCCCCCccccEEEEEeCCCCcEEECCC---CccccccccEEEECCEEEEECCCCC-CcccceEEEEeCCCCCEe
Confidence 99999986653 357899999999999999976 8899999999999999999999865 345789999999999999
Q ss_pred EEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccccccccchhhhhhhhhhhhccccCCccC
Q 009435 282 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHD 361 (535)
Q Consensus 282 ~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 361 (535)
.+..+ |.+|..|+++.+ +++|||+||.+.. ..+++++.+++....|..+.. ..+.++..
T Consensus 234 ~~~~~---~~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~-------------~~~~~r~~ 292 (302)
T 2xn4_A 234 QVADM---NMCRRNAGVCAV----NGLLYVVGGDDGS-CNLASVEYYNPTTDKWTVVSS-------------CMSTGRSY 292 (302)
T ss_dssp EECCC---SSCCBSCEEEEE----TTEEEEECCBCSS-SBCCCEEEEETTTTEEEECSS-------------CCSSCCBS
T ss_pred eCCCC---CCccccCeEEEE----CCEEEEECCcCCC-cccccEEEEcCCCCeEEECCc-------------ccCccccc
Confidence 99754 677888876554 7999999998754 457899999998888765531 23456666
Q ss_pred cceEEec
Q 009435 362 RALVRID 368 (535)
Q Consensus 362 ~~~~~~~ 368 (535)
+.++.++
T Consensus 293 ~~~~~~~ 299 (302)
T 2xn4_A 293 AGVTVID 299 (302)
T ss_dssp CEEEEEE
T ss_pred ceEEEec
Confidence 6666654
No 3
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.8e-41 Score=337.27 Aligned_cols=270 Identities=21% Similarity=0.372 Sum_probs=237.0
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe-
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT- 121 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~- 121 (535)
++.||++||........+++++||+.+++|..++ .+|.+|.+|+++.++++|||+||.++...++++++||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 5689999995444457789999999999999976 788999999999999999999999877788999999999999
Q ss_pred --EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee
Q 009435 122 --WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (535)
Q Consensus 122 --W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~ 199 (535)
|+.+. ++|.+|..|+++.++++|||+||.. .....+++++||+.+++|+.+. ++|.+|..|+++++
T Consensus 91 ~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~------~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~ 158 (301)
T 2vpj_A 91 GVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFD------GSRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVA 158 (301)
T ss_dssp CCCEEEC---CCSSCCBSCEEEEETTEEEEECCBC------SSCBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEE
T ss_pred CeeEECC---CCCCCccceeEEEECCEEEEEcccC------CCcccceEEEEcCCCCeEEECC---CCCCCcccceEEEE
Confidence 99986 7899999999999999999999964 2345789999999999999997 57889999999999
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
+++||++||.+... .++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||.... ...+++++||+++++
T Consensus 159 ~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 159 SGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEECCBCSSC-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCCC---CCcccccceEEEECCEEEEEeCCCCC-cccceEEEEeCCCCc
Confidence 99999999987654 78999999999999999975 78999999999999999999998753 347899999999999
Q ss_pred EEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccccccccc
Q 009435 280 WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (535)
Q Consensus 280 W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (535)
|+.+..+ |.+|..|+++.+ +++|||+||.+.. ..+++++.++.....|..+..
T Consensus 234 W~~~~~~---p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 234 WTTVTSM---TTPRCYVGATVL----RGRLYAIAGYDGN-SLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp EEEECCC---SSCCBSCEEEEE----TTEEEEECCBCSS-SBEEEEEEEETTTTEEEEEEE
T ss_pred EEECCCC---CCcccceeEEEE----CCEEEEEcCcCCC-cccccEEEEcCCCCeEEEcCC
Confidence 9999654 778888886655 7899999998765 467899999998888766543
No 4
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=5.9e-41 Score=338.22 Aligned_cols=281 Identities=19% Similarity=0.319 Sum_probs=243.2
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEE
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~ 123 (535)
+.||++||... .+++++||+.+++|..+. ++|.+|.+|+++.++++|||+||.+ ...++++++||+.+++|+
T Consensus 12 ~~l~~~GG~~~----~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 12 DYRIALFGGSQ----PQSCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CEEEEEECCSS----TTSEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEE
T ss_pred ceEEEEeCCCC----CceEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEE
Confidence 47999999765 588999999999999975 7899999999999999999999988 667899999999999999
Q ss_pred eccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEE
Q 009435 124 SPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKI 203 (535)
Q Consensus 124 ~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~l 203 (535)
.+. ++|.+|.+|+++.++++|||+||.+. .....+++++||+.+++|+.+. ++|.+|..|++++++++|
T Consensus 84 ~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i 152 (306)
T 3ii7_A 84 SKL---GPPTPRDSLAACAAEGKIYTSGGSEV-----GNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLI 152 (306)
T ss_dssp EEE---CCSSCCBSCEEEEETTEEEEECCBBT-----TBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEE
T ss_pred ECC---CCCccccceeEEEECCEEEEECCCCC-----CCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEE
Confidence 887 78999999999999999999999631 3446789999999999999996 678999999999999999
Q ss_pred EEEecCCCCCc---ccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcE
Q 009435 204 IVIGGEDGHDY---YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (535)
Q Consensus 204 yv~GG~~~~~~---~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (535)
||+||.+.... .++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||.... ...+++++||+.+++|
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEE
T ss_pred EEECCCCCCCCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcE
Confidence 99999866543 28999999999999999986 88899999999999999999998654 4578999999999999
Q ss_pred EEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccccccccchhhhhhhhhhhhccccCCcc
Q 009435 281 TKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVH 360 (535)
Q Consensus 281 ~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~ 360 (535)
+.+..+ |.+|..|+++.+ +++|||+||.+.. ..+++++.+++....|..+..+ +.++.
T Consensus 229 ~~~~~~---p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~--------------~~~r~ 286 (306)
T 3ii7_A 229 KMVSPM---PWKGVTVKCAAV----GSIVYVLAGFQGV-GRLGHILEYNTETDKWVANSKV--------------RAFPV 286 (306)
T ss_dssp EECCCC---SCCBSCCEEEEE----TTEEEEEECBCSS-SBCCEEEEEETTTTEEEEEEEE--------------ECCSC
T ss_pred EECCCC---CCCccceeEEEE----CCEEEEEeCcCCC-eeeeeEEEEcCCCCeEEeCCCc--------------ccccc
Confidence 998654 778988887665 7899999998755 4678999999998888765432 35566
Q ss_pred CcceEEecc
Q 009435 361 DRALVRIDT 369 (535)
Q Consensus 361 ~~~~~~~~~ 369 (535)
.+.++.+..
T Consensus 287 ~~~~~~~~~ 295 (306)
T 3ii7_A 287 TSCLICVVD 295 (306)
T ss_dssp TTCEEEEEE
T ss_pred eeEEEEECC
Confidence 666666544
No 5
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=6.1e-41 Score=345.51 Aligned_cols=291 Identities=20% Similarity=0.237 Sum_probs=231.3
Q ss_pred CCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcC--CCeEEEeeccCCCC-CCCCceEEEEECCEEEEEcCC
Q 009435 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPP-TPRDSHSCTTVGENLYVFGGT 103 (535)
Q Consensus 27 ~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~~l~~~g~~P-~~R~~hs~~~~~~~Iyv~GG~ 103 (535)
++|.+|.+|+++++ +++|||+||... +++++||+. +++|+.++ ++| .+|.+|+++.++++|||+||.
T Consensus 5 ~lP~~r~~~~~~~~--~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~ 74 (357)
T 2uvk_A 5 ETPVPFKSGTGAID--NDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGI 74 (357)
T ss_dssp CCSSCCCSCEEEEE--TTEEEEECGGGT-----TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCE
T ss_pred CCCccccceEEEEE--CCEEEEEeCcCC-----CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCC
Confidence 47889999999888 678999999763 479999998 49999975 788 899999999999999999998
Q ss_pred -C----CCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCC--------------------
Q 009435 104 -D----GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSN-------------------- 158 (535)
Q Consensus 104 -~----~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~-------------------- 158 (535)
+ ....++++++||+.+++|++++... |.+|.+|+++.++++|||+||......
T Consensus 75 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 75 GKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp EECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 3 2346899999999999999988422 599999999999999999999642100
Q ss_pred --------CCCceeeeeEEEEECCCccEEEeccCCCCCCCCC-ceeEEeeCCEEEEEecCCCCCcccCceEEEEC--CCC
Q 009435 159 --------TNDEVYYNDLYILNTETFVWKRATTSGNPPSARD-SHTCSSWKNKIIVIGGEDGHDYYLSDVHILDT--DTL 227 (535)
Q Consensus 159 --------~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~-~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~--~t~ 227 (535)
.....+++++++||+.+++|+.+. ++|.+|. .|++++++++|||+||.+......+++++||+ +++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 000024689999999999999996 4565544 49999999999999998766556889999987 999
Q ss_pred cEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCC----------------CCccCcEEEEecCCCcEEEEeeCCCCCC
Q 009435 228 TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS----------------QNLYDDLYMIDVDSGLWTKVITTGEGPS 291 (535)
Q Consensus 228 ~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~----------------~~~~~dv~~yd~~~~~W~~l~~~~~~p~ 291 (535)
+|+.+... ..|..|.+|+++.++++|||+||.... ...++++++||+++++|+.+..+ |.
T Consensus 230 ~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~ 305 (357)
T 2uvk_A 230 KWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQ 305 (357)
T ss_dssp EEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC---SS
T ss_pred cEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC---CC
Confidence 99999762 123456788999999999999997532 12346899999999999999775 77
Q ss_pred CceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccccccccc
Q 009435 292 ARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 340 (535)
Q Consensus 292 ~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~~~~~~~ 340 (535)
+|..|+++.+ +++|||+||++.....++|+|.|+....+|.++..
T Consensus 306 ~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 306 GRAYGVSLPW----NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCBSSEEEEE----TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CcccceeEEe----CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 8988887654 89999999999877778999999988777765544
No 6
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=327.92 Aligned_cols=253 Identities=19% Similarity=0.328 Sum_probs=223.4
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCC
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG 105 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~ 105 (535)
...|.+|.+|+++++ +++|||+||.+... ..+++++||+.+++|+.++ ++|.+|..|+++.++++|||+||.++
T Consensus 46 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~ 119 (302)
T 2xn4_A 46 AELPSRRCRAGMVYM--AGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDG 119 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEESCBCSSS-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECS
T ss_pred ccCCcccccceEEEE--CCEEEEEeCcCCCc-cccceEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCC
Confidence 367889999999988 66899999987543 5689999999999999976 78999999999999999999999988
Q ss_pred CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC
Q 009435 106 MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (535)
Q Consensus 106 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~ 185 (535)
...++++++||+.+++|+.++ ++|.+|..|+++.++++|||+||.... .....+++++||+.+++|+.+.
T Consensus 120 ~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~yd~~~~~W~~~~--- 189 (302)
T 2xn4_A 120 STGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVA----SRQCLSTVECYNATTNEWTYIA--- 189 (302)
T ss_dssp SCEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETT----TTEECCCEEEEETTTTEEEEEC---
T ss_pred CccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCC----CCccccEEEEEeCCCCcEEECC---
Confidence 778899999999999999987 789999999999999999999997422 2356789999999999999996
Q ss_pred CCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCC
Q 009435 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN 265 (535)
Q Consensus 186 ~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~ 265 (535)
++|.+|..|++++++++|||+||.++.. ..+++++||+++++|+.+.. +|.+|..|+++.++++|||+||.... .
T Consensus 190 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~i~v~GG~~~~-~ 264 (302)
T 2xn4_A 190 EMSTRRSGAGVGVLNNLLYAVGGHDGPL-VRKSVEVYDPTTNAWRQVAD---MNMCRRNAGVCAVNGLLYVVGGDDGS-C 264 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBSSSS-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS-S
T ss_pred CCccccccccEEEECCEEEEECCCCCCc-ccceEEEEeCCCCCEeeCCC---CCCccccCeEEEECCEEEEECCcCCC-c
Confidence 6789999999999999999999987653 67899999999999999986 88899999999999999999998653 4
Q ss_pred ccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeee
Q 009435 266 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (535)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~ 301 (535)
..+++++||+++++|+.+.. ..|.+|..|+++++
T Consensus 265 ~~~~v~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~ 298 (302)
T 2xn4_A 265 NLASVEYYNPTTDKWTVVSS--CMSTGRSYAGVTVI 298 (302)
T ss_dssp BCCCEEEEETTTTEEEECSS--CCSSCCBSCEEEEE
T ss_pred ccccEEEEcCCCCeEEECCc--ccCcccccceEEEe
Confidence 57899999999999999862 24788988886655
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1e-39 Score=329.95 Aligned_cols=250 Identities=21% Similarity=0.375 Sum_probs=222.2
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcC---CCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcC
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYG---KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGG 102 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~---~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG 102 (535)
...|.+|.+|+++++ +++|||+||.. ......+++++||+.+++|+.++ ++|.+|..|+++.++++|||+||
T Consensus 55 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG 129 (308)
T 1zgk_A 55 ADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGG 129 (308)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECC
T ss_pred CCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcC
Confidence 367889999999988 66899999983 33346789999999999999975 78999999999999999999999
Q ss_pred CCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 103 TDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 103 ~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
.++...++++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||... ....+++++||+.+++|+.+.
T Consensus 130 ~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~ 200 (308)
T 1zgk_A 130 SHGCIHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGFDG------TNRLNSAECYYPERNEWRMIT 200 (308)
T ss_dssp EETTEECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCS------SCBCCCEEEEETTTTEEEECC
T ss_pred CCCCcccccEEEECCCCCeEeECC---CCCccccceEEEEECCEEEEEeCCCC------CCcCceEEEEeCCCCeEeeCC
Confidence 987778899999999999999987 78999999999999999999999642 234789999999999999997
Q ss_pred cCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCC
Q 009435 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~ 262 (535)
++|.+|..|++++++++|||+||.+... .++++++||+++++|+.+.. +|.+|..|+++.++++|||+||...
T Consensus 201 ---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 201 ---AMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAP---MKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp ---CCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCS
T ss_pred ---CCCCccccceEEEECCEEEEEeCCCCCC-ccceEEEEeCCCCcEEECCC---CCCCccceEEEEECCEEEEEcCcCC
Confidence 6788999999999999999999987654 58899999999999999985 8899999999999999999999865
Q ss_pred CCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeee
Q 009435 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDC 300 (535)
Q Consensus 263 ~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~ 300 (535)
....+++++||+++++|+.+..+ |.+|+.|++++
T Consensus 274 -~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~ 307 (308)
T 1zgk_A 274 -HTFLDSVECYDPDTDTWSEVTRM---TSGRSGVGVAV 307 (308)
T ss_dssp -SCBCCEEEEEETTTTEEEEEEEC---SSCCBSCEEEE
T ss_pred -CcccceEEEEcCCCCEEeecCCC---CCCcccceeEe
Confidence 45678999999999999999776 78898887654
No 8
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=327.61 Aligned_cols=252 Identities=20% Similarity=0.364 Sum_probs=223.1
Q ss_pred CCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCC-C
Q 009435 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD-G 105 (535)
Q Consensus 27 ~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~-~ 105 (535)
.+|.+|.+|+++++ +++|||+||.+ ....+++++||+.+++|..+. ++|.+|.+|+++.++++|||+||.+ +
T Consensus 41 ~~p~~r~~~~~~~~--~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~ 113 (306)
T 3ii7_A 41 CPFEKRRDAACVFW--DNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVG 113 (306)
T ss_dssp CCSCCCBSCEEEEE--TTEEEEECCBS--SSBCCEEEEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTT
T ss_pred CCCcccceeEEEEE--CCEEEEEeCCC--CCCcceEEEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCC
Confidence 57889999999998 66899999988 447789999999999999976 7899999999999999999999997 5
Q ss_pred CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC
Q 009435 106 MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (535)
Q Consensus 106 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~ 185 (535)
...++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||..... ......+++++||+.+++|+.+.
T Consensus 114 ~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~yd~~~~~W~~~~--- 185 (306)
T 3ii7_A 114 NSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNN--VSGRVLNSCEVYDPATETWTELC--- 185 (306)
T ss_dssp BSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCT--TTCEECCCEEEEETTTTEEEEEC---
T ss_pred CcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCC--CcccccceEEEeCCCCCeEEECC---
Confidence 668899999999999999986 7899999999999999999999974321 12245899999999999999997
Q ss_pred CCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCC
Q 009435 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN 265 (535)
Q Consensus 186 ~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~ 265 (535)
++|.+|..|++++++++|||+||.+.. ..++++++||+++++|+.+.. +|.+|.+|+++.++++|||+||.... .
T Consensus 186 ~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~ 260 (306)
T 3ii7_A 186 PMIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMVSP---MPWKGVTVKCAAVGSIVYVLAGFQGV-G 260 (306)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCEETT-EEBCCEEEEETTTTEEEECCC---CSCCBSCCEEEEETTEEEEEECBCSS-S
T ss_pred CccchhhcceEEEECCEEEEEeCCCCC-CCCceEEEeeCCCCcEEECCC---CCCCccceeEEEECCEEEEEeCcCCC-e
Confidence 678999999999999999999998765 367899999999999999976 88999999999999999999998653 4
Q ss_pred ccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeee
Q 009435 266 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (535)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~ 301 (535)
..+++++||+++++|+.+..+ |.+|..|+++++
T Consensus 261 ~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~ 293 (306)
T 3ii7_A 261 RLGHILEYNTETDKWVANSKV---RAFPVTSCLICV 293 (306)
T ss_dssp BCCEEEEEETTTTEEEEEEEE---ECCSCTTCEEEE
T ss_pred eeeeEEEEcCCCCeEEeCCCc---ccccceeEEEEE
Confidence 678999999999999999876 678888776554
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=334.47 Aligned_cols=260 Identities=20% Similarity=0.317 Sum_probs=223.6
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcC-----CCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEE
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYG-----KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVF 100 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~-----~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~ 100 (535)
.+.|.+|.+|+++++ +++|||+||.. ......+++++||+.+++|+.++ ++|.+|.+|+++.++++|||+
T Consensus 30 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~ 104 (315)
T 4asc_A 30 LSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVV 104 (315)
T ss_dssp CCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEE
T ss_pred CCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEE
Confidence 345779999998887 56799999962 22234567999999999999965 789999999999999999999
Q ss_pred cCCC---CCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc
Q 009435 101 GGTD---GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (535)
Q Consensus 101 GG~~---~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~ 177 (535)
||.+ +...++++++||+.+++|++++ ++|.+|.+|+++.++++|||+||.. .....++++++||+.+++
T Consensus 105 GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-----~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 105 GGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIGGKG-----SDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBC-----TTSCBCCCEEEEETTTTE
T ss_pred eCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEEEEeCCC-----CCCcccceEEEEeCCCCe
Confidence 9974 3567899999999999999887 7899999999999999999999963 234568999999999999
Q ss_pred EEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEE
Q 009435 178 WKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVF 257 (535)
Q Consensus 178 W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~ 257 (535)
|+.+. ++|.+|..|++++++++|||+||.+... .++++++||+++++|+.+.. +|.+|..|+++.++++|||+
T Consensus 177 W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~l~v~ 249 (315)
T 4asc_A 177 WKELA---PMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNKWAPFEA---FPQERSSLSLVSLVGTLYAI 249 (315)
T ss_dssp EEECC---CCSSCCBSCEEEEETTEEEEEEEECSSS-EEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEE
T ss_pred EEECC---CCCCchhceEEEEECCEEEEEeccCCCC-ccceEEEEECCCCeEEECCC---CCCcccceeEEEECCEEEEE
Confidence 99997 6789999999999999999999987654 67899999999999999976 88999999999999999999
Q ss_pred eccCCC----C----CccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcc
Q 009435 258 GGFTDS----Q----NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (535)
Q Consensus 258 GG~~~~----~----~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (535)
||.... + ..++++|+||+++++|+.+ .|.+|..++++++ +++||++..
T Consensus 250 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~----~~~l~v~~~ 305 (315)
T 4asc_A 250 GGFATLETESGELVPTELNDIWRYNEEEKKWEGV-----LREIAYAAGATFL----PVRLNVLRL 305 (315)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE-----ESCSSCCSSCEEE----EEEECGGGS
T ss_pred CCccccCcCCccccccccCcEEEecCCCChhhhh-----ccCCcCccceEEe----CCEEEEEEe
Confidence 998531 1 3468999999999999999 2567888877665 688888754
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=8.1e-39 Score=321.59 Aligned_cols=249 Identities=22% Similarity=0.357 Sum_probs=222.7
Q ss_pred CCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCe---EEEeeccCCCCCCCCceEEEEECCEEEEEcCC
Q 009435 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT---WSQPVIKGSPPTPRDSHSCTTVGENLYVFGGT 103 (535)
Q Consensus 27 ~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~---W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~ 103 (535)
..|.+|.+|+++++ +++||++||.+.. ...+++++||+.+++ |+.+. ++|.+|..|+++.++++|||+||.
T Consensus 48 ~~p~~r~~~~~~~~--~~~l~v~GG~~~~-~~~~~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~ 121 (301)
T 2vpj_A 48 SITRKRRYVASVSL--HDRIYVIGGYDGR-SRLSSVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGF 121 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSS-CBCCCEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCB
T ss_pred CCChhhccccEEEE--CCEEEEEcCCCCC-ccCceEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEccc
Confidence 47889999999998 5689999998743 367899999999999 99975 889999999999999999999999
Q ss_pred CCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEecc
Q 009435 104 DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (535)
Q Consensus 104 ~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~ 183 (535)
++...++++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||+. .....+++++||+.+++|+.+.
T Consensus 122 ~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~~d~~~~~W~~~~- 191 (301)
T 2vpj_A 122 DGSRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYD------GLNILNSVEKYDPHTGHWTNVT- 191 (301)
T ss_dssp CSSCBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBC------SSCBCCCEEEEETTTTEEEEEC-
T ss_pred CCCcccceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCC------CCcccceEEEEeCCCCcEEeCC-
Confidence 88778899999999999999987 6889999999999999999999964 2336899999999999999996
Q ss_pred CCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCC
Q 009435 184 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (535)
Q Consensus 184 ~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~ 263 (535)
++|.+|..|++++++++|||+||.+... ..+++++||+++++|+.+.. +|.+|..|+++.++++|||+||....
T Consensus 192 --~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 192 --PMATKRSGAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIRTDSWTTVTS---MTTPRCYVGATVLRGRLYAIAGYDGN 265 (301)
T ss_dssp --CCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred --CCCcccccceEEEECCEEEEEeCCCCCc-ccceEEEEeCCCCcEEECCC---CCCcccceeEEEECCEEEEEcCcCCC
Confidence 6789999999999999999999987654 58899999999999999976 88999999999999999999998653
Q ss_pred CCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeee
Q 009435 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 301 (535)
Q Consensus 264 ~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~ 301 (535)
...+++++||+++++|+.+..+ |.+|+.|+++++
T Consensus 266 -~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~ 299 (301)
T 2vpj_A 266 -SLLSSIECYDPIIDSWEVVTSM---GTQRCDAGVCVL 299 (301)
T ss_dssp -SBEEEEEEEETTTTEEEEEEEE---EEEEESCEEEEE
T ss_pred -cccccEEEEcCCCCeEEEcCCC---CcccccceEEEe
Confidence 4578999999999999999876 778998887654
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=328.06 Aligned_cols=265 Identities=18% Similarity=0.284 Sum_probs=226.7
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCC----C-C-CCCCcEEEEEC
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD----G-M-NPLRDLHILDT 117 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~----~-~-~~~~~~~~yd~ 117 (535)
+.||++|| +++++||+.+++|...+ .+.|.+|.+|+++.++++|||+||.. . . ...+++++||+
T Consensus 5 ~~l~~~GG--------~~~~~yd~~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~ 74 (315)
T 4asc_A 5 DLIFMISE--------EGAVAYDPAANECYCAS--LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH 74 (315)
T ss_dssp EEEEEEET--------TEEEEEETTTTEEEEEE--CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred eEEEEEcC--------CceEEECCCCCeEecCC--CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence 46999999 57999999999999732 34477899999999999999999962 1 1 23456999999
Q ss_pred CCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEE
Q 009435 118 SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (535)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~ 197 (535)
.+++|+.++ ++|.+|.+|+++.++++|||+||.... ......+++++||+.+++|+.+. ++|.+|..|+++
T Consensus 75 ~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~ 145 (315)
T 4asc_A 75 LDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIK---DGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVL 145 (315)
T ss_dssp TTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESS---TTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEE
T ss_pred CCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCC---CCCcccceEEEECCCCCcEeECC---CCCCcccceeEE
Confidence 999999886 789999999999999999999996421 23456899999999999999997 678999999999
Q ss_pred eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 198 ~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
+++++|||+||.+.....++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||.... ...+++++||+++
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~ 221 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP---MQTARSLFGATVHDGRIIVAAGVTDT-GLTSSAEVYSITD 221 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEEEEECSS-SEEEEEEEEETTT
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC---CCCchhceEEEEECCEEEEEeccCCC-CccceEEEEECCC
Confidence 9999999999996666689999999999999999986 88999999999999999999998654 4678999999999
Q ss_pred CcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC----C----CccCcEEEEeccccccccc
Q 009435 278 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS----L----EALDDMYYLYTGLVNERKL 338 (535)
Q Consensus 278 ~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~----~----~~~~dv~~l~~~~~~~~~~ 338 (535)
++|+.+..+ |.+|..|+++.+ +++|||+||.+.. . ..++++|.+++....|..+
T Consensus 222 ~~W~~~~~~---p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 222 NKWAPFEAF---PQERSSLSLVSL----VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TEEEEECCC---SSCCBSCEEEEE----TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CeEEECCCC---CCcccceeEEEE----CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 999999754 788998887655 7899999998642 1 3578999999988887655
No 12
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=8.9e-39 Score=324.43 Aligned_cols=274 Identities=19% Similarity=0.306 Sum_probs=231.1
Q ss_pred CcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCC--CC
Q 009435 29 PGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTD--GM 106 (535)
Q Consensus 29 P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~--~~ 106 (535)
..+|.++... +.||++||. .+++||+.+++|...+. +.|.+|..|+++.++++|||+||.. ..
T Consensus 6 ~~~r~~~~~~-----~~i~~~GG~--------~~~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 70 (318)
T 2woz_A 6 DIPRHGMFVK-----DLILLVNDT--------AAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEE 70 (318)
T ss_dssp SSCCCCCSEE-----EEEEEECSS--------EEEEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC---
T ss_pred ccccccceec-----chhhhcccc--------ceEEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCcc
Confidence 3467666542 369999993 48999999999998542 4567899999999999999999963 11
Q ss_pred ----CCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 107 ----NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 107 ----~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
...+++++||+.+++|++++ ++|.+|.+|+++.++++|||+||... ......+++++||+.+++|+.+.
T Consensus 71 ~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 71 NKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDL----QTEASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp ----CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBT----TTCCEEEEEEEEETTTTEEEEEC
T ss_pred ccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccC----CCCcccceEEEEeCCCCCEeECC
Confidence 12345999999999999886 78999999999999999999999642 23457899999999999999997
Q ss_pred cCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCC
Q 009435 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~ 262 (535)
++|.+|..|++++++++|||+||.+.....++++++||+.+++|+.+.. +|.+|..|+++.++++|||+||...
T Consensus 144 ---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~ 217 (318)
T 2woz_A 144 ---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIHKGKIVIAGGVTE 217 (318)
T ss_dssp ---CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEEET
T ss_pred ---CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC---CCCCcccceEEEECCEEEEEcCcCC
Confidence 6788999999999999999999986666678999999999999999976 8899999999999999999999875
Q ss_pred CCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC--------CCccCcEEEEeccccc
Q 009435 263 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVN 334 (535)
Q Consensus 263 ~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~dv~~l~~~~~~ 334 (535)
. ...+++++||+++++|+.+..+ |.+|..|+++.+ +++|||+||.+.. ...++|+|.+++....
T Consensus 218 ~-~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 218 D-GLSASVEAFDLKTNKWEVMTEF---PQERSSISLVSL----AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp T-EEEEEEEEEETTTCCEEECCCC---SSCCBSCEEEEE----TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred C-CccceEEEEECCCCeEEECCCC---CCcccceEEEEE----CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 3 3578999999999999998654 778988876654 7899999998753 1357899999999888
Q ss_pred cccc
Q 009435 335 ERKL 338 (535)
Q Consensus 335 ~~~~ 338 (535)
|..+
T Consensus 290 W~~~ 293 (318)
T 2woz_A 290 WAGM 293 (318)
T ss_dssp EEEE
T ss_pred ehhh
Confidence 8665
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1e-39 Score=331.41 Aligned_cols=259 Identities=21% Similarity=0.337 Sum_probs=221.7
Q ss_pred CCCCcccccceEEEEcCCCEEEEECCcCCC-----CCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEE
Q 009435 26 SSGPGKRWGHTCNAIKGGRFLYVFGGYGKD-----NCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVF 100 (535)
Q Consensus 26 g~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~-----~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~ 100 (535)
.+.|.+|.+|+++++ +++|||+||.... ....+++++||+.+++|..++ ++|.+|..|+++.++++|||+
T Consensus 41 ~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~ 115 (318)
T 2woz_A 41 LAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVV 115 (318)
T ss_dssp ECTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEE
T ss_pred CCccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEE
Confidence 345678999988776 5679999996321 123456999999999999965 889999999999999999999
Q ss_pred cCCC--CCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE
Q 009435 101 GGTD--GMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (535)
Q Consensus 101 GG~~--~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W 178 (535)
||.+ +...++++++||+.+++|+++. ++|.+|.+|+++.++++|||+||... .....+++++||+.+++|
T Consensus 116 GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 116 AGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGGKTD-----DKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEEECCEES-----SSCBCCCEEEEETTTTEE
T ss_pred cCccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEEEcCCCC-----CCCccceEEEEcCCCCEE
Confidence 9986 4557799999999999999987 78999999999999999999999632 234678999999999999
Q ss_pred EEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEe
Q 009435 179 KRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFG 258 (535)
Q Consensus 179 ~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~G 258 (535)
+.+. ++|.+|..|++++++++|||+||.+... ..+++++||+++++|+.+.. +|.+|..|+++.++++|||+|
T Consensus 188 ~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~G 260 (318)
T 2woz_A 188 KDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVMTE---FPQERSSISLVSLAGSLYAIG 260 (318)
T ss_dssp EEEC---CCSSCCBSCEEEEETTEEEEEEEEETTE-EEEEEEEEETTTCCEEECCC---CSSCCBSCEEEEETTEEEEEC
T ss_pred EECC---CCCCCcccceEEEECCEEEEEcCcCCCC-ccceEEEEECCCCeEEECCC---CCCcccceEEEEECCEEEEEC
Confidence 9997 6789999999999999999999987654 67899999999999999976 888999999999999999999
Q ss_pred ccCCC--------CCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEc
Q 009435 259 GFTDS--------QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (535)
Q Consensus 259 G~~~~--------~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (535)
|.... ....+++|+||+++++|+.+ .|.+|+.|+++++ +++|||+.
T Consensus 261 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~----~~~iyi~~ 314 (318)
T 2woz_A 261 GFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEIRYASGASCL----ATRLNLFK 314 (318)
T ss_dssp CBCCBC----CCBCCBCCCEEEEETTTTEEEEE-----ESCCGGGTTCEEE----EEEEEGGG
T ss_pred CeeccCCCCceeccceeeeEEEEeCCCCEehhh-----cccccccccceee----CCEEEEEE
Confidence 98642 13478999999999999999 3678888887766 68888763
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=2e-37 Score=347.01 Aligned_cols=283 Identities=17% Similarity=0.195 Sum_probs=230.5
Q ss_pred CCCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeec---cCCCCCCCCceEEEEE--CCEEEEEc
Q 009435 27 SGPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVI---KGSPPTPRDSHSCTTV--GENLYVFG 101 (535)
Q Consensus 27 ~~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~---~g~~P~~R~~hs~~~~--~~~Iyv~G 101 (535)
..|.+|++|+++ + +++|||+||.+. ...+++++||+.+++|..+.. .+.+|.+|.+|+++.+ +++|||+|
T Consensus 384 ~~p~rr~g~~~~-~--~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~G 458 (695)
T 2zwa_A 384 CPINRKFGDVDV-A--GNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIG 458 (695)
T ss_dssp CTTCCBSCEEEE-C--SSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEEC
T ss_pred CCCCCceeEEEE-E--CCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEc
Confidence 356678776654 4 567999999876 467899999999999999872 3568999999999999 99999999
Q ss_pred CCCCCC-CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE
Q 009435 102 GTDGMN-PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (535)
Q Consensus 102 G~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~ 179 (535)
|.+... .++++|+||+.+++|+.+. ++|.+|.+|+++++ +++||||||.... . ++++||+.+++|+
T Consensus 459 G~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~------~---~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 459 GRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEG------P---AMLLYNVTEEIFK 526 (695)
T ss_dssp CBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSS------C---SEEEEETTTTEEE
T ss_pred CCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCC------C---CEEEEECCCCceE
Confidence 987654 7899999999999999986 79999999999997 9999999996422 1 8999999999999
Q ss_pred EeccCCCCCCCCCceeEEeeC---CEEEEEecCCCCC-cccCceEEEECCCCc------EEEeecCCCCCCCceeeEEEE
Q 009435 180 RATTSGNPPSARDSHTCSSWK---NKIIVIGGEDGHD-YYLSDVHILDTDTLT------WKELNTSGMVLSPRAGHSTVA 249 (535)
Q Consensus 180 ~~~~~~~~p~~r~~~s~~~~~---~~lyv~GG~~~~~-~~~~~i~~yd~~t~~------W~~v~~~g~~p~~R~~hs~v~ 249 (535)
.+.+.+.+|.+|..|++++++ ++|||+||....+ ..++++++||+.+++ |+.+.. .++.+|.+|+++.
T Consensus 527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKY 604 (695)
T ss_dssp ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEE
T ss_pred EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEE
Confidence 999877789999999988876 8999999986543 578999999999999 898876 2357899999999
Q ss_pred EC-CEEEEEeccCCCC--CccCcEEEEecCCCcEEEEeeCCC----CCCCceeeeeeeecccCCCEEEEEcccC---CCC
Q 009435 250 FG-KNLFVFGGFTDSQ--NLYDDLYMIDVDSGLWTKVITTGE----GPSARFSVAGDCLDPLKGGVLVFIGGCN---KSL 319 (535)
Q Consensus 250 ~~-~~iyv~GG~~~~~--~~~~dv~~yd~~~~~W~~l~~~~~----~p~~r~~~~~~~~~~~~~~~l~v~GG~~---~~~ 319 (535)
++ ++|||+||..... ...+++++||+.+++|+.+..... .+..+.+|+++.+ .+++|||+||.. ..+
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~---~~g~i~v~GGg~~cfsfG 681 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVST---SMGTIHIIGGGATCYGFG 681 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC------CEEEECCEEECTTSC
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEe---CCCEEEEEeCCccCcCcc
Confidence 99 9999999986543 368999999999999996532211 0124555665443 455899999964 334
Q ss_pred CccCcEEEEecc
Q 009435 320 EALDDMYYLYTG 331 (535)
Q Consensus 320 ~~~~dv~~l~~~ 331 (535)
..++++|.|++.
T Consensus 682 t~~n~i~~ldl~ 693 (695)
T 2zwa_A 682 SVTNVGLKLIAI 693 (695)
T ss_dssp EEECCCEEEEEC
T ss_pred ccccceEEEEEE
Confidence 567899999865
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3.4e-35 Score=302.54 Aligned_cols=248 Identities=20% Similarity=0.273 Sum_probs=199.3
Q ss_pred cccccCCCC-cccccceEEEEcCCCEEEEECCc-C---CCCCCcceEEEEEcCCCeEEEeeccCCC-CCCCCceEEEEEC
Q 009435 21 SSEISSSGP-GKRWGHTCNAIKGGRFLYVFGGY-G---KDNCQTNQVHVFDTVNQTWSQPVIKGSP-PTPRDSHSCTTVG 94 (535)
Q Consensus 21 ~~~~~g~~P-~~R~gh~~~~v~~~~~Iyi~GG~-~---~~~~~~~~~~~yd~~t~~W~~l~~~g~~-P~~R~~hs~~~~~ 94 (535)
|..++ ++| .+|.+|+++++ +++|||+||. . ......+++++||+.+++|++++ ++ |.+|.+|+++.++
T Consensus 45 W~~~~-~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~p~~r~~~~~~~~~ 118 (357)
T 2uvk_A 45 WTALA-AFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLM---SHAPMGMAGHVTFVHN 118 (357)
T ss_dssp EEECC-CCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECS---CCCSSCCSSEEEEEET
T ss_pred eeECC-CCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECC---CCCCcccccceEEEEC
Confidence 34443 366 79999999999 6689999998 2 22345789999999999999976 34 5999999999999
Q ss_pred CEEEEEcCCCCC----------------------------------CCCCcEEEEECCCCeEEeccccCCCCCCCC-CeE
Q 009435 95 ENLYVFGGTDGM----------------------------------NPLRDLHILDTSSHTWISPSVRGEGPEARE-GHS 139 (535)
Q Consensus 95 ~~Iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~-~hs 139 (535)
++|||+||.+.. ..++++++||+.+++|+.+. ++|.+|. +|+
T Consensus 119 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~ 195 (357)
T 2uvk_A 119 GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAA 195 (357)
T ss_dssp TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCE
T ss_pred CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCccccc
Confidence 999999998653 25689999999999999986 6776655 499
Q ss_pred EEEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC--CCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCC-----
Q 009435 140 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT--ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH----- 212 (535)
Q Consensus 140 ~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~--~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~----- 212 (535)
++.++++||||||... .....+++++||+ .+++|+.+... +.|..|..|++++++++|||+||.+..
T Consensus 196 ~~~~~~~iyv~GG~~~-----~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 269 (357)
T 2uvk_A 196 VVNKGDKTWLINGEAK-----PGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSREN 269 (357)
T ss_dssp EEEETTEEEEECCEEE-----TTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHH
T ss_pred EEEECCEEEEEeeecC-----CCcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCccc
Confidence 9999999999999642 2346788999987 89999999754 345557788899999999999996432
Q ss_pred -----------CcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 213 -----------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 213 -----------~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
...++++++||+++++|+.+.. +|.+|..|+++.++++|||+||.+.....++++++|++++++|.
T Consensus 270 ~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 270 YQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp HHTTCSSTTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred ccccceeccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 1234689999999999999976 88999999999999999999999876667899999999999999
Q ss_pred EEeeC
Q 009435 282 KVITT 286 (535)
Q Consensus 282 ~l~~~ 286 (535)
.+.+.
T Consensus 347 ~~~~~ 351 (357)
T 2uvk_A 347 VQNLE 351 (357)
T ss_dssp EEC--
T ss_pred eeecc
Confidence 88654
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.98 E-value=4.8e-31 Score=295.42 Aligned_cols=240 Identities=15% Similarity=0.230 Sum_probs=204.0
Q ss_pred CCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEecc-c--cCCCCCCCCCeEEEEE--CCEEEEEcCC
Q 009435 79 GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPS-V--RGEGPEAREGHSAALV--GKRLFIFGGC 153 (535)
Q Consensus 79 g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~-~--~g~~p~~r~~hs~~~~--~~~lyv~GG~ 153 (535)
+..|..|.+|+++ ++++|||+||.+. ..++++++||+.+++|+.+. . .+.+|.+|.+|+++.+ +++|||+||+
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~ 460 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGR 460 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCB
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCC
Confidence 3566667765554 8999999999987 78899999999999999887 3 2468999999999999 9999999997
Q ss_pred CCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 009435 154 GKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (535)
Q Consensus 154 ~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v 232 (535)
... ...++++++||+.+++|+.+. ++|.+|..|+++++ +++|||+||.+... ++++||+.+++|+.+
T Consensus 461 ~~~-----~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 461 KAP-----HQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDV 528 (695)
T ss_dssp SST-----TCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEEC
T ss_pred CCC-----CCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEc
Confidence 432 236799999999999999996 67899999999996 99999999987654 899999999999999
Q ss_pred ecCCCCCCCceeeEEEEEC---CEEEEEeccCCCC-CccCcEEEEecCCCc------EEEEeeCCCCCCCceeeeeeeec
Q 009435 233 NTSGMVLSPRAGHSTVAFG---KNLFVFGGFTDSQ-NLYDDLYMIDVDSGL------WTKVITTGEGPSARFSVAGDCLD 302 (535)
Q Consensus 233 ~~~g~~p~~R~~hs~v~~~---~~iyv~GG~~~~~-~~~~dv~~yd~~~~~------W~~l~~~~~~p~~r~~~~~~~~~ 302 (535)
...+.+|.+|.+|+++.++ ++|||+||....+ ..++++|+||+.+++ |+.+..+ .+.+|+.|+++.+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~- 605 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYI- 605 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEE-
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEe-
Confidence 9877788999999988776 8999999986554 678999999999999 8998774 2578988887665
Q ss_pred ccCCCEEEEEcccCCCC--CccCcEEEEecccccccc
Q 009435 303 PLKGGVLVFIGGCNKSL--EALDDMYYLYTGLVNERK 337 (535)
Q Consensus 303 ~~~~~~l~v~GG~~~~~--~~~~dv~~l~~~~~~~~~ 337 (535)
.+++|||+||++... ...++++.+++....|..
T Consensus 606 --~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 606 --TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS 640 (695)
T ss_dssp --ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred --CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence 238999999987654 368999999999888873
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=2e-30 Score=288.86 Aligned_cols=268 Identities=17% Similarity=0.160 Sum_probs=206.5
Q ss_pred CCcccccceEEEEcCCCEEEEECCcCCCC-----CCcceEEEEEcCCCeEEEeeccCCCCCCCCceE--EE-EECCEEEE
Q 009435 28 GPGKRWGHTCNAIKGGRFLYVFGGYGKDN-----CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHS--CT-TVGENLYV 99 (535)
Q Consensus 28 ~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~-----~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs--~~-~~~~~Iyv 99 (535)
.|.||.+|+++++..+++||++||.+... ...+.+++||+.+++|+.+. .+|.+|..|+ ++ ..+++||+
T Consensus 182 ~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv 258 (656)
T 1k3i_A 182 IDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVV 258 (656)
T ss_dssp EECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEE
T ss_pred ccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc---ccCCCCCCccccccCCCCCCEEE
Confidence 45677888888886456899999986532 13457999999999999876 5666776553 33 35899999
Q ss_pred EcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE
Q 009435 100 FGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (535)
Q Consensus 100 ~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W 178 (535)
+||.+.. ++++||+.+++|+++. ++|.+|..|+++.+ +++|||+||... .....+++++||+.+++|
T Consensus 259 ~GG~~~~----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~-----~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 259 TGGNDAK----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWS-----GGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp ECSSSTT----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCC-----SSSCCCCEEEEETTTTEE
T ss_pred eCCCCCC----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCccc-----CCcccccceEeCCCCCcc
Confidence 9997643 7999999999999886 79999999999999 999999999522 223578899999999999
Q ss_pred EEeccCC--CCCC---------------------------------------------------------CCCceeEEe-
Q 009435 179 KRATTSG--NPPS---------------------------------------------------------ARDSHTCSS- 198 (535)
Q Consensus 179 ~~~~~~~--~~p~---------------------------------------------------------~r~~~s~~~- 198 (535)
+.+...+ +++. ++..++++.
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence 9973211 1111 122344443
Q ss_pred --eCCEEEEEecCCC--CCcccC---ceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCC-----CC
Q 009435 199 --WKNKIIVIGGEDG--HDYYLS---DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDS-----QN 265 (535)
Q Consensus 199 --~~~~lyv~GG~~~--~~~~~~---~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~-----~~ 265 (535)
.+++|||+||.+. ....++ .+++||+.+++|..+. .+.+|.+|..|+++.+ +++|||+||.... ..
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 4899999999743 122344 7899999999999986 2348899999998888 9999999997532 24
Q ss_pred ccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccC
Q 009435 266 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 316 (535)
Q Consensus 266 ~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (535)
..+++++||+.+++|+.+..+ |.+|..|+++++ ..+++|||+||..
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~---~~~R~~hs~a~l--l~dg~v~v~GG~~ 531 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPN---SIVRVYHSISLL--LPDGRVFNGGGGL 531 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCC---SSCCCTTEEEEE--CTTSCEEEEECCC
T ss_pred cccceEEEcCCCCceeecCCC---CCccccccHhhc--CCCcEEEecCCCC
Confidence 578999999999999987654 788999987665 4688999999954
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.94 E-value=6.9e-26 Score=252.31 Aligned_cols=253 Identities=11% Similarity=0.121 Sum_probs=189.3
Q ss_pred EEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCC------CCCcEEEEECCCCeEEeccccCCCCC
Q 009435 62 VHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMN------PLRDLHILDTSSHTWISPSVRGEGPE 133 (535)
Q Consensus 62 ~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~------~~~~~~~yd~~t~~W~~~~~~g~~p~ 133 (535)
+..||+.+++|..+. ++ ||..++++++ +++||++||.+... ..+++++||+.+++|+.+. .+|.
T Consensus 168 ~~~~dp~~~~W~~~~---~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~---~~~~ 239 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTI---DL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTVT 239 (656)
T ss_dssp CCCCCTTSCEEEEEE---EC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE---EEEC
T ss_pred cccCCCCCCeeeeec---cC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc---ccCC
Confidence 345677899999865 33 4566677766 99999999986532 2357999999999999876 4566
Q ss_pred CCCCeE--EE-EECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecC
Q 009435 134 AREGHS--AA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGE 209 (535)
Q Consensus 134 ~r~~hs--~~-~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~ 209 (535)
+|..|+ ++ ..+++||++||+.. .++++||+.+++|+++. ++|.+|..|+++++ +++|||+||.
T Consensus 240 ~~~~~~~~~~~~~~g~lyv~GG~~~----------~~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~ 306 (656)
T 1k3i_A 240 KHDMFCPGISMDGNGQIVVTGGNDA----------KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGS 306 (656)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSST----------TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCC
T ss_pred CCCCccccccCCCCCCEEEeCCCCC----------CceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCc
Confidence 665553 34 35799999999632 27999999999999986 67899999999999 9999999996
Q ss_pred CCCCcccCceEEEECCCCcEEEeecCCC--CCC-----------------------------------------------
Q 009435 210 DGHDYYLSDVHILDTDTLTWKELNTSGM--VLS----------------------------------------------- 240 (535)
Q Consensus 210 ~~~~~~~~~i~~yd~~t~~W~~v~~~g~--~p~----------------------------------------------- 240 (535)
......++++++||+.+++|+.+...+. ++.
T Consensus 307 ~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~ 386 (656)
T 1k3i_A 307 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG 386 (656)
T ss_dssp CCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred ccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC
Confidence 4444478899999999999999732110 110
Q ss_pred ----------CceeeEEEE---ECCEEEEEeccCC--CCCccC---cEEEEecCCCcEEEEeeCCCCCCCceeeeeeeec
Q 009435 241 ----------PRAGHSTVA---FGKNLFVFGGFTD--SQNLYD---DLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 302 (535)
Q Consensus 241 ----------~R~~hs~v~---~~~~iyv~GG~~~--~~~~~~---dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~ 302 (535)
++..++++. .+++|||+||... ....++ .+++||+.+++|..+. .+..|.+|..|+++++
T Consensus 387 ~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l- 464 (656)
T 1k3i_A 387 KRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVL- 464 (656)
T ss_dssp ECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEEC-
T ss_pred ccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEEC-
Confidence 122344443 4899999999743 222344 7899999999999986 2345888988886654
Q ss_pred ccCCCEEEEEcccCCC-----CCccCcEEEEecccccccccc
Q 009435 303 PLKGGVLVFIGGCNKS-----LEALDDMYYLYTGLVNERKLE 339 (535)
Q Consensus 303 ~~~~~~l~v~GG~~~~-----~~~~~dv~~l~~~~~~~~~~~ 339 (535)
.+++|||+||.+.. ...+++++.++....+|..+.
T Consensus 465 --~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 465 --PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp --TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred --CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 58999999998643 245788999998877776543
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.97 E-value=0.0023 Score=61.33 Aligned_cols=204 Identities=15% Similarity=0.092 Sum_probs=127.4
Q ss_pred CCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCcee
Q 009435 85 RDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY 164 (535)
Q Consensus 85 R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~ 164 (535)
-.-++....++.+|+-.|..+. +.+.++|+.+++-.... +++..-++.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~----------- 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR----------- 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----------
T ss_pred cccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee-----------
Confidence 3445777889999999987543 46899999998765433 456666778888999999998663
Q ss_pred eeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCC-ce
Q 009435 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP-RA 243 (535)
Q Consensus 165 ~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~-R~ 243 (535)
.+.+++||+.+.+-..--. .+..+.+++..+++||+.-| .+.++.+|+++.+-..--..+.-+.+ +.
T Consensus 84 ~~~v~v~D~~tl~~~~ti~-----~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFR-----YPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp SSEEEEEETTTTEEEEEEE-----CSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred CCEEEEEECCcCcEEEEEe-----CCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 4779999998876443221 12245667766788888754 24699999999765432221111112 22
Q ss_pred eeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCC-CCC------Cc-eeeeeeeecccCCCEEEEEccc
Q 009435 244 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGE-GPS------AR-FSVAGDCLDPLKGGVLVFIGGC 315 (535)
Q Consensus 244 ~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~-~p~------~r-~~~~~~~~~~~~~~~l~v~GG~ 315 (535)
.--+...+++||+---. .++|.+.|+++++-...-.+.. .|. +. ...-+..++ ..+++|||.|-.
T Consensus 152 lNeLe~~~G~lyanvw~------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d-~~~~~lfVTGK~ 224 (243)
T 3mbr_X 152 LNELEWVNGELLANVWL------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD-AEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEEETTEEEEEETT------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE-TTTTEEEEEETT
T ss_pred ceeeEEeCCEEEEEECC------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc-CCCCEEEEECCC
Confidence 22345568898854322 4679999999987554433221 111 11 122222232 456889988833
Q ss_pred CCCCCccCcEEEEec
Q 009435 316 NKSLEALDDMYYLYT 330 (535)
Q Consensus 316 ~~~~~~~~dv~~l~~ 330 (535)
-..+|.+..
T Consensus 225 ------wp~~~~v~~ 233 (243)
T 3mbr_X 225 ------WPMLYEIRL 233 (243)
T ss_dssp ------CSEEEEEEE
T ss_pred ------CCcEEEEEE
Confidence 345665543
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.84 E-value=0.0059 Score=60.87 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=135.7
Q ss_pred ccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEE-eeccCCCCCCCCceEEEE-ECCEEEEEcCCCCCCC
Q 009435 31 KRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNP 108 (535)
Q Consensus 31 ~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~~R~~hs~~~-~~~~Iyv~GG~~~~~~ 108 (535)
....+..+.. ++++|+.... .+.+.++|+.+.+-.. ++ . ...-+..+. -++++|+....
T Consensus 43 g~~~~~i~~~--~~~lyv~~~~------~~~v~viD~~t~~~~~~i~---~---~~~p~~i~~~~~g~lyv~~~~----- 103 (328)
T 3dsm_A 43 GDVAQSMVIR--DGIGWIVVNN------SHVIFAIDINTFKEVGRIT---G---FTSPRYIHFLSDEKAYVTQIW----- 103 (328)
T ss_dssp BSCEEEEEEE--TTEEEEEEGG------GTEEEEEETTTCCEEEEEE---C---CSSEEEEEEEETTEEEEEEBS-----
T ss_pred CccceEEEEE--CCEEEEEEcC------CCEEEEEECcccEEEEEcC---C---CCCCcEEEEeCCCeEEEEECC-----
Confidence 3334455443 5679987642 2579999999887633 32 1 122234444 67899998743
Q ss_pred CCcEEEEECCCCeEEeccccCCCC-CCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCC
Q 009435 109 LRDLHILDTSSHTWISPSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (535)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~ 187 (535)
.+.+.++|+.+.+-...-..+... ....-+.++..++++||..- + ..+.+.++|+.+.+....-..+..
T Consensus 104 ~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-~---------~~~~v~viD~~t~~~~~~i~~g~~ 173 (328)
T 3dsm_A 104 DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW-S---------YQNRILKIDTETDKVVDELTIGIQ 173 (328)
T ss_dssp CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC-T---------TCCEEEEEETTTTEEEEEEECSSC
T ss_pred CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC-C---------CCCEEEEEECCCCeEEEEEEcCCC
Confidence 367999999998754322112200 00022344457889999842 0 135789999998876543322222
Q ss_pred CCCCCceeEEe-eCCEEEEEecCCCCCcc----cCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEecc
Q 009435 188 PSARDSHTCSS-WKNKIIVIGGEDGHDYY----LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGF 260 (535)
Q Consensus 188 p~~r~~~s~~~-~~~~lyv~GG~~~~~~~----~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~ 260 (535)
| +.++. -++++|+....+..... .+.++++|+++.+....-. .+....-..++.. ++.+|+..+
T Consensus 174 p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---~~~g~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 174 P-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---FKLGDWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp B-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---CCTTCCCEEEEECTTSCEEEEESS-
T ss_pred c-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---cCCCCCceeEEEecCCCEEEEEcc-
Confidence 2 22332 36788877543211111 3679999999987664322 2222222334444 567888654
Q ss_pred CCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEecc
Q 009435 261 TDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (535)
Q Consensus 261 ~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (535)
.++++|+++.+....... +.......+.+++ ..++.|||....+.. .-+.++.++..
T Consensus 245 --------~v~~~d~~t~~~~~~~~~---~~~~~~p~gi~vd-p~~g~lyva~~~~y~--~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 --------DIWRMPVEADRVPVRPFL---EFRDTKYYGLTVN-PNNGEVYVADAIDYQ--QQGIVYRYSPQ 301 (328)
T ss_dssp --------SEEEEETTCSSCCSSCSB---CCCSSCEEEEEEC-TTTCCEEEEECTTSS--SEEEEEEECTT
T ss_pred --------EEEEEECCCCceeeeeee---cCCCCceEEEEEc-CCCCeEEEEcccccc--cCCEEEEECCC
Confidence 599999988765211111 1101111222332 237889988622111 12356777654
No 21
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.79 E-value=0.0063 Score=58.26 Aligned_cols=182 Identities=13% Similarity=0.033 Sum_probs=116.4
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
++.+|+-.|.... +.+.++|+.+++=..-. .+|..-.+.+++..+++||+.... .+.+++||..|.+-
T Consensus 30 ~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 30 RGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYDLATLTP 97 (243)
T ss_dssp TTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTTEE
T ss_pred CCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEECCcCcE
Confidence 4689998886543 57999999998766522 445555677888899999999653 36899999998765
Q ss_pred EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE-EeccCCCCCCCC-CceeEEeeC
Q 009435 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSAR-DSHTCSSWK 200 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~-~~~~~~~~p~~r-~~~s~~~~~ 200 (535)
..- .+.+..+.+++..+++||+--| .+.++.+|+.+.+-. .+... ..+.+. .--.+...+
T Consensus 98 ~~t-----i~~~~~Gwglt~dg~~L~vSdg------------s~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~~ 159 (243)
T 3mbr_X 98 RAR-----FRYPGEGWALTSDDSHLYMSDG------------TAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWVN 159 (243)
T ss_dssp EEE-----EECSSCCCEEEECSSCEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEET
T ss_pred EEE-----EeCCCCceEEeeCCCEEEEECC------------CCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEeC
Confidence 431 1222356778877888999866 467999999987643 33322 122221 112344458
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeec-CCCCC--------CCceeeEEEEE--CCEEEEEecc
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT-SGMVL--------SPRAGHSTVAF--GKNLFVFGGF 260 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~-~g~~p--------~~R~~hs~v~~--~~~iyv~GG~ 260 (535)
++||+--- ..++|.+.|+++++-...-. .+..+ ..-.-..++.. ++++||.|-.
T Consensus 160 G~lyanvw------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 160 GELLANVW------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TEEEEEET------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEC------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 88885432 24679999999987544322 11111 11123344544 4789998864
No 22
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.73 E-value=0.019 Score=57.13 Aligned_cols=231 Identities=10% Similarity=0.051 Sum_probs=132.4
Q ss_pred cceEEEEEcCCCeEEEeecc--CCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEe-ccccCCCCCCC
Q 009435 59 TNQVHVFDTVNQTWSQPVIK--GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS-PSVRGEGPEAR 135 (535)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~--g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~r 135 (535)
.+.+..||+.++++..--.. ...+.....+.++..++++|+.... .+.+.++|+.+.+-.. ++ ....
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~---~~~~-- 85 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRIT---GFTS-- 85 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEE---CCSS--
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcC---CCCC--
Confidence 36799999999988652100 1223334456677789999999752 3579999999887532 32 1122
Q ss_pred CCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC-CCCCceeEEeeCCEEEEEecCCCCC
Q 009435 136 EGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP-SARDSHTCSSWKNKIIVIGGEDGHD 213 (535)
Q Consensus 136 ~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p-~~r~~~s~~~~~~~lyv~GG~~~~~ 213 (535)
-+.++. .++++|+.... .+.+.++|+.+.+-...-..+... ....-..++..++++||..-.
T Consensus 86 -p~~i~~~~~g~lyv~~~~-----------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~---- 149 (328)
T 3dsm_A 86 -PRYIHFLSDEKAYVTQIW-----------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS---- 149 (328)
T ss_dssp -EEEEEEEETTEEEEEEBS-----------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT----
T ss_pred -CcEEEEeCCCeEEEEECC-----------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC----
Confidence 233444 67899998642 367899999988755322112200 000223444478999998421
Q ss_pred cccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCc----cCcEEEEecCCCcEEEEeeCCCC
Q 009435 214 YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL----YDDLYMIDVDSGLWTKVITTGEG 289 (535)
Q Consensus 214 ~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~----~~dv~~yd~~~~~W~~l~~~~~~ 289 (535)
..+.+.++|+++.+....-..+..| . ..++.-++++|+.......... .+.|+++|+++.+....-..+..
T Consensus 150 -~~~~v~viD~~t~~~~~~i~~g~~p--~--~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 150 -YQNRILKIDTETDKVVDELTIGIQP--T--SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp -TCCEEEEEETTTTEEEEEEECSSCB--C--CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred -CCCEEEEEECCCCeEEEEEEcCCCc--c--ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 1346999999998765543322222 1 1122235788777543211111 36799999998876643333211
Q ss_pred CCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccc
Q 009435 290 PSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 334 (535)
Q Consensus 290 p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~ 334 (535)
..++ ..++. ..++.||+..+ .++.+++....
T Consensus 225 ~~p~----~la~~-~d~~~lyv~~~---------~v~~~d~~t~~ 255 (328)
T 3dsm_A 225 DWPS----EVQLN-GTRDTLYWINN---------DIWRMPVEADR 255 (328)
T ss_dssp CCCE----EEEEC-TTSCEEEEESS---------SEEEEETTCSS
T ss_pred CCce----eEEEe-cCCCEEEEEcc---------EEEEEECCCCc
Confidence 1122 22221 34678888643 58888865433
No 23
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.61 E-value=0.0079 Score=58.15 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=120.9
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeee
Q 009435 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYND 167 (535)
Q Consensus 88 hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~ 167 (535)
.+....++.+|+..|..+. +.+.++|+.|++-.... +++..-++.+++..+++||+.... .+.
T Consensus 46 qGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~-----------~~~ 108 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK-----------NGL 108 (262)
T ss_dssp EEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----------SSE
T ss_pred ceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee-----------CCE
Confidence 4556668999999986542 46899999998765433 344445667788889999998662 467
Q ss_pred EEEEECCCccEEE-eccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCC-ceee
Q 009435 168 LYILNTETFVWKR-ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP-RAGH 245 (535)
Q Consensus 168 v~~yd~~t~~W~~-~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~-R~~h 245 (535)
+++||+++.+-.. ++. +..+.+++..++.||+.-| .+.++.+|+++.+-..--..+.-..+ +.--
T Consensus 109 v~v~D~~t~~~~~ti~~------~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNY------DGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEEETTTCCEEEEEEC------SSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEECccCcEEEEEEC------CCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 9999998876443 331 2245566666777888644 24699999998764433221100111 1111
Q ss_pred EEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCC-CC------CceeeeeeeecccCCCEEEEEcccCCC
Q 009435 246 STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEG-PS------ARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 246 s~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~-p~------~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
.+...+++||+-- + ..++|.+.|+++++-...-..... |. .-...-+.++. ...+++||.|-.
T Consensus 176 ELe~~~G~lyan~-w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d-p~~~~lfVTGK~--- 245 (262)
T 3nol_A 176 ELEWVDGEIFANV-W-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD-KEHHRLFVTGKL--- 245 (262)
T ss_dssp EEEEETTEEEEEE-T-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE-TTTTEEEEEETT---
T ss_pred eeEEECCEEEEEE-c-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc-CCCCEEEEECCC---
Confidence 2444588888633 2 246799999999976554443211 11 11122233332 456788888833
Q ss_pred CCccCcEEEEe
Q 009435 319 LEALDDMYYLY 329 (535)
Q Consensus 319 ~~~~~dv~~l~ 329 (535)
-..+|.+.
T Consensus 246 ---Wp~~~ev~ 253 (262)
T 3nol_A 246 ---WPKVFEIT 253 (262)
T ss_dssp ---CSEEEEEE
T ss_pred ---CCceEEEE
Confidence 33456554
No 24
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.44 E-value=0.018 Score=55.58 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=115.0
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
....+. ++.+|+-.|.... +.+.++|+.+++=..-. .++..-.+.+.+..+++||+.... -+.+++|
T Consensus 46 qGL~~~-~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~ 112 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGR----SSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK-----NGLGFVW 112 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTE----EEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----SSEEEEE
T ss_pred ceEEEE-CCEEEEECCCCCC----ceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee-----CCEEEEE
Confidence 333444 4589998886532 57899999998755422 334444566788889999999653 3689999
Q ss_pred ECCCCeEEe-ccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE-EeccCCCCCCCCCc
Q 009435 116 DTSSHTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSARDS 193 (535)
Q Consensus 116 d~~t~~W~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~-~~~~~~~~p~~r~~ 193 (535)
|+.|.+-.. ++ .+-.+.+++..++.||+.-| .+.++.+|+.+.+-. .+... ..+.+...
T Consensus 113 D~~t~~~~~ti~------~~~eG~glt~dg~~L~~SdG------------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~ 173 (262)
T 3nol_A 113 NIRNLRQVRSFN------YDGEGWGLTHNDQYLIMSDG------------TPVLRFLDPESLTPVRTITVT-AHGEELPE 173 (262)
T ss_dssp ETTTCCEEEEEE------CSSCCCCEEECSSCEEECCS------------SSEEEEECTTTCSEEEEEECE-ETTEECCC
T ss_pred ECccCcEEEEEE------CCCCceEEecCCCEEEEECC------------CCeEEEEcCCCCeEEEEEEec-cCCccccc
Confidence 999876532 22 22266677777788998765 367999999986543 33321 11111111
Q ss_pred -eeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecC-CCCC-------CCceeeEEEEE--CCEEEEEecc
Q 009435 194 -HTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMVL-------SPRAGHSTVAF--GKNLFVFGGF 260 (535)
Q Consensus 194 -~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~-g~~p-------~~R~~hs~v~~--~~~iyv~GG~ 260 (535)
-.+...+++||+--- ..+.|.+.|+++++-...-.. +..+ ..-.-..++.. ++++||.|-.
T Consensus 174 lNELe~~~G~lyan~w------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 174 LNELEWVDGEIFANVW------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEEETTEEEEEET------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEECCEEEEEEc------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 023344888886321 346799999999875443321 1111 11123445554 4789998864
No 25
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.41 E-value=0.11 Score=50.85 Aligned_cols=246 Identities=9% Similarity=0.003 Sum_probs=124.3
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcE
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~ 112 (535)
+..+..++++.+|+....+........++++|..+.+....-..+.. -++++.. ++.+|+.+..+ ..+
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~-----~~v 113 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-----PFGATINNTTQTLWFGNTVN-----SAV 113 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-----CCSEEEETTTTEEEEEETTT-----TEE
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-----cceEEECCCCCEEEEEecCC-----CEE
Confidence 34455567778888764322211246799999988765442211111 2233333 34588876543 479
Q ss_pred EEEECCCCeEEeccccCCCCC-----CCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEecc-C
Q 009435 113 HILDTSSHTWISPSVRGEGPE-----AREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT-S 184 (535)
Q Consensus 113 ~~yd~~t~~W~~~~~~g~~p~-----~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~-~ 184 (535)
+++|+.+.+-...-..+.... +..-+.++.. ++.+|+.+... ...++++|+.+.+-...-. .
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEECCC
T ss_pred EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEecCC
Confidence 999998876432211111111 1111333333 34677766210 2458999998776544321 1
Q ss_pred CCCCCCCCceeEEe--eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEecc
Q 009435 185 GNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGF 260 (535)
Q Consensus 185 ~~~p~~r~~~s~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~ 260 (535)
+.. .+.++. -++.+|+... .+.+.+||+.+.+-......+..........++.. ++.+|+....
T Consensus 184 ~~~-----~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 184 GKM-----STGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp CTT-----CCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CCc-----cceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 111 122222 2455666533 24688999988765433321111111122223333 4457665432
Q ss_pred CCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccc
Q 009435 261 TDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 332 (535)
Q Consensus 261 ~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~ 332 (535)
.+.+++||+.+.+.......+. +. ...+. ..++.+|+....+ +.++.+++..
T Consensus 252 ------~~~v~~~d~~~~~~~~~~~~~~---~~----~~~~s-~dg~~l~v~~~~~------~~v~~~d~~~ 303 (353)
T 3vgz_A 252 ------AAEVLVVDTRNGNILAKVAAPE---SL----AVLFN-PARNEAYVTHRQA------GKVSVIDAKS 303 (353)
T ss_dssp ------SSEEEEEETTTCCEEEEEECSS---CC----CEEEE-TTTTEEEEEETTT------TEEEEEETTT
T ss_pred ------CCEEEEEECCCCcEEEEEEcCC---Cc----eEEEC-CCCCEEEEEECCC------CeEEEEECCC
Confidence 2569999998887654444322 11 11221 3455677765433 2466666543
No 26
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.39 E-value=0.066 Score=51.92 Aligned_cols=201 Identities=13% Similarity=0.011 Sum_probs=119.5
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEE
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
|.... ..++.+|+..|... .+.+.++|+.+++=..-. +++....+.+.+..+++||+..-. .+.+++
T Consensus 24 ~Gl~~-~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~v 90 (266)
T 2iwa_A 24 QGLVY-AENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFI 90 (266)
T ss_dssp EEEEE-CSTTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETT-----CSEEEE
T ss_pred ccEEE-eCCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEec-----CCEEEE
Confidence 34444 33358999877422 257999999998755422 223334556778889999999642 367999
Q ss_pred EECCCCeEEe-ccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE-EeccCCCCCCCC-
Q 009435 115 LDTSSHTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSAR- 191 (535)
Q Consensus 115 yd~~t~~W~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~-~~~~~~~~p~~r- 191 (535)
||+.+.+=.. ++ .+ . -.+.+++..++++|+.-| .+.++.+|+.+.+-. .+... ..+.+.
T Consensus 91 iD~~t~~v~~~i~-~g-~---~~g~glt~Dg~~l~vs~g------------s~~l~viD~~t~~v~~~I~Vg-~~~~p~~ 152 (266)
T 2iwa_A 91 YDRRTLSNIKNFT-HQ-M---KDGWGLATDGKILYGSDG------------TSILYEIDPHTFKLIKKHNVK-YNGHRVI 152 (266)
T ss_dssp EETTTTEEEEEEE-CC-S---SSCCEEEECSSSEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECC
T ss_pred EECCCCcEEEEEE-CC-C---CCeEEEEECCCEEEEECC------------CCeEEEEECCCCcEEEEEEEC-CCCcccc
Confidence 9999876432 22 11 1 234556666778998765 467999999986643 33322 111111
Q ss_pred CceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecC-CC--------CCCCceeeEEEEE--CCEEEEEecc
Q 009435 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GM--------VLSPRAGHSTVAF--GKNLFVFGGF 260 (535)
Q Consensus 192 ~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~-g~--------~p~~R~~hs~v~~--~~~iyv~GG~ 260 (535)
.-..+...++++|+--. ..+++.+.|+++++-...-.. +. .+..-.-..++.. ++++||.|+.
T Consensus 153 ~~nele~~dg~lyvn~~------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 153 RLNELEYINGEVWANIW------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp CEEEEEEETTEEEEEET------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEEECCEEEEecC------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 11123334788886532 246799999999864332221 10 0111122444444 4689999886
Q ss_pred CCCCCccCcEEEEecCCC
Q 009435 261 TDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 261 ~~~~~~~~dv~~yd~~~~ 278 (535)
. +.+++.++.+.
T Consensus 227 ~------~~v~~i~l~~~ 238 (266)
T 2iwa_A 227 W------PKLFEIKLHLV 238 (266)
T ss_dssp C------SEEEEEEEEEC
T ss_pred C------CeEEEEEEecc
Confidence 3 45777776553
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.31 E-value=0.014 Score=56.43 Aligned_cols=158 Identities=14% Similarity=0.089 Sum_probs=101.9
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeee
Q 009435 88 HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYND 167 (535)
Q Consensus 88 hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~ 167 (535)
.+....++.||+..|..+. +.++|+.|++-.... ++...++.+++..+++||+.... .+.
T Consensus 58 qGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~-----------~~~ 117 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT-----------EGL 117 (268)
T ss_dssp EEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS-----------SCE
T ss_pred ceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc-----------CCE
Confidence 5667778999999997543 899999987642211 23344566788888999998662 467
Q ss_pred EEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCc-eeeE
Q 009435 168 LYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AGHS 246 (535)
Q Consensus 168 v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R-~~hs 246 (535)
+++||+++.+-..--. .+..+.+++..++.||+.-| .+.++.+|+++.+-..--..+.-+.+. ..--
T Consensus 118 v~V~D~~Tl~~~~ti~-----~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe 185 (268)
T 3nok_A 118 LFTWSGMPPQRERTTR-----YSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINE 185 (268)
T ss_dssp EEEEETTTTEEEEEEE-----CSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEECCcCcEEEEEe-----CCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence 9999998876543221 12235667777889999854 246999999997654422211111111 1122
Q ss_pred EEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 247 TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 247 ~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
+...+++||+-- + ..++|.+.|+++++-...
T Consensus 186 Le~~dG~lyanv-w-----~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 186 LECANGVIYANI-W-----HSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp EEEETTEEEEEE-T-----TCSEEEEECTTTCBEEEE
T ss_pred cEEeCCEEEEEE-C-----CCCeEEEEeCCCCcEEEE
Confidence 445588888532 2 246799999999875443
No 28
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.25 E-value=0.096 Score=50.76 Aligned_cols=204 Identities=12% Similarity=0.004 Sum_probs=119.2
Q ss_pred eEEEEEC-CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeee
Q 009435 88 HSCTTVG-ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYN 166 (535)
Q Consensus 88 hs~~~~~-~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n 166 (535)
++.+..+ +.+|+..|..+ -+.+.++|+.|++-...- +++...++.+++..+++||+..-. .+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~-----------~~ 86 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWL-----------KN 86 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETT-----------CS
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEec-----------CC
Confidence 5666665 79999877422 357999999998765432 233344556778888999998652 46
Q ss_pred eEEEEECCCccEE-EeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCc-ee
Q 009435 167 DLYILNTETFVWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AG 244 (535)
Q Consensus 167 ~v~~yd~~t~~W~-~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R-~~ 244 (535)
.+++||+.+.+-. .++ .+ .| .+..++.-++++|+.-| .+.++.+|+++.+-...-..+..+.+. .-
T Consensus 87 ~v~viD~~t~~v~~~i~-~g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFT-HQ-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp EEEEEETTTTEEEEEEE-CC-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEECCCCcEEEEEE-CC-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 7999999876433 232 12 12 23445555678888743 356999999997644332212111111 11
Q ss_pred eEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCC-CCC-------CCceeeeeeeecccCCCEEEEEcccC
Q 009435 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTG-EGP-------SARFSVAGDCLDPLKGGVLVFIGGCN 316 (535)
Q Consensus 245 hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~-~~p-------~~r~~~~~~~~~~~~~~~l~v~GG~~ 316 (535)
..+...++++|+--.. .++|.+.|+++++-...-..+ ..+ .......+..++ ..++++||.|+..
T Consensus 155 nele~~dg~lyvn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 155 NELEYINGEVWANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD-QENKRIFVTGKLW 227 (266)
T ss_dssp EEEEEETTEEEEEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE-TTTTEEEEEETTC
T ss_pred eeEEEECCEEEEecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc-CCCCEEEEECCCC
Confidence 2333448888865432 467999999998644332221 000 000111222222 3467899988765
Q ss_pred CCCCccCcEEEEecccc
Q 009435 317 KSLEALDDMYYLYTGLV 333 (535)
Q Consensus 317 ~~~~~~~dv~~l~~~~~ 333 (535)
. .++.+++...
T Consensus 228 ~------~v~~i~l~~~ 238 (266)
T 2iwa_A 228 P------KLFEIKLHLV 238 (266)
T ss_dssp S------EEEEEEEEEC
T ss_pred C------eEEEEEEecc
Confidence 4 4777765543
No 29
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.19 E-value=0.1 Score=53.63 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=107.0
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (535)
..+.+||..+.+-...- . .......++..++..++.|+.+ ..+.+||+.+.+-...- ........
T Consensus 219 g~i~~wd~~~~~~~~~~-~----~~~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~-----~~~~~~v~ 283 (445)
T 2ovr_B 219 ATLRVWDIETGQCLHVL-M----GHVAAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLHTL-----QGHTNRVY 283 (445)
T ss_dssp SEEEEEESSSCCEEEEE-E----CCSSCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEEEE-----CCCSSCEE
T ss_pred CEEEEEECCCCcEEEEE-c----CCcccEEEEEECCCEEEEEcCC-----CEEEEEECCCCcEeEEe-----cCCCCceE
Confidence 34667777665433211 1 1112223344466666676654 35788888776543211 11111223
Q ss_pred EEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCce
Q 009435 140 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 219 (535)
Q Consensus 140 ~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i 219 (535)
.+..++..++.|+. ...+.+||+.+.+-...-. .......+...++.+++.|+.++ .+
T Consensus 284 ~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg------~i 341 (445)
T 2ovr_B 284 SLQFDGIHVVSGSL-----------DTSIRVWDVETGNCIHTLT-----GHQSLTSGMELKDNILVSGNADS------TV 341 (445)
T ss_dssp EEEECSSEEEEEET-----------TSCEEEEETTTCCEEEEEC-----CCCSCEEEEEEETTEEEEEETTS------CE
T ss_pred EEEECCCEEEEEeC-----------CCeEEEEECCCCCEEEEEc-----CCcccEEEEEEeCCEEEEEeCCC------eE
Confidence 33346666777763 2457888987765433211 01111223334555677777543 48
Q ss_pred EEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeee
Q 009435 220 HILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD 299 (535)
Q Consensus 220 ~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~ 299 (535)
.+||+.+.+-...-. + .......-.++..++.+++.|+.+ ..|.+||+.+.+....-...............
T Consensus 342 ~vwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 342 KIWDIKTGQCLQTLQ-G-PNKHQSAVTCLQFNKNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp EEEETTTCCEEEEEC-S-TTSCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred EEEECCCCcEEEEEc-c-CCCCCCCEEEEEECCCEEEEEeCC------CeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 899997765333221 0 111122233445567777777753 34899999988754432111111111122222
Q ss_pred eecccCCCEEEEEcccCCC
Q 009435 300 CLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 300 ~~~~~~~~~l~v~GG~~~~ 318 (535)
.+ ..++.+++.|+.+..
T Consensus 414 ~~--s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 414 RA--SNTKLVCAVGSRNGT 430 (445)
T ss_dssp EE--CSSEEEEEEECSSSS
T ss_pred Ee--cCCEEEEEEcccCCC
Confidence 22 456778888877664
No 30
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.17 E-value=0.11 Score=52.20 Aligned_cols=193 Identities=17% Similarity=0.250 Sum_probs=106.2
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCC-----CCCCceEEEEECCEEEEEcCCCCCCCCCcEEEE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPP-----TPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P-----~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++.||+.... ..+++||..++ .|+.-. ....+ ......+.+..+++||+... ...+++|
T Consensus 53 ~~~v~~~~~~-------g~v~a~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------~g~l~a~ 118 (376)
T 3q7m_A 53 DNVVYAADRA-------GLVKALNADDGKEIWSVSL-AEKDGWFSKEPALLSGGVTVSGGHVYIGSE------KAQVYAL 118 (376)
T ss_dssp TTEEEEECTT-------SEEEEEETTTCCEEEEEEC-CC---CCSCCCCCEEEEEEEETTEEEEEET------TSEEEEE
T ss_pred CCEEEEEcCC-------CeEEEEEccCCceeeeecC-ccccccccccCcccccCceEeCCEEEEEcC------CCEEEEE
Confidence 5578886431 36999998765 677632 11110 12233445566888998653 2479999
Q ss_pred ECCCCe--EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc--EEEeccCCCCCCCC
Q 009435 116 DTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSAR 191 (535)
Q Consensus 116 d~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~--W~~~~~~~~~p~~r 191 (535)
|..+++ |+... . .. ...+.+..++.+|+... ...++.||..+.+ |+.-... .....+
T Consensus 119 d~~tG~~~W~~~~-~----~~-~~~~p~~~~~~v~v~~~------------~g~l~~~d~~tG~~~W~~~~~~-~~~~~~ 179 (376)
T 3q7m_A 119 NTSDGTVAWQTKV-A----GE-ALSRPVVSDGLVLIHTS------------NGQLQALNEADGAVKWTVNLDM-PSLSLR 179 (376)
T ss_dssp ETTTCCEEEEEEC-S----SC-CCSCCEEETTEEEEECT------------TSEEEEEETTTCCEEEEEECCC------C
T ss_pred ECCCCCEEEEEeC-C----Cc-eEcCCEEECCEEEEEcC------------CCeEEEEECCCCcEEEEEeCCC-Cceeec
Confidence 998764 76532 1 11 12233456788887544 2468999987764 8765421 111112
Q ss_pred CceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCC--CCCCCc---eeeEEEEECCEEEEEeccCCCC
Q 009435 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSG--MVLSPR---AGHSTVAFGKNLFVFGGFTDSQ 264 (535)
Q Consensus 192 ~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g--~~p~~R---~~hs~v~~~~~iyv~GG~~~~~ 264 (535)
...+.++.++.+|+ |.. ...++.||+.+.+ |+.-.... .....+ .....+..++.+|+.+.
T Consensus 180 ~~~~~~~~~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----- 247 (376)
T 3q7m_A 180 GESAPTTAFGAAVV-GGD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----- 247 (376)
T ss_dssp CCCCCEEETTEEEE-CCT------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-----
T ss_pred CCCCcEEECCEEEE-EcC------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-----
Confidence 22344455777666 322 1358999987664 77543210 000011 12233456788877642
Q ss_pred CccCcEEEEecCCC--cEEE
Q 009435 265 NLYDDLYMIDVDSG--LWTK 282 (535)
Q Consensus 265 ~~~~dv~~yd~~~~--~W~~ 282 (535)
...++.+|++++ .|+.
T Consensus 248 --~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 248 --NGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp --TSCEEEEETTTCCEEEEE
T ss_pred --CcEEEEEECCCCcEEeec
Confidence 234899999876 4654
No 31
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.17 E-value=0.034 Score=55.77 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=105.4
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~ 113 (535)
+++..++++.||+.|+.+ ..+.++|..+++....-..+ ..-.+++.. +..||+.|..+ ..++
T Consensus 36 ~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~~-----~~v~ 99 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHS------NDVSIIDTATNNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS-----STLS 99 (391)
T ss_dssp EEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT-----TEEE
T ss_pred eEEECCCCCEEEEECCCC------CeEEEEECCCCeEEEEEECC-----CCccceEECCCCCEEEEEECCC-----CEEE
Confidence 344445667777776543 46899999888765532111 122223332 34577666432 4699
Q ss_pred EEECCCCeEEeccccCCCCCCCCCeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
+||+.+++....-.. ...-..++.. + ..+|+.++. .+.++++|+.+.+....-..+.
T Consensus 100 v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~----- 158 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------DKTVSVINTVTKAVINTVSVGR----- 158 (391)
T ss_dssp EEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECCS-----
T ss_pred EEECCCCeEEEEEeC-----CCCcceEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEEEecCC-----
Confidence 999998876443211 1112333333 2 357777662 2468899998877655432211
Q ss_pred CceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccC
Q 009435 192 DSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYD 268 (535)
Q Consensus 192 ~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~ 268 (535)
....++.. ++.||+.++.+ +.+.+||+.+.+...... ....-..++.. +++.+++++... ...
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~---~~~ 224 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVDK---YFN 224 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEECS---SCC
T ss_pred CcceEEECCCCCEEEEEeCCC------CEEEEEECCCCeEEEEEe-----cCCCccceEECCCCCEEEEEecCc---CCC
Confidence 11233332 34676766543 358999998876554432 11112222222 344444443211 134
Q ss_pred cEEEEecCCCcEEE
Q 009435 269 DLYMIDVDSGLWTK 282 (535)
Q Consensus 269 dv~~yd~~~~~W~~ 282 (535)
.+++||+.+..-..
T Consensus 225 ~v~~~d~~~~~~~~ 238 (391)
T 1l0q_A 225 TVSMIDTGTNKITA 238 (391)
T ss_dssp EEEEEETTTTEEEE
T ss_pred cEEEEECCCCeEEE
Confidence 69999998875443
No 32
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.15 E-value=0.022 Score=55.06 Aligned_cols=150 Identities=13% Similarity=-0.031 Sum_probs=97.2
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
++.||+-.|.. ..+.++|+.+++=..-. ++..-.+.+.+..+++||+.... -+.+++||+.|.+-
T Consensus 64 ~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 64 QGHFFESTGHQ------GTLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWSGMPPQR 128 (268)
T ss_dssp TTEEEEEETTT------TEEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEETTTTEE
T ss_pred CCEEEEEcCCC------CEEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEECCcCcE
Confidence 56899988854 23889999987644311 33334556688889999998653 36899999998775
Q ss_pred EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE-eccCCCCCCCCCc-eeEEeeC
Q 009435 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSARDS-HTCSSWK 200 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~-~~~~~~~p~~r~~-~s~~~~~ 200 (535)
..-- +.+-.+.+++..++.||+.-| .+.++.+|+.+.+-.. +... ..+.+... -.+...+
T Consensus 129 ~~ti-----~~~~eGwGLt~Dg~~L~vSdG------------s~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~~d 190 (268)
T 3nok_A 129 ERTT-----RYSGEGWGLCYWNGKLVRSDG------------GTMLTFHEPDGFALVGAVQVK-LRGQPVELINELECAN 190 (268)
T ss_dssp EEEE-----ECSSCCCCEEEETTEEEEECS------------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEET
T ss_pred EEEE-----eCCCceeEEecCCCEEEEECC------------CCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEEeC
Confidence 4311 122346677788889999876 4679999999876443 3321 11211111 1233448
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEE
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~ 231 (535)
++||+-- . ..++|.+.|+++++-..
T Consensus 191 G~lyanv-w-----~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 191 GVIYANI-W-----HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp TEEEEEE-T-----TCSEEEEECTTTCBEEE
T ss_pred CEEEEEE-C-----CCCeEEEEeCCCCcEEE
Confidence 8888532 1 34679999999987444
No 33
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.14 E-value=0.22 Score=48.66 Aligned_cols=207 Identities=13% Similarity=0.067 Sum_probs=108.6
Q ss_pred cceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEE-eeccCCCCC-----CCCceEEEEE--CCEEEEEcCCCC
Q 009435 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPT-----PRDSHSCTTV--GENLYVFGGTDG 105 (535)
Q Consensus 34 gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~-----~R~~hs~~~~--~~~Iyv~GG~~~ 105 (535)
.+..+..++++.+|+.++.+ +.++++|+.+.+-.. +.. +.... +..-+.++.. ++.+|+.+...
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~- 162 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVL-DDRKRTEEVRPLQPRELVADDATNTVYISGIGK- 162 (353)
T ss_dssp CCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEES-CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-
T ss_pred cceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEec-CCCccccccCCCCCceEEECCCCCEEEEEecCC-
Confidence 35556667777788876532 479999998876432 221 11111 1112333332 45688776221
Q ss_pred CCCCCcEEEEECCCCeEEeccc-cCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 106 MNPLRDLHILDTSSHTWISPSV-RGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 106 ~~~~~~~~~yd~~t~~W~~~~~-~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
-..++++|+.+.+-...-. .+. .-+.++.. ++.+|+... .+.++++|+.+.+-....
T Consensus 163 ---~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~------------~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 163 ---ESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTTNA------------DGELITIDTADNKILSRK 222 (353)
T ss_dssp ---SCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEECT------------TSEEEEEETTTTEEEEEE
T ss_pred ---CceEEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEEcC------------CCeEEEEECCCCeEEEEE
Confidence 2469999998876543221 111 11222222 345666543 246788999887644332
Q ss_pred cCCCCCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEec
Q 009435 183 TSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGG 259 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG 259 (535)
..+..........++.. ++.+|+.... .+.+++||+.+.+....-.. +.+ ...+..- ++.+|+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~---~~~--~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITDSK------AAEVLVVDTRNGNILAKVAA---PES--LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEESS------SSEEEEEETTTCCEEEEEEC---SSC--CCEEEETTTTEEEEEET
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEc---CCC--ceEEECCCCCEEEEEEC
Confidence 22111111112223333 4567766432 25699999988876544332 222 1222222 345777654
Q ss_pred cCCCCCccCcEEEEecCCCcEEEEee
Q 009435 260 FTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 260 ~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
.. +.+.+||+.+.+......
T Consensus 292 ~~------~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 292 QA------GKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp TT------TEEEEEETTTTEEEEEEE
T ss_pred CC------CeEEEEECCCCeEEEEEe
Confidence 32 459999998877654433
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.044 Score=54.14 Aligned_cols=198 Identities=10% Similarity=0.007 Sum_probs=99.5
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--C--CEEEEEcCCCCCCCCCcE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G--ENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~~Iyv~GG~~~~~~~~~~ 112 (535)
++++..++.+++.|+.+ ..+.+||....++..+.. +......-.++.+ + +.+++.|+.+ ..+
T Consensus 16 ~~~~s~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v 81 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSD------KTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYD-----GKV 81 (379)
T ss_dssp EEEECSSSSEEEEEETT------SCEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETT-----SCE
T ss_pred EEEEcCCCCEEEEEECC------CcEEEEecCCCcceeeeE---ecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEE
Confidence 33443333455666643 357888887666665431 1111222233333 2 5677777764 358
Q ss_pred EEEECCCCeEEeccccCCCCCCCCCeEEEEE-C--CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE-EEeccCCCCC
Q 009435 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV-G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPP 188 (535)
Q Consensus 113 ~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~--~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W-~~~~~~~~~p 188 (535)
.+||+.+.+|........ ....-.+++.. + +.+++.|+. ...+.+||+.+..- ...... .
T Consensus 82 ~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~-~-- 145 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASS-----------DGKVSVVEFKENGTTSPIIID-A-- 145 (379)
T ss_dssp EEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEET-----------TSEEEEEECCTTSCCCEEEEE-C--
T ss_pred EEEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEecC-----------CCcEEEEecCCCCceeeEEec-C--
Confidence 899999998766553211 11111222222 2 457777763 24577788766521 111100 0
Q ss_pred CCCCceeEEee--------------CCEEEEEecCCCCCcccCceEEEECCCC--cEEEeecCCCCCCCce-eeEEEEE-
Q 009435 189 SARDSHTCSSW--------------KNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRA-GHSTVAF- 250 (535)
Q Consensus 189 ~~r~~~s~~~~--------------~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~v~~~g~~p~~R~-~hs~v~~- 250 (535)
....-.+++.. ++.+++.|+.++ .+.+||+.+. .|..+.. ...... -.+++..
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~---~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSP 216 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEE---ECCCSSCEEEEEECC
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEE---EecccCcEeEEEECC
Confidence 01111122222 367788887654 3777887544 3554433 111111 1223322
Q ss_pred C---CEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 251 G---KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 251 ~---~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
+ +.+++.|+... .+.+||+.+..
T Consensus 217 ~~~~~~~l~s~~~dg------~i~iwd~~~~~ 242 (379)
T 3jrp_A 217 TVLLRSYLASVSQDR------TCIIWTQDNEQ 242 (379)
T ss_dssp CCSSSEEEEEEETTS------CEEEEEESSTT
T ss_pred CCCCCCeEEEEeCCC------EEEEEeCCCCC
Confidence 3 67888887643 38888887763
No 35
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.01 E-value=0.069 Score=53.45 Aligned_cols=187 Identities=16% Similarity=0.248 Sum_probs=103.6
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (535)
+++|+.|+.+ +.+.++|..+++-...-. +. ..-.+++.. +..||+.|+.+ ..+.++|+.+++
T Consensus 2 ~~l~vs~~~d------~~v~v~d~~~~~~~~~~~-~~----~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~ 65 (391)
T 1l0q_A 2 TFAYIANSES------DNISVIDVTSNKVTATIP-VG----SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNN 65 (391)
T ss_dssp EEEEEEETTT------TEEEEEETTTTEEEEEEE-CS----SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTE
T ss_pred CEEEEEcCCC------CEEEEEECCCCeEEEEee-cC----CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCe
Confidence 3577777643 468999998876554221 11 112233332 34577777543 479999999887
Q ss_pred EEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee
Q 009435 122 WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 199 (535)
Q Consensus 122 W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~ 199 (535)
....-.. .. .-..++.. +..||+.+.. ...++++|+.+.+........ .....++..
T Consensus 66 ~~~~~~~---~~--~v~~~~~spdg~~l~~~~~~-----------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s 124 (391)
T 1l0q_A 66 VIATVPA---GS--SPQGVAVSPDGKQVYVTNMA-----------SSTLSVIDTTSNTVAGTVKTG-----KSPLGLALS 124 (391)
T ss_dssp EEEEEEC---SS--SEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECS-----SSEEEEEEC
T ss_pred EEEEEEC---CC--CccceEECCCCCEEEEEECC-----------CCEEEEEECCCCeEEEEEeCC-----CCcceEEEC
Confidence 6543211 11 22233333 2356666542 246889999987655443211 112333333
Q ss_pred --CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEeccCCCCCccCcEEEEec
Q 009435 200 --KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDV 275 (535)
Q Consensus 200 --~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (535)
+..+|+.++.+ +.+.+||+.+.+....-..+ ..-..++.. +..+|+.++.. +.+++||+
T Consensus 125 ~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~------~~v~~~d~ 187 (391)
T 1l0q_A 125 PDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS------MSISVIDT 187 (391)
T ss_dssp TTSSEEEEEETTT------TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT------TEEEEEET
T ss_pred CCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC------CEEEEEEC
Confidence 34576776543 35999999988765543321 111233333 34566666542 35999999
Q ss_pred CCCcEEEEe
Q 009435 276 DSGLWTKVI 284 (535)
Q Consensus 276 ~~~~W~~l~ 284 (535)
.+.......
T Consensus 188 ~~~~~~~~~ 196 (391)
T 1l0q_A 188 VTNSVIDTV 196 (391)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 887655443
No 36
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.99 E-value=0.35 Score=48.32 Aligned_cols=171 Identities=19% Similarity=0.239 Sum_probs=97.1
Q ss_pred ceEEEEEcCCC--eEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccCCCCCCC
Q 009435 60 NQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPEAR 135 (535)
Q Consensus 60 ~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r 135 (535)
..++.||..++ .|+... .......+...+.+..++.||+ |.. -..++.||+.+.+ |+.... .+...
T Consensus 153 g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~v~~-g~~-----~g~l~~~d~~tG~~~w~~~~~---~~~~~ 222 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNL-DMPSLSLRGESAPTTAFGAAVV-GGD-----NGRVSAVLMEQGQMIWQQRIS---QATGS 222 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC-CC-----CCCCCCEEETTEEEE-CCT-----TTEEEEEETTTCCEEEEEECC---C----
T ss_pred CeEEEEECCCCcEEEEEeC-CCCceeecCCCCcEEECCEEEE-EcC-----CCEEEEEECCCCcEEEEEecc---cCCCC
Confidence 46889998776 487632 1111111223344555777776 322 2369999998764 765321 11110
Q ss_pred --------CCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEE
Q 009435 136 --------EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (535)
Q Consensus 136 --------~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv 205 (535)
.....+..++.+|+.+. ...++++|+.+. .|+... + ...+.+..++.||+
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~------------~g~l~~~d~~tG~~~w~~~~-----~---~~~~~~~~~~~l~~ 282 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAY------------NGNLTALDLRSGQIMWKREL-----G---SVNDFIVDGNRIYL 282 (376)
T ss_dssp -------CCCCCCEEETTEEEEECT------------TSCEEEEETTTCCEEEEECC-----C---CEEEEEEETTEEEE
T ss_pred cccccccccCCCcEEECCEEEEEec------------CcEEEEEECCCCcEEeeccC-----C---CCCCceEECCEEEE
Confidence 12334456788888653 235889998765 476532 1 12345556888888
Q ss_pred EecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 206 IGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
... ...++.||+.+.+ |+.-. ...+...+.+..++.||+... ...+++||+++++
T Consensus 283 ~~~-------~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~l~v~~~-------~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 283 VDQ-------NDRVMALTIDGGVTLWTQSD-----LLHRLLTSPVLYNGNLVVGDS-------EGYLHWINVEDGR 339 (376)
T ss_dssp EET-------TCCEEEEETTTCCEEEEECT-----TTTSCCCCCEEETTEEEEECT-------TSEEEEEETTTCC
T ss_pred EcC-------CCeEEEEECCCCcEEEeecc-----cCCCcccCCEEECCEEEEEeC-------CCeEEEEECCCCc
Confidence 753 1358999998775 76531 112223334556888887532 1349999998876
No 37
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.05 Score=60.84 Aligned_cols=214 Identities=9% Similarity=0.054 Sum_probs=116.8
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCC-e
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG-H 138 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-h 138 (535)
-+++||+.+++++.+... .++. ..-.+.+.. ++.|++-.. .-+++||+.+.+|+..........+... .
T Consensus 428 Gl~~~~~~~~~~~~~~~~-~~~~-~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELE-KNEL-LDVRVFYEDKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVR 498 (781)
T ss_dssp EEEEECSSSCEEEECCST-TTCC-CCEEEEEECTTSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEE
T ss_pred CEEEEcCCCCcEEEeccC-CCCC-CeEEEEEECCCCCEEEEEC-------CceEEEeCCCCeEEecccCcccccccceeE
Confidence 467778777777765421 1111 111222222 467777531 4699999999888655421111111111 1
Q ss_pred EEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCccc
Q 009435 139 SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYL 216 (535)
Q Consensus 139 s~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~ 216 (535)
+++.. ++.|+|-.- ...+++||+.+.+++.......++.... .+++. .++.|++-..
T Consensus 499 ~i~~d~~g~lWigt~------------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-------- 557 (781)
T 3v9f_A 499 SIAQDSEGRFWIGTF------------GGGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-------- 557 (781)
T ss_dssp EEEECTTCCEEEEES------------SSCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET--------
T ss_pred EEEEcCCCCEEEEEc------------CCCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC--------
Confidence 22222 356776431 1348899999999988764322332211 22222 2567776432
Q ss_pred Cce-EEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCce
Q 009435 217 SDV-HILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARF 294 (535)
Q Consensus 217 ~~i-~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~ 294 (535)
+.+ ++||+++.+++.......+|.... .+++.- ++.|++.+. +.+.+||+++.++.........+...+
T Consensus 558 ~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~--------~Gl~~~~~~~~~~~~~~~~dGl~~~~f 628 (781)
T 3v9f_A 558 EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN--------TGISCYITSKKCFYTYDHSNNIPQGSF 628 (781)
T ss_dssp TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS--------SCEEEEETTTTEEEEECGGGTCCSSCE
T ss_pred CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC--------CceEEEECCCCceEEecccCCcccccc
Confidence 236 899999988887754322443333 233332 467777542 248999999999888765444455555
Q ss_pred eeeeeeecccCCCEEEEEcccC
Q 009435 295 SVAGDCLDPLKGGVLVFIGGCN 316 (535)
Q Consensus 295 ~~~~~~~~~~~~~~l~v~GG~~ 316 (535)
...+.+. ..++.|++ ||.+
T Consensus 629 ~~~~~~~--~~~G~l~~-g~~~ 647 (781)
T 3v9f_A 629 ISGCVTK--DHNGLIYF-GSIN 647 (781)
T ss_dssp EEEEEEE--CTTSCEEE-EETT
T ss_pred ccCceEE--CCCCEEEE-ECCC
Confidence 4444443 34666665 5443
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.77 E-value=0.32 Score=46.85 Aligned_cols=222 Identities=12% Similarity=0.060 Sum_probs=111.0
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
++....++..++.|+.+ ..+.+||..+.+...... .........+..+ +++.++.|+.+ ..+.+
T Consensus 102 ~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~ 167 (337)
T 1gxr_A 102 SCKLLPDGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSD-----GNIAV 167 (337)
T ss_dssp EEEECTTSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred EEEEcCCCCEEEEEcCC------CcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCC-----CcEEE
Confidence 33443333355556533 468899998876443221 1111111222222 45666777654 35899
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
||..+.+....- ... ...-.+++.. ++..++.|+. ...+.+||+.+.+-...... + ...
T Consensus 168 ~d~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~---~--~~v 227 (337)
T 1gxr_A 168 WDLHNQTLVRQF---QGH-TDGASCIDISNDGTKLWTGGL-----------DNTVRSWDLREGRQLQQHDF---T--SQI 227 (337)
T ss_dssp EETTTTEEEEEE---CCC-SSCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEEC---S--SCE
T ss_pred EeCCCCceeeee---ecc-cCceEEEEECCCCCEEEEEec-----------CCcEEEEECCCCceEeeecC---C--Cce
Confidence 999887654322 111 1111222222 4556666663 24588899887654333211 1 111
Q ss_pred eeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEE
Q 009435 194 HTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (535)
Q Consensus 194 ~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~ 271 (535)
.+++. .++.++++|+.++ .+.+||+.+..-..+.. ....-.++... ++++++.|+.. ..+.
T Consensus 228 ~~~~~s~~~~~l~~~~~~~------~i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d------g~i~ 290 (337)
T 1gxr_A 228 FSLGYCPTGEWLAVGMESS------NVEVLHVNKPDKYQLHL-----HESCVLSLKFAYCGKWFVSTGKD------NLLN 290 (337)
T ss_dssp EEEEECTTSSEEEEEETTS------CEEEEETTSSCEEEECC-----CSSCEEEEEECTTSSEEEEEETT------SEEE
T ss_pred EEEEECCCCCEEEEEcCCC------cEEEEECCCCCeEEEcC-----CccceeEEEECCCCCEEEEecCC------CcEE
Confidence 22222 2566777776543 48899998776443322 11111222222 45667777653 3489
Q ss_pred EEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 272 MIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 272 ~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
+||+.+..-....... .......+ ..++.+++.|+.+.
T Consensus 291 ~~~~~~~~~~~~~~~~------~~v~~~~~--s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 291 AWRTPYGASIFQSKES------SSVLSCDI--SVDDKYIVTGSGDK 328 (337)
T ss_dssp EEETTTCCEEEEEECS------SCEEEEEE--CTTSCEEEEEETTS
T ss_pred EEECCCCeEEEEecCC------CcEEEEEE--CCCCCEEEEecCCC
Confidence 9999887654332211 11122222 34566777776554
No 39
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.75 E-value=0.079 Score=59.38 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=112.5
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCC-CCCCCC
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEG-PEAREG 137 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~-p~~r~~ 137 (535)
-+++||+.++++..+....+ ..+.....+... ++.|++-.. +.+++||+.+++|+........ ..+...
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~-~l~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNS-QLVNENVYAILPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQ 499 (795)
T ss_dssp EEEEEETTTCCEEEECTTTS-CCSCSCEEEEEECSSSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCC
T ss_pred ceeEEeCCCCcEEEeecCCC-CcCCCeeEEEEECCCCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCce
Confidence 46778887777776542111 011111112222 456776542 3599999999999876532100 111111
Q ss_pred -eEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccC---CCCCCCCCceeEEe-eCCEEEEEecCCC
Q 009435 138 -HSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS---GNPPSARDSHTCSS-WKNKIIVIGGEDG 211 (535)
Q Consensus 138 -hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~---~~~p~~r~~~s~~~-~~~~lyv~GG~~~ 211 (535)
.+++.. ++.|+|-.. ..+++||+.+.++ ..... ..++.. ...+++. .++.|++-..
T Consensus 500 i~~i~~d~~g~lWigt~-------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT~--- 561 (795)
T 4a2l_A 500 ITTLFRDSHKRLWIGGE-------------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGTR--- 561 (795)
T ss_dssp EEEEEECTTCCEEEEES-------------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEES---
T ss_pred EEEEEECCCCCEEEEeC-------------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEeC---
Confidence 122222 356777432 3488999988888 44311 011111 1122222 2567776432
Q ss_pred CCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCC
Q 009435 212 HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGP 290 (535)
Q Consensus 212 ~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p 290 (535)
+.+++||+.+.+++.......+|.... .+++.- ++.|++.+. +.+.+||+++.++.........+
T Consensus 562 -----~Gl~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~~~dGl~ 627 (795)
T 4a2l_A 562 -----EGFYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN--------RGISCFNPETEKFRNFTESDGLQ 627 (795)
T ss_dssp -----SCEEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET--------TEEEEEETTTTEEEEECGGGTCS
T ss_pred -----CCceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC--------CceEEEcCCCCcEEEcCCcCCCc
Confidence 238999999999888754322343322 233332 467777652 24899999999988776544445
Q ss_pred CCceeeeeeeecccCCCEEEEEccc
Q 009435 291 SARFSVAGDCLDPLKGGVLVFIGGC 315 (535)
Q Consensus 291 ~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (535)
...+...+.+. ..++.|++ ||.
T Consensus 628 ~~~f~~~~~~~--~~~G~l~~-g~~ 649 (795)
T 4a2l_A 628 SNQFNTASYCR--TSVGQMYF-GGI 649 (795)
T ss_dssp CSCEEEEEEEE--CTTSCEEE-EET
T ss_pred cccCccCceeE--CCCCeEEE-ecC
Confidence 45544333333 34666665 443
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.73 E-value=0.46 Score=45.81 Aligned_cols=229 Identities=14% Similarity=0.165 Sum_probs=111.7
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
++.+..++..++.|+.+ ..+.++|..+.+....- .+ ....-.++.+ ++++++.|+.+ ..+.+
T Consensus 28 ~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~-~~----h~~~v~~~~~~~~~~~l~s~~~d-----~~i~v 91 (312)
T 4ery_A 28 SVKFSPNGEWLASSSAD------KLIKIWGAYDGKFEKTI-SG----HKLGISDVAWSSDSNLLVSASDD-----KTLKI 91 (312)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEE-CC----CSSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred EEEECCCCCEEEEeeCC------CeEEEEeCCCcccchhh-cc----CCCceEEEEEcCCCCEEEEECCC-----CEEEE
Confidence 34444344456666643 35788898887766532 11 1112222222 45677777754 46888
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
||..+.+-...- .+. .. .-.++.. .++.+++.|+.+ ..+.++|+.+.+-...-.. .. ..-
T Consensus 92 wd~~~~~~~~~~-~~~--~~-~v~~~~~~~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~---~~-~~v 152 (312)
T 4ery_A 92 WDVSSGKCLKTL-KGH--SN-YVFCCNFNPQSNLIVSGSFD-----------ESVRIWDVKTGKCLKTLPA---HS-DPV 152 (312)
T ss_dssp EETTTCCEEEEE-ECC--SS-CEEEEEECSSSSEEEEEETT-----------SCEEEEETTTCCEEEEECC---CS-SCE
T ss_pred EECCCCcEEEEE-cCC--CC-CEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCEEEEEecC---CC-CcE
Confidence 998876543211 000 00 1111222 235667777732 3477888887654332110 00 011
Q ss_pred eeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEE
Q 009435 194 HTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 194 ~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
.++.. .++.+++.|+.++ .+.+||+.+.+....-.. .........+..-+++.++.|+.. ..+.+
T Consensus 153 ~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i 218 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLD------NTLKL 218 (312)
T ss_dssp EEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETT------TEEEE
T ss_pred EEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCC------CeEEE
Confidence 12222 2566777887653 488999987764432211 111111112222345666666643 34899
Q ss_pred EecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC
Q 009435 273 IDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 273 yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
||+.+..-........ ........... ..++.+++.|+.+..
T Consensus 219 wd~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~l~sg~~dg~ 260 (312)
T 4ery_A 219 WDYSKGKCLKTYTGHK--NEKYCIFANFS--VTGGKWIVSGSEDNL 260 (312)
T ss_dssp EETTTTEEEEEECSSC--CSSSCCCEEEE--CSSSCEEEECCTTSC
T ss_pred EECCCCcEEEEEEecC--CceEEEEEEEE--eCCCcEEEEECCCCE
Confidence 9998875433222111 11111111111 245677778876653
No 41
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.60 E-value=0.2 Score=49.32 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=76.7
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++.+..++.+++.|+.+ ..+.+||..+.+|..+..-.... ..-.+++.. ++++++.|+.+ ..+.+|
T Consensus 13 ~~~~s~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~d-----g~i~vw 79 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAPDSNRIVTCGTD-----RNAYVW 79 (372)
T ss_dssp EEEECTTSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCS--SCEEEEEEETTTTEEEEEETT-----SCEEEE
T ss_pred EEEECCCCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeCCCCEEEEEcCC-----CeEEEE
Confidence 33443334466777643 46889999988766543211111 111222222 56677777654 358889
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc-EEEeccCCCCCCCCCc
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATTSGNPPSARDS 193 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~-W~~~~~~~~~p~~r~~ 193 (535)
|..+.++........ ....-.++... ++++++.|+.+ ..+.+||+.+.. |...... ..+....-
T Consensus 80 d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----------~~v~i~d~~~~~~~~~~~~~-~~~~~~~i 145 (372)
T 1k8k_C 80 TLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGSGS-----------RVISICYFEQENDWWVCKHI-KKPIRSTV 145 (372)
T ss_dssp EEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEETT-----------SSEEEEEEETTTTEEEEEEE-CTTCCSCE
T ss_pred ECCCCeeeeeEEeec--CCCceeEEEECCCCCEEEEEeCC-----------CEEEEEEecCCCcceeeeee-ecccCCCe
Confidence 998888765432111 11111222222 45666766631 335556655433 3322211 01111112
Q ss_pred eeEEee-CCEEEEEecCCCCCcccCceEEEECC
Q 009435 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD 225 (535)
Q Consensus 194 ~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~ 225 (535)
.+++.. ++.+++.|+.++ .+.+||+.
T Consensus 146 ~~~~~~~~~~~l~~~~~dg------~i~~~d~~ 172 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDF------KCRIFSAY 172 (372)
T ss_dssp EEEEECTTSSEEEEEETTS------CEEEEECC
T ss_pred eEEEEcCCCCEEEEEcCCC------CEEEEEcc
Confidence 222222 566777777543 47888854
No 42
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.57 E-value=0.13 Score=52.16 Aligned_cols=189 Identities=12% Similarity=0.021 Sum_probs=97.4
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs 139 (535)
.+|.+|+.+.++..+.. .+....-.+++.. ++++++.++.+ ..+.+||+.+.+.......+..........
T Consensus 102 ~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 102 KLIALDKEGITHRFISR---FKTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp CEEECCBTTCSEEEEEE---EECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred EEEEECCCCCcceEEEE---EcCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCcee
Confidence 68888887775554431 1111111222222 67888887643 359999999887654321101111111122
Q ss_pred EEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee--CCEEEEEecCCCCCcc
Q 009435 140 AALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYY 215 (535)
Q Consensus 140 ~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~ 215 (535)
.+.. ++++|+.++. ...+.++|+.+.+....-.. ......+++.. ++.+|+.++.+
T Consensus 174 ~~~~~~~~~~~~s~~~-----------d~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~----- 233 (433)
T 3bws_A 174 TISIPEHNELWVSQMQ-----------ANAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSNWIS----- 233 (433)
T ss_dssp EEEEGGGTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEETTT-----
T ss_pred EEEEcCCCEEEEEECC-----------CCEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEecCC-----
Confidence 2223 5778887762 24688999887654332210 11112223332 45566666543
Q ss_pred cCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCc--cCcEEEEecCCCcEEEE
Q 009435 216 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNL--YDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 216 ~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~--~~dv~~yd~~~~~W~~l 283 (535)
..+.+||+.+.+....-. ....-..++.. +++.+++++....... -..|++||+.+.+-...
T Consensus 234 -~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 234 -EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp -TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred -CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 358999998876544322 12222233332 4445555554322111 24689999988765443
No 43
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.52 E-value=0.47 Score=52.19 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=67.7
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCC--------CCCceEEEEECCEEEEEcCCCCCCCCCcE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPT--------PRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~--------~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~ 112 (535)
++.||+... .+.++.+|..++ .|+.-. ..+. .....+.+..+++||+... -..+
T Consensus 77 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l 140 (677)
T 1kb0_A 77 DGIMYVSAS-------WSVVHAIDTRTGNRIWTYDP---QIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRL 140 (677)
T ss_dssp TTEEEEECG-------GGCEEEEETTTTEEEEEECC---CCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CCEEEEECC-------CCeEEEEECCCCcEEEEEcC---CCCccccccccccCCCCCceEECCEEEEEcC------CCEE
Confidence 567887654 256999998876 688632 1110 0112345567889988743 2579
Q ss_pred EEEECCCCe--EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc--EEEec
Q 009435 113 HILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRAT 182 (535)
Q Consensus 113 ~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~--W~~~~ 182 (535)
+.+|..|++ |+...............+.++.++.+|+-.+.. +......++.||..+.+ |+.-.
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~------~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA------EYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCT------TTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccc------ccCCCCEEEEEECCCCcEEEEecc
Confidence 999998765 875321000000112223455678887754421 11134679999998764 87654
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.49 E-value=0.36 Score=48.67 Aligned_cols=210 Identities=17% Similarity=0.168 Sum_probs=101.3
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEE
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~ 140 (535)
.+.+||..+.+....- ........++..++.+++.|+.+ ..+.+||+.+..-......+ ....-.++
T Consensus 157 ~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~v~~~ 223 (401)
T 4aez_A 157 LVDIYDVESQTKLRTM-----AGHQARVGCLSWNRHVLSSGSRS-----GAIHHHDVRIANHQIGTLQG---HSSEVCGL 223 (401)
T ss_dssp CEEEEETTTCCEEEEE-----CCCSSCEEEEEEETTEEEEEETT-----SEEEEEETTSSSCEEEEEEC---CSSCEEEE
T ss_pred eEEEEECcCCeEEEEe-----cCCCCceEEEEECCCEEEEEcCC-----CCEEEEecccCcceeeEEcC---CCCCeeEE
Confidence 4677777766543321 11122233344466677777654 46888888743211111110 11111122
Q ss_pred EEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee--CCEEEEEecCCCCCcccC
Q 009435 141 ALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLS 217 (535)
Q Consensus 141 ~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~ 217 (535)
+.. ++.+++.|+.+ ..+.+||+.+..-...-. . ....-.+++.. +..+++.||... -.
T Consensus 224 ~~~~~~~~l~s~~~d-----------~~v~iwd~~~~~~~~~~~--~--~~~~v~~~~~~p~~~~ll~~~~gs~----d~ 284 (401)
T 4aez_A 224 AWRSDGLQLASGGND-----------NVVQIWDARSSIPKFTKT--N--HNAAVKAVAWCPWQSNLLATGGGTM----DK 284 (401)
T ss_dssp EECTTSSEEEEEETT-----------SCEEEEETTCSSEEEEEC--C--CSSCCCEEEECTTSTTEEEEECCTT----TC
T ss_pred EEcCCCCEEEEEeCC-----------CeEEEccCCCCCccEEec--C--CcceEEEEEECCCCCCEEEEecCCC----CC
Confidence 222 45677777732 457888988754332211 1 11111223332 456777775221 13
Q ss_pred ceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCcee
Q 009435 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS 295 (535)
Q Consensus 218 ~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~ 295 (535)
.+..||+.+.+-...-.. .. .-.+++.. +..+++.+|..+ ..+.+||+.+.....+..... ....
T Consensus 285 ~i~i~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~~l~~~~g~~d-----g~i~v~~~~~~~~~~~~~~~~---h~~~ 351 (401)
T 4aez_A 285 QIHFWNAATGARVNTVDA---GS--QVTSLIWSPHSKEIMSTHGFPD-----NNLSIWSYSSSGLTKQVDIPA---HDTR 351 (401)
T ss_dssp EEEEEETTTCCEEEEEEC---SS--CEEEEEECSSSSEEEEEECTTT-----CEEEEEEEETTEEEEEEEEEC---CSSC
T ss_pred EEEEEECCCCCEEEEEeC---CC--cEEEEEECCCCCeEEEEeecCC-----CcEEEEecCCccceeEEEecC---CCCC
Confidence 488999987764433221 11 11122222 334555545433 358999998877766543211 1111
Q ss_pred eeeeeecccCCCEEEEEcccCC
Q 009435 296 VAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
.....+ ..++.+++.||.+.
T Consensus 352 v~~~~~--s~dg~~l~s~~~dg 371 (401)
T 4aez_A 352 VLYSAL--SPDGRILSTAASDE 371 (401)
T ss_dssp CCEEEE--CTTSSEEEEECTTS
T ss_pred EEEEEE--CCCCCEEEEEeCCC
Confidence 122222 34666777777654
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.47 E-value=0.31 Score=46.90 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=108.4
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
++.+..++.+++.|+ + ..+.+||..+.........-..........++.+ +++.++.|+.+ ..+.+
T Consensus 56 ~~~~~~~~~~l~~~~-d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~ 123 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-K------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLSI 123 (337)
T ss_dssp EEEECSSSSEEEEEC-B------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEEE
T ss_pred EEEEecCCcEEEEcC-C------CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEE
Confidence 344444444656665 3 3688888876532211000000011112222222 45566666643 46899
Q ss_pred EECCCCeEEeccccCCCCCCCCCe-EEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCC
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGH-SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~h-s~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~ 192 (535)
||..+.+....... ....... +++.. ++++++.|+. ...+.+||+.+.+....-. .... .
T Consensus 124 ~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~v~~~d~~~~~~~~~~~---~~~~-~ 185 (337)
T 1gxr_A 124 WDLAAPTPRIKAEL---TSSAPACYALAISPDSKVCFSCCS-----------DGNIAVWDLHNQTLVRQFQ---GHTD-G 185 (337)
T ss_dssp EECCCC--EEEEEE---ECSSSCEEEEEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEEC---CCSS-C
T ss_pred EECCCCCcceeeec---ccCCCceEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCceeeeee---cccC-c
Confidence 99988774332211 1111111 22222 4566666663 2358889988775443321 1111 1
Q ss_pred ceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCcE
Q 009435 193 SHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDL 270 (535)
Q Consensus 193 ~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv 270 (535)
-.+++.. ++..++.|+.+ ..+.+||+.+.+-..... .+. .-.++.. -+++++++|+.. ..+
T Consensus 186 i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~---~~~--~v~~~~~s~~~~~l~~~~~~------~~i 248 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---FTS--QIFSLGYCPTGEWLAVGMES------SNV 248 (337)
T ss_dssp EEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---CSS--CEEEEEECTTSSEEEEEETT------SCE
T ss_pred eEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec---CCC--ceEEEEECCCCCEEEEEcCC------CcE
Confidence 1222222 56677777654 348899998775443322 111 1122222 245677777643 348
Q ss_pred EEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 271 YMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 271 ~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
.+||+.+..-..+... ........+ ..++.+++.|+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~------~~~v~~~~~--~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 249 EVLHVNKPDKYQLHLH------ESCVLSLKF--AYCGKWFVSTGKDN 287 (337)
T ss_dssp EEEETTSSCEEEECCC------SSCEEEEEE--CTTSSEEEEEETTS
T ss_pred EEEECCCCCeEEEcCC------ccceeEEEE--CCCCCEEEEecCCC
Confidence 9999988764333221 111222222 34566667776543
No 46
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.41 E-value=0.22 Score=50.42 Aligned_cols=203 Identities=9% Similarity=-0.023 Sum_probs=104.7
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
+++..++.+++.++.+ ..+.+||..+.+.......+..........++.+ ++++|+.|+.+ ..+.+|
T Consensus 128 ~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~ 196 (433)
T 3bws_A 128 VRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVF 196 (433)
T ss_dssp CEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEE
T ss_pred EEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEE
Confidence 3343366787777643 3589999998876653211111111222223333 67888888643 468999
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
|+.+.+....-. .....-.+++.. +..+|+.++. ...+.+||+.+.+....... ....
T Consensus 197 d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~-----~~~~ 256 (433)
T 3bws_A 197 DLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWI-----------SEDISVIDRKTKLEIRKTDK-----IGLP 256 (433)
T ss_dssp ETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETT-----------TTEEEEEETTTTEEEEECCC-----CSEE
T ss_pred ECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecC-----------CCcEEEEECCCCcEEEEecC-----CCCc
Confidence 998865432211 111112233333 3457777652 23688999988765443211 1112
Q ss_pred eeEEee-CCEEEEEecCCCCCcc--cCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEeccCCCCCccC
Q 009435 194 HTCSSW-KNKIIVIGGEDGHDYY--LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYD 268 (535)
Q Consensus 194 ~s~~~~-~~~lyv~GG~~~~~~~--~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~~~~~~~~ 268 (535)
..++.. +++.+++++....... -..+.+||+.+.+-..... .+. .-..++.. ++.+|+.++.. +
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---~~~--~~~~~~~~~~g~~l~~~~~~~------~ 325 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---PPG--NKRHIVSGNTENKIYVSDMCC------S 325 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---EEE--CEEEEEECSSTTEEEEEETTT------T
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---CCC--CcceEEECCCCCEEEEEecCC------C
Confidence 233332 4544444443222111 2468899998876444321 111 11122222 33677776543 3
Q ss_pred cEEEEecCCCcEEE
Q 009435 269 DLYMIDVDSGLWTK 282 (535)
Q Consensus 269 dv~~yd~~~~~W~~ 282 (535)
.+.+||+.+.+-..
T Consensus 326 ~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 326 KIEVYDLKEKKVQK 339 (433)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEE
Confidence 59999998765443
No 47
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.36 E-value=0.26 Score=50.39 Aligned_cols=184 Identities=14% Similarity=0.201 Sum_probs=99.3
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEe
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 124 (535)
..++.|+.+ ..+.+||..+.+-...- .+ ....-.+...++.+++.|+.+ ..+.+||..+.+-..
T Consensus 144 ~~l~~g~~d------g~i~iwd~~~~~~~~~~-~~----h~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 144 QKIVSGLRD------NTIKIWDKNTLECKRIL-TG----HTGSVLCLQYDERVIITGSSD-----STVRVWDVNTGEMLN 207 (435)
T ss_dssp SEEEEEESS------SCEEEEESSSCCEEEEE-CC----CSSCEEEEECCSSEEEEEETT-----SCEEEEESSSCCEEE
T ss_pred CEEEEEeCC------CeEEEEeCCCCeEEEEE-cC----CCCcEEEEEECCCEEEEEcCC-----CeEEEEECCCCcEEE
Confidence 356667643 45889998877654422 11 122334444577788888765 358899998876432
Q ss_pred ccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEe-ccCCCCCCCCCceeEEeeCCEE
Q 009435 125 PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA-TTSGNPPSARDSHTCSSWKNKI 203 (535)
Q Consensus 125 ~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~-~~~~~~p~~r~~~s~~~~~~~l 203 (535)
.- .........+...+.+++.|+.+ ..+.++|+.+..-... ... ........++..++..
T Consensus 208 ~~-----~~h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~ 268 (435)
T 1p22_A 208 TL-----IHHCEAVLHLRFNNGMMVTCSKD-----------RSIAVWDMASPTDITLRRVL---VGHRAAVNVVDFDDKY 268 (435)
T ss_dssp EE-----CCCCSCEEEEECCTTEEEEEETT-----------SCEEEEECSSSSCCEEEEEE---CCCSSCEEEEEEETTE
T ss_pred EE-----cCCCCcEEEEEEcCCEEEEeeCC-----------CcEEEEeCCCCCCceeeeEe---cCCCCcEEEEEeCCCE
Confidence 21 11112223334455667777732 3577888776532111 100 0111122233346666
Q ss_pred EEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcE
Q 009435 204 IVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (535)
Q Consensus 204 yv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (535)
++.|+.+ ..+.+||+.+.+-...-. .......++..++.+++.|+.+ ..|.+||+.+..-
T Consensus 269 l~s~~~d------g~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~ 328 (435)
T 1p22_A 269 IVSASGD------RTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRDRLVVSGSSD------NTIRLWDIECGAC 328 (435)
T ss_dssp EEEEETT------SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTEEEEEETT------SCEEEEETTTCCE
T ss_pred EEEEeCC------CeEEEEECCcCcEEEEEc-----CCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCCCCE
Confidence 6777654 348899998765433221 1111123344456677777753 3489999987653
No 48
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.31 E-value=0.91 Score=44.38 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=109.2
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEEC
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~ 117 (535)
+.+..+..+++.|+.+ ..+.++|..+.+-...-..+ +. .....+..-+++.++.|+.+ ..+.+||.
T Consensus 86 ~~~~~~~~~l~s~s~D------~~i~lWd~~~~~~~~~~~~~--~~-~~~~~~~spdg~~l~~g~~d-----g~v~i~~~ 151 (321)
T 3ow8_A 86 VDISHTLPIAASSSLD------AHIRLWDLENGKQIKSIDAG--PV-DAWTLAFSPDSQYLATGTHV-----GKVNIFGV 151 (321)
T ss_dssp EEECSSSSEEEEEETT------SEEEEEETTTTEEEEEEECC--TT-CCCCEEECTTSSEEEEECTT-----SEEEEEET
T ss_pred EEECCCCCEEEEEeCC------CcEEEEECCCCCEEEEEeCC--Cc-cEEEEEECCCCCEEEEEcCC-----CcEEEEEc
Confidence 3333333355555543 46888898877644321111 11 11111122255677777653 45788888
Q ss_pred CCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeE
Q 009435 118 SSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (535)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~ 196 (535)
.+..-...-. .....-.+++.. ++++++.|+.+ ..+.+||+.+.+-...-. . .... -.++
T Consensus 152 ~~~~~~~~~~----~~~~~v~~~~~spdg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~--~-h~~~-v~~l 212 (321)
T 3ow8_A 152 ESGKKEYSLD----TRGKFILSIAYSPDGKYLASGAID-----------GIINIFDIATGKLLHTLE--G-HAMP-IRSL 212 (321)
T ss_dssp TTCSEEEEEE----CSSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--C-CSSC-CCEE
T ss_pred CCCceeEEec----CCCceEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--c-cCCc-eeEE
Confidence 7765322110 011111122222 45677777732 357888988765433211 0 1111 1122
Q ss_pred Ee-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEe
Q 009435 197 SS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMID 274 (535)
Q Consensus 197 ~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd 274 (535)
+. .++.+++.|+.++ .+.+||+.+......-. + ....-.+++.. ++.+++.|+.+. .+.+||
T Consensus 213 ~~spd~~~l~s~s~dg------~i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D~------~v~iwd 276 (321)
T 3ow8_A 213 TFSPDSQLLVTASDDG------YIKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSDK------SVKVWD 276 (321)
T ss_dssp EECTTSCEEEEECTTS------CEEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred EEcCCCCEEEEEcCCC------eEEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCCC------cEEEEe
Confidence 22 2677888887653 38889988765443221 0 11111122222 456777777542 489999
Q ss_pred cCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC
Q 009435 275 VDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 275 ~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
+.+.+-...-.. ......++.+ ..++..++.||.+..
T Consensus 277 ~~~~~~~~~~~~-----h~~~v~~v~~--s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 277 VGTRTCVHTFFD-----HQDQVWGVKY--NGNGSKIVSVGDDQE 313 (321)
T ss_dssp TTTTEEEEEECC-----CSSCEEEEEE--CTTSSEEEEEETTCC
T ss_pred CCCCEEEEEEcC-----CCCcEEEEEE--CCCCCEEEEEeCCCe
Confidence 987653322111 1111222233 345666777776653
No 49
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.26 E-value=0.74 Score=50.63 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=73.1
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccCCC--C---CCCCCeEEEEECCEEEEEcCCCCCCCCCC
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEG--P---EAREGHSAALVGKRLFIFGGCGKSSNTND 161 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~--p---~~r~~hs~~~~~~~lyv~GG~~~~~~~~~ 161 (535)
+-++.++.||+... ...++.+|..|.+ |+........ + ......+.++.+++||+...
T Consensus 72 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--------- 136 (677)
T 1kb0_A 72 TPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------- 136 (677)
T ss_dssp CCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---------
Confidence 34567999999875 2579999998875 8753311000 0 00122345567888888644
Q ss_pred ceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEee
Q 009435 162 EVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (535)
Q Consensus 162 ~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~ 233 (535)
...++.+|..+. .|+.-.............+.++.++.+|+-.+... ......++.||.++++ |+.-.
T Consensus 137 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 137 ---DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp ---TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 246899999876 48775420111101122233456888877543221 1134569999998775 87654
No 50
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.20 E-value=0.85 Score=49.02 Aligned_cols=120 Identities=9% Similarity=0.128 Sum_probs=67.0
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEc-CCC--eEEEeeccCC--CCCC---CCceEEEEECCEEEEEcCCCCCCCCCcEEE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDT-VNQ--TWSQPVIKGS--PPTP---RDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~-~t~--~W~~l~~~g~--~P~~---R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
++.||+.... ...++++|. .++ .|+.-..... .+.. ....+.+..+++||+... -..+++
T Consensus 62 ~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLA 129 (571)
T ss_dssp TTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEE
T ss_pred CCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEE
Confidence 5678887552 246999998 665 6886221100 0000 112344567899998753 246999
Q ss_pred EECCCC--eEEeccccCCCCCC-CCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEec
Q 009435 115 LDTSSH--TWISPSVRGEGPEA-REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRAT 182 (535)
Q Consensus 115 yd~~t~--~W~~~~~~g~~p~~-r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~ 182 (535)
+|..|. .|+.... ..+.. ....+.++.++.+|+-.+.. +......++.||..+. .|+.-.
T Consensus 130 lD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~------~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 130 LDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGA------ELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCG------GGTCCCEEEEEETTTCCEEEEEES
T ss_pred EECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCC------ccCCCCEEEEEECCCCcEEEEEcc
Confidence 999886 4875321 11100 11223345688887754411 0112357899999865 587653
No 51
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.15 E-value=0.91 Score=46.28 Aligned_cols=184 Identities=17% Similarity=0.183 Sum_probs=98.7
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
++ .++.|+.+ ..+.+||..+.+-... .......-.+....+.+++.|+.+ ..+.+||..+.+-
T Consensus 129 g~-~l~sg~~d------g~i~vwd~~~~~~~~~-----~~~h~~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~ 191 (445)
T 2ovr_B 129 GN-RIVSGSDD------NTLKVWSAVTGKCLRT-----LVGHTGGVWSSQMRDNIIISGSTD-----RTLKVWNAETGEC 191 (445)
T ss_dssp TT-EEEEEETT------SCEEEEETTTCCEEEE-----CCCCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTTEE
T ss_pred CC-EEEEEECC------CcEEEEECCCCcEEEE-----EcCCCCCEEEEEecCCEEEEEeCC-----CeEEEEECCcCcE
Confidence 44 45556643 4588999887764431 111122223333445577777654 3588999988764
Q ss_pred EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCE
Q 009435 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK 202 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~ 202 (535)
...- ............++..++.|+. ...+.++|+.+.+-...-.. ......++..++.
T Consensus 192 ~~~~-----~~h~~~v~~~~~~~~~l~s~s~-----------dg~i~~wd~~~~~~~~~~~~-----~~~~v~~~~~~~~ 250 (445)
T 2ovr_B 192 IHTL-----YGHTSTVRCMHLHEKRVVSGSR-----------DATLRVWDIETGQCLHVLMG-----HVAAVRCVQYDGR 250 (445)
T ss_dssp EEEE-----CCCSSCEEEEEEETTEEEEEET-----------TSEEEEEESSSCCEEEEEEC-----CSSCEEEEEECSS
T ss_pred EEEE-----CCCCCcEEEEEecCCEEEEEeC-----------CCEEEEEECCCCcEEEEEcC-----CcccEEEEEECCC
Confidence 3221 1111122233334555666663 24578888877653332211 1112233444777
Q ss_pred EEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 203 IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 203 lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
.++.|+.++ .+.+||+.+.+-...-. .......++..++..++.|+.+ ..+.+||+.+..-.
T Consensus 251 ~l~~~~~dg------~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 251 RVVSGAYDF------MVKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLD------TSIRVWDVETGNCI 312 (445)
T ss_dssp CEEEEETTS------CEEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETT------SCEEEEETTTCCEE
T ss_pred EEEEEcCCC------EEEEEECCCCcEeEEec-----CCCCceEEEEECCCEEEEEeCC------CeEEEEECCCCCEE
Confidence 777877653 48889987765332211 1111223334477777777754 34899999887543
No 52
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.13 E-value=0.19 Score=51.61 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=106.5
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CC-EEEEEcCCCCCCCCCcEEEEECC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
++++.| ++++.+.. ...++++|..+++...+. ..+ ....+.+.. ++ +|++.+..++ ...++++|+.
T Consensus 188 pdg~~l-a~~s~~~~---~~~i~~~d~~tg~~~~l~---~~~--~~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~ 255 (415)
T 2hqs_A 188 PDGSKL-AYVTFESG---RSALVIQTLANGAVRQVA---SFP--RHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLA 255 (415)
T ss_dssp TTSSEE-EEEECTTS---SCEEEEEETTTCCEEEEE---CCS--SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETT
T ss_pred CCCCEE-EEEEecCC---CcEEEEEECCCCcEEEee---cCC--CcccCEEEcCCCCEEEEEEecCC---CceEEEEECC
Confidence 445544 44443321 257999999988877654 111 112222222 34 4555554322 2479999999
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEE
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 197 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~ 197 (535)
+.+...+.. .. ......+.. +++.+++++.. .. ...++++|+.+..-..+... ......++
T Consensus 256 ~~~~~~l~~---~~--~~~~~~~~spdg~~l~~~s~~-----~g---~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~ 317 (415)
T 2hqs_A 256 SGQIRQVTD---GR--SNNTEPTWFPDSQNLAFTSDQ-----AG---RPQVYKVNINGGAPQRITWE-----GSQNQDAD 317 (415)
T ss_dssp TCCEEECCC---CS--SCEEEEEECTTSSEEEEEECT-----TS---SCEEEEEETTSSCCEECCCS-----SSEEEEEE
T ss_pred CCCEEeCcC---CC--CcccceEECCCCCEEEEEECC-----CC---CcEEEEEECCCCCEEEEecC-----CCcccCeE
Confidence 887755431 11 111122222 45544544411 01 24689999988765554321 11112222
Q ss_pred e-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecC
Q 009435 198 S-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (535)
Q Consensus 198 ~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (535)
. -+++.+++++.... ...++++|+.+.+...+... ......+..-+++.+++++.... ...||++|+.
T Consensus 318 ~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~s~~~~---~~~l~~~d~~ 386 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSST-----FLDETPSLAPNGTMVIYSSSQGM---GSVLNLVSTD 386 (415)
T ss_dssp ECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCCS-----SSCEEEEECTTSSEEEEEEEETT---EEEEEEEETT
T ss_pred ECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecCC-----CCcCCeEEcCCCCEEEEEEcCCC---ccEEEEEECC
Confidence 2 25555555554321 24699999999888765431 11222222335666666664332 2369999998
Q ss_pred CCcEEEEe
Q 009435 277 SGLWTKVI 284 (535)
Q Consensus 277 ~~~W~~l~ 284 (535)
......+.
T Consensus 387 g~~~~~l~ 394 (415)
T 2hqs_A 387 GRFKARLP 394 (415)
T ss_dssp SCCEEECC
T ss_pred CCcEEEee
Confidence 87766664
No 53
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.09 E-value=0.66 Score=47.40 Aligned_cols=222 Identities=9% Similarity=-0.003 Sum_probs=113.5
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (535)
..++++|.....-..+... . ....+..+ +++.+++++.++. ...++++|+.+.+...+.. .+. ..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~---~---~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~---~~~--~~ 225 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS---P---QPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVAS---FPR--HN 225 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE---S---SCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEEC---CSS--CE
T ss_pred ceEEEEcCCCCCCEEEeCC---C---CcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeec---CCC--cc
Confidence 5788999876554544311 0 11122222 4555555554332 2579999999987765441 111 11
Q ss_pred eEEEEE-CCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCc
Q 009435 138 HSAALV-GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDY 214 (535)
Q Consensus 138 hs~~~~-~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~ 214 (535)
.+.+.. +++ |++.+..+ -...++++|+.+.+...+... . ......+. -+++.+++++....
T Consensus 226 ~~~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~~l~~~---~--~~~~~~~~spdg~~l~~~s~~~g-- 289 (415)
T 2hqs_A 226 GAPAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIRQVTDG---R--SNNTEPTWFPDSQNLAFTSDQAG-- 289 (415)
T ss_dssp EEEEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEEECCCC---S--SCEEEEEECTTSSEEEEEECTTS--
T ss_pred cCEEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEEeCcCC---C--CcccceEECCCCCEEEEEECCCC--
Confidence 222222 344 54444321 124699999998887666421 1 11112222 25555555443221
Q ss_pred ccCceEEEECCCCcEEEeecCCCCCCCceeeEEE-EECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCc
Q 009435 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSAR 293 (535)
Q Consensus 215 ~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r 293 (535)
...++.+|+.+.+-..+.. .......++ .-+++.+++++..+. ...++++|+.+.....+... .
T Consensus 290 -~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~~---~--- 354 (415)
T 2hqs_A 290 -RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSST---F--- 354 (415)
T ss_dssp -SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCCS---S---
T ss_pred -CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecCC---C---
Confidence 2469999998877554432 112222222 234555555554321 34699999999887655332 1
Q ss_pred eeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEecc
Q 009435 294 FSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (535)
Q Consensus 294 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (535)
......+ ..++..+++++.+.. ...+|.++..
T Consensus 355 -~~~~~~~--spdg~~l~~~s~~~~---~~~l~~~d~~ 386 (415)
T 2hqs_A 355 -LDETPSL--APNGTMVIYSSSQGM---GSVLNLVSTD 386 (415)
T ss_dssp -SCEEEEE--CTTSSEEEEEEEETT---EEEEEEEETT
T ss_pred -CcCCeEE--cCCCCEEEEEEcCCC---ccEEEEEECC
Confidence 1122222 345666666654332 2357777754
No 54
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.06 E-value=0.36 Score=46.91 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=77.9
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-C-CEEEEEcCCCCCCCCCcEEEEECC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-G-ENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
..++.+|+.++.+ +.++++|..+++....-.. +....-+..+.. + ..+|+.+.. ...+++||+.
T Consensus 8 ~~~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~ 73 (349)
T 1jmx_B 8 KAGHEYMIVTNYP------NNLHVVDVASDTVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLD 73 (349)
T ss_dssp CTTCEEEEEEETT------TEEEEEETTTTEEEEEEEC---SSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETT
T ss_pred cCCCEEEEEeCCC------CeEEEEECCCCcEEEEEec---CCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCC
Confidence 3456788877642 5799999998876542211 110012233333 3 357877643 2579999999
Q ss_pred CCeEEeccccCCCCC--CCCCeEEEEE-CC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 119 SHTWISPSVRGEGPE--AREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 119 t~~W~~~~~~g~~p~--~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
+.+....-..+..+. ...-+.++.. ++ .||+.+..............+.++++|+.+.+-.+.......+ +...
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~ 151 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVY 151 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCC
T ss_pred CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--Cccc
Confidence 887543221111110 1111223332 34 4555442000000000000257899998774321110000111 1222
Q ss_pred eEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEE
Q 009435 195 TCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (535)
Q Consensus 195 s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~ 231 (535)
+++. -++++|+.++ +++++|+.+.+-..
T Consensus 152 ~~~~s~dg~l~~~~~---------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 152 LMRAADDGSLYVAGP---------DIYKMDVKTGKYTV 180 (349)
T ss_dssp CEEECTTSCEEEESS---------SEEEECTTTCCEEE
T ss_pred ceeECCCCcEEEccC---------cEEEEeCCCCceec
Confidence 2322 3556777422 38889988776544
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.04 E-value=1.3 Score=43.84 Aligned_cols=227 Identities=9% Similarity=0.028 Sum_probs=106.4
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~ 113 (535)
.++.+..++.+++.|+.+ ..+.+||........+. . ....-.++.+ +++.++.|+.+ ..+.
T Consensus 112 ~~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~---~---~~~~v~~~~~~~~~~~l~~~~~d-----~~i~ 174 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVEN------GELRLWNKTGALLNVLN---F---HRAPIVSVKWNKDGTHIISMDVE-----NVTI 174 (425)
T ss_dssp EEEEECTTSSEEEEEETT------SCEEEEETTSCEEEEEC---C---CCSCEEEEEECTTSSEEEEEETT-----CCEE
T ss_pred EEEEEcCCCCEEEEEeCC------CeEEEEeCCCCeeeecc---C---CCccEEEEEECCCCCEEEEEecC-----CeEE
Confidence 344444444466666643 35788885444444332 1 1111222222 45566666643 4588
Q ss_pred EEECCCCeEEeccccCCCC-----------CCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 114 ILDTSSHTWISPSVRGEGP-----------EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p-----------~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
+||..+.+....-.....+ ....-.+++...+..++.|+. ...+.+||+.+..-...-
T Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~i~~~d~~~~~~~~~~ 243 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-----------KGAIFVYQITEKTPTGKL 243 (425)
T ss_dssp EEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG-----------GGCEEEEETTCSSCSEEE
T ss_pred EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC-----------CCeEEEEEcCCCceeeee
Confidence 9998887654322110110 000022233333445666662 356888998765322211
Q ss_pred cCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccC
Q 009435 183 TSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 261 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~ 261 (535)
. .....-.+++.. ++.+++.|+.++ .+.+||+.+.+....-. .....-.++....+.+++.|+..
T Consensus 244 ~----~~~~~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~d 309 (425)
T 1r5m_A 244 I----GHHGPISVLEFNDTNKLLLSASDDG------TLRIWHGGNGNSQNCFY----GHSQSIVSASWVGDDKVISCSMD 309 (425)
T ss_dssp C----CCSSCEEEEEEETTTTEEEEEETTS------CEEEECSSSBSCSEEEC----CCSSCEEEEEEETTTEEEEEETT
T ss_pred c----cCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCCccceEec----CCCccEEEEEECCCCEEEEEeCC
Confidence 0 011111222222 556777777543 48888887654322211 11112233333333366666643
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
..+.+||+.+..-........ .......+ ..++.+++.|+.+.
T Consensus 310 ------~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~--s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 310 ------GSVRLWSLKQNTLLALSIVDG-----VPIFAGRI--SQDGQKYAVAFMDG 352 (425)
T ss_dssp ------SEEEEEETTTTEEEEEEECTT-----CCEEEEEE--CTTSSEEEEEETTS
T ss_pred ------CcEEEEECCCCcEeEecccCC-----ccEEEEEE--cCCCCEEEEEECCC
Confidence 358999998775433322211 11222222 34566777776543
No 56
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.99 E-value=0.46 Score=46.58 Aligned_cols=209 Identities=15% Similarity=0.146 Sum_probs=96.7
Q ss_pred EECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccc
Q 009435 48 VFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSV 127 (535)
Q Consensus 48 i~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~ 127 (535)
.+|.+.......-.+|.+|..++++..+........| ...+..-+++||+.+... .-..+++||+.+.+++.+..
T Consensus 6 ~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p--~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 6 LFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNP--TYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCC--CCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEE
T ss_pred EEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCc--ceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeee
Confidence 4454433222223577888888888765422222111 112222267777775321 12568999998888765542
Q ss_pred cCCCCCCCCCeEEEEECC-EEEEEcCCCCCCCCCCceeeeeEEEEECC-CccEEEec---cCCCCCCCCC----ceeEEe
Q 009435 128 RGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRAT---TSGNPPSARD----SHTCSS 198 (535)
Q Consensus 128 ~g~~p~~r~~hs~~~~~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~-t~~W~~~~---~~~~~p~~r~----~~s~~~ 198 (535)
... ....-.+.+..-++ .||+.+.. ...+.+||+. ......+. ..+..|.+|. .+.++.
T Consensus 81 ~~~-~~~~p~~~a~spdg~~l~~~~~~-----------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 148 (347)
T 3hfq_A 81 VVA-PGTPPAYVAVDEARQLVYSANYH-----------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL 148 (347)
T ss_dssp EEE-ESCCCSEEEEETTTTEEEEEETT-----------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE
T ss_pred eec-CCCCCEEEEECCCCCEEEEEeCC-----------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE
Confidence 100 11111222223334 46666531 1346677764 33333332 2222222111 222333
Q ss_pred e-CCEEEEEecCCCCCcccCceEEEECC-CCcEEEeecCCCCCCCceeeEEEEECC-EEEEEeccCCCCCccCcEEEEec
Q 009435 199 W-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQNLYDDLYMIDV 275 (535)
Q Consensus 199 ~-~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~v~~~g~~p~~R~~hs~v~~~~-~iyv~GG~~~~~~~~~dv~~yd~ 275 (535)
. ++++|+.+..+ +.+.+||+. +.+...+......+.....+.+..-++ .+|+.+... +.+.+|++
T Consensus 149 spdg~l~v~~~~~------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~------~~v~v~~~ 216 (347)
T 3hfq_A 149 TPDNRLAVIDLGS------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS------SQIASLKY 216 (347)
T ss_dssp CTTSCEEEEETTT------TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------TEEEEEEE
T ss_pred CCCCcEEEEeCCC------CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC------CEEEEEEe
Confidence 2 55677664422 358888887 566554432111111111222222244 477765432 34566665
Q ss_pred C--CCcEEEEee
Q 009435 276 D--SGLWTKVIT 285 (535)
Q Consensus 276 ~--~~~W~~l~~ 285 (535)
. ++.+..+..
T Consensus 217 ~~~~g~~~~~~~ 228 (347)
T 3hfq_A 217 DTQTGAFTQLGI 228 (347)
T ss_dssp ETTTTEEEEEEE
T ss_pred cCCCCceEEeee
Confidence 5 577665543
No 57
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.96 E-value=1.1 Score=42.34 Aligned_cols=230 Identities=10% Similarity=0.096 Sum_probs=115.6
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCC-CCceEEEEE--CCEEEEEcCCCCCCCCCcE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~ 112 (535)
..+++..++.+|+.... ...+.+||+.......+...+..+.. ..-++++.. ++++|+.+.. ....+
T Consensus 33 ~~v~~~~~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~~~~i 102 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTN------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTHQI 102 (286)
T ss_dssp EEEEECTTCCEEEEEGG------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGCEE
T ss_pred ceEEECCCCCEEEEECC------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----CCCEE
Confidence 34455444458886542 24689999875544444322211111 122344442 6789988632 12468
Q ss_pred EEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 113 ~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
.+||.....-..... .....-+.++.. ++++|+.... .+.+++||+.......+...+...
T Consensus 103 ~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~g~~~~~~~~~~~~~--- 164 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK-----------VMRVIIFDQNGNVLHKFGCSKHLE--- 164 (286)
T ss_dssp EEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT-----------TTEEEEECTTSCEEEEEECTTTCS---
T ss_pred EEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC-----------CCEEEEEcCCCCEEEEeCCCCccC---
Confidence 899955443333221 111111233333 4678887542 246888997765554443211111
Q ss_pred CceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCc
Q 009435 192 DSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 192 ~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~d 269 (535)
.-..++.. ++.+|+.... .+.+.+||+.......+...+.... -..++. -++++||...... ..
T Consensus 165 ~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g~~~~---p~~i~~d~~G~l~v~~~~~~-----~~ 230 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGITNY---PIGVGINSNGEILIADNHNN-----FN 230 (286)
T ss_dssp SEEEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTTSCS---EEEEEECTTCCEEEEECSSS-----CE
T ss_pred CcEEEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCCccCC---CcEEEECCCCCEEEEeCCCC-----EE
Confidence 11233333 5788887542 3459999987665555543221111 122333 2567888764321 15
Q ss_pred EEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEc
Q 009435 270 LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 313 (535)
Q Consensus 270 v~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~G 313 (535)
|.+||+....-..+........+ .+..+ ..++.+|+..
T Consensus 231 i~~~~~~g~~~~~~~~~~~~~~~----~~i~~--~~~g~l~vs~ 268 (286)
T 1q7f_A 231 LTIFTQDGQLISALESKVKHAQC----FDVAL--MDDGSVVLAS 268 (286)
T ss_dssp EEEECTTSCEEEEEEESSCCSCE----EEEEE--ETTTEEEEEE
T ss_pred EEEECCCCCEEEEEcccCCCCcc----eeEEE--CCCCcEEEEC
Confidence 89999766544444432211111 12223 2467888873
No 58
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.1 Score=58.06 Aligned_cols=191 Identities=9% Similarity=0.020 Sum_probs=96.1
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--C--CEEEEEcCCCCCCCCCcEEEEECCC
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G--ENLYVFGGTDGMNPLRDLHILDTSS 119 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~~Iyv~GG~~~~~~~~~~~~yd~~t 119 (535)
+.+++.||.+ ..+.+||....++..+.. .......-.++.+ + +.+++.|+.+ ..+.+||+.+
T Consensus 21 g~~latg~~d------g~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~ 86 (753)
T 3jro_A 21 GKRLATCSSD------KTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEEN 86 (753)
T ss_dssp SCCEEEEETT------TEEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEET
T ss_pred CCeEEEEECC------CcEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCC
Confidence 3456666643 458888888777766542 1111222233333 2 5677777764 3588999989
Q ss_pred CeEEeccccCCCCCCCCCeEEEEE-C--CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeE
Q 009435 120 HTWISPSVRGEGPEAREGHSAALV-G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (535)
Q Consensus 120 ~~W~~~~~~g~~p~~r~~hs~~~~-~--~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~ 196 (535)
++|........ ....-.+++.. + +.+++.|+.+ ..+.+||+.+..-.........+ ....++
T Consensus 87 ~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs~d-----------g~I~vwdl~~~~~~~~~~~~~~~--~~v~~l 151 (753)
T 3jro_A 87 GRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSD-----------GKVSVVEFKENGTTSPIIIDAHA--IGVNSA 151 (753)
T ss_dssp TEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETT-----------SEEEEEECCSSSCCCCEEEECCS--SCEEEE
T ss_pred CcccccccccC--CCCCeEEEEECCCCCCCEEEEEeCC-----------CcEEEEEeecCCCcceeEeecCC--CceEEE
Confidence 88765543211 11111222222 2 5677777732 35777787655211100000000 011112
Q ss_pred Eee--------------CCEEEEEecCCCCCcccCceEEEECCCC--cEEEeecCCCCCC-CceeeEEEEE-C---CEEE
Q 009435 197 SSW--------------KNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLS-PRAGHSTVAF-G---KNLF 255 (535)
Q Consensus 197 ~~~--------------~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~v~~~g~~p~-~R~~hs~v~~-~---~~iy 255 (535)
... ++.+++.|+.++ .+.+||+.+. .+..+.. ... ...-.+++.. + +.++
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~~~~l 222 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSPTVLLRSYL 222 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTS------CEEEEEEETTTTEEEEEEE---ECCCSSCEEEEEECCCCSSSEEE
T ss_pred EecCcccccccccccCCCCCEEEEEECCC------eEEEEeccCCcccceeeee---ecCCCCcEEEEEeccCCCCCCEE
Confidence 111 356777777654 3777776543 3444432 111 1111222222 3 6788
Q ss_pred EEeccCCCCCccCcEEEEecCCC
Q 009435 256 VFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 256 v~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
+.||... .+.+||+.+.
T Consensus 223 ~s~s~Dg------~I~iwd~~~~ 239 (753)
T 3jro_A 223 ASVSQDR------TCIIWTQDNE 239 (753)
T ss_dssp EEEESSS------CEEEEEESSS
T ss_pred EEEecCC------EEEEecCCCC
Confidence 8888643 3888888765
No 59
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.93 E-value=1.4 Score=43.23 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=38.4
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECC-EEEEEcCCCCCCCCCcEEEEECCCCeEE
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDTSSHTWI 123 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~Iyv~GG~~~~~~~~~~~~yd~~t~~W~ 123 (535)
..+++|.+.......-.+|.+|..+.++..+... . .....+.+..-++ .||+.+..+.....-.+|.+|..+.+.+
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~--~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-E--VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-E--CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-c--CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3445676654332223456667788888776532 1 1111222222234 4776654321111223455566667776
Q ss_pred ecc
Q 009435 124 SPS 126 (535)
Q Consensus 124 ~~~ 126 (535)
.+.
T Consensus 91 ~~~ 93 (361)
T 3scy_A 91 LLN 93 (361)
T ss_dssp EEE
T ss_pred Eee
Confidence 554
No 60
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.92 E-value=1.3 Score=42.53 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=96.2
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
+....++.+++.|+.+ ..+.+||..+.+-...- .+. ...-.++.+ ++.+++.|+.+ ..+.+|
T Consensus 71 ~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~-~~~----~~~v~~~~~~~~~~~l~s~~~d-----~~i~iw 134 (312)
T 4ery_A 71 VAWSSDSNLLVSASDD------KTLKIWDVSSGKCLKTL-KGH----SNYVFCCNFNPQSNLIVSGSFD-----ESVRIW 134 (312)
T ss_dssp EEECTTSSEEEEEETT------SEEEEEETTTCCEEEEE-ECC----SSCEEEEEECSSSSEEEEEETT-----SCEEEE
T ss_pred EEEcCCCCEEEEECCC------CEEEEEECCCCcEEEEE-cCC----CCCEEEEEEcCCCCEEEEEeCC-----CcEEEE
Confidence 3333333355556533 45788888776543311 111 111122222 45567777754 358899
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
|+.+.+-...- +........+.. ++.+++.|+.+ ..+.+||+.+.+....-.. .......
T Consensus 135 d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~wd~~~~~~~~~~~~--~~~~~~~ 196 (312)
T 4ery_A 135 DVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYD-----------GLCRIWDTASGQCLKTLID--DDNPPVS 196 (312)
T ss_dssp ETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEECC--SSCCCEE
T ss_pred ECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceeeEEec--cCCCceE
Confidence 98876543211 111111222222 45677777732 3578889887654332211 0111111
Q ss_pred eeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEE-EECCEEEEEeccCCCCCccCcEEE
Q 009435 194 HTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 194 ~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
......++..++.|+.+ +.+.+||+.+.+-...-. +............ ..++.+++.|+.+ ..|.+
T Consensus 197 ~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~d------g~i~v 263 (312)
T 4ery_A 197 FVKFSPNGKYILAATLD------NTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSED------NLVYI 263 (312)
T ss_dssp EEEECTTSSEEEEEETT------TEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTT------SCEEE
T ss_pred EEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCC------CEEEE
Confidence 11122256667777654 348899998775433221 1111111111222 2356677777753 34899
Q ss_pred EecCCCcE
Q 009435 273 IDVDSGLW 280 (535)
Q Consensus 273 yd~~~~~W 280 (535)
||+.+..-
T Consensus 264 wd~~~~~~ 271 (312)
T 4ery_A 264 WNLQTKEI 271 (312)
T ss_dssp EETTTCCE
T ss_pred EECCCchh
Confidence 99987753
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.89 E-value=1.2 Score=43.64 Aligned_cols=70 Identities=17% Similarity=-0.001 Sum_probs=38.8
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCC--
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS-- 277 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~-- 277 (535)
++.+++.|+.+ ..+.+||+.+.+-...-. .........+..-++.+++.| . + ..+.+||+.+
T Consensus 213 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~-d-----~~i~i~~~~~~~ 276 (372)
T 1k8k_C 213 NGSRVAWVSHD------STVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAG-H-D-----CFPVLFTYDSAA 276 (372)
T ss_dssp SSSEEEEEETT------TEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEE-T-T-----SSCEEEEEETTT
T ss_pred CCCEEEEEeCC------CEEEEEECCCCceeEEEc---cCCCCeEEEEEecCCCEEEEE-e-C-----CeEEEEEccCcC
Confidence 55677777644 348889987765333221 111111222233466666655 3 2 2478888888
Q ss_pred CcEEEEee
Q 009435 278 GLWTKVIT 285 (535)
Q Consensus 278 ~~W~~l~~ 285 (535)
+.|..+..
T Consensus 277 ~~~~~~~~ 284 (372)
T 1k8k_C 277 GKLSFGGR 284 (372)
T ss_dssp TEEEECCC
T ss_pred ceEEEeec
Confidence 88877643
No 62
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.84 E-value=0.35 Score=53.97 Aligned_cols=182 Identities=9% Similarity=0.015 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (535)
.-+++||+.+++|.........+.+.....+... ++.|++-.- -.-+++||+.+++++.......++....
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i- 541 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF------GGGVGIYTPDMQLVRKFNQYEGFCSNTI- 541 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES------SSCEEEECTTCCEEEEECTTTTCSCSCE-
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc------CCCEEEEeCCCCeEEEccCCCCCCCCee-
Confidence 3589999999888776422111111111122222 466776531 1348999999999887653222322111
Q ss_pred eEEEEE-CCEEEEEcCCCCCCCCCCceeeeeE-EEEECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCc
Q 009435 138 HSAALV-GKRLFIFGGCGKSSNTNDEVYYNDL-YILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDY 214 (535)
Q Consensus 138 hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v-~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~ 214 (535)
.+++.. ++.|++-.. +.+ ++||+.+.++........+|.... .+++.. ++.|++.+.
T Consensus 542 ~~i~~d~~g~lWi~T~-------------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~------ 601 (781)
T 3v9f_A 542 NQIYRSSKGQMWLATG-------------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN------ 601 (781)
T ss_dssp EEEEECTTSCEEEEET-------------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS------
T ss_pred EEEEECCCCCEEEEEC-------------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC------
Confidence 122222 356777432 346 889999888887764433443332 333333 577877642
Q ss_pred ccCceEEEECCCCcEEEeecCCCCCCCcee-eEEEEECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAG-HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 215 ~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~-hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
+.+.+||+++.+++......-++..... .+++...+..+.|||.. .+.+||++.
T Consensus 602 --~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~-------Gl~~f~p~~ 656 (781)
T 3v9f_A 602 --TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSIN-------GLCFFNPDI 656 (781)
T ss_dssp --SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETT-------EEEEECSCC
T ss_pred --CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCC-------ceEEEChhh
Confidence 3489999999998887653334444333 33444434445556643 378888865
No 63
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.71 E-value=2.7 Score=46.18 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=71.8
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccCCC--CCC---CCCeEEEEECCEEEEEcCCCCCCCCCC
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEG--PEA---REGHSAALVGKRLFIFGGCGKSSNTND 161 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~--p~~---r~~hs~~~~~~~lyv~GG~~~~~~~~~ 161 (535)
+-++.+++||+... ...++.+|..|.+ |+........ +.. ....+.++.+++||+...
T Consensus 65 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--------- 129 (689)
T 1yiq_A 65 TPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--------- 129 (689)
T ss_dssp CCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred cCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---------
Confidence 33567999999864 2469999998764 8753211000 000 112234567888888653
Q ss_pred ceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEe
Q 009435 162 EVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 232 (535)
Q Consensus 162 ~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v 232 (535)
...++.+|..+. .|+.-.............+.++.++.+|+-.+.. ....-..++.||.++.+ |+.-
T Consensus 130 ---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 ---DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGA-EFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEE
T ss_pred ---CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCC-ccCCCCEEEEEECCCCcEEEEec
Confidence 246899999876 4887542111111112223455688887743221 11134569999998876 8865
No 64
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.70 E-value=1.4 Score=42.28 Aligned_cols=208 Identities=11% Similarity=0.030 Sum_probs=94.9
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcC--CCeEEEeeccCCCCCCCCceEEEEE-CC-EEEEEcCCCCCCCCCcE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Iyv~GG~~~~~~~~~~ 112 (535)
.+..++++.||+.+..+ ..+.+|+.. ++++..+... +....-..++.. ++ .||+.+..+ ..+
T Consensus 43 ~~~spdg~~l~~~~~~~------~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~-----~~i 108 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPE------FRVLAYRIAPDDGALTFAAES---ALPGSLTHISTDHQGQFVFVGSYNA-----GNV 108 (343)
T ss_dssp EEECTTSSEEEEEETTT------TEEEEEEECTTTCCEEEEEEE---ECSSCCSEEEECTTSSEEEEEETTT-----TEE
T ss_pred EEECCCCCEEEEeecCC------CeEEEEEecCCCCceeecccc---ccCCCCcEEEEcCCCCEEEEEecCC-----CeE
Confidence 44445666676654421 357777765 7777754321 111111222222 33 466665321 357
Q ss_pred EEEECCCCe-EEeccccCCCCCCCCCeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCC-ccEEEec--cCCC
Q 009435 113 HILDTSSHT-WISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWKRAT--TSGN 186 (535)
Q Consensus 113 ~~yd~~t~~-W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t-~~W~~~~--~~~~ 186 (535)
.+||+.+.. ........... .-+.++.. + +.||+.+.. ...+.+||+.+ .+...+. .. .
T Consensus 109 ~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~-~ 173 (343)
T 1ri6_A 109 SVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLWVPALK-----------QDRICLFTVSDDGHLVAQDPAEV-T 173 (343)
T ss_dssp EEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEEEEEGG-----------GTEEEEEEECTTSCEEEEEEEEE-E
T ss_pred EEEECCCCccccccccccCCC---CceEEEECCCCCEEEEecCC-----------CCEEEEEEecCCCceeeeccccc-c
Confidence 888874322 22222111111 12223332 3 357776521 24588889877 6665332 11 0
Q ss_pred CCCCCCceeEEee-C-CEEEEEecCCCCCcccCceEEEECC--CCcEEEeecCCCCCCC----ceeeEEEEE--CCEEEE
Q 009435 187 PPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVLSP----RAGHSTVAF--GKNLFV 256 (535)
Q Consensus 187 ~p~~r~~~s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~~v~~~g~~p~~----R~~hs~v~~--~~~iyv 256 (535)
.+....-..++.. + ..+|+.+..+ +.+.+||+. +.++..+......+.. .....++.. +..+|+
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~------~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELN------SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 247 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTT------TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCC------CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence 1111111122222 3 3576665432 357888884 4555433221112221 111123333 235666
Q ss_pred EeccCCCCCccCcEEEEecC--CCcEEEEee
Q 009435 257 FGGFTDSQNLYDDLYMIDVD--SGLWTKVIT 285 (535)
Q Consensus 257 ~GG~~~~~~~~~dv~~yd~~--~~~W~~l~~ 285 (535)
.+.. .+.+.+||+. +..+..+..
T Consensus 248 ~~~~------~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 248 CDRT------ASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EETT------TTEEEEEEECTTSCCEEEEEE
T ss_pred EecC------CCEEEEEEEcCCCCceEEeee
Confidence 5532 2358888887 556666654
No 65
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.61 E-value=0.98 Score=42.14 Aligned_cols=194 Identities=11% Similarity=0.064 Sum_probs=96.7
Q ss_pred ceEEEEEcCC-CeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCe
Q 009435 60 NQVHVFDTVN-QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGH 138 (535)
Q Consensus 60 ~~~~~yd~~t-~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~h 138 (535)
..++++|..+ .+...+.. +. ........+..-+++.+++++.... ....+|.++..+.....+... .. ..
T Consensus 62 ~~i~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~----~~--~~ 132 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKVDT-GF-ATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKN----LP--SY 132 (297)
T ss_dssp TEEEEEESSSCCSCEECCC-TT-CCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSS----SS--EE
T ss_pred CeEEEEeCCCCCCceEecc-cc-ccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecC----CC--cc
Confidence 4799999998 77666431 11 1111122222225555555553221 346799999887664443311 11 22
Q ss_pred EEEEE-CCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEec-CCCCCc
Q 009435 139 SAALV-GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGG-EDGHDY 214 (535)
Q Consensus 139 s~~~~-~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG-~~~~~~ 214 (535)
.++.. +++ |++.++.+ . ...+|.+|..+.....+... + . ....+.. -+++.+++.+ .++
T Consensus 133 ~~~~spdg~~l~~~~~~~------~---~~~l~~~~~~~~~~~~~~~~---~-~-~~~~~~~s~dg~~l~~~~~~~~--- 195 (297)
T 2ojh_A 133 WHGWSPDGKSFTYCGIRD------Q---VFDIYSMDIDSGVETRLTHG---E-G-RNDGPDYSPDGRWIYFNSSRTG--- 195 (297)
T ss_dssp EEEECTTSSEEEEEEEET------T---EEEEEEEETTTCCEEECCCS---S-S-CEEEEEECTTSSEEEEEECTTS---
T ss_pred ceEECCCCCEEEEEECCC------C---ceEEEEEECCCCcceEcccC---C-C-ccccceECCCCCEEEEEecCCC---
Confidence 22222 344 54444421 1 24688888887777665421 1 1 1122222 2454444443 332
Q ss_pred ccCceEEEECCCCcEEEeecCCCCCCCceeeEEE-EECCEEEEEeccCCCCC-----ccCcEEEEecCCCcEEEEee
Q 009435 215 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQN-----LYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 215 ~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyv~GG~~~~~~-----~~~dv~~yd~~~~~W~~l~~ 285 (535)
...+|.+++.+.....+... ......+. .-+++.+++++...... ....++++|+.+.....+..
T Consensus 196 -~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 196 -QMQIWRVRVDGSSVERITDS-----AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp -SCEEEEEETTSSCEEECCCC-----SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred -CccEEEECCCCCCcEEEecC-----CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 34688888777776665431 11111222 22455555555432111 12569999999888766653
No 66
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.58 E-value=1.8 Score=41.88 Aligned_cols=203 Identities=12% Similarity=0.097 Sum_probs=95.0
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
+.+..++.+++.|+.+ ..+.+||..+.+-...- ......-.++.+ +++.++.|+.+ ..+.+|
T Consensus 38 ~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw 101 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKD------SSASVWYSLNGERLGTL-----DGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLW 101 (369)
T ss_dssp EEECTTSCEEEEEESS------SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETT-----TEEEEE
T ss_pred EEEcCCCCEEEEEeCC------CEEEEEeCCCchhhhhh-----hhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEE
Confidence 3444344466666643 35889998876544321 111122222233 45666777654 368999
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc----cEEEeccCCC----
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF----VWKRATTSGN---- 186 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~----~W~~~~~~~~---- 186 (535)
|+.+.+....-. ....-.+++.. ++..++.++.. .......+.+||+.+. .+........
T Consensus 102 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 102 DVSNGQCVATWK-----SPVPVKRVEFSPCGNYFLAILDN------VMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp ETTTCCEEEEEE-----CSSCEEEEEECTTSSEEEEEECC------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred ECCCCcEEEEee-----cCCCeEEEEEccCCCEEEEecCC------ccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 998876543221 11111222222 34555555521 0011235666665432 1222110000
Q ss_pred CCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCC-CcEEE-eecCCCCCCCceeeEEEEE-CCEEEEEeccC
Q 009435 187 PPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKE-LNTSGMVLSPRAGHSTVAF-GKNLFVFGGFT 261 (535)
Q Consensus 187 ~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W~~-v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~ 261 (535)
.........++.+ ++.+++.|+.+ ..+.+||+.+ ..-.. +.. .. ..-.+++.. ++.+++.|+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYVDSIDL----HE-KSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEEEEEEC----CS-SCEEEEEECTTSSEEEEEETT
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeEEEEec----CC-CceeEEEECCCCCEEEEecCC
Confidence 0000001222222 55667777654 3488999987 33222 221 11 111222222 55666776643
Q ss_pred CCCCccCcEEEEecCCCcEEEEe
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~ 284 (535)
..+.+||+.+.......
T Consensus 240 ------~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 240 ------TNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp ------SEEEEEETTTCCEEEEE
T ss_pred ------ceEEEEECCCCceeeee
Confidence 34899999887655443
No 67
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.53 E-value=2 Score=42.12 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=87.2
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
+++ ++.|+.+ ..+.+||+.+.+-...- .+ ....-.+++.. ++.+++.|+.+ ..+.++|
T Consensus 154 ~~~-l~s~s~d-----~~i~~wd~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~l~sg~~d-----------~~v~~wd 212 (340)
T 1got_B 154 DNQ-IVTSSGD-----TTCALWDIETGQQTTTF-TG---HTGDVMSLSLAPDTRLFVSGACD-----------ASAKLWD 212 (340)
T ss_dssp TTE-EEEEETT-----SCEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----------SCEEEEE
T ss_pred CCc-EEEEECC-----CcEEEEECCCCcEEEEE-cC---CCCceEEEEECCCCCEEEEEeCC-----------CcEEEEE
Confidence 455 4455543 45889999887653321 11 11111122222 45677777742 3577888
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~- 250 (535)
+.+..-...-. .... .-.+++. .++.+++.|+.++ .+.+||+.+.+-...-. .+........+.+
T Consensus 213 ~~~~~~~~~~~---~h~~-~v~~v~~~p~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s 279 (340)
T 1got_B 213 VREGMCRQTFT---GHES-DINAICFFPNGNAFATGSDDA------TCRLFDLRADQELMTYS---HDNIICGITSVSFS 279 (340)
T ss_dssp TTTCSEEEEEC---CCSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC---CTTCCSCEEEEEEC
T ss_pred CCCCeeEEEEc---CCcC-CEEEEEEcCCCCEEEEEcCCC------cEEEEECCCCcEEEEEc---cCCcccceEEEEEC
Confidence 87665332210 0011 1122222 2567778887654 38889988765332221 1111112222222
Q ss_pred -CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC
Q 009435 251 -GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 251 -~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
++++++.|+.+ ..+.+||+.+..-...-.. .........+ ..++.+++.||.+..
T Consensus 280 ~~g~~l~~g~~d------~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~--s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 280 KSGRLLLAGYDD------FNCNVWDALKADRAGVLAG-----HDNRVSCLGV--TDDGMAVATGSWDSF 335 (340)
T ss_dssp TTSSEEEEEETT------SEEEEEETTTCCEEEEEEC-----CSSCEEEEEE--CTTSSCEEEEETTSC
T ss_pred CCCCEEEEECCC------CeEEEEEcccCcEeeEeec-----CCCcEEEEEE--cCCCCEEEEEcCCcc
Confidence 46677777653 3488999876542221111 0111122222 356777777876653
No 68
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.50 E-value=1.6 Score=40.67 Aligned_cols=192 Identities=11% Similarity=0.019 Sum_probs=95.5
Q ss_pred EEEEcCCCEEEE-ECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAIKGGRFLYV-FGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v~~~~~Iyi-~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
.+++..++.+|+ .... .+.+++||..+.....+.. ... ..-++++.. +++||+... ...+++
T Consensus 28 ~i~~~~~g~l~v~~~~~------~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~~~~g~l~v~~~------~~~i~~ 91 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGM------YGRVVKLATGSTGTTVLPF-NGL---YQPQGLAVDGAGTVYVTDF------NNRVVT 91 (270)
T ss_dssp EEEECTTCCEEEEECSS------SCEEEEECC-----EECCC-CSC---CSCCCEEECTTCCEEEEET------TTEEEE
T ss_pred ceEECCCCCEEEEccCC------CCcEEEecCCCcccceEee-CCc---CCcceeEECCCCCEEEEcC------CCEEEE
Confidence 334433345888 4332 2468899887766544321 111 112233333 467888764 246899
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
||+.+........ .....-..++.. ++++|+.... ...+++++..+......... .. ..-
T Consensus 92 ~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~-~~---~~p 152 (270)
T 1rwi_B 92 LAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----------NNRVVKLAAGSKTQTVLPFT-GL---NDP 152 (270)
T ss_dssp ECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----------GTEEEEECTTCCSCEECCCC-SC---CSC
T ss_pred EeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----------CCEEEEEECCCceeEeeccc-cC---CCc
Confidence 9988765433221 111122334433 4678887541 24578887766554433211 11 111
Q ss_pred eeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEE
Q 009435 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLY 271 (535)
Q Consensus 194 ~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~ 271 (535)
..++.. ++++|+.... .+.+.+||+.+..-......+ . ..-..++.. ++.+|+.... .+.|+
T Consensus 153 ~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~-~---~~p~~i~~d~~g~l~v~~~~------~~~v~ 216 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFTD-I---TAPWGIAVDEAGTVYVTEHN------TNQVV 216 (270)
T ss_dssp CCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCSS-C---CSEEEEEECTTCCEEEEETT------TSCEE
T ss_pred eeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeecccC-C---CCceEEEECCCCCEEEEECC------CCcEE
Confidence 233333 5678887542 245899998876644332211 1 112233333 3578876543 23489
Q ss_pred EEecCCCc
Q 009435 272 MIDVDSGL 279 (535)
Q Consensus 272 ~yd~~~~~ 279 (535)
+||+....
T Consensus 217 ~~~~~~~~ 224 (270)
T 1rwi_B 217 KLLAGSTT 224 (270)
T ss_dssp EECTTCSC
T ss_pred EEcCCCCc
Confidence 99987654
No 69
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.46 E-value=2.1 Score=41.85 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=106.6
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
+....++.+++.|+.+ ..+.++|..+.+-...- +.......++.+ ++++++.||.+ ..+.+|
T Consensus 61 ~~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d-----~~v~iw 124 (340)
T 1got_B 61 MHWGTDSRLLLSASQD------GKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGLD-----NICSIY 124 (340)
T ss_dssp EEECTTSSEEEEEETT------TEEEEEETTTCCEEEEE-----ECSSSCEEEEEECTTSSEEEEEETT-----CEEEEE
T ss_pred EEECCCCCEEEEEeCC------CcEEEEECCCCCcceEe-----ecCCccEEEEEECCCCCEEEEEeCC-----CeEEEE
Confidence 3333334456666644 45888898776543311 111111222222 45677777764 457888
Q ss_pred ECCCCe--EEecc-ccCCCCCCCCCeEEE-EECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 116 DTSSHT--WISPS-VRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 116 d~~t~~--W~~~~-~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
|+.+.. ..... ..+ ....-.++. ..++. ++.|+. ...+.++|+.+..-...-. ... .
T Consensus 125 ~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~-l~s~s~-----------d~~i~~wd~~~~~~~~~~~---~h~-~ 185 (340)
T 1got_B 125 NLKTREGNVRVSRELAG---HTGYLSCCRFLDDNQ-IVTSSG-----------DTTCALWDIETGQQTTTFT---GHT-G 185 (340)
T ss_dssp ETTTCSBSCEEEEEEEC---CSSCEEEEEEEETTE-EEEEET-----------TSCEEEEETTTTEEEEEEC---CCS-S
T ss_pred ECccCCCcceeEEEecC---CCccEEEEEECCCCc-EEEEEC-----------CCcEEEEECCCCcEEEEEc---CCC-C
Confidence 876642 11111 001 000111122 22445 444542 2457788888765433211 011 1
Q ss_pred CceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCc
Q 009435 192 DSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 192 ~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~d 269 (535)
...+++.. ++.+++.|+.++ .+.+||+.+..-...-. .... .-.+++. -++++++.|+.+. .
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~~---~h~~-~v~~v~~~p~~~~l~s~s~d~------~ 249 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTFT---GHES-DINAICFFPNGNAFATGSDDA------T 249 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEEEC---CCSS-CEEEEEECTTSSEEEEEETTS------C
T ss_pred ceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEEc---CCcC-CEEEEEEcCCCCEEEEEcCCC------c
Confidence 11222222 567888888654 38889988765333211 0111 1122222 2466777777542 4
Q ss_pred EEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 270 LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 270 v~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
+.+||+.+..-...... +..........+ ..++.+++.|+.+.
T Consensus 250 v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~--s~~g~~l~~g~~d~ 292 (340)
T 1got_B 250 CRLFDLRADQELMTYSH---DNIICGITSVSF--SKSGRLLLAGYDDF 292 (340)
T ss_dssp EEEEETTTTEEEEEECC---TTCCSCEEEEEE--CTTSSEEEEEETTS
T ss_pred EEEEECCCCcEEEEEcc---CCcccceEEEEE--CCCCCEEEEECCCC
Confidence 88999887653222111 111112233333 35677777777654
No 70
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.39 E-value=2 Score=41.16 Aligned_cols=213 Identities=15% Similarity=0.109 Sum_probs=104.6
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCC-CCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC-
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPT-PRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH- 120 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~-~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~- 120 (535)
.+++.|..+ +.+.++|.+++ .|+... +. ....+..+.-+++||+.+ -+.+++||+ +.
T Consensus 6 ~~lv~~~~~------~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~ 66 (276)
T 3no2_A 6 HLLVGGSGW------NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSY-------SKGAKMITR-DGR 66 (276)
T ss_dssp EEEEECTTC------SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSC
T ss_pred cEEEeeCCC------CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCC
Confidence 466665532 56889998776 466522 11 122233333477888843 246999998 44
Q ss_pred -eEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc-cEEEeccCC-CCCCCCCceeE
Q 009435 121 -TWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSG-NPPSARDSHTC 196 (535)
Q Consensus 121 -~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~-~W~~~~~~~-~~p~~r~~~s~ 196 (535)
.|+... +.....+++... ++++++...- ....++.+|++.. .|+.....+ ..+........
T Consensus 67 ~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~----------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 67 ELWNIAA-----PAGCEMQTARILPDGNALVAWCG----------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp EEEEEEC-----CTTCEEEEEEECTTSCEEEEEES----------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred EEEEEcC-----CCCccccccEECCCCCEEEEecC----------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCce
Confidence 365422 111122333333 4566665431 0245788887544 344321111 01111111223
Q ss_pred EeeCCEEEEEecCCCCCcccCceEEEECCCC-cEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEec
Q 009435 197 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (535)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (535)
...++.+++.... ...+.+||++.. .|+.-.. + .+ ..+....++.++|.+... ..++.+|+
T Consensus 132 ~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~-~---~~--~~~~~~~~g~~~v~~~~~------~~v~~~d~ 193 (276)
T 3no2_A 132 KNKKGNYLVPLFA------TSEVREIAPNGQLLNSVKLS-G---TP--FSSAFLDNGDCLVACGDA------HCFVQLNL 193 (276)
T ss_dssp ECTTSCEEEEETT------TTEEEEECTTSCEEEEEECS-S---CC--CEEEECTTSCEEEECBTT------SEEEEECT
T ss_pred ECCCCCEEEEecC------CCEEEEECCCCCEEEEEECC-C---Cc--cceeEcCCCCEEEEeCCC------CeEEEEeC
Confidence 3345666665432 235899998733 3654321 1 11 122333467787776542 34999999
Q ss_pred CCCc--EEEEeeCCCCCCCce-eeeeeeecccCCCEEEEEc
Q 009435 276 DSGL--WTKVITTGEGPSARF-SVAGDCLDPLKGGVLVFIG 313 (535)
Q Consensus 276 ~~~~--W~~l~~~~~~p~~r~-~~~~~~~~~~~~~~l~v~G 313 (535)
.+++ |+.-... .+..+. ...+..+ ..++.+||..
T Consensus 194 ~tG~~~w~~~~~~--~~~~~l~~~~~~~~--~~~G~i~v~~ 230 (276)
T 3no2_A 194 ESNRIVRRVNAND--IEGVQLFFVAQLFP--LQNGGLYICN 230 (276)
T ss_dssp TTCCEEEEEEGGG--SBSCCCSEEEEEEE--CTTSCEEEEE
T ss_pred cCCcEEEEecCCC--CCCccccccccceE--cCCCCEEEEe
Confidence 9664 5543211 111122 2222233 4577888765
No 71
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.37 E-value=2.9 Score=46.47 Aligned_cols=186 Identities=12% Similarity=0.130 Sum_probs=102.0
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEE
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA 140 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~ 140 (535)
.+.+||..+.++..+......+......-+..-++.|++... +.+++||..++++..... ..+....-.++
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-------~gl~~~~~~~~~~~~~~~--~~~~~~~i~~i 178 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTP-------EGLIMFDIKESKFIDDSF--STAMHKTIAST 178 (795)
T ss_dssp CEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEET-------TEEEEEETTTTEEECSSS--CHHHHTCCEEE
T ss_pred chheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEEC-------CceEEEECCCCEEEeccC--CCCCCcceEEE
Confidence 489999999988875421111100011122223678887642 469999999988876442 11111101223
Q ss_pred EE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCc
Q 009435 141 AL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSD 218 (535)
Q Consensus 141 ~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~ 218 (535)
+. .++.|||... ...+++||+.+.++...... +......++.. .++.|+|-.- .+.
T Consensus 179 ~~d~~g~lwigt~------------~~Gl~~~~~~~~~~~~~~~~---~~~~~i~~i~~d~~g~lwigt~-------~~G 236 (795)
T 4a2l_A 179 LYRQGDQIYIGTS------------TDGLYTYSITQKTFEKVIPI---LGTKQIQAILQQSPTRIWVATE-------GAG 236 (795)
T ss_dssp EEEETTEEEEEES------------SSCEEEEETTTCCEEECC-------CCCEEEEEEEETTEEEEEEB-------SSC
T ss_pred EECCCCCEEEEEC------------CCCEEEEeCCCCeEEEecCC---CCCCeeEEEEEcCCCCEEEEEC-------CCC
Confidence 22 3678888421 13588999999888876421 11111222222 2677777421 124
Q ss_pred eEEEECCCCcEEEeecCCCCCC---CceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 219 VHILDTDTLTWKELNTSGMVLS---PRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 219 i~~yd~~t~~W~~v~~~g~~p~---~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
+++||+.+.+++........+. ...-.+++.. ++.|+| |-. +.+++||+.+..+..+..
T Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-------~Gl~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 237 LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTF-------NDLNIYHEGTDSFASYSS 299 (795)
T ss_dssp EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EES-------SCEEEEETTTTEEEEECC
T ss_pred eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeC-------ChhheEcCCCCeEEEEec
Confidence 8999999998887754211111 1122233332 456666 322 138999999999887754
No 72
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.35 E-value=2.3 Score=41.48 Aligned_cols=179 Identities=14% Similarity=0.051 Sum_probs=89.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
++.+++.|+.+ ..+.++|+.+.+-...-.. .+.. ........+++.++.|+. ...+.+||.
T Consensus 91 ~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~--~~~~-~~~~~~spdg~~l~~g~~-----------dg~v~i~~~ 151 (321)
T 3ow8_A 91 TLPIAASSSLD-----AHIRLWDLENGKQIKSIDA--GPVD-AWTLAFSPDSQYLATGTH-----------VGKVNIFGV 151 (321)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC--CTTC-CCCEEECTTSSEEEEECT-----------TSEEEEEET
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCEEEEEeC--CCcc-EEEEEECCCCCEEEEEcC-----------CCcEEEEEc
Confidence 34566677654 3688899888764332211 1111 111222234567777763 245677887
Q ss_pred CCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE-EC
Q 009435 174 ETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FG 251 (535)
Q Consensus 174 ~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~~ 251 (535)
.+..-...-.. ......+++. .++++++.|+.++ .+.+||+.+.+-...-. + .... -.+++. -+
T Consensus 152 ~~~~~~~~~~~----~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~~~-~--h~~~-v~~l~~spd 217 (321)
T 3ow8_A 152 ESGKKEYSLDT----RGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHTLE-G--HAMP-IRSLTFSPD 217 (321)
T ss_dssp TTCSEEEEEEC----SSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC-C--CSSC-CCEEEECTT
T ss_pred CCCceeEEecC----CCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEEEc-c--cCCc-eeEEEEcCC
Confidence 76543322110 1111122222 2667778887653 48899998875433211 1 1111 112222 25
Q ss_pred CEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC
Q 009435 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 252 ~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
+++++.|+.+. .|.+||+.+......-.. .........+ ..++.+++.|+.+..
T Consensus 218 ~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~--sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 218 SQLLVTASDDG------YIKIYDVQHANLAGTLSG-----HASWVLNVAF--CPDDTHFVSSSSDKS 271 (321)
T ss_dssp SCEEEEECTTS------CEEEEETTTCCEEEEECC-----CSSCEEEEEE--CTTSSEEEEEETTSC
T ss_pred CCEEEEEcCCC------eEEEEECCCcceeEEEcC-----CCCceEEEEE--CCCCCEEEEEeCCCc
Confidence 66777777542 489999987664432211 1111222223 345667777776653
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.73 Score=44.80 Aligned_cols=237 Identities=10% Similarity=0.030 Sum_probs=105.7
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++.+..++..++.|+.+ ..+.+||..+.+-...-. ....-.+++.. +++.++.++.+.......+.+|
T Consensus 79 ~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 79 SIDVDCFTKYCVTGSAD------YSIKLWDVSNGQCVATWK-----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EEEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEE-----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred EEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEee-----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 33443333355555533 468889988776544321 11111222222 4555666554422223567777
Q ss_pred ECCCCe----EEeccccC--CC--CCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCC-ccEE-Eecc
Q 009435 116 DTSSHT----WISPSVRG--EG--PEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWK-RATT 183 (535)
Q Consensus 116 d~~t~~----W~~~~~~g--~~--p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t-~~W~-~~~~ 183 (535)
|..+.. +....... .. .........+.. ++++++.|+. ...+.+||+.+ ..-. .+..
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----------DGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----------TSEEEEEETTTTTEEEEEEEC
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----------CCEEEEEECCCCcEeEEEEec
Confidence 765431 21111000 00 000002222222 3556666663 24588899887 3322 2221
Q ss_pred CCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCC
Q 009435 184 SGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 262 (535)
Q Consensus 184 ~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~ 262 (535)
. ...-.+++.. ++.+++.|+.+ ..+.+||+.+.+....-. .. ......+..-++..+++|+...
T Consensus 217 ----~-~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 217 ----H-EKSISDMQFSPDLTYFITSSRD------TNSFLVDVSTLQVLKKYE---TD-CPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp ----C-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEE---CS-SCEEEEEECSSSSEEEEEECCC
T ss_pred ----C-CCceeEEEECCCCCEEEEecCC------ceEEEEECCCCceeeeec---CC-CCceeEEecCCCceEEEeecCC
Confidence 1 1111222222 56667777644 348899998876544332 11 1111122223455666665433
Q ss_pred CCCc--------cCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 263 SQNL--------YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 263 ~~~~--------~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
.... ...+.+||..+..-...-... ........+ ..++.+++.||.+.
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~--s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-----FGPLNTVAI--SPQGTSYASGGEDG 337 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECC-----SSCEEEEEE--CTTSSEEEEEETTS
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheecc-----cCcEEEEEE--CCCCCEEEEEcCCC
Confidence 2111 125888888776533222111 111222223 34667777777654
No 74
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.31 E-value=4.3 Score=44.50 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=67.2
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCC--------CCCceEEEEECCEEEEEcCCCCCCCCCcE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPT--------PRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~--------~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~ 112 (535)
++.||+... .+.++.+|..++ .|+.-. ..+. .....+.+..+++||+... -..+
T Consensus 70 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l 133 (689)
T 1yiq_A 70 DGVMYTTGP-------FSVVYALDARDGRLIWKYDP---QSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRL 133 (689)
T ss_dssp TTEEEEECG-------GGCEEEEETTTCCEEEEECC---CCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CCEEEEEcC-------CCeEEEEECCCCceeEEEcC---CCCccccccccccCCCCccEEECCEEEEEcc------CCEE
Confidence 567888643 246999998775 688622 1110 0112234567889888652 2469
Q ss_pred EEEECCCCe--EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc--EEEec
Q 009435 113 HILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRAT 182 (535)
Q Consensus 113 ~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~--W~~~~ 182 (535)
+.+|..|.+ |+...............+.++.++.+|+-.+.. .......++.||..+.+ |+.-.
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~------~~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGA------EFGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCT------TTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCC------ccCCCCEEEEEECCCCcEEEEecc
Confidence 999998865 875431011010111223455688887743311 11134579999998765 88653
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.29 E-value=1.1 Score=49.55 Aligned_cols=226 Identities=10% Similarity=0.005 Sum_probs=109.2
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
.++++..++..++.|+.+ ..+.+||..+++....- .+ .. . .-.+++.. +++.+++|+.+ ..+.+
T Consensus 17 ~~i~~sp~~~~la~~~~~------g~v~iwd~~~~~~~~~~-~~-~~-~-~v~~~~~s~~~~~l~~~~~d-----g~i~v 81 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYS------GRVEIWNYETQVEVRSI-QV-TE-T-PVRAGKFIARKNWIIVGSDD-----FRIRV 81 (814)
T ss_dssp EEEEECSSSSEEEEEETT------SEEEEEETTTTEEEEEE-EC-CS-S-CEEEEEEEGGGTEEEEEETT-----SEEEE
T ss_pred EEEEECCCCCEEEEEeCC------CEEEEEECCCCceEEEE-ec-CC-C-cEEEEEEeCCCCEEEEEeCC-----CeEEE
Confidence 344444444456666632 46889998887655422 11 11 1 11122222 45566677653 46899
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc-cEEEeccCCCCCCCCC
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGNPPSARD 192 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~-~W~~~~~~~~~p~~r~ 192 (535)
||..+.+....-. . ....-.+++.. ++..++.|+. ...+.+||+.+. .....-.. ....
T Consensus 82 w~~~~~~~~~~~~--~--~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~vw~~~~~~~~~~~~~~----~~~~ 142 (814)
T 3mkq_A 82 FNYNTGEKVVDFE--A--HPDYIRSIAVHPTKPYVLSGSD-----------DLTVKLWNWENNWALEQTFEG----HEHF 142 (814)
T ss_dssp EETTTCCEEEEEE--C--CSSCEEEEEECSSSSEEEEEET-----------TSEEEEEEGGGTSEEEEEEEC----CSSC
T ss_pred EECCCCcEEEEEe--c--CCCCEEEEEEeCCCCEEEEEcC-----------CCEEEEEECCCCceEEEEEcC----CCCc
Confidence 9998876543221 0 11111122222 4555666662 235778888765 33222110 1111
Q ss_pred ceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE---CCEEEEEeccCCCCCcc
Q 009435 193 SHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLY 267 (535)
Q Consensus 193 ~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~---~~~iyv~GG~~~~~~~~ 267 (535)
..+++.. ++.+++.|+.++ .+.+||+.+..-..... .........+... ++.+++.|+..
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------ 207 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDD------ 207 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEEE---CCCTTCCCEEEECCSTTCCEEEEECTT------
T ss_pred EEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEEe---cCCCCCEEEEEEEECCCCCEEEEEeCC------
Confidence 2223333 456777777543 48889986544222211 1111111222222 56677777753
Q ss_pred CcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 268 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 268 ~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
..+.+||+.+..-...-... .......++ ..++.+++.|+.+.
T Consensus 208 g~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~--~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 208 LTIKIWDYQTKSCVATLEGH-----MSNVSFAVF--HPTLPIIISGSEDG 250 (814)
T ss_dssp SEEEEEETTTTEEEEEEECC-----SSCEEEEEE--CSSSSEEEEEETTS
T ss_pred CEEEEEECCCCcEEEEEcCC-----CCCEEEEEE--cCCCCEEEEEeCCC
Confidence 24899998876533322211 111222222 34555677776554
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.28 E-value=1.3 Score=45.05 Aligned_cols=182 Identities=14% Similarity=0.203 Sum_probs=95.0
Q ss_pred EEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEec
Q 009435 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISP 125 (535)
Q Consensus 46 Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 125 (535)
+++.|+.+ ..+.+||..+.+-...- ......-.++...+..++.|+.+ ..+.+||..+..-...
T Consensus 185 ~l~sg~~d------g~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~ 248 (435)
T 1p22_A 185 VIITGSSD------STVRVWDVNTGEMLNTL-----IHHCEAVLHLRFNNGMMVTCSKD-----RSIAVWDMASPTDITL 248 (435)
T ss_dssp EEEEEETT------SCEEEEESSSCCEEEEE-----CCCCSCEEEEECCTTEEEEEETT-----SCEEEEECSSSSCCEE
T ss_pred EEEEEcCC------CeEEEEECCCCcEEEEE-----cCCCCcEEEEEEcCCEEEEeeCC-----CcEEEEeCCCCCCcee
Confidence 55555543 35888898877654321 11122233444455677777654 3588888876542110
Q ss_pred cccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEE
Q 009435 126 SVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (535)
Q Consensus 126 ~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv 205 (535)
.. ..........++..++..++.|+. ...+.++|+.+.+-...-.. ......+...++.+++
T Consensus 249 ~~--~~~~~~~~v~~~~~~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~ 310 (435)
T 1p22_A 249 RR--VLVGHRAAVNVVDFDDKYIVSASG-----------DRTIKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVV 310 (435)
T ss_dssp EE--EECCCSSCEEEEEEETTEEEEEET-----------TSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEE
T ss_pred ee--EecCCCCcEEEEEeCCCEEEEEeC-----------CCeEEEEECCcCcEEEEEcC-----CCCcEEEEEeCCCEEE
Confidence 00 001111222333335566666663 24578889887653332110 1112233444666777
Q ss_pred EecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 206 IGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
.|+.++ .+.+||+.+.+-...-. .....-.++..++..++.|+.+. .|.+||+.+.
T Consensus 311 ~g~~dg------~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~sg~~dg------~i~vwd~~~~ 366 (435)
T 1p22_A 311 SGSSDN------TIRLWDIECGACLRVLE-----GHEELVRCIRFDNKRIVSGAYDG------KIKVWDLVAA 366 (435)
T ss_dssp EEETTS------CEEEEETTTCCEEEEEC-----CCSSCEEEEECCSSEEEEEETTS------CEEEEEHHHH
T ss_pred EEeCCC------eEEEEECCCCCEEEEEe-----CCcCcEEEEEecCCEEEEEeCCC------cEEEEECCCC
Confidence 777543 48899998765332211 11112233444777788887643 4888888654
No 77
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.27 E-value=1.5 Score=43.43 Aligned_cols=145 Identities=9% Similarity=0.008 Sum_probs=71.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
.+..++.|+.+ ..+.+||..+.+-...- . .....-.+++.. ++.+++.|+. ...+.+||
T Consensus 216 ~~~~~~~~~~~-----g~i~~~d~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d 275 (425)
T 1r5m_A 216 DDDKFVIPGPK-----GAIFVYQITEKTPTGKL---I-GHHGPISVLEFNDTNKLLLSASD-----------DGTLRIWH 275 (425)
T ss_dssp ETTEEEEECGG-----GCEEEEETTCSSCSEEE---C-CCSSCEEEEEEETTTTEEEEEET-----------TSCEEEEC
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCceeeee---c-cCCCceEEEEECCCCCEEEEEcC-----------CCEEEEEE
Confidence 34446666643 46899998875321111 0 011111223333 4556666663 13477888
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE-E
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-F 250 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~ 250 (535)
+.+.+....-. .......+++.. ++ +++.|+.+ ..+.+||+.+.+-...-. .... .-.++.. -
T Consensus 276 ~~~~~~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~---~~~~-~i~~~~~s~ 340 (425)
T 1r5m_A 276 GGNGNSQNCFY----GHSQSIVSASWVGDD-KVISCSMD------GSVRLWSLKQNTLLALSI---VDGV-PIFAGRISQ 340 (425)
T ss_dssp SSSBSCSEEEC----CCSSCEEEEEEETTT-EEEEEETT------SEEEEEETTTTEEEEEEE---CTTC-CEEEEEECT
T ss_pred CCCCccceEec----CCCccEEEEEECCCC-EEEEEeCC------CcEEEEECCCCcEeEecc---cCCc-cEEEEEEcC
Confidence 77654222210 011112233333 45 66676654 358899998766433322 1111 1122222 2
Q ss_pred CCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
++.+++.|+.. ..+.+||+.+..
T Consensus 341 ~~~~l~~~~~d------g~i~i~~~~~~~ 363 (425)
T 1r5m_A 341 DGQKYAVAFMD------GQVNVYDLKKLN 363 (425)
T ss_dssp TSSEEEEEETT------SCEEEEECHHHH
T ss_pred CCCEEEEEECC------CeEEEEECCCCc
Confidence 45677777643 248889887654
No 78
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.25 E-value=0.89 Score=43.83 Aligned_cols=238 Identities=11% Similarity=0.083 Sum_probs=108.1
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEEC
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~ 117 (535)
+.+..++.+++.|+.+ ..+..++........... ............-.+..++.|+.+ ..+.++|.
T Consensus 92 ~~~s~dg~~l~s~~~d------~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~~~d~ 157 (340)
T 4aow_A 92 VVISSDGQFALSGSWD------GTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRD-----KTIKLWNT 157 (340)
T ss_dssp EEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETT-----SCEEEECT
T ss_pred EEECCCCCEEEEEccc------ccceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCC-----CeEEEEEe
Confidence 3333333355556543 346777777665554321 111111111112244556666654 34666776
Q ss_pred CCCeEEeccccCCCCCCCCCeEEEEE--C--CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 118 SSHTWISPSVRGEGPEAREGHSAALV--G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~~--~--~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
....-...... ........+.. + +.+++.|+.+ ..+.++|+.+.+....-.. .. ..-
T Consensus 158 ~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~s~~~d-----------~~i~i~d~~~~~~~~~~~~---h~-~~v 218 (340)
T 4aow_A 158 LGVCKYTVQDE----SHSEWVSCVRFSPNSSNPIIVSCGWD-----------KLVKVWNLANCKLKTNHIG---HT-GYL 218 (340)
T ss_dssp TSCEEEEECSS----SCSSCEEEEEECSCSSSCEEEEEETT-----------SCEEEEETTTTEEEEEECC---CS-SCE
T ss_pred CCCceEEEEec----cccCcccceEEccCCCCcEEEEEcCC-----------CEEEEEECCCCceeeEecC---CC-CcE
Confidence 55433222211 11111122222 1 3455666631 3467888887655433210 11 111
Q ss_pred eeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEE
Q 009435 194 HTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 194 ~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
.+++. .++.+++.|+.++ .+.+||+.+.+-...-. ....-.+++...+..++.++.. ..+.+
T Consensus 219 ~~~~~s~~~~~l~s~s~Dg------~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~d------~~i~i 281 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKDG------QAMLWDLNEGKHLYTLD-----GGDIINALCFSPNRYWLCAATG------PSIKI 281 (340)
T ss_dssp EEEEECTTSSEEEEEETTC------EEEEEETTTTEEEEEEE-----CSSCEEEEEECSSSSEEEEEET------TEEEE
T ss_pred EEEEECCCCCEEEEEeCCC------eEEEEEeccCceeeeec-----CCceEEeeecCCCCceeeccCC------CEEEE
Confidence 22222 2567788887653 47888988765333221 1111223334445555666643 34888
Q ss_pred EecCCCcEEEEeeCCCCC----CCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEecc
Q 009435 273 IDVDSGLWTKVITTGEGP----SARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (535)
Q Consensus 273 yd~~~~~W~~l~~~~~~p----~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (535)
||+.+..-.......... .......+..+ ..++.+++.||.+.. --+|.+.++
T Consensus 282 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~dg~~l~sgs~Dg~----v~iW~~~tG 338 (340)
T 4aow_A 282 WDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW--SADGQTLFAGYTDNL----VRVWQVTIG 338 (340)
T ss_dssp EETTTTEEEEEECCC-------CCCCCEEEEEE--CTTSSEEEEEETTSC----EEEEEEEC-
T ss_pred EECCCCeEEEeccccceeeeccCCCCCEEEEEE--CCCCCEEEEEeCCCE----EEEEeCCCc
Confidence 998876533221111000 01111222222 346677777877653 246666554
No 79
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.23 E-value=1.9 Score=41.57 Aligned_cols=201 Identities=9% Similarity=-0.005 Sum_probs=96.8
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeE-EEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW-SQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W-~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~ 113 (535)
.+..++++.+|+.+..+ +.++++|..+.+. ......+..| .++++.. +..+| .+... .....++
T Consensus 45 ~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~-~~~~~--~~~~~i~ 111 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQSS----MADVDITPDDQFAV-TVTGL--NHPFNMQ 111 (331)
T ss_dssp EEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECSSC----CCCEEECTTSSEEE-ECCCS--SSSCEEE
T ss_pred EEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCCCC----ccceEECCCCCEEE-EecCC--CCcccEE
Confidence 33445666677766522 4799999988774 2221122212 2212222 34566 43221 1123799
Q ss_pred EEECCCCeEEeccccCCCCCCCCCeEEEEE-CC-EEEEEcCCCCCCCCCCceeeee-EEEEECCCcc-EEEeccCCCCCC
Q 009435 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYND-LYILNTETFV-WKRATTSGNPPS 189 (535)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~n~-v~~yd~~t~~-W~~~~~~~~~p~ 189 (535)
+||+.+.+....-..+. .-+.++.. ++ .+|+.+.. .+. +.+|++.... ....... ..+.
T Consensus 112 v~d~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~-----------~~~~i~~~~~~~~g~~~~~~~~-~~~~ 174 (331)
T 3u4y_A 112 SYSFLKNKFISTIPIPY-----DAVGIAISPNGNGLILIDRS-----------SANTVRRFKIDADGVLFDTGQE-FISG 174 (331)
T ss_dssp EEETTTTEEEEEEECCT-----TEEEEEECTTSSCEEEEEET-----------TTTEEEEEEECTTCCEEEEEEE-EECS
T ss_pred EEECCCCCeEEEEECCC-----CccceEECCCCCEEEEEecC-----------CCceEEEEEECCCCcEeecCCc-cccC
Confidence 99999887654322111 12344443 33 47776552 123 5555544211 1111000 0011
Q ss_pred CCCceeEEee-CC-EEEEEecCCCCCcccCceEEEECCCCcE---E-EeecCCCCCCCceeeEEEEE-CC-EEEEEeccC
Q 009435 190 ARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTW---K-ELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFT 261 (535)
Q Consensus 190 ~r~~~s~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~W---~-~v~~~g~~p~~R~~hs~v~~-~~-~iyv~GG~~ 261 (535)
......++.. ++ .+|+.+.. .+.+.+||+.+.+. . .+.. +..| ..++.. ++ .+|+....
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~------~~~v~v~d~~~~~~~~~~~~~~~-~~~~-----~~~~~spdg~~l~v~~~~- 241 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLI------GNSIGILETQNPENITLLNAVGT-NNLP-----GTIVVSRDGSTVYVLTES- 241 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETT------TTEEEEEECSSTTSCEEEEEEEC-SSCC-----CCEEECTTSSEEEEECSS-
T ss_pred CCCccceEECCCCCEEEEEeCC------CCeEEEEECCCCcccceeeeccC-CCCC-----ceEEECCCCCEEEEEEcC-
Confidence 1112233332 44 57776543 24589999987775 2 2222 1111 122222 34 46665442
Q ss_pred CCCCccCcEEEEecCCCcEEEEee
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
.+.++++|+++.+...+..
T Consensus 242 -----~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 242 -----TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp -----EEEEEEEETTTTEEEEEEE
T ss_pred -----CCEEEEEECCCCceeeecc
Confidence 2348999999988766553
No 80
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.20 E-value=3.4 Score=45.12 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=71.7
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccCCC-----CCCCCCeEEEEECCEEEEEcCCCCCCCCCC
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEG-----PEAREGHSAALVGKRLFIFGGCGKSSNTND 161 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~-----p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~ 161 (535)
+-++.+++||+... ...++.+|..|.+ |+........ .......+.++.+++||+...
T Consensus 61 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 125 (668)
T 1kv9_A 61 TPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------- 125 (668)
T ss_dssp CCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---------
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---------
Confidence 34567999999864 2469999988764 8753211000 000112234567888888643
Q ss_pred ceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEee
Q 009435 162 EVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (535)
Q Consensus 162 ~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~ 233 (535)
...++.+|..+. .|+.-... .........+.++.++.+|+-.+.. .......++.||.++.+ |+.-.
T Consensus 126 ---dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 ---DGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGA-EYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp ---TSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCC-CcCCCCEEEEEECCCCcEEEEecc
Confidence 246899998876 48875421 1111112223445688887643321 11134569999998765 88643
No 81
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.20 E-value=4.6 Score=44.13 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCC--------CCCceEEEEECCEEEEEcCCCCCCCCCcE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPT--------PRDSHSCTTVGENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~--------~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~ 112 (535)
++.||+... ...++.+|..++ .|+.-. ..+. .....+.+..+++||+... -..+
T Consensus 66 ~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l 129 (668)
T 1kv9_A 66 DGVIYTSMS-------WSRVIAVDAASGKELWRYDP---EVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRL 129 (668)
T ss_dssp TTEEEEEEG-------GGEEEEEETTTCCEEEEECC---CCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEE
T ss_pred CCEEEEECC-------CCeEEEEECCCChhceEECC---CCCccccccccccCCccceEEECCEEEEEcC------CCEE
Confidence 557888643 246999998765 688622 1110 0112334557888887642 2479
Q ss_pred EEEECCCCe--EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEec
Q 009435 113 HILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRAT 182 (535)
Q Consensus 113 ~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~ 182 (535)
+.+|..|.+ |+..... .........+.++.++.+|+-.+.. .......++.||..+. .|+.-.
T Consensus 130 ~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~------~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGA------EYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCT------TTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCC------CcCCCCEEEEEECCCCcEEEEecc
Confidence 999998865 8753311 1111112223455688887743311 1113467999999876 487653
No 82
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.15 E-value=2.6 Score=45.55 Aligned_cols=121 Identities=9% Similarity=0.090 Sum_probs=65.0
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEc-CCC--eEEEeeccCC--CCCC---CCceEEEE--ECCE----EEEEcCCCCCCC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDT-VNQ--TWSQPVIKGS--PPTP---RDSHSCTT--VGEN----LYVFGGTDGMNP 108 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~-~t~--~W~~l~~~g~--~P~~---R~~hs~~~--~~~~----Iyv~GG~~~~~~ 108 (535)
++.||+.+.. .+.++++|. .+. .|+.-..... .+.. ....+.+. .+++ ||+...
T Consensus 62 ~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------ 129 (599)
T 1w6s_A 62 DGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------ 129 (599)
T ss_dssp TTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------
T ss_pred CCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------
Confidence 5678887552 246999998 665 6887321100 0001 11223344 5676 887642
Q ss_pred CCcEEEEECCCCe--EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEec
Q 009435 109 LRDLHILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRAT 182 (535)
Q Consensus 109 ~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~ 182 (535)
-..++.+|..|.+ |+..... .........+-++.++.+|+-.+.. +......++.||..+. .|+.-.
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~v~~g~V~vg~~g~------e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSD-IKVGSTLTIAPYVVKDKVIIGSSGA------ELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEECCBCG------GGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEEEeecCCC-CCccceeecCCEEECCEEEEEeccc------ccCCCCeEEEEECCCCcEEEEEcC
Confidence 2479999998865 8753210 0000011223345688877643311 1112457899999876 487654
No 83
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.15 E-value=1 Score=47.96 Aligned_cols=255 Identities=15% Similarity=0.111 Sum_probs=119.8
Q ss_pred cceEEEEcCCCEEEEECCcCCCCCCcceEEEEEc--CCCeEEEeeccCCCCCCCCceEEEEE-----CC-EEEEEcCCCC
Q 009435 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDT--VNQTWSQPVIKGSPPTPRDSHSCTTV-----GE-NLYVFGGTDG 105 (535)
Q Consensus 34 gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~--~t~~W~~l~~~g~~P~~R~~hs~~~~-----~~-~Iyv~GG~~~ 105 (535)
-|..+..++++++|+.+. + +.+.+||+ .+.+-.. .++....-..++.- ++ .+|+..-.
T Consensus 181 ~~~v~~spdg~~l~v~~~-d------~~V~v~D~~~~t~~~~~-----~i~~g~~p~~va~sp~~~~dg~~l~v~~~~-- 246 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR-D------ARIDMIDLWAKEPTKVA-----EIKIGIEARSVESSKFKGYEDRYTIAGAYW-- 246 (543)
T ss_dssp EEEEEECTTSCEEEEEET-T------SEEEEEETTSSSCEEEE-----EEECCSEEEEEEECCSTTCTTTEEEEEEEE--
T ss_pred cceEEECCCCCEEEEECC-C------CeEEEEECcCCCCcEEE-----EEecCCCcceEEeCCCcCCCCCEEEEEEcc--
Confidence 355556667777777653 1 56899999 6655332 11122222333332 34 45554321
Q ss_pred CCCCCcEEEEECCCCeEEe-ccccCC-------CCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc
Q 009435 106 MNPLRDLHILDTSSHTWIS-PSVRGE-------GPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (535)
Q Consensus 106 ~~~~~~~~~yd~~t~~W~~-~~~~g~-------~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~ 176 (535)
-+.+.++|..+.+-.+ ++..+. .+.+|........ ++.+|+-... .+.++++|..+.
T Consensus 247 ---~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----------~g~i~vvd~~~~ 312 (543)
T 1nir_A 247 ---PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------TGKVLLVNYKDI 312 (543)
T ss_dssp ---SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------TTEEEEEECTTS
T ss_pred ---CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----------CCeEEEEEecCC
Confidence 2468888988765432 221110 1222322222222 3445554331 356788887654
Q ss_pred cEEEeccCCCCCCCCCceeEEee-CCE-EEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCE
Q 009435 177 VWKRATTSGNPPSARDSHTCSSW-KNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN 253 (535)
Q Consensus 177 ~W~~~~~~~~~p~~r~~~s~~~~-~~~-lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~ 253 (535)
+-..+... +..+.-+..+.. +++ +|+.+. ..+.+.++|+++++-...-..+..|.+-.+...+.- ++.
T Consensus 313 ~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~------~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~ 383 (543)
T 1nir_A 313 DNLTVTSI---GAAPFLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP 383 (543)
T ss_dssp SSCEEEEE---ECCSSCCCEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEE
T ss_pred CcceeEEe---ccCcCccCceECCCCCEEEEEec------CCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCcc
Confidence 31111110 112222333332 444 555432 234688899999876554443444444333333222 367
Q ss_pred EEEEeccCCCCCccCcEEEEecCCC-----cEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEE
Q 009435 254 LFVFGGFTDSQNLYDDLYMIDVDSG-----LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYL 328 (535)
Q Consensus 254 iyv~GG~~~~~~~~~dv~~yd~~~~-----~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l 328 (535)
+|+.+...+ +.|-++|..+. .|+.+.............. ....+..||+-.-.+.....-+.+..+
T Consensus 384 ~~~s~~~~d-----~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~----~~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 384 VWSTSHLGD-----GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK----THPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp EEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE----CCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred EEEeccCCC-----ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE----cCCCCCcEEEecCCCCCcccCceEEEE
Confidence 777765432 34888888762 3776665421111111111 113455566532112111123457777
Q ss_pred eccccc
Q 009435 329 YTGLVN 334 (535)
Q Consensus 329 ~~~~~~ 334 (535)
++...+
T Consensus 455 d~~~~~ 460 (543)
T 1nir_A 455 DLKNLD 460 (543)
T ss_dssp ETTCTT
T ss_pred ECCCCC
Confidence 766544
No 84
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.14 E-value=1.7 Score=41.58 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=61.4
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEE-eeccCCCCC--CCCceEEEEE--CCEEEEEcCC---CCC
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPT--PRDSHSCTTV--GENLYVFGGT---DGM 106 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~--~R~~hs~~~~--~~~Iyv~GG~---~~~ 106 (535)
+..+..++++.+|+.+.. ...++++|+.+.+-.. +.. +. +. ...-+.++.. ++.+|+.... ...
T Consensus 37 ~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDL-ST-PEERVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp CCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEEC-CB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred cceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEc-CC-cccccccccceEECCCCCEEEEEecccccccc
Confidence 334445566678887652 2469999998876543 221 11 00 0011223332 3467776411 001
Q ss_pred C---CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE
Q 009435 107 N---PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (535)
Q Consensus 107 ~---~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~ 180 (535)
. .-..+++||+.+.+....-..+. .-+.++.. ++ .||+.+ +.++++|+.+.+-..
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~--------------~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGLG--------------RDLHVMDPEAGTLVE 168 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEES--------------SSEEEEETTTTEEEE
T ss_pred cccccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEeC--------------CeEEEEECCCCcEee
Confidence 1 23689999999887643321111 11223332 33 466652 348899998876543
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.08 E-value=1.8 Score=43.80 Aligned_cols=84 Identities=17% Similarity=0.093 Sum_probs=42.9
Q ss_pred ceEEEECCCCcEEEeecCCCCCCCceeeEEEE--ECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCcee
Q 009435 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS 295 (535)
Q Consensus 218 ~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~--~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~ 295 (535)
.|.+||+.+.+-..... .... ..+++. .++.+++..|..+ +.|.+||..+.+ .+.... .. ...
T Consensus 302 ~I~iwd~~t~~~~~~~~---~~~~--v~~~~~~~~~~~lv~~sg~~d-----~~I~iwd~~~~~--~v~~l~-gH--~~~ 366 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVD---AHSQ--VCSILWSPHYKELISGHGFAQ-----NQLVIWKYPTMA--KVAELK-GH--TSR 366 (420)
T ss_dssp EEEEEETTTTEEEEEEE---CSSC--EEEEEEETTTTEEEEEECTTT-----CCEEEEETTTCC--EEEEEC-CC--SSC
T ss_pred EEEEEeCCccccceeec---cccc--eeeeeecCCCCeEEEEEecCC-----CEEEEEECCCCc--EEEEEc-CC--CCC
Confidence 48889998876544332 1111 112222 2455666656543 348999987754 333221 01 111
Q ss_pred eeeeeecccCCCEEEEEcccCCC
Q 009435 296 VAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 296 ~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
...+++ ..++.+++.||.+..
T Consensus 367 V~~l~~--spdg~~l~S~s~D~t 387 (420)
T 4gga_A 367 VLSLTM--SPDGATVASAAADET 387 (420)
T ss_dssp EEEEEE--CTTSSCEEEEETTTE
T ss_pred EEEEEE--cCCCCEEEEEecCCe
Confidence 222223 356777788876653
No 86
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.99 E-value=2.8 Score=44.95 Aligned_cols=126 Identities=12% Similarity=0.127 Sum_probs=71.3
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEEC-CCCe--EEeccccCC--CCCC---CCCeEEEEECCEEEEEcCCCCCCCCC
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDT-SSHT--WISPSVRGE--GPEA---REGHSAALVGKRLFIFGGCGKSSNTN 160 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~-~t~~--W~~~~~~g~--~p~~---r~~hs~~~~~~~lyv~GG~~~~~~~~ 160 (535)
+-++.++.||+.... ...++++|. .+.+ |+....... .+.+ ....+.++.+++||+...
T Consensus 57 ~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------- 123 (571)
T 2ad6_A 57 APLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------- 123 (571)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--------
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC--------
Confidence 345679999998752 246999999 7754 875321100 0001 112345667888988754
Q ss_pred CceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEee
Q 009435 161 DEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 233 (535)
Q Consensus 161 ~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~ 233 (535)
...++++|..+. .|+.-... .........+.++.++.+|+-.+... ...-..++.||.++.+ |+.-.
T Consensus 124 ----dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ----NGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred ----CCEEEEEECCCCCEEEEecCCC-CCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEcc
Confidence 246899999876 58764311 00000112233456888877543211 1123469999998764 87643
No 87
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.96 E-value=1.7 Score=41.75 Aligned_cols=239 Identities=10% Similarity=-0.011 Sum_probs=113.3
Q ss_pred ccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCc
Q 009435 33 WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRD 111 (535)
Q Consensus 33 ~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~ 111 (535)
.+-..+...+++.||+..-. ...+++||+.+.+...... + .+. .+.+.. ++++|+.. .+.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~-~~~-~~i~~~~dG~l~v~~-------~~~ 74 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIP------AKKVCRWDSFTKQVQRVTM----D-APV-SSVALRQSGGYVATI-------GTK 74 (297)
T ss_dssp BEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEC----S-SCE-EEEEEBTTSSEEEEE-------TTE
T ss_pred cccCCeEECCCCEEEEEECC------CCEEEEEECCCCcEEEEeC----C-Cce-EEEEECCCCCEEEEE-------CCe
Confidence 44444445556678887542 2579999999876655431 1 111 222222 56666653 247
Q ss_pred EEEEECCCCeEEeccccCC-CCCCCCCeEEEEECCEEEEEcCCCCCCC-CCCceeeeeEEEEECCCccEEEeccCCCCCC
Q 009435 112 LHILDTSSHTWISPSVRGE-GPEAREGHSAALVGKRLFIFGGCGKSSN-TNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (535)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~-~p~~r~~hs~~~~~~~lyv~GG~~~~~~-~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~ 189 (535)
+++||+.+.+++.+..... .+..+....++.-++++|+-. ...... .........++++|+.. +...+.....
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~--- 149 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD--- 149 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES---
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEEEEeeccc---
Confidence 9999999998876543211 111111222222246777632 110000 00011235788998763 3333321101
Q ss_pred CCCceeEEee--CCEEEEEecCCCCCcccCceEEEEC--CCCcEEEeecCCCCCC-CceeeEEEE-ECCEEEEEeccCCC
Q 009435 190 ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDT--DTLTWKELNTSGMVLS-PRAGHSTVA-FGKNLFVFGGFTDS 263 (535)
Q Consensus 190 ~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~--~t~~W~~v~~~g~~p~-~R~~hs~v~-~~~~iyv~GG~~~~ 263 (535)
....++.. ++.||+.... .+.|++||. ++............+. ...-..++. -+++|||.....
T Consensus 150 --~pngi~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-- 219 (297)
T 3g4e_A 150 --ISNGLDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-- 219 (297)
T ss_dssp --BEEEEEECTTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT--
T ss_pred --cccceEEcCCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC--
Confidence 11233332 3467777542 345888875 5555432111000111 111112332 356788764321
Q ss_pred CCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcc
Q 009435 264 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (535)
Q Consensus 264 ~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (535)
..|++||+++++....-.. |..+ ..++++.....+.|||.-.
T Consensus 220 ----~~v~~~d~~tG~~~~~i~~---p~~~--~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 ----GRVIRLDPVTGKRLQTVKL---PVDK--TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ----TEEEEECTTTCCEEEEEEC---SSSB--EEEEEEESGGGCEEEEEEB
T ss_pred ----CEEEEEcCCCceEEEEEEC---CCCC--ceEEEEeCCCCCEEEEEcC
Confidence 2499999987765443333 2212 2223332233456777543
No 88
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.95 E-value=2.8 Score=40.30 Aligned_cols=193 Identities=9% Similarity=-0.009 Sum_probs=95.4
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CC-EEEEEcCCCCCCCCCcEEEEECC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
.+.+.+|+....+ +.+.+||+.+++.......+ .....++.- ++ .+|+.+..+ ..++++|+.
T Consensus 7 ~~~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~ 70 (331)
T 3u4y_A 7 TTSNFGIVVEQHL------RRISFFSTDTLEILNQITLG-----YDFVDTAITSDCSNVVVTSDFC-----QTLVQIETQ 70 (331)
T ss_dssp CCCCEEEEEEGGG------TEEEEEETTTCCEEEEEECC-----CCEEEEEECSSSCEEEEEESTT-----CEEEEEECS
T ss_pred CCCCEEEEEecCC------CeEEEEeCcccceeeeEEcc-----CCcceEEEcCCCCEEEEEeCCC-----CeEEEEECC
Confidence 3456778876532 57999999998876543211 122222222 34 577776532 379999998
Q ss_pred CCeE-EeccccCCCCCCCCCeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCcee
Q 009435 119 SHTW-ISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (535)
Q Consensus 119 t~~W-~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s 195 (535)
+.+. ...... ...++ ++++.. + ..+| .+... . -...++++|+.+.+.......+. ..+.
T Consensus 71 ~~~~~~~~~~~--~~~~~--~~~~~s~dg~~l~-~~~~~------~--~~~~i~v~d~~~~~~~~~~~~~~-----~~~~ 132 (331)
T 3u4y_A 71 LEPPKVVAIQE--GQSSM--ADVDITPDDQFAV-TVTGL------N--HPFNMQSYSFLKNKFISTIPIPY-----DAVG 132 (331)
T ss_dssp SSSCEEEEEEE--CSSCC--CCEEECTTSSEEE-ECCCS------S--SSCEEEEEETTTTEEEEEEECCT-----TEEE
T ss_pred CCceeEEeccc--CCCCc--cceEECCCCCEEE-EecCC------C--CcccEEEEECCCCCeEEEEECCC-----Cccc
Confidence 8764 222211 12222 212222 3 3566 33310 0 01278999998877654432211 1234
Q ss_pred EEee-CC-EEEEEecCCCCCcccCc-eEEEECCCCc-EEEeecCCCCCCCceeeEEEEE-CC-EEEEEeccCCCCCccCc
Q 009435 196 CSSW-KN-KIIVIGGEDGHDYYLSD-VHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 196 ~~~~-~~-~lyv~GG~~~~~~~~~~-i~~yd~~t~~-W~~v~~~g~~p~~R~~hs~v~~-~~-~iyv~GG~~~~~~~~~d 269 (535)
++.. ++ .+|+.+..+ +. +.+|++.... ...... ...+....-..++.. ++ .+|+.+.. .+.
T Consensus 133 ~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~------~~~ 199 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQ-EFISGGTRPFNITFTPDGNFAFVANLI------GNS 199 (331)
T ss_dssp EEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEE-EEECSSSSEEEEEECTTSSEEEEEETT------TTE
T ss_pred eEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCC-ccccCCCCccceEECCCCCEEEEEeCC------CCe
Confidence 4433 33 577765532 23 6666654321 111100 001111112233332 34 47666543 245
Q ss_pred EEEEecCCCcE
Q 009435 270 LYMIDVDSGLW 280 (535)
Q Consensus 270 v~~yd~~~~~W 280 (535)
+.+||+.+.+.
T Consensus 200 v~v~d~~~~~~ 210 (331)
T 3u4y_A 200 IGILETQNPEN 210 (331)
T ss_dssp EEEEECSSTTS
T ss_pred EEEEECCCCcc
Confidence 99999988775
No 89
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.88 Score=44.48 Aligned_cols=199 Identities=15% Similarity=0.174 Sum_probs=98.1
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--C--CEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--G--ENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
.+++.|+.+ ..+.+||..+++|..+..... ......++.+ + +.+++.|+.+ ..+.+||+.+.
T Consensus 70 ~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~ 135 (379)
T 3jrp_A 70 TILASCSYD------GKVLIWKEENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKEN 135 (379)
T ss_dssp SEEEEEETT------SCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTT
T ss_pred CEEEEeccC------CEEEEEEcCCCceeEeeeecC---CCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCC
Confidence 355666643 358889999998876542211 1222233333 2 5577777654 36888888765
Q ss_pred eEEe-ccccCCCCCCCCCeEEEEE--------------CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEecc
Q 009435 121 TWIS-PSVRGEGPEAREGHSAALV--------------GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATT 183 (535)
Q Consensus 121 ~W~~-~~~~g~~p~~r~~hs~~~~--------------~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~ 183 (535)
.-.. .... . ....-.+++.. ++.+++.|+.+ ..+.+||+.+. .|..+..
T Consensus 136 ~~~~~~~~~-~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 136 GTTSPIIID-A--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-----------NLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp SCCCEEEEE-C--CTTCEEEEEECCCC----------CTTCEEEEEETT-----------SCEEEEEEETTTTEEEEEEE
T ss_pred CceeeEEec-C--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC-----------CeEEEEEecCCCcceeeEEE
Confidence 3211 1100 0 01111122222 35677777732 24667776543 3444432
Q ss_pred CCCCCCCCCceeEEee-C---CEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCCceeeEEEE-ECCEEEE
Q 009435 184 SGNPPSARDSHTCSSW-K---NKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVA-FGKNLFV 256 (535)
Q Consensus 184 ~~~~p~~r~~~s~~~~-~---~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~R~~hs~v~-~~~~iyv 256 (535)
.... ...-.+++.. + +.+++.|+.++ .+.+||+.+.. +....... ......-.++.. -++.+++
T Consensus 202 ~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 202 LEGH--SDWVRDVAWSPTVLLRSYLASVSQDR------TCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp ECCC--SSCEEEEEECCCCSSSEEEEEEETTS------CEEEEEESSTTSCCEEEESSS-SCCSSCEEEEEECSSSCCEE
T ss_pred Eecc--cCcEeEEEECCCCCCCCeEEEEeCCC------EEEEEeCCCCCccceeeeecc-ccCCCcEEEEEEcCCCCEEE
Confidence 1110 1111222222 4 68888888654 37788877653 22211100 111111222222 3566777
Q ss_pred EeccCCCCCccCcEEEEecC-CCcEEEEeeC
Q 009435 257 FGGFTDSQNLYDDLYMIDVD-SGLWTKVITT 286 (535)
Q Consensus 257 ~GG~~~~~~~~~dv~~yd~~-~~~W~~l~~~ 286 (535)
.|+.. ..+.+||+. ...|..+...
T Consensus 273 ~~~~d------g~i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 273 LSGGD------NKVTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp EEESS------SSEEEEEEEETTEEEEEEEE
T ss_pred EecCC------CcEEEEeCCCCCccccccce
Confidence 77653 238888887 5678877654
No 90
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.89 E-value=1.8 Score=42.58 Aligned_cols=194 Identities=9% Similarity=0.051 Sum_probs=93.8
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++...++.+++.||.+ ..+.+||..++.|........ .-...-.++.+ +++.++.|+.++ .+.++
T Consensus 22 l~~sp~g~~las~~~D------~~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw 88 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGD------RRIRIWGTEGDSWICKSVLSE--GHQRTVRKVAWSPCGNYLASASFDA-----TTCIW 88 (345)
T ss_dssp EEECTTSSCEEEEETT------SCEEEEEEETTEEEEEEEECS--SCSSCEEEEEECTTSSEEEEEETTS-----CEEEE
T ss_pred EEECCCCCEEEEEcCC------CeEEEEEcCCCcceeeeeecc--ccCCcEEEEEECCCCCEEEEEECCC-----cEEEE
Confidence 3343334466777754 357788888888764321100 01111222233 566777777653 46777
Q ss_pred ECCCCeEEeccccCCCCCCCCCe-EEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc-cEEEeccCCCCCCCCC
Q 009435 116 DTSSHTWISPSVRGEGPEAREGH-SAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGNPPSARD 192 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~h-s~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~-~W~~~~~~~~~p~~r~ 192 (535)
|..+..+..+... ....... +++.. ++++++.|+.+ ..+.++|+.+. .+..+..... ... .
T Consensus 89 ~~~~~~~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~~-h~~-~ 152 (345)
T 3fm0_A 89 KKNQDDFECVTTL---EGHENEVKSVAWAPSGNLLATCSRD-----------KSVWVWEVDEEDEYECVSVLNS-HTQ-D 152 (345)
T ss_dssp EECCC-EEEEEEE---CCCSSCEEEEEECTTSSEEEEEETT-----------SCEEEEEECTTSCEEEEEEECC-CCS-C
T ss_pred EccCCCeEEEEEc---cCCCCCceEEEEeCCCCEEEEEECC-----------CeEEEEECCCCCCeEEEEEecC-cCC-C
Confidence 7777766443321 1111111 22222 46677777742 34667777553 2332221101 011 1
Q ss_pred ceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCc-eeeEEEE-ECCEEEEEeccCCCCCccCc
Q 009435 193 SHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AGHSTVA-FGKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 193 ~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R-~~hs~v~-~~~~iyv~GG~~~~~~~~~d 269 (535)
..+++. -++.+++.|+.++ .+.+||..+..|..+.. ..... .-.++.. -++++++.|+.+. .
T Consensus 153 v~~~~~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~---~~~h~~~v~~l~~sp~g~~l~s~s~D~------~ 217 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDD------TVKLYREEEDDWVCCAT---LEGHESTVWSLAFDPSGQRLASCSDDR------T 217 (345)
T ss_dssp EEEEEECSSSSCEEEEETTS------CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTS------C
T ss_pred eEEEEECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEE---ecCCCCceEEEEECCCCCEEEEEeCCC------e
Confidence 111222 2566777777654 37888888888875543 11111 1112222 2456777777543 2
Q ss_pred EEEEec
Q 009435 270 LYMIDV 275 (535)
Q Consensus 270 v~~yd~ 275 (535)
|.+||.
T Consensus 218 v~iW~~ 223 (345)
T 3fm0_A 218 VRIWRQ 223 (345)
T ss_dssp EEEEEE
T ss_pred EEEecc
Confidence 556654
No 91
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.80 E-value=1.4 Score=42.33 Aligned_cols=210 Identities=10% Similarity=0.016 Sum_probs=93.1
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCe-EEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT-WSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~-W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
+..++++.||+.+.. .+.+.+||..... ...+... +....-+.++.. +..||+.+..+ ..+.+
T Consensus 90 ~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~ 155 (343)
T 1ri6_A 90 STDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVV---EGLDGCHSANISPDNRTLWVPALKQ-----DRICL 155 (343)
T ss_dssp EECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEE---CCCTTBCCCEECTTSSEEEEEEGGG-----TEEEE
T ss_pred EEcCCCCEEEEEecC------CCeEEEEECCCCccccccccc---cCCCCceEEEECCCCCEEEEecCCC-----CEEEE
Confidence 334556656665432 1357777774222 2222211 111112222222 34577765222 46899
Q ss_pred EECCC-CeEEecc--ccCCCCCCCCCeEEEEE-CC-EEEEEcCCCCCCCCCCceeeeeEEEEECC--CccEEEeccCCCC
Q 009435 115 LDTSS-HTWISPS--VRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTE--TFVWKRATTSGNP 187 (535)
Q Consensus 115 yd~~t-~~W~~~~--~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~--t~~W~~~~~~~~~ 187 (535)
||+.+ .+..... .. ..+....-..++.. ++ .+|+.+.. .+.+.+||+. +..+.........
T Consensus 156 ~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~-----------~~~i~~~~~~~~~g~~~~~~~~~~~ 223 (343)
T 1ri6_A 156 FTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNEL-----------NSSVDVWELKDPHGNIECVQTLDMM 223 (343)
T ss_dssp EEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETT-----------TTEEEEEESSCTTSCCEEEEEEECS
T ss_pred EEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCC-----------CCEEEEEEecCCCCcEEEEeecccc
Confidence 99887 6554321 10 11111111122222 33 47776542 2457778874 4444332211112
Q ss_pred CCC----CCceeEEee--CCEEEEEecCCCCCcccCceEEEECC--CCcEEEeecCCCCCCCceeeEEEEE-CC-EEEEE
Q 009435 188 PSA----RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVLSPRAGHSTVAF-GK-NLFVF 257 (535)
Q Consensus 188 p~~----r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~--t~~W~~v~~~g~~p~~R~~hs~v~~-~~-~iyv~ 257 (535)
+.. .....++.. +..||+.+..+ +.+.+||+. +.+++.+.. .+....-..++.. ++ .+|+.
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~------~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRTA------SLITVFSVSEDGSVLSKEGF---QPTETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTT------TEEEEEEECTTSCCEEEEEE---EECSSSCCCEEECTTSSEEEEE
T ss_pred CccccccCCccceEECCCCCEEEEEecCC------CEEEEEEEcCCCCceEEeee---ecCCCccceEEECCCCCEEEEe
Confidence 211 111123332 34666655322 357888877 556666543 1111111122222 34 45554
Q ss_pred eccCCCCCccCcEEEEecCCCcEEEEeeC
Q 009435 258 GGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
++... .-.+|.+|+.+++++.+...
T Consensus 295 ~~~~~----~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 295 GQKSH----HISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp CTTTC----EEEEEEEETTTTEEEEEEEE
T ss_pred cCCCC----eEEEEEEcCCCceeeEcccc
Confidence 43221 11245557778888877654
No 92
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.72 E-value=1.8 Score=42.18 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=96.8
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECC-EEEEEcCCCCCCCCCcEEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~Iyv~GG~~~~~~~~~~~~yd 116 (535)
+++..+++||+.+..+ ....+++||..+.+++.+..... ......+.+..-++ .||+.+.. -..+.+||
T Consensus 45 ~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~-----~~~v~v~~ 114 (347)
T 3hfq_A 45 LALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYH-----KGTAEVMK 114 (347)
T ss_dssp EEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETT-----TTEEEEEE
T ss_pred EEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCC-----CCEEEEEE
Confidence 3443344477765422 12578999998888776542000 11111222222234 56666532 24577888
Q ss_pred CC-CCeEEec---cccCCCCCCCC----CeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECC-CccEEEeccCCC
Q 009435 117 TS-SHTWISP---SVRGEGPEARE----GHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGN 186 (535)
Q Consensus 117 ~~-t~~W~~~---~~~g~~p~~r~----~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~-t~~W~~~~~~~~ 186 (535)
+. +.+...+ ...+..|.+|. -+.++.. ++++|+.+.. .+.+++||+. +.+...+.....
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------~~~v~~~~~~~~g~~~~~~~~~~ 183 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------SDKVYVYNVSDAGQLSEQSVLTM 183 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------TTEEEEEEECTTSCEEEEEEEEC
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------CCEEEEEEECCCCcEEEeeeEEc
Confidence 74 3333322 22222222222 2223332 4567776541 2467888887 555554331101
Q ss_pred CCCCCCceeEEeeCC-EEEEEecCCCCCcccCceEEEE--CCCCcEEEeecCCCCCCC----ceeeEEEEE-CC-EEEEE
Q 009435 187 PPSARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILD--TDTLTWKELNTSGMVLSP----RAGHSTVAF-GK-NLFVF 257 (535)
Q Consensus 187 ~p~~r~~~s~~~~~~-~lyv~GG~~~~~~~~~~i~~yd--~~t~~W~~v~~~g~~p~~----R~~hs~v~~-~~-~iyv~ 257 (535)
.+...-.+.+..-++ .+|+.+..+ +.+.+|+ ..+.+++.+......+.. ..-..++.. ++ .||+.
T Consensus 184 ~~g~~p~~~~~spdg~~l~v~~~~~------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 184 EAGFGPRHLVFSPDGQYAFLAGELS------SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTT------TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCCceEEECCCCCEEEEEeCCC------CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence 111111122222244 477765432 2344554 446776654432112221 112222222 34 46666
Q ss_pred eccCCCCCccCcEEEEecC-CCcEEEEee
Q 009435 258 GGFTDSQNLYDDLYMIDVD-SGLWTKVIT 285 (535)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~-~~~W~~l~~ 285 (535)
+.. .+.+.+||+. ++.+..+..
T Consensus 258 ~~~------~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 258 NRG------YNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp EET------TTEEEEEEECGGGCEEEEEE
T ss_pred eCC------CCEEEEEEECCCCcEEEeEE
Confidence 543 2458888886 335555543
No 93
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.70 E-value=0.43 Score=47.59 Aligned_cols=207 Identities=9% Similarity=0.087 Sum_probs=85.8
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCc-eEEEEE-CCEEEEEcCCCCCCCCCcEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDS-HSCTTV-GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~-hs~~~~-~~~Iyv~GG~~~~~~~~~~~ 113 (535)
.++....++.+++.|+.+........++.|+..+..-.... .......... .+++.. +++++ .++.+ ..+.
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~s~d~~~l-~~s~d-----g~v~ 118 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-CTAGVQTEAGVTDVAWVSEKGIL-VASDS-----GAVE 118 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-CSEEEECSSCEEEEEEETTTEEE-EEETT-----SCEE
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-ecccCCCCCCEEEEEEcCCCCEE-EEECC-----CEEE
Confidence 34444444456666664432111245777776543211100 0000000111 122233 45554 45543 3577
Q ss_pred EEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCC
Q 009435 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (535)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~ 192 (535)
+||+.+.+-..............-.+++.. ++++++.|+.+ ..+.++|+.+.+-...-. .... .
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----------g~v~iwd~~~~~~~~~~~---~h~~-~ 183 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----------FSVKVWDLSQKAVLKSYN---AHSS-E 183 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----------SCEEEEETTTTEEEEEEC---CCSS-C
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc---CCCC-C
Confidence 888776543221100000001111122222 45677777732 347788888765433321 0111 1
Q ss_pred ceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE---CCEEEEEeccCCCCCcc
Q 009435 193 SHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLY 267 (535)
Q Consensus 193 ~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~---~~~iyv~GG~~~~~~~~ 267 (535)
..+++.. ++.+++.||.++ .+.+||+.+.+-..... .........++.. ++.+++.|+..
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d------ 248 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDG------RILLWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFACGDET------ 248 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTS------CEEECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESS------
T ss_pred EEEEEEccCCCceeeeeccCC------ceEEEECCCCceeeeee---eccccccccchhhhhcccceEEEeecc------
Confidence 1122222 335777777653 37788887654322211 1111111222322 35677777753
Q ss_pred CcEEEEecCCCc
Q 009435 268 DDLYMIDVDSGL 279 (535)
Q Consensus 268 ~dv~~yd~~~~~ 279 (535)
..|.+||+.+..
T Consensus 249 ~~i~~wd~~~~~ 260 (357)
T 4g56_B 249 GNVSLVNIKNPD 260 (357)
T ss_dssp SCEEEEESSCGG
T ss_pred cceeEEECCCCc
Confidence 248899987754
No 94
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=94.64 E-value=6.3 Score=43.00 Aligned_cols=198 Identities=10% Similarity=-0.026 Sum_probs=102.7
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCC-----------CCCCcEEEEECCCCeEEeccc
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGM-----------NPLRDLHILDTSSHTWISPSV 127 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~-----------~~~~~~~~yd~~t~~W~~~~~ 127 (535)
..++++|..+++........ ... .+.+.. +++.++++..+.. .....++++++.+.+.....+
T Consensus 151 ~~i~v~d~~tg~~~~~~~~~----~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v 225 (710)
T 2xdw_A 151 VTIKFMKVDGAKELPDVLER----VKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC 225 (710)
T ss_dssp EEEEEEETTTTEEEEEEEEE----ECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE
T ss_pred EEEEEEECCCCCCCcccccC----ccc-ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE
Confidence 47999999999887643211 111 122222 4544444433322 234569999998765321111
Q ss_pred cCCCCCCCCCeEEEE-ECCE-EEEEcCCCCCCCCCCceeeeeEEEEECCC------c--cEEEeccCCCCCCCCCceeEE
Q 009435 128 RGEGPEAREGHSAAL-VGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTET------F--VWKRATTSGNPPSARDSHTCS 197 (535)
Q Consensus 128 ~g~~p~~r~~hs~~~-~~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t------~--~W~~~~~~~~~p~~r~~~s~~ 197 (535)
......+........ -+++ |++..... ....++++++|+.+ . .+..+... .........
T Consensus 226 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s 294 (710)
T 2xdw_A 226 AEFPDEPKWMGGAELSDDGRYVLLSIREG-------CDPVNRLWYCDLQQESNGITGILKWVKLIDN----FEGEYDYVT 294 (710)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECS-------SSSCCEEEEEEGGGSSSSSCSSCCCEEEECS----SSSCEEEEE
T ss_pred eccCCCCeEEEEEEEcCCCCEEEEEEEcc-------CCCccEEEEEECcccccccCCccceEEeeCC----CCcEEEEEe
Confidence 001112222223322 2344 44433211 11146899999876 4 57777532 111112233
Q ss_pred eeCCEEEEEecCCCCCcccCceEEEECCCC---cEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEE
Q 009435 198 SWKNKIIVIGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 198 ~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~---~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
..++.||+.+..+. ....|+.+|+.+. .|+.+.... ....-..+... ++.+++...... ...|+++
T Consensus 295 ~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~ 364 (710)
T 2xdw_A 295 NEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSNFLVLCYLHDV----KNTLQLH 364 (710)
T ss_dssp EETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTTEEEEEEEETT----EEEEEEE
T ss_pred ccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCCEEEEEEEECC----EEEEEEE
Confidence 34678888875432 2356999999876 588876411 11222334445 677777665432 3458999
Q ss_pred ecCCCc-EEEE
Q 009435 274 DVDSGL-WTKV 283 (535)
Q Consensus 274 d~~~~~-W~~l 283 (535)
|+.++. ...+
T Consensus 365 ~~~~g~~~~~l 375 (710)
T 2xdw_A 365 DLATGALLKIF 375 (710)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEec
Confidence 986554 3444
No 95
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.61 E-value=3 Score=42.16 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=76.1
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
++....+..+++.|+.+ ..+.+||..+.+....- .+. ...-.++.+ ++++++.|+.++ .+.+
T Consensus 113 ~~~~~p~~~~l~s~s~D------g~i~vwd~~~~~~~~~l-~~h----~~~V~~v~~~~~~~~l~sgs~D~-----~i~i 176 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASED------ATIKVWDYETGDFERTL-KGH----TDSVQDISFDHSGKLLASCSADM-----TIKL 176 (410)
T ss_dssp EEEECSSSSEEEEEESS------SCEEEEETTTCCCCEEE-CCC----SSCEEEEEECTTSSEEEEEETTS-----CCCE
T ss_pred EEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-ecc----CCcEEEEEEcCCCCEEEEEeCCC-----eEEE
Confidence 34444334466777644 35888998876544311 111 111122222 466778887654 4667
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCC
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~ 192 (535)
||+.+.+-... +.........+.. ++..++.|+.+ ..+.++|+.+..-...-. + ... .
T Consensus 177 wd~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~-~--h~~-~ 236 (410)
T 1vyh_C 177 WDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRD-----------KTIKMWEVQTGYCVKTFT-G--HRE-W 236 (410)
T ss_dssp EETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEETT-----------SEEEEEETTTCCEEEEEE-C--CSS-C
T ss_pred EeCCCCceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEEe-C--CCc-c
Confidence 78766543221 1111111222222 45666777732 457788887765332211 0 000 1
Q ss_pred ceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEE
Q 009435 193 SHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (535)
Q Consensus 193 ~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~ 230 (535)
...+.. .++.+++.|+.++ .+.+||+.+....
T Consensus 237 v~~~~~~~~g~~l~s~s~D~------~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQ------TVRVWVVATKECK 269 (410)
T ss_dssp EEEEEECTTSSEEEEEETTS------CEEEEETTTCCEE
T ss_pred EEEEEECCCCCEEEEEcCCC------eEEEEECCCCcee
Confidence 111111 2567777877653 3778888776544
No 96
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.56 E-value=4.6 Score=43.25 Aligned_cols=255 Identities=16% Similarity=0.120 Sum_probs=127.3
Q ss_pred ccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcC--CCeEE-EeeccCCCCCCCCceEEEEE-----CC-EEEEEcCC
Q 009435 33 WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWS-QPVIKGSPPTPRDSHSCTTV-----GE-NLYVFGGT 103 (535)
Q Consensus 33 ~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~-~l~~~g~~P~~R~~hs~~~~-----~~-~Iyv~GG~ 103 (535)
.-|..+..++++++|+.+. .+.+.+||+. +.+-. ++. .|. .-..++.. ++ .+|+..-.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~~v~~i~-~G~-----~P~~ia~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPTTVAEIK-IGS-----EARSIETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp CEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCCEEEEEE-CCS-----EEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CccceEECCCCCEEEEEcC-------CCeEEEEECCCCCCcEeEEEe-cCC-----CCceeEEccccCCCCCEEEEEEcc
Confidence 3466666677888887542 2469999985 44322 222 122 11233333 34 56666422
Q ss_pred CCCCCCCcEEEEECCCCeEEe-ccccCC-------CCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCC
Q 009435 104 DGMNPLRDLHILDTSSHTWIS-PSVRGE-------GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 175 (535)
Q Consensus 104 ~~~~~~~~~~~yd~~t~~W~~-~~~~g~-------~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t 175 (535)
-+.+.++|..|.+=.+ +++.+. .|.+|.....+..++..+++-=. ....++..|...
T Consensus 265 -----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~----------~~g~v~~vd~~~ 329 (567)
T 1qks_A 265 -----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK----------ETGKILLVDYTD 329 (567)
T ss_dssp -----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET----------TTTEEEEEETTC
T ss_pred -----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec----------CCCeEEEEecCC
Confidence 2567888987765432 221110 12333333222223333333110 135677778776
Q ss_pred ccEEEeccCCCCCCCCCceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecC-CCCCCCceeeEEEEE-C
Q 009435 176 FVWKRATTSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMVLSPRAGHSTVAF-G 251 (535)
Q Consensus 176 ~~W~~~~~~~~~p~~r~~~s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~-g~~p~~R~~hs~v~~-~ 251 (535)
.....+.. .+..+.-|....- + ..+|+... ..+.+.++|.++++-...-.. +..|.+..+.....- +
T Consensus 330 ~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~ 400 (567)
T 1qks_A 330 LNNLKTTE---ISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF 400 (567)
T ss_dssp SSEEEEEE---EECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred Cccceeee---eeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCC
Confidence 55444432 2334445544433 3 34455432 246799999999875554444 555655444333222 3
Q ss_pred CEEEEEeccCCCCCccCcEEEEecCCC-----cEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEE
Q 009435 252 KNLFVFGGFTDSQNLYDDLYMIDVDSG-----LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMY 326 (535)
Q Consensus 252 ~~iyv~GG~~~~~~~~~dv~~yd~~~~-----~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~ 326 (535)
+.+|+.+-..+ +.|-++|..+. .|+.+.............. ....+..+||---.+......+.+.
T Consensus 401 g~v~~t~~~g~-----~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~----~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 401 GPVWATSHMGD-----DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK----THPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp EEEEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE----CCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred CcEEEeCCCCC-----CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE----eCCCCCeEEEecCCCCCcccCceEE
Confidence 56777653321 34888887663 2877765422111111111 1245667887532222211235678
Q ss_pred EEecccc
Q 009435 327 YLYTGLV 333 (535)
Q Consensus 327 ~l~~~~~ 333 (535)
.+++...
T Consensus 472 v~d~~~~ 478 (567)
T 1qks_A 472 VFDIKAM 478 (567)
T ss_dssp EEEGGGC
T ss_pred EEECCcc
Confidence 8887655
No 97
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.46 E-value=0.66 Score=45.80 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=93.0
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
++++++.||.+ ..+.++|..++.|........ .....-.+++.. ++++++.|+.+ ..+.++|
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~s~D-----------~~v~iw~ 89 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFD-----------ATTCIWK 89 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEECS-SCSSCEEEEEECTTSSEEEEEETT-----------SCEEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeecc-ccCCcEEEEEECCCCCEEEEEECC-----------CcEEEEE
Confidence 56677777754 357788888887754321100 111111122222 46677777742 3356677
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCC-cEEEeecCCCCCCCce-eeEEEE
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRA-GHSTVA 249 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~v~~~g~~p~~R~-~hs~v~ 249 (535)
..+..++.+...... . ..-.+++.. ++.+++.|+.++ .+.+||+.+. .+..+.. ...... -.+++.
T Consensus 90 ~~~~~~~~~~~~~~h-~-~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 90 KNQDDFECVTTLEGH-E-NEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSV---LNSHTQDVKHVVW 158 (345)
T ss_dssp ECCC-EEEEEEECCC-S-SCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEE---ECCCCSCEEEEEE
T ss_pred ccCCCeEEEEEccCC-C-CCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEE---ecCcCCCeEEEEE
Confidence 766665544321110 1 111122222 567788887654 3778887654 3333322 111111 112222
Q ss_pred -ECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC
Q 009435 250 -FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 250 -~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
-++.+++.|+... .+.+||..+..|..+..... .........+ ..++.+++.|+.+..
T Consensus 159 ~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~---h~~~v~~l~~--sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 159 HPSQELLASASYDD------TVKLYREEEDDWVCCATLEG---HESTVWSLAF--DPSGQRLASCSDDRT 217 (345)
T ss_dssp CSSSSCEEEEETTS------CEEEEEEETTEEEEEEEECC---CSSCEEEEEE--CTTSSEEEEEETTSC
T ss_pred CCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEecC---CCCceEEEEE--CCCCCEEEEEeCCCe
Confidence 2456777777543 48899999888876544321 1111222233 346677777876654
No 98
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=94.39 E-value=2.5 Score=40.89 Aligned_cols=212 Identities=7% Similarity=0.009 Sum_probs=103.7
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
.+++..++.||+.+..+ ..+++||+.+.+...+... ....-++++.- ++++|+....+. .....+++|
T Consensus 49 ~~~~~~~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~ 117 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFE------GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAA 117 (333)
T ss_dssp EEEECTTSCEEEEETTT------CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEE
T ss_pred CcEECCCCCEEEEECCC------CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCCC-CCCceEEEE
Confidence 33443344588776532 4699999998887765311 11122333332 567888753321 122479999
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
|+.+......-. .......-..++.. ++++|+...... .......++++|+.+.+...+..... ...
T Consensus 118 d~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~ 185 (333)
T 2dg1_A 118 TENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGY-----STNPLGGVYYVSPDFRTVTPIIQNIS-----VAN 185 (333)
T ss_dssp CTTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCB-----TTBCCEEEEEECTTSCCEEEEEEEES-----SEE
T ss_pred eCCCCEEEEEEc--cCccCCcccceEECCCCCEEEEecccc-----ccCCCceEEEEeCCCCEEEEeecCCC-----ccc
Confidence 998876542211 11111111222222 467887543210 11124579999988776665532100 112
Q ss_pred eEEee-CC-EEEEEecCCCCCcccCceEEEECCC--CcEEEeecCC--CCCCCceeeEEEE-ECCEEEEEeccCCCCCcc
Q 009435 195 TCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSG--MVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLY 267 (535)
Q Consensus 195 s~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~t--~~W~~v~~~g--~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~ 267 (535)
.++.. ++ .||+.... .+.+++||+.+ .....+.... ..+....-..++. -++++|+.... .
T Consensus 186 ~i~~~~dg~~l~v~~~~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~------~ 253 (333)
T 2dg1_A 186 GIALSTDEKVLWVTETT------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------Q 253 (333)
T ss_dssp EEEECTTSSEEEEEEGG------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------T
T ss_pred ceEECCCCCEEEEEeCC------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC------C
Confidence 33332 33 57776432 24588999853 2333221000 0111111122222 24677776532 1
Q ss_pred CcEEEEecCCCcEEEE
Q 009435 268 DDLYMIDVDSGLWTKV 283 (535)
Q Consensus 268 ~dv~~yd~~~~~W~~l 283 (535)
+.|++||++...-..+
T Consensus 254 ~~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 254 GRVLVFNKRGYPIGQI 269 (333)
T ss_dssp TEEEEECTTSCEEEEE
T ss_pred CEEEEECCCCCEEEEE
Confidence 3589999865443444
No 99
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.35 E-value=3.3 Score=40.77 Aligned_cols=156 Identities=9% Similarity=-0.020 Sum_probs=79.8
Q ss_pred CCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--CCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC
Q 009435 109 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (535)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~ 185 (535)
...++++|+.+.+...+.. ........... ++. |++... + ........++++|+.+..+..+..
T Consensus 167 ~~~l~~~d~~~g~~~~~~~-----~~~~~~~~~~sp~dg~~l~~~~~-~-----~~~~~~~~l~~~d~~~~~~~~l~~-- 233 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ-----DTAWLGHPIYRPFDDSTVGFCHE-G-----PHDLVDARMWLVNEDGSNVRKIKE-- 233 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE-----ESSCEEEEEEETTEEEEEEEEEC-S-----CSSSCSCCCEEEETTSCCCEESSC--
T ss_pred cceEEEEECCCCcEEeecc-----CCcccccceECCCCCCEEEEEec-C-----CCCCCCceEEEEECCCCceeEeec--
Confidence 3579999999887765541 11111222222 244 444332 1 011123578999998887777652
Q ss_pred CCCCCCCce-eEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCC
Q 009435 186 NPPSARDSH-TCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTD 262 (535)
Q Consensus 186 ~~p~~r~~~-s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~ 262 (535)
..+.... ..+. -+++.+++....... ....++++|+.+.+...+.. .+ ... ....- +++++++.+...
T Consensus 234 --~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~~---~~--~~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 234 --HAEGESCTHEFWIPDGSAMAYVSYFKGQ-TDRVIYKANPETLENEEVMV---MP--PCS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp --CCTTEEEEEEEECTTSSCEEEEEEETTT-CCEEEEEECTTTCCEEEEEE---CC--SEE-EEEECSSSSEEEEEECCC
T ss_pred --cCCCccccceEECCCCCEEEEEecCCCC-ccceEEEEECCCCCeEEeee---CC--CCC-CCccCCCCceEEEecCCc
Confidence 1111111 1222 245433333322111 12349999999988777654 22 112 22333 566666654210
Q ss_pred C----------CCccCcEEEEecCCCcEEEEeeC
Q 009435 263 S----------QNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 263 ~----------~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
. ......++++|+.++....+...
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp ----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred ceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence 0 01235699999998887766543
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=3.6 Score=41.91 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=77.0
Q ss_pred EEEE-cCCCEEEEECCcCCCCCCcceEEEEEcC--CCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcE
Q 009435 37 CNAI-KGGRFLYVFGGYGKDNCQTNQVHVFDTV--NQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 37 ~~~v-~~~~~Iyi~GG~~~~~~~~~~~~~yd~~--t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~ 112 (535)
++++ ++++.|++.|+.+ ..+.+||.. +.+....-..... +..-.+++.. +++.+++|+. ...+
T Consensus 107 ~~~~s~d~~~l~~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~-----~g~v 173 (450)
T 2vdu_B 107 NLRLTSDESRLIACADSD------KSLLVFDVDKTSKNVLKLRKRFCF--SKRPNAISIAEDDTTVIIADK-----FGDV 173 (450)
T ss_dssp EEEECTTSSEEEEEEGGG------TEEEEEEECSSSSSCEEEEEEEEC--SSCEEEEEECTTSSEEEEEET-----TSEE
T ss_pred EEEEcCCCCEEEEEECCC------CeEEEEECcCCCCceeeeeecccC--CCCceEEEEcCCCCEEEEEeC-----CCcE
Confidence 3444 4566666777754 457788876 5443332100001 1111122222 4566666654 2457
Q ss_pred EEEECCCCeEEeccccCCCCCCCC-CeEE-EEEC---CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCC
Q 009435 113 HILDTSSHTWISPSVRGEGPEARE-GHSA-ALVG---KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (535)
Q Consensus 113 ~~yd~~t~~W~~~~~~g~~p~~r~-~hs~-~~~~---~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~ 187 (535)
+.++..+........ ..+..... -.++ ...+ +++++.|+.+ ..+.+||+.+.........+
T Consensus 174 ~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~-- 239 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG-- 239 (450)
T ss_dssp EEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETT-----------SCEEEEEESCTTCEEEECCC--
T ss_pred EEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCC-----------CcEEEEECCCCceeeeeecC--
Confidence 888876654321000 00110111 1122 2234 6677777732 35778887766533221111
Q ss_pred CCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEE
Q 009435 188 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (535)
Q Consensus 188 p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~ 231 (535)
........+.. ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKNLS 276 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCEEE
T ss_pred CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcEee
Confidence 11111222222 67777787754 358899998876433
No 101
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.25 E-value=2.6 Score=46.00 Aligned_cols=224 Identities=10% Similarity=-0.007 Sum_probs=107.1
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCC-C--------------CC------CceEEEEE
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPP-T--------------PR------DSHSCTTV 93 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P-~--------------~R------~~hs~~~~ 93 (535)
......++++.|+..+..+.. .....++++|..+++...+....... . .| ....+..-
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~-~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSD-RNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSC-TTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCceEecCCCEEEEEeccCCC-CcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 334444566655444331321 12357999999998877654211111 0 00 01111122
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCC---eEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSH---TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~---~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~ 170 (535)
+++.++++.. ..++++|+.+. .-..+.. . ..........-+++.++++. .+.+++
T Consensus 119 Dg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~---~-~~~~~~~~~SPDG~~la~~~------------~~~i~~ 176 (741)
T 2ecf_A 119 DAQRLLFPLG------GELYLYDLKQEGKAAVRQLTH---G-EGFATDAKLSPKGGFVSFIR------------GRNLWV 176 (741)
T ss_dssp TSSEEEEEET------TEEEEEESSSCSTTSCCBCCC---S-SSCEEEEEECTTSSEEEEEE------------TTEEEE
T ss_pred CCCEEEEEeC------CcEEEEECCCCCcceEEEccc---C-CcccccccCCCCCCEEEEEe------------CCcEEE
Confidence 4554444432 68999999877 4333221 1 11111112222455555544 126999
Q ss_pred EECCCccEEEeccCCCCCC-------------CCCceeEEeeCCEEEEEecCCCCC------------------------
Q 009435 171 LNTETFVWKRATTSGNPPS-------------ARDSHTCSSWKNKIIVIGGEDGHD------------------------ 213 (535)
Q Consensus 171 yd~~t~~W~~~~~~~~~p~-------------~r~~~s~~~~~~~lyv~GG~~~~~------------------------ 213 (535)
+|+.+.+...+...+.... .+.......-+++.++++..+...
T Consensus 177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred EecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 9999888777653221100 000111222245544444332210
Q ss_pred ---cccCceEEEECCC-CcEEEeecCCCCCCCce-eeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 214 ---YYLSDVHILDTDT-LTWKELNTSGMVLSPRA-GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 214 ---~~~~~i~~yd~~t-~~W~~v~~~g~~p~~R~-~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
.....++++|+.+ .+-..+... ...... ...+. -+++.+++..... .....+|+++|+.+.....+..
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~-~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSR-DQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEET-TSSEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCeeEEEEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEecc-cCCeEEEEEEECCCCceEEEEE
Confidence 0122688899988 776555431 011111 12223 4444444443321 1224679999999988776654
No 102
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.13 E-value=3 Score=38.63 Aligned_cols=188 Identities=11% Similarity=0.025 Sum_probs=95.4
Q ss_pred cceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCC-CeEEeccccCCCCC-CC
Q 009435 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSS-HTWISPSVRGEGPE-AR 135 (535)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~g~~p~-~r 135 (535)
...++++|..+++...+... ...-.+++.. +++.+++++ -..++++|+.+ .+...+.. ... ..
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~---~~~~~~ 86 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT-----PELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDT---GFATIC 86 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE-----SSCCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCC---TTCCCB
T ss_pred ceeEEEEeCCCCceeeeccC-----CcceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEecc---cccccc
Confidence 36799999999887765421 1111222222 455555654 24799999988 76654431 111 11
Q ss_pred CCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-CC-EEEEEecCCCCC
Q 009435 136 EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHD 213 (535)
Q Consensus 136 ~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~-~lyv~GG~~~~~ 213 (535)
.......-+++.+++++.... ....++.++..+.....+... . . ...+... ++ .|++.++.++
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~---~-~--~~~~~~spdg~~l~~~~~~~~-- 151 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEF-------GKSAIYLLPSTGGTPRLMTKN---L-P--SYWHGWSPDGKSFTYCGIRDQ-- 151 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTT-------SSCEEEEEETTCCCCEECCSS---S-S--EEEEEECTTSSEEEEEEEETT--
T ss_pred ccceEECCCCCEEEEEEeCCC-------CcceEEEEECCCCceEEeecC---C-C--ccceEECCCCCEEEEEECCCC--
Confidence 122222234555555552111 246788899887765555421 1 1 2222222 34 4554554332
Q ss_pred cccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEe
Q 009435 214 YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 214 ~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (535)
...+|.+|..+.....+... ..........-+++.+++++..+ -...+|.+++.......+.
T Consensus 152 --~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~---~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 152 --VFDIYSMDIDSGVETRLTHG----EGRNDGPDYSPDGRWIYFNSSRT---GQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp --EEEEEEEETTTCCEEECCCS----SSCEEEEEECTTSSEEEEEECTT---SSCEEEEEETTSSCEEECC
T ss_pred --ceEEEEEECCCCcceEcccC----CCccccceECCCCCEEEEEecCC---CCccEEEECCCCCCcEEEe
Confidence 13578888888777665431 11122222222444444443211 1345888887777665553
No 103
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.03 E-value=5.2 Score=43.17 Aligned_cols=126 Identities=15% Similarity=0.128 Sum_probs=69.3
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEEC-CCC--eEEeccccCC--CCCCC---CCeEEEE--ECCE----EEEEcCCC
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDT-SSH--TWISPSVRGE--GPEAR---EGHSAAL--VGKR----LFIFGGCG 154 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~-~t~--~W~~~~~~g~--~p~~r---~~hs~~~--~~~~----lyv~GG~~ 154 (535)
+-++.+++||+.+.. ...++++|. .|. .|+....... .+.++ ...+.++ .+++ ||+...
T Consensus 57 tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 445679999998752 246999999 776 4876331110 00011 1223344 5666 777543
Q ss_pred CCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCc--EE
Q 009435 155 KSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WK 230 (535)
Q Consensus 155 ~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~ 230 (535)
...++.+|..+. .|+.-..... .......+-++.++.+|+-.+.. +......++.||.++.+ |+
T Consensus 130 ----------dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~-e~g~~g~v~A~D~~TG~~~W~ 197 (599)
T 1w6s_A 130 ----------DGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGA-ELGVRGYLTAYDVKTGEQVWR 197 (599)
T ss_dssp ----------TSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCG-GGTCCCEEEEEETTTCCEEEE
T ss_pred ----------CCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEECCEEEEEeccc-ccCCCCeEEEEECCCCcEEEE
Confidence 246899998776 4876431100 00011223345688877643211 11123569999998765 87
Q ss_pred Eee
Q 009435 231 ELN 233 (535)
Q Consensus 231 ~v~ 233 (535)
.-.
T Consensus 198 ~~~ 200 (599)
T 1w6s_A 198 AYA 200 (599)
T ss_dssp EES
T ss_pred EcC
Confidence 654
No 104
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.99 E-value=0.17 Score=50.27 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=67.1
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (535)
+.+++.|+.+ ..+.+||..++.|..+. .+......-.++.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 23 g~~l~~~~~d------~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~~~~ 88 (377)
T 3dwl_C 23 RTEFVTTTAT------NQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKRPDG 88 (377)
T ss_dssp SSEEECCCSS------SCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC------
T ss_pred CCEEEEecCC------CEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCC
Confidence 3466666643 35778888888877654 22222222233333 45677777654 358888888766
Q ss_pred -EEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc-EEEeccCCCCCCCCCceeEE
Q 009435 122 -WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATTSGNPPSARDSHTCS 197 (535)
Q Consensus 122 -W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~-W~~~~~~~~~p~~r~~~s~~ 197 (535)
|...... .........+.. ++++++.|+.+ ..+.++|+.+.. |..+..... +....-.+++
T Consensus 89 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~ 153 (377)
T 3dwl_C 89 TWKQTLVL---LRLNRAATFVRWSPNEDKFAVGSGA-----------RVISVCYFEQENDWWVSKHLKR-PLRSTILSLD 153 (377)
T ss_dssp CCCCEEEC---CCCSSCEEEEECCTTSSCCEEEESS-----------SCEEECCC-----CCCCEEECS-SCCSCEEEEE
T ss_pred ceeeeeEe---cccCCceEEEEECCCCCEEEEEecC-----------CeEEEEEECCcccceeeeEeec-ccCCCeEEEE
Confidence 4333211 111111122222 45666666632 346677776553 222211101 1111122222
Q ss_pred ee-CCEEEEEecCCCCCcccCceEEEECCCC
Q 009435 198 SW-KNKIIVIGGEDGHDYYLSDVHILDTDTL 227 (535)
Q Consensus 198 ~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~ 227 (535)
.. ++.+++.|+.++ .+.+||+.+.
T Consensus 154 ~~~~~~~l~~~~~d~------~i~iwd~~~~ 178 (377)
T 3dwl_C 154 WHPNNVLLAAGCADR------KAYVLSAYVR 178 (377)
T ss_dssp ECTTSSEEEEEESSS------CEEEEEECCS
T ss_pred EcCCCCEEEEEeCCC------EEEEEEEEec
Confidence 22 566778887653 3778887543
No 105
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.98 E-value=4.3 Score=38.49 Aligned_cols=249 Identities=12% Similarity=0.069 Sum_probs=122.6
Q ss_pred ccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCc
Q 009435 33 WGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRD 111 (535)
Q Consensus 33 ~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~ 111 (535)
.....+..++++.||+.+..+ ..+++||+.+. ...+.. +.. .-.+++.- ++++|+.... ...
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~----~~~-~~~~l~~~~dg~l~v~~~~-----~~~ 91 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH----PSH-HQNGHCLNKQGHLIACSHG-----LRR 91 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGG------TEEEEEETTSC-EEEEES----SCS-SEEEEEECTTCCEEEEETT-----TTE
T ss_pred cccCCeEeCCCCEEEEEeCCC------CEEEEEECCCC-eEEEEC----CCC-CcceeeECCCCcEEEEecC-----CCe
Confidence 445555566666688876532 46999999988 665442 111 12233332 5678776532 246
Q ss_pred EEEEECCCCeEEecccc-CCCCCCCCCeEEEEECCEEEEE----cCCCCC--CCCCCceeeeeEEEEECCCccEEEeccC
Q 009435 112 LHILDTSSHTWISPSVR-GEGPEAREGHSAALVGKRLFIF----GGCGKS--SNTNDEVYYNDLYILNTETFVWKRATTS 184 (535)
Q Consensus 112 ~~~yd~~t~~W~~~~~~-g~~p~~r~~hs~~~~~~~lyv~----GG~~~~--~~~~~~~~~n~v~~yd~~t~~W~~~~~~ 184 (535)
+++||+.+++.+.+... ...+..+....++.-++++|+. |..... ...........++++|+. .+...+...
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD 170 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC
Confidence 99999988877654311 0111111222233335788886 331000 000001113478999987 555554321
Q ss_pred CCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECC-CCcE-EEeecCCCCCCCceeeEEEEECCEEEEEeccC
Q 009435 185 GNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTW-KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 261 (535)
Q Consensus 185 ~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W-~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~ 261 (535)
.. ....++.. ++++++.... .+.+++||+. +.+. ...... ..........++.-+++|||..+
T Consensus 171 --~~---~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~-- 236 (296)
T 3e5z_A 171 --RV---KPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAG-- 236 (296)
T ss_dssp --CS---SEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEET--
T ss_pred --CC---CCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcC--
Confidence 11 11233332 5555544332 2458899886 5555 211110 01111111222333577888761
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEeccccc
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 334 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~~~~ 334 (535)
+.|.+||+.......+... ..| ..+++....++.||+... +.+|++++....
T Consensus 237 ------~~v~~~~~~g~~~~~~~~~-~~~------~~~~f~~~d~~~L~v~t~--------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 237 ------DGVHVLTPDGDELGRVLTP-QTT------SNLCFGGPEGRTLYMTVS--------TEFWSIETNVRG 288 (296)
T ss_dssp ------TEEEEECTTSCEEEEEECS-SCC------CEEEEESTTSCEEEEEET--------TEEEEEECSCCB
T ss_pred ------CeEEEECCCCCEEEEEECC-CCc------eeEEEECCCCCEEEEEcC--------CeEEEEEccccc
Confidence 3499999986555544432 111 222222233456776531 247888765444
No 106
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=93.93 E-value=4.7 Score=40.64 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=33.1
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
+.+++.|+.++ .+.+||+.+..-...-. + .... -.+++. -++++++.||.+ ..|.+||+.+..
T Consensus 308 g~~l~sgs~D~------~i~iwd~~~~~~~~~~~-~--h~~~-v~~v~~~~~g~~l~s~s~D------~~i~vwd~~~~~ 371 (410)
T 1vyh_C 308 GPFLLSGSRDK------TIKMWDVSTGMCLMTLV-G--HDNW-VRGVLFHSGGKFILSCADD------KTLRVWDYKNKR 371 (410)
T ss_dssp CCEEEEEETTS------EEEEEETTTTEEEEEEE-C--CSSC-EEEEEECSSSSCEEEEETT------TEEEEECCTTSC
T ss_pred CCEEEEEeCCC------eEEEEECCCCceEEEEE-C--CCCc-EEEEEEcCCCCEEEEEeCC------CeEEEEECCCCc
Confidence 45677776543 48889988764222111 1 1111 112222 245666667643 248889987654
No 107
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=93.78 E-value=4.4 Score=37.94 Aligned_cols=197 Identities=6% Similarity=-0.059 Sum_probs=103.5
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
.+++..++.||+.... .+.+.+||+. .+...+..... ...-++++.. ++.+|+.... ...+++|
T Consensus 24 ~i~~d~~g~l~v~~~~------~~~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~ 88 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHK------ANKISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGDIWFTENG-----ANKIGKL 88 (300)
T ss_dssp EEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSCEEEEETT-----TTEEEEE
T ss_pred eeeECCCCCEEEEcCC------CCeEEEECCC-CceEEEECCCC---CCcceeEEECCCCCEEEEecC-----CCeEEEE
Confidence 4444444558885431 2468999988 76666442111 1122233332 4678887532 2468999
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
|+. .++....... ....-+.++.. ++++|+.... .+.++++|+. .+........ ....-+
T Consensus 89 d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~-g~~~~~~~~~---~~~~~~ 149 (300)
T 2qc5_A 89 SKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----------GDRIGKLTAD-GTIYEYDLPN---KGSYPA 149 (300)
T ss_dssp CTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----------TTEEEEECTT-SCEEEEECSS---TTCCEE
T ss_pred CCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----------CCeEEEECCC-CCEEEccCCC---CCCCce
Confidence 988 6665443211 11222334433 4678886541 2458889987 6655443111 111223
Q ss_pred eEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEE
Q 009435 195 TCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 195 s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
.++.. +++||+.... .+.+++||+ +.++..+.... ....-..++.. ++.+|+.... .+.+++
T Consensus 150 ~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~------~~~i~~ 213 (300)
T 2qc5_A 150 FITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPLPT---NAAAPVGITSGNDGALWFVEIM------GNKIGR 213 (300)
T ss_dssp EEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETT------TTEEEE
T ss_pred eEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeCCC---CCCCcceEEECCCCCEEEEccC------CCEEEE
Confidence 33332 5668876432 245899998 66666654311 11112223332 4678876432 234899
Q ss_pred EecCCCcEEEEe
Q 009435 273 IDVDSGLWTKVI 284 (535)
Q Consensus 273 yd~~~~~W~~l~ 284 (535)
||+ ++.+....
T Consensus 214 ~~~-~g~~~~~~ 224 (300)
T 2qc5_A 214 ITT-TGEISEYD 224 (300)
T ss_dssp ECT-TCCEEEEE
T ss_pred EcC-CCcEEEEE
Confidence 998 66666553
No 108
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.69 E-value=9.1 Score=41.32 Aligned_cols=194 Identities=10% Similarity=0.039 Sum_probs=98.5
Q ss_pred cceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC-eEEeccccCCCC-CC
Q 009435 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH-TWISPSVRGEGP-EA 134 (535)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p-~~ 134 (535)
...++++|..+.+-..+.. ..........+.. +++.++++..+.......++++|+.+. .+..+....... ..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 3579999999887665431 1111122222232 455444444433334458999999988 665543211100 00
Q ss_pred CCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee--C-CEEEEEecC
Q 009435 135 REGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--K-NKIIVIGGE 209 (535)
Q Consensus 135 r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~--~-~~lyv~GG~ 209 (535)
......... ++++++.+..+ + ...+|.+|........+... .. ....+..+ + +.||+.+..
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~------g---~~~l~~~~~~~~~~~~l~~~---~~--~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRD------G---WNHLYLYDTTGRLIRQVTKG---EW--EVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTT------S---SCEEEEEETTSCEEEECCCS---SS--CEEEEEEECTTSSEEEEEESS
T ss_pred ccCCceeecCCCCEEEEEEccC------C---ccEEEEEECCCCEEEecCCC---Ce--EEEeeeEEcCCCCEEEEEecC
Confidence 011122333 56755555421 1 35688888777767666421 11 11121222 3 456665543
Q ss_pred CCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 210 DGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 210 ~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
++. ....++.+|..+...+.+.. .. ..+++.. -+++.+++..... ....+++++|+.+++
T Consensus 377 ~~~--~~~~l~~~d~~~~~~~~l~~-----~~-~~~~~~~spdg~~l~~~~~~~--~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 377 ASP--LERHFYCIDIKGGKTKDLTP-----ES-GMHRTQLSPDGSAIIDIFQSP--TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCT--TCBEEEEEETTCCCCEESCC-----SS-SEEEEEECTTSSEEEEEEECS--SCSCEEEEEESSSCE
T ss_pred CCC--ceEEEEEEEcCCCCceeccC-----CC-ceEEEEECCCCCEEEEEecCC--CCCcEEEEEECCCCe
Confidence 321 23468999998877665542 11 1233332 2455555554322 123569999998876
No 109
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.64 E-value=1.4 Score=43.65 Aligned_cols=107 Identities=9% Similarity=-0.010 Sum_probs=50.8
Q ss_pred eeEEEEECCCccEEEeccCCC-C-CCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCC---
Q 009435 166 NDLYILNTETFVWKRATTSGN-P-PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL--- 239 (535)
Q Consensus 166 n~v~~yd~~t~~W~~~~~~~~-~-p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p--- 239 (535)
..+.+||+.+.+....-.... . +....-.+++.. ++.+++.|+.++. ...+.+||+.+.+-...-.....+
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC------
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC---CceEEEEECCCCcccceeccCcccccc
Confidence 458889988765433221100 0 001111222222 5667777765411 145889999876533222100000
Q ss_pred ------CCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 240 ------SPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 240 ------~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
....-.++... ++.+++.|+.+ ..|.+||+.+.+-.
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWD------GKLRFWDVKTKERI 326 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCC------CeEEEEEcCCCcee
Confidence 11111222222 45677777643 34899999877543
No 110
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.47 E-value=5.1 Score=39.53 Aligned_cols=224 Identities=13% Similarity=0.065 Sum_probs=105.4
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEe---eccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCC
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQP---VIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLR 110 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l---~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~ 110 (535)
.+++...++.| +.|+.+ ..+.+||..+++-... ...+. ...-.++.+ +++.++.|+.++
T Consensus 86 ~~~~~s~d~~l-~~~s~d------g~v~lWd~~~~~~~~~~~~~~~~H----~~~V~~v~~spdg~~l~sgs~d~----- 149 (344)
T 4gqb_B 86 ADLTWVGERGI-LVASDS------GAVELWELDENETLIVSKFCKYEH----DDIVSTVSVLSSGTQAVSGSKDI----- 149 (344)
T ss_dssp EEEEEETTTEE-EEEETT------SEEEEEEECTTSSCEEEEEEEECC----SSCEEEEEECTTSSEEEEEETTS-----
T ss_pred EEEEEeCCCeE-EEEECC------CEEEEEeccCCCceeEeeccccCC----CCCEEEEEECCCCCEEEEEeCCC-----
Confidence 34444445544 455533 3577888876642211 10111 111122222 566777777653
Q ss_pred cEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCC
Q 009435 111 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV--G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (535)
Q Consensus 111 ~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~ 187 (535)
.+.++|+.+++-...- .+ ....-..+.. + ..+++.|+.+ ..+.++|+.+.+-...-. .
T Consensus 150 ~i~iwd~~~~~~~~~~-~~----h~~~V~~~~~~~~~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~---~ 210 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSY-RA----HAAQVTCVAASPHKDSVFLSCSED-----------NRILLWDTRCPKPASQIG---C 210 (344)
T ss_dssp CEEEEETTTTEEEEEE-CC----CSSCEEEEEECSSCTTEEEEEETT-----------SCEEEEETTSSSCEEECC----
T ss_pred eEEEEECCCCcEEEEE-cC----cCCceEEEEecCCCCCceeeeccc-----------cccccccccccceeeeee---c
Confidence 5889999887643211 11 1111112222 2 3577777732 347788887765332210 0
Q ss_pred CCCCCce-eEEee--CCEEEEEecCCCCCcccCceEEEECCCCcE-EEeecCCCCCCCceeeEEEEE-C-CEEEEEeccC
Q 009435 188 PSARDSH-TCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTW-KELNTSGMVLSPRAGHSTVAF-G-KNLFVFGGFT 261 (535)
Q Consensus 188 p~~r~~~-s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W-~~v~~~g~~p~~R~~hs~v~~-~-~~iyv~GG~~ 261 (535)
....... +++.. ++.+++.|+.++ .+.+||+.+.+- ..+.. ....-.+++.. + .++++.|+.+
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg------~v~~wd~~~~~~~~~~~~-----h~~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENG------TVSLVDTKSTSCVLSSAV-----HSQCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTS------EEEEEESCC--CCEEEEC-----CSSCEEEEEECSSSSCCEEEEETT
T ss_pred ceeeccceeeeecCCCCcceEEeccCC------cEEEEECCCCcEEEEEcC-----CCCCEEEEEEccCCCeEEEEEeCC
Confidence 1111111 22222 456888887553 478889876532 11211 01111222222 2 3566667653
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
. .|.+||..+..-..+ .+. .....++.+. ..+..+++.||.+..
T Consensus 280 ~------~i~vwd~~~~~~~~~--~~H----~~~V~~v~~s-p~~~~llas~s~D~~ 323 (344)
T 4gqb_B 280 C------SLAVLDSSLSELFRS--QAH----RDFVRDATWS-PLNHSLLTTVGWDHQ 323 (344)
T ss_dssp S------CEEEECTTCCEEEEE--CCC----SSCEEEEEEC-SSSTTEEEEEETTSC
T ss_pred C------eEEEEECCCCcEEEE--cCC----CCCEEEEEEe-CCCCeEEEEEcCCCe
Confidence 2 488999988754333 211 1112222231 235567778887654
No 111
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.44 E-value=6.3 Score=38.62 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=58.5
Q ss_pred eeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-CCE-EEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCc
Q 009435 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 242 (535)
Q Consensus 165 ~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~-lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R 242 (535)
...++++|+.+.+...+... .....+....- ++. |++.. ..........|+.+|+.+..+..+.. . .+...
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~~-~-~~~~~ 239 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVRKIKE-H-AEGES 239 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCEESSC-C-CTTEE
T ss_pred cceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCceeEeec-c-CCCcc
Confidence 45799999998887776521 11112222222 344 44433 22211123579999998887776643 0 11101
Q ss_pred eeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeC
Q 009435 243 AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 243 ~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
..+....-+++.+++...... .....|+++|+.++....+...
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~~ 282 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKG-QTDRVIYKANPETLENEEVMVM 282 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETT-TCCEEEEEECTTTCCEEEEEEC
T ss_pred ccceEECCCCCEEEEEecCCC-CccceEEEEECCCCCeEEeeeC
Confidence 111122224554444433221 1113399999999887776543
No 112
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.44 E-value=6.3 Score=38.65 Aligned_cols=224 Identities=11% Similarity=0.021 Sum_probs=107.2
Q ss_pred EEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECC-EEEEEcCCCCCCCCCcEEEEEC
Q 009435 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGE-NLYVFGGTDGMNPLRDLHILDT 117 (535)
Q Consensus 39 ~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~Iyv~GG~~~~~~~~~~~~yd~ 117 (535)
..+++++|++....+. ...+|++|..+.+-.++. ..+.......+..-++ +|++... + ..++++|+
T Consensus 43 ~SpDg~~l~~~~~~~g----~~~l~~~d~~~g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~-~-----~~l~~~d~ 109 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDG----PWNYYLLDLNTQVATQLT---EGRGDNTFGGFLSPDDDALFYVKD-G-----RNLMRVDL 109 (388)
T ss_dssp BCTTSCEEEEEECTTS----SCEEEEEETTTCEEEECC---CSSCBCSSSCEECTTSSEEEEEET-T-----TEEEEEET
T ss_pred CCCCCCEEEEEEcCCC----CceEEEEeCCCCceEEee---eCCCCCccceEEcCCCCEEEEEeC-C-----CeEEEEEC
Confidence 3456665655433221 247999999998887754 2121111111222244 4444432 1 47999999
Q ss_pred CCCeEEeccccCCCCCCCCCeEEEE--ECCEEEEEcCCC-CC--CCC--------CCceeeeeEEEEECCCccEEEeccC
Q 009435 118 SSHTWISPSVRGEGPEAREGHSAAL--VGKRLFIFGGCG-KS--SNT--------NDEVYYNDLYILNTETFVWKRATTS 184 (535)
Q Consensus 118 ~t~~W~~~~~~g~~p~~r~~hs~~~--~~~~lyv~GG~~-~~--~~~--------~~~~~~n~v~~yd~~t~~W~~~~~~ 184 (535)
.+.+-..+.. .+.......... .++++++.--.. .. ... ........++++|+.+.+-..+...
T Consensus 110 ~~g~~~~~~~---~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 186 (388)
T 3pe7_A 110 ATLEENVVYQ---VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE 186 (388)
T ss_dssp TTCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred CCCcceeeee---chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence 9887554431 222211111111 133333210000 00 000 0011236899999998877766522
Q ss_pred CCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCC-ceeeEEEEECCEEEEEeccCC
Q 009435 185 GNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP-RAGHSTVAFGKNLFVFGGFTD 262 (535)
Q Consensus 185 ~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~-R~~hs~v~~~~~iyv~GG~~~ 262 (535)
.....+....- +++.+++............++.+|+.+...+.+.. .... ...+....-+++.+++.....
T Consensus 187 ----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 187 ----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp ----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred ----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEEEecCC
Confidence 11222333333 45555554432222234579999998877666543 1111 111222222454333333221
Q ss_pred CCCccCcEEEEecCCCcEEEEeeC
Q 009435 263 SQNLYDDLYMIDVDSGLWTKVITT 286 (535)
Q Consensus 263 ~~~~~~dv~~yd~~~~~W~~l~~~ 286 (535)
. .....|+++|+.+++-+.+...
T Consensus 260 ~-~~~~~l~~~d~~~g~~~~l~~~ 282 (388)
T 3pe7_A 260 G-SPDRFIYSADPETLENRQLTSM 282 (388)
T ss_dssp T-CCCEEEEEECTTTCCEEEEEEE
T ss_pred C-CCcceEEEEecCCCceEEEEcC
Confidence 1 1112499999999887766543
No 113
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=93.42 E-value=5.3 Score=43.53 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=100.5
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCC--------CCCCcEEEEECCCCeEE--eccccC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM--------NPLRDLHILDTSSHTWI--SPSVRG 129 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~--------~~~~~~~~yd~~t~~W~--~~~~~g 129 (535)
..++++|..+++.... ...+.......+-.-+++.++++..+.. ....+++++++.+..-. .+- .
T Consensus 147 ~~i~v~dl~tg~~~~~---~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-~- 221 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKV---DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH-E- 221 (695)
T ss_dssp CEEEEEETTTCCBCSS---CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE-C-
T ss_pred EEEEEEECCCCCCcCC---cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE-e-
Confidence 5799999999876411 1122212121222225666666655432 23456999999876521 111 1
Q ss_pred CCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEec
Q 009435 130 EGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGG 208 (535)
Q Consensus 130 ~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG 208 (535)
....+....+... -+++.+++..... ...++++.+|..+..|..+.... .. ....+..++.+|+...
T Consensus 222 ~~~~~~~~~~~~~SpDG~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~l~~~~----~~-~~~~~~~~g~l~~~s~ 289 (695)
T 2bkl_A 222 RTGDPTTFLQSDLSRDGKYLFVYILRG-------WSENDVYWKRPGEKDFRLLVKGV----GA-KYEVHAWKDRFYVLTD 289 (695)
T ss_dssp CCCCTTCEEEEEECTTSCCEEEEEEET-------TTEEEEEEECTTCSSCEEEEECS----SC-CEEEEEETTEEEEEEC
T ss_pred cCCCCEEEEEEEECCCCCEEEEEEeCC-------CCceEEEEEcCCCCceEEeecCC----Cc-eEEEEecCCcEEEEEC
Confidence 1111222222222 2344444433110 03568888888777888886321 11 1222224555666544
Q ss_pred CCCCCcccCceEEEECCCCc---EEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 209 EDGHDYYLSDVHILDTDTLT---WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~---W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
.+. ....|+.+|+.+.. |+.+.... + ......+...++.+++...... ...+|++++....-.
T Consensus 290 ~~~---~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 290 EGA---PRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA----TSEVRVATLKGKPVR 355 (695)
T ss_dssp TTC---TTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT----EEEEEEEETTCCEEE
T ss_pred CCC---CCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCeeE
Confidence 321 23569999987765 88876411 1 2222233344888877765432 356899997654333
No 114
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.35 E-value=6.9 Score=38.80 Aligned_cols=231 Identities=17% Similarity=0.137 Sum_probs=104.9
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEEC
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~ 117 (535)
+.+..++..++.|+.+ ..+.++|..+.+-...- .+.. ......+..-+++.++.||.++ .+.+||+
T Consensus 72 ~~~sp~~~~l~s~s~D------~~v~iWd~~~~~~~~~~-~~h~--~~v~~~~~s~~g~~las~~~d~-----~v~iw~~ 137 (380)
T 3iz6_a 72 LDWTPEKNWIVSASQD------GRLIVWNALTSQKTHAI-KLHC--PWVMECAFAPNGQSVACGGLDS-----ACSIFNL 137 (380)
T ss_dssp EEECTTSSCEEEEETT------SEEEEEETTTTEEEEEE-ECCC--TTCCCCEECTTSSEEEECCSSS-----CCEEEEC
T ss_pred EEEcCCCCEEEEEeCC------CeEEEEECCCCccceEE-ecCC--CCEEEEEECCCCCEEEEeeCCC-----cEEEEEC
Confidence 3333333355666643 45888998877644321 1111 1111122223567778888653 4666776
Q ss_pred CCCeEEeccccCCCCC--CCCCeEE-----EEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC
Q 009435 118 SSHTWISPSVRGEGPE--AREGHSA-----ALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 188 (535)
Q Consensus 118 ~t~~W~~~~~~g~~p~--~r~~hs~-----~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p 188 (535)
.+..-.. +..+. ...+|.. ... ++..++.|+. ...+.++|+.+..-...-.. ..+
T Consensus 138 ~~~~~~~----~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~-----------D~~i~~wd~~~~~~~~~~~~-~~~ 201 (380)
T 3iz6_a 138 SSQADRD----GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG-----------DQTCVLWDVTTGQRISIFGS-EFP 201 (380)
T ss_dssp CCCSSCC----CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT-----------TSCEEEECTTTCCEEEEECC-CSS
T ss_pred CCCcccc----CCccceeeccCCCcceEEEEEecCCCCEEEEECC-----------CCcEEEEEcCCCcEEEEeec-ccC
Confidence 5432110 01111 1112211 111 1334555553 23467788877654433211 111
Q ss_pred CCCC--ceeEEe--eCCEEEEEecCCCCCcccCceEEEECCCC--cEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccC
Q 009435 189 SARD--SHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFT 261 (535)
Q Consensus 189 ~~r~--~~s~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t~--~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~ 261 (535)
.... ..++.. .++.+++.|+.++ .+.+||+... .-..+... ... -.+++.. ++..++.|+.+
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~~h----~~~-v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYHGH----EGD-INSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEECCC----SSC-CCEEEECTTSSEEEEECSS
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEECCc----CCC-eEEEEEecCCCeEEEEcCC
Confidence 1111 112222 2567888888664 3788887532 22222110 011 1122222 45677777754
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCC--CCceeeeeeeecccCCCEEEEEcccCC
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGP--SARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p--~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
. .+.+||+.+..-...-...... .......++.+ ..++.+++.|+.+.
T Consensus 271 ~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 271 G------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF--SISGRLLFAGYSNG 320 (380)
T ss_dssp S------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE--CSSSSEEEEECTTS
T ss_pred C------eEEEEECCCCcEEEEecccccccccccCceEEEEE--CCCCCEEEEEECCC
Confidence 3 4899999887544332221100 01111222223 34667777776554
No 115
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.34 E-value=3.9 Score=40.68 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=73.0
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE--ECCEEEEEcCCCCCCCCCcEEEEECC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
++++ .++.|+.+ ..+.+||..+.+-.. ..... ....+.. .++++++.|+.+ ..+.+||+.
T Consensus 66 ~~g~-~l~~~~~d------~~v~i~d~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 127 (420)
T 3vl1_A 66 KVGS-HLYKARLD------GHDFLFNTIIRDGSK-----MLKRA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSN 127 (420)
T ss_dssp EEET-TEEEEEET------TEEEEEECCSEETTT-----TSCSC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTT
T ss_pred ecCC-eEEEEEcC------CcEEEEEecccceee-----EEecC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCC
Confidence 3344 34555543 468888876543222 11111 1112222 266778888754 358889988
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE-EeccCCCCCCCCCceeE
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSARDSHTC 196 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~-~~~~~~~~p~~r~~~s~ 196 (535)
+.+-...- ......-.+++.. ++++++.|+. ...+.+||+.+.+-. .+.. ....-.++
T Consensus 128 ~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~ 187 (420)
T 3vl1_A 128 FNLQREID----QAHVSEITKLKFFPSGEALISSSQ-----------DMQLKIWSVKDGSNPRTLIG-----HRATVTDI 187 (420)
T ss_dssp SCEEEEET----TSSSSCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCCCEEEEC-----CSSCEEEE
T ss_pred Ccceeeec----ccccCccEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCcCceEEcC-----CCCcEEEE
Confidence 76643321 0111112223332 4566667763 245788888765321 1110 01111222
Q ss_pred Eee-CCEEEEEecCCCCCcccCceEEEECCCCcEE
Q 009435 197 SSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (535)
Q Consensus 197 ~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~ 230 (535)
+.. ++.+++.|+.++ .+.+||+.+.+-.
T Consensus 188 ~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 188 AIIDRGRNVLSASLDG------TIRLWECGTGTTI 216 (420)
T ss_dssp EEETTTTEEEEEETTS------CEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEcCCC------cEEEeECCCCcee
Confidence 222 566677777553 3888998876533
No 116
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=93.33 E-value=5.3 Score=37.39 Aligned_cols=196 Identities=5% Similarity=-0.048 Sum_probs=103.1
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE-ECCEEEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++++..++.||+.... ...+++||+. .++....... ....-++++. -++.+|+.... ...+++|
T Consensus 19 ~i~~d~~g~l~v~~~~------~~~v~~~d~~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~ 83 (299)
T 2z2n_A 19 GITVSDKGKVWITQHK------ANMISCINLD-GKITEYPLPT---PDAKVMCLTISSDGEVWFTENA-----ANKIGRI 83 (299)
T ss_dssp EEEECTTSCEEEEETT------TTEEEEECTT-CCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEEE
T ss_pred ceEECCCCCEEEEecC------CCcEEEEcCC-CCeEEecCCc---ccCceeeEEECCCCCEEEeCCC-----CCeEEEE
Confidence 4444444457775321 2468999988 7776654211 1112223333 25678887532 2358889
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
|+. .+....... .....-+.++.. ++++|+.... ...++++|+ +.+........ ......
T Consensus 84 ~~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~~~~~~~~---~~~~~~ 144 (299)
T 2z2n_A 84 TKK-GIIKEYTLP---NPDSAPYGITEGPNGDIWFTEMN-----------GNRIGRITD-DGKIREYELPN---KGSYPS 144 (299)
T ss_dssp CTT-SCEEEEECS---STTCCEEEEEECTTSCEEEEETT-----------TTEEEEECT-TCCEEEEECSS---TTCCEE
T ss_pred CCC-CcEEEEeCC---CcCCCceeeEECCCCCEEEEecC-----------CceEEEECC-CCCEEEecCCC---CCCCCc
Confidence 886 445443311 011122334443 4678886541 245888998 56655543211 111223
Q ss_pred eEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEE
Q 009435 195 TCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 195 s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
.++.. ++.+|+..-. .+.+++||+ +.+...+.... ....-..++.. ++++|+.... .+.+++
T Consensus 145 ~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~ 208 (299)
T 2z2n_A 145 FITLGSDNALWFTENQ------NNAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEII------GNKIGR 208 (299)
T ss_dssp EEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETT------TTEEEE
T ss_pred eEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccC------CceEEE
Confidence 33333 5678876421 245899999 77777653211 11112233332 4678776532 235899
Q ss_pred EecCCCcEEEE
Q 009435 273 IDVDSGLWTKV 283 (535)
Q Consensus 273 yd~~~~~W~~l 283 (535)
||+ ++.+..+
T Consensus 209 ~~~-~g~~~~~ 218 (299)
T 2z2n_A 209 ITT-SGEITEF 218 (299)
T ss_dssp ECT-TCCEEEE
T ss_pred ECC-CCcEEEE
Confidence 999 7777655
No 117
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.31 E-value=2.3 Score=46.88 Aligned_cols=191 Identities=10% Similarity=0.047 Sum_probs=93.2
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
++++ .++.|+.+ ..+.+||..+++....- .+ . ...-.++.+ ++..++.|+.+ ..+.+||..
T Consensus 65 ~~~~-~l~~~~~d------g~i~vw~~~~~~~~~~~-~~-~---~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~ 127 (814)
T 3mkq_A 65 ARKN-WIIVGSDD------FRIRVFNYNTGEKVVDF-EA-H---PDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWE 127 (814)
T ss_dssp GGGT-EEEEEETT------SEEEEEETTTCCEEEEE-EC-C---SSCEEEEEECSSSSEEEEEETT-----SEEEEEEGG
T ss_pred CCCC-EEEEEeCC------CeEEEEECCCCcEEEEE-ec-C---CCCEEEEEEeCCCCEEEEEcCC-----CEEEEEECC
Confidence 4444 55666542 46889998887765422 11 1 111222222 45555566543 368888987
Q ss_pred CC-eEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCcee
Q 009435 119 SH-TWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (535)
Q Consensus 119 t~-~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s 195 (535)
++ .....- .+ ....-.+++.. ++.+++.|+. ...+.+||+.+..-...... ........
T Consensus 128 ~~~~~~~~~-~~---~~~~v~~~~~~p~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~~---~~~~~v~~ 189 (814)
T 3mkq_A 128 NNWALEQTF-EG---HEHFVMCVAFNPKDPSTFASGCL-----------DRTVKVWSLGQSTPNFTLTT---GQERGVNY 189 (814)
T ss_dssp GTSEEEEEE-EC---CSSCEEEEEEETTEEEEEEEEET-----------TSEEEEEETTCSSCSEEEEC---CCTTCCCE
T ss_pred CCceEEEEE-cC---CCCcEEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcceeEEec---CCCCCEEE
Confidence 76 332211 11 11111223333 3567777773 24577888765432221111 11111122
Q ss_pred EEee---CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEE
Q 009435 196 CSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 196 ~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
++.. ++.+++.|+.++ .+.+||..+.+-...-. .........+..-++.+++.|+.. ..+.+
T Consensus 190 ~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d------g~v~v 254 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASDDL------TIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSED------GTLKI 254 (814)
T ss_dssp EEECCSTTCCEEEEECTTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETT------SCEEE
T ss_pred EEEEECCCCCEEEEEeCCC------EEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCC------CeEEE
Confidence 2222 566777777543 48889988765332211 111111111222245577777753 24888
Q ss_pred EecCCCcEE
Q 009435 273 IDVDSGLWT 281 (535)
Q Consensus 273 yd~~~~~W~ 281 (535)
||+.+..-.
T Consensus 255 wd~~~~~~~ 263 (814)
T 3mkq_A 255 WNSSTYKVE 263 (814)
T ss_dssp EETTTCSEE
T ss_pred EECCCCcEE
Confidence 888776543
No 118
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.29 E-value=11 Score=41.29 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=100.9
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
..++.|+|-. .+-+++||..+.++.... ... ...-.+.+..++.|+|... +.+++||..++
T Consensus 71 d~~g~lWigT--------~~Gl~~yd~~~~~f~~~~--~~~--~~~i~~i~~~~g~lWigt~-------~Gl~~~~~~~~ 131 (758)
T 3ott_A 71 IDNTYLYMGT--------DNGILVYNYRADRYEQPE--TDF--PTDVRTMALQGDTLWLGAL-------NGLYTYQLQSR 131 (758)
T ss_dssp ETTTEEEEEE--------TTEEEEEETTTTEECCCS--CCC--CSCEEEEEEETTEEEEEET-------TEEEEEETTTC
T ss_pred cCCCcEEEEe--------CCCeEEEeCCCCEEECcc--cCC--CceEEEEEecCCcEEEEcC-------CcceeEeCCCC
Confidence 3445677632 135889999998876521 111 1111223334778887532 36899999988
Q ss_pred eEEecccc-CCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC-CCCCceeEE
Q 009435 121 TWISPSVR-GEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP-SARDSHTCS 197 (535)
Q Consensus 121 ~W~~~~~~-g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p-~~r~~~s~~ 197 (535)
++...... ..++.. .-.+++.. ++.|+|... +.+++||+.+.++.......... ......++.
T Consensus 132 ~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 197 (758)
T 3ott_A 132 KLTSFDTRRNGLPNN-TIYSIIRTKDNQIYVGTY-------------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLL 197 (758)
T ss_dssp CEEEECHHHHCCSCS-CEEEEEECTTCCEEEEET-------------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEE
T ss_pred eEEEeccCCCCcCCC-eEEEEEEcCCCCEEEEeC-------------CCHhhCccCCCceEEecCCCccccccceeEEEE
Confidence 88765211 112221 11222222 467887321 35889999988887654211100 111122333
Q ss_pred ee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEe
Q 009435 198 SW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMID 274 (535)
Q Consensus 198 ~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd 274 (535)
.. ++.|+|- - . ..+++||+.+.++..... .+. ..-.+++.- ++.|+|-- . +.+++||
T Consensus 198 ~d~~~~~lWig-t-~------~Gl~~~~~~~~~~~~~~~---l~~-~~i~~i~~d~~g~lWigT-~-------~Gl~~~~ 257 (758)
T 3ott_A 198 EDTTRQCVWIG-T-E------GYLFQYFPSTGQIKQTEA---FHN-NSIKSLALDGNGDLLAGT-D-------NGLYVYH 257 (758)
T ss_dssp EETTTTEEEEE-E-E------EEEEEEETTTTEEEEEEE---EEE-EEEEEEEECTTCCEEEEE-T-------TEEEEEC
T ss_pred EECCCCEEEEE-E-C------CCCeEEcCCCCeEEeccC---CCC-CeEEEEEEcCCCCEEEEe-C-------CceeEEe
Confidence 33 2457762 1 1 248899999988876542 111 111222222 35566532 1 2388899
Q ss_pred cCCCcEEEEe
Q 009435 275 VDSGLWTKVI 284 (535)
Q Consensus 275 ~~~~~W~~l~ 284 (535)
+.+..+..+.
T Consensus 258 ~~~~~~~~~~ 267 (758)
T 3ott_A 258 NDTTPLQHII 267 (758)
T ss_dssp CTTSCCEEEC
T ss_pred cCCCcEEEEE
Confidence 8888776654
No 119
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.15 E-value=8.1 Score=39.06 Aligned_cols=196 Identities=13% Similarity=0.081 Sum_probs=95.7
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE---CCEEEEEcCCCCCCCCCcEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~Iyv~GG~~~~~~~~~~~ 113 (535)
++....++ +++.|+.+ ..+.++|..+.+-...- .+ ... .-.++... ++.+++.|+.+ ..+.
T Consensus 167 ~l~~~~~~-~l~s~s~d------g~i~vwd~~~~~~~~~~-~~-h~~--~v~~l~~~~~~~~~~l~s~s~d-----~~i~ 230 (464)
T 3v7d_B 167 ALKYAHGG-ILVSGSTD------RTVRVWDIKKGCCTHVF-EG-HNS--TVRCLDIVEYKNIKYIVTGSRD-----NTLH 230 (464)
T ss_dssp EEEECSTT-EEEEEETT------SCEEEEETTTTEEEEEE-CC-CSS--CEEEEEEEESSSCEEEEEEETT-----SCEE
T ss_pred EEEEcCCC-EEEEEeCC------CCEEEEECCCCcEEEEE-CC-CCC--ccEEEEEecCCCCCEEEEEcCC-----CcEE
Confidence 33444444 55555543 35788888877644321 11 111 11122222 45777777764 3577
Q ss_pred EEECCCCeEEeccc-c-----------------CCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCC
Q 009435 114 ILDTSSHTWISPSV-R-----------------GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 175 (535)
Q Consensus 114 ~yd~~t~~W~~~~~-~-----------------g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t 175 (535)
+||..+..-..... . ...............++.+++.|+. ...+.+||+.+
T Consensus 231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-----------d~~i~vwd~~~ 299 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY-----------DNTLIVWDVAQ 299 (464)
T ss_dssp EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET-----------TSCEEEEETTT
T ss_pred EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC-----------CCeEEEEECCC
Confidence 78876643211000 0 0000011111222334556666663 24588889877
Q ss_pred ccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEE
Q 009435 176 FVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNL 254 (535)
Q Consensus 176 ~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~i 254 (535)
.+-...-. ..... -.+++.. ++..++.|+.++ .+.+||+.+.+-...-. .....-.++...+..
T Consensus 300 ~~~~~~~~---~~~~~-v~~~~~~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~ 364 (464)
T 3v7d_B 300 MKCLYILS---GHTDR-IYSTIYDHERKRCISASMDT------TIRIWDLENGELMYTLQ-----GHTALVGLLRLSDKF 364 (464)
T ss_dssp TEEEEEEC---CCSSC-EEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEEC-----CCSSCEEEEEECSSE
T ss_pred CcEEEEec---CCCCC-EEEEEEcCCCCEEEEEeCCC------cEEEEECCCCcEEEEEe-----CCCCcEEEEEEcCCE
Confidence 65433221 11111 1222222 556777777553 38899998765332211 111222344455677
Q ss_pred EEEeccCCCCCccCcEEEEecCCCcE
Q 009435 255 FVFGGFTDSQNLYDDLYMIDVDSGLW 280 (535)
Q Consensus 255 yv~GG~~~~~~~~~dv~~yd~~~~~W 280 (535)
++.|+.+. .+.+||+.+..-
T Consensus 365 l~s~s~dg------~v~vwd~~~~~~ 384 (464)
T 3v7d_B 365 LVSAAADG------SIRGWDANDYSR 384 (464)
T ss_dssp EEEEETTS------EEEEEETTTCCE
T ss_pred EEEEeCCC------cEEEEECCCCce
Confidence 77777532 489999987653
No 120
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.14 E-value=7 Score=38.25 Aligned_cols=226 Identities=10% Similarity=0.100 Sum_probs=112.7
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEE
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
..++...+.+.+|++|-. ..+++-.-.-.+|+.+......+ .....++...++.+|+.|-. ..+++
T Consensus 38 ~~~v~~~~~~~~~~~G~~-------g~i~~s~DgG~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~------g~i~~ 103 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVGVN-------ATLMETRDGGQTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP------PIMLH 103 (327)
T ss_dssp EEEEEESSSSCEEEEETT-------TEEEEESSTTSSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET------TEEEE
T ss_pred EEEEEECCCCcEEEEcCC-------CeEEEeCCCCCCCeECCCCCCCC-CccEEEEEecCCeEEEEECC------CeEEE
Confidence 344455555567886531 23554444456899865221111 12233444456788887631 23444
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEE-EECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
-+-.-.+|+.+......|. ....++ .-++.+|+.|.. ..+++-+-.-.+|+.+.. +.+...
T Consensus 104 S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~------------g~v~~S~DgG~tW~~~~~----~~~~~~ 165 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNV------------GAIYRTKDSGKNWQALVQ----EAIGVM 165 (327)
T ss_dssp ESSTTSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETT------------CCEEEESSTTSSEEEEEC----SCCCCE
T ss_pred ECCCCCCceECccccCCCC--CeEEEEEECCCCEEEEeCC------------ccEEEEcCCCCCCEEeec----CCCcce
Confidence 3223468988763212222 123333 345788887751 135554445678999863 222233
Q ss_pred eeEEee-CCEEEEEecCCCCCcccCceEEEECC-CCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCcE
Q 009435 194 HTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDL 270 (535)
Q Consensus 194 ~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv 270 (535)
+.++.. ++.+|++|- . ..+++-+-. ...|+.+.. +.+...+.++. -++.+|+++.. ..+
T Consensus 166 ~~~~~~~~~~~~~~g~-~------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~-------G~~ 227 (327)
T 2xbg_A 166 RNLNRSPSGEYVAVSS-R------GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNG-------GKI 227 (327)
T ss_dssp EEEEECTTSCEEEEET-T------SSEEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETT-------TEE
T ss_pred EEEEEcCCCcEEEEEC-C------CcEEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeCC-------ceE
Confidence 444443 556666652 2 124544333 678999864 33344444443 34678877642 124
Q ss_pred EEEecC-CCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcc
Q 009435 271 YMIDVD-SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 314 (535)
Q Consensus 271 ~~yd~~-~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG 314 (535)
++.+.. ..+|+.+... ..+.. .....+.. ..++.+|+.|+
T Consensus 228 ~~s~~D~G~tW~~~~~~-~~~~~-~~~~~v~~--~~~~~~~~~g~ 268 (327)
T 2xbg_A 228 AFSDPDNSENWGELLSP-LRRNS-VGFLDLAY--RTPNEVWLAGG 268 (327)
T ss_dssp EEEETTEEEEECCCBCT-TSSCC-SCEEEEEE--SSSSCEEEEES
T ss_pred EEecCCCCCeeEeccCC-cccCC-cceEEEEe--cCCCEEEEEeC
Confidence 554322 5579876432 01111 11222222 23567888775
No 121
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.06 E-value=8.4 Score=38.97 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=88.2
Q ss_pred EEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEe
Q 009435 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (535)
Q Consensus 46 Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 124 (535)
+++.|+.+ ..+.+||..+.+-...- .+ .. ..-.+++.. ++..++.|+.+ ..+.+||..+.+-..
T Consensus 282 ~l~~~~~d------~~i~vwd~~~~~~~~~~-~~--~~-~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 282 IVVSGSYD------NTLIVWDVAQMKCLYIL-SG--HT-DRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMY 346 (464)
T ss_dssp EEEEEETT------SCEEEEETTTTEEEEEE-CC--CS-SCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred EEEEEeCC------CeEEEEECCCCcEEEEe-cC--CC-CCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEE
Confidence 55666643 35889999877644321 11 11 111222222 45566777654 358999998876432
Q ss_pred ccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEE
Q 009435 125 PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKII 204 (535)
Q Consensus 125 ~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~ly 204 (535)
.- .............+..++.|+. ...+.+||+.+..-..... ........+...++.++
T Consensus 347 ~~-----~~h~~~v~~~~~~~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l 406 (464)
T 3v7d_B 347 TL-----QGHTALVGLLRLSDKFLVSAAA-----------DGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNIL 406 (464)
T ss_dssp EE-----CCCSSCEEEEEECSSEEEEEET-----------TSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEE
T ss_pred EE-----eCCCCcEEEEEEcCCEEEEEeC-----------CCcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEE
Confidence 11 1112223344455667777763 2457888887755332221 11112233444567777
Q ss_pred EEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEecc
Q 009435 205 VIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF 260 (535)
Q Consensus 205 v~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~ 260 (535)
+.|+ + +.+.+||+++.+-..... ......-.++...++.+++.++.
T Consensus 407 ~~~~-d------g~i~iwd~~~g~~~~~~~---~~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 407 VSGS-E------NQFNIYNLRSGKLVHANI---LKDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EEEE-T------TEEEEEETTTCCEEESCT---TTTCSEEEEEEEETTEEEEEEEE
T ss_pred EEec-C------CeEEEEECCCCcEEehhh---ccCCCcEEEEEecCCEEEEEEEe
Confidence 7776 2 248999999887554322 11222222333445666655554
No 122
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=93.05 E-value=5.7 Score=39.24 Aligned_cols=233 Identities=11% Similarity=0.015 Sum_probs=107.5
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCC----C-eEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCC
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVN----Q-TWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPL 109 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t----~-~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~ 109 (535)
++....++.+++.|+.+ ..+.+||..+ . .-..+. ... ..-.+++.. ++++++.|+.+
T Consensus 72 ~~~~s~~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~---~h~--~~v~~~~~~~~~~~~l~s~~~d----- 135 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDN------GSLELYSTNEANNAINSMARFS---NHS--SSVKTVKFNAKQDNVLASGGNN----- 135 (416)
T ss_dssp EEEECSSSSCEEEEESS------SCEEEECCSSTTSCCCEEEECC---CSS--SCCCEEEECSSSTTBEEEECSS-----
T ss_pred EEEECCCCCeEEEEccC------CeEEEeecccccccccchhhcc---CCc--cceEEEEEcCCCCCEEEEEcCC-----
Confidence 44444344455666643 3578888876 1 222221 111 111222222 25677777754
Q ss_pred CcEEEEECCCCe------EEeccccCCCCCCCCCeEEEEEC--CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEe
Q 009435 110 RDLHILDTSSHT------WISPSVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 181 (535)
Q Consensus 110 ~~~~~yd~~t~~------W~~~~~~g~~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~ 181 (535)
..+.+||+.+.. -.. ...........-.+++... +.+++.|+. ...+.++|+.+.+....
T Consensus 136 g~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~ 203 (416)
T 2pm9_A 136 GEIFIWDMNKCTESPSNYTPL-TPGQSMSSVDEVISLAWNQSLAHVFASAGS-----------SNFASIWDLKAKKEVIH 203 (416)
T ss_dssp SCEEBCBTTTTSSCTTTCCCB-CCCCSCCSSCCCCEEEECSSCTTEEEEESS-----------SSCEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCcccccccccc-ccccccCCCCCeeEEEeCCCCCcEEEEEcC-----------CCCEEEEECCCCCcceE
Confidence 357888887654 110 1000011111122333332 467777773 24588899887654433
Q ss_pred ccCCCCCC--CCCceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCC--CCceeeEEEEE--CCE
Q 009435 182 TTSGNPPS--ARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL--SPRAGHSTVAF--GKN 253 (535)
Q Consensus 182 ~~~~~~p~--~r~~~s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p--~~R~~hs~v~~--~~~ 253 (535)
-....... .....+++.. + ..+++.|+.++. ...+.+||+.+..-. +.. .. ....-.++... ++.
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~~-~~~---~~~~~~~~v~~~~~s~~~~~ 276 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANTP-LQT---LNQGHQKGILSLDWCHQDEH 276 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTSC-SBC---CCSCCSSCEEEEEECSSCSS
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCCC-cEE---eecCccCceeEEEeCCCCCC
Confidence 21100000 1112223333 2 357777775531 125788898764311 111 11 11111222322 567
Q ss_pred EEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCC-EEEEEcccCC
Q 009435 254 LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGG-VLVFIGGCNK 317 (535)
Q Consensus 254 iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~-~l~v~GG~~~ 317 (535)
+++.|+.+ ..+.+||+.+.+-...-.....+ .....+ ..++ .+++.|+.+.
T Consensus 277 ~l~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~--s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 277 LLLSSGRD------NTVLLWNPESAEQLSQFPARGNW-----CFKTKF--APEAPDLFACASFDN 328 (416)
T ss_dssp CEEEEESS------SEEEEECSSSCCEEEEEECSSSC-----CCCEEE--CTTCTTEEEECCSSS
T ss_pred eEEEEeCC------CCEEEeeCCCCccceeecCCCCc-----eEEEEE--CCCCCCEEEEEecCC
Confidence 77777753 34899999876543322211111 111222 2344 6778887654
No 123
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=92.95 E-value=2.4 Score=44.19 Aligned_cols=183 Identities=19% Similarity=0.261 Sum_probs=97.5
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe-
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT- 121 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~- 121 (535)
++.+|+|-| +..|+||..+++...-.-. .+| . --++....+++|+|-| +..|+||..+.+
T Consensus 158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~~w~-gi~--~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v 218 (460)
T 1qhu_A 158 DEGILFFQG--------NRKWFWDLTTGTKKERSWP-AVG--N-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEV 218 (460)
T ss_dssp SSEEEEEET--------TEEEEEETTTTEEEEECCT-TSC--C-CSEEEEETTEEEEEET-------TEEEEECTTTCCC
T ss_pred CCeEEEEec--------ccEEEEecccceeecccCC-CCC--c-cchheeeCCceEEEEC-------CEEEEEcCccCcc
Confidence 457899887 5689999988766542211 222 2 3455556899999988 578888876543
Q ss_pred -----------EEeccccCC------------CC---CCC-CCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 122 -----------WISPSVRGE------------GP---EAR-EGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 122 -----------W~~~~~~g~------------~p---~~r-~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
|..++..|. .| .+. ..-+++. .++++|+|-| +..|++|.
T Consensus 219 ~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------------~~yWR~~~ 285 (460)
T 1qhu_A 219 PPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------------SHYWRLDT 285 (460)
T ss_dssp CTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------------TEEEECTT
T ss_pred cCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------------CEEEEEec
Confidence 222211110 00 111 1223333 4688999987 33566665
Q ss_pred CCccEEE--ecc-CCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeec--------CCCCCCC-
Q 009435 174 ETFVWKR--ATT-SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT--------SGMVLSP- 241 (535)
Q Consensus 174 ~t~~W~~--~~~-~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~--------~g~~p~~- 241 (535)
....+.. +.. -..+|.. --++...++++|+|=| +..|+|+..+. .+.+.. .| .|..
T Consensus 286 ~~~~~~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG--------~~yw~f~~~~g-~~~~~GyPK~I~~~lG-lp~~~ 353 (460)
T 1qhu_A 286 NRDGWHSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD--------TKVYVFLTKGG-YTLVNGYPKRLEKELG-SPPVI 353 (460)
T ss_dssp GGGCCCCEEGGGTCTTSCSS--CSEEEEETTEEEEEET--------TEEEEEECSBS-CEECTTCCEEHHHHHC-CCSSC
T ss_pred CCCCcCccchhhhccCCCCC--CcEEEEECCeEEEEeC--------CEEEEEeCCCC-ceecCCCCeEHHHhcc-CCCcc
Confidence 4322211 111 1122332 2334445789999966 34778876431 122111 12 1211
Q ss_pred ---ceeeEEEE-ECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 242 ---RAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 242 ---R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
+..++... ..+++|+|-|. ..|+||...
T Consensus 354 ~~~~IDAA~~~~~~~ktyfFkG~--------~ywryd~~~ 385 (460)
T 1qhu_A 354 SLEAVDAAFVCPGSSRLHIMAGR--------RLWWLDLKS 385 (460)
T ss_dssp CCSCCCEEECCTTCCEEEEEETT--------EEEEEEGGG
T ss_pred ccCcccEEEEeCCCCEEEEEECC--------EEEEEECCC
Confidence 22222222 35789999873 489999874
No 124
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.91 E-value=6.2 Score=38.65 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=74.6
Q ss_pred ceEEEEcC-CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeec-------cCCC-CCCCCceEEEEE---CCEEEEEcC
Q 009435 35 HTCNAIKG-GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVI-------KGSP-PTPRDSHSCTTV---GENLYVFGG 102 (535)
Q Consensus 35 h~~~~v~~-~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~-------~g~~-P~~R~~hs~~~~---~~~Iyv~GG 102 (535)
-.++.+.. ++.+++.|+.+ ..+.+||..+........ .... ......-.++.+ ++.+++.|+
T Consensus 46 v~~~~~s~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSD------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp EEEEEECTTTCCEEEEEETT------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred EEEEEEecCCCCEEEEEcCC------CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 34455543 34466667643 357888887654321110 0000 011122222232 445777776
Q ss_pred CCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE----CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE
Q 009435 103 TDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV----GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW 178 (535)
Q Consensus 103 ~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~----~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W 178 (535)
.+ ..+.+||+.+.+-..... .+.+ ....... ++.+++.|+. ...+.+||+.+..-
T Consensus 120 ~d-----~~i~iwd~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 120 FD-----KTLKVWDTNTLQTADVFN---FEET--VYSHHMSPVSTKHCLVAVGTR-----------GPKVQLCDLKSGSC 178 (408)
T ss_dssp TT-----SEEEEEETTTTEEEEEEE---CSSC--EEEEEECSSCSSCCEEEEEES-----------SSSEEEEESSSSCC
T ss_pred CC-----CeEEEeeCCCCccceecc---CCCc--eeeeEeecCCCCCcEEEEEcC-----------CCeEEEEeCCCcce
Confidence 54 468899998876543321 1111 1122222 2346666663 24578888876542
Q ss_pred EEeccCCCCCCCCCceeEEee-CC-EEEEEecCCCCCcccCceEEEECCCC
Q 009435 179 KRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTL 227 (535)
Q Consensus 179 ~~~~~~~~~p~~r~~~s~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~t~ 227 (535)
...-. . ....-.+++.. ++ .+++.|+.++ .+.+||+.+.
T Consensus 179 ~~~~~--~--~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~ 219 (408)
T 4a11_B 179 SHILQ--G--HRQEILAVSWSPRYDYILATASADS------RVKLWDVRRA 219 (408)
T ss_dssp CEEEC--C--CCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCS
T ss_pred eeeec--C--CCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCC
Confidence 22210 0 01111222222 33 3777877654 3788888654
No 125
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=92.89 E-value=0.76 Score=44.61 Aligned_cols=193 Identities=10% Similarity=0.116 Sum_probs=93.5
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEEC----CEEEEEcCCCCCCCCCcEEEEE
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVG----ENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~----~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
+++..+++.|+.+.. ...+.+||..+.+.......+. ...-.+++... +.+++.|+.+ ..+.+||
T Consensus 28 p~~~~l~~~~s~~~~---d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd 96 (357)
T 3i2n_A 28 PCSAKFVTMGNFARG---TGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGDFG-----GNLHIWN 96 (357)
T ss_dssp TTSSEEEEEEC--CC---CEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEETT-----SCEEEEC
T ss_pred CCCceEEEecCccCC---CcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEecCC-----CeEEEEe
Confidence 445577777765221 2468899988877654321111 11112222222 3677777654 3588888
Q ss_pred CCCCe--EEeccccCCCCCCCCCeEEEE-------ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc--EEEeccCC
Q 009435 117 TSSHT--WISPSVRGEGPEAREGHSAAL-------VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSG 185 (535)
Q Consensus 117 ~~t~~--W~~~~~~g~~p~~r~~hs~~~-------~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~--W~~~~~~~ 185 (535)
..+.. -..+. . ....-.++.. .++.+++.|+.+ ..+.+||+.+.. ...+....
T Consensus 97 ~~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~s~~~~~l~~~~~d-----------~~i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 97 LEAPEMPVYSVK---G--HKEIINAIDGIGGLGIGEGAPEIVTGSRD-----------GTVKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp TTSCSSCSEEEC---C--CSSCEEEEEEESGGGCC-CCCEEEEEETT-----------SCEEEECTTSCSSCSEEECCCT
T ss_pred CCCCCccEEEEE---e--cccceEEEeeccccccCCCccEEEEEeCC-----------CeEEEEeCCCCCCcceeccccC
Confidence 77654 11111 0 0001111111 235566666632 357788887653 33332110
Q ss_pred CCCCCCCceeEE-----eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE----CCEEEE
Q 009435 186 NPPSARDSHTCS-----SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF----GKNLFV 256 (535)
Q Consensus 186 ~~p~~r~~~s~~-----~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~----~~~iyv 256 (535)
....+...+++ ..++.+++.|+.+ ..+.+||+.+.+-..... . ...-.++... ++..++
T Consensus 161 -~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 161 -GENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRWETN---I--KNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp -TSCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEEEEE---C--SSCEEEEEESCSSSSCCEEE
T ss_pred -CCCCCceEEEEEEeccCCCCCEEEEEccC------CeEEEEECccCceeeecC---C--CCceEEEEcCCCCCCCCEEE
Confidence 01111222222 1356777777654 358899998876543322 1 1112233333 456677
Q ss_pred EeccCCCCCccCcEEEEecCCC
Q 009435 257 FGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 257 ~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
.|+.. ..+.+||+.+.
T Consensus 229 ~~~~d------g~i~i~d~~~~ 244 (357)
T 3i2n_A 229 ATSLE------GKFHVFDMRTQ 244 (357)
T ss_dssp EEEST------TEEEEEEEEEE
T ss_pred EECCC------CeEEEEeCcCC
Confidence 77643 24788887653
No 126
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=92.88 E-value=4.5 Score=39.80 Aligned_cols=194 Identities=8% Similarity=0.011 Sum_probs=99.1
Q ss_pred EEEEcCCC-EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCc-eEEEEE--CCEEEEEcCCCCCCCCCcE
Q 009435 37 CNAIKGGR-FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDS-HSCTTV--GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 37 ~~~v~~~~-~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~-hs~~~~--~~~Iyv~GG~~~~~~~~~~ 112 (535)
++....++ .+++.|+.+ ..+.+||..+.+..... ........ .+++.. ++.+++.|+.+ ..+
T Consensus 78 ~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i 143 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGSKG------GDIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSIR-----GAT 143 (383)
T ss_dssp EEEECSSCTTEEEEEEBT------SCEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEETT-----TEE
T ss_pred EEEECCCCCCEEEEEcCC------CeEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEE
Confidence 34443333 466777653 35889999887766533 11111122 223333 34677777654 468
Q ss_pred EEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 113 ~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
.++|+.+......... ......-.+++.. ++.+++.|+. ...+.++|+.......+... ..
T Consensus 144 ~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~h-----~~ 205 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDS-----------TGRLLLLGLDGHEIFKEKLH-----KA 205 (383)
T ss_dssp EEEETTSCEEEEEECC--CCSSCCEEEEEEETTTTEEEEEET-----------TSEEEEEETTSCEEEEEECS-----SS
T ss_pred EEEECCCCceEEEecc--CCCCCCeEEEEECCCCCEEEEECC-----------CCCEEEEECCCCEEEEeccC-----CC
Confidence 8899988766554421 1111111222222 4566677763 24678888865544444311 11
Q ss_pred CceeEEee-CCE-EEEEecCCCCCcccCceEEEECCC----CcEEEeecCCCCCCCceeeEEEEE--CCEEEEEeccCCC
Q 009435 192 DSHTCSSW-KNK-IIVIGGEDGHDYYLSDVHILDTDT----LTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDS 263 (535)
Q Consensus 192 ~~~s~~~~-~~~-lyv~GG~~~~~~~~~~i~~yd~~t----~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~~~ 263 (535)
.-.+++.. ++. +++.|+.++ .+.+||+.+ ........ ....-.++... ++.+++.|+..
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d-- 272 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDA------TVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQR-- 272 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTS------EEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESS--
T ss_pred cEEEEEECCCCCCEEEEEeCCC------EEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCC--
Confidence 11222222 344 777777543 488888876 33322211 11111222222 45677777653
Q ss_pred CCccCcEEEEecCCCc
Q 009435 264 QNLYDDLYMIDVDSGL 279 (535)
Q Consensus 264 ~~~~~dv~~yd~~~~~ 279 (535)
..+.+||+.+..
T Consensus 273 ----~~i~iwd~~~~~ 284 (383)
T 3ei3_B 273 ----NEIRVYSSYDWS 284 (383)
T ss_dssp ----SEEEEEETTBTT
T ss_pred ----CcEEEEECCCCc
Confidence 348899987653
No 127
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=92.80 E-value=8.3 Score=38.22 Aligned_cols=219 Identities=10% Similarity=0.027 Sum_probs=104.6
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
++.+++.|+.+ ..+.+||..+.+-...- ......-.++.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTE------GDIKVLDSNFNLQREID-----QAHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETT------SCEEEECTTSCEEEEET-----TSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTC
T ss_pred CCCEEEEEECC------CCEEEEeCCCcceeeec-----ccccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCC
Confidence 33456666643 35888888776554421 111112222222 45667777654 36889998765
Q ss_pred eEE-eccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEE-
Q 009435 121 TWI-SPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS- 197 (535)
Q Consensus 121 ~W~-~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~- 197 (535)
+-. .+. .....-.+++.. ++.+++.|+.+ ..+.++|+.+.+-...-.....+.. ...+++
T Consensus 172 ~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~ 234 (420)
T 3vl1_A 172 SNPRTLI-----GHRATVTDIAIIDRGRNVLSASLD-----------GTIRLWECGTGTTIHTFNRKENPHD-GVNSIAL 234 (420)
T ss_dssp CCCEEEE-----CCSSCEEEEEEETTTTEEEEEETT-----------SCEEEEETTTTEEEEEECBTTBTTC-CEEEEEE
T ss_pred cCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCC-----------CcEEEeECCCCceeEEeecCCCCCC-CccEEEE
Confidence 421 111 011111223333 45666666632 3477788876643322111000000 000111
Q ss_pred ---------------------eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCE-E
Q 009435 198 ---------------------SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-L 254 (535)
Q Consensus 198 ---------------------~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~-i 254 (535)
..++.+++.|+.++ .+.+||+.+.+-..... ......-.+++.. ++. +
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~ 305 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG------VITVHNVFSKEQTIQLP---SKFTCSCNSLTVDGNNANY 305 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS------CEEEEETTTCCEEEEEC---CTTSSCEEEEEECSSCTTE
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCC------eEEEEECCCCceeEEcc---cccCCCceeEEEeCCCCCE
Confidence 12567777877543 38899998765333222 1111112222322 334 7
Q ss_pred EEEeccCCCCCccCcEEEEecCCCc--EEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 255 FVFGGFTDSQNLYDDLYMIDVDSGL--WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 255 yv~GG~~~~~~~~~dv~~yd~~~~~--W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
++.|+.. ..+.+||+.+.. ...+...... ...... ..++.+++.|+.+.
T Consensus 306 l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~~-----~v~~~~---~~~~~~l~s~~~d~ 356 (420)
T 3vl1_A 306 IYAGYEN------GMLAQWDLRSPECPVGEFLINEGT-----PINNVY---FAAGALFVSSGFDT 356 (420)
T ss_dssp EEEEETT------SEEEEEETTCTTSCSEEEEESTTS-----CEEEEE---EETTEEEEEETTTE
T ss_pred EEEEeCC------CeEEEEEcCCCcCchhhhhccCCC-----CceEEE---eCCCCEEEEecCCc
Confidence 7777753 348999998753 2333321111 111112 23567777777654
No 128
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=92.80 E-value=5.9 Score=37.87 Aligned_cols=186 Identities=9% Similarity=0.061 Sum_probs=87.7
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCe----EEEeeccCCCCCCCCceEEEE-ECCE-EEEEcCCCCCCCCCcEEE
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT----WSQPVIKGSPPTPRDSHSCTT-VGEN-LYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~----W~~l~~~g~~P~~R~~hs~~~-~~~~-Iyv~GG~~~~~~~~~~~~ 114 (535)
++++ +++.|+.+ ..+.+||..+.. ...+. . ....-.+++. -+++ +++.|+.+ ..+.+
T Consensus 21 ~~~~-~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~ 83 (342)
T 1yfq_A 21 PSKS-LLLITSWD------GSLTVYKFDIQAKNVDLLQSL---R--YKHPLLCCNFIDNTDLQIYVGTVQ-----GEILK 83 (342)
T ss_dssp GGGT-EEEEEETT------SEEEEEEEETTTTEEEEEEEE---E--CSSCEEEEEEEESSSEEEEEEETT-----SCEEE
T ss_pred CCCC-EEEEEcCC------CeEEEEEeCCCCccccceeee---e--cCCceEEEEECCCCCcEEEEEcCC-----CeEEE
Confidence 4444 45556533 457777776655 33221 1 1111222222 2566 67777654 36899
Q ss_pred EEC-CCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc-------EEEeccCCC
Q 009435 115 LDT-SSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-------WKRATTSGN 186 (535)
Q Consensus 115 yd~-~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~-------W~~~~~~~~ 186 (535)
||+ .+.....+.. .+....-.+++...+.+++.|+. ...+.++|+.+.. .+.+. .
T Consensus 84 wd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~---~ 146 (342)
T 1yfq_A 84 VDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASW-----------DGLIEVIDPRNYGDGVIAVKNLNSN---N 146 (342)
T ss_dssp ECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEET-----------TSEEEEECHHHHTTBCEEEEESCSS---S
T ss_pred EEeccCCceEeccc---cCCCCceEEEEeCCCCEEEEEcC-----------CCeEEEEcccccccccccccCCeee---E
Confidence 998 8776644431 00111122333333556666663 2356777765410 11111 1
Q ss_pred CCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCC-Cc--EEEeecCCCCCCCceeeEEEEE--CCEEEEEeccC
Q 009435 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LT--WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFT 261 (535)
Q Consensus 187 ~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~--W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~ 261 (535)
......-.++....+. ++.|+.+ ..+.+||+.+ .. ...... +....-.++... ++.+++.|+..
T Consensus 147 ~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 147 TKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES----GLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC----SCSSCEEEEEECSGGGCEEEEEETT
T ss_pred EeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec----CCCCceeEEEECCCCCCEEEEEecC
Confidence 1112222334444555 5566543 3588999887 33 322221 111112233333 45677777753
Q ss_pred CCCCccCcEEEEecCC
Q 009435 262 DSQNLYDDLYMIDVDS 277 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~ 277 (535)
. .+.+||...
T Consensus 216 g------~i~i~~~~~ 225 (342)
T 1yfq_A 216 G------RVAVEFFDD 225 (342)
T ss_dssp S------EEEEEECCT
T ss_pred C------cEEEEEEcC
Confidence 2 355655543
No 129
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.71 E-value=8.7 Score=38.23 Aligned_cols=182 Identities=14% Similarity=0.080 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (535)
..+.+||..+++....... .. ...-.++.+ ++++++.|+.+ ..+.+||+.+.+....- ......
T Consensus 113 ~~v~lw~~~~~~~~~~~~~---~~-~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~-----~~~~~~ 178 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAET---DE-STYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQTKLRTM-----AGHQAR 178 (401)
T ss_dssp TEEEEEETTTCCEEEEEEC---CT-TCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEE-----CCCSSC
T ss_pred CeEEEeeCCCCcEeEeeec---CC-CCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCeEEEEe-----cCCCCc
Confidence 4699999998877654321 11 112222333 55677777654 36889998877643321 111122
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCccc
Q 009435 138 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYL 216 (535)
Q Consensus 138 hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~ 216 (535)
...+..++.+++.|+. ...+.++|+....-......+ ....-.++... ++.+++.|+.++
T Consensus 179 v~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~----- 239 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSR-----------SGAIHHHDVRIANHQIGTLQG---HSSEVCGLAWRSDGLQLASGGNDN----- 239 (401)
T ss_dssp EEEEEEETTEEEEEET-----------TSEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred eEEEEECCCEEEEEcC-----------CCCEEEEecccCcceeeEEcC---CCCCeeEEEEcCCCCEEEEEeCCC-----
Confidence 2333345667777773 245778888743211111110 01111222222 567778887653
Q ss_pred CceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 217 ~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
.+.+||+.+.+-...-. .....-.++... +..+++.||... -..+.+||+.+..-...
T Consensus 240 -~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 240 -VVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAATGARVNT 299 (401)
T ss_dssp -CEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT----TCEEEEEETTTCCEEEE
T ss_pred -eEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC----CCEEEEEECCCCCEEEE
Confidence 48899998765433221 111111223332 456777775221 23499999988765443
No 130
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.71 E-value=14 Score=40.59 Aligned_cols=186 Identities=9% Similarity=0.016 Sum_probs=95.4
Q ss_pred eEEEEEcCCCeEEEeeccCCCCC-C-CCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCC------CeEE---ecccc
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPT-P-RDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSS------HTWI---SPSVR 128 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~-~-R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t------~~W~---~~~~~ 128 (535)
-+++||+.++++........... + ..-++.+.. ++.|+|-. .. .-+++||..+ ..+. .....
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT-~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST-CL-----GGIFVVDKHKLMQSTSGQYIAEQNYSVH 466 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE-SS-----SCEEEEEHHHHHHCCSSEEECSEEECGG
T ss_pred cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE-CC-----CceEEEccccccccCCcceecccccccc
Confidence 48999999999887642111111 1 111222222 46787742 11 2478888653 2232 11111
Q ss_pred CCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEE
Q 009435 129 GEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVI 206 (535)
Q Consensus 129 g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~ 206 (535)
..++.. .-.+++.. ++.|+|+||. .+.+++||+.+.+++..... .........++... ++.|++-
T Consensus 467 ~~l~~~-~i~~i~~d~~g~lWi~~~t-----------~~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lWig 533 (758)
T 3ott_A 467 NGLSGM-FINQIIPDNEGNVWVLLYN-----------NKGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLWVG 533 (758)
T ss_dssp GTCSCS-CEEEEEECTTSCEEEEETT-----------CSSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEEEE
T ss_pred cccccc-eeeeEEEcCCCCEEEEccC-----------CCCcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEEEE
Confidence 112211 11222222 3679987662 24589999999998887422 11111111222222 5678863
Q ss_pred ecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 207 GGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 207 GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
.. +.+.+||+++.+++.....+ +|. ..-.+++.-++.|++-.. +.+.+||+++.+....
T Consensus 534 -t~-------~Gl~~~~~~~~~~~~~~~~g-l~~-~~i~~i~~~~g~lWi~t~--------~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 534 -FH-------GGVMRINPKDESQQSISFGS-FSN-NEILSMTCVKNSIWVSTT--------NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp -ET-------TEEEEECC--CCCCBCCCCC-----CCEEEEEEETTEEEEEES--------SCEEEEETTTCCEEEC
T ss_pred -ec-------CceEEEecCCCceEEecccC-CCc-cceEEEEECCCCEEEECC--------CCeEEEcCCCceeEEe
Confidence 21 23899999988876654222 332 223344445778887542 2389999999876654
No 131
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=92.70 E-value=8.6 Score=40.23 Aligned_cols=104 Identities=8% Similarity=0.056 Sum_probs=53.2
Q ss_pred eeEEEEECCCccEEEeccCCCCCCCC-CceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCc
Q 009435 166 NDLYILNTETFVWKRATTSGNPPSAR-DSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 242 (535)
Q Consensus 166 n~v~~yd~~t~~W~~~~~~~~~p~~r-~~~s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R 242 (535)
..+.++|..+.+-...-. ...... .-.+++.. + +.+++.|+.++ .+.+||+.+.+....-.........
T Consensus 183 ~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTCCEEEECCBTTBCCCS
T ss_pred CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCEeEEecccccccCC
Confidence 457788877665433221 011000 12223322 5 67778777643 4889999887654432100001111
Q ss_pred eeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 243 AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 243 ~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
.-.++...++.+++.|+.. ..+.+||+.+......
T Consensus 255 ~v~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 255 GIFALSWLDSQKFATVGAD------ATIRVWDVTTSKCVQK 289 (615)
T ss_dssp CEEEEEESSSSEEEEEETT------SEEEEEETTTTEEEEE
T ss_pred ceEEEEEcCCCEEEEEcCC------CcEEEEECCCCcEEEE
Confidence 1122222266777777753 3489999987765443
No 132
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=92.63 E-value=11 Score=40.84 Aligned_cols=194 Identities=11% Similarity=0.111 Sum_probs=93.1
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
+.+..++.+++.|+.+ ..+.++|..+..-...- .+. ...-.++.+ +++.++.|+.+ ..+.++
T Consensus 436 v~~s~~g~~l~sgs~D------g~v~vwd~~~~~~~~~~-~~h----~~~v~~~~~s~~~~~l~s~s~D-----~~i~iw 499 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWD------GELRLWDLAAGVSTRRF-VGH----TKDVLSVAFSLDNRQIVSASRD-----RTIKLW 499 (694)
T ss_dssp EEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE-ECC----SSCEEEEEECTTSSCEEEEETT-----SCEEEE
T ss_pred EEECCCCCEEEEEeCC------CcEEEEECCCCcceeEE-eCC----CCCEEEEEEeCCCCEEEEEeCC-----CEEEEE
Confidence 3343333456666643 46888998877543311 111 111122222 45566677654 346777
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE-CC---EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV-GK---RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~---~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
|.....-..+.. .....+....++.. .+ .+++.|+.+ ..+.++|+.+.+-...-. ....
T Consensus 500 d~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----------~~v~vwd~~~~~~~~~~~---~h~~- 562 (694)
T 3dm0_A 500 NTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWD-----------KTVKVWNLSNCKLRSTLA---GHTG- 562 (694)
T ss_dssp CTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETT-----------SCEEEEETTTCCEEEEEC---CCSS-
T ss_pred ECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCC-----------CeEEEEECCCCcEEEEEc---CCCC-
Confidence 765443222211 11111111222222 21 356666632 357788887765433211 0111
Q ss_pred CceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcE
Q 009435 192 DSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDL 270 (535)
Q Consensus 192 ~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv 270 (535)
.-.+++. .++++++.|+.++ .+.+||+.+.+-. .. ......-++++...+..+++++.. +.|
T Consensus 563 ~v~~v~~spdg~~l~sg~~Dg------~i~iwd~~~~~~~--~~---~~~~~~v~~~~~sp~~~~l~~~~~------~~i 625 (694)
T 3dm0_A 563 YVSTVAVSPDGSLCASGGKDG------VVLLWDLAEGKKL--YS---LEANSVIHALCFSPNRYWLCAATE------HGI 625 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTS------BCEEEETTTTEEE--EC---CBCSSCEEEEEECSSSSEEEEEET------TEE
T ss_pred CEEEEEEeCCCCEEEEEeCCC------eEEEEECCCCceE--EE---ecCCCcEEEEEEcCCCcEEEEEcC------CCE
Confidence 1112222 2677888888654 3788998877532 22 111222334444444444455432 238
Q ss_pred EEEecCCCcEE
Q 009435 271 YMIDVDSGLWT 281 (535)
Q Consensus 271 ~~yd~~~~~W~ 281 (535)
.+||+.+..-.
T Consensus 626 ~iwd~~~~~~~ 636 (694)
T 3dm0_A 626 KIWDLESKSIV 636 (694)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCCCh
Confidence 89999887543
No 133
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.63 E-value=2.8 Score=41.45 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=91.3
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE---CCEEEEEcCCCCCCCCCcEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
+.+..++..++.|+.+ ..+.+||..+.+-...- .+ ....-.++.+ ++.+++.||.++ .+.+
T Consensus 145 v~~spdg~~l~sgs~d------g~v~iwd~~~~~~~~~~-~~----h~~~v~~v~~s~~~~~~~~s~~~dg-----~v~~ 208 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKD------FSVKVWDLSQKAVLKSY-NA----HSSEVNCVAACPGKDTIFLSCGEDG-----RILL 208 (357)
T ss_dssp EEECSSSSEEEEEETT------SCEEEEETTTTEEEEEE-CC----CSSCEEEEEECTTCSSCEEEEETTS-----CEEE
T ss_pred EEECCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-cC----CCCCEEEEEEccCCCceeeeeccCC-----ceEE
Confidence 3343333455666643 35788898887654421 11 1111222222 234777777543 4778
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEEE---CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
||+.+.+-.... ...........+.. ++.+++.|+. ...+.+||+.+.+-...- .... .
T Consensus 209 wd~~~~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~-----------d~~i~~wd~~~~~~~~~~---~~~~-~ 270 (357)
T 4g56_B 209 WDTRKPKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDE-----------TGNVSLVNIKNPDSAQTS---AVHS-Q 270 (357)
T ss_dssp CCTTSSSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEES-----------SSCEEEEESSCGGGCEEE---CCCS-S
T ss_pred EECCCCceeeee---eeccccccccchhhhhcccceEEEeec-----------ccceeEEECCCCcEeEEE---eccc-e
Confidence 887765432211 11111111222222 3567777773 234778888765421111 0011 1
Q ss_pred CceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE--ECCEEEEEeccCCCCCcc
Q 009435 192 DSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLY 267 (535)
Q Consensus 192 ~~~s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~--~~~~iyv~GG~~~~~~~~ 267 (535)
.-.+++.. + .++++.|+.++ .+.+||..+.+-..... ....-.+++. .++.+++.||.+.
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~------~i~iwd~~~~~~~~~~~-----H~~~V~~vafsP~d~~~l~s~s~Dg----- 334 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDC------TVAVLDADFSEVFRDLS-----HRDFVTGVAWSPLDHSKFTTVGWDH----- 334 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTS------CEEEECTTSCEEEEECC-----CSSCEEEEEECSSSTTEEEEEETTS-----
T ss_pred eEEEEEEcCCCCCEEEEEeCCC------EEEEEECCCCcEeEECC-----CCCCEEEEEEeCCCCCEEEEEcCCC-----
Confidence 11222222 3 45677777543 38889998876443321 1111122332 2567888888643
Q ss_pred CcEEEEecCC
Q 009435 268 DDLYMIDVDS 277 (535)
Q Consensus 268 ~dv~~yd~~~ 277 (535)
.|.+||+.+
T Consensus 335 -~v~iW~~~~ 343 (357)
T 4g56_B 335 -KVLHHHLPS 343 (357)
T ss_dssp -CEEEEECC-
T ss_pred -eEEEEECCC
Confidence 378888754
No 134
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=92.63 E-value=5.1 Score=40.74 Aligned_cols=160 Identities=9% Similarity=-0.003 Sum_probs=78.3
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECC
Q 009435 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE 174 (535)
Q Consensus 95 ~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~ 174 (535)
+++++.|+.+ ..+.+||+.+......-..+. .......... ++++++.|+. ...+.+||+.
T Consensus 210 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~s-d~~~l~s~~~-----------d~~v~vwd~~ 270 (450)
T 2vdu_B 210 HQFIITSDRD-----EHIKISHYPQCFIVDKWLFGH--KHFVSSICCG-KDYLLLSAGG-----------DDKIFAWDWK 270 (450)
T ss_dssp CEEEEEEETT-----SCEEEEEESCTTCEEEECCCC--SSCEEEEEEC-STTEEEEEES-----------SSEEEEEETT
T ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeeeecCC--CCceEEEEEC-CCCEEEEEeC-----------CCeEEEEECC
Confidence 7788888764 468888887665332111111 1111112222 6667777773 2467888988
Q ss_pred CccEEEeccCCC-----------C----------CCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEEC--C-CCcE
Q 009435 175 TFVWKRATTSGN-----------P----------PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDT--D-TLTW 229 (535)
Q Consensus 175 t~~W~~~~~~~~-----------~----------p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~--~-t~~W 229 (535)
+.+....-.... . ........++.. ++.++++++... +.+.+||+ . ...+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l 345 (450)
T 2vdu_B 271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDL 345 (450)
T ss_dssp TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCE
T ss_pred CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCce
Confidence 766433221000 0 001111122222 344444444221 34788887 3 3445
Q ss_pred EEeecCCCCCCCceeeEEEEECCEEEEEeccCCCC---CccCcEEEEecCCCcEE
Q 009435 230 KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ---NLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 230 ~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~---~~~~dv~~yd~~~~~W~ 281 (535)
..+.. ......-.+++...+.+++..+..... ...-.+|.++.+++.|.
T Consensus 346 ~~~~~---~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 346 ALKQI---ITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEE---EECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred eeccE---eccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 55543 222222334555667777776653211 11225777787788885
No 135
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=92.60 E-value=6.7 Score=36.64 Aligned_cols=191 Identities=8% Similarity=-0.040 Sum_probs=96.8
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
+++..++.||+.... ...+++||+ +.+........ ....-++++.. ++++|+..-. ...+++||
T Consensus 104 i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~ 168 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTENQ-----NNAIGRIT 168 (299)
T ss_dssp EEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEEEC
T ss_pred eEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeCC-----CCEEEEEc
Confidence 334334457775432 246888998 66655543211 11122333333 5678886521 24689999
Q ss_pred CCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCcee
Q 009435 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (535)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s 195 (535)
+ +.+......... ...-.+++.. +++||+.... .+.+.+||+ +..+....... . ...-.+
T Consensus 169 ~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~--~-~~~~~~ 229 (299)
T 2z2n_A 169 E-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEII-----------GNKIGRITT-SGEITEFKIPT--P-NARPHA 229 (299)
T ss_dssp T-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSS--T-TCCEEE
T ss_pred C-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccC-----------CceEEEECC-CCcEEEEECCC--C-CCCcee
Confidence 9 777655421111 1111233333 3678886531 246889999 77776653211 1 111223
Q ss_pred EEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEe
Q 009435 196 CSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMID 274 (535)
Q Consensus 196 ~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd 274 (535)
++.. ++.||+.... .+.+.+||+ +.+...+..... .. .-.+++..++.+|+... .+.+.+||
T Consensus 230 i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~~--~~-~~~~i~~~~g~l~v~~~-------~~~l~~~~ 292 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWG------ANKIGRLTS-NNIIEEYPIQIK--SA-EPHGICFDGETIWFAME-------CDKIGKLT 292 (299)
T ss_dssp EEECSTTCEEEEETT------TTEEEEEET-TTEEEEEECSSS--SC-CEEEEEECSSCEEEEET-------TTEEEEEE
T ss_pred EEECCCCCEEEeccC------CceEEEECC-CCceEEEeCCCC--CC-ccceEEecCCCEEEEec-------CCcEEEEE
Confidence 3333 5678876421 245899998 455555532111 11 12233335567777643 13488888
Q ss_pred cCCCc
Q 009435 275 VDSGL 279 (535)
Q Consensus 275 ~~~~~ 279 (535)
+.+++
T Consensus 293 ~~~~~ 297 (299)
T 2z2n_A 293 LIKDN 297 (299)
T ss_dssp EC---
T ss_pred cCccc
Confidence 87653
No 136
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.58 E-value=2.8 Score=40.34 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=22.8
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEE
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ 74 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~ 74 (535)
+..+..++++.+|+.+.. ...+++||+.+.+...
T Consensus 46 ~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEE
T ss_pred ceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcEEE
Confidence 344455667778887642 2569999998887553
No 137
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.54 E-value=12 Score=40.00 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=103.4
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECC--
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS-- 118 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~-- 118 (535)
++.+|+.... .+.+.++|..+++-.. .++....-|.++.- +..+|+.+. .+.+.+||+.
T Consensus 166 ~~~~~V~~~~------~~~V~viD~~t~~v~~-----~i~~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~ 228 (567)
T 1qks_A 166 ENLFSVTLRD------AGQIALIDGSTYEIKT-----VLDTGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWMK 228 (567)
T ss_dssp GGEEEEEETT------TTEEEEEETTTCCEEE-----EEECSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSS
T ss_pred CceEEEEeCC------CCeEEEEECCCCeEEE-----EEeCCCCccceEECCCCCEEEEEcC------CCeEEEEECCCC
Confidence 4567776442 2579999999876543 12223333444433 345777642 2479999995
Q ss_pred CCeEE-eccccCCCCCCCCCeEEEEE-----CC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEe-ccCCC----
Q 009435 119 SHTWI-SPSVRGEGPEAREGHSAALV-----GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA-TTSGN---- 186 (535)
Q Consensus 119 t~~W~-~~~~~g~~p~~r~~hs~~~~-----~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~-~~~~~---- 186 (535)
+.+-. .+.. |. .| ..++.. ++ .+|+..- ..+.+.++|..+.+-.+. ...+.
T Consensus 229 t~~~v~~i~~-G~--~P---~~ia~s~~~~pDGk~l~v~n~-----------~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 229 EPTTVAEIKI-GS--EA---RSIETSKMEGWEDKYAIAGAY-----------WPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp SCCEEEEEEC-CS--EE---EEEEECCSTTCTTTEEEEEEE-----------ETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred CCcEeEEEec-CC--CC---ceeEEccccCCCCCEEEEEEc-----------cCCeEEEEECCCCcEEEEEecccccccc
Confidence 54322 2221 21 12 233333 34 5666533 235677888777654332 21110
Q ss_pred ---CCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCE-EEEEeccC
Q 009435 187 ---PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGFT 261 (535)
Q Consensus 187 ---~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~-iyv~GG~~ 261 (535)
.|.+|.....+..++..+++-=. ..+.++..|..+.....+.. .+..+.-|..... +++ +|+....
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~~- 362 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAANA- 362 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEGG-
T ss_pred ccccCCCceEEEEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeee---eeccccccCceECCCCCEEEEEeCC-
Confidence 12334333333333333333111 23568888887766544443 3445555554433 333 4443322
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeC-CCCCCC
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITT-GEGPSA 292 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~-~~~p~~ 292 (535)
.+.|.++|.++++-...... +..|.+
T Consensus 363 -----sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 363 -----RNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp -----GTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred -----CCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 46699999999875544444 444544
No 138
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=92.39 E-value=4.6 Score=37.38 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=92.1
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
+.||+... + +.+++||+.......+.. .....-++++.. +++||+.... ...++++|..+...
T Consensus 78 g~l~v~~~-~------~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 78 GTVYVTDF-N------NRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQ 141 (270)
T ss_dssp CCEEEEET-T------TEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSC
T ss_pred CCEEEEcC-C------CEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----CCEEEEEECCCcee
Confidence 34777643 1 468889987765544321 111122333333 5678887532 24688887665543
Q ss_pred EeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee-C
Q 009435 123 ISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-K 200 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~ 200 (535)
...... ... .-..++.. ++++|+.... .+.+++||+....-...... .. ..-..++.. +
T Consensus 142 ~~~~~~-~~~---~p~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~d~~ 202 (270)
T 1rwi_B 142 TVLPFT-GLN---DPDGVAVDNSGNVYVTDTD-----------NNRVVKLEAESNNQVVLPFT-DI---TAPWGIAVDEA 202 (270)
T ss_dssp EECCCC-SCC---SCCCEEECTTCCEEEEEGG-----------GTEEEEECTTTCCEEECCCS-SC---CSEEEEEECTT
T ss_pred Eeeccc-cCC---CceeEEEeCCCCEEEEECC-----------CCEEEEEecCCCceEeeccc-CC---CCceEEEECCC
Confidence 322111 111 11233433 4678887541 24688999887654433211 11 112233333 4
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
+.||+....+ +.+.+||+.+..-......+ ...-.+++.. ++++|+..... +.|.+|++..
T Consensus 203 g~l~v~~~~~------~~v~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~~------~~v~~~~~~~ 264 (270)
T 1rwi_B 203 GTVYVTEHNT------NQVVKLLAGSTTSTVLPFTG----LNTPLAVAVDSDRTVYVADRGN------DRVVKLTSLE 264 (270)
T ss_dssp CCEEEEETTT------SCEEEECTTCSCCEECCCCS----CSCEEEEEECTTCCEEEEEGGG------TEEEEECCCG
T ss_pred CCEEEEECCC------CcEEEEcCCCCcceeeccCC----CCCceeEEECCCCCEEEEECCC------CEEEEEcCCC
Confidence 5788775422 35889998776433322111 1112223332 46788776542 3477777654
No 139
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=92.38 E-value=7.6 Score=36.75 Aligned_cols=218 Identities=12% Similarity=0.079 Sum_probs=100.4
Q ss_pred EEEEcCCCEEEEECCcC-CCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-C-CEEEEEcCCCCCCCCCcEE
Q 009435 37 CNAIKGGRFLYVFGGYG-KDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-G-ENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~-~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~Iyv~GG~~~~~~~~~~~ 113 (535)
.+++..++.+|+..... ........+++||+.++++..+...........-++++.. + ++||+.... +.++
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~ 95 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLL 95 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEE
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEE
Confidence 34443444688771100 0000124699999988888765420000001112233332 4 688887642 3699
Q ss_pred EEECCCCeEEec-cccCCCCCCCCCeEEEEE-CCEEEEEcCCCC----CCCCCCceeeeeEEEEECCCccEEEeccCCCC
Q 009435 114 ILDTSSHTWISP-SVRGEGPEAREGHSAALV-GKRLFIFGGCGK----SSNTNDEVYYNDLYILNTETFVWKRATTSGNP 187 (535)
Q Consensus 114 ~yd~~t~~W~~~-~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~----~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~ 187 (535)
+||+. ++.... ...........-..++.. ++++|+...... ............++++|+. .+...+......
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~ 173 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF 173 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC
Confidence 99998 776554 211111111112233332 467887654210 0000011123678999987 555544211111
Q ss_pred CCCCCceeEEee-----CC-EEEEEecCCCCCcccCceEEEECC-CCcEEEeecCCCCCCC--ceeeEEEE-ECCEEEEE
Q 009435 188 PSARDSHTCSSW-----KN-KIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSP--RAGHSTVA-FGKNLFVF 257 (535)
Q Consensus 188 p~~r~~~s~~~~-----~~-~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~v~~~g~~p~~--R~~hs~v~-~~~~iyv~ 257 (535)
...++.. ++ .||+.... .+.+++||+. +.++.........+.. ..-..++. -++.+|+.
T Consensus 174 -----~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 174 -----PNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp -----EEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred -----cceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE
Confidence 1233333 33 46666432 2458888875 4443321110001111 11122332 24678776
Q ss_pred eccCCCCCccCcEEEEecCCCc
Q 009435 258 GGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
... .+.|.+||+.+..
T Consensus 243 ~~~------~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 243 NWG------SSHIEVFGPDGGQ 258 (314)
T ss_dssp EET------TTEEEEECTTCBS
T ss_pred EcC------CCEEEEEcCCCCc
Confidence 432 1358999998544
No 140
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=92.33 E-value=9.7 Score=37.88 Aligned_cols=154 Identities=13% Similarity=0.123 Sum_probs=74.0
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++....++..++.|+.+ ..+.+||..+.+-...- .+. ...-.+++.. ++..++.|+.+ ..+.+|
T Consensus 128 ~v~~s~dg~~l~s~~~d------~~i~iwd~~~~~~~~~~-~~h---~~~v~~~~~~p~~~~l~s~s~d-----~~v~iw 192 (393)
T 1erj_A 128 SVCFSPDGKFLATGAED------RLIRIWDIENRKIVMIL-QGH---EQDIYSLDYFPSGDKLVSGSGD-----RTVRIW 192 (393)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE-CCC---SSCEEEEEECTTSSEEEEEETT-----SEEEEE
T ss_pred EEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEE-ccC---CCCEEEEEEcCCCCEEEEecCC-----CcEEEE
Confidence 44444334456666643 35889999887654421 111 1111222222 45556666654 468889
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec-cCCCCCCCC-
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT-TSGNPPSAR- 191 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~-~~~~~p~~r- 191 (535)
|+.+.+....-. .. ..-.+++.. ++++++.|+.+ ..+.+||+.+..-...- .........
T Consensus 193 d~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~l~~~s~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 193 DLRTGQCSLTLS---IE--DGVTTVAVSPGDGKYIAAGSLD-----------RAVRVWDSETGFLVERLDSENESGTGHK 256 (393)
T ss_dssp ETTTTEEEEEEE---CS--SCEEEEEECSTTCCEEEEEETT-----------SCEEEEETTTCCEEEEEC------CCCS
T ss_pred ECCCCeeEEEEE---cC--CCcEEEEEECCCCCEEEEEcCC-----------CcEEEEECCCCcEEEeecccccCCCCCC
Confidence 998877543221 11 111122222 45677777742 34778888776533221 100000000
Q ss_pred -CceeEEee-CCEEEEEecCCCCCcccCceEEEECCCC
Q 009435 192 -DSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTL 227 (535)
Q Consensus 192 -~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~ 227 (535)
.-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~------~v~~wd~~~~ 288 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDR------SVKLWNLQNA 288 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTS------EEEEEEC---
T ss_pred CCEEEEEECCCCCEEEEEeCCC------EEEEEECCCC
Confidence 11122222 566777777553 3777887653
No 141
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=92.17 E-value=2.9 Score=41.33 Aligned_cols=188 Identities=11% Similarity=0.091 Sum_probs=89.1
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE---CCEEEEEcCCCCCCCCCcEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
+.+..++..++.|+.+ ..+.++|..+++-...- .+. ...-.++.+ +..+++.|+.++ .+.+
T Consensus 133 v~~spdg~~l~sgs~d------~~i~iwd~~~~~~~~~~-~~h----~~~V~~~~~~~~~~~~l~s~s~D~-----~v~i 196 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKD------ICIKVWDLAQQVVLSSY-RAH----AAQVTCVAASPHKDSVFLSCSEDN-----RILL 196 (344)
T ss_dssp EEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE-CCC----SSCEEEEEECSSCTTEEEEEETTS-----CEEE
T ss_pred EEECCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-cCc----CCceEEEEecCCCCCceeeecccc-----cccc
Confidence 3343333455666543 35788898877544321 111 111122222 335777787653 5888
Q ss_pred EECCCCeEEe-ccccCCCCCCCCCeEEEE-E--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE-EeccCCCCCC
Q 009435 115 LDTSSHTWIS-PSVRGEGPEAREGHSAAL-V--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPS 189 (535)
Q Consensus 115 yd~~t~~W~~-~~~~g~~p~~r~~hs~~~-~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~-~~~~~~~~p~ 189 (535)
||+.+.+-.. +. .........++. . ++++++.|+.+ ..|.++|+.+.+-. .+.. .
T Consensus 197 wd~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~l~sg~~d-----------g~v~~wd~~~~~~~~~~~~-----h 256 (344)
T 4gqb_B 197 WDTRCPKPASQIG----CSAPGYLPTSLAWHPQQSEVFVFGDEN-----------GTVSLVDTKSTSCVLSSAV-----H 256 (344)
T ss_dssp EETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETT-----------SEEEEEESCC--CCEEEEC-----C
T ss_pred ccccccceeeeee----cceeeccceeeeecCCCCcceEEeccC-----------CcEEEEECCCCcEEEEEcC-----C
Confidence 9988765322 11 111111112222 2 35677877732 35778888764321 1110 0
Q ss_pred CCCceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEeccCCCCC
Q 009435 190 ARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQN 265 (535)
Q Consensus 190 ~r~~~s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~~~~~ 265 (535)
...-.+++.. + ..+++.|+.++ .+.+||..+.+-..+.. . ...-.+++.. +..+++.||.+.
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~------~i~vwd~~~~~~~~~~~--H---~~~V~~v~~sp~~~~llas~s~D~--- 322 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDC------SLAVLDSSLSELFRSQA--H---RDFVRDATWSPLNHSLLTTVGWDH--- 322 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTS------CEEEECTTCCEEEEECC--C---SSCEEEEEECSSSTTEEEEEETTS---
T ss_pred CCCEEEEEEccCCCeEEEEEeCCC------eEEEEECCCCcEEEEcC--C---CCCEEEEEEeCCCCeEEEEEcCCC---
Confidence 1111222222 3 35677777653 37889988875433321 1 1111222222 345777777643
Q ss_pred ccCcEEEEecCCC
Q 009435 266 LYDDLYMIDVDSG 278 (535)
Q Consensus 266 ~~~dv~~yd~~~~ 278 (535)
.|.++++.+.
T Consensus 323 ---~v~~w~v~~~ 332 (344)
T 4gqb_B 323 ---QVVHHVVPTE 332 (344)
T ss_dssp ---CEEEEECCC-
T ss_pred ---eEEEEECCCC
Confidence 3677776653
No 142
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=92.14 E-value=8.6 Score=41.16 Aligned_cols=216 Identities=9% Similarity=-0.046 Sum_probs=111.5
Q ss_pred EEcCCCEEEEECCcCC----CCCCcceEEEEEcCC------CeEEEeeccCCCCCCCCceE-EEEECCEEEEEcCCCCC-
Q 009435 39 AIKGGRFLYVFGGYGK----DNCQTNQVHVFDTVN------QTWSQPVIKGSPPTPRDSHS-CTTVGENLYVFGGTDGM- 106 (535)
Q Consensus 39 ~v~~~~~Iyi~GG~~~----~~~~~~~~~~yd~~t------~~W~~l~~~g~~P~~R~~hs-~~~~~~~Iyv~GG~~~~- 106 (535)
..++++.|+... .+. ......+++++|..+ .+...+.. .. ...... +..-+++.+++...+..
T Consensus 137 ~spDg~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~SpDG~~la~~~~~~~~ 211 (662)
T 3azo_A 137 LLPERGEVWCMA-EEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD-DA---HRFVTGPRLSPDGRQAVWLAWDHPR 211 (662)
T ss_dssp EETTTTEEEEEE-EEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC-SC---SSEECCCEECTTSSEEEEEEECTTC
T ss_pred ECCCCCEEEEEE-ecccCCCCCCceeEEEEEECCCCccccCCceeEEEe-cC---CCcccCceECCCCCEEEEEECCCCC
Confidence 345666565443 221 012335799999988 66655430 00 111111 11224544444333221
Q ss_pred C--CCCcEEEEECC-CC---eEEeccccCCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE
Q 009435 107 N--PLRDLHILDTS-SH---TWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (535)
Q Consensus 107 ~--~~~~~~~yd~~-t~---~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~ 179 (535)
. ...+++++|+. +. ....+... . .......+. -++++|+.+..+ + ...++++|+.+.+++
T Consensus 212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~------~---~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 212 MPWEGTELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRT------G---WWNLHRVDPATGAAT 278 (662)
T ss_dssp CTTTCEEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTT------S---SCEEEEECTTTCCEE
T ss_pred CCCCCcEEEEEEECCCCcccccEEeCCC---C-CceEcceEECCCCeEEEEECCC------C---CeEEEEEECCCCcee
Confidence 1 12579999998 56 44443311 0 011122222 256777666532 1 236999999888898
Q ss_pred EeccCCCC-CCCCC---ceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEE-EEECCE
Q 009435 180 RATTSGNP-PSARD---SHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST-VAFGKN 253 (535)
Q Consensus 180 ~~~~~~~~-p~~r~---~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~-v~~~~~ 253 (535)
.+...... ..+.. ...++.. ++++++.+.. + ...++.+|+.+...+.+.. +.. ....+ ..-++.
T Consensus 279 ~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~~l~~----~~~-~~~~~~s~~~~~ 348 (662)
T 3azo_A 279 QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELVDAAG----PWT-EWAATLTVSGTR 348 (662)
T ss_dssp ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEEECCS----SCC-EEEEEEEEETTE
T ss_pred ecccccccccCccccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEEEecC----CCC-eEEEEEecCCCE
Confidence 87532110 00111 1123333 6777776654 2 3468888998888776643 111 12223 344666
Q ss_pred EEEEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 254 LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 254 iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
+++..+... ....+|.+|+.++..+.+..
T Consensus 349 ~~~~~~~~~---~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 349 AVGVAASPR---TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp EEEEEEETT---EEEEEEEEETTTCCEEEEES
T ss_pred EEEEEcCCC---CCCEEEEEECCCCceEEeec
Confidence 666654322 23569999999988887753
No 143
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=92.11 E-value=9.6 Score=37.37 Aligned_cols=229 Identities=14% Similarity=0.078 Sum_probs=105.2
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE-ECCEEEEEcCCCCCCCCCcEEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
+....++..++.||.+ ..+.++|..+....... ..+... -.+++. -++..++.||.+ ..+.+|+
T Consensus 70 ~~~s~d~~~l~s~s~D------g~v~vWd~~~~~~~~~~---~~~~~~-v~~~~~sp~g~~lasg~~d-----~~i~v~~ 134 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQD------GKVIVWDSFTTNKEHAV---TMPCTW-VMACAYAPSGCAIACGGLD-----NKCSVYP 134 (354)
T ss_dssp EEECTTSSEEEEEETT------SEEEEEETTTCCEEEEE---ECSSSC-CCEEEECTTSSEEEEESTT-----SEEEEEE
T ss_pred EEECCCCCEEEEEeCC------CeEEEEECCCCCcceEE---ecCCCC-EEEEEECCCCCEEEEeeCC-----CCEEEEE
Confidence 3343333456666644 45888898776554322 111111 122222 256677888765 3466676
Q ss_pred CCCCeEEec-cccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 117 TSSHTWISP-SVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 117 ~~t~~W~~~-~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
.....-... .....+.........+.. ++..++.|+. ...+.++|+.+.+....-. + ... ..
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-----------D~~v~lwd~~~~~~~~~~~-~--h~~-~v 199 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG-----------DGTCALWDVESGQLLQSFH-G--HGA-DV 199 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET-----------TSEEEEEETTTCCEEEEEE-C--CSS-CE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEEc-C--CCC-Ce
Confidence 543210000 000000000001112222 3344555552 2457788887765433211 0 000 01
Q ss_pred eeEEee---CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCc
Q 009435 194 HTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 194 ~s~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~d 269 (535)
.++... ++.+++.|+.++ .+.+||+.+.+....-. ..... -.++... ++.+++.|+.+. .
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~---~h~~~-v~~v~~~p~~~~l~s~s~D~------~ 263 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAFE---THESD-VNSVRYYPSGDAFASGSDDA------T 263 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEEC---CCSSC-EEEEEECTTSSEEEEEETTS------C
T ss_pred EEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEec---CCCCC-eEEEEEeCCCCEEEEEeCCC------e
Confidence 112221 356788888654 38899998876544321 11111 1122222 456777777543 4
Q ss_pred EEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 270 LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 270 v~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
+.+||+.+..-..+... ...........+ ..++.+++.|+.+.
T Consensus 264 v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~--s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 264 CRLYDLRADREVAIYSK---ESIIFGASSVDF--SLSGRLLFAGYNDY 306 (354)
T ss_dssp EEEEETTTTEEEEEECC---TTCCSCEEEEEE--CTTSSEEEEEETTS
T ss_pred EEEEECCCCcEEEEEcC---CCcccceeEEEE--eCCCCEEEEEECCC
Confidence 88999887643322221 111222222233 34667777776554
No 144
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=92.09 E-value=16 Score=39.78 Aligned_cols=198 Identities=11% Similarity=0.018 Sum_probs=99.6
Q ss_pred cceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCC------C--eEEeccccC
Q 009435 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSS------H--TWISPSVRG 129 (535)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t------~--~W~~~~~~g 129 (535)
...+++++..+.+.....+......+....+...- +++..+++...+....++++++|..+ . .+..+...
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~- 285 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN- 285 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS-
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC-
Confidence 34688888877653211110111112222222222 44433333322222257899999876 4 56665421
Q ss_pred CCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc---cEEEeccCCCCCCCCCceeEEee-CCEEEE
Q 009435 130 EGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF---VWKRATTSGNPPSARDSHTCSSW-KNKIIV 205 (535)
Q Consensus 130 ~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~---~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv 205 (535)
... ........++.||+.+..+ .....++++|+.+. .|+.+.... ....-..++.. ++.+++
T Consensus 286 --~~~-~~~~~s~dg~~l~~~s~~~--------~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 286 --FEG-EYDYVTNEGTVFTFKTNRH--------SPNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp --SSS-CEEEEEEETTEEEEEECTT--------CTTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTTEEEE
T ss_pred --CCc-EEEEEeccCCEEEEEECCC--------CCCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCCEEEE
Confidence 111 1122334467788886632 11356889998775 588876321 11112233444 677777
Q ss_pred EecCCCCCcccCceEEEECCCCc-EEEeecCCCCCCCceeeEEEEE--CC-EEEEE-eccCCCCCccCcEEEEecCCCc-
Q 009435 206 IGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF--GK-NLFVF-GGFTDSQNLYDDLYMIDVDSGL- 279 (535)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t~~-W~~v~~~g~~p~~R~~hs~v~~--~~-~iyv~-GG~~~~~~~~~dv~~yd~~~~~- 279 (535)
....++ ...++++|+.+++ ...+.. + ... ...+.. ++ .+++. .+... -..+|.||+.+++
T Consensus 352 ~~~~~g----~~~l~~~~~~~g~~~~~l~~----~-~~~-v~~~~~s~d~~~l~~~~ss~~~----P~~i~~~d~~tg~~ 417 (710)
T 2xdw_A 352 CYLHDV----KNTLQLHDLATGALLKIFPL----E-VGS-VVGYSGQKKDTEIFYQFTSFLS----PGIIYHCDLTKEEL 417 (710)
T ss_dssp EEEETT----EEEEEEEETTTCCEEEEECC----C-SSE-EEEEECCTTCSEEEEEEECSSC----CCEEEEEETTSSSC
T ss_pred EEEECC----EEEEEEEECCCCCEEEecCC----C-Cce-EEEEecCCCCCEEEEEEeCCCC----CCEEEEEECCCCcc
Confidence 765443 3468999986554 444432 2 111 111222 23 44333 33322 3569999998877
Q ss_pred -EEEEee
Q 009435 280 -WTKVIT 285 (535)
Q Consensus 280 -W~~l~~ 285 (535)
++.+..
T Consensus 418 ~~~~l~~ 424 (710)
T 2xdw_A 418 EPRVFRE 424 (710)
T ss_dssp CCEEEEE
T ss_pred ceEEeee
Confidence 666554
No 145
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=92.07 E-value=8 Score=36.38 Aligned_cols=86 Identities=13% Similarity=0.024 Sum_probs=42.9
Q ss_pred ceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeee
Q 009435 218 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVA 297 (535)
Q Consensus 218 ~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~ 297 (535)
.+..+|..+..-..... .............++.+++.+|..+ ..|.+||+.+.+- +.... .......
T Consensus 222 ~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d-----~~i~iwd~~~~~~--~~~l~---gH~~~V~ 288 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQ-----NQLVIWKYPTMAK--VAELK---GHTSRVL 288 (318)
T ss_dssp EEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTT-----CCEEEEETTTCCE--EEEEC---CCSSCEE
T ss_pred EEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCC-----CEEEEEECCCCcE--EEEEc---CCCCCEE
Confidence 47778887766554433 1111111122222455666656433 3489999887653 22221 0111222
Q ss_pred eeeecccCCCEEEEEcccCCC
Q 009435 298 GDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 298 ~~~~~~~~~~~l~v~GG~~~~ 318 (535)
++.+ ..++.+++.||.+..
T Consensus 289 ~l~~--spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 289 SLTM--SPDGATVASAAADET 307 (318)
T ss_dssp EEEE--CTTSSCEEEEETTTE
T ss_pred EEEE--cCCCCEEEEEecCCe
Confidence 2233 346777788876653
No 146
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=92.07 E-value=5.9 Score=37.55 Aligned_cols=163 Identities=10% Similarity=0.108 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCC--CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 94 GENLYVFGGTDG--MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 94 ~~~Iyv~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
++.+|+..+... ......+++||+.++++..............-++++.. + ++|||... .+.++
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~------------~~~l~ 95 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM------------RLGLL 95 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET------------TTEEE
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC------------CCCEE
Confidence 567887711000 01124699999888887654320000011112233333 4 67888754 13588
Q ss_pred EEECCCccEEEe-ccCCCCCCCCCceeEEe-eCCEEEEEecCCC---------CCcccCceEEEECCCCcEEEeecCCCC
Q 009435 170 ILNTETFVWKRA-TTSGNPPSARDSHTCSS-WKNKIIVIGGEDG---------HDYYLSDVHILDTDTLTWKELNTSGMV 238 (535)
Q Consensus 170 ~yd~~t~~W~~~-~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~---------~~~~~~~i~~yd~~t~~W~~v~~~g~~ 238 (535)
+||+. .+...+ ...........-..++. -++.+|+...... .......+++||+. .+...+... .
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~ 171 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--F 171 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--E
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--C
Confidence 99998 777665 32111110111223333 2677887654321 11123568999987 555544321 1
Q ss_pred CCCceeeEEEEE----C-C-EEEEEeccCCCCCccCcEEEEecC-CCcEE
Q 009435 239 LSPRAGHSTVAF----G-K-NLFVFGGFTDSQNLYDDLYMIDVD-SGLWT 281 (535)
Q Consensus 239 p~~R~~hs~v~~----~-~-~iyv~GG~~~~~~~~~dv~~yd~~-~~~W~ 281 (535)
.. ...++.. . + .+|+.... .+.|++||+. ++.+.
T Consensus 172 ~~---~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 172 QF---PNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIE 212 (314)
T ss_dssp SS---EEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEE
T ss_pred CC---cceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccc
Confidence 11 1233333 2 3 46665432 2458999986 45443
No 147
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=91.90 E-value=7.5 Score=38.61 Aligned_cols=211 Identities=10% Similarity=-0.010 Sum_probs=98.9
Q ss_pred EEEEcC-CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeec--cCCCCCCCCceEEEEE--CC-EEEEEcCCCCCCCCC
Q 009435 37 CNAIKG-GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVI--KGSPPTPRDSHSCTTV--GE-NLYVFGGTDGMNPLR 110 (535)
Q Consensus 37 ~~~v~~-~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~--~g~~P~~R~~hs~~~~--~~-~Iyv~GG~~~~~~~~ 110 (535)
++.+.. ++.+++.|+.+ ..+.+||..++....... ...+......-.++.+ ++ .+++.|+.+ .
T Consensus 86 ~~~~~p~~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----g 154 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----N 154 (402)
T ss_dssp EEEECTTCTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----S
T ss_pred EEEeCCCCCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----C
Confidence 334433 33466666643 458888887764321000 0000000111122222 22 477777754 3
Q ss_pred cEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCC
Q 009435 111 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (535)
Q Consensus 111 ~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~ 189 (535)
.+.+||+.+.+....-. .......-.+++.. ++.+++.|+. ...+.+||+.+.+-...-.. ....
T Consensus 155 ~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~-~~~~ 220 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCR-----------DKRVRVIEPRKGTVVAEKDR-PHEG 220 (402)
T ss_dssp CEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEET-----------TSEEEEEETTTTEEEEEEEC-SSCS
T ss_pred EEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEec-----------CCcEEEEeCCCCceeeeecc-CCCC
Confidence 58999999887543210 00111111222222 4566666663 24688899887654332101 1111
Q ss_pred CCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcE--EEeecCCCCCCCceeeEEEEE-C-CEEEEEeccCCCCC
Q 009435 190 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW--KELNTSGMVLSPRAGHSTVAF-G-KNLFVFGGFTDSQN 265 (535)
Q Consensus 190 ~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W--~~v~~~g~~p~~R~~hs~v~~-~-~~iyv~GG~~~~~~ 265 (535)
.+....+...++.+++.|.... .-..+.+||+.+..- ..... .....-..++.. + ..+++.|+.+
T Consensus 221 ~~~~~~~~~~~~~~l~~g~~~~---~d~~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~g~~d---- 289 (402)
T 2aq5_A 221 TRPVHAVFVSEGKILTTGFSRM---SERQVALWDTKHLEEPLSLQEL----DTSSGVLLPFFDPDTNIVYLCGKGD---- 289 (402)
T ss_dssp SSCCEEEECSTTEEEEEEECTT---CCEEEEEEETTBCSSCSEEEEC----CCCSSCEEEEEETTTTEEEEEETTC----
T ss_pred CcceEEEEcCCCcEEEEeccCC---CCceEEEEcCccccCCceEEec----cCCCceeEEEEcCCCCEEEEEEcCC----
Confidence 1122223333677777773211 124588999876432 11111 111111223333 3 3555666543
Q ss_pred ccCcEEEEecCCCc--EEEEee
Q 009435 266 LYDDLYMIDVDSGL--WTKVIT 285 (535)
Q Consensus 266 ~~~dv~~yd~~~~~--W~~l~~ 285 (535)
..|.+||+.+.. ...+..
T Consensus 290 --g~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 290 --SSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp --SCEEEEEECSSTTCEEEEEE
T ss_pred --CeEEEEEecCCCcceEeecc
Confidence 248899988776 444443
No 148
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.73 E-value=16 Score=39.08 Aligned_cols=117 Identities=15% Similarity=0.275 Sum_probs=62.8
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCCC---CCceEEEEECCEEEEEcCCCCCCCCCcEEEEEC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTP---RDSHSCTTVGENLYVFGGTDGMNPLRDLHILDT 117 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~---R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~ 117 (535)
++.||+.... +.++.+|..+. .|+.-........+ ....+.+..+++||+... -..++.+|.
T Consensus 68 ~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~AlD~ 134 (582)
T 1flg_A 68 DGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVALNK 134 (582)
T ss_dssp TTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEEEES
T ss_pred CCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEEEEC
Confidence 5678886552 23999998775 68863211110001 112344567899988642 247999999
Q ss_pred CCCe--EEeccccCCCCCCC--CCeEEEEECC------EEEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEe
Q 009435 118 SSHT--WISPSVRGEGPEAR--EGHSAALVGK------RLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 181 (535)
Q Consensus 118 ~t~~--W~~~~~~g~~p~~r--~~hs~~~~~~------~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~ 181 (535)
.|.+ |+.... . +... ...+-++.++ .+|+ |... .+......++.||..+. .|+.-
T Consensus 135 ~TG~~~W~~~~~--~-~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~-----~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 135 NTGKVVWKKKFA--D-HGAGYTMTGAPTIVKDGKTGKVLLIH-GSSG-----DEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp SSCCEEEEEECS--C-GGGTCBCCSCCEEEECTTTCCEEEEE-CCBC-----GGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCCEEeeecCC--C-CCcCcccccCCEEeCCCcCCcEEEEE-eccc-----cccCCCCEEEEEECCCCCEEeecC
Confidence 8875 875321 1 1111 1112234455 5554 3311 01112467999999875 48654
No 149
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.67 E-value=2.5 Score=42.97 Aligned_cols=198 Identities=10% Similarity=0.014 Sum_probs=93.8
Q ss_pred eEEEEc-CCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEee-ccCCCCCCCCceEEEE--ECCEEEEEcCCCCCCCCCc
Q 009435 36 TCNAIK-GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-IKGSPPTPRDSHSCTT--VGENLYVFGGTDGMNPLRD 111 (535)
Q Consensus 36 ~~~~v~-~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~-~~g~~P~~R~~hs~~~--~~~~Iyv~GG~~~~~~~~~ 111 (535)
++++.. .+..+++.|+.+ ..+.+||..+..-..+. ..+. ...-.+++. .++.+++.|+.++ .
T Consensus 123 ~~l~~~P~~~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~-----~ 188 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGA---GGSITGLKFNPLNTNQFYASSMEG-----T 188 (435)
T ss_dssp EEEEECSSCTTCEEEEETT------SCEEEECSSCCSCCEEECCCSS---SCCCCEEEECSSCTTEEEEECSSS-----C
T ss_pred EEEEEeCCCCCEEEEEeCC------CEEEEEECCCCCceeEEEccCC---CCCEEEEEEeCCCCCEEEEEeCCC-----E
Confidence 344553 234477777754 35888888766543321 1111 111122222 2456777777653 4
Q ss_pred EEEEECCCCeEEeccccCCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCC
Q 009435 112 LHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (535)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~ 190 (535)
+.++|+.++.......... ......++.. .++.+++.|+. ...+.++|+....-..+. .. .
T Consensus 189 v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~-----------dg~i~~wd~~~~~~~~~~----~h-~ 250 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDT--INIWFCSLDVSASSRMVVTGDN-----------VGNVILLNMDGKELWNLR----MH-K 250 (435)
T ss_dssp EEEEETTSCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECS-----------SSBEEEEESSSCBCCCSB----CC-S
T ss_pred EEEeeccCCceeEEeccCC--CCccEEEEEECCCCCEEEEEeC-----------CCcEeeeccCcceeEEEe----cc-c
Confidence 7888988876654432111 1111222333 35677777773 234777887654221111 00 0
Q ss_pred CCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE--ECCEEEEEeccCCCCCc
Q 009435 191 RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNL 266 (535)
Q Consensus 191 r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~--~~~~iyv~GG~~~~~~~ 266 (535)
..-.+++.. ++.+++.|+.++ .+.+||+.+..-..... ........-..+. -++..++.|+.+
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~------~v~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~spdg~~l~s~~~D----- 317 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQ------TVKIWDLRQVRGKASFL--YSLPHRHPVNAACFSPDGARLLTTDQK----- 317 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTS------BCCEEETTTCCSSSCCS--BCCBCSSCEEECCBCTTSSEEEEEESS-----
T ss_pred ceEEeeeecCCCceEEEEecCcc------eeeEEecccccccceEE--EeeeccccccceeECCCCCeeEEEcCC-----
Confidence 011122222 345777777553 36678876543111000 0000011111121 245667777753
Q ss_pred cCcEEEEecCCCc
Q 009435 267 YDDLYMIDVDSGL 279 (535)
Q Consensus 267 ~~dv~~yd~~~~~ 279 (535)
..|.+||+.+..
T Consensus 318 -~~i~iwd~~~~~ 329 (435)
T 4e54_B 318 -SEIRVYSASQWD 329 (435)
T ss_dssp -SCEEEEESSSSS
T ss_pred -CEEEEEECCCCc
Confidence 248899987653
No 150
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.63 E-value=7.7 Score=37.22 Aligned_cols=90 Identities=12% Similarity=0.018 Sum_probs=47.2
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE---ECCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT---VGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~---~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 136 (535)
..+.+||..+.+...+.. .. ..-.++.. -++++++.|+.+ ..+.+||+.+.+-... ......
T Consensus 108 g~v~iwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~-----~~~~~~ 172 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQ---HD--APVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPMMV-----LQLPER 172 (368)
T ss_dssp SEEEEEETTTTEEEEEEE---CS--SCEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCSEE-----EECSSC
T ss_pred CcEEEEEcCCCCceeecc---cc--CceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEEEE-----EecCCC
Confidence 468889998887665431 11 11122222 256777777764 3588888876542111 111112
Q ss_pred CeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc
Q 009435 137 GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 176 (535)
Q Consensus 137 ~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~ 176 (535)
..+.....+.+++.++ ...+.+||....
T Consensus 173 ~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~ 200 (368)
T 3mmy_A 173 CYCADVIYPMAVVATA------------ERGLIVYQLENQ 200 (368)
T ss_dssp EEEEEEETTEEEEEEG------------GGCEEEEECSSS
T ss_pred ceEEEecCCeeEEEeC------------CCcEEEEEeccc
Confidence 2333444555555444 245677777654
No 151
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=91.63 E-value=8 Score=40.96 Aligned_cols=222 Identities=15% Similarity=0.120 Sum_probs=106.2
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-C-CEEEEEcCCCCCCCCCcEEEEEC--C
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-G-ENLYVFGGTDGMNPLRDLHILDT--S 118 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~Iyv~GG~~~~~~~~~~~~yd~--~ 118 (535)
++.+|+.+..+ +.+.++|..+.+-...-..+ ..-|+++.. + ..+|+.+. + +.+.+||+ .
T Consensus 148 ~~~~~vs~~~d------~~V~v~D~~t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~ 210 (543)
T 1nir_A 148 PNLFSVTLRDA------GQIALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGR-D-----ARIDMIDLWAK 210 (543)
T ss_dssp GGEEEEEEGGG------TEEEEEETTTCCEEEEEECS-----TTEEEEEECTTSCEEEEEET-T-----SEEEEEETTSS
T ss_pred CCEEEEEEcCC------CeEEEEECCCceEEEEEecC-----cccceEEECCCCCEEEEECC-C-----CeEEEEECcCC
Confidence 45677776532 56889999887654321112 124544343 3 45666653 2 67999999 6
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEE-----CC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEe-ccCCC-----
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALV-----GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA-TTSGN----- 186 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~-----~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~-~~~~~----- 186 (535)
+.+-...-..+ ..-+.++.. ++ .+|+..- ..+.+.++|..+.+-.+. ...+.
T Consensus 211 t~~~~~~i~~g-----~~p~~va~sp~~~~dg~~l~v~~~-----------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 211 EPTKVAEIKIG-----IEARSVESSKFKGYEDRYTIAGAY-----------WPPQFAIMDGETLEPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp SCEEEEEEECC-----SEEEEEEECCSTTCTTTEEEEEEE-----------ESSEEEEEETTTCCEEEEEECCEECSSSC
T ss_pred CCcEEEEEecC-----CCcceEEeCCCcCCCCCEEEEEEc-----------cCCeEEEEeccccccceeecccCcccCcc
Confidence 66543211111 111233332 44 4555432 135577888877654332 22110
Q ss_pred --CCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCE-EEEEeccC
Q 009435 187 --PPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGFT 261 (535)
Q Consensus 187 --~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~-iyv~GG~~ 261 (535)
.+.+|........ +..+|+-... .+.++.+|..+.+-..+.. .+..+.-+.++.. +++ +|+.+..
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~va~~~- 344 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMTAANN- 344 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEEEEGG-
T ss_pred ccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEEEecC-
Confidence 1222333323333 4455554432 2468899987643211111 1112222223322 444 4444322
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEccc
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 315 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (535)
.+.|.++|..+++-...-..+..|.+..... +. ...++.+|+.+..
T Consensus 345 -----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--~~-~p~~g~~~~s~~~ 390 (543)
T 1nir_A 345 -----SNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--FV-HPKYGPVWSTSHL 390 (543)
T ss_dssp -----GTEEEEEETTTTEEEEEEECSSSBCCTTCEE--EE-ETTTEEEEEEEBS
T ss_pred -----CCeEEEEECCCCeEEEeeccCCCCCCCCCcc--cC-CCCCccEEEeccC
Confidence 3458999999987655444433343321111 11 1334777777643
No 152
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=91.56 E-value=3.9 Score=40.80 Aligned_cols=197 Identities=10% Similarity=0.054 Sum_probs=93.6
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
.+++.|+.+ ..+.+||..+.+....-. .........++.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 145 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 145 NVLLSAGCD------NVILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTV 210 (402)
T ss_dssp TEEEEEETT------SCEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEE
T ss_pred CEEEEEcCC------CEEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCce
Confidence 366666643 358899998886654210 0111112222333 56677777654 4699999988765
Q ss_pred EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE--EEeccCCCCCCCCCceeEEee-
Q 009435 123 ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW--KRATTSGNPPSARDSHTCSSW- 199 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W--~~~~~~~~~p~~r~~~s~~~~- 199 (535)
...-.. .....+....+...++++++.|... .....+.+||+.+..- .... .........++..
T Consensus 211 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~~~--------~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 211 VAEKDR-PHEGTRPVHAVFVSEGKILTTGFSR--------MSERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDP 277 (402)
T ss_dssp EEEEEC-SSCSSSCCEEEECSTTEEEEEEECT--------TCCEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEET
T ss_pred eeeecc-CCCCCcceEEEEcCCCcEEEEeccC--------CCCceEEEEcCccccCCceEEe----ccCCCceeEEEEcC
Confidence 332101 1111112222333356777776210 0135688899876431 1111 0111112222222
Q ss_pred -CCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecC
Q 009435 200 -KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (535)
Q Consensus 200 -~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (535)
+..|++.|+.++ .+.+||+.+.+ ...+... .....-.+++...+..+++.+. ..+.+|++.
T Consensus 278 ~~~~l~~~g~~dg------~i~i~d~~~~~~~~~~l~~~---~~~~~v~~~~~sp~~~~~~s~~-------~~~~~~~l~ 341 (402)
T 2aq5_A 278 DTNIVYLCGKGDS------SIRYFEITSEAPFLHYLSMF---SSKESQRGMGYMPKRGLEVNKC-------EIARFYKLH 341 (402)
T ss_dssp TTTEEEEEETTCS------CEEEEEECSSTTCEEEEEEE---CCSSCCSEEEECCGGGSCGGGT-------EEEEEEEEE
T ss_pred CCCEEEEEEcCCC------eEEEEEecCCCcceEeeccc---ccCCcccceEEecccccceecc-------eeEEEEEcC
Confidence 345666665443 48888887765 4444331 1111112233333322222221 246777777
Q ss_pred CCcEEEEe
Q 009435 277 SGLWTKVI 284 (535)
Q Consensus 277 ~~~W~~l~ 284 (535)
++..+.+.
T Consensus 342 ~~~~~~i~ 349 (402)
T 2aq5_A 342 ERKCEPIA 349 (402)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEE
Confidence 77665554
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.40 E-value=9.5 Score=36.13 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=96.1
Q ss_pred eEEEEcCCCEEEEECCc---CCCCC--CcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CC-EEEEEcCCCCCCC
Q 009435 36 TCNAIKGGRFLYVFGGY---GKDNC--QTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNP 108 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~---~~~~~--~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Iyv~GG~~~~~~ 108 (535)
..+..++++.||+.... ..... ..+.+++||..+.+....-..+. .-+.++.. ++ .||+.+
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~------- 153 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGLG------- 153 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEES-------
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEeC-------
Confidence 34444566677776421 00000 12679999998876654321121 12223332 34 466662
Q ss_pred CCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCC------------CCCCCCceeeeeEEEEECCCc
Q 009435 109 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGK------------SSNTNDEVYYNDLYILNTETF 176 (535)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~------------~~~~~~~~~~n~v~~yd~~t~ 176 (535)
..++++|+.+.+-...-..+..+.+. .....+..+|+.+.... ............++++|+.+.
T Consensus 154 -~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 154 -RDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp -SSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred -CeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 46999999988754322111111111 11111222333221100 000000112336899999887
Q ss_pred cEEEeccCCCCCCCCCceeEEee-CC-EEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CC-
Q 009435 177 VWKRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK- 252 (535)
Q Consensus 177 ~W~~~~~~~~~p~~r~~~s~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~- 252 (535)
+-..+... +.......++.. ++ .+|+. .+.+++||+.+.+-...-..+. .-..++.. ++
T Consensus 230 ~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~---------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~ 292 (337)
T 1pby_B 230 EMAMREVR---IMDVFYFSTAVNPAKTRAFGA---------YNVLESFDLEKNASIKRVPLPH-----SYYSVNVSTDGS 292 (337)
T ss_dssp CEEEEEEE---ECSSCEEEEEECTTSSEEEEE---------ESEEEEEETTTTEEEEEEECSS-----CCCEEEECTTSC
T ss_pred CceEeecC---CCCCceeeEEECCCCCEEEEe---------CCeEEEEECCCCcCcceecCCC-----ceeeEEECCCCC
Confidence 65533211 111112223332 33 45544 1569999998876543322111 11233333 34
Q ss_pred EEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 253 NLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 253 ~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
.+|+ ++. .+.+.+||+++.+-.
T Consensus 293 ~l~~-~~~------~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 293 TVWL-GGA------LGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEE-ESB------SSEEEEEETTTCCEE
T ss_pred EEEE-EcC------CCcEEEEECcCCcEE
Confidence 4555 433 245999999887543
No 154
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=91.24 E-value=6.7 Score=37.42 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=88.7
Q ss_pred EcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECC
Q 009435 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 40 v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
.++++ +++.|+.+ ..+.+||..+.+-...- .+. . ..-.+++.. ++.+++.|+.+ ..+.++|..
T Consensus 64 ~~~~~-~l~s~s~d------~~i~vwd~~~~~~~~~~-~~h-~--~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~ 127 (304)
T 2ynn_A 64 IARKN-WIIVGSDD------FRIRVFNYNTGEKVVDF-EAH-P--DYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWE 127 (304)
T ss_dssp EGGGT-EEEEEETT------SEEEEEETTTCCEEEEE-ECC-S--SCEEEEEECSSSSEEEEEETT-----SCEEEEEGG
T ss_pred eCCCC-EEEEECCC------CEEEEEECCCCcEEEEE-eCC-C--CcEEEEEEcCCCCEEEEECCC-----CeEEEEECC
Confidence 34444 55556543 45888898876533211 111 1 111122222 45567777754 357788876
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeE
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~ 196 (535)
++.=......+ ....-.+++.. ++.+++.|+.+ ..+.++|+.+..-...... ...+....+
T Consensus 128 ~~~~~~~~~~~---h~~~v~~v~~~p~~~~~l~sgs~D-----------~~v~iwd~~~~~~~~~~~~---~~~~~v~~~ 190 (304)
T 2ynn_A 128 NNWALEQTFEG---HEHFVMCVAFNPKDPSTFASGCLD-----------RTVKVWSLGQSTPNFTLTT---GQERGVNYV 190 (304)
T ss_dssp GTTEEEEEECC---CCSCEEEEEECTTCTTEEEEEETT-----------SEEEEEETTCSSCSEEEEC---CCTTCEEEE
T ss_pred CCcchhhhhcc---cCCcEEEEEECCCCCCEEEEEeCC-----------CeEEEEECCCCCccceecc---CCcCcEEEE
Confidence 54211111011 11111122222 34577777742 3567777754321111000 011111111
Q ss_pred Eee---CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEE
Q 009435 197 SSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 197 ~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
... ++.+++.|+.++ .+.+||+.+.+-...-. + ..... .+++.. ++.+++.|+.+. .|.+
T Consensus 191 ~~~~~~~~~~l~s~s~D~------~i~iWd~~~~~~~~~~~-~--h~~~v-~~~~~~p~~~~l~s~s~Dg------~i~i 254 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDL------TIKIWDYQTKSCVATLE-G--HMSNV-SFAVFHPTLPIIISGSEDG------TLKI 254 (304)
T ss_dssp EECCSTTCCEEEEEETTS------EEEEEETTTTEEEEEEE-C--CSSCE-EEEEECSSSSEEEEEETTS------CEEE
T ss_pred EEEEcCCCCEEEEEcCCC------eEEEEeCCCCccceeeC-C--CCCCE-EEEEECCCCCEEEEEcCCC------eEEE
Confidence 111 455677777543 48889988765322111 0 11111 122222 455777777543 3889
Q ss_pred EecCCCcEEE
Q 009435 273 IDVDSGLWTK 282 (535)
Q Consensus 273 yd~~~~~W~~ 282 (535)
||+.+.+-..
T Consensus 255 Wd~~~~~~~~ 264 (304)
T 2ynn_A 255 WNSSTYKVEK 264 (304)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCceee
Confidence 9988765443
No 155
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=91.19 E-value=11 Score=36.34 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=85.5
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCC--CeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSS--HTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
+++.++.|+.+ ..+.++|+.+ ..+..+... .........+.. ++.+++.|+.+ ..+.
T Consensus 118 ~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D-----------~~i~ 178 (330)
T 2hes_X 118 DGYYLATCSRD-----KSVWIWETDESGEEYECISVL---QEHSQDVKHVIWHPSEALLASSSYD-----------DTVR 178 (330)
T ss_dssp TSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEE---CCCSSCEEEEEECSSSSEEEEEETT-----------SCEE
T ss_pred CCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEe---ccCCCceEEEEECCCCCEEEEEcCC-----------CeEE
Confidence 46677777754 3577888743 233332211 111111122222 45677777742 3456
Q ss_pred EEECCCccEEEeccCCCCCCCCCceeEEee-C--CEEEEEecCCCCCcccCceEEEECCC------CcEEEeecCCCCCC
Q 009435 170 ILNTETFVWKRATTSGNPPSARDSHTCSSW-K--NKIIVIGGEDGHDYYLSDVHILDTDT------LTWKELNTSGMVLS 240 (535)
Q Consensus 170 ~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~--~~lyv~GG~~~~~~~~~~i~~yd~~t------~~W~~v~~~g~~p~ 240 (535)
++|..+..|+.+....... . .-.++... + +.+++.|+.++. +.+||+.+ ..|..+..... ..
T Consensus 179 iW~~~~~~~~~~~~~~~h~-~-~v~~~~~~~~~~~~~l~s~s~D~~------v~iw~~~~~~~~~~~~~~~~~~~~~-~h 249 (330)
T 2hes_X 179 IWKDYDDDWECVAVLNGHE-G-TVWSSDFDKTEGVFRLCSGSDDST------VRVWKYMGDDEDDQQEWVCEAILPD-VH 249 (330)
T ss_dssp EEEEETTEEEEEEEECCCS-S-CEEEEEECCSSSSCEEEEEETTSC------EEEEEEEEECTTSCEEEEEEEECCS-CC
T ss_pred EEECCCCCeeEEEEccCCC-C-cEEEEEecCCCCeeEEEEEeCCCe------EEEEEecCCCccccceeEEeeeccc-cc
Confidence 6676666666554221111 0 11122222 2 345666665432 55555432 24555443110 01
Q ss_pred CceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 241 PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 241 ~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
...-.+++...+.+++.||.+ ..+.+||..++.|..+......... .....+.+.+..++.+++.||.+.
T Consensus 250 ~~~v~~v~~s~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~h~~-~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 250 KRQVYNVAWGFNGLIASVGAD------GVLAVYEEVDGEWKVFAKRALCHGV-YEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp SSCEEEEEECTTSCEEEEETT------SCEEEEEEETTEEEEEEEESCTTTT-SCEEEEEEC-----CCEEEEETTS
T ss_pred ccceEEEEEcCCCEEEEEeCC------CEEEEEEcCCCceEEEecccccccc-ceEEEEEEecCCCceEEEEecCCC
Confidence 122223333345566677753 2488999988888766432111111 112222222122566777787664
No 156
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.16 E-value=9.7 Score=35.50 Aligned_cols=196 Identities=8% Similarity=-0.037 Sum_probs=100.4
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
+++..++.+|+.... ...+++||+. .++..+.... ....-++++.. ++++|+.... ...+++||
T Consensus 67 i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~ 131 (300)
T 2qc5_A 67 LIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----GDRIGKLT 131 (300)
T ss_dssp EEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----TTEEEEEC
T ss_pred EEECCCCCEEEEecC------CCeEEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----CCeEEEEC
Confidence 334334457775431 2468899988 6666544211 11222333333 5778887532 24688999
Q ss_pred CCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCcee
Q 009435 117 TSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (535)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s 195 (535)
+. .+........ ....-+.++.. +++||+.... ...+++||+ +.+...+...... ..-..
T Consensus 132 ~~-g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~---~~~~~ 192 (300)
T 2qc5_A 132 AD-GTIYEYDLPN---KGSYPAFITLGSDNALWFTENQ-----------NNSIGRITN-TGKLEEYPLPTNA---AAPVG 192 (300)
T ss_dssp TT-SCEEEEECSS---TTCCEEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSSTT---CCEEE
T ss_pred CC-CCEEEccCCC---CCCCceeEEECCCCCEEEEecC-----------CCeEEEECC-CCcEEEeeCCCCC---CCcce
Confidence 87 5554332111 11122233332 4678886531 245888998 6666655321111 11223
Q ss_pred EEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEE
Q 009435 196 CSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 196 ~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
++.. ++.||+.... .+.+.+||+ +.++....... ....-..++.- +++||+.... .+.|.+|
T Consensus 193 i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~ 256 (300)
T 2qc5_A 193 ITSGNDGALWFVEIM------GNKIGRITT-TGEISEYDIPT---PNARPHAITAGKNSEIWFTEWG------ANQIGRI 256 (300)
T ss_dssp EEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECSTTCEEEEETT------TTEEEEE
T ss_pred EEECCCCCEEEEccC------CCEEEEEcC-CCcEEEEECCC---CCCCceEEEECCCCCEEEeccC------CCeEEEE
Confidence 3333 5678876432 235889998 66666654211 11111223322 4678876532 2458999
Q ss_pred ecCCCcEEEEe
Q 009435 274 DVDSGLWTKVI 284 (535)
Q Consensus 274 d~~~~~W~~l~ 284 (535)
|+ +.......
T Consensus 257 ~~-~g~~~~~~ 266 (300)
T 2qc5_A 257 TN-DNTIQEYQ 266 (300)
T ss_dssp CT-TSCEEEEE
T ss_pred CC-CCcEEEEE
Confidence 98 55665543
No 157
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=91.13 E-value=8.4 Score=41.92 Aligned_cols=261 Identities=9% Similarity=0.024 Sum_probs=125.1
Q ss_pred CCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCC-CCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECC
Q 009435 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 42 ~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
+|+++|.+--... .....+|+.+.....|+.+-....+... ........+ +++.++|.-..+......++++|+.
T Consensus 78 dG~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 78 RNGRFFYVRTHKD--KEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp ETTEEEEEEECTT--CSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred ECCEEEEEEEcCC--CeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 3555555432111 1235789988888888876421111100 111222222 5555554332222234589999999
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCC--CCCCceeeeeEEEEECCCccE--EEeccCCCCCCCCCce
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSS--NTNDEVYYNDLYILNTETFVW--KRATTSGNPPSARDSH 194 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~--~~~~~~~~n~v~~yd~~t~~W--~~~~~~~~~p~~r~~~ 194 (535)
+++..... ..+.......+-.-+++.++++...... ..........++++++.+..- ..+... ...+....
T Consensus 156 tg~~~~~~---~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~--~~~~~~~~ 230 (695)
T 2bkl_A 156 SGEWSKVD---VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER--TGDPTTFL 230 (695)
T ss_dssp TCCBCSSC---CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC--CCCTTCEE
T ss_pred CCCCcCCc---ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec--CCCCEEEE
Confidence 98764111 1222221222223356666666542210 000112346699999887652 222211 11111222
Q ss_pred eEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEE
Q 009435 195 TCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 195 s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
.... -+++.+++...... ..++++.+|..+..|+.+... .... ...+..++.+|+..... .....|+++
T Consensus 231 ~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~---~~~~--~~~~~~~g~l~~~s~~~---~~~~~l~~~ 300 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG---VGAK--YEVHAWKDRFYVLTDEG---APRQRVFEV 300 (695)
T ss_dssp EEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC---SSCC--EEEEEETTEEEEEECTT---CTTCEEEEE
T ss_pred EEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC---CCce--EEEEecCCcEEEEECCC---CCCCEEEEE
Confidence 2222 25554444443221 245788888888888888652 1111 22223566655554321 123569999
Q ss_pred ecCCCc---EEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEec
Q 009435 274 DVDSGL---WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 330 (535)
Q Consensus 274 d~~~~~---W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~ 330 (535)
|+.+.. |..+.... + ........+ .++.+++....+. ...+|.++.
T Consensus 301 d~~~~~~~~~~~l~~~~--~--~~~l~~~~~---~~~~lv~~~~~dg----~~~l~~~~~ 349 (695)
T 2bkl_A 301 DPAKPARASWKEIVPED--S--SASLLSVSI---VGGHLSLEYLKDA----TSEVRVATL 349 (695)
T ss_dssp BTTBCSGGGCEEEECCC--S--SCEEEEEEE---ETTEEEEEEEETT----EEEEEEEET
T ss_pred eCCCCCccCCeEEecCC--C--CCeEEEEEE---ECCEEEEEEEECC----EEEEEEEeC
Confidence 997754 88876432 1 111222222 2677777654432 235676664
No 158
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.07 E-value=18 Score=38.57 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=67.7
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccCCCCCCCC---CeEEEEECCEEEEEcCCCCCCCCCCce
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPEARE---GHSAALVGKRLFIFGGCGKSSNTNDEV 163 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~---~hs~~~~~~~lyv~GG~~~~~~~~~~~ 163 (535)
+-++.+++||+.... +.++++|..|.+ |+..........+.+ ..+.++.+++||+...
T Consensus 63 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----------- 125 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----------- 125 (582)
T ss_dssp CCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-----------
T ss_pred ccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-----------
Confidence 345679999998753 349999998764 876332111111111 1344567888888533
Q ss_pred eeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCC------EEEEEecCCCCCcccCceEEEECCCCc--EEEe
Q 009435 164 YYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKN------KIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 232 (535)
Q Consensus 164 ~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~------~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v 232 (535)
...++.+|..+. .|+.-........ ....+-++.++ .+|+ |....+......++.||.++.+ |+.-
T Consensus 126 -dg~l~AlD~~TG~~~W~~~~~~~~~~~-~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 126 -DASVVALNKNTGKVVWKKKFADHGAGY-TMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp -TTEEEEEESSSCCEEEEEECSCGGGTC-BCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred -CCEEEEEECCCCCEEeeecCCCCCcCc-ccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence 246899999876 4876431100000 01112233455 4544 4322111124569999998765 8653
No 159
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=91.04 E-value=7.7 Score=35.26 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=80.3
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCC--CeEEEeecc---CCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVN--QTWSQPVIK---GSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t--~~W~~l~~~---g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++.+|+|=| +.+|+++... .......+. +.+|.. --++... ++++|+|-| +..|+|
T Consensus 16 ~g~~yfFkg--------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-------~~yw~~ 78 (195)
T 1itv_A 16 GNQLYLFKD--------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------RQVWVY 78 (195)
T ss_dssp TTEEEEEET--------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET-------TEEEEE
T ss_pred CCEEEEEEC--------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC-------CEEEEE
Confidence 557999866 5688988765 233322221 234432 1223332 678999987 578999
Q ss_pred ECCCCeE-EeccccCCCCCC--CCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE-----Eec-cCCC
Q 009435 116 DTSSHTW-ISPSVRGEGPEA--REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-----RAT-TSGN 186 (535)
Q Consensus 116 d~~t~~W-~~~~~~g~~p~~--r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~-----~~~-~~~~ 186 (535)
+..+..- +.+...| +|.. ....+....++++|+|-| +..|+||..+.+-. .+. .-..
T Consensus 79 ~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg-------------~~ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 79 TGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG-------------RRLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp ETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET-------------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred cCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeC-------------CEEEEEeCCcccccCCCccChhhcCCC
Confidence 8653221 1122111 3321 233333323579999988 45789998764321 111 1111
Q ss_pred CCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcE
Q 009435 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW 229 (535)
Q Consensus 187 ~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W 229 (535)
.| ..-.++...++.+|+|-| +..++||..+.+-
T Consensus 145 vp--~~idaa~~~~g~~Yffkg--------~~y~~~~~~~~~v 177 (195)
T 1itv_A 145 VP--LDTHDVFQFREKAYFCQD--------RFYWRVSSRSELN 177 (195)
T ss_dssp SC--SSCSEEEEETTEEEEEET--------TEEEEEECCTTCC
T ss_pred CC--CCCCEEEEeCCeEEEEeC--------CEEEEEECCccEE
Confidence 12 223345555799999977 3478888876653
No 160
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.98 E-value=7.8 Score=45.07 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=76.7
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
++++..++.+++.||.+ ..+.+||..+.+-...- . .....-.++.+ ++++++.|+.+ ..+.+
T Consensus 620 ~~~~s~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~-~----~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~v 683 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGAD------KTLQVFKAETGEKLLDI-K----AHEDEVLCCAFSSDDSYIATCSAD-----KKVKI 683 (1249)
T ss_dssp EEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEE-C----CCSSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred EEEECCCCCEEEEEeCC------CeEEEEECCCCCEEEEe-c----cCCCCEEEEEEecCCCEEEEEeCC-----CeEEE
Confidence 33444444466667643 35889999887644311 1 11122223333 56677777654 35899
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEEE----CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCC
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAALV----GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~----~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~ 190 (535)
||..+.+....-. ........+.. +..+++.|+. ...+.++|+.+......-. ....
T Consensus 684 wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~sg~~-----------d~~v~vwd~~~~~~~~~~~---~h~~ 744 (1249)
T 3sfz_A 684 WDSATGKLVHTYD-----EHSEQVNCCHFTNKSNHLLLATGSN-----------DFFLKLWDLNQKECRNTMF---GHTN 744 (1249)
T ss_dssp EETTTCCEEEEEE-----CCSSCEEEEEECSSSSCCEEEEEET-----------TSCEEEEETTSSSEEEEEC---CCSS
T ss_pred EECCCCceEEEEc-----CCCCcEEEEEEecCCCceEEEEEeC-----------CCeEEEEECCCcchhheec---CCCC
Confidence 9998876433210 11111222222 2235555552 2347788888776443321 0111
Q ss_pred CCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcE
Q 009435 191 RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW 229 (535)
Q Consensus 191 r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W 229 (535)
.....+..-++.+++.|+.++ .+.+||+.+..-
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg------~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADG------TLRLWDVRSANE 777 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSS------EEEEEEGGGTEE
T ss_pred CEEEEEEecCCCEEEEEECCC------eEEEEeCCCCcc
Confidence 111112222566777777543 478888876643
No 161
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=90.95 E-value=13 Score=36.48 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE----CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAR 135 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 135 (535)
..+.++|..+.+-...- .+. ...-.+..+ ++.+++.|+.+ ..+.+||+.+.+....- ....
T Consensus 176 ~~v~lwd~~~~~~~~~~-~~h----~~~v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~~~~-----~~h~ 240 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSF-HGH----GADVLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCVQAF-----ETHE 240 (354)
T ss_dssp SEEEEEETTTCCEEEEE-ECC----SSCEEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEEEEE-----CCCS
T ss_pred CcEEEEeCCCCeEEEEE-cCC----CCCeEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe-----cCCC
Confidence 45788898877644321 111 111122222 34677788765 35889998887653321 0001
Q ss_pred CCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee--CCEEEEEecCCC
Q 009435 136 EGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDG 211 (535)
Q Consensus 136 ~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~--~~~lyv~GG~~~ 211 (535)
.....+.. ++.+++.|+.+ ..+.+||+.+..-...-.. ........++.+ ++.+++.|+.++
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D-----------~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDD-----------ATCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYNDY 306 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCeEEEEEeCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECCC
Confidence 11122222 45677777732 3467788876643322211 111112222222 567777777543
Q ss_pred CCcccCceEEEECCCCc
Q 009435 212 HDYYLSDVHILDTDTLT 228 (535)
Q Consensus 212 ~~~~~~~i~~yd~~t~~ 228 (535)
.+.+||+.+..
T Consensus 307 ------~i~vwd~~~~~ 317 (354)
T 2pbi_B 307 ------TINVWDVLKGS 317 (354)
T ss_dssp ------CEEEEETTTCS
T ss_pred ------cEEEEECCCCc
Confidence 48889987654
No 162
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.93 E-value=2.5 Score=49.36 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=96.4
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
.++++..++..+++|+.+ ..+.+||..+.+..... .+ ........+..-+++.++.|+.+ ..+.+|
T Consensus 965 ~~~~~sp~g~~l~~g~~~------g~i~i~d~~~~~~~~~~-~~--h~~~v~~l~~s~dg~~l~s~~~d-----g~i~vw 1030 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDED------GAIKIIELPNNRVFSSG-VG--HKKAVRHIQFTADGKTLISSSED-----SVIQVW 1030 (1249)
T ss_dssp EEEEECTTSSEEEEEETT------SCCEEEETTTTSCEEEC-CC--CSSCCCCEEECSSSSCEEEECSS-----SBEEEE
T ss_pred EEEEEcCCCCEEEEEcCC------CCEEEEEcCCCceeeec-cc--CCCceEEEEECCCCCEEEEEcCC-----CEEEEE
Confidence 344444444456666543 35788888776544321 11 11111112222256667777654 468999
Q ss_pred ECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCcee
Q 009435 116 DTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHT 195 (535)
Q Consensus 116 d~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s 195 (535)
|..+.+...... ....-.+++...+..++.|+. ...+.++|+.+.+-...-. .........
T Consensus 1031 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~---~~~~~v~~~ 1091 (1249)
T 3sfz_A 1031 NWQTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSF-----------DGTVKVWNVITGRIERDFT---CHQGTVLSC 1091 (1249)
T ss_dssp ETTTTEEECCBC-----CSSCEEEEEECSSSEEEEEES-----------SSEEEEEETTTTCCCEEEE---CCSSCCCCE
T ss_pred ECCCCceEEEec-----CCCcEEEEEEcCCCcEEEEEC-----------CCcEEEEECCCCceeEEEc---ccCCcEEEE
Confidence 999988764331 111122333334444555552 2457888887664322211 011111222
Q ss_pred EEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEE--EEECCEEEEEeccCCCCCccCcEEEE
Q 009435 196 CSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST--VAFGKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 196 ~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~--v~~~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
+...++.+++.|+.++ .+.+||..+..- +.. .......-.+ ..-++++++.|+.+. .|.+|
T Consensus 1092 ~~s~d~~~l~s~s~d~------~v~iwd~~~~~~--~~~---l~~h~~~v~~~~~s~dg~~lat~~~dg------~i~vw 1154 (1249)
T 3sfz_A 1092 AISSDATKFSSTSADK------TAKIWSFDLLSP--LHE---LKGHNGCVRCSAFSLDGILLATGDDNG------EIRIW 1154 (1249)
T ss_dssp EECSSSSSCEEECCSS------CCCEECSSSSSC--SBC---CCCCSSCEEEEEECSSSSEEEEEETTS------CCCEE
T ss_pred EECCCCCEEEEEcCCC------cEEEEECCCcce--eee---eccCCCcEEEEEECCCCCEEEEEeCCC------EEEEE
Confidence 2233666777777653 366778765431 111 1111111122 223567778877543 37888
Q ss_pred ecCCCc
Q 009435 274 DVDSGL 279 (535)
Q Consensus 274 d~~~~~ 279 (535)
|+.+..
T Consensus 1155 d~~~~~ 1160 (1249)
T 3sfz_A 1155 NVSDGQ 1160 (1249)
T ss_dssp ESSSSC
T ss_pred ECCCCc
Confidence 887764
No 163
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=90.83 E-value=15 Score=39.75 Aligned_cols=149 Identities=11% Similarity=0.043 Sum_probs=69.2
Q ss_pred eeEEEEECCC-ccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCC-CCce
Q 009435 166 NDLYILNTET-FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL-SPRA 243 (535)
Q Consensus 166 n~v~~yd~~t-~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p-~~R~ 243 (535)
..++++|+.+ .+-..+... . ........++.-+++.+++...+... ...+++.+|+.+.+...+....... ....
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~~pDg~~l~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG-K-EQDIYLARVNWRDPQHLSFQRQSRDQ-KKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC-S-CSSEEEEEEEEEETTEEEEEEEETTS-SEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred eEEEEEECCCCCceEEecCC-C-CcceEEEEEEeCCCCEEEEEEecccC-CeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 4788889887 765555321 0 01111111111344434433322111 2457999999998877664311100 0011
Q ss_pred eeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeee-eecccCCCEEEEEcccCCCCCcc
Q 009435 244 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD-CLDPLKGGVLVFIGGCNKSLEAL 322 (535)
Q Consensus 244 ~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~-~~~~~~~~~l~v~GG~~~~~~~~ 322 (535)
...+..-++++++.+.... ...||.+|+... +..+... ....... .+ ...++.|++.+..+. ...
T Consensus 340 ~~~~~spdg~~~~~~~~~g----~~~l~~~~~~~~-~~~l~~~------~~~v~~~~~~-s~dg~~l~~~~~~~~--~~~ 405 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTG----FQHLYRIDSKGK-AAALTHG------NWSVDELLAV-DEKAGLAYFRAGIES--ARE 405 (741)
T ss_dssp SCCEECTTSCEEEEECTTS----SCEEEEECSSSC-EEESCCS------SSCEEEEEEE-ETTTTEEEEEECSSC--TTC
T ss_pred CceEECCCCeEEEEecCCC----ccEEEEEcCCCC-eeeeeec------ceEEEeEeEE-eCCCCEEEEEEeCCC--Cce
Confidence 1222333566665554322 356899997766 5444321 1111111 12 134556666654322 112
Q ss_pred CcEEEEecc
Q 009435 323 DDMYYLYTG 331 (535)
Q Consensus 323 ~dv~~l~~~ 331 (535)
..+|.+++.
T Consensus 406 ~~l~~~~~~ 414 (741)
T 2ecf_A 406 SQIYAVPLQ 414 (741)
T ss_dssp BEEEEEETT
T ss_pred EEEEEEEcC
Confidence 357877653
No 164
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=90.80 E-value=21 Score=38.77 Aligned_cols=194 Identities=11% Similarity=0.058 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCC--------CCCCcEEEEECCCCeEEeccccCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM--------NPLRDLHILDTSSHTWISPSVRGEG 131 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~--------~~~~~~~~yd~~t~~W~~~~~~g~~ 131 (535)
..++++|..+++...... +..+....+-. +++-++++-.+.. .....++++++.+..-....+. ..
T Consensus 155 ~~i~v~dl~tg~~~~~~~----~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~-~~ 228 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL----KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF-GA 228 (693)
T ss_dssp EEEEEEETTTCSEEEEEE----EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE-SC
T ss_pred EEEEEEECCCCCCCcccc----CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE-ec
Confidence 579999999998765421 11112222333 5543333333221 3346799998877542111111 11
Q ss_pred CC--CCCCeEEEE-ECCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCc--cEEEeccCCCCCCCCCceeEEeeCCEEEE
Q 009435 132 PE--AREGHSAAL-VGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIV 205 (535)
Q Consensus 132 p~--~r~~hs~~~-~~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~~~~~lyv 205 (535)
+. +........ -+++ |++....+ ...++++++|+.+. .|..+... ...........++.||+
T Consensus 229 ~~~~~~~~~~~~~SpDg~~l~~~~~~~--------~~~~~i~~~d~~~~~~~~~~l~~~----~~~~~~~~~~~g~~l~~ 296 (693)
T 3iuj_A 229 IPAQHHRYVGATVTEDDRFLLISAANS--------TSGNRLYVKDLSQENAPLLTVQGD----LDADVSLVDNKGSTLYL 296 (693)
T ss_dssp SGGGCCSEEEEEECTTSCEEEEEEESS--------SSCCEEEEEETTSTTCCCEEEECS----SSSCEEEEEEETTEEEE
T ss_pred CCCCCeEEEEEEEcCCCCEEEEEEccC--------CCCcEEEEEECCCCCCceEEEeCC----CCceEEEEeccCCEEEE
Confidence 11 222222222 2344 44432211 11368999998765 68777521 11111223345789998
Q ss_pred EecCCCCCcccCceEEEECCCC---cEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEE
Q 009435 206 IGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t~---~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (535)
....+. ....|+.+|+.+. .|+.+.+.. .... .....++.|++..-.. -...|+++|+.......
T Consensus 297 ~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~----~~~~-~~s~~g~~lv~~~~~~----g~~~l~~~d~~g~~~~~ 364 (693)
T 3iuj_A 297 LTNRDA---PNRRLVTVDAANPGPAHWRDLIPER----QQVL-TVHSGSGYLFAEYMVD----ATARVEQFDYEGKRVRE 364 (693)
T ss_dssp EECTTC---TTCEEEEEETTSCCGGGCEEEECCC----SSCE-EEEEETTEEEEEEEET----TEEEEEEECTTSCEEEE
T ss_pred EECCCC---CCCEEEEEeCCCCCccccEEEecCC----CCEE-EEEEECCEEEEEEEEC----CeeEEEEEECCCCeeEE
Confidence 876543 2457999998763 488876422 1122 4445567766554322 13468999998765555
Q ss_pred E
Q 009435 283 V 283 (535)
Q Consensus 283 l 283 (535)
+
T Consensus 365 l 365 (693)
T 3iuj_A 365 V 365 (693)
T ss_dssp E
T ss_pred e
Confidence 5
No 165
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=90.72 E-value=13 Score=36.24 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=100.3
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE-ECCEEEEEcCCCCCCCCCcEEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
..+...+ +.+|+.|-. ..+++-+-.-.+|+.+......|. ..+.++. -++.+|+.|.. ..+++
T Consensus 83 ~~i~~~~-~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~------g~v~~ 146 (327)
T 2xbg_A 83 NSVSFQG-NEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNV------GAIYR 146 (327)
T ss_dssp EEEEEET-TEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETT------CCEEE
T ss_pred EEEEecC-CeEEEEECC-------CeEEEECCCCCCceECccccCCCC--CeEEEEEECCCCEEEEeCC------ccEEE
Confidence 3334433 567776421 235543333579998753212221 2233333 36788888742 23555
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECC-CccEEEeccCCCCCCCCC
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNPPSARD 192 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~-t~~W~~~~~~~~~p~~r~ 192 (535)
-+-.-.+|+++.. +.+...++++.. ++.+|++|-. ..+++-+-. -..|+.+.. +....
T Consensus 147 S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------------G~~~~S~d~gG~tW~~~~~----~~~~~ 206 (327)
T 2xbg_A 147 TKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------------GSFYSTWEPGQTAWEPHNR----TTSRR 206 (327)
T ss_dssp ESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------------SSEEEEECTTCSSCEEEEC----CSSSC
T ss_pred EcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------------CcEEEEeCCCCCceeECCC----CCCCc
Confidence 4334568988762 122233444443 3566666531 124444333 578998852 22334
Q ss_pred ceeEEee-CCEEEEEecCCCCCcccCceEEEECC-CCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCc
Q 009435 193 SHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 193 ~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~-t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~d 269 (535)
.+.++.. ++.+|+.+.. ..+++.+.. ..+|+.+... ..+.....+.++.. ++.+|++|+.. .
T Consensus 207 ~~~~~~~~~g~~~~~~~~-------G~~~~s~~D~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~~g-------~ 271 (327)
T 2xbg_A 207 LHNMGFTPDGRLWMIVNG-------GKIAFSDPDNSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGGAG-------A 271 (327)
T ss_dssp EEEEEECTTSCEEEEETT-------TEEEEEETTEEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEESTT-------C
T ss_pred cceeEECCCCCEEEEeCC-------ceEEEecCCCCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeCCC-------e
Confidence 4444433 5678877642 124444333 5679887541 01222223333333 46788887631 2
Q ss_pred EEEEecCCCcEEEEee
Q 009435 270 LYMIDVDSGLWTKVIT 285 (535)
Q Consensus 270 v~~yd~~~~~W~~l~~ 285 (535)
+++-.-.-.+|+.+..
T Consensus 272 i~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 272 LLCSQDGGQTWQQDVD 287 (327)
T ss_dssp EEEESSTTSSCEECGG
T ss_pred EEEeCCCCcccEEcCc
Confidence 5544434578998764
No 166
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=90.70 E-value=3.1 Score=46.04 Aligned_cols=182 Identities=9% Similarity=0.026 Sum_probs=92.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--C--CEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--G--KRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~--~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
+++.++.||.+ ..+.+||..+.++...... .........+.. + +.+++.|+.+ ..+.
T Consensus 20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~D-----------g~I~ 80 (753)
T 3jro_A 20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYD-----------GKVL 80 (753)
T ss_dssp SSCCEEEEETT-----TEEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEETT-----------SCEE
T ss_pred CCCeEEEEECC-----CcEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeCC-----------CeEE
Confidence 35566666654 3588888877777655422 111122222222 2 5677777732 4578
Q ss_pred EEECCCccEEEeccCCCCCCCCCceeEEee-C--CEEEEEecCCCCCcccCceEEEECCCCcE---EEeecCCCCCCCce
Q 009435 170 ILNTETFVWKRATTSGNPPSARDSHTCSSW-K--NKIIVIGGEDGHDYYLSDVHILDTDTLTW---KELNTSGMVLSPRA 243 (535)
Q Consensus 170 ~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~--~~lyv~GG~~~~~~~~~~i~~yd~~t~~W---~~v~~~g~~p~~R~ 243 (535)
++|+.+..|..+...... ...-.++... + +.+++.|+.++ .+.+||+.+..- ..+.. .+. .
T Consensus 81 vwd~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~---~~~--~ 147 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDA---HAI--G 147 (753)
T ss_dssp EEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEEC---CSS--C
T ss_pred EEECCCCcccccccccCC--CCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeec---CCC--c
Confidence 888888887766533111 1111222222 3 67888887653 478888876521 11111 111 1
Q ss_pred eeEEEEE--------------CCEEEEEeccCCCCCccCcEEEEecCCC--cEEEEeeCCCCCCCceeeeeeeecccCC-
Q 009435 244 GHSTVAF--------------GKNLFVFGGFTDSQNLYDDLYMIDVDSG--LWTKVITTGEGPSARFSVAGDCLDPLKG- 306 (535)
Q Consensus 244 ~hs~v~~--------------~~~iyv~GG~~~~~~~~~dv~~yd~~~~--~W~~l~~~~~~p~~r~~~~~~~~~~~~~- 306 (535)
-.++... ++.+++.|+.+. .|.+||+.+. .+..+..... ......+..+ ..+
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~--sp~~ 216 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAW--SPTV 216 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTS------CEEEEEEETTTTEEEEEEEECC---CSSCEEEEEE--CCCC
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCC------eEEEEeccCCcccceeeeeecC---CCCcEEEEEe--ccCC
Confidence 1112221 356777777532 3888888654 3444433211 1111222223 334
Q ss_pred --CEEEEEcccCCC
Q 009435 307 --GVLVFIGGCNKS 318 (535)
Q Consensus 307 --~~l~v~GG~~~~ 318 (535)
+.+++.||.+..
T Consensus 217 ~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 217 LLRSYLASVSQDRT 230 (753)
T ss_dssp SSSEEEEEEESSSC
T ss_pred CCCCEEEEEecCCE
Confidence 788888887654
No 167
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.67 E-value=11 Score=37.10 Aligned_cols=203 Identities=9% Similarity=0.037 Sum_probs=92.5
Q ss_pred CCEEEEECCcCCCC----CCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEE
Q 009435 43 GRFLYVFGGYGKDN----CQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~----~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
+..+++.|...... .....+.+||..+..-.++. ..... .....++.+ ++++++.|+.+ ..+.+||
T Consensus 24 g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~v~vw~ 95 (416)
T 2pm9_A 24 KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--ASLQV-DSKFNDLDWSHNNKIIAGALDN-----GSLELYS 95 (416)
T ss_dssp SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--CCCCC-SSCEEEEEECSSSSCEEEEESS-----SCEEEEC
T ss_pred CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--EEEec-CCceEEEEECCCCCeEEEEccC-----CeEEEee
Confidence 44466777442210 12245888888765432111 01111 112222222 45666777653 3578888
Q ss_pred CCC----C-eEEeccccCCCCCCCCCeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE-----EEeccC
Q 009435 117 TSS----H-TWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-----KRATTS 184 (535)
Q Consensus 117 ~~t----~-~W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W-----~~~~~~ 184 (535)
..+ . .-..+. . ....-.+++.. + +.+++.|+.+ ..+.++|+.+..= ......
T Consensus 96 ~~~~~~~~~~~~~~~---~--h~~~v~~~~~~~~~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 96 TNEANNAINSMARFS---N--HSSSVKTVKFNAKQDNVLASGGNN-----------GEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp CSSTTSCCCEEEECC---C--SSSCCCEEEECSSSTTBEEEECSS-----------SCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred cccccccccchhhcc---C--CccceEEEEEcCCCCCEEEEEcCC-----------CeEEEEECCCCccccccccccccc
Confidence 876 1 222211 1 11111223333 2 5677777732 3477778766530 000000
Q ss_pred CCCCCCCCceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCC--CceeeEEEEEC--CEEEEEe
Q 009435 185 GNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLS--PRAGHSTVAFG--KNLFVFG 258 (535)
Q Consensus 185 ~~~p~~r~~~s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~--~R~~hs~v~~~--~~iyv~G 258 (535)
..........+++.. + +.+++.|+.++ .+.+||+.+.+-...-....... ...-.+++... ..+++.|
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSN------FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 000111111223332 3 56788877543 48899998876544332110000 11122233332 3577777
Q ss_pred ccCCCCCccCcEEEEecCCC
Q 009435 259 GFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 259 G~~~~~~~~~dv~~yd~~~~ 278 (535)
+.... ...+.+||+.+.
T Consensus 234 ~~d~~---~~~i~~~d~~~~ 250 (416)
T 2pm9_A 234 TGSDN---DPSILIWDLRNA 250 (416)
T ss_dssp ECCSS---SCCCCEEETTST
T ss_pred ECCCC---CceEEEEeCCCC
Confidence 65321 125888998874
No 168
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=90.63 E-value=12 Score=35.78 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=55.2
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 95 ~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
+.+++.|+.+ ..+.+||+.+.+-...- .+ ....-.++... ++.+++.|+. ...+.++|
T Consensus 85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~~-~~---~~~~i~~~~~~~~~~~~l~s~~~-----------dg~i~iwd 144 (366)
T 3k26_A 85 HPLLAVAGSR-----GIIRIINPITMQCIKHY-VG---HGNAINELKFHPRDPNLLLSVSK-----------DHALRLWN 144 (366)
T ss_dssp CEEEEEEETT-----CEEEEECTTTCCEEEEE-ES---CCSCEEEEEECSSCTTEEEEEET-----------TSCEEEEE
T ss_pred CCEEEEecCC-----CEEEEEEchhceEeeee-cC---CCCcEEEEEECCCCCCEEEEEeC-----------CCeEEEEE
Confidence 5678888754 36888998876532211 00 11111222222 4567777773 24588889
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCC
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTL 227 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~ 227 (535)
+.+.+-...-.. .......-.+++.. ++..++.|+.++ .+.+||+.+.
T Consensus 145 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~ 193 (366)
T 3k26_A 145 IQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMDH------SLKLWRINSK 193 (366)
T ss_dssp TTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETTS------CEEEEESCSH
T ss_pred eecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCCC------CEEEEECCCC
Confidence 887654433210 00111111222222 466777777543 4888888764
No 169
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=90.58 E-value=14 Score=36.20 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=36.9
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCC--CCceeeEEEE-ECCEEEEEeccCCCCCccCcEEEEecC
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL--SPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVD 276 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p--~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv~~yd~~ 276 (535)
++ +++.|+.+ ..+.+||+.+.+-...-...... ....-.+++. -++.+++.|+... ....|.+||+.
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---SFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET---TEEEEEEEETT
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC---CCceEEEEECC
Confidence 45 77777644 34889999876544332200001 0111122222 2466777776531 11358999998
Q ss_pred CCcE
Q 009435 277 SGLW 280 (535)
Q Consensus 277 ~~~W 280 (535)
+..-
T Consensus 267 ~~~~ 270 (397)
T 1sq9_A 267 FGER 270 (397)
T ss_dssp TCCE
T ss_pred CCcc
Confidence 7653
No 170
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=90.45 E-value=7.5 Score=37.12 Aligned_cols=195 Identities=8% Similarity=-0.001 Sum_probs=88.9
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEc-CCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDT-VNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS 119 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~-~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t 119 (535)
++++.+++.|+.+ ..+.+||. .+.+...+. ..+....-.+++...+.+++.|+.+ ..+.+||+.+
T Consensus 66 ~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~ 131 (342)
T 1yfq_A 66 DNTDLQIYVGTVQ------GEILKVDLIGSPSFQALT---NNEANLGICRICKYGDDKLIAASWD-----GLIEVIDPRN 131 (342)
T ss_dssp ESSSEEEEEEETT------SCEEEECSSSSSSEEECB---SCCCCSCEEEEEEETTTEEEEEETT-----SEEEEECHHH
T ss_pred CCCCcEEEEEcCC------CeEEEEEeccCCceEecc---ccCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcccc
Confidence 3444145556643 46889998 887765543 1001111122222325566666654 3577777653
Q ss_pred C---e----EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCC-cc--EEEeccCCCCCC
Q 009435 120 H---T----WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FV--WKRATTSGNPPS 189 (535)
Q Consensus 120 ~---~----W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t-~~--W~~~~~~~~~p~ 189 (535)
. . ...+. .......-.++....+. ++.|+. ...+.+||+.+ .. ...... +.
T Consensus 132 ~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~-l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~----~~ 192 (342)
T 1yfq_A 132 YGDGVIAVKNLNSN---NTKVKNKIFTMDTNSSR-LIVGMN-----------NSQVQWFRLPLCEDDNGTIEES----GL 192 (342)
T ss_dssp HTTBCEEEEESCSS---SSSSCCCEEEEEECSSE-EEEEES-----------TTEEEEEESSCCTTCCCEEEEC----SC
T ss_pred cccccccccCCeee---EEeeCCceEEEEecCCc-EEEEeC-----------CCeEEEEECCccccccceeeec----CC
Confidence 0 0 11111 12222222334444555 555552 24578888876 32 222221 11
Q ss_pred CCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCC-------cEEEeecCCCCCCC---c-eeeEEEEE-CCEEE
Q 009435 190 ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTL-------TWKELNTSGMVLSP---R-AGHSTVAF-GKNLF 255 (535)
Q Consensus 190 ~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~-------~W~~v~~~g~~p~~---R-~~hs~v~~-~~~iy 255 (535)
.....+++.. ++.+++.|+.++ .+.+||.... .-..+......... . .-.+++.. +++++
T Consensus 193 ~~~i~~i~~~~~~~~~l~~~~~dg------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 266 (342)
T 1yfq_A 193 KYQIRDVALLPKEQEGYACSSIDG------RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp SSCEEEEEECSGGGCEEEEEETTS------EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred CCceeEEEECCCCCCEEEEEecCC------cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEE
Confidence 1112233333 467777777543 2555554332 12222221100000 0 11222222 46667
Q ss_pred EEeccCCCCCccCcEEEEecCCCcE
Q 009435 256 VFGGFTDSQNLYDDLYMIDVDSGLW 280 (535)
Q Consensus 256 v~GG~~~~~~~~~dv~~yd~~~~~W 280 (535)
+.|+.. ..|.+||+.+.+.
T Consensus 267 ~~~~~d------g~i~vwd~~~~~~ 285 (342)
T 1yfq_A 267 YTAGSD------GIISCWNLQTRKK 285 (342)
T ss_dssp EEEETT------SCEEEEETTTTEE
T ss_pred EEecCC------ceEEEEcCccHhH
Confidence 777753 2489999987754
No 171
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=90.44 E-value=5 Score=38.31 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
++++++.|+.++ .+..++............ .............+..++.|+.+ ..+.++|.
T Consensus 97 dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~s~d-----------~~~~~~d~ 157 (340)
T 4aow_A 97 DGQFALSGSWDG-----TLRLWDLTTGTTTRRFVG---HTKDVLSVAFSSDNRQIVSGSRD-----------KTIKLWNT 157 (340)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEEC---CSSCEEEEEECTTSSCEEEEETT-----------SCEEEECT
T ss_pred CCCEEEEEcccc-----cceEEeecccceeeeecC---CCCceeEEEEeecCccceeecCC-----------CeEEEEEe
Confidence 566777777543 477788777665433311 11111111112234556666632 23556666
Q ss_pred CCccEEEeccCCCCCCCCCceeEEee----CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE
Q 009435 174 ETFVWKRATTSGNPPSARDSHTCSSW----KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (535)
Q Consensus 174 ~t~~W~~~~~~~~~p~~r~~~s~~~~----~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~ 249 (535)
....-......+ . ......+.+ .+.+++.|+.+. .+.+||+.+.+....-. .... .-.+++.
T Consensus 158 ~~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~~~s~~~d~------~i~i~d~~~~~~~~~~~---~h~~-~v~~~~~ 223 (340)
T 4aow_A 158 LGVCKYTVQDES--H--SEWVSCVRFSPNSSNPIIVSCGWDK------LVKVWNLANCKLKTNHI---GHTG-YLNTVTV 223 (340)
T ss_dssp TSCEEEEECSSS--C--SSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTTEEEEEEC---CCSS-CEEEEEE
T ss_pred CCCceEEEEecc--c--cCcccceEEccCCCCcEEEEEcCCC------EEEEEECCCCceeeEec---CCCC-cEEEEEE
Confidence 544333222111 0 111112211 234666666543 37889998876544322 1111 1122222
Q ss_pred -ECCEEEEEeccCCCCCccCcEEEEecCCCcE
Q 009435 250 -FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 280 (535)
Q Consensus 250 -~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W 280 (535)
-++++++.|+.+ ..+.+||+.+..-
T Consensus 224 s~~~~~l~s~s~D------g~i~iwd~~~~~~ 249 (340)
T 4aow_A 224 SPDGSLCASGGKD------GQAMLWDLNEGKH 249 (340)
T ss_dssp CTTSSEEEEEETT------CEEEEEETTTTEE
T ss_pred CCCCCEEEEEeCC------CeEEEEEeccCce
Confidence 246677777754 2488899887653
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=90.24 E-value=14 Score=35.76 Aligned_cols=236 Identities=13% Similarity=0.065 Sum_probs=119.6
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccc---cCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSV---RGEGPE 133 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~---~g~~p~ 133 (535)
+.++++|+.+.+.......+... .-++++.- +++||+.... ...+.+||+.... -..+.. .+....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~---~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~ 140 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFY---LPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQN 140 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCS---SEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred CcEEEEECCCCeEEeccCCCccC---CceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence 36999999877765432111111 11233332 5679987643 2568899986541 111111 111111
Q ss_pred CCCC-eEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCC----CCC-CCceeEEee-C-CEE
Q 009435 134 AREG-HSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP----PSA-RDSHTCSSW-K-NKI 203 (535)
Q Consensus 134 ~r~~-hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~----p~~-r~~~s~~~~-~-~~l 203 (535)
.... ..+++. ++.|||..++. .+.|.+||.....-..+...+.. +.. ..-+.+++. + +.|
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL 210 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE
Confidence 1112 233443 57899987521 35688898655444444322211 111 112334443 3 799
Q ss_pred EEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCC-CCccCcEEEEecCCCcEEE
Q 009435 204 IVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS-QNLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 204 yv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~-~~~~~dv~~yd~~~~~W~~ 282 (535)
||....+ +.|.+||+.+.+....-.. ......-..++...+.+|+..|..-- ......++++|+.++....
T Consensus 211 ~v~d~~~------~~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 211 CVADREN------GRIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp EEEETTT------TEEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred EEEECCC------CEEEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence 9986532 4589999986665543321 11122222344445777777775321 1223579999988887655
Q ss_pred EeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCCCccCcEEEEecc
Q 009435 283 VITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 331 (535)
Q Consensus 283 l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l~~~ 331 (535)
.-... +.......+.++ ..++.|||....+. .++.++..
T Consensus 283 ~~~~~--~~~~~~p~~ia~--~~dG~lyvad~~~~------~I~~~~~~ 321 (329)
T 3fvz_A 283 VFKPV--RKHFDMPHDIVA--SEDGTVYIGDAHTN------TVWKFTLT 321 (329)
T ss_dssp EECCS--SSCCSSEEEEEE--CTTSEEEEEESSSC------CEEEEEEE
T ss_pred EEcCC--CCccCCeeEEEE--CCCCCEEEEECCCC------EEEEEeCC
Confidence 43211 111111223333 34678988764443 36666543
No 173
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=90.19 E-value=14 Score=35.82 Aligned_cols=76 Identities=16% Similarity=0.066 Sum_probs=37.9
Q ss_pred CC-EEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceee-EEEEE-CC-EEEEEeccCCCCCccCcEEEEec
Q 009435 200 KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH-STVAF-GK-NLFVFGGFTDSQNLYDDLYMIDV 275 (535)
Q Consensus 200 ~~-~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~h-s~v~~-~~-~iyv~GG~~~~~~~~~dv~~yd~ 275 (535)
++ .+|+.+.. .+.+.+||+.+.++..+......+...... .++.. ++ .||+..... .+.+.+|++
T Consensus 221 dg~~l~v~~~~------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-----~~~i~v~~~ 289 (361)
T 3scy_A 221 DGKFAYLINEI------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-----ADGVAIFKV 289 (361)
T ss_dssp TSSEEEEEETT------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-----SCEEEEEEE
T ss_pred CCCEEEEEcCC------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-----CCEEEEEEE
Confidence 44 56666432 245888888887776554322122221222 22222 34 455544320 133666666
Q ss_pred --CCCcEEEEeeC
Q 009435 276 --DSGLWTKVITT 286 (535)
Q Consensus 276 --~~~~W~~l~~~ 286 (535)
.++.++.+...
T Consensus 290 ~~~~g~~~~~~~~ 302 (361)
T 3scy_A 290 DETNGTLTKVGYQ 302 (361)
T ss_dssp CTTTCCEEEEEEE
T ss_pred cCCCCcEEEeeEe
Confidence 46777766543
No 174
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=90.07 E-value=12 Score=34.89 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=37.2
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
++. ++.|+.++ .+.+||+.+.+-...-. .. ...-.+++...+..++.|+.. ..+.+||+.+..
T Consensus 195 ~~~-~~~~~~dg------~i~i~d~~~~~~~~~~~---~~-~~~i~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~ 257 (313)
T 3odt_A 195 DGH-FISCSNDG------LIKLVDMHTGDVLRTYE---GH-ESFVYCIKLLPNGDIVSCGED------RTVRIWSKENGS 257 (313)
T ss_dssp TTE-EEEEETTS------EEEEEETTTCCEEEEEE---CC-SSCEEEEEECTTSCEEEEETT------SEEEEECTTTCC
T ss_pred CCe-EEEccCCC------eEEEEECCchhhhhhhh---cC-CceEEEEEEecCCCEEEEecC------CEEEEEECCCCc
Confidence 666 66666543 48899998765332211 01 111222333333245566643 349999998887
Q ss_pred EEEEee
Q 009435 280 WTKVIT 285 (535)
Q Consensus 280 W~~l~~ 285 (535)
....-.
T Consensus 258 ~~~~~~ 263 (313)
T 3odt_A 258 LKQVIT 263 (313)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 554433
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=90.07 E-value=13 Score=35.09 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=96.0
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeecc-CCCCCCCCceEEEEECCEEEEE----cCCC------C-
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIK-GSPPTPRDSHSCTTVGENLYVF----GGTD------G- 105 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~-g~~P~~R~~hs~~~~~~~Iyv~----GG~~------~- 105 (535)
+++..++.+|+.... ...+++||+.+++...+... ...+..+....++.-++++|+. |... .
T Consensus 74 l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 74 HCLNKQGHLIACSHG------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp EEECTTCCEEEEETT------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred eeECCCCcEEEEecC------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence 344333446665321 14689999988887765311 1111112222333336788886 4311 0
Q ss_pred -CCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECC-CccE-EEe
Q 009435 106 -MNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVW-KRA 181 (535)
Q Consensus 106 -~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~-t~~W-~~~ 181 (535)
......++++|+. ++...+.. ....+ .+++.. ++++++.... .+.+++||+. +.+. ...
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s~dg~~lv~~~~-----------~~~i~~~~~~~~g~~~~~~ 210 (296)
T 3e5z_A 148 MELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFLPSGNLLVSDTG-----------DNATHRYCLNARGETEYQG 210 (296)
T ss_dssp CCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEECTTSCEEEEETT-----------TTEEEEEEECSSSCEEEEE
T ss_pred ccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEECCCCCEEEEeCC-----------CCeEEEEEECCCCcCcCCC
Confidence 1123479999987 55444321 11111 233332 4555554431 2468888876 4555 221
Q ss_pred ccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--C-CEEEEE
Q 009435 182 TTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--G-KNLFVF 257 (535)
Q Consensus 182 ~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~-~~iyv~ 257 (535)
... ...... -..++. -++.|||..+ +.+.+||+.......+.. +.. -.+++.- + +.||+.
T Consensus 211 ~~~-~~~~~~-p~~i~~d~~G~l~v~~~--------~~v~~~~~~g~~~~~~~~----~~~--~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 211 VHF-TVEPGK-TDGLRVDAGGLIWASAG--------DGVHVLTPDGDELGRVLT----PQT--TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp EEE-CCSSSC-CCSEEEBTTSCEEEEET--------TEEEEECTTSCEEEEEEC----SSC--CCEEEEESTTSCEEEEE
T ss_pred eEe-eCCCCC-CCeEEECCCCCEEEEcC--------CeEEEECCCCCEEEEEEC----CCC--ceeEEEECCCCCEEEEE
Confidence 111 111111 112333 3678888761 358999998666555543 222 1122221 2 356665
Q ss_pred eccCCCCCccCcEEEEecCCCc
Q 009435 258 GGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
.. +.+|+|++++..
T Consensus 275 t~--------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 275 VS--------TEFWSIETNVRG 288 (296)
T ss_dssp ET--------TEEEEEECSCCB
T ss_pred cC--------CeEEEEEccccc
Confidence 42 248999988765
No 176
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=89.92 E-value=24 Score=37.98 Aligned_cols=153 Identities=14% Similarity=0.014 Sum_probs=74.4
Q ss_pred eeeEEEEECCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCC-cEEEeecCCCCC-CC
Q 009435 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVL-SP 241 (535)
Q Consensus 165 ~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~W~~v~~~g~~p-~~ 241 (535)
...++++|+.+.+-..+... .........++. -+++.++++..+... ....++.+|+.+. .+..+....... ..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred eeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 46799999998876655421 011111112222 255544454433221 3457999999988 776654311100 00
Q ss_pred ceeeEEEEE--CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCCC
Q 009435 242 RAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL 319 (535)
Q Consensus 242 R~~hs~v~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~~ 319 (535)
........- ++++++.+.... ...+|.+|........+... ....... ..+ ...++.|++.+..+..
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~---~~~v~~~--~~~-spdg~~l~~~~~~~~~- 379 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKG---EWEVTNF--AGF-DPKGTRLYFESTEASP- 379 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCS---SSCEEEE--EEE-CTTSSEEEEEESSSCT-
T ss_pred ccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCC---CeEEEee--eEE-cCCCCEEEEEecCCCC-
Confidence 001112233 667655554321 45688998777666665321 1111110 122 1344566666543221
Q ss_pred CccCcEEEEeccc
Q 009435 320 EALDDMYYLYTGL 332 (535)
Q Consensus 320 ~~~~dv~~l~~~~ 332 (535)
....+|.++...
T Consensus 380 -~~~~l~~~d~~~ 391 (706)
T 2z3z_A 380 -LERHFYCIDIKG 391 (706)
T ss_dssp -TCBEEEEEETTC
T ss_pred -ceEEEEEEEcCC
Confidence 123678887654
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=89.70 E-value=2.6 Score=40.74 Aligned_cols=155 Identities=10% Similarity=0.033 Sum_probs=81.6
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
+++||+.+..+ ..+++||+.+.+....... ....-.+++.. ++++|+...... .....+++||
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~~-------~~~~~i~~~d 118 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGDF-------KSTGGIFAAT 118 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTTS-------SSCCEEEEEC
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCCC-------CCCceEEEEe
Confidence 56788876532 4799999998887654311 11122333333 467888754210 0124689999
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~- 250 (535)
+.+.....+... ......-..++.. ++.+|+.............++++|+++.+...+... . . ....++..
T Consensus 119 ~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~--~-~~~~i~~~~ 191 (333)
T 2dg1_A 119 ENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I--S-VANGIALST 191 (333)
T ss_dssp TTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E--S-SEEEEEECT
T ss_pred CCCCEEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C--C-cccceEECC
Confidence 988776533211 1111112222322 677887543221111235699999988776655321 0 1 11223322
Q ss_pred CC-EEEEEeccCCCCCccCcEEEEecCC
Q 009435 251 GK-NLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 251 ~~-~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
++ .+|+.... .+.|++||+.+
T Consensus 192 dg~~l~v~~~~------~~~i~~~d~~~ 213 (333)
T 2dg1_A 192 DEKVLWVTETT------ANRLHRIALED 213 (333)
T ss_dssp TSSEEEEEEGG------GTEEEEEEECT
T ss_pred CCCEEEEEeCC------CCeEEEEEecC
Confidence 33 57776532 24589999854
No 178
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=89.52 E-value=15 Score=34.98 Aligned_cols=227 Identities=11% Similarity=0.001 Sum_probs=104.1
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
++....++.+++.|+.+ ..+.++|..+..-...- .+. ..........-++++++.|+.+ ..+.+||
T Consensus 18 ~~~fsp~~~~l~s~~~d------g~v~lWd~~~~~~~~~~-~~~--~~~v~~~~~~~~~~~l~s~s~d-----~~i~vwd 83 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYS------GRVELWNYETQVEVRSI-QVT--ETPVRAGKFIARKNWIIVGSDD-----FRIRVFN 83 (304)
T ss_dssp EEEECSSSSEEEEEETT------SEEEEEETTTTEEEEEE-ECC--SSCEEEEEEEGGGTEEEEEETT-----SEEEEEE
T ss_pred EEEECCCCCEEEEEcCC------CcEEEEECCCCceeEEe-ecc--CCcEEEEEEeCCCCEEEEECCC-----CEEEEEE
Confidence 34443334466666643 45888898887644321 111 1111111222255667777654 4688899
Q ss_pred CCCCeEEe-ccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 117 TSSHTWIS-PSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 117 ~~t~~W~~-~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
..+.+-.. +. + ....-.+++.. ++.+++.|+.+ ..+.++|+.+..=......+ -...-.
T Consensus 84 ~~~~~~~~~~~--~---h~~~v~~~~~~~~~~~l~sgs~D-----------~~v~lWd~~~~~~~~~~~~~---h~~~v~ 144 (304)
T 2ynn_A 84 YNTGEKVVDFE--A---HPDYIRSIAVHPTKPYVLSGSDD-----------LTVKLWNWENNWALEQTFEG---HEHFVM 144 (304)
T ss_dssp TTTCCEEEEEE--C---CSSCEEEEEECSSSSEEEEEETT-----------SCEEEEEGGGTTEEEEEECC---CCSCEE
T ss_pred CCCCcEEEEEe--C---CCCcEEEEEEcCCCCEEEEECCC-----------CeEEEEECCCCcchhhhhcc---cCCcEE
Confidence 88765322 11 0 11111222222 35566677632 34667777654211111010 011112
Q ss_pred eEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE---CCEEEEEeccCCCCCccCc
Q 009435 195 TCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDD 269 (535)
Q Consensus 195 s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~---~~~iyv~GG~~~~~~~~~d 269 (535)
+++.. ++.+++.|+.++ .+.+||+.+..-..... ....+....+... ++.+++.|+.. ..
T Consensus 145 ~v~~~p~~~~~l~sgs~D~------~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~s~D------~~ 209 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDD------LT 209 (304)
T ss_dssp EEEECTTCTTEEEEEETTS------EEEEEETTCSSCSEEEE---CCCTTCEEEEEECCSTTCCEEEEEETT------SE
T ss_pred EEEECCCCCCEEEEEeCCC------eEEEEECCCCCccceec---cCCcCcEEEEEEEEcCCCCEEEEEcCC------Ce
Confidence 22222 346777887653 37788876543111111 0111111112211 34566666653 34
Q ss_pred EEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCCC
Q 009435 270 LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 318 (535)
Q Consensus 270 v~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 318 (535)
|.+||+.+..-...-.. .........+ ..++.+++.|+.+..
T Consensus 210 i~iWd~~~~~~~~~~~~-----h~~~v~~~~~--~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEG-----HMSNVSFAVF--HPTLPIIISGSEDGT 251 (304)
T ss_dssp EEEEETTTTEEEEEEEC-----CSSCEEEEEE--CSSSSEEEEEETTSC
T ss_pred EEEEeCCCCccceeeCC-----CCCCEEEEEE--CCCCCEEEEEcCCCe
Confidence 88999987653222111 1111222223 345667777876654
No 179
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=89.18 E-value=2 Score=43.73 Aligned_cols=148 Identities=10% Similarity=0.050 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~y 171 (535)
++.+++.|+.++ .+.+||+.+..-..... .......-.+++.. ++.+++-|+.+ ..|.++
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~--~~gH~~~V~~l~f~p~~~~~l~s~s~D-----------~~v~iw 192 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIK--GIGAGGSITGLKFNPLNTNQFYASSME-----------GTTRLQ 192 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEEC--CCSSSCCCCEEEECSSCTTEEEEECSS-----------SCEEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEE--ccCCCCCEEEEEEeCCCCCEEEEEeCC-----------CEEEEe
Confidence 456778887654 58888887654322110 01111111233332 45666777732 346778
Q ss_pred ECCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE
Q 009435 172 NTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF 250 (535)
Q Consensus 172 d~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~ 250 (535)
|+.+.....+....... ....++.. .++.+++.|+.++ .+.+||+.+..-..+.. ....-..+.+
T Consensus 193 d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~~------h~~~v~~v~~ 258 (435)
T 4e54_B 193 DFKGNILRVFASSDTIN--IWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLRM------HKKKVTHVAL 258 (435)
T ss_dssp ETTSCEEEEEECCSSCS--CCCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSBC------CSSCEEEEEE
T ss_pred eccCCceeEEeccCCCC--ccEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEec------ccceEEeeee
Confidence 88877666554221111 11122222 2667788887543 47888886543221111 1111122222
Q ss_pred ---CCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 251 ---GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 251 ---~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
++.+++.|+.+. .|.+||+.+..
T Consensus 259 ~p~~~~~~~s~s~d~------~v~iwd~~~~~ 284 (435)
T 4e54_B 259 NPCCDWFLATASVDQ------TVKIWDLRQVR 284 (435)
T ss_dssp CTTCSSEEEEEETTS------BCCEEETTTCC
T ss_pred cCCCceEEEEecCcc------eeeEEeccccc
Confidence 344677776532 36788876643
No 180
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=89.18 E-value=16 Score=35.12 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEEC---CEEEEEcCCCCCCCCCCceeeeeEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG---KRLFIFGGCGKSSNTNDEVYYNDLYI 170 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~---~~lyv~GG~~~~~~~~~~~~~n~v~~ 170 (535)
++.+++.|+.++ .+.++|..+..|..+........ .-.++.... +.+++.|+.+ ..+.+
T Consensus 164 ~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~D-----------~~v~i 225 (330)
T 2hes_X 164 SEALLASSSYDD-----TVRIWKDYDDDWECVAVLNGHEG--TVWSSDFDKTEGVFRLCSGSDD-----------STVRV 225 (330)
T ss_dssp SSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSS--CEEEEEECCSSSSCEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccCCCC--cEEEEEecCCCCeeEEEEEeCC-----------CeEEE
Confidence 456777777653 47778877777765442211110 111222222 2355556632 22444
Q ss_pred EECCC------ccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCcee
Q 009435 171 LNTET------FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 244 (535)
Q Consensus 171 yd~~t------~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~ 244 (535)
+|+.+ ..|........ .....-.+++...+.+++.||.++ .+.+||..+..|..+...........-
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGADG------VLAVYEEVDGEWKVFAKRALCHGVYEI 298 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETTS------CEEEEEEETTEEEEEEEESCTTTTSCE
T ss_pred EEecCCCccccceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCCC------EEEEEEcCCCceEEEeccccccccceE
Confidence 44432 24554432211 011122233333445677777543 378888888888765431000111011
Q ss_pred eEEEEE---CCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 245 HSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 245 hs~v~~---~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
.++... ++++++.||.+. .|.+||+++
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg------~v~~W~~~~ 328 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDG------IVNFWSLEK 328 (330)
T ss_dssp EEEEEC-----CCEEEEETTS------EEEEEEC--
T ss_pred EEEEEecCCCceEEEEecCCC------cEEEEEecc
Confidence 122221 456777777542 377777654
No 181
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=89.13 E-value=1.5 Score=43.23 Aligned_cols=151 Identities=8% Similarity=0.053 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~y 171 (535)
++++++.|+.+ ..+.+||+.+..|...... .........+.. ++++++.|+.+ ..+.++
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~d-----------~~v~vw 82 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTF---SDHDKIVTCVDWAPKSNRIVTCSQD-----------RNAYVY 82 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCB---CCCSSCEEEEEECTTTCCEEEEETT-----------SSEEEC
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEE---ecCCceEEEEEEeCCCCEEEEEeCC-----------CeEEEE
Confidence 45666777654 3577888888887665532 211122222222 35667777632 347777
Q ss_pred ECCCcc-EEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCc-EEEeecCCCCCCCceeeEEE
Q 009435 172 NTETFV-WKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTV 248 (535)
Q Consensus 172 d~~t~~-W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~-W~~v~~~g~~p~~R~~hs~v 248 (535)
|+.+.. |........ ....-.+++.. ++.+++.|+.++ .+.+||+.+.+ |..+.... .+....-.++.
T Consensus 83 d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~ 153 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLR--LNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLK-RPLRSTILSLD 153 (377)
T ss_dssp ------CCCCEEECCC--CSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEEC-SSCCSCEEEEE
T ss_pred EcCCCCceeeeeEecc--cCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEee-cccCCCeEEEE
Confidence 877665 433321111 11111222222 566777777543 37788887654 32222100 11111122233
Q ss_pred EE-CCEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 249 AF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 249 ~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
.. ++++++.|+.+ ..+.+||+.+.
T Consensus 154 ~~~~~~~l~~~~~d------~~i~iwd~~~~ 178 (377)
T 3dwl_C 154 WHPNNVLLAAGCAD------RKAYVLSAYVR 178 (377)
T ss_dssp ECTTSSEEEEEESS------SCEEEEEECCS
T ss_pred EcCCCCEEEEEeCC------CEEEEEEEEec
Confidence 22 45677777754 24888887543
No 182
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=88.97 E-value=14 Score=38.32 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
++++|+|-| +..|+||..+++.....-. .+| .. -++....+++|+|-| +..++||.
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~-gi~--~i-DAA~~~~g~~YfFkG-------------~~y~rfd~ 213 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWP-AVG--NC-TSALRWLGRYYCFQG-------------NQFLRFNP 213 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCT-TSC--CC-SEEEEETTEEEEEET-------------TEEEEECT
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCC-CCC--cc-chheeeCCceEEEEC-------------CEEEEEcC
Confidence 678899987 5789999998876532211 122 22 344555789999988 45677876
Q ss_pred CC
Q 009435 174 ET 175 (535)
Q Consensus 174 ~t 175 (535)
.+
T Consensus 214 ~~ 215 (460)
T 1qhu_A 214 VS 215 (460)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 183
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=88.76 E-value=24 Score=36.53 Aligned_cols=174 Identities=9% Similarity=0.065 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
+++.++.|+.+ ..+.+||.....-..+. ... .. -.+++. .++++++.++.+ ..+.+||
T Consensus 396 dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~---~~~-~~-v~~~~~s~d~~~l~~~~~d-----------~~v~~w~ 454 (577)
T 2ymu_A 396 DGQTIASASDD-----KTVKLWNRNGQLLQTLT---GHS-SS-VWGVAFSPDDQTIASASDD-----------KTVKLWN 454 (577)
T ss_dssp TSSCEEEEETT-----SEEEEECTTCCEEEEEE---CCS-SC-EEEEEECTTSSEEEEEETT-----------SEEEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCEEEEec---CCC-CC-eEEEEECCCCCEEEEEcCC-----------CEEEEEE
Confidence 45666666643 35677775443332222 111 11 112222 245666666631 3466778
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEEC
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG 251 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~ 251 (535)
.....-..+... .. .-.+++. .++++++.|+.++ .+.+||.....-..+.. ........+..-+
T Consensus 455 ~~~~~~~~~~~~----~~-~v~~~~~spd~~~las~~~d~------~i~iw~~~~~~~~~~~~----h~~~v~~l~~s~d 519 (577)
T 2ymu_A 455 RNGQLLQTLTGH----SS-SVRGVAFSPDGQTIASASDDK------TVKLWNRNGQLLQTLTG----HSSSVRGVAFSPD 519 (577)
T ss_dssp TTSCEEEEEECC----SS-CEEEEEECTTSCEEEEEETTS------EEEEEETTSCEEEEEEC----CSSCEEEEEECTT
T ss_pred CCCCEEEEEcCC----CC-CEEEEEEcCCCCEEEEEeCCC------EEEEEcCCCCEEEEEeC----CCCCEEEEEEcCC
Confidence 765544444311 11 1122222 2677777777543 37778865443333332 1111111122235
Q ss_pred CEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 252 KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 252 ~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
+++++.|+.+ ..|.+||........+... .....+..+ ..++..++.||.+.
T Consensus 520 g~~l~s~~~d------g~v~lwd~~~~~~~~~~~h------~~~v~~~~f--s~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 520 GQTIASASDD------KTVKLWNRNGQLLQTLTGH------SSSVWGVAF--SPDGQTIASASSDK 571 (577)
T ss_dssp SSCEEEEETT------SEEEEECTTSCEEEEEECC------SSCEEEEEE--CTTSSCEEEEETTS
T ss_pred CCEEEEEECc------CEEEEEeCCCCEEEEEcCC------CCCEEEEEE--cCCCCEEEEEeCCC
Confidence 6667777653 2388888755443333221 111222223 34666667777654
No 184
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=88.44 E-value=18 Score=39.64 Aligned_cols=197 Identities=12% Similarity=0.060 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCC---------CCCCcEEEEECCCCeEEeccccCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM---------NPLRDLHILDTSSHTWISPSVRGE 130 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~---------~~~~~~~~yd~~t~~W~~~~~~g~ 130 (535)
..++++|..+++....... .... .+.+...++-++++..+.. .....++++++.+..-....+...
T Consensus 189 ~~i~v~dl~tg~~~~~~~~----~~~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADELK----WVKF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp EEEEEEETTTCCEEEEEEE----EEES-CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEEECCCCCCCCccCC----Ccee-ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc
Confidence 4699999999987653211 0010 1111212243333333222 124578899987654210011111
Q ss_pred CCCCCCCeEEEE-ECCE-EEEEcCCCCCCCCCCceeeeeEEEEECCCc--c-EEEeccCCCCCCCCCceeEEeeCCEEEE
Q 009435 131 GPEAREGHSAAL-VGKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETF--V-WKRATTSGNPPSARDSHTCSSWKNKIIV 205 (535)
Q Consensus 131 ~p~~r~~hs~~~-~~~~-lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~--~-W~~~~~~~~~p~~r~~~s~~~~~~~lyv 205 (535)
...+........ -+++ |++..... ....++++++|+.+. . |..+.... .. ........++.||+
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~-------~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~-~~~~~~~dg~~l~~ 332 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEG-------TDPVNTVHVARVTNGKIGPVTALIPDL---KA-QWDFVDGVGDQLWF 332 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECT-------TCSCCEEEEEEEETTEECCCEEEECSS---SS-CEEEEEEETTEEEE
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEcc-------CCCcceEEEEECCCCCCcccEEecCCC---Cc-eEEEEeccCCEEEE
Confidence 112222222222 2444 44443311 112568999998876 6 88876321 11 11222334677877
Q ss_pred EecCCCCCcccCceEEEECCC--CcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 206 IGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 206 ~GG~~~~~~~~~~i~~yd~~t--~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
....+. ....|+.+|+.+ ..|+.+-... ......+...++.+++...... ...||++|+....-..+
T Consensus 333 ~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 333 VSGDGA---PLKKIVRVDLSGSTPRFDTVVPES----KDNLESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EECTTC---TTCEEEEEECSSSSCEEEEEECCC----SSEEEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEEC
T ss_pred EECCCC---CCCEEEEEeCCCCccccEEEecCC----CCeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeec
Confidence 754422 235699999988 5798886421 1112223344778777765432 35689999765543333
No 185
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=88.39 E-value=15 Score=33.66 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=81.4
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEe--cccc-CCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCcee
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS--PSVR-GEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVY 164 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~--~~~~-g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~ 164 (535)
+++.+.+++|+|=| ..+|+++.....+.. +... ..+|. ...++.... ++++|+|-|
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iDAa~~~~~~~~iyfFkG------------ 87 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN-RIDAAYEHPSHDLIFIFRG------------ 87 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCCEEEEETTTTEEEEEET------------
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCC-CccEEEEeccCCcEEEEcc------------
Confidence 34457899999977 457777765433321 1110 12332 223222222 589999988
Q ss_pred eeeEEEEECCCcc---EEEeccCCCCCC--CCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEE-----ee
Q 009435 165 YNDLYILNTETFV---WKRATTSGNPPS--ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LN 233 (535)
Q Consensus 165 ~n~v~~yd~~t~~---W~~~~~~~~~p~--~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----v~ 233 (535)
+.+|+|+-.+-. =+.+...| .|. .....+.... ++++|+|-| +..|+||..+++-.. +.
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~~d~gyPr~i~ 157 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMDKDYPRLIE 157 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEECSSCCCBHH
T ss_pred -CEEEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCccccCCCCccHH
Confidence 346777633211 12233222 221 1222222222 489999976 458999987653210 00
Q ss_pred -cCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEE
Q 009435 234 -TSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 234 -~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (535)
....+| ..-.++...++++|+|-|. ..|+||..+.+-..
T Consensus 158 ~~~~Gip--~~iDaAf~~~g~~YfFkg~--------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 158 EDFPGIG--DKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HHSTTSC--SCCSEEEEETTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred HcCCCCC--CCccEEEEcCCcEEEEECC--------EEEEEeCCccEEec
Confidence 000122 2233444568999999774 38999988766443
No 186
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=88.29 E-value=16 Score=33.98 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=90.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCC-CCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA-REGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~-r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~ 170 (535)
++++|+.... ...+.+||+...........+..+.. ..-+.++.. +++|||.+.. ....+.+
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----------~~~~i~~ 104 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----------PTHQIQI 104 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----------GGCEEEE
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----------CCCEEEE
Confidence 4567776532 24588888775443333321111111 122344442 5788887641 0246888
Q ss_pred EECCCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE
Q 009435 171 LNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA 249 (535)
Q Consensus 171 yd~~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~ 249 (535)
||........+... ....-+.+++. ++++|+.... .+.+.+||+.......+...+... .-..++.
T Consensus 105 ~d~~g~~~~~~~~~----~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~~---~p~~i~~ 171 (286)
T 1q7f_A 105 YNQYGQFVRKFGAT----ILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLE---FPNGVVV 171 (286)
T ss_dssp ECTTSCEEEEECTT----TCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCS---SEEEEEE
T ss_pred ECCCCcEEEEecCc----cCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCccC---CcEEEEE
Confidence 98655444444211 11112333333 5678887543 245899998766555554311111 1122332
Q ss_pred -ECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEccc
Q 009435 250 -FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 315 (535)
Q Consensus 250 -~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~ 315 (535)
-++++|+.... .+.|++||+.......+...+... ...+.++ ..++.||+....
T Consensus 172 ~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g~~~----~p~~i~~--d~~G~l~v~~~~ 226 (286)
T 1q7f_A 172 NDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGITN----YPIGVGI--NSNGEILIADNH 226 (286)
T ss_dssp CSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTTSC----SEEEEEE--CTTCCEEEEECS
T ss_pred CCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCCccC----CCcEEEE--CCCCCEEEEeCC
Confidence 24788887653 245999998765444443221111 1123333 245677776543
No 187
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=88.26 E-value=10 Score=36.33 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=37.5
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEee-ccCCCCCCCCceEEEEE----CCEEEEEcCCCCCCCCCcE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-IKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~-~~g~~P~~R~~hs~~~~----~~~Iyv~GG~~~~~~~~~~ 112 (535)
+.+..++..++.|+.+ ..+.+||..++....+. ..+. ...-.++.. ++.+++.|+.+ ..+
T Consensus 19 v~~s~~g~~lasgs~D------~~v~lwd~~~~~~~~~~~l~gH----~~~V~~v~~~~~~~~~~l~s~s~D-----~~v 83 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSD------RSVKIFDVRNGGQILIADLRGH----EGPVWQVAWAHPMYGNILASCSYD-----RKV 83 (316)
T ss_dssp EEECGGGCEEEEEETT------TEEEEEEEETTEEEEEEEEECC----SSCEEEEEECCGGGSSCEEEEETT-----SCE
T ss_pred eeEcCCCCEEEEEeCC------CeEEEEEecCCCcEEEEEEcCC----CccEEEEEeCCCCCCCEEEEEECC-----CEE
Confidence 3343333466667643 35778887776543221 1111 111122222 25677777765 357
Q ss_pred EEEECCCCeEEe
Q 009435 113 HILDTSSHTWIS 124 (535)
Q Consensus 113 ~~yd~~t~~W~~ 124 (535)
.++|+.+..|..
T Consensus 84 ~iWd~~~~~~~~ 95 (316)
T 3bg1_A 84 IIWREENGTWEK 95 (316)
T ss_dssp EEECCSSSCCCE
T ss_pred EEEECCCCcceE
Confidence 888888776643
No 188
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=88.18 E-value=18 Score=34.32 Aligned_cols=151 Identities=13% Similarity=-0.008 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
++.||+..-. -..+++||+.+........ + .+. .+++.. ++++|+..+ +.+++||
T Consensus 24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----~-~~~-~~i~~~~dG~l~v~~~-------------~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM----D-APV-SSVALRQSGGYVATIG-------------TKFCALN 79 (297)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEEC----S-SCE-EEEEEBTTSSEEEEET-------------TEEEEEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEeC----C-Cce-EEEEECCCCCEEEEEC-------------CeEEEEE
Confidence 4678887643 2578999998876544331 1 111 122322 466666432 4689999
Q ss_pred CCCccEEEeccCCC-CCCCCCceeEEeeCCEEEEEecCCCC-----CcccCceEEEECCCCcEEEeecCCCCCCCceeeE
Q 009435 173 TETFVWKRATTSGN-PPSARDSHTCSSWKNKIIVIGGEDGH-----DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS 246 (535)
Q Consensus 173 ~~t~~W~~~~~~~~-~p~~r~~~s~~~~~~~lyv~GG~~~~-----~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs 246 (535)
+.+.+++.+..... .+..+....++.-++++|+-.-.... ......++++|+.. +...+... .. .-..
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~--~~---~png 153 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ--VD---ISNG 153 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE--ES---BEEE
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeec--cc---cccc
Confidence 99988887753211 11111111222226777763211110 01234688888763 33333210 11 1122
Q ss_pred EEEE--CCEEEEEeccCCCCCccCcEEEEec--CCCcE
Q 009435 247 TVAF--GKNLFVFGGFTDSQNLYDDLYMIDV--DSGLW 280 (535)
Q Consensus 247 ~v~~--~~~iyv~GG~~~~~~~~~dv~~yd~--~~~~W 280 (535)
++.. +..+|+.... .+.|++||+ .++..
T Consensus 154 i~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQI 185 (297)
T ss_dssp EEECTTSCEEEEEEGG------GTEEEEEEECTTTCCE
T ss_pred eEEcCCCCEEEEecCC------CCcEEEEeccCCCCcc
Confidence 3332 3457777643 245888886 45554
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=88.14 E-value=12 Score=40.98 Aligned_cols=162 Identities=13% Similarity=0.142 Sum_probs=84.6
Q ss_pred CCE-EEEEcCCCCCCCCCcEEEEECCCC--e-EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 94 GEN-LYVFGGTDGMNPLRDLHILDTSSH--T-WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 94 ~~~-Iyv~GG~~~~~~~~~~~~yd~~t~--~-W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
+++ |++... ......++++++|..+. . |+.+.. ...... ......++.||+....+ .....++
T Consensus 278 DG~~l~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~-~~~~~dg~~l~~~s~~~--------~~~~~l~ 344 (741)
T 1yr2_A 278 DGRWVVITSS-EGTDPVNTVHVARVTNGKIGPVTALIP---DLKAQW-DFVDGVGDQLWFVSGDG--------APLKKIV 344 (741)
T ss_dssp TSCEEEEEEE-CTTCSCCEEEEEEEETTEECCCEEEEC---SSSSCE-EEEEEETTEEEEEECTT--------CTTCEEE
T ss_pred CCCEEEEEEE-ccCCCcceEEEEECCCCCCcccEEecC---CCCceE-EEEeccCCEEEEEECCC--------CCCCEEE
Confidence 454 444432 22223578999999877 6 776652 111111 12234566777775421 1135688
Q ss_pred EEECCC--ccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEE
Q 009435 170 ILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST 247 (535)
Q Consensus 170 ~yd~~t--~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~ 247 (535)
++|+.+ ..|+.+..... .....+...++.+++....++ ...++.+|+....-..+.. |....-...
T Consensus 345 ~~d~~~~~~~~~~l~~~~~----~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~~----~~~~~v~~~ 412 (741)
T 1yr2_A 345 RVDLSGSTPRFDTVVPESK----DNLESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVSL----PGIGSASGL 412 (741)
T ss_dssp EEECSSSSCEEEEEECCCS----SEEEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECBC----SSSCEEEEE
T ss_pred EEeCCCCccccEEEecCCC----CeEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeeccC----CCCeEEEEe
Confidence 999887 57988863211 111223334788877765443 3468889976554444431 211111111
Q ss_pred E-EECC-EEEE-EeccCCCCCccCcEEEEecCCCcEEEEe
Q 009435 248 V-AFGK-NLFV-FGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 248 v-~~~~-~iyv-~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (535)
. .-++ .+++ +.+.. .-..+|.||+.+++.+.+.
T Consensus 413 ~~s~d~~~l~~~~ss~~----~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 413 SGRPGDRHAYLSFSSFT----QPATVLALDPATAKTTPWE 448 (741)
T ss_dssp ECCBTCSCEEEEEEETT----EEEEEEEEETTTTEEEECS
T ss_pred ecCCCCCEEEEEEcCCC----CCCEEEEEECCCCcEEEEe
Confidence 1 1122 3333 22222 1346899999888766553
No 190
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=87.53 E-value=22 Score=34.63 Aligned_cols=145 Identities=7% Similarity=-0.039 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEEC--CEEEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 96 NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 96 ~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
++++.|+.+ ..+.+||..+.+....... ......-.+++... +.+++.|+. ...+.++|+
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~-----------d~~i~iwd~ 148 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSI-----------RGATTLRDF 148 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEET-----------TTEEEEEET
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeC-----------CCEEEEEEC
Confidence 577777654 3588999987765433210 01111222333333 366666663 245778898
Q ss_pred CCccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-C
Q 009435 174 ETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G 251 (535)
Q Consensus 174 ~t~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~ 251 (535)
.+.....+..... ......+++.. ++.+++.|+.+ ..+.+||+.......+.. .. ..-.+++.. +
T Consensus 149 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~----h~-~~v~~~~~~~~ 215 (383)
T 3ei3_B 149 SGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL----HK-AKVTHAEFNPR 215 (383)
T ss_dssp TSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC----SS-SCEEEEEECSS
T ss_pred CCCceEEEeccCC--CCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc----CC-CcEEEEEECCC
Confidence 8776666542211 11111222222 56677777754 358889986554444432 11 111222222 3
Q ss_pred CE-EEEEeccCCCCCccCcEEEEecCC
Q 009435 252 KN-LFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 252 ~~-iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
+. +++.|+.+ ..+.+||+.+
T Consensus 216 ~~~~l~s~~~d------~~i~iwd~~~ 236 (383)
T 3ei3_B 216 CDWLMATSSVD------ATVKLWDLRN 236 (383)
T ss_dssp CTTEEEEEETT------SEEEEEEGGG
T ss_pred CCCEEEEEeCC------CEEEEEeCCC
Confidence 34 77777753 2488999987
No 191
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=87.34 E-value=16 Score=35.34 Aligned_cols=145 Identities=13% Similarity=0.082 Sum_probs=75.4
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEE-EEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC
Q 009435 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSA-ALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT 173 (535)
Q Consensus 95 ~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~-~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~ 173 (535)
+.+|+++-. -..+++||+.+++...... +. .-.++ ..-++++|+... ..+++||+
T Consensus 61 ~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----~~--~v~~i~~~~dg~l~v~~~-------------~gl~~~d~ 116 (326)
T 2ghs_A 61 GTAWWFNIL-----ERELHELHLASGRKTVHAL----PF--MGSALAKISDSKQLIASD-------------DGLFLRDT 116 (326)
T ss_dssp TEEEEEEGG-----GTEEEEEETTTTEEEEEEC----SS--CEEEEEEEETTEEEEEET-------------TEEEEEET
T ss_pred CEEEEEECC-----CCEEEEEECCCCcEEEEEC----CC--cceEEEEeCCCeEEEEEC-------------CCEEEEEC
Confidence 577777643 2469999999887654431 11 11222 234678877542 24899999
Q ss_pred CCccEEEeccCCC-CCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-C
Q 009435 174 ETFVWKRATTSGN-PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G 251 (535)
Q Consensus 174 ~t~~W~~~~~~~~-~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~ 251 (535)
.+.+.+.+..... .+..+....++.-++++|+.............++++| +.+...+... . .. ...++.. +
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~--~~-~~~i~~s~d 189 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--I--SI-PNSICFSPD 189 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--E--SS-EEEEEECTT
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--C--cc-cCCeEEcCC
Confidence 9988877653211 1111111112222567776432111111235689999 4665554320 0 11 1123322 3
Q ss_pred C-EEEEEeccCCCCCccCcEEEEecC
Q 009435 252 K-NLFVFGGFTDSQNLYDDLYMIDVD 276 (535)
Q Consensus 252 ~-~iyv~GG~~~~~~~~~dv~~yd~~ 276 (535)
+ .+|+.... .+.|++||+.
T Consensus 190 g~~lyv~~~~------~~~I~~~d~~ 209 (326)
T 2ghs_A 190 GTTGYFVDTK------VNRLMRVPLD 209 (326)
T ss_dssp SCEEEEEETT------TCEEEEEEBC
T ss_pred CCEEEEEECC------CCEEEEEEcc
Confidence 3 57776432 2469999975
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=87.18 E-value=20 Score=33.88 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccCCCCC-CCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI 170 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~-~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~ 170 (535)
.+++++.|..+ ..++++|..+++ |+... .. ....+..+..++++++.+. +.++.
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~~-------------~~V~~ 60 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSYS-------------KGAKM 60 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEECB-------------SEEEE
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeCC-------------CCEEE
Confidence 46777776543 678999997875 76432 11 1223333444678888322 45889
Q ss_pred EECCC-ccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCc-EEEeecCCCCCCC--ceee
Q 009435 171 LNTET-FVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSP--RAGH 245 (535)
Q Consensus 171 yd~~t-~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~-W~~v~~~g~~p~~--R~~h 245 (535)
||+.. ..|+.-. +.....+++... ++.+++..... ...++.+|+.... |+.-...+ .+.+ ....
T Consensus 61 ~d~~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~-~~~~~~~~~~ 129 (276)
T 3no2_A 61 ITRDGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETG-IERPHAQFRQ 129 (276)
T ss_dssp ECTTSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCS-CSSGGGSCSC
T ss_pred ECCCCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCC-CCcccccccC
Confidence 99832 2466543 111122333333 56666654321 1357888885543 44322111 1111 1112
Q ss_pred EEEEECCEEEEEeccCCCCCccCcEEEEecCCC-cEEE
Q 009435 246 STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTK 282 (535)
Q Consensus 246 s~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~-~W~~ 282 (535)
.....++.+++.... ...|.+||++-+ .|+.
T Consensus 130 v~~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 130 INKNKKGNYLVPLFA------TSEVREIAPNGQLLNSV 161 (276)
T ss_dssp CEECTTSCEEEEETT------TTEEEEECTTSCEEEEE
T ss_pred ceECCCCCEEEEecC------CCEEEEECCCCCEEEEE
Confidence 233345566655432 235899998733 3543
No 193
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=87.09 E-value=27 Score=35.20 Aligned_cols=209 Identities=12% Similarity=0.020 Sum_probs=106.5
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
.+++..++.||+.... .+.+.++|+.++.-..+...+. .++ .+...-++.||+...... ..++++|
T Consensus 135 ~la~d~~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~~--~~~--ia~~~~g~~l~~~d~~~~----~~I~~~d 200 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRD------DPRVRLISVDDNKVTTVHPGFK--GGK--PAVTKDKQRVYSIGWEGT----HTVYVYM 200 (409)
T ss_dssp EEEECSTTEEEEEETT------TTEEEEEETTTTEEEEEEETCC--BCB--CEECTTSSEEEEEBSSTT----CEEEEEE
T ss_pred EEEEeCCCCEEEEecC------CCcEEEEECCCCEEEEeeccCC--CCc--eeEecCCCcEEEEecCCC----ceEEEEE
Confidence 4445445568887552 2569999999887666542211 111 111112446776653211 1799999
Q ss_pred CCCCe-EEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCc
Q 009435 117 TSSHT-WISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 117 ~~t~~-W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~ 193 (535)
..+.. ...+..... .....-+.+++. ++.||+... ...+++||+.+.....+...+........
T Consensus 201 ~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 201 KASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDS------------NKNFGRFNVKTQEVTLIKQLELSGSLGTN 267 (409)
T ss_dssp GGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECT------------TCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred cCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEEC------------CCcEEEEECCCCCEEEEecccccCCCCCC
Confidence 86542 222211001 011122333333 578888422 23689999988776555221111111122
Q ss_pred -e-eEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCC-CCCC-------Cce--eeEEEEE-CCEEEEEe
Q 009435 194 -H-TCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG-MVLS-------PRA--GHSTVAF-GKNLFVFG 258 (535)
Q Consensus 194 -~-s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g-~~p~-------~R~--~hs~v~~-~~~iyv~G 258 (535)
. .++.. ++.||+.... .+.|++||+... ...+...+ .... .+. -..++.. +++|||..
T Consensus 268 P~~~ia~~p~~g~lyv~d~~------~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQN------LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp SCCEEEEETTTTEEEEEETT------TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred ccccEEEeCCCCEEEEEeCC------CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 1 34443 5889987432 346899998765 33332211 0000 011 1123322 46688885
Q ss_pred c-cCCCCCccCcEEEEecCCCcEEEEee
Q 009435 259 G-FTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 259 G-~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
. . ...|.++|+.++....+..
T Consensus 341 ~~~------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 341 GFK------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTT------TCEEEEEETTTTEEEEEEE
T ss_pred CCC------CCEEEEEECCCCEEEEEeC
Confidence 4 2 2458999977777666554
No 194
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=87.08 E-value=26 Score=34.94 Aligned_cols=212 Identities=15% Similarity=0.142 Sum_probs=99.0
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREG 137 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~ 137 (535)
+.++++|..+++...+- ........-.++.+ ++++++.|+.+ ..+.+||+.+.+-.... ......
T Consensus 125 ~tV~lWd~~tg~~~~~~---~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~~-----~~h~~~ 191 (420)
T 4gga_A 125 NSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNM-----TSHSAR 191 (420)
T ss_dssp TEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE-----CCCSSC
T ss_pred CEEEEEECCCCCEEEEE---EecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEEE-----eCCCCc
Confidence 46999999998766543 11111222233333 56777788765 35889999887643322 111122
Q ss_pred eEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccC
Q 009435 138 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLS 217 (535)
Q Consensus 138 hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~ 217 (535)
..+...++.+++.|+.+ ..+..+|............+. ............+..++.|+.++
T Consensus 192 v~~~s~~~~~l~sgs~d-----------~~i~~~d~~~~~~~~~~~~~h--~~~~~~~~~~~~g~~l~s~~~D~------ 252 (420)
T 4gga_A 192 VGSLSWNSYILSSGSRS-----------GHIHHHDVRVAEHHVATLSGH--SQEVCGLRWAPDGRHLASGGNDN------ 252 (420)
T ss_dssp EEEEEEETTEEEEEETT-----------SEEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEETTS------
T ss_pred eEEEeeCCCEEEEEeCC-----------CceeEeeecccceeeEEeccc--ccceeeeeecCCCCeeeeeeccc------
Confidence 33444566777777732 345666665443222211110 11111111122556666666543
Q ss_pred ceEEEECCCCc--EEEeecCCCCCCCceeeEEEE--ECCEEEEEe-ccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCC
Q 009435 218 DVHILDTDTLT--WKELNTSGMVLSPRAGHSTVA--FGKNLFVFG-GFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSA 292 (535)
Q Consensus 218 ~i~~yd~~t~~--W~~v~~~g~~p~~R~~hs~v~--~~~~iyv~G-G~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~ 292 (535)
.+.++|..+.. +..+... ......-.+++. .+..+++.+ |..+ ..|.+||+.++.-........ .
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~p~~~~~la~~~gs~D-----~~I~iwd~~t~~~~~~~~~~~---~ 322 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLATGGGTSD-----RHIRIWNVCSGACLSAVDAHS---Q 322 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEE--CCCSSCEEEEEECTTCTTEEEEEECTTT-----CEEEEEETTTTEEEEEEECSS---C
T ss_pred cceEEeeccccccceeeeee--cccCCceeeeeeCCCcccEEEEEeecCC-----CEEEEEeCCccccceeecccc---c
Confidence 36677765432 1111110 000001111122 234455554 4332 248899998876544433211 1
Q ss_pred ceeeeeeeecccCCCEEEEEcccCC
Q 009435 293 RFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 293 r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
....++ ...++.+++..|+..
T Consensus 323 ---v~~~~~-~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 323 ---VCSILW-SPHYKELISGHGFAQ 343 (420)
T ss_dssp ---EEEEEE-ETTTTEEEEEECTTT
T ss_pred ---eeeeee-cCCCCeEEEEEecCC
Confidence 111122 244666666666543
No 195
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=87.00 E-value=9.9 Score=37.12 Aligned_cols=54 Identities=4% Similarity=-0.194 Sum_probs=28.6
Q ss_pred CceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 217 ~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
..+.+||..+.+-...-. .........+..-++.+++.|+.+. .|.+||+.+..
T Consensus 314 ~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg------~i~iw~~~~~~ 367 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLK---GHYKTVDCCVFQSNFQELYSGSRDC------NILAWVPSLYE 367 (408)
T ss_dssp TEEEEEETTTCCEEEEEC---CCSSCEEEEEEETTTTEEEEEETTS------CEEEEEECC--
T ss_pred CEEEEEECcCCcceeeec---cCCCeEEEEEEcCCCCEEEEECCCC------eEEEEeCCCCC
Confidence 358889988765433221 1111122222233566777777643 48888887653
No 196
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=86.94 E-value=21 Score=33.86 Aligned_cols=218 Identities=11% Similarity=-0.020 Sum_probs=102.4
Q ss_pred cceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcE
Q 009435 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 34 gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~ 112 (535)
....+...+++.||+.+-. .+.+++|++ +.+...+.. +.. ...+.+.- ++++|+.... ...+
T Consensus 47 ~egp~~~~~g~~l~~~d~~------~~~i~~~~~-~g~~~~~~~----~~~-~~~gl~~d~dG~l~v~~~~-----~~~v 109 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLV------GRRVLGWRE-DGTVDVLLD----ATA-FTNGNAVDAQQRLVHCEHG-----RRAI 109 (305)
T ss_dssp EEEEEEEGGGTEEEEEETT------TTEEEEEET-TSCEEEEEE----SCS-CEEEEEECTTSCEEEEETT-----TTEE
T ss_pred ccCCeEeCCCCEEEEEECC------CCEEEEEeC-CCCEEEEeC----CCC-ccceeeECCCCCEEEEECC-----CCEE
Confidence 3444555667767776542 256889988 454444331 111 11222222 5678876421 1468
Q ss_pred EEEECCCCeEEecccc-CCCCCCCCCeEEEEECCEEEEE----cCCCCC--CCCCCceeeeeEEEEECCCccEEEeccCC
Q 009435 113 HILDTSSHTWISPSVR-GEGPEAREGHSAALVGKRLFIF----GGCGKS--SNTNDEVYYNDLYILNTETFVWKRATTSG 185 (535)
Q Consensus 113 ~~yd~~t~~W~~~~~~-g~~p~~r~~hs~~~~~~~lyv~----GG~~~~--~~~~~~~~~n~v~~yd~~t~~W~~~~~~~ 185 (535)
.+||+. .+.+.+... ...+..+-...++.-+++||+. |-.... ...........|++||+.+.++..+. .
T Consensus 110 ~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~- 186 (305)
T 3dr2_A 110 TRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D- 186 (305)
T ss_dssp EEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-
T ss_pred EEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-
Confidence 888876 555543311 0111111122223335778884 321100 00001112467999999888777664 1
Q ss_pred CCCCCCCceeEEee-C-CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCC
Q 009435 186 NPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (535)
Q Consensus 186 ~~p~~r~~~s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~ 263 (535)
... ...++.. + ..||+....... ...+.|++||+..............+......-++-.+++||+..+
T Consensus 187 -~~~---p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~---- 257 (305)
T 3dr2_A 187 -LDH---PNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG---- 257 (305)
T ss_dssp -ESS---EEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS----
T ss_pred -CCC---CcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC----
Confidence 111 1223332 3 357776432110 0125689998876542211110001111111112223466776542
Q ss_pred CCccCcEEEEecCCCcEEEEe
Q 009435 264 QNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 264 ~~~~~dv~~yd~~~~~W~~l~ 284 (535)
+.|++||++......+.
T Consensus 258 ----~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 258 ----TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp ----SEEEEECTTSCEEEEEE
T ss_pred ----CcEEEECCCCCEEEEEE
Confidence 24999999766555554
No 197
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.56 E-value=22 Score=35.37 Aligned_cols=192 Identities=14% Similarity=0.146 Sum_probs=101.1
Q ss_pred EEEEEcCC--CeEEEeeccCCCCCCCCceEEEEE---CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCC--
Q 009435 62 VHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEA-- 134 (535)
Q Consensus 62 ~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~---~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~-- 134 (535)
+++++... .+|..+.. .+....-++++.. .+.||+.+.... .-.-+++.+-...+|+++......+..
T Consensus 33 l~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~~~~~~~ 107 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPAFNKAPE 107 (394)
T ss_dssp EEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC-
T ss_pred eEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCccccCCCccc
Confidence 77777654 68997531 1112222333333 456887753211 112477776667889887632111211
Q ss_pred -----CCCe--EEEEE----CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC--------------C
Q 009435 135 -----REGH--SAALV----GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP--------------S 189 (535)
Q Consensus 135 -----r~~h--s~~~~----~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p--------------~ 189 (535)
...+ +++.. .+.||+.+- ...|++.+-...+|+.+......| .
T Consensus 108 ~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 108 GETGRVVDHVFWLTPGHASEPGTWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp ---CCCCCEEEEEEECCTTSTTCEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred ccccccccceeEEEeCCCCCCCEEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCC
Confidence 1112 23332 456776532 135788888888999985321111 1
Q ss_pred CCCceeEEee---CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCC---CCCCC-----ceeeEEEEEC---CEEE
Q 009435 190 ARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG---MVLSP-----RAGHSTVAFG---KNLF 255 (535)
Q Consensus 190 ~r~~~s~~~~---~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g---~~p~~-----R~~hs~v~~~---~~iy 255 (535)
....+++++. .+.||+.... ..+++.+-...+|+.+.... .+|.+ ...+.++... +.||
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~ 248 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILY 248 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEE
T ss_pred CCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEE
Confidence 1122344433 3567765331 23777777888999885311 11211 2234444432 5666
Q ss_pred EEeccCCCCCccCcEEEEecCCCcEEEEee
Q 009435 256 VFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 256 v~GG~~~~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
+-.+ ..|++.+-...+|+.+..
T Consensus 249 vg~~--------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 249 QQNH--------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEET--------TEEEEEETTTTEEECGGG
T ss_pred EEcC--------CeEEEeCCCCCcceECCC
Confidence 6321 238888888899998853
No 198
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=85.78 E-value=8.6 Score=38.83 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCCCcEEEEECCCCe---EE--eccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 97 LYVFGGTDGMNPLRDLHILDTSSHT---WI--SPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 97 Iyv~GG~~~~~~~~~~~~yd~~t~~---W~--~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
+++.|+.+ ..+.+||+.+.. +. ..... ......-++++.. ++.+++.|+. ...+.
T Consensus 196 ~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~l~s~~~-----------dg~i~ 257 (430)
T 2xyi_A 196 YLLSASDD-----HTICLWDINATPKEHRVIDAKNIF--TGHTAVVEDVAWHLLHESLFGSVAD-----------DQKLM 257 (430)
T ss_dssp EEEEECTT-----SCEEEEETTSCCBGGGEEECSEEE--CCCSSCEEEEEECSSCTTEEEEEET-----------TSEEE
T ss_pred eEEEEeCC-----CeEEEEeCCCCCCCCceeccceee--cCCCCCEeeeEEeCCCCCEEEEEeC-----------CCeEE
Confidence 77777654 358888887621 11 11100 0111112223332 3567777663 24578
Q ss_pred EEECCCcc----EEEeccCCCCCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCC
Q 009435 170 ILNTETFV----WKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSP 241 (535)
Q Consensus 170 ~yd~~t~~----W~~~~~~~~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~ 241 (535)
+||+.+.. -..+.. ....-.+++.. +..+++.|+.++ .+.+||+.+.. -..+.. ..
T Consensus 258 i~d~~~~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~~dg------~v~vwd~~~~~~~~~~~~~-----h~ 321 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADK------TVALWDLRNLKLKLHSFES-----HK 321 (430)
T ss_dssp EEETTCSCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTS------EEEEEETTCTTSCSEEEEC-----CS
T ss_pred EEECCCCCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEeCCC------eEEEEeCCCCCCCeEEeec-----CC
Confidence 88887542 111110 00111122222 334788887653 48889987632 122211 01
Q ss_pred ceeeEEEEE--CCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 242 RAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 242 R~~hs~v~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
..-.++... +..+++.||.. +.|.+||+..
T Consensus 322 ~~v~~i~~sp~~~~~l~s~~~d------~~i~iwd~~~ 353 (430)
T 2xyi_A 322 DEIFQVQWSPHNETILASSGTD------RRLHVWDLSK 353 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETT------SCCEEEEGGG
T ss_pred CCEEEEEECCCCCCEEEEEeCC------CcEEEEeCCC
Confidence 111122222 33577777754 2488888876
No 199
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=85.72 E-value=26 Score=33.75 Aligned_cols=154 Identities=9% Similarity=0.022 Sum_probs=79.4
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEE-EECCEEEEEcCCCCCCCCCcEE
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCT-TVGENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~Iyv~GG~~~~~~~~~~~ 113 (535)
...+...+++.+|+++.. ...+++||+.+++...+.. + ..-.+.+ .-++++++... +.++
T Consensus 52 egp~~~~~~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~--~~v~~i~~~~dg~l~v~~~-------~gl~ 112 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNIL------ERELHELHLASGRKTVHAL----P--FMGSALAKISDSKQLIASD-------DGLF 112 (326)
T ss_dssp EEEEEETTTTEEEEEEGG------GTEEEEEETTTTEEEEEEC----S--SCEEEEEEEETTEEEEEET-------TEEE
T ss_pred cCCeEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEC----C--CcceEEEEeCCCeEEEEEC-------CCEE
Confidence 344444555678777543 2479999999887665432 1 1112222 33678877642 3599
Q ss_pred EEECCCCeEEeccccCC-CCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCC
Q 009435 114 ILDTSSHTWISPSVRGE-GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARD 192 (535)
Q Consensus 114 ~yd~~t~~W~~~~~~g~-~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~ 192 (535)
+||+.+.+.+.+..... .+..+.....+.-++++|+... .. ........++++| +.+...+..... .
T Consensus 113 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~-~~----~~~~~~~~l~~~~--~g~~~~~~~~~~-----~ 180 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTM-GR----KAETGAGSIYHVA--KGKVTKLFADIS-----I 180 (326)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEE-ET----TCCTTCEEEEEEE--TTEEEEEEEEES-----S
T ss_pred EEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeC-CC----cCCCCceEEEEEe--CCcEEEeeCCCc-----c
Confidence 99999988776542111 1111111112222467776421 10 0111246789998 455555431100 1
Q ss_pred ceeEEee-CC-EEEEEecCCCCCcccCceEEEECC
Q 009435 193 SHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTD 225 (535)
Q Consensus 193 ~~s~~~~-~~-~lyv~GG~~~~~~~~~~i~~yd~~ 225 (535)
...++.. ++ .+|+.... .+.|++||..
T Consensus 181 ~~~i~~s~dg~~lyv~~~~------~~~I~~~d~~ 209 (326)
T 2ghs_A 181 PNSICFSPDGTTGYFVDTK------VNRLMRVPLD 209 (326)
T ss_dssp EEEEEECTTSCEEEEEETT------TCEEEEEEBC
T ss_pred cCCeEEcCCCCEEEEEECC------CCEEEEEEcc
Confidence 1223332 33 57776432 2468899875
No 200
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=85.59 E-value=23 Score=32.91 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=87.4
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
++...+++ .++.|+.+ ..+.+||..+..-....... ...-.+++.. ++++++.|+.++ .+.++
T Consensus 23 ~~~~~~~~-~l~s~~~d------g~v~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~ 86 (313)
T 3odt_A 23 DVVAVDDS-KVASVSRD------GTVRLWSKDDQWLGTVVYTG----QGFLNSVCYDSEKELLLFGGKDT-----MINGV 86 (313)
T ss_dssp EEEEEETT-EEEEEETT------SEEEEEEESSSEEEEEEEEC----SSCEEEEEEETTTTEEEEEETTS-----CEEEE
T ss_pred EEEecCCC-EEEEEEcC------CcEEEEECCCCEEEEEeecC----CccEEEEEECCCCCEEEEecCCC-----eEEEE
Confidence 33445565 45556533 46888998776544422111 1111222222 566777776543 46677
Q ss_pred ECCCCe-EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 116 DTSSHT-WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 116 d~~t~~-W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
++.... ..... ..............++.+++.|+. ...+.++|.......... ... ...
T Consensus 87 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~-----~~~-~v~ 146 (313)
T 3odt_A 87 PLFATSGEDPLY---TLIGHQGNVCSLSFQDGVVISGSW-----------DKTAKVWKEGSLVYNLQA-----HNA-SVW 146 (313)
T ss_dssp ETTCCTTSCC-C---EECCCSSCEEEEEEETTEEEEEET-----------TSEEEEEETTEEEEEEEC-----CSS-CEE
T ss_pred EeeecCCCCccc---chhhcccCEEEEEecCCEEEEEeC-----------CCCEEEEcCCcEEEeccc-----CCC-cee
Confidence 765421 11111 011111222233335556666663 234667773322222211 111 111
Q ss_pred eEEe-e-CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEE
Q 009435 195 TCSS-W-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 195 s~~~-~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
++.. . ++.+++.|+.++ .+..||..... ..+.. .........+..-++. ++.|+.. ..+.+
T Consensus 147 ~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~-~~~~~---~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i 209 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADK------TIKLWQNDKVI-KTFSG---IHNDVVRHLAVVDDGH-FISCSND------GLIKL 209 (313)
T ss_dssp EEEEEETTTTEEEEEETTS------CEEEEETTEEE-EEECS---SCSSCEEEEEEEETTE-EEEEETT------SEEEE
T ss_pred EEEEccCCCCEEEEEECCC------CEEEEecCceE-EEEec---cCcccEEEEEEcCCCe-EEEccCC------CeEEE
Confidence 2222 2 566677777543 37788833221 11211 1122222233344566 6666643 34899
Q ss_pred EecCCCcE
Q 009435 273 IDVDSGLW 280 (535)
Q Consensus 273 yd~~~~~W 280 (535)
||+.+..-
T Consensus 210 ~d~~~~~~ 217 (313)
T 3odt_A 210 VDMHTGDV 217 (313)
T ss_dssp EETTTCCE
T ss_pred EECCchhh
Confidence 99987653
No 201
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=85.58 E-value=16 Score=35.08 Aligned_cols=194 Identities=11% Similarity=0.076 Sum_probs=94.9
Q ss_pred CcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCC
Q 009435 58 QTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (535)
Q Consensus 58 ~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 136 (535)
....+|++|..+.+-..+. . ......- +++.+++...........+|++|+.+.+...+... +.
T Consensus 41 ~~~~l~~~d~~~~~~~~l~--------~-~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~--- 105 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE--------N-ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---KN--- 105 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE--------S-CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---SE---
T ss_pred ccceEEEEeCCCCceEEcc--------c-CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---CC---
Confidence 3567999999888765541 1 1112222 44433333222211234699999998887665421 11
Q ss_pred CeEEEEE-CCEEEEEcCCCCCCCC------------CC----ceeeeeEEEEECCCccE-EEeccCCCCCCCCCceeEEe
Q 009435 137 GHSAALV-GKRLFIFGGCGKSSNT------------ND----EVYYNDLYILNTETFVW-KRATTSGNPPSARDSHTCSS 198 (535)
Q Consensus 137 ~hs~~~~-~~~lyv~GG~~~~~~~------------~~----~~~~n~v~~yd~~t~~W-~~~~~~~~~p~~r~~~s~~~ 198 (535)
....... +++.+++......... .+ ......++++|+.+.+. ..+.. + .....+.
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~ 178 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P---RFSSGIW 178 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E---TTCEEEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C---CcccccC
Confidence 1222222 4444444331100000 00 01146799999998887 66652 1 2223333
Q ss_pred eCCEEEEEecCCCCCc--c-cCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCC--CCccCcEEEE
Q 009435 199 WKNKIIVIGGEDGHDY--Y-LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS--QNLYDDLYMI 273 (535)
Q Consensus 199 ~~~~lyv~GG~~~~~~--~-~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~--~~~~~dv~~y 273 (535)
..+.+++.+..+.... . ...++.+| +.+++.+... .......-+++.+++.+.... ......||++
T Consensus 179 spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 179 HRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp ETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred CCCeEEEEEecccccccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 3333555554332211 2 45788898 7777776541 111222445554444443221 1124579999
Q ss_pred ecCCCcEEEEe
Q 009435 274 DVDSGLWTKVI 284 (535)
Q Consensus 274 d~~~~~W~~l~ 284 (535)
| ++.+..+.
T Consensus 250 d--~~~~~~l~ 258 (347)
T 2gop_A 250 D--GKEVMGIL 258 (347)
T ss_dssp C--SSCEEESS
T ss_pred C--CCceEecc
Confidence 9 66666553
No 202
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=85.45 E-value=35 Score=36.68 Aligned_cols=109 Identities=10% Similarity=-0.087 Sum_probs=53.6
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCC----CCCCcEEEEECCCCeEEeccccCCCCCCCC
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGM----NPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~----~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 136 (535)
.++++|..+++-..+..............+..-+++.++++..+.. .....++++|+.+.+-+.+.... ....+.
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~ 116 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKL 116 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccc
Confidence 6889998887655543111110001111112225555555543322 23478999999987755444211 111111
Q ss_pred CeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 137 GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 137 ~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
......-+++.++++.. ..++++|+.+.....+.
T Consensus 117 ~~~~~SPdG~~la~~~~------------~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIFE------------NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SBCCBCSSTTCEEEEET------------TEEEEESSSSSCCEEEE
T ss_pred cccEECCCCCEEEEEEC------------CeEEEEECCCCceEEEe
Confidence 12222234554455441 35788888777666554
No 203
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=85.44 E-value=35 Score=36.66 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=33.6
Q ss_pred eeEEEEECCCccE-EEeccCCCCCCCCCceeEE--eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 009435 166 NDLYILNTETFVW-KRATTSGNPPSARDSHTCS--SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (535)
Q Consensus 166 n~v~~yd~~t~~W-~~~~~~~~~p~~r~~~s~~--~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v 232 (535)
..++++|+.+.+- ..+...............+ .-+++++++...... ....++++|+.+.+...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ--NVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS--CEEEEEEEETTTCCEEEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC--CeEEEEEEeCCCCcceEE
Confidence 4788999887762 4443110000001111112 226776655543221 235689999998876655
No 204
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=85.42 E-value=23 Score=37.14 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=53.7
Q ss_pred EEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEE
Q 009435 169 YILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (535)
Q Consensus 169 ~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v 248 (535)
.+||+.+.+.+.+... +. ......-+++.+++++.+..+ ...++++|+.+.+++.+... .......+.
T Consensus 135 ~l~d~~~g~~~~l~~~---~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~----~~~~~~~~~ 202 (582)
T 3o4h_A 135 ALYALDGGGLRELARL---PG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSG----EGSFSSASI 202 (582)
T ss_dssp EEEEEETTEEEEEEEE---SS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCS----SCEEEEEEE
T ss_pred eEEEccCCcEEEeecC---CC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecC----CCccccceE
Confidence 3678888877776522 11 122222356666655543222 24599999999998877431 111122222
Q ss_pred EECCEEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 249 AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 249 ~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
.-+++.++.+.... ...|+++|++++...
T Consensus 203 SpDG~~l~~~~~~~----~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 203 SPGMKVTAGLETAR----EARLVTVDPRDGSVE 231 (582)
T ss_dssp CTTSCEEEEEECSS----CEEEEEECTTTCCEE
T ss_pred CCCCCEEEEccCCC----eeEEEEEcCCCCcEE
Confidence 23455444332211 246999999998877
No 205
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=85.37 E-value=25 Score=37.95 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=72.9
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
++++++.|+.+ ..+.++|+.+..-...- .+ ....-.+++.. +++.++.|+.+ ..+.++|
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~-~~---h~~~v~~~~~s~~~~~l~s~s~D-----------~~i~iwd 500 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRF-VG---HTKDVLSVAFSLDNRQIVSASRD-----------RTIKLWN 500 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEE-EC---CSSCEEEEEECTTSSCEEEEETT-----------SCEEEEC
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEE-eC---CCCCEEEEEEeCCCCEEEEEeCC-----------CEEEEEE
Confidence 56677777764 46889998887543211 11 01111122222 45566666632 3456667
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEee--C--CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEE
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSSW--K--NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~~--~--~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v 248 (535)
.....-..+..... .-+....++.+ + ..+++.|+.++ .+.+||+.+.+-...-. ..... -.+++
T Consensus 501 ~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~---~h~~~-v~~v~ 568 (694)
T 3dm0_A 501 TLGECKYTISEGGE--GHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTLA---GHTGY-VSTVA 568 (694)
T ss_dssp TTSCEEEEECSSTT--SCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEEC---CCSSC-EEEEE
T ss_pred CCCCcceeeccCCC--CCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEEc---CCCCC-EEEEE
Confidence 65443222221111 11111222222 2 24666776543 38889988765443221 11111 12222
Q ss_pred E-ECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 249 A-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 249 ~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
. -++++++.|+.+. .|.+||+.+..
T Consensus 569 ~spdg~~l~sg~~Dg------~i~iwd~~~~~ 594 (694)
T 3dm0_A 569 VSPDGSLCASGGKDG------VVLLWDLAEGK 594 (694)
T ss_dssp ECTTSSEEEEEETTS------BCEEEETTTTE
T ss_pred EeCCCCEEEEEeCCC------eEEEEECCCCc
Confidence 2 2567777777542 48899998775
No 206
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=85.18 E-value=20 Score=38.25 Aligned_cols=170 Identities=14% Similarity=0.041 Sum_probs=91.3
Q ss_pred EEcCCCEEEEECCcCCCCC--CcceEEEEEcC-CC---eEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCc
Q 009435 39 AIKGGRFLYVFGGYGKDNC--QTNQVHVFDTV-NQ---TWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRD 111 (535)
Q Consensus 39 ~v~~~~~Iyi~GG~~~~~~--~~~~~~~yd~~-t~---~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~ 111 (535)
..++++.|++.. .+.... ...+++++|.. ++ +...+.. + . .......+.. ++++|+.+..++ ...
T Consensus 195 ~SpDG~~la~~~-~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-~--~-~~~~~~~~~spdg~l~~~~~~~~---~~~ 266 (662)
T 3azo_A 195 LSPDGRQAVWLA-WDHPRMPWEGTELKTARVTEDGRFADTRTLLG-G--P-EEAIAQAEWAPDGSLIVATDRTG---WWN 266 (662)
T ss_dssp ECTTSSEEEEEE-ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-E--T-TBCEEEEEECTTSCEEEEECTTS---SCE
T ss_pred ECCCCCEEEEEE-CCCCCCCCCCcEEEEEEECCCCcccccEEeCC-C--C-CceEcceEECCCCeEEEEECCCC---CeE
Confidence 345666665443 322111 12579999998 56 4444431 1 0 1111222222 667777765442 347
Q ss_pred EEEEECCCCeEEeccccC-CCCCCCC---CeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCC
Q 009435 112 LHILDTSSHTWISPSVRG-EGPEARE---GHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 186 (535)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g-~~p~~r~---~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~ 186 (535)
+|++|+.+.+++.+.... ....+.. ....+.. ++++++.+.. -...++.+|+.+...+.+...
T Consensus 267 l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~d~~~~~~~~l~~~-- 334 (662)
T 3azo_A 267 LHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK----------GAAVLGILDPESGELVDAAGP-- 334 (662)
T ss_dssp EEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS----------SSCEEEEEETTTTEEEECCSS--
T ss_pred EEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc----------CccEEEEEECCCCcEEEecCC--
Confidence 999999888887654211 0101111 1123333 5667666541 135688889988877776421
Q ss_pred CCCCCCceeE-EeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeec
Q 009435 187 PPSARDSHTC-SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 187 ~p~~r~~~s~-~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
. .....+ ...++.+++..+... ....++.+|+.+.+.+.+..
T Consensus 335 --~-~~~~~~~s~~~~~~~~~~~~~~---~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 335 --W-TEWAATLTVSGTRAVGVAASPR---TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp --C-CEEEEEEEEETTEEEEEEEETT---EEEEEEEEETTTCCEEEEES
T ss_pred --C-CeEEEEEecCCCEEEEEEcCCC---CCCEEEEEECCCCceEEeec
Confidence 1 111222 334666666544322 23568999999988888754
No 207
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=85.02 E-value=26 Score=33.02 Aligned_cols=73 Identities=8% Similarity=0.020 Sum_probs=37.2
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEee-ccCCCCCCCCceEEEEE----CCEEEEEcCCCCCCCCCcE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPV-IKGSPPTPRDSHSCTTV----GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~-~~g~~P~~R~~hs~~~~----~~~Iyv~GG~~~~~~~~~~ 112 (535)
+++..++..++.|+.+ ..+.+||..+.....+. ..+. ...-.++.+ ++.+++.|+.+ ..+
T Consensus 15 ~~~s~~g~~las~s~D------~~v~iw~~~~~~~~~~~~l~gH----~~~V~~v~~s~~~~g~~l~s~s~D-----~~v 79 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSD------KTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD-----GKV 79 (297)
T ss_dssp EEECTTSSEEEEEETT------SCEEEEEBCSSCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT-----TEE
T ss_pred EEECCCCCEEEEEeCC------CEEEEEecCCCCcEEEEEEccc----cCCeEEEEecCCCcCCEEEEEcCC-----CEE
Confidence 3443333466667654 34778887654322211 0111 111122222 25677777765 357
Q ss_pred EEEECCCCeEEec
Q 009435 113 HILDTSSHTWISP 125 (535)
Q Consensus 113 ~~yd~~t~~W~~~ 125 (535)
.++|+.+..|..+
T Consensus 80 ~iWd~~~~~~~~~ 92 (297)
T 2pm7_B 80 MIWKEENGRWSQI 92 (297)
T ss_dssp EEEEBSSSCBCCC
T ss_pred EEEEcCCCceEEE
Confidence 8888887776543
No 208
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=84.96 E-value=25 Score=32.86 Aligned_cols=63 Identities=5% Similarity=-0.023 Sum_probs=33.5
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCc-eeeEEEEECC-----EEEEEeccCCCCCccCcEEEEe
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR-AGHSTVAFGK-----NLFVFGGFTDSQNLYDDLYMID 274 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R-~~hs~v~~~~-----~iyv~GG~~~~~~~~~dv~~yd 274 (535)
+.+++.|+.++ .+..++........+.. ..... .-.++....+ .+++.|+.+. .|.+||
T Consensus 182 ~~~l~~~~~~~------~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg------~i~iwd 246 (351)
T 3f3f_A 182 PEKLAVSALEQ------AIIYQRGKDGKLHVAAK---LPGHKSLIRSISWAPSIGRWYQLIATGCKDG------RIRIFK 246 (351)
T ss_dssp CCEEEEEETTE------EEEEEECTTSCEEEEEE---CCCCCSCEEEEEECCCSSCSSEEEEEEETTS------CEEEEE
T ss_pred CcEEEEecCCC------cEEEEccCCCceeeeee---cCCCCcceeEEEECCCCCCcceEEEEEcCCC------eEEEEe
Confidence 66777777543 24555666666655443 21111 1223333333 6788877543 377777
Q ss_pred cCCC
Q 009435 275 VDSG 278 (535)
Q Consensus 275 ~~~~ 278 (535)
+.+.
T Consensus 247 ~~~~ 250 (351)
T 3f3f_A 247 ITEK 250 (351)
T ss_dssp EEEC
T ss_pred CCCC
Confidence 7653
No 209
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=84.90 E-value=31 Score=33.86 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=91.7
Q ss_pred EEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCC-CCceEEEEE---CCEEEEEcCCCCCCCCCcEEEEECCCCe
Q 009435 46 LYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP-RDSHSCTTV---GENLYVFGGTDGMNPLRDLHILDTSSHT 121 (535)
Q Consensus 46 Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~-R~~hs~~~~---~~~Iyv~GG~~~~~~~~~~~~yd~~t~~ 121 (535)
.++.|+.+ ..+.+||..+++-...- ....+.. ...-.++.+ ++.+++.|+.++ .+.+||+....
T Consensus 172 ~l~s~s~D------~~i~~wd~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~~ 239 (380)
T 3iz6_a 172 RLITGSGD------QTCVLWDVTTGQRISIF-GSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLRITS 239 (380)
T ss_dssp CEEEECTT------SCEEEECTTTCCEEEEE-CCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTTC
T ss_pred EEEEECCC------CcEEEEEcCCCcEEEEe-ecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCCC
Confidence 45555543 35788898887654322 1111111 111122222 567888888653 57888875321
Q ss_pred --EEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCC----CCCCCce
Q 009435 122 --WISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP----PSARDSH 194 (535)
Q Consensus 122 --W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~----p~~r~~~ 194 (535)
-..+. + ... .-.+++.. ++..++.|+.+ ..+.++|+.+..-...-..... ..+....
T Consensus 240 ~~~~~~~--~--h~~-~v~~v~~~p~~~~l~s~s~D-----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 303 (380)
T 3iz6_a 240 RAVRTYH--G--HEG-DINSVKFFPDGQRFGTGSDD-----------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS 303 (380)
T ss_dssp CCCEEEC--C--CSS-CCCEEEECTTSSEEEEECSS-----------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred cceEEEC--C--cCC-CeEEEEEecCCCeEEEEcCC-----------CeEEEEECCCCcEEEEecccccccccccCceEE
Confidence 11111 0 001 11122222 45677777732 3477888887654332211000 0011111
Q ss_pred eEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEee-cCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEE
Q 009435 195 TCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELN-TSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 195 s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~-~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
.+...++.+++.|+.++ .+.+||..+.+-...- ........+....+..-++.+++.|+.+. .+.+|
T Consensus 304 ~~~s~~g~~l~~g~~dg------~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~------~i~iW 371 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNG------DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK------NLKIW 371 (380)
T ss_dssp EEECSSSSEEEEECTTS------CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS------CEEEE
T ss_pred EEECCCCCEEEEEECCC------CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC------CEEEE
Confidence 22223677777776543 4889998776543321 10001111222222233567788888643 37777
Q ss_pred ecCCC
Q 009435 274 DVDSG 278 (535)
Q Consensus 274 d~~~~ 278 (535)
++...
T Consensus 372 ~~~~~ 376 (380)
T 3iz6_a 372 AFSGH 376 (380)
T ss_dssp ECCSS
T ss_pred ecCCC
Confidence 76543
No 210
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=84.82 E-value=21 Score=32.34 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=60.5
Q ss_pred CCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccC-CCCCC--CCceEEEEECCEEEEEcCCCCCCCCCcEEEEECC
Q 009435 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKG-SPPTP--RDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS 118 (535)
Q Consensus 42 ~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g-~~P~~--R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~ 118 (535)
.++++|+|-| +.+|+|+..+..- .-.+.. .+|.. ....+....++++|+|-| +..|+||..
T Consensus 63 ~~~~~yfFkG--------~~yw~~~~~~~~~-Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~ 126 (195)
T 1itv_A 63 LSKKLFFFSG--------RQVWVYTGASVLG-PRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVK 126 (195)
T ss_dssp TTCCEEEEET--------TEEEEEETTEEEE-EEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETT
T ss_pred CCCeEEEEeC--------CEEEEEcCCccCC-CEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCC
Confidence 3567999977 5789998653221 111111 23332 233333323689999977 579999988
Q ss_pred CCeEEe-----cc-ccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc
Q 009435 119 SHTWIS-----PS-VRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (535)
Q Consensus 119 t~~W~~-----~~-~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~ 177 (535)
+++-.. +. .-..+| ..-.++...++.+|+|-| +..++||..+..
T Consensus 127 ~~~~~~gyPr~i~~~w~Gvp--~~idaa~~~~g~~Yffkg-------------~~y~~~~~~~~~ 176 (195)
T 1itv_A 127 AQMVDPRSASEVDRMFPGVP--LDTHDVFQFREKAYFCQD-------------RFYWRVSSRSEL 176 (195)
T ss_dssp TTEECGGGCEEHHHHSTTSC--SSCSEEEEETTEEEEEET-------------TEEEEEECCTTC
T ss_pred cccccCCCccChhhcCCCCC--CCCCEEEEeCCeEEEEeC-------------CEEEEEECCccE
Confidence 765321 11 111122 223355556799999988 457888887654
No 211
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=84.45 E-value=25 Score=32.40 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=79.2
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCe-EE--eccccC-CCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCce
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHT-WI--SPSVRG-EGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEV 163 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~-W~--~~~~~g-~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~ 163 (535)
+++.+.+++|+|=| +.+|+++..... .. .+.... .+| ....++... .++++|+|-|
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp-~~IDAA~~~~~~~k~yfFkG----------- 95 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELP-EKIDAVYEAPQEEKAVFFAG----------- 95 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSC-SCCSEEEEETTTTEEEEEET-----------
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCC-CCccEEEEECCCCEEEEEeC-----------
Confidence 45567899999987 457777654421 11 122111 233 223333332 2589999988
Q ss_pred eeeeEEEEECCCc---cEEEeccCCCCCCCCCceeEEe--eCCEEEEEecCCCCCcccCceEEEECCCCcEEE-----ee
Q 009435 164 YYNDLYILNTETF---VWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LN 233 (535)
Q Consensus 164 ~~n~v~~yd~~t~---~W~~~~~~~~~p~~r~~~s~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----v~ 233 (535)
+..|+||..+- -=+.+...+-+.....--++.. .++++|+|-| +..|+||..+.+-.. +.
T Consensus 96 --~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG--------~~ywr~d~~~~~v~~gyPr~i~ 165 (218)
T 1gen_A 96 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPKLIA 165 (218)
T ss_dssp --TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCEEHH
T ss_pred --CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC--------CEEEEEECccccccCCCCcchh
Confidence 45788875311 0112222122111111223333 3689999976 358899987764221 11
Q ss_pred -cCCCCCCCceeeEEEEEC--CEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 234 -TSGMVLSPRAGHSTVAFG--KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 234 -~~g~~p~~R~~hs~v~~~--~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
..... +..-.++.... +.+|+|=|. ..|+||..+..
T Consensus 166 ~~w~g~--p~~idaAf~~~~~g~~YfFkg~--------~y~~~~~~~~~ 204 (218)
T 1gen_A 166 DAWNAI--PDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 204 (218)
T ss_dssp HHSSSC--CSSCSEEEECTTTCEEEEEETT--------EEEEEETTEEE
T ss_pred hccCCC--CCCCCEEEEEcCCCcEEEEECC--------EEEEEECCcee
Confidence 01111 22233455544 789999774 37888876544
No 212
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=84.43 E-value=33 Score=33.81 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
+++.++.|+.+ ..+.+||..+.+-...- .+ ....-.+++.. ++..++.|+. ...+.++|
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~p~~~~l~s~s~-----------d~~v~iwd 193 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMIL-QG---HEQDIYSLDYFPSGDKLVSGSG-----------DRTVRIWD 193 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTSSEEEEEET-----------TSEEEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEE-cc---CCCCEEEEEEcCCCCEEEEecC-----------CCcEEEEE
Confidence 56677777754 36889999887653321 11 11111222222 3555666663 24577888
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCC-CCC-Cc-eeeEE
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM-VLS-PR-AGHST 247 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~-~p~-~R-~~hs~ 247 (535)
+.+......-.. .....+++.. ++.+++.|+.++ .+.+||+.+..-...-.... ... .. .-.++
T Consensus 194 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 194 LRTGQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp TTTTEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred CCCCeeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 887765433211 1111222222 567888887654 38889988775433221000 000 01 11122
Q ss_pred EEE-CCEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 248 VAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 248 v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
+.. ++++++.|+.+ ..+.+||+.+.
T Consensus 263 ~~~~~g~~l~s~s~d------~~v~~wd~~~~ 288 (393)
T 1erj_A 263 VFTRDGQSVVSGSLD------RSVKLWNLQNA 288 (393)
T ss_dssp EECTTSSEEEEEETT------SEEEEEEC---
T ss_pred EECCCCCEEEEEeCC------CEEEEEECCCC
Confidence 222 45677777753 24788887653
No 213
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=84.13 E-value=28 Score=32.74 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=36.3
Q ss_pred CEEEEEecCCCCCcccCceEEEECCC--CcEEEeecCCCCCCCceeeEEE-EECCEEEEEeccCCCCCccCcEEEEecC-
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVD- 276 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t--~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyv~GG~~~~~~~~~dv~~yd~~- 276 (535)
+.+++.|+.++. +.++|+.+ ..|.......... ...-.++. ..++++++.||.+. .+.+|+..
T Consensus 219 ~~~las~s~D~~------v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~------~v~lw~~~~ 285 (297)
T 2pm7_B 219 RSYMASVSQDRT------CIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDN------KVTLWKENL 285 (297)
T ss_dssp SEEEEEEETTSC------EEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTS------CEEEEEECT
T ss_pred ceEEEEEECCCc------EEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCC------cEEEEEECC
Confidence 377788876543 66777655 3455432210011 11112222 23566777777542 36666665
Q ss_pred CCcEEEEee
Q 009435 277 SGLWTKVIT 285 (535)
Q Consensus 277 ~~~W~~l~~ 285 (535)
.+.|..+..
T Consensus 286 ~g~w~~~~~ 294 (297)
T 2pm7_B 286 EGKWEPAGE 294 (297)
T ss_dssp TSCEEEC--
T ss_pred CCcEEeccc
Confidence 467887644
No 214
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=84.01 E-value=21 Score=32.59 Aligned_cols=110 Identities=9% Similarity=0.071 Sum_probs=61.0
Q ss_pred EEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeE---EEeeccCCCCCCCCceEEEE-E--CCEEEEEcCCCCCCCCCcE
Q 009435 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW---SQPVIKGSPPTPRDSHSCTT-V--GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 39 ~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W---~~l~~~g~~P~~R~~hs~~~-~--~~~Iyv~GG~~~~~~~~~~ 112 (535)
....++++|+|-| +.+|+|+..+-.- +.+... .+|..-..--++. . ++++|+|-| +..
T Consensus 75 ~~~~~~~iyfFkG--------~~~w~~~~~~~~~gyPk~I~~~-GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~y 138 (207)
T 1pex_A 75 EHPSHDLIFIFRG--------RKFWALNGYDILEGYPKKISEL-GLPKEVKKISAAVHFEDTGKTLLFSG-------NQV 138 (207)
T ss_dssp EETTTTEEEEEET--------TEEEEESTTCCCTTCSEESTTT-TCCTTCCCCCEEEECTTTSEEEEEET-------TEE
T ss_pred EeccCCcEEEEcc--------CEEEEEeCCeeccCCceecccc-CCCCCCccccEEEEeCCCCEEEEEeC-------CEE
Confidence 3433568999977 5688887432211 122211 1332111222232 2 479999987 579
Q ss_pred EEEECCCCeEEe-----cc-ccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE
Q 009435 113 HILDTSSHTWIS-----PS-VRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (535)
Q Consensus 113 ~~yd~~t~~W~~-----~~-~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~ 179 (535)
|+||..+++-.. +. .-..+| ... .++...++++|+|-| +..|+||..+.+-.
T Consensus 139 wr~d~~~~~~d~gyPr~i~~~~~Gip-~~i-DaAf~~~g~~YfFkg-------------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 139 WRYDDTNHIMDKDYPRLIEEDFPGIG-DKV-DAVYEKNGYIYFFNG-------------PIQFEYSIWSNRIV 196 (207)
T ss_dssp EEEETTTTEECSSCCCBHHHHSTTSC-SCC-SEEEEETTEEEEEET-------------TEEEEEETTTTEEE
T ss_pred EEEeCcCccccCCCCccHHHcCCCCC-CCc-cEEEEcCCcEEEEEC-------------CEEEEEeCCccEEe
Confidence 999988765321 11 011122 222 344456899999988 46788988765533
No 215
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=83.55 E-value=30 Score=32.64 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=77.7
Q ss_pred EEEEEcCC-CeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECC-CCeEEeccccCCCCCCCCCeE
Q 009435 62 VHVFDTVN-QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTS-SHTWISPSVRGEGPEAREGHS 139 (535)
Q Consensus 62 ~~~yd~~t-~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~g~~p~~r~~hs 139 (535)
+++||... ..|... .+... ..+.+..++.||+... -..+++||+. ...|.... +.+. ..+
T Consensus 80 l~~~d~~g~~~~~~~-----~~~~~-~~~~~~~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~-----~~~~-~~~ 141 (330)
T 3hxj_A 80 VYAINPDGTEKWRFD-----TKKAI-VSDFTIFEDILYVTSM------DGHLYAINTDGTEKWRFKT-----KKAI-YAT 141 (330)
T ss_dssp EEEECCCGGGGGGSC-----C------CCEEEETTEEEEECT------TSEEEEECTTSCEEEEEEC-----SSCC-CSC
T ss_pred EEEECCCCcEEEEEE-----CCCCc-ccCceEECCEEEEEec------CCEEEEEcCCCCEEEEEcC-----CCce-eee
Confidence 88888632 245431 11111 1122334888887542 1468999987 33475432 1111 222
Q ss_pred EEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCC-ccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCccc
Q 009435 140 AALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYL 216 (535)
Q Consensus 140 ~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t-~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~ 216 (535)
.+.. ++.||+... ...+++||+.. ..|..... .. ...+.+. .++.||+-.
T Consensus 142 ~~~~~~g~l~vgt~------------~~~l~~~d~~g~~~~~~~~~-----~~-~~~~~~~d~~g~l~v~t--------- 194 (330)
T 3hxj_A 142 PIVSEDGTIYVGSN------------DNYLYAINPDGTEKWRFKTN-----DA-ITSAASIGKDGTIYFGS--------- 194 (330)
T ss_dssp CEECTTSCEEEECT------------TSEEEEECTTSCEEEEEECS-----SC-CCSCCEECTTCCEEEES---------
T ss_pred eEEcCCCEEEEEcC------------CCEEEEECCCCCEeEEEecC-----CC-ceeeeEEcCCCEEEEEe---------
Confidence 3334 567776432 24688999872 23654321 11 1223333 366777643
Q ss_pred CceEEEECCC-CcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 217 SDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 217 ~~i~~yd~~t-~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
..+++||... ..|+.... .. ...+++.. ++.||+.. . ...+++||.....
T Consensus 195 ~~l~~~d~~g~~~~~~~~~-----~~-~~~~~~~~~~g~l~v~t-~------~~gl~~~~~~g~~ 246 (330)
T 3hxj_A 195 DKVYAINPDGTEKWNFYAG-----YW-TVTRPAISEDGTIYVTS-L------DGHLYAINPDGTE 246 (330)
T ss_dssp SSEEEECTTSCEEEEECCS-----SC-CCSCCEECTTSCEEEEE-T------TTEEEEECTTSCE
T ss_pred CEEEEECCCCcEEEEEccC-----Cc-ceeceEECCCCeEEEEc-C------CCeEEEECCCCCE
Confidence 3488999432 34654322 11 11222333 34676643 1 1248888875543
No 216
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=82.92 E-value=38 Score=34.94 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=80.7
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEecccc---CCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCce
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVR---GEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEV 163 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~ 163 (535)
+++.+.+++|+|=| ..+|+++.....+...... ..+|.. .. ++... ++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg----------- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG----------- 326 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET-----------
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC-----------
Confidence 45567899999987 3466666543332211111 123322 22 22222 689999988
Q ss_pred eeeeEEEEECCCc---cEEEec-cCCCCCC-CCCceeEEee-CCEEEEEecCCCCCcccCceEEEECCCCcEE-----Ee
Q 009435 164 YYNDLYILNTETF---VWKRAT-TSGNPPS-ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-----EL 232 (535)
Q Consensus 164 ~~n~v~~yd~~t~---~W~~~~-~~~~~p~-~r~~~s~~~~-~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~-----~v 232 (535)
+.+|+|+..+- -=+.+. ..+-+.. .....+.... ++++|+|-| +..|+||..+.+-. .+
T Consensus 327 --~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG--------~~yw~yd~~~~~~~~gYPk~I 396 (450)
T 1su3_A 327 --NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYPKMI 396 (450)
T ss_dssp --TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCSEEH
T ss_pred --CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC--------CEEEEEeCCCccccCCCCcch
Confidence 34667764321 011222 1111111 1222232222 689999976 45899997654321 11
Q ss_pred ecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 233 NTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 233 ~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
.. +-+-.+..--+++..++++|+|-|. ..|+||..+.+-...
T Consensus 397 ~~-~fpgip~~iDAA~~~~g~~YFFkg~--------~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 397 AH-DFPGIGHKVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRILTL 438 (450)
T ss_dssp HH-HSTTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEEEE
T ss_pred hh-cCCCCCCCccEEEEcCCeEEEEeCC--------EEEEEECCcceEecc
Confidence 10 0011122233455578999999874 389999888765543
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=81.19 E-value=62 Score=34.95 Aligned_cols=167 Identities=12% Similarity=0.067 Sum_probs=91.0
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
....++++.|++....+. ..+++|.+|..+. .|..+.. +...........++++|+....+. ....++.
T Consensus 239 ~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~--~~~~l~~ 309 (693)
T 3iuj_A 239 ATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDA--PNRRLVT 309 (693)
T ss_dssp EEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTC--TTCEEEE
T ss_pred EEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCC--CCCEEEE
Confidence 334456666655433221 2368999998765 7887651 111112223455889999876532 3457999
Q ss_pred EECCCC---eEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 115 LDTSSH---TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 115 yd~~t~---~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
+|+.+. .|+.+... ... .. .....++.|++..-.+ -...++++|+.....+.+. .|...
T Consensus 310 ~d~~~~~~~~~~~l~~~--~~~--~~-~~s~~g~~lv~~~~~~---------g~~~l~~~d~~g~~~~~l~----~p~~~ 371 (693)
T 3iuj_A 310 VDAANPGPAHWRDLIPE--RQQ--VL-TVHSGSGYLFAEYMVD---------ATARVEQFDYEGKRVREVA----LPGLG 371 (693)
T ss_dssp EETTSCCGGGCEEEECC--CSS--CE-EEEEETTEEEEEEEET---------TEEEEEEECTTSCEEEEEC----CSSSS
T ss_pred EeCCCCCccccEEEecC--CCC--EE-EEEEECCEEEEEEEEC---------CeeEEEEEECCCCeeEEee----cCCCc
Confidence 998764 37765421 111 11 4445566665543210 1457899998876666654 12111
Q ss_pred CceeEEe-e-CCEEEEE-ecCCCCCcccCceEEEECCCCcEEEeec
Q 009435 192 DSHTCSS-W-KNKIIVI-GGEDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 192 ~~~s~~~-~-~~~lyv~-GG~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
....... . ++.|++. .+.. .-..++.||+.+.+++.+..
T Consensus 372 ~~~~~~~~~d~~~l~~~~ss~~----tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 372 SVSGFNGKHDDPALYFGFENYA----QPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EEEECCCCTTCSCEEEEEECSS----SCCEEEEECTTTCCEEEEEC
T ss_pred eEEeeecCCCCCEEEEEecCCC----CCCEEEEEECCCCeEEEEEe
Confidence 1111111 1 2334433 2322 23569999999998888775
No 218
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=80.61 E-value=56 Score=33.68 Aligned_cols=173 Identities=9% Similarity=0.059 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeE-EEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHS-AAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs-~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~y 171 (535)
+++.++.|+.+ ..+.+||.....-..+.. . ..... ++. .+++.++.|+.+ ..+.+|
T Consensus 355 ~g~~l~~~~~d-----g~v~~~~~~~~~~~~~~~---~---~~~v~~~~~s~dg~~l~~~~~d-----------~~v~~~ 412 (577)
T 2ymu_A 355 DGQTIASASDD-----KTVKLWNRNGQLLQTLTG---H---SSSVRGVAFSPDGQTIASASDD-----------KTVKLW 412 (577)
T ss_dssp TSSEEEEEETT-----SEEEEEETTCCEEEEEEC---C---SSCEEEEEECTTSSCEEEEETT-----------SEEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEcCCCCEEEEecC---C---CCCeEEEEECCCCCEEEEEeCC-----------CEEEEE
Confidence 45666666643 347777865544333221 1 11111 222 245566666631 346677
Q ss_pred ECCCccEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE
Q 009435 172 NTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF 250 (535)
Q Consensus 172 d~~t~~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~ 250 (535)
|.....-..+.. .... -.+++. .++++++.++.++ .+.+||.....-..+... .......+..-
T Consensus 413 ~~~~~~~~~~~~----~~~~-v~~~~~s~d~~~l~~~~~d~------~v~~w~~~~~~~~~~~~~----~~~v~~~~~sp 477 (577)
T 2ymu_A 413 NRNGQLLQTLTG----HSSS-VWGVAFSPDDQTIASASDDK------TVKLWNRNGQLLQTLTGH----SSSVRGVAFSP 477 (577)
T ss_dssp CTTCCEEEEEEC----CSSC-EEEEEECTTSSEEEEEETTS------EEEEEETTSCEEEEEECC----SSCEEEEEECT
T ss_pred eCCCCEEEEecC----CCCC-eEEEEECCCCCEEEEEcCCC------EEEEEECCCCEEEEEcCC----CCCEEEEEEcC
Confidence 755443333321 1111 112222 2566777776543 377888766555444321 11111122223
Q ss_pred CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
++++++.|+.+ ..|.+||.....-..+... .......++ ..++.+++.|+.+.
T Consensus 478 d~~~las~~~d------~~i~iw~~~~~~~~~~~~h------~~~v~~l~~--s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 478 DGQTIASASDD------KTVKLWNRNGQLLQTLTGH------SSSVRGVAF--SPDGQTIASASDDK 530 (577)
T ss_dssp TSCEEEEEETT------SEEEEEETTSCEEEEEECC------SSCEEEEEE--CTTSSCEEEEETTS
T ss_pred CCCEEEEEeCC------CEEEEEcCCCCEEEEEeCC------CCCEEEEEE--cCCCCEEEEEECcC
Confidence 56777777653 2478888654433333221 111222223 34666777777554
No 219
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=80.54 E-value=48 Score=32.89 Aligned_cols=120 Identities=11% Similarity=-0.004 Sum_probs=60.0
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCC----CCCCcEEEE
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGM----NPLRDLHIL 115 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~----~~~~~~~~y 115 (535)
.+++.+|+.-+..... . ..+++||+.+++-.. .+|.....+-+..- +..+|+..-.... ...+.+.+|
T Consensus 30 ~~~~~~yv~~~~~~~~-~-~~v~v~D~~t~~~~~-----~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 30 ADGRRSYINLPAHHSA-I-IQQWVLDAGSGSILG-----HVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCEEEEeCCcccCC-c-cEEEEEECCCCeEEE-----EecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 4567788875421111 1 178999998876432 33333332222222 4568887532111 124678899
Q ss_pred ECCCCeEE-eccccCC-----CCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE
Q 009435 116 DTSSHTWI-SPSVRGE-----GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (535)
Q Consensus 116 d~~t~~W~-~~~~~g~-----~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~ 179 (535)
|+.+.+-. .++..+. ...|+ +......+..||+..-. ..+.+.++| .+.+-.
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~~l~v~n~~----------~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQFA----------AGPAVGLVV-QGGSSD 160 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCcc-ceEECCCCCEEEEEecC----------CCCeEEEEE-CCCCEE
Confidence 99875432 2221100 01122 22222234567776321 135688888 776543
No 220
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=80.45 E-value=57 Score=33.71 Aligned_cols=143 Identities=12% Similarity=0.072 Sum_probs=74.5
Q ss_pred CEEEEEcCC-CCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEE
Q 009435 95 ENLYVFGGT-DGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYIL 171 (535)
Q Consensus 95 ~~Iyv~GG~-~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~y 171 (535)
++.++.|+. + ..+.+||..+..... . ...........+.. ++++++.|+. ...+.+|
T Consensus 456 ~~~l~~~~~~d-----~~i~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~g~~l~~~~~-----------dg~i~iw 515 (615)
T 1pgu_A 456 QNYVAVGLEEG-----NTIQVFKLSDLEVSF-D---LKTPLRAKPSYISISPSETYIAAGDV-----------MGKILLY 515 (615)
T ss_dssp SSEEEEEETTT-----SCEEEEETTEEEEEE-E---CSSCCSSCEEEEEECTTSSEEEEEET-----------TSCEEEE
T ss_pred CCEEEEeecCC-----CeEEEEECCCccccc-c---ccCCccCceEEEEECCCCCEEEEcCC-----------CCeEEEe
Confidence 556666654 3 468999998876542 1 11111222223333 5677777773 2457888
Q ss_pred ECCCccEEEeccCCCCCCCCCceeEEe-e----------CCEEEEEecCCCCCcccCceEEEECCCC-c-EEEeecCCCC
Q 009435 172 NTETFVWKRATTSGNPPSARDSHTCSS-W----------KNKIIVIGGEDGHDYYLSDVHILDTDTL-T-WKELNTSGMV 238 (535)
Q Consensus 172 d~~t~~W~~~~~~~~~p~~r~~~s~~~-~----------~~~lyv~GG~~~~~~~~~~i~~yd~~t~-~-W~~v~~~g~~ 238 (535)
|+.+.+-...- . ......-.+++. - ++.+++.|+.++ .+.+||+.+. + ...+..
T Consensus 516 ~~~~~~~~~~~-~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~---- 582 (615)
T 1pgu_A 516 DLQSREVKTSR-W--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT------NIFIYSVKRPMKIIKALNA---- 582 (615)
T ss_dssp ETTTTEEEECC-S--CCCSSCEEEEEECCCC------CCSCCEEEEEETTS------CEEEEESSCTTCCEEETTS----
T ss_pred eCCCCcceeEe-e--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCC------cEEEEECCCCceechhhhc----
Confidence 98776543321 0 001111112222 2 567888887654 4889999875 2 222211
Q ss_pred CCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 239 LSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 239 p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
........+..-++. ++.+|.+. .+.+||+++
T Consensus 583 h~~~v~~l~~s~~~~-l~s~~~d~------~v~iw~~~~ 614 (615)
T 1pgu_A 583 HKDGVNNLLWETPST-LVSSGADA------CIKRWNVVL 614 (615)
T ss_dssp STTCEEEEEEEETTE-EEEEETTS------CEEEEEEC-
T ss_pred CccceEEEEEcCCCC-eEEecCCc------eEEEEeeec
Confidence 112222334445777 77777543 377777654
No 221
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=79.39 E-value=38 Score=34.30 Aligned_cols=187 Identities=16% Similarity=0.246 Sum_probs=100.1
Q ss_pred CCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEE-----CCCccEEEeccCCCCCCCCCc
Q 009435 119 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILN-----TETFVWKRATTSGNPPSARDS 193 (535)
Q Consensus 119 t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd-----~~t~~W~~~~~~~~~p~~r~~ 193 (535)
.+.|++.+. +..|....-|+.+.+++.-|.+|=...+. ...-. .+..|. +....=+.+.. .....-..
T Consensus 269 ~spW~~t~L-~~i~~vTe~HSFa~i~~~~fa~GyHnGDv---~PRe~-G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsE 341 (670)
T 3ju4_A 269 KSPWRKTDL-GLIPSVTEVHSFATIDNNGFAMGYHQGDV---APREV-GLFYFPDAFNSPSNYVRRQIPS--EYEPDASE 341 (670)
T ss_dssp TSCCEEEEC-CSCTTCSEEEEEEECSSSCEEEEEEECSS---SSCEE-EEEEETTTTTCTTCCEEEECCG--GGCTTEEE
T ss_pred cCCceeccc-ccccceeeeeeeeEecCCceEEEeccCCC---Cccee-eEEEecccccCCcceeeeechh--hhcccccc
Confidence 466776543 35667777899999998888887422111 11111 122221 11122222221 12222334
Q ss_pred eeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCC--------
Q 009435 194 HTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN-------- 265 (535)
Q Consensus 194 ~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~-------- 265 (535)
.++-.+++.||+.--.......-..+++-+.....|..+..... ......-.+.++|.||+||-....++
T Consensus 342 PCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~n--vHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~ 419 (670)
T 3ju4_A 342 PCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHN--VHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDD 419 (670)
T ss_dssp EEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTC--CCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCC
T ss_pred chhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheecccc--ccccCCCcceeCCEEEEEeccccccccccCCCcc
Confidence 45566799999875333222345668888888899999985211 11112236788999999996432111
Q ss_pred ----ccCcEE--EE-----ecCCCcEEEEeeC---CCCCCCceeeeeeeecccCCCEE-EEEcccCC
Q 009435 266 ----LYDDLY--MI-----DVDSGLWTKVITT---GEGPSARFSVAGDCLDPLKGGVL-VFIGGCNK 317 (535)
Q Consensus 266 ----~~~dv~--~y-----d~~~~~W~~l~~~---~~~p~~r~~~~~~~~~~~~~~~l-~v~GG~~~ 317 (535)
.+...+ +. ..++-+|..+... +.....-.+..++|+ .++.| |+|||.+.
T Consensus 420 RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~v---KD~~lyyiFGgEd~ 483 (670)
T 3ju4_A 420 RYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVV---KDNYIYYMFGGEDH 483 (670)
T ss_dssp CSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEE---ETTEEEEEEEEBCS
T ss_pred cccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEE---eCCEEEEEecCccc
Confidence 112222 22 2345567777653 333444455555554 57775 56888753
No 222
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=78.65 E-value=19 Score=34.47 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=20.6
Q ss_pred CCEEEEEeccCCCCCccCcEEEEecC-CCcEEEEeeCC
Q 009435 251 GKNLFVFGGFTDSQNLYDDLYMIDVD-SGLWTKVITTG 287 (535)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~-~~~W~~l~~~~ 287 (535)
++.+++.||.+. .+.+|+.. .+.|..+....
T Consensus 273 ~g~~las~~~D~------~v~lw~~~~~g~~~~~~~~~ 304 (316)
T 3bg1_A 273 TANILAVSGGDN------KVTLWKESVDGQWVCISDVN 304 (316)
T ss_dssp TTCCEEEEESSS------CEEEEEECTTSCEEEEEECC
T ss_pred CCCEEEEEcCCC------eEEEEEECCCCcEEEeeecc
Confidence 466777777543 37777764 56898887653
No 223
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=78.41 E-value=23 Score=32.69 Aligned_cols=112 Identities=9% Similarity=0.142 Sum_probs=60.5
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCe--E-EEeeccCCCCCC-CCceEEEE--ECCEEEEEcCCCCCCCCC
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT--W-SQPVIKGSPPTP-RDSHSCTT--VGENLYVFGGTDGMNPLR 110 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~--W-~~l~~~g~~P~~-R~~hs~~~--~~~~Iyv~GG~~~~~~~~ 110 (535)
++....++++|+|-| +.+|+||..+.. + +.+..- ..|.. ..-.++.. .++++|+|-| +
T Consensus 81 A~~~~~~~k~yfFkG--------~~yW~y~~~~~~~gyPk~I~~~-g~p~~~~~IDAAf~~~~~g~~YfFkG-------~ 144 (218)
T 1gen_A 81 VYEAPQEEKAVFFAG--------NEYWIYSASTLERGYPKPLTSL-GLPPDVQRVDAAFNWSKNKKTYIFAG-------D 144 (218)
T ss_dssp EEEETTTTEEEEEET--------TEEEEEETTEECTTCSEEGGGG-TCCTTCCCCSEEEEETTTTEEEEEET-------T
T ss_pred EEEECCCCEEEEEeC--------CEEEEEcCccccCCCCccHhhc-CCCCCcCCccEEEEEcCCCeEEEEEC-------C
Confidence 333445678999977 578999853110 0 011110 12221 12233333 2689999987 5
Q ss_pred cEEEEECCCCeEEec---ccc-CCCCCCCCCeEEEEEC--CEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc
Q 009435 111 DLHILDTSSHTWISP---SVR-GEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (535)
Q Consensus 111 ~~~~yd~~t~~W~~~---~~~-g~~p~~r~~hs~~~~~--~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~ 177 (535)
..|+||..+++-..- ... .=+..|..-.++.... +.+|+|-| +..|+||..+..
T Consensus 145 ~ywr~d~~~~~v~~gyPr~i~~~w~g~p~~idaAf~~~~~g~~YfFkg-------------~~y~~~~~~~~~ 204 (218)
T 1gen_A 145 KFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG-------------AYYLKLENQSLK 204 (218)
T ss_dssp EEEEEETTTTEECSSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEET-------------TEEEEEETTEEE
T ss_pred EEEEEECccccccCCCCcchhhccCCCCCCCCEEEEEcCCCcEEEEEC-------------CEEEEEECCcee
Confidence 799999887653211 000 0011222233444444 79999988 457888876544
No 224
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=78.39 E-value=53 Score=32.10 Aligned_cols=203 Identities=8% Similarity=0.043 Sum_probs=94.8
Q ss_pred EEEE-cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEE
Q 009435 37 CNAI-KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHI 114 (535)
Q Consensus 37 ~~~v-~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~ 114 (535)
++++ ++++.+.+.+|.. ...+.++|+.+.+-.... ... . .-.+++.- ++++++.|+. +.+.+
T Consensus 138 ~v~fSpDg~~la~as~~~-----d~~i~iwd~~~~~~~~~~-~~~--~--~V~~v~fspdg~~l~s~s~------~~~~~ 201 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKV-----PAIMRIIDPSDLTEKFEI-ETR--G--EVKDLHFSTDGKVVAYITG------SSLEV 201 (365)
T ss_dssp EEEECTTSSCEEEEESCS-----SCEEEEEETTTTEEEEEE-ECS--S--CCCEEEECTTSSEEEEECS------SCEEE
T ss_pred EEEEcCCCCEEEEEECCC-----CCEEEEeECCCCcEEEEe-CCC--C--ceEEEEEccCCceEEeccc------eeEEE
Confidence 3444 4555454544422 145888999887655422 111 1 11222222 5566666642 45778
Q ss_pred EECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 115 LDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 115 yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
++..+......... ..............++..++.++.+.. ....++.+|....................-.
T Consensus 202 ~~~~~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~~s~d~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~ 273 (365)
T 4h5i_A 202 ISTVTGSCIARKTD-FDKNWSLSKINFIADDTVLIAASLKKG-------KGIVLTKISIKSGNTSVLRSKQVTNRFKGIT 273 (365)
T ss_dssp EETTTCCEEEEECC-CCTTEEEEEEEEEETTEEEEEEEESSS-------CCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred EEeccCcceeeeec-CCCCCCEEEEEEcCCCCEEEEEecCCc-------ceeEEeecccccceecceeeeeecCCCCCeE
Confidence 88777665432211 001111111223346777777663211 1123555666555443322100000001111
Q ss_pred eEE-eeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEE
Q 009435 195 TCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 195 s~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
+++ .-++++++.|+.++ .+.+||..+.+-...-..+ ........+..-++++++.|+.+. .|.++
T Consensus 274 ~~~~Spdg~~lasgs~D~------~V~iwd~~~~~~~~~~~~g--H~~~V~~v~fSpdg~~laS~S~D~------tvrvw 339 (365)
T 4h5i_A 274 SMDVDMKGELAVLASNDN------SIALVKLKDLSMSKIFKQA--HSFAITEVTISPDSTYVASVSAAN------TIHII 339 (365)
T ss_dssp EEEECTTSCEEEEEETTS------CEEEEETTTTEEEEEETTS--SSSCEEEEEECTTSCEEEEEETTS------EEEEE
T ss_pred eEEECCCCCceEEEcCCC------EEEEEECCCCcEEEEecCc--ccCCEEEEEECCCCCEEEEEeCCC------eEEEE
Confidence 222 23778888888654 3889999887533211111 111111112223567777777542 47788
Q ss_pred ecCC
Q 009435 274 DVDS 277 (535)
Q Consensus 274 d~~~ 277 (535)
|+..
T Consensus 340 ~ip~ 343 (365)
T 4h5i_A 340 KLPL 343 (365)
T ss_dssp ECCT
T ss_pred EcCC
Confidence 8754
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=78.30 E-value=34 Score=32.41 Aligned_cols=104 Identities=9% Similarity=0.071 Sum_probs=53.8
Q ss_pred cceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CC-EEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCC
Q 009435 59 TNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GE-NLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEARE 136 (535)
Q Consensus 59 ~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~ 136 (535)
...+++||+.++++..+. ... .-.+.+.. ++ .||+..........+.+++||+..............+...
T Consensus 168 ~~~v~~~d~~~g~~~~~~-~~~-----~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~- 240 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA-DLD-----HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL- 240 (305)
T ss_dssp CEEEEEECSSSCCCEEEE-EES-----SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC-
T ss_pred CCeEEEEcCCCCcEEEEe-cCC-----CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC-
Confidence 357999999888877653 111 11233333 33 5777753221112357999998765432211110111111
Q ss_pred CeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 137 GHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 137 ~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
-..++. .+++||+..+ +.|++||+.......+.
T Consensus 241 pdgi~~d~~G~lwv~~~-------------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 241 PDGFCVDRGGWLWSSSG-------------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp CCSEEECTTSCEEECCS-------------SEEEEECTTSCEEEEEE
T ss_pred CCeEEECCCCCEEEecC-------------CcEEEECCCCCEEEEEE
Confidence 112332 2467777543 34899999776666665
No 226
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=78.26 E-value=51 Score=31.87 Aligned_cols=154 Identities=10% Similarity=-0.032 Sum_probs=77.4
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~ 189 (535)
..+|++|+.+.+...+.. .+...........+++.+++... ...++++|+.+.+-..+.. .+.
T Consensus 60 ~~l~~~d~~~g~~~~lt~---~~~~~~~~~~~spdg~~l~~~~~-----------~~~l~~~d~~~g~~~~~~~---~~~ 122 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTE---GRGDNTFGGFLSPDDDALFYVKD-----------GRNLMRVDLATLEENVVYQ---VPA 122 (388)
T ss_dssp CEEEEEETTTCEEEECCC---SSCBCSSSCEECTTSSEEEEEET-----------TTEEEEEETTTCCEEEEEE---CCT
T ss_pred ceEEEEeCCCCceEEeee---CCCCCccceEEcCCCCEEEEEeC-----------CCeEEEEECCCCcceeeee---chh
Confidence 479999999988776542 22111111223334444444331 1368899998887665542 122
Q ss_pred CCCceeEE--eeCCEEEEEecCCC----------------CCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-
Q 009435 190 ARDSHTCS--SWKNKIIVIGGEDG----------------HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF- 250 (535)
Q Consensus 190 ~r~~~s~~--~~~~~lyv~GG~~~----------------~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~- 250 (535)
........ ..++++++.--... .......++++|+.+.+-+.+... .....+....-
T Consensus 123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~sp~ 198 (388)
T 3pe7_A 123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE----NQWLGHPIYRPY 198 (388)
T ss_dssp TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE----SSCEEEEEEETT
T ss_pred hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC----CccccccEECCC
Confidence 11111111 12333332110000 001235799999999887766531 12233333443
Q ss_pred CCEEEEEeccCCCCCccCcEEEEecCCCcEEEEe
Q 009435 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (535)
+++.+++............||++|+.......+.
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred CCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 4554444433222223457999999887766554
No 227
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=77.31 E-value=50 Score=31.30 Aligned_cols=208 Identities=10% Similarity=0.041 Sum_probs=101.3
Q ss_pred CCcccccceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCC
Q 009435 28 GPGKRWGHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGM 106 (535)
Q Consensus 28 ~P~~R~gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~ 106 (535)
.|.+...+..+...++ .||+.-- ....+++||+....-.... .+ ..-++.+.. ++++|+......
T Consensus 28 ~p~~~~pegia~~~~g-~lyv~d~------~~~~I~~~d~~g~~~~~~~-~~-----~~p~gia~~~dG~l~vad~~~~- 93 (306)
T 2p4o_A 28 FPVNTFLENLASAPDG-TIFVTNH------EVGEIVSITPDGNQQIHAT-VE-----GKVSGLAFTSNGDLVATGWNAD- 93 (306)
T ss_dssp ECTTCCEEEEEECTTS-CEEEEET------TTTEEEEECTTCCEEEEEE-CS-----SEEEEEEECTTSCEEEEEECTT-
T ss_pred CCCCCCcceEEECCCC-CEEEEeC------CCCeEEEECCCCceEEEEe-CC-----CCceeEEEcCCCcEEEEeccCC-
Confidence 3444444544444544 4888632 1246899998765322222 11 122333333 567888753211
Q ss_pred CCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc---EEEec
Q 009435 107 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRAT 182 (535)
Q Consensus 107 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~---W~~~~ 182 (535)
...+++||..+.+.+.+.. .+..+.....+.. ++.+|+.-- ....+|++|+.+.. |..-.
T Consensus 94 --~~~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~-----------~~g~i~~~d~~~~~~~v~~~~~ 157 (306)
T 2p4o_A 94 --SIPVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS-----------YRGAIWLIDVVQPSGSIWLEHP 157 (306)
T ss_dssp --SCEEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET-----------TTTEEEEEETTTTEEEEEEECG
T ss_pred --cceEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC-----------CCCeEEEEeCCCCcEeEEEECC
Confidence 1248889988887765442 2333443344333 355677532 02468999987642 21111
Q ss_pred cCC-CCCCC--CCceeEEeeCCEEEEEecCCCCCcccCceEEEECCC-CcE---EEeecCCCCCCCceeeEEEEECCEEE
Q 009435 183 TSG-NPPSA--RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTW---KELNTSGMVLSPRAGHSTVAFGKNLF 255 (535)
Q Consensus 183 ~~~-~~p~~--r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W---~~v~~~g~~p~~R~~hs~v~~~~~iy 255 (535)
... ..+.. .....+...++.||+.-- ..+.+++||+.. .+. +.+.. ...| ...++.-++++|
T Consensus 158 ~~~~~~~~~~~~~pngis~dg~~lyv~d~------~~~~I~~~~~~~~g~~~~~~~~~~---~~~P--~gi~vd~dG~l~ 226 (306)
T 2p4o_A 158 MLARSNSESVFPAANGLKRFGNFLYVSNT------EKMLLLRIPVDSTDKPGEPEIFVE---QTNI--DDFAFDVEGNLY 226 (306)
T ss_dssp GGSCSSTTCCSCSEEEEEEETTEEEEEET------TTTEEEEEEBCTTSCBCCCEEEEE---SCCC--SSEEEBTTCCEE
T ss_pred ccccccccCCCCcCCCcCcCCCEEEEEeC------CCCEEEEEEeCCCCCCCccEEEec---cCCC--CCeEECCCCCEE
Confidence 000 00111 111223333567888642 235689999864 221 11111 1111 112223356788
Q ss_pred EEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 256 VFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 256 v~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
|.-.. .+.|.+||+. ++...+
T Consensus 227 va~~~------~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 227 GATHI------YNSVVRIAPD-RSTTII 247 (306)
T ss_dssp EECBT------TCCEEEECTT-CCEEEE
T ss_pred EEeCC------CCeEEEECCC-CCEEEE
Confidence 76542 2459999986 444443
No 228
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=76.97 E-value=61 Score=32.10 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=39.9
Q ss_pred CCEEEEEecCCCC---CcccCceEEEECCCCcE-EEeecCCCCCCCceeeEEE-EECCE-EEEEeccCCCCCccCcEEEE
Q 009435 200 KNKIIVIGGEDGH---DYYLSDVHILDTDTLTW-KELNTSGMVLSPRAGHSTV-AFGKN-LFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 200 ~~~lyv~GG~~~~---~~~~~~i~~yd~~t~~W-~~v~~~g~~p~~R~~hs~v-~~~~~-iyv~GG~~~~~~~~~dv~~y 273 (535)
++++|+....... ....++++++|+++.+- ..+.. +..-+.+. .-+++ +++..... .++|.++
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~~p~~i~~s~Dg~~~l~v~~~~-----~~~V~Vi 346 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAISVAQDGGPDLYALSAG-----TEVLHIY 346 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC------CCCcCeEEECCCCCeEEEEEcCC-----CCeEEEE
Confidence 5789987542211 12356899999998765 33322 22223333 33444 44443322 2569999
Q ss_pred ecCCCcEEE
Q 009435 274 DVDSGLWTK 282 (535)
Q Consensus 274 d~~~~~W~~ 282 (535)
|..+.+-..
T Consensus 347 D~~t~~vv~ 355 (373)
T 2mad_H 347 DAGAGDQDQ 355 (373)
T ss_pred ECCCCCEEe
Confidence 988865443
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=76.36 E-value=48 Score=30.55 Aligned_cols=200 Identities=6% Similarity=-0.038 Sum_probs=107.8
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcE
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~ 112 (535)
|..+...+++.||+.-.. .+.++++++....-..+. .... ..-++.+.. +++||+.-.. .+.+
T Consensus 39 ~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~-~~~~---~~p~~ia~d~~~~~lyv~d~~-----~~~I 103 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTII-RQDL---GSPEGIALDHLGRTIFWTDSQ-----LDRI 103 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEE-CTTC---CCEEEEEEETTTTEEEEEETT-----TTEE
T ss_pred EEEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEE-ECCC---CCccEEEEEecCCeEEEEECC-----CCEE
Confidence 444455556789886431 257999998776433332 1111 122344443 5789988542 3578
Q ss_pred EEEECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCC
Q 009435 113 HILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 190 (535)
Q Consensus 113 ~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~ 190 (535)
+++|+....-+.+... ....| ..++.. +++||+..... ..+.+++++++...-+.+... ..
T Consensus 104 ~~~~~~g~~~~~~~~~-~~~~P---~~i~vd~~~g~lyv~~~~~---------~~~~I~~~~~dg~~~~~~~~~-~~--- 166 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDT-GLVNP---RGIVTDPVRGNLYWTDWNR---------DNPKIETSHMDGTNRRILAQD-NL--- 166 (267)
T ss_dssp EEEETTSCSCEEEECS-SCSSE---EEEEEETTTTEEEEEECCS---------SSCEEEEEETTSCCCEEEECT-TC---
T ss_pred EEEEcCCCCEEEEEEC-CCCCc---cEEEEeeCCCEEEEEECCC---------CCcEEEEEecCCCCcEEEEEC-CC---
Confidence 9999875432222111 11111 234443 57899875310 124678888765443333211 11
Q ss_pred CCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccC
Q 009435 191 RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 268 (535)
Q Consensus 191 r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~ 268 (535)
..-..+++- ++.||+.--. .+.|+++|+.+..-..+... ...| ..++..++.+|+.... .+
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~--~~~P---~gi~~d~~~lyva~~~------~~ 229 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAG------THRAECLNPAQPGRRKVLEG--LQYP---FAVTSYGKNLYYTDWK------TN 229 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETT------TTEEEEEETTEEEEEEEEEC--CCSE---EEEEEETTEEEEEETT------TT
T ss_pred CCCcEEEEcCCCCEEEEEECC------CCEEEEEecCCCceEEEecC--CCCc---eEEEEeCCEEEEEECC------CC
Confidence 112334433 5789887532 35699999986543333221 1122 3445568899996543 24
Q ss_pred cEEEEecCCCcEEEE
Q 009435 269 DLYMIDVDSGLWTKV 283 (535)
Q Consensus 269 dv~~yd~~~~~W~~l 283 (535)
.|+++|+.+++-...
T Consensus 230 ~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 230 SVIAMDLAISKEMDT 244 (267)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCCceEE
Confidence 599999987765433
No 230
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=76.30 E-value=54 Score=32.69 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCc----EEEeecCCCCCCCceeeEEEEE---CCEEEEEeccCCCCCccCcEEE
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLT----WKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~----W~~v~~~g~~p~~R~~hs~v~~---~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
++.+++.|+.+ ..+.+||+.+.. -..+.. ......++.. +..+++.|+.. ..|.+
T Consensus 243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~i~~~p~~~~~l~tg~~d------g~v~v 304 (430)
T 2xyi_A 243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVDA------HTAEVNCLSFNPYSEFILATGSAD------KTVAL 304 (430)
T ss_dssp CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEEC------CSSCEEEEEECSSCTTEEEEEETT------SEEEE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCCCCcceeEeec------CCCCeEEEEeCCCCCCEEEEEeCC------CeEEE
Confidence 45677777654 348899987652 112211 0111122222 23478888764 34889
Q ss_pred EecCC
Q 009435 273 IDVDS 277 (535)
Q Consensus 273 yd~~~ 277 (535)
||+.+
T Consensus 305 wd~~~ 309 (430)
T 2xyi_A 305 WDLRN 309 (430)
T ss_dssp EETTC
T ss_pred EeCCC
Confidence 99876
No 231
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=75.74 E-value=67 Score=31.99 Aligned_cols=155 Identities=13% Similarity=0.088 Sum_probs=79.8
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeE--Eecccc-CCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCcee
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTW--ISPSVR-GEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVY 164 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~-g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~ 164 (535)
+++.+++++|+|=| +.+|+++.....- ..+... ..+| .....+... .++++|+|-|
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP-~~iDAa~~~~~~g~~~fFkg------------ 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLP-SGIEAAYEIEARNQVFLFKD------------ 244 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCC-SSCCEEEEEGGGTEEEEEET------------
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCC-CCccEEEEecCCCEEEEEeC------------
Confidence 34557899999976 3566665433211 111111 1233 223332222 2689999987
Q ss_pred eeeEEEEECCCcc--E-EEeccCCCCCCC--CCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecC--
Q 009435 165 YNDLYILNTETFV--W-KRATTSGNPPSA--RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-- 235 (535)
Q Consensus 165 ~n~v~~yd~~t~~--W-~~~~~~~~~p~~--r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~-- 235 (535)
+.+|+|+..... + +.+...| .|.. ... ++... ++++|+|-| +..|+||..+.+-..--+.
T Consensus 245 -~~yWr~~~~~~~~gyPk~I~~~G-lP~~~~~ID-AA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyPk~I 313 (365)
T 3ba0_A 245 -DKYWLISNLRPEPNYPKSIHSFG-FPNFVKKID-AAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYPKLI 313 (365)
T ss_dssp -TEEEECSTTSCTTTCSEETTTTT-CCTTCCCCC-EEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCCCH
T ss_pred -CEEEEEcCCcccCCCCceeeecc-CCCCCCCcC-EEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCCcch
Confidence 346677643211 1 1232211 2221 222 23333 589999966 4589999876532110000
Q ss_pred --CCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCCcEEE
Q 009435 236 --GMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 236 --g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (535)
+-+..+..-.+++.. ++++|+|=|. ..|+||..+.+-..
T Consensus 314 ~~~f~g~p~~iDaA~~~~~g~~YfFkg~--------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 314 TKNFQGIGPKIDAVFYSKNKYYYFFQGS--------NQFEYDFLLQRITK 355 (365)
T ss_dssp HHHSTTCCSSCSEEEEETTTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred hhcCCCCCCccceeeEecCCcEEEEeCC--------EEEEEECCccEEec
Confidence 001112223344445 7889999773 38999998877655
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=75.64 E-value=0.9 Score=45.68 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=31.1
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~ 113 (535)
++.++. ++.||+.+. + ..++++|..++ .|+.-. +. ...+.+..++++|+.++.+ ..++
T Consensus 3 ssP~v~-~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~--~~-----~~s~p~~~~g~~~v~~s~d-----g~l~ 62 (369)
T 2hz6_A 3 STVTLP-ETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE--DP-----VLQVPTHVEEPAFLPDPND-----GSLY 62 (369)
T ss_dssp -----C-TTEEEEEET-T------SEEEEEETTTCCEEEEEEC--CC-----SCCCC-----CCEEECTTT-----CCEE
T ss_pred CCCeee-CCEEEEEcC-C------CEEEEEECCCCCEEEEecC--CC-----ceecceEcCCCEEEEeCCC-----CEEE
Confidence 344453 455665432 2 36999998775 677632 11 1122234467788886543 3589
Q ss_pred EEECCCC--eEEe
Q 009435 114 ILDTSSH--TWIS 124 (535)
Q Consensus 114 ~yd~~t~--~W~~ 124 (535)
++|..++ .|+.
T Consensus 63 a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 63 TLGSKNNEGLTKL 75 (369)
T ss_dssp EC-----CCSEEC
T ss_pred EEECCCCceeeee
Confidence 9998664 4653
No 233
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=74.26 E-value=83 Score=32.34 Aligned_cols=149 Identities=9% Similarity=0.022 Sum_probs=79.1
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccC---CCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEEC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKG---SPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDT 117 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g---~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~ 117 (535)
++.+|+|=| +.+|+++.....+....+.. .+|.. --++... ++++|+|=| +.+|+|+.
T Consensus 272 ~ge~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg-------~~~W~~~~ 334 (450)
T 1su3_A 272 RGEVMFFKD--------RFYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG-------NKYWAVQG 334 (450)
T ss_dssp TTEEEEEET--------TEEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET-------TEEEEEET
T ss_pred CCeEEEEeC--------CEEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeC-------CEEEEecC
Confidence 457999876 45777776554444322222 22322 1223332 689999977 46888874
Q ss_pred CCCe--E-Eecc-ccCCCCC--CCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE-----EeccCC
Q 009435 118 SSHT--W-ISPS-VRGEGPE--AREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-----RATTSG 185 (535)
Q Consensus 118 ~t~~--W-~~~~-~~g~~p~--~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~-----~~~~~~ 185 (535)
.+-. + +.+. ..| .|. .....+.... ++++|+|-| +..|+||..+.+-. .+...
T Consensus 335 ~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG-------------~~yw~yd~~~~~~~~gYPk~I~~~- 399 (450)
T 1su3_A 335 QNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------------NKYWRYDEYKRSMDPGYPKMIAHD- 399 (450)
T ss_dssp TEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------------TEEEEEETTTTEECSSCSEEHHHH-
T ss_pred CcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC-------------CEEEEEeCCCccccCCCCcchhhc-
Confidence 3210 0 1111 111 222 1222332222 489999988 56889987654321 22110
Q ss_pred CCCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEE
Q 009435 186 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE 231 (535)
Q Consensus 186 ~~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~ 231 (535)
-+..+..--++...++++|+|-| +..|+||..+.+-..
T Consensus 400 fpgip~~iDAA~~~~g~~YFFkg--------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 400 FPGIGHKVDAVFMKDGFFYFFHG--------TRQYKFDPKTKRILT 437 (450)
T ss_dssp STTSCSCCSEEEEETTEEEEEET--------TEEEEEETTTTEEEE
T ss_pred CCCCCCCccEEEEcCCeEEEEeC--------CEEEEEECCcceEec
Confidence 01112222344456899999976 357899988776554
No 234
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=74.22 E-value=61 Score=30.75 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=96.8
Q ss_pred EcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCE-EEEEcCC-------------
Q 009435 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GEN-LYVFGGT------------- 103 (535)
Q Consensus 40 v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~-Iyv~GG~------------- 103 (535)
.++++.|+........ ....+|++|..+++...+... +. ...... +++ |++....
T Consensus 67 SpDg~~la~~~~~~~~--~~~~l~~~~~~~g~~~~l~~~---~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 67 SPDGKKIAFMRANEEK--KVSEIWVADLETLSSKKILEA---KN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp CTTSSEEEEEEEETTT--TEEEEEEEETTTTEEEEEEEE---SE----EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred CCCCCEEEEEEeccCC--CcceEEEEECCCCceEEEEcC---CC----ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 3456655544322111 235699999998887765421 11 222222 444 4444311
Q ss_pred ----CCC----CCCCcEEEEECCCCeE-EeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCcee-eeeEEEEEC
Q 009435 104 ----DGM----NPLRDLHILDTSSHTW-ISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY-YNDLYILNT 173 (535)
Q Consensus 104 ----~~~----~~~~~~~~yd~~t~~W-~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~-~n~v~~yd~ 173 (535)
++. .....++++|+.+++. ..+.. + .....+...+.+++.+..... ..... ...++.+|
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~---~~~~~~~~~l~~~d- 206 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREI---IPQYFKFWDIYIWE- 206 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCS---SCCSSCCEEEEEEE-
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccc---cccccccccEEEeC-
Confidence 000 1135799999999887 55542 1 223334444445554542210 00002 46788888
Q ss_pred CCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCC--CcccCceEEEECCCCcEEEeecCCCCCCCceeeE-EEEE
Q 009435 174 ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH--DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAF 250 (535)
Q Consensus 174 ~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~--~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs-~v~~ 250 (535)
+.+++.+... .......-+++.+++.+.... ......++.+| +.++..+.. .. ...... .+..
T Consensus 207 -~~~~~~l~~~-------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~-~~~~~~~~~~s 272 (347)
T 2gop_A 207 -DGKEEKMFEK-------VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EV-DRGVGQAKIKD 272 (347)
T ss_dssp -TTEEEEEEEE-------ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TC-CSEEEEEEEET
T ss_pred -CCceEEeccC-------cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cC-CcccCCccEEc
Confidence 6777776521 111222445554444443221 11245799999 666766543 11 122222 2222
Q ss_pred CCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
+.+|+.+.... ...+| ++ ++....+
T Consensus 273 -dg~~~~~~~~~----~~~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 273 -GKVYFTLFEEG----SVNLY-IW--DGEIKPI 297 (347)
T ss_dssp -TEEEEEEEETT----EEEEE-EE--SSSEEEE
T ss_pred -CcEEEEEecCC----cEEEE-Ec--CCceEEE
Confidence 44666655432 33577 77 4554444
No 235
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.01 E-value=63 Score=30.86 Aligned_cols=188 Identities=10% Similarity=0.022 Sum_probs=89.7
Q ss_pred CEEEEECCcCCCCCCcceEEEEEcCCCeEEE-eeccCCCCCCCCc--eEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 44 RFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ-PVIKGSPPTPRDS--HSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 44 ~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~-l~~~g~~P~~R~~--hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
+.+++.||.+ ..+.+||..+++-.. +. .+..-.-... ..++..++.|.++-. ...+..||..+.
T Consensus 48 ~~~l~sg~~D------g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~~~s~s~D~~i~~w~~------~~~~~~~~~~~~ 114 (343)
T 3lrv_A 48 KWVCMCRCED------GALHFTQLKDSKTITTIT-TPNPRTGGEHPAIISRGPCNRLLLLYP------GNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEEET------TEEEEEEESSSSCEEEEE-EECCCTTCCCCSEEEECSTTEEEEEET------TTEEEEEETTTC
T ss_pred CCEEEEECCC------CcEEEEECCCCcEEEEEe-cCCceeeeeCCceEEecCCCeEEEEEc------cCceEEeecCCc
Confidence 3567777754 357888877654321 11 0111000000 122222445555532 235667777776
Q ss_pred eE-EeccccCCCCCCCCCeEEEEE---CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeE
Q 009435 121 TW-ISPSVRGEGPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (535)
Q Consensus 121 ~W-~~~~~~g~~p~~r~~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~ 196 (535)
+- ..... .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...... .......++
T Consensus 115 ~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~d-----------g~i~~wd~~~~~~~~~~~~---~~~~~i~~~ 176 (343)
T 3lrv_A 115 KVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNR-----------GTIGFQSYEDDSQYIVHSA---KSDVEYSSG 176 (343)
T ss_dssp CEEEEEEC----CCSSCEEEEECCC---CCEEEEEETT-----------CCEEEEESSSSCEEEEECC---CSSCCCCEE
T ss_pred ceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCC-----------CcEEEEECCCCcEEEEEec---CCCCceEEE
Confidence 52 22221 110011112211 45567777732 3577889887766443211 111112223
Q ss_pred Ee-eCCEEEEEecCCCCCcccCceEEEECCCCcEE--EeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEE
Q 009435 197 SS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK--ELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 197 ~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~--~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~ 272 (535)
+. .++.+++.|+.++ .+.+||+.+.+-. .+.. .....-.++... ++..++.|+ .+ .+.+
T Consensus 177 ~~~pdg~~lasg~~dg------~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~~------~v~i 239 (343)
T 3lrv_A 177 VLHKDSLLLALYSPDG------ILDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-DQ------TVVC 239 (343)
T ss_dssp EECTTSCEEEEECTTS------CEEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-SS------BEEE
T ss_pred EECCCCCEEEEEcCCC------EEEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-CC------eEEE
Confidence 32 2677888887654 4889999876533 2211 011111222222 455666666 22 4899
Q ss_pred EecCCCc
Q 009435 273 IDVDSGL 279 (535)
Q Consensus 273 yd~~~~~ 279 (535)
||+.+..
T Consensus 240 wd~~~~~ 246 (343)
T 3lrv_A 240 FDLRKDV 246 (343)
T ss_dssp EETTSST
T ss_pred EEcCCCC
Confidence 9988753
No 236
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=73.98 E-value=19 Score=37.74 Aligned_cols=192 Identities=11% Similarity=-0.026 Sum_probs=92.8
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
.+++.+++..+.. +.+.+||..+.+-.++.. .+. .. .+..-+++..++++.+... ...++++|+.+.
T Consensus 119 ~dg~~~~~~s~~~------~~~~l~d~~~g~~~~l~~---~~~--~~-~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g 185 (582)
T 3o4h_A 119 DTGEAVVFTGATE------DRVALYALDGGGLRELAR---LPG--FG-FVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSG 185 (582)
T ss_dssp ECSSCEEEEEECS------SCEEEEEEETTEEEEEEE---ESS--CE-EEEEEETTEEEEEEEEETT-EEEEEEEETTTC
T ss_pred CCCCeEEEEecCC------CCceEEEccCCcEEEeec---CCC--ce-EEECCCCCEEEEEEEcCCC-CeEEEEEcCCCC
Confidence 3454455554432 224477888887776652 121 22 2222355555554433221 245999999998
Q ss_pred eEEeccccCCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeE---
Q 009435 121 TWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC--- 196 (535)
Q Consensus 121 ~W~~~~~~g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~--- 196 (535)
+++.+.. ... .....+. -+++.++.+..+ + ...++++|+.+.+.. +..... .......
T Consensus 186 ~~~~l~~---~~~--~~~~~~~SpDG~~l~~~~~~------~---~~~i~~~d~~~~~~~-~~~~~~---~~~~~~~~~~ 247 (582)
T 3o4h_A 186 GLRVFDS---GEG--SFSSASISPGMKVTAGLETA------R---EARLVTVDPRDGSVE-DLELPS---KDFSSYRPTA 247 (582)
T ss_dssp CCEEECC---SSC--EEEEEEECTTSCEEEEEECS------S---CEEEEEECTTTCCEE-ECCCSC---SHHHHHCCSE
T ss_pred CceEeec---CCC--ccccceECCCCCEEEEccCC------C---eeEEEEEcCCCCcEE-EccCCC---cChhhhhhcc
Confidence 8876541 111 1122222 245444433311 1 257999999998877 321111 0000011
Q ss_pred -----EeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEE
Q 009435 197 -----SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLY 271 (535)
Q Consensus 197 -----~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~ 271 (535)
..-++++++.+..++ .+.+|++ ++... .+........+. ++++++.++... ....+|
T Consensus 248 ~~~~~~spdg~~~~~~~~~g------~~~l~~~--g~~~~------~~~~~v~~~~~s-dg~~l~~~s~~~---~p~~l~ 309 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREG------RSAVFID--GERVE------APQGNHGRVVLW-RGKLVTSHTSLS---TPPRIV 309 (582)
T ss_dssp EEEEEECTTSCEEEEEEETT------EEEEEET--TEEEC------CCSSEEEEEEEE-TTEEEEEEEETT---EEEEEE
T ss_pred ccceeEcCCCcEEEEEEcCC------cEEEEEE--CCeec------cCCCceEEEEec-CCEEEEEEcCCC---CCCeEE
Confidence 223566776665432 3566666 33322 122211122233 778776665432 235688
Q ss_pred EEecCCCcEEE
Q 009435 272 MIDVDSGLWTK 282 (535)
Q Consensus 272 ~yd~~~~~W~~ 282 (535)
.+|..+ ..+.
T Consensus 310 ~~d~~~-~~~~ 319 (582)
T 3o4h_A 310 SLPSGE-PLLE 319 (582)
T ss_dssp EETTCC-EEEC
T ss_pred EEcCCC-ceEE
Confidence 888765 4433
No 237
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=73.96 E-value=41 Score=31.80 Aligned_cols=155 Identities=13% Similarity=0.083 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEEC----CEEEEEcCCCCCCCCCCceeeeeEEE
Q 009435 95 ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG----KRLFIFGGCGKSSNTNDEVYYNDLYI 170 (535)
Q Consensus 95 ~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~----~~lyv~GG~~~~~~~~~~~~~n~v~~ 170 (535)
.++++.|+.+. .-..+.+||..+.+....... .....-.+++... +.+++.|+.+ ..+.+
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~d-----------g~i~i 94 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREI---EKAKPIKCGTFGATSLQQRYLATGDFG-----------GNLHI 94 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEE---EESSCEEEEECTTCCTTTCCEEEEETT-----------SCEEE
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeee---cccCcEEEEEEcCCCCCCceEEEecCC-----------CeEEE
Confidence 35666665421 124688888888766443211 1111112222222 3666666632 34777
Q ss_pred EECCCcc--EEEeccCCCCCCCCCceeEE-------eeCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCC
Q 009435 171 LNTETFV--WKRATTSGNPPSARDSHTCS-------SWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVL 239 (535)
Q Consensus 171 yd~~t~~--W~~~~~~~~~p~~r~~~s~~-------~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p 239 (535)
||+.+.. ...+.. ....-.++. ..++.+++.|+.++ .+.+||+.+.. ...+..... .
T Consensus 95 wd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~-~ 162 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKG-----HKEIINAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQG-E 162 (357)
T ss_dssp ECTTSCSSCSEEECC-----CSSCEEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCCTT-S
T ss_pred EeCCCCCccEEEEEe-----cccceEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceeccccCC-C
Confidence 7877654 122210 000111111 12456777777543 48889987754 333332110 1
Q ss_pred CCceeeEEE-----EECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 240 SPRAGHSTV-----AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 240 ~~R~~hs~v-----~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
..+.-.+++ ..++.+++.|+.. ..+.+||+.+..-...
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~ 205 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRWE 205 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccC------CeEEEEECccCceeee
Confidence 111222222 1356677777653 3489999988764333
No 238
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=73.17 E-value=1.2e+02 Score=33.57 Aligned_cols=201 Identities=10% Similarity=0.113 Sum_probs=100.3
Q ss_pred eEEEEEcCCCeEEEeeccCCCCC-----CCCceEEEEEC---CEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCC
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPT-----PRDSHSCTTVG---ENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGP 132 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~-----~R~~hs~~~~~---~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 132 (535)
.+|+-+-.-.+|+.+. ..+. .+.-+++++.. +.+|+..|.........+++-+-.-.+|+++......+
T Consensus 38 gv~rS~DgG~tW~~~~---~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~ 114 (789)
T 1sqj_A 38 GAYRWDAGTSKWIPLN---DFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMG 114 (789)
T ss_dssp CEEEEETTTTEEEESC---TTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCC
T ss_pred CEEEecCCCCCeeECc---cCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccC
Confidence 4788887888999864 2111 12333444332 46888766422111134454444457899876321111
Q ss_pred ---CCC-CCeEEEEEC---CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCC-CCCCceeEEee---CC
Q 009435 133 ---EAR-EGHSAALVG---KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP-SARDSHTCSSW---KN 201 (535)
Q Consensus 133 ---~~r-~~hs~~~~~---~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p-~~r~~~s~~~~---~~ 201 (535)
..| ..+.+++.. +.+|+ |.. ...+++-+-.-.+|+++....... .....+.+++. .+
T Consensus 115 ~~~~~~~~~~~iav~p~~~~~v~~-g~~-----------~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~ 182 (789)
T 1sqj_A 115 ANDMGRNNGERLAVNPFNSNEVWM-GTR-----------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNG 182 (789)
T ss_dssp TTSTTTTSCCCEEEETTEEEEEEE-ECS-----------SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTT
T ss_pred ccCCCccceeEEEEcCCCCCEEEE-Eec-----------cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCC
Confidence 122 223455442 45666 331 133555555567899987421111 11112223222 24
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCC----------------ceeeEEEEE--CCEEEEEeccCCC
Q 009435 202 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP----------------RAGHSTVAF--GKNLFVFGGFTDS 263 (535)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~----------------R~~hs~v~~--~~~iyv~GG~~~~ 263 (535)
.||+..... ..+++=.=.-.+|+.+.. .+.. ...|.++.. ++.||+..+....
T Consensus 183 ~~~~~~~~~------~~v~~S~DgG~TW~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 253 (789)
T 1sqj_A 183 TIYASATAP------QGMYVTHDGGVSWEPVAG---QPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPG 253 (789)
T ss_dssp CEEEEESST------TCEEEESSTTSSCEECTT---CCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCS
T ss_pred EEEEEEcCC------CeEEEEcCCCcCcccCCC---CcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCC
Confidence 566654321 224433334567998863 2221 111444333 7888887432110
Q ss_pred --CCccCcEEEEecCCCcEEEEee
Q 009435 264 --QNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 264 --~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
......|++.+-...+|+.+..
T Consensus 254 p~~g~~g~l~~S~DgG~tW~~~~~ 277 (789)
T 1sqj_A 254 PWGVTFGEVWRQNRTSGAWDDITP 277 (789)
T ss_dssp SSCCCCCCEEEEETTTCCEEECCC
T ss_pred CCCCCCceEEEEeCCCCceEECcC
Confidence 0123468999888899999875
No 239
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=72.28 E-value=1.4e+02 Score=33.95 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=33.1
Q ss_pred CceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEE-EEecCCCcEEEEe
Q 009435 217 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLY-MIDVDSGLWTKVI 284 (535)
Q Consensus 217 ~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~-~yd~~~~~W~~l~ 284 (535)
..++.++..+.....+.. .+..+....... +++.+++++. ...+| ++|+.+.....+.
T Consensus 317 ~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~ 375 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPE---PLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFE 375 (1045)
T ss_dssp TEEEEECTTSSBEEECSC---CSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECC
T ss_pred CEEEEEcCCCCceEEccC---CCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEec
Confidence 358888888777655432 111122222333 5555555543 24689 9999887766554
No 240
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=71.90 E-value=80 Score=31.14 Aligned_cols=211 Identities=14% Similarity=0.152 Sum_probs=106.7
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCC--C-----Cce--EEEEE----CCEEEEEcCCCCCCCC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTP--R-----DSH--SCTTV----GENLYVFGGTDGMNPL 109 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~--R-----~~h--s~~~~----~~~Iyv~GG~~~~~~~ 109 (535)
.+.||+.+..+. .-..+++.+....+|+.+......+.. + ..+ +.+.. .+.||+.+- .
T Consensus 67 ~~~l~~g~~~g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ 137 (394)
T 3b7f_A 67 PERMLMAARTGH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------P 137 (394)
T ss_dssp TTCEEEEEEC-----CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------T
T ss_pred CCeEEEEecCCC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------C
Confidence 455777543211 112577777777899987532112211 1 111 22222 466777542 1
Q ss_pred CcEEEEECCCCeEEeccccCCCC--------------CCCCCeEEEEE---CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 110 RDLHILDTSSHTWISPSVRGEGP--------------EAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p--------------~~r~~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
..+++.+-...+|+.+......| .....++++.. .+.||+... ...+++.+
T Consensus 138 ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~------------~ggl~~s~ 205 (394)
T 3b7f_A 138 QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS------------SGGVFEST 205 (394)
T ss_dssp TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE------------TBEEEEES
T ss_pred CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC------------CCCEEEEC
Confidence 35888877778998865211111 11122344433 246777543 13478888
Q ss_pred CCCccEEEeccCC---CCCCC-----CCceeEEeeC---CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCC
Q 009435 173 TETFVWKRATTSG---NPPSA-----RDSHTCSSWK---NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP 241 (535)
Q Consensus 173 ~~t~~W~~~~~~~---~~p~~-----r~~~s~~~~~---~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~ 241 (535)
-...+|+.+.... .+|.+ ...+.++... +.||+-.+ ..+++.+-...+|+.+.. .+|..
T Consensus 206 DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------~gl~~s~D~G~tW~~~~~--~l~~~ 275 (394)
T 3b7f_A 206 DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------CGIYRMDRREGVWKRIGD--AMPRE 275 (394)
T ss_dssp STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--------TEEEEEETTTTEEECGGG--GSCTT
T ss_pred CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--------CeEEEeCCCCCcceECCC--CCCCC
Confidence 7888999885311 11211 2234444432 56776421 348888888899998863 12221
Q ss_pred --ceeeEEEEE---CCEEEEEeccCCC------CCccCcEEEEecCCCcEEEEe
Q 009435 242 --RAGHSTVAF---GKNLFVFGGFTDS------QNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 242 --R~~hs~v~~---~~~iyv~GG~~~~------~~~~~dv~~yd~~~~~W~~l~ 284 (535)
.....++.. .+.||+....... ......+|+-.-.-.+|+.+.
T Consensus 276 ~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~ 329 (394)
T 3b7f_A 276 VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD 329 (394)
T ss_dssp TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC
T ss_pred CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC
Confidence 333444432 3567775311100 001123454433346899986
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=71.06 E-value=72 Score=30.27 Aligned_cols=202 Identities=8% Similarity=-0.035 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCeEEEeeccCCC---------------CCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSP---------------PTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~---------------P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
..+++||+.+.++..+...... +....-++++.. +++|||.-.. ..++++|+.+...
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~ 113 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHA 113 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEECTTCEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEEeCCCCEE
Confidence 5689999988777654321110 000112445544 5789988432 3488999887655
Q ss_pred EeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCC------CceeeeeEEEEECCCccEEEeccCCCCCCCCCce
Q 009435 123 ISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTN------DEVYYNDLYILNTETFVWKRATTSGNPPSARDSH 194 (535)
Q Consensus 123 ~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~------~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 194 (535)
+.+...........-..++.. +++|||.-......... .......+++||+.+.+.+.+......| .
T Consensus 114 ~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-----~ 188 (322)
T 2fp8_A 114 TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP-----G 188 (322)
T ss_dssp EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-----C
T ss_pred EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC-----c
Confidence 443211010001112233333 46788864311000000 0012357999999877765543211111 2
Q ss_pred eEEee-C-CEEEEEecCCCCCcccCceEEEECCC---CcEEEeecCCCCCCCceeeEEE-EECCEEEEEeccCCCC----
Q 009435 195 TCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDT---LTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQ---- 264 (535)
Q Consensus 195 s~~~~-~-~~lyv~GG~~~~~~~~~~i~~yd~~t---~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyv~GG~~~~~---- 264 (535)
.++.. + +.|||.-. ..+.|++|++.+ ..++.+.. .+.| ..++ --+++|||........
T Consensus 189 gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~~---~~gP---~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLVK---IPNP---GNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEEE---CSSE---EEEEECTTSCEEEEEEEETTSSTTS
T ss_pred ceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEEe---CCCC---CCeEECCCCCEEEEecCcccccccC
Confidence 23333 3 45887633 135689999875 23444332 2211 1222 2246788875431000
Q ss_pred CccCcEEEEecCCCcEEEEe
Q 009435 265 NLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 265 ~~~~dv~~yd~~~~~W~~l~ 284 (535)
.....+++||+....-..+.
T Consensus 257 ~~~~~v~~~d~~G~~~~~~~ 276 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNILEVIP 276 (322)
T ss_dssp CEEEEEEEECTTSCEEEEEE
T ss_pred CCccEEEEECCCCCEEEEEE
Confidence 01245899998755444444
No 242
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=70.96 E-value=75 Score=30.37 Aligned_cols=67 Identities=9% Similarity=0.190 Sum_probs=34.1
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHIL 115 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~y 115 (535)
+.+..++.+++.|+.+ ..+.++|..+.+....- .+. ...-.++.+ +++.++.||.+ ..+.+|
T Consensus 82 ~~~~~~~~~l~s~s~D------~~v~lwd~~~~~~~~~~-~~h----~~~v~~v~~sp~~~~l~s~~~d-----~~i~~w 145 (343)
T 2xzm_R 82 LALSQENCFAISSSWD------KTLRLWDLRTGTTYKRF-VGH----QSEVYSVAFSPDNRQILSAGAE-----REIKLW 145 (343)
T ss_dssp EEECSSTTEEEEEETT------SEEEEEETTSSCEEEEE-ECC----CSCEEEEEECSSTTEEEEEETT-----SCEEEE
T ss_pred EEECCCCCEEEEEcCC------CcEEEEECCCCcEEEEE-cCC----CCcEEEEEECCCCCEEEEEcCC-----CEEEEE
Confidence 3333333355666543 45888998876543311 111 111122222 45566677654 357788
Q ss_pred ECCCC
Q 009435 116 DTSSH 120 (535)
Q Consensus 116 d~~t~ 120 (535)
|+...
T Consensus 146 d~~~~ 150 (343)
T 2xzm_R 146 NILGE 150 (343)
T ss_dssp ESSSC
T ss_pred eccCC
Confidence 87643
No 243
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=70.79 E-value=71 Score=30.08 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=17.7
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEE
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 230 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~ 230 (535)
++.+++.|+.++ .+.+||+.+.+-.
T Consensus 284 ~~~~l~s~~~dg------~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 284 VHGTLATVGSDG------RFSFWDKDARTKL 308 (368)
T ss_dssp TTCCEEEEETTS------CEEEEETTTTEEE
T ss_pred CCCEEEEEccCC------eEEEEECCCCcEE
Confidence 566777887653 3889999876543
No 244
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=68.40 E-value=81 Score=29.80 Aligned_cols=148 Identities=11% Similarity=0.182 Sum_probs=71.3
Q ss_pred EEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEE
Q 009435 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 39 ~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
.+..++..++.|+.+ ..+.+||..+++-...- .+. ...-.++.+ ++.+++.|+.++ .+.+||
T Consensus 72 ~~s~dg~~l~s~s~D------~~v~~wd~~~~~~~~~~-~~h----~~~v~~~~~~~~~~~l~s~s~D~-----~i~vwd 135 (319)
T 3frx_A 72 TLTADGAYALSASWD------KTLRLWDVATGETYQRF-VGH----KSDVMSVDIDKKASMIISGSRDK-----TIKVWT 135 (319)
T ss_dssp EECTTSSEEEEEETT------SEEEEEETTTTEEEEEE-ECC----SSCEEEEEECTTSCEEEEEETTS-----CEEEEE
T ss_pred EECCCCCEEEEEeCC------CEEEEEECCCCCeeEEE-ccC----CCcEEEEEEcCCCCEEEEEeCCC-----eEEEEE
Confidence 333333355666643 46888999887643311 111 111222222 456777777653 477778
Q ss_pred CCCCeEEeccccCCCCCCCCCeEEEEE-------CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCC
Q 009435 117 TSSHTWISPSVRGEGPEAREGHSAALV-------GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 189 (535)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~-------~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~ 189 (535)
.....-..+. + ....-..+... ++.+++.|+. ...+.++|+.+.+-...-. + ..
T Consensus 136 ~~~~~~~~~~--~---h~~~v~~~~~~~~~~~~~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~-~--h~ 196 (319)
T 3frx_A 136 IKGQCLATLL--G---HNDWVSQVRVVPNEKADDDSVTIISAGN-----------DKMVKAWNLNQFQIEADFI-G--HN 196 (319)
T ss_dssp TTSCEEEEEC--C---CSSCEEEEEECCC------CCEEEEEET-----------TSCEEEEETTTTEEEEEEC-C--CC
T ss_pred CCCCeEEEEe--c---cCCcEEEEEEccCCCCCCCccEEEEEeC-----------CCEEEEEECCcchhheeec-C--CC
Confidence 7654332221 0 00011111111 2235555663 2346778887654332211 0 01
Q ss_pred CCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCc
Q 009435 190 ARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLT 228 (535)
Q Consensus 190 ~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~ 228 (535)
. .-.+++. .++++++.||.++ .+.+||+.+.+
T Consensus 197 ~-~v~~~~~sp~g~~l~s~~~dg------~i~iwd~~~~~ 229 (319)
T 3frx_A 197 S-NINTLTASPDGTLIASAGKDG------EIMLWNLAAKK 229 (319)
T ss_dssp S-CEEEEEECTTSSEEEEEETTC------EEEEEETTTTE
T ss_pred C-cEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCc
Confidence 1 1112222 2677888887653 48889988765
No 245
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=68.11 E-value=1e+02 Score=30.81 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.1
Q ss_pred ccceEEEEcCCCEEEEECC
Q 009435 33 WGHTCNAIKGGRFLYVFGG 51 (535)
Q Consensus 33 ~gh~~~~v~~~~~Iyi~GG 51 (535)
..|++++..++..+|.+|-
T Consensus 77 ~~ht~al~~~gg~v~~wG~ 95 (406)
T 4d9s_A 77 ADHTVAYSQSGMEVYSWGW 95 (406)
T ss_dssp SSEEEEEETTTTEEEEEEC
T ss_pred cceEEEEECCCCEEEEEcC
Confidence 3577777766668999984
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=67.76 E-value=85 Score=29.77 Aligned_cols=199 Identities=10% Similarity=-0.059 Sum_probs=98.4
Q ss_pred CCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccC-CCCCCCCceEEEEE--CCEEEEEcCCCC------------CC
Q 009435 43 GRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKG-SPPTPRDSHSCTTV--GENLYVFGGTDG------------MN 107 (535)
Q Consensus 43 ~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g-~~P~~R~~hs~~~~--~~~Iyv~GG~~~------------~~ 107 (535)
++.|||.-.. ..+++||+.+...+.+.... ..+..+ -...+.. +++||+.-.... ..
T Consensus 91 ~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~-p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 91 NNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKW-LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp TTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSC-EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred CCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccc-cceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 5578886321 24888998877665543110 111111 1223332 467888642210 01
Q ss_pred CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCC---ccEEEec
Q 009435 108 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTET---FVWKRAT 182 (535)
Q Consensus 108 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t---~~W~~~~ 182 (535)
....+++||+.+.+....... +. .-..++.. + +.|||.-. ..+.|++|++.. ...+.+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~--~~---~p~gia~~~dg~~lyv~d~-----------~~~~I~~~~~~~~~~~~~~~~~ 226 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE--LH---VPGGAEVSADSSFVLVAEF-----------LSHQIVKYWLEGPKKGTAEVLV 226 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE--ES---CCCEEEECTTSSEEEEEEG-----------GGTEEEEEESSSTTTTCEEEEE
T ss_pred CCceEEEEeCCCCEEEEeccC--Cc---cCcceEECCCCCEEEEEeC-----------CCCeEEEEECCCCcCCccceEE
Confidence 235699999988876543211 11 11233333 2 35888632 135688998875 2344333
Q ss_pred cCCCCCCCCCceeEEee-CCEEEEEecCCCCC----cccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEE
Q 009435 183 TSGNPPSARDSHTCSSW-KNKIIVIGGEDGHD----YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVF 257 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~----~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~ 257 (535)
. .+. -..+++. ++.|||........ .....+.+||+....-..+......+ ...-.+++..+++|||.
T Consensus 227 ~---~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~ 299 (322)
T 2fp8_A 227 K---IPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIG 299 (322)
T ss_dssp E---CSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEE
T ss_pred e---CCC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEe
Confidence 1 111 1223332 56788875321000 01245899999766555555321111 12223344567888886
Q ss_pred eccCCCCCccCcEEEEecCCC
Q 009435 258 GGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 258 GG~~~~~~~~~dv~~yd~~~~ 278 (535)
... .+.|.+|++..+
T Consensus 300 ~~~------~~~i~~~~~~~~ 314 (322)
T 2fp8_A 300 TLF------HGSVGILVYDKK 314 (322)
T ss_dssp CSS------CSEEEEEEC---
T ss_pred ecC------CCceEEEecccc
Confidence 533 245888887543
No 247
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=67.61 E-value=36 Score=30.68 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=58.1
Q ss_pred CCCEEEEECCcCCCCCCcceEEEEEcCCCeE---EEeeccC-CCCCCCCceEEEE-ECCEEEEEcCCCCCCCCCcEEEEE
Q 009435 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTW---SQPVIKG-SPPTPRDSHSCTT-VGENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 42 ~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W---~~l~~~g-~~P~~R~~hs~~~-~~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
.++++|+|-| +.+|+|+..+... +.+...+ .+|......+... .++++|+|-| +..|+||
T Consensus 60 ~~g~~yfFkg--------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd 124 (196)
T 3c7x_A 60 KDGKFVFFKG--------DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFN 124 (196)
T ss_dssp TTSCEEEEET--------TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEE
T ss_pred CCCcEEEecC--------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEe
Confidence 3456899976 5789998542111 1121111 2342222322222 2689999987 5799999
Q ss_pred CCCCeEEe-----ccccCCCCCCCCCeEEEEE-CC-EEEEEcCCCCCCCCCCceeeeeEEEEECCCcc
Q 009435 117 TSSHTWIS-----PSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFV 177 (535)
Q Consensus 117 ~~t~~W~~-----~~~~g~~p~~r~~hs~~~~-~~-~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~ 177 (535)
..+++-.. +..-..+| ..-.++... ++ ++|+|-| +..++||..+.+
T Consensus 125 ~~~~~v~~gyPk~i~~~~gip--~~idaAf~~~~~~~~YfFkg-------------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 125 EELRAVDSEYPKNIKVWEGIP--ESPRGSFMGSDEVFTYFYKG-------------NKYWKFNNQKLK 177 (196)
T ss_dssp TTTTEECTTCSEEGGGSBTCC--SSCSEEEECTTSSEEEEEET-------------TEEEEEETTTTE
T ss_pred CCcccccCCCCccHHHCCCcC--CCcceeEEecCCCEEEEEEC-------------CEEEEEECCcce
Confidence 88765421 11111122 222333333 44 8999988 457899987653
No 248
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=67.07 E-value=89 Score=29.76 Aligned_cols=210 Identities=13% Similarity=0.060 Sum_probs=103.7
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCC--eEEEeeccC---CCCCCCCc-eEEEEE--CCEEEEEcCCCCCCCC
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWSQPVIKG---SPPTPRDS-HSCTTV--GENLYVFGGTDGMNPL 109 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~~l~~~g---~~P~~R~~-hs~~~~--~~~Iyv~GG~~~~~~~ 109 (535)
+++..++.||+.... ...+.+||+... .-..+...+ ........ ..++.. ++.||+..++. .
T Consensus 96 ia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~----~ 165 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC----N 165 (329)
T ss_dssp EEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS----C
T ss_pred EEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC----C
Confidence 344333347776442 246888887654 222222111 10111112 233333 57899997521 2
Q ss_pred CcEEEEECCCCeEEeccccCCC----CCCCC-CeEEEEE-C-CEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 110 RDLHILDTSSHTWISPSVRGEG----PEARE-GHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~----p~~r~-~hs~~~~-~-~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
..+.+||.....-......+.. +.... -+.+++. + +.|||.... .+.|.+||+.+.+....-
T Consensus 166 ~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 166 SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------NGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTTCCEEEEE
T ss_pred CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------CCEEEEEECCCCcEEEEE
Confidence 5688999654433333222211 11111 2344444 3 789998652 256889999866654432
Q ss_pred cCCCCCCCCCceeEEeeCCEEEEEecCCCC-CcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEecc
Q 009435 183 TSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGF 260 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~-~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~ 260 (535)
.. .........++...+.+|+..|...- +.....+.++|+.+.+....-..+ ......-+.++.. ++.|||....
T Consensus 235 ~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 235 KH--ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp CC--TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESS
T ss_pred ec--cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECC
Confidence 11 11111222333345777777764321 112346899998888765543211 0111112233332 4688887654
Q ss_pred CCCCCccCcEEEEecCC
Q 009435 261 TDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 261 ~~~~~~~~dv~~yd~~~ 277 (535)
. +.|++|++..
T Consensus 312 ~------~~I~~~~~~~ 322 (329)
T 3fvz_A 312 T------NTVWKFTLTE 322 (329)
T ss_dssp S------CCEEEEEEEE
T ss_pred C------CEEEEEeCCc
Confidence 2 3588888653
No 249
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=67.01 E-value=85 Score=29.53 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=50.9
Q ss_pred CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 201 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 201 ~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
+.+++.|+.++ .+.+||+.+.+-...-. . ....-.++... ++.+++.|+.+ ..|.+||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV---G-HGNAINELKFHPRDPNLLLSVSKD------HALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE---S-CCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec---C-CCCcEEEEEECCCCCCEEEEEeCC------CeEEEEEeecC
Confidence 57888888653 48889988765332211 0 11111222222 45677777753 24899999887
Q ss_pred cEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 279 LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 279 ~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
.-...... ............+ ..++..++.|+.+.
T Consensus 149 ~~~~~~~~--~~~~~~~v~~~~~--~~~~~~l~~~~~dg 183 (366)
T 3k26_A 149 TLVAIFGG--VEGHRDEVLSADY--DLLGEKIMSCGMDH 183 (366)
T ss_dssp EEEEEECS--TTSCSSCEEEEEE--CTTSSEEEEEETTS
T ss_pred eEEEEecc--cccccCceeEEEE--CCCCCEEEEecCCC
Confidence 64433211 0111122222233 34566777777654
No 250
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=66.68 E-value=73 Score=28.62 Aligned_cols=152 Identities=8% Similarity=0.085 Sum_probs=79.4
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCC---CeEEecccc-CCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCcee
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSS---HTWISPSVR-GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVY 164 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t---~~W~~~~~~-g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~ 164 (535)
+++.+.+++|+|-| +.+|+++... +.=..+... ..+|. ...++....++++|+|-|
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg------------ 69 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG------------ 69 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET------------
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC------------
Confidence 34467899999987 4688886431 000111111 12343 233333234678999988
Q ss_pred eeeEEEEECCCcc---EEEeccCC-CCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCcEEE-----eec
Q 009435 165 YNDLYILNTETFV---WKRATTSG-NPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-----LNT 234 (535)
Q Consensus 165 ~n~v~~yd~~t~~---W~~~~~~~-~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~-----v~~ 234 (535)
+..|+|+..+.. =+.+.... .+|..+...+... .++++|+|-| +..|+||..+++-.. +..
T Consensus 70 -~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG--------~~yw~yd~~~~~v~~gyPk~i~~ 140 (196)
T 3c7x_A 70 -DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG--------NKYYRFNEELRAVDSEYPKNIKV 140 (196)
T ss_dssp -TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECTTCSEEGGG
T ss_pred -CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC--------CEEEEEeCCcccccCCCCccHHH
Confidence 456888754211 12232221 1332233333332 2689999976 357899987653211 111
Q ss_pred CCCCCCCceeeEEEEE-CC-EEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 235 SGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 235 ~g~~p~~R~~hs~v~~-~~-~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
...+| ..-.++... ++ ++|+|=|. ..|+||..+.+
T Consensus 141 ~~gip--~~idaAf~~~~~~~~YfFkg~--------~y~r~d~~~~~ 177 (196)
T 3c7x_A 141 WEGIP--ESPRGSFMGSDEVFTYFYKGN--------KYWKFNNQKLK 177 (196)
T ss_dssp SBTCC--SSCSEEEECTTSSEEEEEETT--------EEEEEETTTTE
T ss_pred CCCcC--CCcceeEEecCCCEEEEEECC--------EEEEEECCcce
Confidence 11122 222334444 44 89999774 38999987754
No 251
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=64.78 E-value=3.3 Score=24.14 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.6
Q ss_pred ccCCCCCCCCCCCC
Q 009435 495 AAAPDMKNPAHSDA 508 (535)
Q Consensus 495 ~~~~~~~~~~~~~~ 508 (535)
.+|||||+|.|+--
T Consensus 10 ~~Y~dlKPPsSPsP 23 (26)
T 3mhp_C 10 TAYDDLKPPSSPSP 23 (26)
T ss_dssp TTBTTSSCSSCSSC
T ss_pred ccccccCCCCCCCC
Confidence 46799999999865
No 252
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=64.37 E-value=0.9 Score=45.69 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=55.4
Q ss_pred EECCEEEEEcCCCCCCCCCcEEEEECCCCe--EEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 92 TVGENLYVFGGTDGMNPLRDLHILDTSSHT--WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 92 ~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
+.++.||+.+. + ..++++|..+++ |+... +.. ..+.+..++.+|+.++. ...++
T Consensus 7 v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~--~~~-----~s~p~~~~g~~~v~~s~-----------dg~l~ 62 (369)
T 2hz6_A 7 LPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE--DPV-----LQVPTHVEEPAFLPDPN-----------DGSLY 62 (369)
T ss_dssp -CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC--CCS-----CCCC-----CCEEECTT-----------TCCEE
T ss_pred eeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC--CCc-----eecceEcCCCEEEEeCC-----------CCEEE
Confidence 34666776543 2 369999988764 76532 111 12223456678887652 23588
Q ss_pred EEECCCc--cEEEeccCCCCCCCCCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCCc--EEEeecCCCCCCCcee
Q 009435 170 ILNTETF--VWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAG 244 (535)
Q Consensus 170 ~yd~~t~--~W~~~~~~~~~p~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~--W~~v~~~g~~p~~R~~ 244 (535)
++|..+. .|+.-... +.. ...+.++ .++.+| +|+. -..++.+|+++++ |+.-... ..+
T Consensus 63 a~d~~tG~~~w~~~~~~---~~~-~~~sp~~~~~~~v~-~g~~------dg~v~a~D~~tG~~~w~~~~~~----~~~-- 125 (369)
T 2hz6_A 63 TLGSKNNEGLTKLPFTI---PEL-VQASPCRSSDGILY-MGKK------QDIWYVIDLLTGEKQQTLSSAF----ADS-- 125 (369)
T ss_dssp EC-----CCSEECSCCH---HHH-HTTCSCC-----CC-CCEE------EEEEEEECCC---------------------
T ss_pred EEECCCCceeeeeeccC---ccc-cccCceEecCCEEE-EEeC------CCEEEEEECCCCcEEEEecCCC----ccc--
Confidence 8888654 46532110 000 0011111 244444 3332 2348889988654 6543210 001
Q ss_pred eEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc--EEE
Q 009435 245 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTK 282 (535)
Q Consensus 245 hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~--W~~ 282 (535)
.+..++.+| +|+.. ..++.||+.+++ |+.
T Consensus 126 --~~p~~~~v~-~~~~d------g~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 126 --LSPSTSLLY-LGRTE------YTITMYDTKTRELRWNA 156 (369)
T ss_dssp ---------EE-EEEEE------EEEECCCSSSSSCCCEE
T ss_pred --ccccCCEEE-EEecC------CEEEEEECCCCCEEEeE
Confidence 111334444 44332 248888887664 875
No 253
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=64.04 E-value=1.3e+02 Score=30.57 Aligned_cols=253 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEE-----------cCCCCCCCC
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVF-----------GGTDGMNPL 109 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~-----------GG~~~~~~~ 109 (535)
.+.+.+|+.-....... +.+.++|+.+++=..--..|..| +.+...-+.++||. ++
T Consensus 82 ~~~~~vyV~n~~~~~~~--~~VsVID~~t~~vv~~I~vG~~P----gia~SpDgk~lyVan~~~~~~~~G~~~------- 148 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAI--TQQFVIDGSTGRILGMTDGGFLP----HPVAAEDGSFFAQASTVFERIARGKRT------- 148 (426)
T ss_dssp CCTTEEEEEECTTTCSS--EEEEEEETTTTEEEEEEEECSSC----EEEECTTSSCEEEEEEEEEETTEEEEE-------
T ss_pred CCCCEEEEECCCcCCCC--CeEEEEECCCCEEEEEEECCCCC----ceEECCCCCEEEEEeccccccccCCCC-------
Q ss_pred CcEEEEECCCCeEEeccccCCCC--------CCCCCeEEEEECCEEEEEc--CCCCCCCCCCceeeeeEEEEECCCccEE
Q 009435 110 RDLHILDTSSHTWISPSVRGEGP--------EAREGHSAALVGKRLFIFG--GCGKSSNTNDEVYYNDLYILNTETFVWK 179 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p--------~~r~~hs~~~~~~~lyv~G--G~~~~~~~~~~~~~n~v~~yd~~t~~W~ 179 (535)
+.+.++|+.+.+-..-- .++ ..-.+......+.++||.. . .+.+.++|+.+.+-.
T Consensus 149 ~~VsviD~~t~~vv~~I---~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~------------~~~VsVID~~t~kvv 213 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADI---ELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP------------APAVGVVDLEGKTFD 213 (426)
T ss_dssp EEEEEECTTTCCEEEEE---EETTCCCCCBSCCGGGSEECTTSSEEEEEECSS------------SCEEEEEETTTTEEE
T ss_pred CEEEEEECCCCcEEEEE---ECCCccccccCCCcceEEEcCCCCEEEEEecCC------------CCeEEEEECCCCeEE
Q ss_pred EeccCCCC----CCCCCceeEEeeCCEEEEEecCCCCCc-------------------------------ccCceEEEEC
Q 009435 180 RATTSGNP----PSARDSHTCSSWKNKIIVIGGEDGHDY-------------------------------YLSDVHILDT 224 (535)
Q Consensus 180 ~~~~~~~~----p~~r~~~s~~~~~~~lyv~GG~~~~~~-------------------------------~~~~i~~yd~ 224 (535)
.--..+.. |.....+....-+++++++--..+.-. ..+.+++.|.
T Consensus 214 ~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~ 293 (426)
T 3c75_H 214 RMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADL 293 (426)
T ss_dssp EEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred EEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEec
Q ss_pred CCCcEEEeecCCCC----------CCCceeeEEEEECCEEEEEeccCCCCC---ccCcEEEEecCCCcEEEEeeCCCCCC
Q 009435 225 DTLTWKELNTSGMV----------LSPRAGHSTVAFGKNLFVFGGFTDSQN---LYDDLYMIDVDSGLWTKVITTGEGPS 291 (535)
Q Consensus 225 ~t~~W~~v~~~g~~----------p~~R~~hs~v~~~~~iyv~GG~~~~~~---~~~dv~~yd~~~~~W~~l~~~~~~p~ 291 (535)
.+..-..+...... |..........-++++||.-.....+. ..++|+++|..+.+-..--..+..|.
T Consensus 294 ~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~ 373 (426)
T 3c75_H 294 TAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEID 373 (426)
T ss_dssp CSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEEC
T ss_pred cCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcC
Q ss_pred CceeeeeeeecccCCC-EEEEEcccCCCCCccCcEEEEeccccc
Q 009435 292 ARFSVAGDCLDPLKGG-VLVFIGGCNKSLEALDDMYYLYTGLVN 334 (535)
Q Consensus 292 ~r~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~dv~~l~~~~~~ 334 (535)
.-.... .+. .+|+.-..+.. +..+|+...+
T Consensus 374 gia~sp-------Dg~~~lyv~n~~s~~------VsVID~~t~k 404 (426)
T 3c75_H 374 SINVSQ-------DAEPLLYALSAGTQT------LHIYDAATGE 404 (426)
T ss_dssp EEEECC-------SSSCEEEEEETTTTE------EEEEETTTCC
T ss_pred eEEEcc-------CCCEEEEEEcCCCCe------EEEEECCCCC
No 254
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=63.90 E-value=80 Score=31.45 Aligned_cols=112 Identities=8% Similarity=0.065 Sum_probs=61.9
Q ss_pred EEcCCCEEEEECCcCCCCCCcceEEEEEcCCC--eEE-EeeccCCCCCC-CCceEEEEE--CCEEEEEcCCCCCCCCCcE
Q 009435 39 AIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TWS-QPVIKGSPPTP-RDSHSCTTV--GENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 39 ~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W~-~l~~~g~~P~~-R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~ 112 (535)
....++++|+|-| +.+|+|+..+. .+- .+... .+|.. ..--++... ++++|+|-| +..
T Consensus 232 ~~~~~g~~~fFkg--------~~yWr~~~~~~~~gyPk~I~~~-GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~y 295 (365)
T 3ba0_A 232 EIEARNQVFLFKD--------DKYWLISNLRPEPNYPKSIHSF-GFPNFVKKIDAAVFNPRFYRTYFFVD-------NQY 295 (365)
T ss_dssp EEGGGTEEEEEET--------TEEEECSTTSCTTTCSEETTTT-TCCTTCCCCCEEEEETTTTEEEEEET-------TEE
T ss_pred EecCCCEEEEEeC--------CEEEEEcCCcccCCCCceeeec-cCCCCCCCcCEEEEeCCCCEEEEEEC-------CEE
Confidence 3333567999866 56888875422 111 12111 13321 122233333 479999977 579
Q ss_pred EEEECCCCeEEe-----ccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEE
Q 009435 113 HILDTSSHTWIS-----PSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 180 (535)
Q Consensus 113 ~~yd~~t~~W~~-----~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~ 180 (535)
|+||..+++-.. +.. +=+..+..--++... ++++|+|-| +..|+||..+.+-..
T Consensus 296 w~yd~~~~~v~~gyPk~I~~-~f~g~p~~iDaA~~~~~g~~YfFkg-------------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 296 WRYDERRQMMDPGYPKLITK-NFQGIGPKIDAVFYSKNKYYYFFQG-------------SNQFEYDFLLQRITK 355 (365)
T ss_dssp EEEETTTTEECSSCCCCHHH-HSTTCCSSCSEEEEETTTEEEEEET-------------TEEEEEETTTTEEEE
T ss_pred EEEeCCcceecCCCCcchhh-cCCCCCCccceeeEecCCcEEEEeC-------------CEEEEEECCccEEec
Confidence 999987765322 100 001122223344444 789999988 458899988776554
No 255
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=63.86 E-value=1e+02 Score=29.31 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=39.3
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCC
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 278 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~ 278 (535)
++.+++.|+.++ .+.+||+.+.+-..+.. ......-.++... ++.+++.|+.+ ..|.+||+.+.
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~ 202 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPD------GILDVYNLSSP 202 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTT------SCEEEEESSCT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCC
Confidence 456777787554 38899998877644432 1111112233333 56777777754 34899999887
Q ss_pred cE
Q 009435 279 LW 280 (535)
Q Consensus 279 ~W 280 (535)
.-
T Consensus 203 ~~ 204 (343)
T 3lrv_A 203 DQ 204 (343)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=63.65 E-value=70 Score=34.19 Aligned_cols=244 Identities=15% Similarity=0.134 Sum_probs=124.5
Q ss_pred CCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE----CCEEEEEcCCC------C------
Q 009435 42 GGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV----GENLYVFGGTD------G------ 105 (535)
Q Consensus 42 ~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~Iyv~GG~~------~------ 105 (535)
+++++||- +.. .+.+.++|+.+.+-.++- .+|....-|+.+.. ++.+|+-+-.. +
T Consensus 100 DG~~lfVn---d~~---~~rVavIdl~t~~~~~ii---~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMN---DKA---NTRVARVRCDVMKCDAIL---EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEE---ETT---TTEEEEEETTTTEEEEEE---ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEE---cCC---CCEEEEEECCCceEeeEE---eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 36778883 222 257999999998866644 46666667777753 46787775331 1
Q ss_pred CCCCCcEEEEECCCCe--EEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCC-------------------------
Q 009435 106 MNPLRDLHILDTSSHT--WISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSS------------------------- 157 (535)
Q Consensus 106 ~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~------------------------- 157 (535)
....+.+-+.|..+.+ |+. .+.+. | ....+.. ++.+|+----+...
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI-~Vgg~-p----d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQV-LVSGN-L----DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEE-EESSC-C----CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred cccCceEEEEECCCCeEEEEE-EeCCC-c----cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 1233578889999875 443 22221 1 1122222 23344433211000
Q ss_pred -CCCCceeeeeEEEEECCCccEEE-eccCCCCCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCc-E---
Q 009435 158 -NTNDEVYYNDLYILNTETFVWKR-ATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT-W--- 229 (535)
Q Consensus 158 -~~~~~~~~n~v~~yd~~t~~W~~-~~~~~~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~-W--- 229 (535)
......+.+.+-++|..+.+.+. +. ..|.+..-|++..- +..+|+-+. ..+.+.+||..+.+ +
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~---~Ipvg~~PhGv~~sPDGk~v~V~~~------~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTR---YIPIANNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEE---EEEEESSCCCEEECTTSSEEEEECT------TSSBEEEEEGGGHHHHHHS
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEE---EEecCCCceEEEEcCCCCEEEEeCC------CCCeEEEEECccccccccc
Confidence 00012334678888888733211 11 12333344665554 345666654 34669999998652 1
Q ss_pred ------EEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCC--------CcEEEEeeCCCCCCCcee
Q 009435 230 ------KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS--------GLWTKVITTGEGPSARFS 295 (535)
Q Consensus 230 ------~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~--------~~W~~l~~~~~~p~~r~~ 295 (535)
..+.. ...-.+-.|.+..-++.+|+.-.. .+++.+||+++ ..+..+........+--.
T Consensus 316 ~l~~~~~v~~~--v~vG~gP~h~aF~~dG~aY~t~~l------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~ 387 (595)
T 1fwx_A 316 NADPRSAVVAE--PELGLGPLHTAFDGRGNAYTSLFL------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL 387 (595)
T ss_dssp CCCGGGGEEEC--CBCCSCEEEEEECTTSEEEEEETT------TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE
T ss_pred ccCcccceEEE--cCCCCCcceEEECCCCeEEEEEec------CCcEEEEEhhHhhhhhcccccceeEEEeecccccccc
Confidence 01111 012234456666556688887554 35688888876 235555443222222111
Q ss_pred eeeeeec-ccCCCEEEEEcccCC
Q 009435 296 VAGDCLD-PLKGGVLVFIGGCNK 317 (535)
Q Consensus 296 ~~~~~~~-~~~~~~l~v~GG~~~ 317 (535)
+++.... ...+.+||+.-+..+
T Consensus 388 ~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 388 KTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp EETTTTSTTCCSSEEEEEESCCT
T ss_pred eeccceEeCCCCCEEEEcCCCCc
Confidence 2211111 234667777655554
No 257
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=63.51 E-value=1e+02 Score=29.12 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=71.4
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
+++.++.|+.+ ..+.+||+.+++-...- .+. ...-.++... ++.+++.|+.+ ..+.++|
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~-~~h---~~~v~~~~~~~~~~~l~s~s~D-----------~~i~vwd 135 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRF-VGH---KSDVMSVDIDKKASMIISGSRD-----------KTIKVWT 135 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEE-ECC---SSCEEEEEECTTSCEEEEEETT-----------SCEEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEE-ccC---CCcEEEEEEcCCCCEEEEEeCC-----------CeEEEEE
Confidence 55677777654 46889999887643211 010 0011122222 35677777742 3466677
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEee-------CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceee
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSSW-------KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 245 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~~-------~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~h 245 (535)
+....-..+... ......+... ++.+++.|+.++ .+..||+.+.+-...-. + ... .-.
T Consensus 136 ~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~-~--h~~-~v~ 200 (319)
T 3frx_A 136 IKGQCLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADFI-G--HNS-NIN 200 (319)
T ss_dssp TTSCEEEEECCC-----SSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEEC-C--CCS-CEE
T ss_pred CCCCeEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheeec-C--CCC-cEE
Confidence 765443333210 0011111111 233566666543 37888988765433211 1 111 111
Q ss_pred EEEE-ECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 246 STVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 246 s~v~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
+++. -++++++.||.+ ..|.+||+.+.+
T Consensus 201 ~~~~sp~g~~l~s~~~d------g~i~iwd~~~~~ 229 (319)
T 3frx_A 201 TLTASPDGTLIASAGKD------GEIMLWNLAAKK 229 (319)
T ss_dssp EEEECTTSSEEEEEETT------CEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEeCC------CeEEEEECCCCc
Confidence 2222 256677777754 248899998765
No 258
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=63.12 E-value=2e+02 Score=32.49 Aligned_cols=194 Identities=10% Similarity=0.044 Sum_probs=95.0
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCCCeEEe
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSSHTWIS 124 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 124 (535)
.+++.+..+. ...+|.++.....-..+... . .....+..-+++.++++. -..++++|+.+.....
T Consensus 215 ~l~~~~~~dg----~~~l~~~~~~g~~~~~l~~~---~--~~~~~~~SpDG~~la~~~------~~~i~~~d~~~~~l~~ 279 (1045)
T 1k32_A 215 RIYFITDIDG----FGQIYSTDLDGKDLRKHTSF---T--DYYPRHLNTDGRRILFSK------GGSIYIFNPDTEKIEK 279 (1045)
T ss_dssp EEEEEECTTS----SCEEEEEETTSCSCEECCCC---C--SSCEEEEEESSSCEEEEE------TTEEEEECTTTCCEEE
T ss_pred EEEEEEeccC----ceEEEEEeCCCCcceEecCC---C--CcceeeEcCCCCEEEEEe------CCEEEEecCCceEeee
Confidence 5666554321 24688888876665554311 1 111122333555444442 2468888875554443
Q ss_pred ccccCCCCCC------CCCeEEEE--ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeE
Q 009435 125 PSVRGEGPEA------REGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 196 (535)
Q Consensus 125 ~~~~g~~p~~------r~~hs~~~--~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~ 196 (535)
+........+ ..-..++. -+++.++++. ...++.++..+.....+.. .+..+.....
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~------------~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~ 344 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS------------RGQAFIQDVSGTYVLKVPE---PLRIRYVRRG 344 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE------------TTEEEEECTTSSBEEECSC---CSCEEEEEEC
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEE------------cCEEEEEcCCCCceEEccC---CCcceEEeee
Confidence 2210000000 01223333 3444444433 1357778887776555431 1110111222
Q ss_pred EeeCCEEEEEecCCCCCcccCceE-EEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEec
Q 009435 197 SSWKNKIIVIGGEDGHDYYLSDVH-ILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (535)
Q Consensus 197 ~~~~~~lyv~GG~~~~~~~~~~i~-~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (535)
.. +++.+++++. ...++ .+|..+.....+.. ........+..-+++.++++... .+++++|+
T Consensus 345 ~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~~----~~~~~~~~~~SpDG~~la~~~~~------~~v~~~d~ 407 (1045)
T 1k32_A 345 GD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFEE----NLGNVFAMGVDRNGKFAVVANDR------FEIMTVDL 407 (1045)
T ss_dssp SS-SEEEEEEEET------TEEEEEEEETTTCCEEECCC----CCCSEEEEEECTTSSEEEEEETT------SEEEEEET
T ss_pred Ec-CCCeEEEEEC------CCceEEEEECCCCCceEecC----CccceeeeEECCCCCEEEEECCC------CeEEEEEC
Confidence 22 5555555443 24688 89998877665531 11122222223355666666532 36999999
Q ss_pred CCCcEEEEee
Q 009435 276 DSGLWTKVIT 285 (535)
Q Consensus 276 ~~~~W~~l~~ 285 (535)
.++.-..+..
T Consensus 408 ~tg~~~~~~~ 417 (1045)
T 1k32_A 408 ETGKPTVIER 417 (1045)
T ss_dssp TTCCEEEEEE
T ss_pred CCCceEEecc
Confidence 9988776653
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=62.30 E-value=1.1e+02 Score=28.94 Aligned_cols=140 Identities=9% Similarity=0.031 Sum_probs=71.0
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCCe---EEeccccC-CCCCC-
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSHT---WISPSVRG-EGPEA- 134 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~g-~~p~~- 134 (535)
.+++||..+.+...+. ..+..+.....+.. ++.+|+.-- ....+|++|+.+.. |....... ..+..
T Consensus 96 ~v~~~d~~~g~~~~~~---~~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLL---TLPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp EEEEEECTTSCEEEEE---ECTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred eEEEEcCCCCeEEEEE---eCCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 5888998888877654 22334444444433 556777632 13479999988653 21111000 01111
Q ss_pred -CCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCC-ccE---EEeccCCCCCCCCCceeEEee-CCEEEEEec
Q 009435 135 -REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVW---KRATTSGNPPSARDSHTCSSW-KNKIIVIGG 208 (535)
Q Consensus 135 -r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t-~~W---~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG 208 (535)
.....+...++.||+.--. .+.|++|++.. .+. +.+.. ...| ..+++. ++.|||.-.
T Consensus 168 ~~~pngis~dg~~lyv~d~~-----------~~~I~~~~~~~~g~~~~~~~~~~---~~~P---~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 168 FPAANGLKRFGNFLYVSNTE-----------KMLLLRIPVDSTDKPGEPEIFVE---QTNI---DDFAFDVEGNLYGATH 230 (306)
T ss_dssp SCSEEEEEEETTEEEEEETT-----------TTEEEEEEBCTTSCBCCCEEEEE---SCCC---SSEEEBTTCCEEEECB
T ss_pred CCcCCCcCcCCCEEEEEeCC-----------CCEEEEEEeCCCCCCCccEEEec---cCCC---CCeEECCCCCEEEEeC
Confidence 1112233335678886431 35788998864 221 11111 1111 223333 677888743
Q ss_pred CCCCCcccCceEEEECCCCcEEEe
Q 009435 209 EDGHDYYLSDVHILDTDTLTWKEL 232 (535)
Q Consensus 209 ~~~~~~~~~~i~~yd~~t~~W~~v 232 (535)
. .+.|.+||+. .+...+
T Consensus 231 ~------~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 231 I------YNSVVRIAPD-RSTTII 247 (306)
T ss_dssp T------TCCEEEECTT-CCEEEE
T ss_pred C------CCeEEEECCC-CCEEEE
Confidence 2 2458999986 444433
No 260
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=62.25 E-value=70 Score=29.37 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=57.4
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeecc---CCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIK---GSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~---g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~ 113 (535)
+++...++.+|+|=| +.+|+++.....+....+. +.+|.. . -++...++++|+|=| +.+|
T Consensus 22 Ai~~~~~g~~yfFkg--------~~~Wr~~~~~~~~~p~~Is~~wpgLP~~-I-DAA~~~~~~~yfFkG-------~~yw 84 (219)
T 1hxn_A 22 AMVSDNHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGPST-V-DAAFSWEDKLYLIQD-------TKVY 84 (219)
T ss_dssp EEEECTTSCEEEEET--------TEEEESSSSSCTTCCEEGGGTCTTSCSS-C-SEEEEETTEEEEEET-------TEEE
T ss_pred EEEECCCCcEEEEeC--------CEEEEEcCCCCCCCceEhhhhccCCCCC-c-cEEEEECCcEEEecC-------CEEE
Confidence 444323456899866 4677777543322211111 123422 2 234445899999977 5799
Q ss_pred EEECCC-CeE-----Eeccc-cCCCCCC--CCCe-EEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCC
Q 009435 114 ILDTSS-HTW-----ISPSV-RGEGPEA--REGH-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 175 (535)
Q Consensus 114 ~yd~~t-~~W-----~~~~~-~g~~p~~--r~~h-s~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t 175 (535)
+|+..+ .+- +.+.. . .+|.. ...- ++... ++++|+|-| +..|+||..+
T Consensus 85 ~~~~~~~~~~~~gyPk~i~~~~-G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------------~~ywr~d~~~ 144 (219)
T 1hxn_A 85 VFLTKGGYTLVNGYPKRLEKEL-GSPPVISLEAVDAAFVCPGSSRLHIMAG-------------RRLWWLDLKS 144 (219)
T ss_dssp EEECSSSCEECTTCCEEHHHHH-CCCSSCCCSCCCEEECCTTCCEEEEEET-------------TEEEEEEGGG
T ss_pred EEeCCCCceecCCCCeehhhcc-CCCCcccccccceeEEecCCCEEEEEeC-------------CEEEEEeCCC
Confidence 999753 221 11111 1 13332 1122 22222 478999988 4578999765
No 261
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=59.76 E-value=1.5e+02 Score=30.02 Aligned_cols=184 Identities=16% Similarity=0.254 Sum_probs=99.3
Q ss_pred CCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEECCC------CeE-EeccccCCCCCCCCCeEE
Q 009435 68 VNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILDTSS------HTW-ISPSVRGEGPEAREGHSA 140 (535)
Q Consensus 68 ~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t------~~W-~~~~~~g~~p~~r~~hs~ 140 (535)
..+.|++-+ -+..|..-.-|+.+.+++.=|.+|=.++.-.-..+-.+-... ..- +.++ ..........+.
T Consensus 268 ~~spW~~t~-L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~--sey~~~AsEPCv 344 (670)
T 3ju4_A 268 HKSPWRKTD-LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIP--SEYEPDASEPCI 344 (670)
T ss_dssp TTSCCEEEE-CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECC--GGGCTTEEEEEE
T ss_pred ccCCceecc-cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeech--hhhccccccchh
Confidence 456788765 345666667899999999888887555544333333322211 111 1111 112222233455
Q ss_pred EEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCCCCc------
Q 009435 141 ALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDY------ 214 (535)
Q Consensus 141 ~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~~~~------ 214 (535)
-.+++.||+.--- ......-..+++-+.....|+.+..... .-....-.+..++.||+||-....+.
T Consensus 345 kyYdgvLyLtTRg-----t~~~~~GS~L~rs~d~Gq~w~slrfp~n--vHhtnlPFakvgD~l~mFgsERA~nEWE~G~p 417 (670)
T 3ju4_A 345 KYYDGVLYLITRG-----TRGDRLGSSLHRSRDIGQTWESLRFPHN--VHHTTLPFAKVGDDLIMFGSERAENEWEAGAP 417 (670)
T ss_dssp EEETTEEEEEEEE-----SCTTSCCCEEEEESSTTSSCEEEECTTC--CCSSCCCEEEETTEEEEEEECSSTTCSSTTCC
T ss_pred hhhCCEEEEEecC-----cCCCCCcceeeeecccCCchhheecccc--ccccCCCcceeCCEEEEEeccccccccccCCC
Confidence 6779999998531 2222344678888888899999863211 11111124567999999997643211
Q ss_pred ---cc---Cc--eEEEEC-----CCCcEEEeec---CCCCCCCceee-EEEEECCE-EEEEeccC
Q 009435 215 ---YL---SD--VHILDT-----DTLTWKELNT---SGMVLSPRAGH-STVAFGKN-LFVFGGFT 261 (535)
Q Consensus 215 ---~~---~~--i~~yd~-----~t~~W~~v~~---~g~~p~~R~~h-s~v~~~~~-iyv~GG~~ 261 (535)
+. .. +.+.+. +.-+|..+.. .|.....-.+- ++|+-++- .|||||.+
T Consensus 418 D~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd 482 (670)
T 3ju4_A 418 DDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 482 (670)
T ss_dssp CCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred cccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcc
Confidence 11 11 223332 4456777654 23222233333 44455565 56889864
No 262
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=58.08 E-value=1.5e+02 Score=29.20 Aligned_cols=230 Identities=11% Similarity=0.084 Sum_probs=108.2
Q ss_pred ceEEEEEcCCCeEEEeeccCCC--CCCCCceEEEEE-----CCEEEEEcC---C-C--C--CCCCCcEEEEECC---CC-
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSP--PTPRDSHSCTTV-----GENLYVFGG---T-D--G--MNPLRDLHILDTS---SH- 120 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~--P~~R~~hs~~~~-----~~~Iyv~GG---~-~--~--~~~~~~~~~yd~~---t~- 120 (535)
..+.++|+..+.-..+...+-. -.+....+...+ .++|+++-- . + + ....+.+.+||+. ++
T Consensus 35 g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~ 114 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK 114 (334)
T ss_dssp TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC
T ss_pred CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCC
Confidence 5688899886644443321110 112222233333 468888621 0 0 1 1124679999988 44
Q ss_pred -eEEe-ccccCC----CCCCCCC-eEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCcc---EEEeccCCCCC
Q 009435 121 -TWIS-PSVRGE----GPEAREG-HSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATTSGNPP 188 (535)
Q Consensus 121 -~W~~-~~~~g~----~p~~r~~-hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~---W~~~~~~~~~p 188 (535)
.|.. +....+ ....+++ ..=.++ ++++||.+... ...|++++++... |..-. +..
T Consensus 115 ~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~----------~~~I~rV~pdG~~~~~~~~~~---~~~ 181 (334)
T 2p9w_A 115 PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG----------MPAIARVSADGKTVSTFAWES---GNG 181 (334)
T ss_dssp CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----------SCEEEEECTTSCCEEEEEECC---CCS
T ss_pred EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC----------CCeEEEEeCCCCEEeeeeecC---CCc
Confidence 3542 110000 0000221 222333 47899965521 1558999987542 43221 122
Q ss_pred CCCCce-eEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecC--CCC-CCCc-eeeEEEEECCEEEEEeccC
Q 009435 189 SARDSH-TCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMV-LSPR-AGHSTVAFGKNLFVFGGFT 261 (535)
Q Consensus 189 ~~r~~~-s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~--g~~-p~~R-~~hs~v~~~~~iyv~GG~~ 261 (535)
..+.+. .+++. ++.|++..+ . ..+++||+.+.....+... |.. ...- -+-..+..+++++++.-..
T Consensus 182 ~~~~G~nGIv~~pdg~~Liv~~~-~------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 182 GQRPGYSGITFDPHSNKLIAFGG-P------RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp SSCCSCSEEEEETTTTEEEEESS-S------SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred ccccCcceEEEeCCCCEEEEEcC-C------CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 234334 34444 456777655 2 3489999885433122221 211 1111 1112344688886655431
Q ss_pred CCCCccCcEEEEecCCCcEEEEeeCCCCCCC--ceeeeeeee-cccCCCEEEEEcccC
Q 009435 262 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSA--RFSVAGDCL-DPLKGGVLVFIGGCN 316 (535)
Q Consensus 262 ~~~~~~~dv~~yd~~~~~W~~l~~~~~~p~~--r~~~~~~~~-~~~~~~~l~v~GG~~ 316 (535)
+.++++--..+ |......+..|.+ -.+.+.+.. ....+++||++-++-
T Consensus 255 ------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 255 ------PYAISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp ------TEEEEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECCG
T ss_pred ------CCEEEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeeec
Confidence 23555555555 9877665543432 112221111 002578899886543
No 263
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=57.54 E-value=64 Score=34.77 Aligned_cols=152 Identities=13% Similarity=0.134 Sum_probs=74.7
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCC-eEEEeecc---CCCCCCCCceEEEEE--CCEEEEEcCCCCCCC
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ-TWSQPVIK---GSPPTPRDSHSCTTV--GENLYVFGGTDGMNP 108 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~-~W~~l~~~---g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~ 108 (535)
+-++... ++.+|+|=| +.+|+++.... ......+. +.+|.. .. ++... ++++|+|=|
T Consensus 446 fDAit~~-rg~~yfFKg--------~~yWr~~~~~~~~~~P~~Is~~wp~LP~~-ID-AA~~~~~~~k~yFFkG------ 508 (631)
T 1ck7_A 446 FDGIAQI-RGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPEK-ID-AVYEAPQEEKAVFFAG------ 508 (631)
T ss_dssp CSEEEEC-SSSEEEECS--------SEEEEESCTTSCCEEEEEGGGTCTTSCSS-CS-BCCEETTTTEEEEEET------
T ss_pred cceeEec-CCcEEEEcC--------CEEEEEcCCCCCCCCceeccccCCCCCcc-ce-EEEEECCCCEEEEEec------
Confidence 3444444 445899866 46888876542 22222221 122321 22 22222 678999976
Q ss_pred CCcEEEEECCCC--eE-EeccccCCCCCC--CCCeEEE-EECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE---
Q 009435 109 LRDLHILDTSSH--TW-ISPSVRGEGPEA--REGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK--- 179 (535)
Q Consensus 109 ~~~~~~yd~~t~--~W-~~~~~~g~~p~~--r~~hs~~-~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~--- 179 (535)
+..|+|+-.+- -+ +.+...+ .|.. +...+.. ..++++|+|-| +..|+||..+..-.
T Consensus 509 -~~yWry~~~~l~~GYPk~Is~~G-~P~~~~~IDAAf~~~~~gktYFFkG-------------~~ywryd~~~~~vd~gY 573 (631)
T 1ck7_A 509 -NEYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------------DKFWRYNEVKKKMDPGF 573 (631)
T ss_dssp -TEEEEEETTEECTTCCEEGGGGT-CCTTCCCCCBCCCCTTTCEEEEEET-------------TEEEEEETTTTEECTTC
T ss_pred -CEEEEECCCccccCCCccchhcC-CCCCCCcceeEEEecCCCeEEEEEC-------------CEEEEEcCCcccccCCC
Confidence 57899985320 01 1122111 2211 2222221 13578999988 46889997655311
Q ss_pred --EeccCCCCCCCCCceeEEeeC--CEEEEEecCCCCCcccCceEEEECCCC
Q 009435 180 --RATTSGNPPSARDSHTCSSWK--NKIIVIGGEDGHDYYLSDVHILDTDTL 227 (535)
Q Consensus 180 --~~~~~~~~p~~r~~~s~~~~~--~~lyv~GG~~~~~~~~~~i~~yd~~t~ 227 (535)
.+.. .-+..+...-++...+ +++|+|-|. ..|+||..+.
T Consensus 574 Pk~i~~-~w~G~p~~iDAAf~~~~~g~~YFFkG~--------~Ywr~d~~~~ 616 (631)
T 1ck7_A 574 PKLIAD-AWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSL 616 (631)
T ss_dssp CEETTT-SCSSCCTTCCEEECCTTSCBCEEEETT--------EEECCBTTBT
T ss_pred CcchHh-hcCCCCCCCcEeEEEcCCCeEEEEECC--------EEEEEeCccc
Confidence 1111 1112222233444443 788988763 3566666543
No 264
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=57.34 E-value=1.2e+02 Score=29.73 Aligned_cols=148 Identities=17% Similarity=0.153 Sum_probs=74.9
Q ss_pred ceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCC---eEEEeeccCCCCCCCCce-EEEEE--CCEEEEEcCCCCCCC
Q 009435 35 HTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ---TWSQPVIKGSPPTPRDSH-SCTTV--GENLYVFGGTDGMNP 108 (535)
Q Consensus 35 h~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~---~W~~l~~~g~~P~~R~~h-s~~~~--~~~Iyv~GG~~~~~~ 108 (535)
..-+++...+.+||.+-... ..++++++... .|.. ..+.+..+.+. +++.. ++.|++..+
T Consensus 139 ~nDvavD~~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~---~~~~~~~~~G~nGIv~~pdg~~Liv~~~------ 204 (334)
T 2p9w_A 139 VVQSAQDRDGNSYVAFALGM-----PAIARVSADGKTVSTFAW---ESGNGGQRPGYSGITFDPHSNKLIAFGG------ 204 (334)
T ss_dssp EEEEEECTTSCEEEEEEESS-----CEEEEECTTSCCEEEEEE---CCCCSSSCCSCSEEEEETTTTEEEEESS------
T ss_pred CceeEECCCCCEEEeCCCCC-----CeEEEEeCCCCEEeeeee---cCCCcccccCcceEEEeCCCCEEEEEcC------
Confidence 33445555556999755321 45999998754 3543 11222334333 45555 446777654
Q ss_pred CCcEEEEECCCCeEEecccc--CCCCCCCCCe-E--EEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEecc
Q 009435 109 LRDLHILDTSSHTWISPSVR--GEGPEAREGH-S--AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 183 (535)
Q Consensus 109 ~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~h-s--~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~ 183 (535)
-..+++||..+-....++.. |.. ....+. . ..-.+++++++.-. .+..+++-...+ |+....
T Consensus 205 ~g~L~~fD~~~pv~~~v~~~~~G~~-~~~~~~dgilp~~~~G~vllV~~~-----------~~~~~~l~S~Dg-W~sa~~ 271 (334)
T 2p9w_A 205 PRALTAFDVSKPYAWPEPVKINGDF-GTLSGTEKIVTVPVGNESVLVGAR-----------APYAISFRSWDN-WKSANI 271 (334)
T ss_dssp SSSEEEEECSSSSCCCEECEESSCC-CCCTTEEEEEEEEETTEEEEEEEE-----------TTEEEEEECSST-TSEEEE
T ss_pred CCeEEEEcCCCCcceeecccccCCc-ccccCcccccccccCCEEEEEEcC-----------CCCEEEEECCCC-cceeEE
Confidence 25799999874322012221 211 111111 1 22357887554331 123445544444 887765
Q ss_pred CCCCCC---CCCceeEEe----eCCEEEEEecC
Q 009435 184 SGNPPS---ARDSHTCSS----WKNKIIVIGGE 209 (535)
Q Consensus 184 ~~~~p~---~r~~~s~~~----~~~~lyv~GG~ 209 (535)
.+..|. ++...+.++ .+++||+..+.
T Consensus 272 ~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 272 KKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp EEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred eeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 444333 233334434 47899998764
No 265
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=57.24 E-value=1.5e+02 Score=29.05 Aligned_cols=153 Identities=13% Similarity=0.023 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILN 172 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd 172 (535)
++.+++.|+.+ ..+.+||+.+.+-...-. ..+....-.+++.. ++.+++.|+.+ ..+.+||
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i~iwd 242 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR-----------GIIDIWD 242 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT-----------SCEEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC-----------CeEEEEE
Confidence 46777777754 468999998765432110 10011111222222 45677777732 4578889
Q ss_pred CCCccEEEeccCCCCCCCCCceeEEee-----CCEEEEEecCCCCCcccCceEEEECCCCcEEEe-ecCC-CC------C
Q 009435 173 TETFVWKRATTSGNPPSARDSHTCSSW-----KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL-NTSG-MV------L 239 (535)
Q Consensus 173 ~~t~~W~~~~~~~~~p~~r~~~s~~~~-----~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v-~~~g-~~------p 239 (535)
+.+.+....-.. +....-.+++.. ++.+++.|+.++ .+.+||+.+.+-... .... .. |
T Consensus 243 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 243 IRFNVLIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSKT------FLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp TTTTEEEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTTE------EEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred cCCccEEEEEec---CCCCceEEEEeccccCCCccEEEEEcCCC------cEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 887654332110 000001111111 345666666442 488899887653322 1110 00 0
Q ss_pred --------------CCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 240 --------------SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 240 --------------~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
....-.+++..++.+++.||.+. .|.+||+.+.+
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~~wd~~~~~ 361 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATS------SIVMFSLNELS 361 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGT------EEEEEETTCGG
T ss_pred cccccccceecccccCCceEEEEECCceEEEecCCCC------eEEEEECCCcc
Confidence 00011223444778888888643 48888887664
No 266
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=56.70 E-value=1.2e+02 Score=27.83 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=57.5
Q ss_pred ECCEEEEEcCCCCCCCCCcEEEEECCC----CeEEe----ccc-cCCCCCC----CCCeEEEE-ECCEEEEEcCCCCCCC
Q 009435 93 VGENLYVFGGTDGMNPLRDLHILDTSS----HTWIS----PSV-RGEGPEA----REGHSAAL-VGKRLFIFGGCGKSSN 158 (535)
Q Consensus 93 ~~~~Iyv~GG~~~~~~~~~~~~yd~~t----~~W~~----~~~-~g~~p~~----r~~hs~~~-~~~~lyv~GG~~~~~~ 158 (535)
.++++|+|=| +.+|+||..+ +.... +.. -..+|.. ....+... .++++|+|-|
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG------ 135 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG------ 135 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET------
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC------
Confidence 4799999987 5799998643 22211 110 0112321 22222221 2589999988
Q ss_pred CCCceeeeeEEEEECCCccEEE----eccCCCCCC-----CCCceeEEe--eCCEEEEEecCCCCCcccCceEEEECCC
Q 009435 159 TNDEVYYNDLYILNTETFVWKR----ATTSGNPPS-----ARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDT 226 (535)
Q Consensus 159 ~~~~~~~n~v~~yd~~t~~W~~----~~~~~~~p~-----~r~~~s~~~--~~~~lyv~GG~~~~~~~~~~i~~yd~~t 226 (535)
+..|+||....+... +.. +-+.. +..--++.. .++++|+|-| +..|+||..+
T Consensus 136 -------~~yw~~d~~~~~~~~gPk~I~~-~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG--------~~ywr~d~~~ 198 (225)
T 3oyo_A 136 -------NKYVRIAYDSKQLVGNIRNIGD-GFPVLNGTEFESGIDACFASHKEPEAYLFKG--------QNYVRIDFTP 198 (225)
T ss_dssp -------TEEEEEETTTTEEEEEEEEHHH-HCGGGTTSTTTTCCSEEEECSSTTEEEEEET--------TEEEEEECCT
T ss_pred -------CeEEEEECCCCeecCCCcchhh-cCCCcccccCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCc
Confidence 457899976654432 111 01111 222233333 3789999977 3578899873
No 267
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=56.68 E-value=1.2e+02 Score=27.87 Aligned_cols=30 Identities=3% Similarity=0.001 Sum_probs=19.3
Q ss_pred CCEEEEEeccCCCCCccCcEEEEecCCC-cEEEEeeC
Q 009435 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTKVITT 286 (535)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~-~W~~l~~~ 286 (535)
++++++.||.+. .|.+||+.+. .|..+...
T Consensus 317 ~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~ 347 (351)
T 3f3f_A 317 TGTILSSAGDDG------KVRLWKATYSNEFKCMSVI 347 (351)
T ss_dssp SSCCEEEEETTS------CEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEecCCC------cEEEEecCcCcchhheeeh
Confidence 456677776532 3888888764 67766543
No 268
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=56.51 E-value=1.2e+02 Score=27.70 Aligned_cols=158 Identities=8% Similarity=-0.045 Sum_probs=84.0
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~ 113 (535)
..++..+++.||+.-.. .+.+++++.....-..+... ... +. ...+.. +++||+..... ....++
T Consensus 83 ~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~-~~~--~P-~~i~vd~~~g~lyv~~~~~---~~~~I~ 149 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLFDT-GLV--NP-RGIVTDPVRGNLYWTDWNR---DNPKIE 149 (267)
T ss_dssp EEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECS-SCS--SE-EEEEEETTTTEEEEEECCS---SSCEEE
T ss_pred EEEEEecCCeEEEEECC------CCEEEEEEcCCCCEEEEEEC-CCC--Cc-cEEEEeeCCCEEEEEECCC---CCcEEE
Confidence 33333345678876431 25688888765433333211 111 11 233333 68899885321 135788
Q ss_pred EEECCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCC
Q 009435 114 ILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 191 (535)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r 191 (535)
++++....-+.+.. ... ..-..++.. +++||+.-.. .+.++++|+....-..+... ...|
T Consensus 150 ~~~~dg~~~~~~~~-~~~---~~P~gia~d~~~~~lyv~d~~-----------~~~I~~~~~~g~~~~~~~~~--~~~P- 211 (267)
T 1npe_A 150 TSHMDGTNRRILAQ-DNL---GLPNGLTFDAFSSQLCWVDAG-----------THRAECLNPAQPGRRKVLEG--LQYP- 211 (267)
T ss_dssp EEETTSCCCEEEEC-TTC---SCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTEEEEEEEEEC--CCSE-
T ss_pred EEecCCCCcEEEEE-CCC---CCCcEEEEcCCCCEEEEEECC-----------CCEEEEEecCCCceEEEecC--CCCc-
Confidence 88876543222211 111 122334443 4689987541 35788999876543333221 1111
Q ss_pred CceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 009435 192 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (535)
Q Consensus 192 ~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v 232 (535)
..++..++.||+.... .+.+.++|+.+.+....
T Consensus 212 --~gi~~d~~~lyva~~~------~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 212 --FAVTSYGKNLYYTDWK------TNSVIAMDLAISKEMDT 244 (267)
T ss_dssp --EEEEEETTEEEEEETT------TTEEEEEETTTTEEEEE
T ss_pred --eEEEEeCCEEEEEECC------CCeEEEEeCCCCCceEE
Confidence 3555668899986432 24689999998765543
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=56.49 E-value=1.3e+02 Score=32.92 Aligned_cols=98 Identities=10% Similarity=0.075 Sum_probs=54.7
Q ss_pred eeeEEEEECCCc--cE--EEeccCCCCCCCCCceeEE-eeCCEEEEEecCCCCCcccCceEEEECCC-CcEEE-eecCCC
Q 009435 165 YNDLYILNTETF--VW--KRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDT-LTWKE-LNTSGM 237 (535)
Q Consensus 165 ~n~v~~yd~~t~--~W--~~~~~~~~~p~~r~~~s~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t-~~W~~-v~~~g~ 237 (535)
.++++++|+.+. .+ +.+.... ....++.. ..++.||+..-.+.. ....|+.+|..+ ..|+. +-+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~----~~~~~s~~~~~g~~l~~~t~~~~a--~~~~L~~~d~~~~~~~~~~li~~-- 365 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE----KGVRYDVQMHGTSHLVILTNEGGA--VNHKLLIAPRGQPSDWSHVLVDH-- 365 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC----TTCCEEEEEETTTEEEEEECTTTC--TTCEEEEEETTSTTCCCCEEECC--
T ss_pred CceEEEEECCCCCCCceeEEeecCC----CCceEEEeeeeCCEEEEEeCCCCC--CCcEEEEEcCCCcccceeeEECC--
Confidence 578999999875 46 5554211 11112222 237888888654411 234799999886 67876 5431
Q ss_pred CCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEec
Q 009435 238 VLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV 275 (535)
Q Consensus 238 ~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~ 275 (535)
............++.|++..-... ...++++|+
T Consensus 366 -~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl 398 (751)
T 2xe4_A 366 -SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMA 398 (751)
T ss_dssp -CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEEC
T ss_pred -CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEec
Confidence 111122233344677776654322 456899996
No 270
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=54.98 E-value=1.6e+02 Score=28.72 Aligned_cols=22 Identities=14% Similarity=0.293 Sum_probs=16.3
Q ss_pred EEEEEecCCCCCcccCceEEEECCCCcE
Q 009435 202 KIIVIGGEDGHDYYLSDVHILDTDTLTW 229 (535)
Q Consensus 202 ~lyv~GG~~~~~~~~~~i~~yd~~t~~W 229 (535)
.+++.|+.++ .+.+||+.+...
T Consensus 240 ~~l~s~~~dg------~i~iwd~~~~~~ 261 (447)
T 3dw8_B 240 NTFVYSSSKG------TIRLCDMRASAL 261 (447)
T ss_dssp TEEEEEETTS------CEEEEETTTCSS
T ss_pred cEEEEEeCCC------eEEEEECcCCcc
Confidence 6888888654 488999887663
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=54.38 E-value=2.4e+02 Score=30.66 Aligned_cols=168 Identities=8% Similarity=-0.019 Sum_probs=85.0
Q ss_pred EEEcCCCEEEEECCcCCCCCCcceEEEEEcCCC--eE--EEeeccCCCCCCCCceEEE-EECCEEEEEcCCCCCCCCCcE
Q 009435 38 NAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ--TW--SQPVIKGSPPTPRDSHSCT-TVGENLYVFGGTDGMNPLRDL 112 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~--~W--~~l~~~g~~P~~R~~hs~~-~~~~~Iyv~GG~~~~~~~~~~ 112 (535)
...++++.|++..... ..+++|++|..+. .+ ..+.. ... ...++.. ..++.||+..-.+ ......+
T Consensus 277 ~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~--~~~--~~~~s~~~~~g~~l~~~t~~~-~a~~~~L 347 (751)
T 2xe4_A 277 YKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRP--REK--GVRYDVQMHGTSHLVILTNEG-GAVNHKL 347 (751)
T ss_dssp EECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSC--CCT--TCCEEEEEETTTEEEEEECTT-TCTTCEE
T ss_pred EECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeec--CCC--CceEEEeeeeCCEEEEEeCCC-CCCCcEE
Confidence 3445666666654322 2468999998775 56 55431 111 1112222 2378888886543 1234589
Q ss_pred EEEECCC-CeEEe-ccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEEC-------CCcc-EEEec
Q 009435 113 HILDTSS-HTWIS-PSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT-------ETFV-WKRAT 182 (535)
Q Consensus 113 ~~yd~~t-~~W~~-~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~-------~t~~-W~~~~ 182 (535)
+++|..+ ..|+. +-.. .....-......++.|++..-.+ -...++++|+ .+.. .+.+.
T Consensus 348 ~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~---------g~~~l~~~dl~~~~~~~~~g~~~~~l~ 415 (751)
T 2xe4_A 348 LIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRA---------GLTRIWTMMADSQDGVFKAGTGLREVV 415 (751)
T ss_dssp EEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEET---------TEEEEEEEECCTTTSCCCTTTCCEECC
T ss_pred EEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeC---------CEEEEEEEecccccccccCCccceEEC
Confidence 9999876 67865 3311 11111122333456666654311 1467888886 3443 44443
Q ss_pred cCCCCCCCCCceeEE-----eeC-CEEE-EEecCCCCCcccCceEEEECCCCcEEEeec
Q 009435 183 TSGNPPSARDSHTCS-----SWK-NKII-VIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 183 ~~~~~p~~r~~~s~~-----~~~-~~ly-v~GG~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
.|......... ..+ +.++ .+.+.. .-..++.||+.+++.+.+..
T Consensus 416 ----l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~----~P~~~~~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 416 ----MEEPIFTVHLVESQMLEYEEPTFRMEYSSLA----TPNTWFDVSPQDHSRTAVKV 466 (751)
T ss_dssp ----CCCSSCEEEECGGGCCCTTCSCEEEEEEETT----EEEEEEEECTTTCCEEEEEE
T ss_pred ----CCCceeEEEeccCcccCCCCCEEEEEEeCCC----CCCEEEEEECCCCcEEEEec
Confidence 12211111110 112 3333 333321 23568999999888777764
No 272
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=52.42 E-value=90 Score=33.63 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=75.0
Q ss_pred EEEEECCEEEEEcCCCCCCCCCcEEEEECCCC-eEEe--cccc-CCCCCCCCCeEEEE-ECCEEEEEcCCCCCCCCCCce
Q 009435 89 SCTTVGENLYVFGGTDGMNPLRDLHILDTSSH-TWIS--PSVR-GEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEV 163 (535)
Q Consensus 89 s~~~~~~~Iyv~GG~~~~~~~~~~~~yd~~t~-~W~~--~~~~-g~~p~~r~~hs~~~-~~~~lyv~GG~~~~~~~~~~~ 163 (535)
+++.+.+++|+|=| +.+|+++.... .... +... ..+|. ....+... .++++|+|-|
T Consensus 448 Ait~~rg~~yfFKg-------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG----------- 508 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG----------- 508 (631)
T ss_dssp EEEECSSSEEEECS-------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-----------
T ss_pred eeEecCCcEEEEcC-------CEEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-----------
Confidence 44556788999977 45777765442 1111 1111 12232 22222222 2578999977
Q ss_pred eeeeEEEEECCC---ccEEEeccCCCCCC-CCCceeEE-eeCCEEEEEecCCCCCcccCceEEEECCCCcEE-----Eee
Q 009435 164 YYNDLYILNTET---FVWKRATTSGNPPS-ARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-----ELN 233 (535)
Q Consensus 164 ~~n~v~~yd~~t---~~W~~~~~~~~~p~-~r~~~s~~-~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~-----~v~ 233 (535)
+..|+|+..+ .-=+.+...+-+.. .+...+.. ..++++|+|-| +..|+||..+.+-. .+.
T Consensus 509 --~~yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG--------~~ywryd~~~~~vd~gYPk~i~ 578 (631)
T 1ck7_A 509 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPKLIA 578 (631)
T ss_dssp --TEEEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEET--------TEEEEEETTTTEECTTCCEETT
T ss_pred --CEEEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEEC--------CEEEEEcCCcccccCCCCcchH
Confidence 4578887531 10122222121111 12222222 13689999976 35889998765311 111
Q ss_pred cCCCCCCCceeeEEEEEC--CEEEEEeccCCCCCccCcEEEEecCCCc
Q 009435 234 TSGMVLSPRAGHSTVAFG--KNLFVFGGFTDSQNLYDDLYMIDVDSGL 279 (535)
Q Consensus 234 ~~g~~p~~R~~hs~v~~~--~~iyv~GG~~~~~~~~~dv~~yd~~~~~ 279 (535)
. .-+..+..-.++.... +++|+|-|. ..|+||..+..
T Consensus 579 ~-~w~G~p~~iDAAf~~~~~g~~YFFkG~--------~Ywr~d~~~~~ 617 (631)
T 1ck7_A 579 D-AWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSLK 617 (631)
T ss_dssp T-SCSSCCTTCCEEECCTTSCBCEEEETT--------EEECCBTTBTT
T ss_pred h-hcCCCCCCCcEeEEEcCCCeEEEEECC--------EEEEEeCccce
Confidence 0 0011122223344433 788888774 36777765543
No 273
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=52.05 E-value=2.6e+02 Score=30.34 Aligned_cols=232 Identities=16% Similarity=0.231 Sum_probs=115.8
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCC----CceEEEEEC----CEEEEEcCCCCC--CC-CCcEEEEECCCCeEEeccccC
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPR----DSHSCTTVG----ENLYVFGGTDGM--NP-LRDLHILDTSSHTWISPSVRG 129 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R----~~hs~~~~~----~~Iyv~GG~~~~--~~-~~~~~~yd~~t~~W~~~~~~g 129 (535)
.+|+.+....+|+.+. ..+..+ ....+++++ +.||+..|.... .. ...+++-.-.-.+|+++....
T Consensus 46 gv~rS~D~G~tW~~i~---~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~ 122 (737)
T 2cn3_A 46 GAYRWDPSTETWIPLL---DHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPF 122 (737)
T ss_dssp CEEEEETTTTEEEECC---TTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSS
T ss_pred cEEEeCCCCCCEEECc---CccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCc
Confidence 5899998899999964 222111 223344443 578887653211 11 123444433446898865321
Q ss_pred C----CCCCCCCeEEEEE---CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCC------CC--CC---
Q 009435 130 E----GPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP------PS--AR--- 191 (535)
Q Consensus 130 ~----~p~~r~~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~------p~--~r--- 191 (535)
. +|.....+.+++. .+.||+-... + ..+|+-+-.-.+|+++...... |. .+
T Consensus 123 ~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~-------g----~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~ 191 (737)
T 2cn3_A 123 KMGGNMPGRSMGERLAIDPNDNRILYLGTRC-------G----NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDI 191 (737)
T ss_dssp CCCTTSTTTTSCCCEEECSSCTTCEEEECST-------T----CCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSB
T ss_pred ccCCCcCcccccceEEECCCCCCEEEEeecc-------C----CcEEEeCCCCcceecccCCCCCcccccCcccccccCC
Confidence 1 1111122445543 2456664310 0 2355544455789988632111 00 00
Q ss_pred CceeEEeeC----------CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE-CCEEEEEecc
Q 009435 192 DSHTCSSWK----------NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGF 260 (535)
Q Consensus 192 ~~~s~~~~~----------~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~ 260 (535)
.+.+.+.++ +.||+--.... ..+++=.-...+|+.+.. .|.....|.++.. ++.+|+..+-
T Consensus 192 ~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~-----~~v~~S~DgG~tW~~~~~---~p~~~~~~~~~~~~~~~l~~~~~d 263 (737)
T 2cn3_A 192 IGVVWVVFDKSSSTPGNPTKTIYVGVADKN-----ESIYRSTDGGVTWKAVPG---QPKGLLPHHGVLASNGMLYITYGD 263 (737)
T ss_dssp CCEEEEEECGGGSCTTSCCSCEEEEESCSS-----CCEEEESSTTSCCEECTT---CCCSSEEEEEEECTTSEEEEEEES
T ss_pred CCEEEEEcCCCCcccCCCCCEEEEEecCCC-----ccEEEEcCCCCceEECCC---CCCcccceEEEECCCCeEEEEecC
Confidence 011112221 25665321111 124433334567998873 4544444544433 6788887643
Q ss_pred CCC---CCccCcEEEEecCCCcEEEEeeCCCC-CCCceeeeeeeecccCCCEEEEEcc
Q 009435 261 TDS---QNLYDDLYMIDVDSGLWTKVITTGEG-PSARFSVAGDCLDPLKGGVLVFIGG 314 (535)
Q Consensus 261 ~~~---~~~~~dv~~yd~~~~~W~~l~~~~~~-p~~r~~~~~~~~~~~~~~~l~v~GG 314 (535)
... ......+|+++....+|+.+...+.. +..++..+...+.+...+.||+.+.
T Consensus 264 ~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 264 TCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp SCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEE
T ss_pred CCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEec
Confidence 211 11234699999999999998764321 1234544444555555567777654
No 274
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=50.24 E-value=1.2e+02 Score=27.67 Aligned_cols=141 Identities=22% Similarity=0.356 Sum_probs=71.8
Q ss_pred ECCEEEEEcCCCCCCCCCcEEEEECCCCeE--Eecccc-CCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEE
Q 009435 93 VGENLYVFGGTDGMNPLRDLHILDTSSHTW--ISPSVR-GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY 169 (535)
Q Consensus 93 ~~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~-g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~ 169 (535)
.++++|+|=| +.+|+++.....+ ..+... ..+|. ... ++...++++|+|-| +.+|
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~-~ID-AA~~~~~~~yfFkG-------------~~yw 84 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPS-TVD-AAFSWEDKLYLIQD-------------TKVY 84 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCS-SCS-EEEEETTEEEEEET-------------TEEE
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCC-Ccc-EEEEECCcEEEecC-------------CEEE
Confidence 4788999977 3566666433221 111111 12332 233 33345899999988 4578
Q ss_pred EEECCCc-c-----EEEecc-CCCCCCC----CCceeEEe-eCCEEEEEecCCCCCcccCceEEEECCCC---cEEEeec
Q 009435 170 ILNTETF-V-----WKRATT-SGNPPSA----RDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTL---TWKELNT 234 (535)
Q Consensus 170 ~yd~~t~-~-----W~~~~~-~~~~p~~----r~~~s~~~-~~~~lyv~GG~~~~~~~~~~i~~yd~~t~---~W~~v~~ 234 (535)
+|+..++ + =+.+.. .| .|.. +...+... .++++|+|-| +..|+||..+. .|.....
T Consensus 85 ~~~~~~~~~~~~gyPk~i~~~~G-~p~~~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~P~~i~~~~~g 155 (219)
T 1hxn_A 85 VFLTKGGYTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG--------RRLWWLDLKSGAQATWTELPW 155 (219)
T ss_dssp EEECSSSCEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET--------TEEEEEEGGGGGGCCCEEECC
T ss_pred EEeCCCCceecCCCCeehhhccC-CCCcccccccceeEEecCCCEEEEEeC--------CEEEEEeCCCCceEhhhcCCC
Confidence 8886421 1 122221 11 2222 22222222 2589999977 35788986542 2332221
Q ss_pred CCCCCCCceeeEEEE------------ECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 235 SGMVLSPRAGHSTVA------------FGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 235 ~g~~p~~R~~hs~v~------------~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
+ ..... ++.. .++.+|+|=|. ..|+||..+
T Consensus 156 ---~-p~~vd-Aa~~~~~~~~~~~~~~~~~~~YFFkg~--------~y~r~~~~~ 197 (219)
T 1hxn_A 156 ---P-HEKVD-GALCMEKPLGPNSCSTSGPNLYLIHGP--------NLYCYRHVD 197 (219)
T ss_dssp ---S-CSCCS-EEEEESSCSSSCCSCSSSCEEEEEETT--------EEEEESSHH
T ss_pred ---C-CCCcC-EEEEccccccccceeccCCeEEEEECC--------EEEEEeCCc
Confidence 1 12222 3333 34678888774 367887654
No 275
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=49.60 E-value=2.3e+02 Score=29.07 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=60.7
Q ss_pred cCCCEEEEECCcCCCCCCcceEEEEEcCCC----eEEEeeccCCC--CCC-CCceEEEEECCEEEEE--cCCCCCCCCCc
Q 009435 41 KGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ----TWSQPVIKGSP--PTP-RDSHSCTTVGENLYVF--GGTDGMNPLRD 111 (535)
Q Consensus 41 ~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~----~W~~l~~~g~~--P~~-R~~hs~~~~~~~Iyv~--GG~~~~~~~~~ 111 (535)
.+.+++|+-|.. .+.++++|..++ +-.+......+ +.. ..-|......+.|||. |+.++ +.-..
T Consensus 93 ~~r~~l~v~~l~------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g-~~~g~ 165 (462)
T 2ece_A 93 IERRFLIVPGLR------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEG-EGPGG 165 (462)
T ss_dssp CCSCEEEEEBTT------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTS-CSCCE
T ss_pred ccCCEEEEccCC------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCC-CCCCe
Confidence 456777776663 367999998876 33332100001 001 1224444443337773 22222 33478
Q ss_pred EEEEECCCCeEEeccccCCCCCCCCCeEE-EEECCEEEEEcCCCC-----CCCCCC---ceeeeeEEEEECCCcc
Q 009435 112 LHILDTSSHTWISPSVRGEGPEAREGHSA-ALVGKRLFIFGGCGK-----SSNTND---EVYYNDLYILNTETFV 177 (535)
Q Consensus 112 ~~~yd~~t~~W~~~~~~g~~p~~r~~hs~-~~~~~~lyv~GG~~~-----~~~~~~---~~~~n~v~~yd~~t~~ 177 (535)
+.++|..|.+-...-..+..+.. ..+.. ...+.++++.--++. .+.... ..+.+.|.+||+.+.+
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred EEEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 99999998653321111112211 22212 222344444442210 000001 1457889999998764
No 276
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=47.40 E-value=57 Score=30.12 Aligned_cols=61 Identities=16% Similarity=0.309 Sum_probs=37.5
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeEEe-----ccccCCCCC------CCCCeEEEE--ECCEEEEEcCCCCCCCCC
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTWIS-----PSVRGEGPE------AREGHSAAL--VGKRLFIFGGCGKSSNTN 160 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W~~-----~~~~g~~p~------~r~~hs~~~--~~~~lyv~GG~~~~~~~~ 160 (535)
++++|+|-| +..|+||..+++-.. +. . ..|. +..-.++.. .++++|+|-|
T Consensus 129 ~~k~yfFkG-------~~yw~~d~~~~~~~~gyPk~i~-~-g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------- 191 (227)
T 3lp9_A 129 GKEVYLFKG-------DQYARIDYGSNSMVNKEIKSIS-S-GYPCFRNTIFESGADAAFASHKTNEVYFFKD-------- 191 (227)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEESSSSCEEHH-H-HCGGGTTSGGGGCCSEEEECSSTTEEEEEET--------
T ss_pred CCEEEEEEC-------CEEEEEeCCCccccCCCCeEHH-H-CCCCccccccCCCccEEEEcCCCceEEEEEC--------
Confidence 589999987 579999987664321 11 0 1221 112223333 3579999988
Q ss_pred CceeeeeEEEEECCCc
Q 009435 161 DEVYYNDLYILNTETF 176 (535)
Q Consensus 161 ~~~~~n~v~~yd~~t~ 176 (535)
+..|+||..+.
T Consensus 192 -----~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 -----DHYARVKVTPX 202 (227)
T ss_dssp -----TEEEEEECCSS
T ss_pred -----CEEEEEECCcc
Confidence 45788887665
No 277
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=45.88 E-value=3.5e+02 Score=30.07 Aligned_cols=200 Identities=11% Similarity=-0.003 Sum_probs=94.1
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCCCCCCCcEEEEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDGMNPLRDLHILD 116 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~~~~yd 116 (535)
+++...++.+++.|+.+ ..+.+||..+.+-... .+....-.+++...+++++.|+.+ ..+.++|
T Consensus 22 ~lafspdg~~lAsgs~D------g~I~lw~~~~~~~~~~-----~~~~~~V~~l~fspg~~L~S~s~D-----~~v~lWd 85 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVT------GEVHIYGQQQVEVVIK-----LEDRSAIKEMRFVKGIYLVVINAK-----DTVYVLS 85 (902)
T ss_dssp EEEEETTTTEEEEEETT------SEEEEECSTTCEEEEE-----CSSCCCEEEEEEETTTEEEEEETT-----CEEEEEE
T ss_pred EEEECCCCCEEEEEeCC------CEEEEEeCCCcEEEEE-----cCCCCCEEEEEEcCCCEEEEEECc-----CeEEEEE
Confidence 44444334466777754 4578888766543321 111111223333335555555543 4688889
Q ss_pred CCCCeEEeccccCCCCCCCCCeEEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC-----CCCC
Q 009435 117 TSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-----NPPS 189 (535)
Q Consensus 117 ~~t~~W~~~~~~g~~p~~r~~hs~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~-----~~p~ 189 (535)
+.+.+-...-. .+ ....++.. ++..++.|+. ...+.+||+.+..-....... ..+.
T Consensus 86 ~~~~~~~~~~~---~~---~~V~~v~~sp~g~~l~sgs~-----------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~ 148 (902)
T 2oaj_A 86 LYSQKVLTTVF---VP---GKITSIDTDASLDWMLIGLQ-----------NGSMIVYDIDRDQLSSFKLDNLQKSSFFPA 148 (902)
T ss_dssp TTTCSEEEEEE---CS---SCEEEEECCTTCSEEEEEET-----------TSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred CCCCcEEEEEc---CC---CCEEEEEECCCCCEEEEEcC-----------CCcEEEEECCCCccccceeccccccccccc
Confidence 88765422110 11 11122222 3455566652 245778888876543211100 0000
Q ss_pred CC--CceeEEeeC--CEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCC---CCC---------Cc-e-eeEEEE-E
Q 009435 190 AR--DSHTCSSWK--NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM---VLS---------PR-A-GHSTVA-F 250 (535)
Q Consensus 190 ~r--~~~s~~~~~--~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~---~p~---------~R-~-~hs~v~-~ 250 (535)
.. .-.+++... ..+++.|+.+ ..+ .||+.+.+-...-.... .+. .+ . -.+++. -
T Consensus 149 ~h~~~V~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 149 ARLSPIVSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp SCCCCCCEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred cCCCCeEEEEEccCCCCEEEEEeCC------CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 10 111233332 3566676643 237 89998876433221000 000 00 1 112222 2
Q ss_pred CCEEEEEeccCCCCCccCcEEEEecCCCcEEE
Q 009435 251 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (535)
++.+++.|+.+. .|.+||+.+++-..
T Consensus 222 dg~~lasgs~Dg------~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 222 NSLHIITIHEDN------SLVFWDANSGHMIM 247 (902)
T ss_dssp TSSEEEEEETTC------CEEEEETTTCCEEE
T ss_pred CCCEEEEEECCC------eEEEEECCCCcEEE
Confidence 466777777543 48999998876543
No 278
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=44.57 E-value=2.9e+02 Score=28.75 Aligned_cols=193 Identities=10% Similarity=0.120 Sum_probs=94.2
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
..++.|+.+ ..+.+||..+.+....- .+ -...-.++.+ ++++++.||.+ ..+.++|..+.+.
T Consensus 161 ~~l~s~s~D------~~v~lwd~~~~~~~~~l-~~----H~~~V~~v~fspdg~~las~s~D-----~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 161 FRIISGSDD------NTVAIFEGPPFKFKSTF-GE----HTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTK 224 (611)
T ss_dssp CEEEEEETT------SCEEEEETTTBEEEEEE-CC----CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCE
T ss_pred eEEEEEeCC------CeEEEEECCCCeEeeee-cc----ccCceEEEEECCCCCEEEEEECC-----CcEEEEECCCCcE
Confidence 345666643 34677787665543311 11 1111222222 56777788765 3588889877654
Q ss_pred EeccccCCC---CCCCCCeEEEEE-CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe
Q 009435 123 ISPSVRGEG---PEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 198 (535)
Q Consensus 123 ~~~~~~g~~---p~~r~~hs~~~~-~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~ 198 (535)
...-..... .....-.+++.. +++.++.|+. ...+.++|+.+.+....-..+. ........+.
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~-----------D~~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~ 291 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-----------DKTIKIWNVATLKVEKTIPVGT--RIEDQQLGII 291 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCS--SGGGCEEEEE
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCceeeeecCCC--CccceeEEEE
Confidence 321100000 011111122222 4567777773 2457788988776554321111 0111122233
Q ss_pred eCCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 199 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 199 ~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
.++..++.++.++ .+..+|+.+..-..... + .... -.+++. -+++.++.|+.+. .+.+||+.+
T Consensus 292 ~~~~~l~s~s~d~------~i~~~~~~~~~~~~~~~-g--h~~~-v~~l~~spdg~~l~s~s~D~------~v~~Wd~~~ 355 (611)
T 1nr0_A 292 WTKQALVSISANG------FINFVNPELGSIDQVRY-G--HNKA-ITALSSSADGKTLFSADAEG------HINSWDIST 355 (611)
T ss_dssp ECSSCEEEEETTC------CEEEEETTTTEEEEEEC-C--CSSC-EEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred EcCCEEEEEeCCC------cEEEEeCCCCCcceEEc-C--CCCC-EEEEEEeCCCCEEEEEeCCC------cEEEEECCC
Confidence 3555666666543 37778887765322211 1 1111 112222 2566777777542 488999988
Q ss_pred CcEEE
Q 009435 278 GLWTK 282 (535)
Q Consensus 278 ~~W~~ 282 (535)
.....
T Consensus 356 ~~~~~ 360 (611)
T 1nr0_A 356 GISNR 360 (611)
T ss_dssp CCEEE
T ss_pred Cceee
Confidence 76544
No 279
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=42.76 E-value=2.6e+02 Score=27.67 Aligned_cols=18 Identities=22% Similarity=0.045 Sum_probs=12.7
Q ss_pred CceeEEee-CCEEEEEecC
Q 009435 192 DSHTCSSW-KNKIIVIGGE 209 (535)
Q Consensus 192 ~~~s~~~~-~~~lyv~GG~ 209 (535)
..|+++.. ++++|.+|-.
T Consensus 286 ~~hs~alt~~G~v~~wG~n 304 (406)
T 4d9s_A 286 WRHTMALTSDGKLYGWGWN 304 (406)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred CCEEEEEcCCCeEEEeeCC
Confidence 35676665 6789999843
No 280
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=38.86 E-value=2.5e+02 Score=26.40 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=16.3
Q ss_pred CCEEEEEcCCCCCCCCCcEEEEECCCCeE
Q 009435 94 GENLYVFGGTDGMNPLRDLHILDTSSHTW 122 (535)
Q Consensus 94 ~~~Iyv~GG~~~~~~~~~~~~yd~~t~~W 122 (535)
++.+++.|+.+ ..+.++|+.+.+.
T Consensus 87 ~~~~l~s~s~D-----~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 87 ENCFAISSSWD-----KTLRLWDLRTGTT 110 (343)
T ss_dssp STTEEEEEETT-----SEEEEEETTSSCE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCcE
Confidence 45566677654 4688889887654
No 281
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=38.23 E-value=2.4e+02 Score=25.99 Aligned_cols=164 Identities=13% Similarity=0.180 Sum_probs=79.5
Q ss_pred ceEEEEEcC-CCeEEEeeccCCCCCCCCceEEEEE-CCEEEEEcCCCCCCCCCcEEEEECCCC-eEEeccccCCCCCCCC
Q 009435 60 NQVHVFDTV-NQTWSQPVIKGSPPTPRDSHSCTTV-GENLYVFGGTDGMNPLRDLHILDTSSH-TWISPSVRGEGPEARE 136 (535)
Q Consensus 60 ~~~~~yd~~-t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p~~r~ 136 (535)
..+++||+. +..|.... +.+. ..+.+.. ++.||+.. . -..+++||+... .|.... +...
T Consensus 117 ~~l~~~d~~g~~~~~~~~-----~~~~-~~~~~~~~~g~l~vgt-~-----~~~l~~~d~~g~~~~~~~~-----~~~~- 178 (330)
T 3hxj_A 117 GHLYAINTDGTEKWRFKT-----KKAI-YATPIVSEDGTIYVGS-N-----DNYLYAINPDGTEKWRFKT-----NDAI- 178 (330)
T ss_dssp SEEEEECTTSCEEEEEEC-----SSCC-CSCCEECTTSCEEEEC-T-----TSEEEEECTTSCEEEEEEC-----SSCC-
T ss_pred CEEEEEcCCCCEEEEEcC-----CCce-eeeeEEcCCCEEEEEc-C-----CCEEEEECCCCCEeEEEec-----CCCc-
Confidence 468999987 34676532 1111 1222333 56777643 1 146899998722 365421 1111
Q ss_pred CeEEEE-ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCC-ccEEEeccCCCCCCCCCceeEEee-CCEEEEEecCCCCC
Q 009435 137 GHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHD 213 (535)
Q Consensus 137 ~hs~~~-~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t-~~W~~~~~~~~~p~~r~~~s~~~~-~~~lyv~GG~~~~~ 213 (535)
..+.+. .++.||+.. ..+++||... ..|+..... . ...+.+.. ++.||+-.-
T Consensus 179 ~~~~~~d~~g~l~v~t--------------~~l~~~d~~g~~~~~~~~~~-----~-~~~~~~~~~~g~l~v~t~----- 233 (330)
T 3hxj_A 179 TSAASIGKDGTIYFGS--------------DKVYAINPDGTEKWNFYAGY-----W-TVTRPAISEDGTIYVTSL----- 233 (330)
T ss_dssp CSCCEECTTCCEEEES--------------SSEEEECTTSCEEEEECCSS-----C-CCSCCEECTTSCEEEEET-----
T ss_pred eeeeEEcCCCEEEEEe--------------CEEEEECCCCcEEEEEccCC-----c-ceeceEECCCCeEEEEcC-----
Confidence 122333 356777743 3478888432 346554211 1 12233333 457776421
Q ss_pred cccCceEEEECCCCc-EEEeecCCCCCCCceeeEEEEE-CCEEEEEeccCCCCCccCcEEEEecCCC-cEE
Q 009435 214 YYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWT 281 (535)
Q Consensus 214 ~~~~~i~~yd~~t~~-W~~v~~~g~~p~~R~~hs~v~~-~~~iyv~GG~~~~~~~~~dv~~yd~~~~-~W~ 281 (535)
...+++||..... |..... . .... +.+.. ++.||+... ...+++||+... .|.
T Consensus 234 --~~gl~~~~~~g~~~~~~~~~-~----~~~~-~~~~~~~g~l~v~t~-------~ggl~~~d~~g~~~~~ 289 (330)
T 3hxj_A 234 --DGHLYAINPDGTEKWRFKTG-K----RIES-SPVIGNTDTIYFGSY-------DGHLYAINPDGTEKWN 289 (330)
T ss_dssp --TTEEEEECTTSCEEEEEECS-S----CCCS-CCEECTTSCEEEECT-------TCEEEEECTTSCEEEE
T ss_pred --CCeEEEECCCCCEeEEeeCC-C----Cccc-cceEcCCCeEEEecC-------CCCEEEECCCCcEEEE
Confidence 1348888875544 543321 1 1111 12233 566776422 124899997433 354
No 282
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=37.66 E-value=1.3e+02 Score=31.97 Aligned_cols=108 Identities=5% Similarity=-0.057 Sum_probs=52.4
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccE---EEeccCCC
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW---KRATTSGN 186 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W---~~~~~~~~ 186 (535)
..++++|..+++-..+........-....-...-+++.++++..... .........++++|+.+.+. ..+.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~--~~~~s~~~~i~~~d~~~g~~~~~~~l~---- 109 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSK--LWRYSYTATYYIYDLSNGEFVRGNELP---- 109 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEE--CSSSCEEEEEEEEETTTTEECCSSCCC----
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCce--eEEeecceEEEEEECCCCccccceecC----
Confidence 37999999988765543110000000111222235565555541100 00011246799999988866 3331
Q ss_pred CCCCCCceeEEeeCCEEEEEecCCCCCcccCceEEEECCCCcEEEee
Q 009435 187 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELN 233 (535)
Q Consensus 187 ~p~~r~~~s~~~~~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~ 233 (535)
.........-+++.++++. -++|+++|..+..-..+.
T Consensus 110 ---~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 110 ---RPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp ---SSBCCEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECC
T ss_pred ---cccccceECCCCCEEEEEE-------CCeEEEEeCCCCCcEEEe
Confidence 1112222223555444442 136888888777665554
No 283
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=37.60 E-value=4.3e+02 Score=28.66 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=61.9
Q ss_pred eeeEEEEECCC--ccEEEeccCCCCCCCCCceeEEeeCCEEEEEecCCC----CCcccCceEEEECCC--------CcEE
Q 009435 165 YNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDG----HDYYLSDVHILDTDT--------LTWK 230 (535)
Q Consensus 165 ~n~v~~yd~~t--~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~~~----~~~~~~~i~~yd~~t--------~~W~ 230 (535)
.+.++..|... ..|.++. .|. ...-....++.+|+....+- .......|...|+.+ ..|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKIN----MPS--DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK 341 (711)
T ss_dssp CEEEEEEECSSSSCEEEECC----SCT--TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE
T ss_pred ceeEEEEcCCCCCCcceEee----cCC--cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce
Confidence 47888888653 6677773 222 22223456899999765431 112455688998764 4698
Q ss_pred EeecCCCCCCCceeeEEEEECCEEEEEeccCCCCCccCcEEEEecCCCcEE
Q 009435 231 ELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 281 (535)
Q Consensus 231 ~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~ 281 (535)
.+-. +-..+.--.+...++.+++..-.. -...++++|+.++.|.
T Consensus 342 ~~~~---~~~~~~l~~~~~~~~~l~~~~~~~----~~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 342 ILFT---PTANEVFNFISTTKDRVFLATYDN----VVAKVVTFTLENEQWT 385 (711)
T ss_dssp EEEC---CCTTEEEEEEEECSSCEEEEEEET----TEEEEEEECEETTEEC
T ss_pred EEEC---CCCCCeEEEEEEECCEEEEEEEEC----CEEEEEEEECCCCceE
Confidence 7543 122333344555667776654322 1345899999888874
No 284
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=37.14 E-value=3.3e+02 Score=27.15 Aligned_cols=74 Identities=19% Similarity=0.068 Sum_probs=43.8
Q ss_pred eCCEEEEEec---CCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEE-EECC--EEEEEeccCCCCCccCcEEE
Q 009435 199 WKNKIIVIGG---EDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGK--NLFVFGGFTDSQNLYDDLYM 272 (535)
Q Consensus 199 ~~~~lyv~GG---~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v-~~~~--~iyv~GG~~~~~~~~~dv~~ 272 (535)
-++++||.-+ .......-+.++++|+++.+-..--. .+..-.++. .-++ .+|+..+. .++|.+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-----vg~~~~~lavs~D~~~~ly~tn~~------~~~VsV 358 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-----MGHEIDSINVSQDEKPLLYALSTG------DKTLYI 358 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEEECEEEECSSSSCEEEEEETT------TTEEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-----CCCCcceEEECCCCCeEEEEEcCC------CCeEEE
Confidence 3689999632 22222245789999999987655322 222222333 3344 46665442 356999
Q ss_pred EecCCCcEEEE
Q 009435 273 IDVDSGLWTKV 283 (535)
Q Consensus 273 yd~~~~~W~~l 283 (535)
||..+++-..-
T Consensus 359 iD~~t~k~~~~ 369 (386)
T 3sjl_D 359 HDAESGEELRS 369 (386)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCcEEEE
Confidence 99998875443
No 285
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=35.92 E-value=2.5e+02 Score=25.49 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=42.1
Q ss_pred eEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEE
Q 009435 36 TCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 36 ~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~ 113 (535)
.++....++ ++.+| .+ +.+.++|..+++-.++- . .......-.++.+ +++.++.|+.+ ..+.
T Consensus 29 ~~l~WS~~~-~lAvg-~D------~tV~iWd~~tg~~~~~~-~--~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~ 92 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LD------NSVYLWSASSGDILQLL-Q--MEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQ 92 (318)
T ss_dssp BCEEECTTS-EEEEE-ET------TEEEEEETTTCCEEEEE-E--CCSTTCCEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred eEEEECCCC-EEEEE-eC------CEEEEEECCCCCEEEEE-E--ecCCCCeEEEEEECCCCCEEEEEECC-----CcEE
Confidence 455666666 54554 32 46899999988766532 1 1111111223333 56777888765 3588
Q ss_pred EEECCCCeEE
Q 009435 114 ILDTSSHTWI 123 (535)
Q Consensus 114 ~yd~~t~~W~ 123 (535)
++|..+++-.
T Consensus 93 iw~~~~~~~~ 102 (318)
T 4ggc_A 93 LWDVQQQKRL 102 (318)
T ss_dssp EEETTTTEEE
T ss_pred EeecCCceeE
Confidence 8999887653
No 286
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=35.70 E-value=7.6 Score=24.32 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=9.6
Q ss_pred ccchhhhhhccc
Q 009435 517 DCQNAFYQSLKL 528 (535)
Q Consensus 517 ~~~~~~~~~~~~ 528 (535)
.+||+||+-|.+
T Consensus 4 ~qQnaFYevLh~ 15 (34)
T 1l6x_B 4 QCQRRFYEALHD 15 (34)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC
Confidence 479999998765
No 287
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=34.98 E-value=3e+02 Score=26.15 Aligned_cols=56 Identities=7% Similarity=0.050 Sum_probs=29.9
Q ss_pred CCEEEEEeccCCCCCccCc-EEEEecCCCcEEEEeeCCCCCCCceeeeeeeecccCCCEEEEEcccCC
Q 009435 251 GKNLFVFGGFTDSQNLYDD-LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 317 (535)
Q Consensus 251 ~~~iyv~GG~~~~~~~~~d-v~~yd~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~l~v~GG~~~ 317 (535)
++++++.|+.+ .. +.+||+.+..-...-..+... .......+ ..++.+++.|+.+.
T Consensus 206 ~g~~l~s~s~d------~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~--s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 206 KSDMVATCSQD------GTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKW--STDGSKLAVVSDKW 262 (355)
T ss_dssp TSSEEEEEETT------CSEEEEEETTTCCEEEEEECTTCC---SCEEEEEE--CTTSCEEEEEETTC
T ss_pred CCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEE--CCCCCEEEEEECCC
Confidence 56677777753 34 889999876543322211011 11222223 35677777777654
No 288
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=34.86 E-value=1.1e+02 Score=28.04 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=40.2
Q ss_pred EcCCCEEEEECCcCCCCCCcceEEEEEcCCCeEEE--eeccCCCCC------CCCceEEEE--ECCEEEEEcCCCCCCCC
Q 009435 40 IKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQTWSQ--PVIKGSPPT------PRDSHSCTT--VGENLYVFGGTDGMNPL 109 (535)
Q Consensus 40 v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~--l~~~g~~P~------~R~~hs~~~--~~~~Iyv~GG~~~~~~~ 109 (535)
...++++|+|-| +.+|+||..+++... -.+....|. +..-.++.. .++++|+|-|
T Consensus 124 ~~~~gk~yfFkG--------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG------- 188 (225)
T 3oyo_A 124 STKGKEVYLFKG--------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG------- 188 (225)
T ss_dssp CSSTTEEEEEET--------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------
T ss_pred ECCCCcEEEEeC--------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------
Confidence 345678999977 579999977665442 111101121 222334444 3789999987
Q ss_pred CcEEEEECC
Q 009435 110 RDLHILDTS 118 (535)
Q Consensus 110 ~~~~~yd~~ 118 (535)
+..|+||..
T Consensus 189 ~~ywr~d~~ 197 (225)
T 3oyo_A 189 QNYVRIDFT 197 (225)
T ss_dssp TEEEEEECC
T ss_pred CEEEEEeCC
Confidence 579999987
No 289
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=33.61 E-value=2.9e+02 Score=26.64 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=42.0
Q ss_pred EEEcCCCEEEEECCcCC----CCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCc
Q 009435 38 NAIKGGRFLYVFGGYGK----DNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRD 111 (535)
Q Consensus 38 ~~v~~~~~Iyi~GG~~~----~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~ 111 (535)
+...+++++|+....+. .....+.++++|..+.+=.. .++... -++++.- +..||+.++ +.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~-----~i~~~~-p~~ia~spdg~~l~v~n~-------~~ 326 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA-----RIPGRD-ALSMTIDQQRNLMLTLDG-------GN 326 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE-----EEECTT-CCEEEEETTTTEEEEECS-------SC
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE-----EEecCC-eeEEEECCCCCEEEEeCC-------Ce
Confidence 44566788998743111 11124689999998876433 222223 3444443 456776542 78
Q ss_pred EEEEECCCC
Q 009435 112 LHILDTSSH 120 (535)
Q Consensus 112 ~~~yd~~t~ 120 (535)
+.+||..+.
T Consensus 327 v~v~D~~t~ 335 (361)
T 2oiz_A 327 VNVYDISQP 335 (361)
T ss_dssp EEEEECSSS
T ss_pred EEEEECCCC
Confidence 999999887
No 290
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=33.43 E-value=4.3e+02 Score=27.43 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=74.3
Q ss_pred EEEEECCcCCCCCCcceEEEEEcCCCeEEEeeccCCCC--CCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 009435 45 FLYVFGGYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPP--TPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH 120 (535)
Q Consensus 45 ~Iyi~GG~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P--~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~ 120 (535)
.+++.||.+ ..+.++|..+.+....-...... .-...-.++.+ +++.++.|+.+ ..+.++|+.+.
T Consensus 203 ~~las~s~D------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-----~~v~lWd~~~~ 271 (611)
T 1nr0_A 203 SLFASTGGD------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-----KTIKIWNVATL 271 (611)
T ss_dssp SEEEEEETT------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTT
T ss_pred CEEEEEECC------CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCC
Confidence 355555543 34778887776544321010000 00111112222 56677777754 46889999888
Q ss_pred eEEeccccCCCCCCCCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe-e
Q 009435 121 TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-W 199 (535)
Q Consensus 121 ~W~~~~~~g~~p~~r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~-~ 199 (535)
+....-..+. ........+..++..++.++.+ ..+..+|+.+..-.... .+ ... .-.+++. -
T Consensus 272 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d-----------~~i~~~~~~~~~~~~~~-~g--h~~-~v~~l~~sp 334 (611)
T 1nr0_A 272 KVEKTIPVGT--RIEDQQLGIIWTKQALVSISAN-----------GFINFVNPELGSIDQVR-YG--HNK-AITALSSSA 334 (611)
T ss_dssp EEEEEEECCS--SGGGCEEEEEECSSCEEEEETT-----------CCEEEEETTTTEEEEEE-CC--CSS-CEEEEEECT
T ss_pred ceeeeecCCC--CccceeEEEEEcCCEEEEEeCC-----------CcEEEEeCCCCCcceEE-cC--CCC-CEEEEEEeC
Confidence 7654221111 1111122233355555555531 34566777665432221 11 011 1112222 2
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEe
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 232 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v 232 (535)
+++.++.|+.++ .+.++|+.+.....+
T Consensus 335 dg~~l~s~s~D~------~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 335 DGKTLFSADAEG------HINSWDISTGISNRV 361 (611)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCceeee
Confidence 567777777654 478899988765543
No 291
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=33.05 E-value=3.5e+02 Score=28.64 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=47.8
Q ss_pred eeeEEEEECCCccEEEeccCCCCCCCCCceeEEeeCCEEEEEecC--CCCCcccCceEEEECCCC--cEEEeecCCCCCC
Q 009435 165 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGE--DGHDYYLSDVHILDTDTL--TWKELNTSGMVLS 240 (535)
Q Consensus 165 ~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~--~~~~~~~~~i~~yd~~t~--~W~~v~~~g~~p~ 240 (535)
...++.+|+.+.....+... ... .......-++.||+.+.. ... ....+|..+..+. +.+.+.. ..+.
T Consensus 336 ~~~l~~~~~~~~~~~~lt~~---~~~-v~~~~~~d~~~i~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~l~~--~~~~ 407 (719)
T 1z68_A 336 YKHIHYIKDTVENAIQITSG---KWE-AINIFRVTQDSLFYSSNEFEEYP--GRRNIYRISIGSYPPSKKCVTC--HLRK 407 (719)
T ss_dssp CEEEEEESSCSTTCEECSCS---SSC-EEEEEEECSSEEEEEESCGGGCT--TCBEEEEEECSSSSCCEEESST--TTTT
T ss_pred ceEEEEEECCCCceEecccC---ceE-EEEEEEEeCCEEEEEEecCCCCC--ceEEEEEEeCCCCCCCceeccC--ccCC
Confidence 35789999988776665421 111 111122234455555432 111 2235777777554 3344432 1111
Q ss_pred Ccee-eEEE-EECCEEEEEeccCCCCCccCcEEEEecCCCcEEE
Q 009435 241 PRAG-HSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 282 (535)
Q Consensus 241 ~R~~-hs~v-~~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~ 282 (535)
.... +... .-+++.+++...... ...+++||+.+++...
T Consensus 408 ~~~~~~~~~~s~dg~~l~~~~s~~~---~p~~~l~d~~~g~~~~ 448 (719)
T 1z68_A 408 ERCQYYTASFSDYAKYYALVCYGPG---IPISTLHDGRTDQEIK 448 (719)
T ss_dssp TTBCBEEEEECGGGSSEEEEECCBS---SCEEEEECSSSCCEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCC---CCeEEEEECCCCCEEE
Confidence 2222 2222 223333333221111 1247888887776443
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=32.18 E-value=5.1e+02 Score=27.87 Aligned_cols=199 Identities=10% Similarity=0.056 Sum_probs=97.6
Q ss_pred cceEEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCC----eEEEeeccCCCCCCCCceEEEE--ECCEEEEEcCCCCCC
Q 009435 34 GHTCNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQ----TWSQPVIKGSPPTPRDSHSCTT--VGENLYVFGGTDGMN 107 (535)
Q Consensus 34 gh~~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~----~W~~l~~~g~~P~~R~~hs~~~--~~~~Iyv~GG~~~~~ 107 (535)
-+..+....++.||+.-- ....++++++.+. .-..+. ...+..| .++++ .+++||+.-.
T Consensus 408 p~gla~d~~~~~Ly~sD~------~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P---~glavD~~~g~LY~tD~----- 472 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVI-SRDIQAP---DGLAVDWIHSNIYWTDS----- 472 (699)
T ss_dssp CCCCEEETTTTEEEECCT------TTTSBEEEESCCCCC-CCCCCBC-CSCC--C---CCEECCCSSSBCEECCT-----
T ss_pred eEEEccccccCeEEEEec------CCCeEEEEecCCCCCCcceEEEE-eCCCCCc---ceEEEEeeCCcEEEEec-----
Confidence 344444444567777422 1246788887651 111110 1111111 22222 4678888632
Q ss_pred CCCcEEEEECCCCeEEeccccCCCCCCCCCeEEEE--ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC
Q 009435 108 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 185 (535)
Q Consensus 108 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~hs~~~--~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~ 185 (535)
..+.++++++....-+.+.. ..+..|+ .+++ .++.||+.-- . ....|+++++....-+.+...
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~-~~~~~P~---giavDp~~g~ly~td~-~---------~~~~I~~~~~dG~~~~~l~~~- 537 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFR-EQGSKPR---AIVVDPVHGFMYWTDW-G---------TPAKIKKGGLNGVDIYSLVTE- 537 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECC-CSSCCCC---CEECCSSSSCCEECCC-S---------SSCCEEBCCSSSCCCCEESCS-
T ss_pred cCCeEEEEecCCCceEEEEe-CCCCCcc---eEEEccCCCcEEEccc-C---------CCCeEEEEeCCCCCeeEEEeC-
Confidence 23568999987654333221 1122222 2333 2467777531 0 014577777654333222211
Q ss_pred CCCCCCCceeEEee--CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEECCEEEEEeccCCC
Q 009435 186 NPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 263 (535)
Q Consensus 186 ~~p~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~~~~iyv~GG~~~~ 263 (535)
.+.. -.++++- +++||+.-. ..+.|+++|+....-+.+.... .......++++.++.||+.-..
T Consensus 538 ~l~~---PnGlavd~~~~~LY~aD~------~~~~I~~~d~dG~~~~~~~~~~--~~~~~P~glavd~~~lywtd~~--- 603 (699)
T 1n7d_A 538 NIQW---PNGITLDLLSGRLYWVDS------KLHSISSIDVNGGNRKTILEDE--KRLAHPFSLAVFEDKVFWTDII--- 603 (699)
T ss_dssp SCSS---CCCEEECTTTCCEEEEET------TTTEEEEECSSSSCCEEECCCS--SSCSSCCCCEEETTEEEEECST---
T ss_pred CCCC---ccEEEEeccCCEEEEEec------CCCeEEEEccCCCceEEEEecC--CcCCCceEeEEECCEEEEEeCC---
Confidence 1111 1233332 578888753 2356899998765444443211 1111223455678899988632
Q ss_pred CCccCcEEEEecCCCc
Q 009435 264 QNLYDDLYMIDVDSGL 279 (535)
Q Consensus 264 ~~~~~dv~~yd~~~~~ 279 (535)
.+.|.++|..+++
T Consensus 604 ---~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 604 ---NEAIFSANRLTGS 616 (699)
T ss_dssp ---TTCEEEEETTTEE
T ss_pred ---CCeEEEEEccCCC
Confidence 2458999976654
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=31.32 E-value=5.2e+02 Score=27.76 Aligned_cols=179 Identities=9% Similarity=0.087 Sum_probs=87.4
Q ss_pred eEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC----eEEeccccCCCCCC
Q 009435 61 QVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH----TWISPSVRGEGPEA 134 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~----~W~~~~~~g~~p~~ 134 (535)
.+.++++.+.....+. +....-++++.. +++||+.--. ...|+++++.+. .-..+. ...+..|
T Consensus 387 ~I~~id~~~~~~~~~~-----~~~~~p~gla~d~~~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P 455 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLI-----PNLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVI-SRDIQAP 455 (699)
T ss_dssp C-CEECTTSCCEECCS-----CCCTTCCCCEEETTTTEEEECCTT-----TTSBEEEESCCCCC-CCCCCBC-CSCC--C
T ss_pred ceEEEeCCCCcceeee-----ccCcceEEEccccccCeEEEEecC-----CCeEEEEecCCCCCCcceEEEE-eCCCCCc
Confidence 5667777776665532 122223344443 5788877422 346889988751 111110 0011111
Q ss_pred CCCeEEEE--ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe--eCCEEEEEecCC
Q 009435 135 REGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGED 210 (535)
Q Consensus 135 r~~hs~~~--~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~--~~~~lyv~GG~~ 210 (535)
.++++ .+++||+.-.. .+.|+++++....-..+... ....| ..+++ .++.||+.--.
T Consensus 456 ---~glavD~~~g~LY~tD~~-----------~~~I~v~d~dg~~~~~l~~~-~~~~P---~giavDp~~g~ly~td~~- 516 (699)
T 1n7d_A 456 ---DGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE-QGSKP---RAIVVDPVHGFMYWTDWG- 516 (699)
T ss_dssp ---CCEECCCSSSBCEECCTT-----------TSCEEEEBSSSCCEEEECCC-SSCCC---CCEECCSSSSCCEECCCS-
T ss_pred ---ceEEEEeeCCcEEEEecc-----------CCeEEEEecCCCceEEEEeC-CCCCc---ceEEEccCCCcEEEcccC-
Confidence 12333 35788886331 24578888876654444321 11122 22333 25677775311
Q ss_pred CCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE--ECCEEEEEeccCCCCCccCcEEEEecCCCcEEEE
Q 009435 211 GHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 283 (535)
Q Consensus 211 ~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~--~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l 283 (535)
....|+++++....-+.+...+ +..|+ .+++ .+++||+.-.. .+.|+++|+....-..+
T Consensus 517 ----~~~~I~~~~~dG~~~~~l~~~~-l~~Pn---Glavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~ 577 (699)
T 1n7d_A 517 ----TPAKIKKGGLNGVDIYSLVTEN-IQWPN---GITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTI 577 (699)
T ss_dssp ----SSCCEEBCCSSSCCCCEESCSS-CSSCC---CEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEE
T ss_pred ----CCCeEEEEeCCCCCeeEEEeCC-CCCcc---EEEEeccCCEEEEEecC------CCeEEEEccCCCceEEE
Confidence 1245788877654333332211 11111 2232 25788887543 35689999876444444
No 294
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=30.76 E-value=4.6e+02 Score=28.04 Aligned_cols=70 Identities=3% Similarity=-0.117 Sum_probs=35.2
Q ss_pred CcEEEEECCCCeEEeccccCCCCCCCC-Ce--EEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEec
Q 009435 110 RDLHILDTSSHTWISPSVRGEGPEARE-GH--SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 182 (535)
Q Consensus 110 ~~~~~yd~~t~~W~~~~~~g~~p~~r~-~h--s~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~ 182 (535)
..++.||+.+++-..+-. +....... .. -...-+++..+++..... ........+++++|+.+++...+.
T Consensus 36 ~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~--~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVK--QWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp TEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEE--CSSSCEEEEEEEEETTTTEECCSS
T ss_pred CcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCee--eEEEccceEEEEEECCCCcEEEcc
Confidence 478999998887544321 11111110 01 122234554455442111 111234578899999998766554
No 295
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=30.11 E-value=5.3e+02 Score=27.50 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=34.0
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCC-Cce--EEEEECCEEEEEcCCCC----CCCCCcEEEEECCCCeEEecc
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPR-DSH--SCTTVGENLYVFGGTDG----MNPLRDLHILDTSSHTWISPS 126 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R-~~h--s~~~~~~~Iyv~GG~~~----~~~~~~~~~yd~~t~~W~~~~ 126 (535)
..++.||..+++=..+- .+...... ... -...-+++..+++..+. .+...++++||+.+++..++.
T Consensus 36 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp TEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred CcEEEEECCCCceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence 46899999988755542 22211111 011 11122444434443221 122368899999999876544
No 296
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.55 E-value=5.7e+02 Score=27.66 Aligned_cols=150 Identities=12% Similarity=0.045 Sum_probs=78.9
Q ss_pred cceEEEEEcCC--CeEEEeeccCCCCCCCCceEEEEECCEEEEEcCCCC-----CCCCCcEEEEECCC--------CeEE
Q 009435 59 TNQVHVFDTVN--QTWSQPVIKGSPPTPRDSHSCTTVGENLYVFGGTDG-----MNPLRDLHILDTSS--------HTWI 123 (535)
Q Consensus 59 ~~~~~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~-----~~~~~~~~~yd~~t--------~~W~ 123 (535)
.+.+|..|... .+|.++. .|+...-....++++|+....+- .-+-..+...|+.+ ..|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKIN------MPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK 341 (711)
T ss_dssp CEEEEEEECSSSSCEEEECC------SCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE
T ss_pred ceeEEEEcCCCCCCcceEee------cCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce
Confidence 36777777653 6677753 23332224566999999875431 11456789998765 3577
Q ss_pred eccccCCCCCC-CCCeEEEEECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEe--e-
Q 009435 124 SPSVRGEGPEA-REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS--W- 199 (535)
Q Consensus 124 ~~~~~g~~p~~-r~~hs~~~~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~--~- 199 (535)
.+-. |.. +.--.....++.|++..-. .....++++|+.++.|...... ..|.. ....... .
T Consensus 342 ~~~~----~~~~~~l~~~~~~~~~l~~~~~~---------~~~~~l~~~~~~~g~~~~~~~i-~lp~~-~~~~~~~~~~~ 406 (711)
T 4hvt_A 342 ILFT----PTANEVFNFISTTKDRVFLATYD---------NVVAKVVTFTLENEQWTKPVVL-KLPYQ-NAIFGMSSYEE 406 (711)
T ss_dssp EEEC----CCTTEEEEEEEECSSCEEEEEEE---------TTEEEEEEECEETTEECCCEEE-CCCST-TCEEEEECCTT
T ss_pred EEEC----CCCCCeEEEEEEECCEEEEEEEE---------CCEEEEEEEECCCCceEEEecc-CCCCC-eEEEEEeecCc
Confidence 5321 111 1122334445666664321 1145688899888877432100 12221 1122221 1
Q ss_pred CCEEE-EEecCCCCCcccCceEEEECCCCcEEEeec
Q 009435 200 KNKII-VIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 200 ~~~ly-v~GG~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
++.++ .+.+.. .-..++.+|+. .+++.+..
T Consensus 407 ~~~~~~~~ss~~----~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 407 EEEALITIENSI----VPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp CSCEEEEEECSS----SCCEEEEECTT-SCEEEEEC
T ss_pred CCEEEEEEecCC----CCCEEEEEeCC-CcEEEEec
Confidence 23333 344433 23568999988 77877765
No 297
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.53 E-value=4.5e+02 Score=25.85 Aligned_cols=168 Identities=10% Similarity=0.026 Sum_probs=82.8
Q ss_pred EEEEcCCCEEEEECCcCCCCCCcceEEEEEcCCCe-EEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEE
Q 009435 37 CNAIKGGRFLYVFGGYGKDNCQTNQVHVFDTVNQT-WSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLH 113 (535)
Q Consensus 37 ~~~v~~~~~Iyi~GG~~~~~~~~~~~~~yd~~t~~-W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~ 113 (535)
.+...+++.||+...... ..+++++..+.. ...+..... +....-++++.. ++.||+.-. ...++
T Consensus 176 ia~~~~g~~l~~~d~~~~-----~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~------~~~I~ 243 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGT-----HTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDS------NKNFG 243 (409)
T ss_dssp CEECTTSSEEEEEBSSTT-----CEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECT------TCEEE
T ss_pred eeEecCCCcEEEEecCCC-----ceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEEC------CCcEE
Confidence 444455565666543211 268899887543 223211001 011222333333 578998432 24799
Q ss_pred EEECCCCeEEeccccCCCCCCCCC-e-EEEEE--CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCC-CCC
Q 009435 114 ILDTSSHTWISPSVRGEGPEAREG-H-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-NPP 188 (535)
Q Consensus 114 ~yd~~t~~W~~~~~~g~~p~~r~~-h-s~~~~--~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~-~~p 188 (535)
+||+.+.........+........ + .++.. ++.||+.... .+.|++|++... ...+.... ...
T Consensus 244 ~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------~~~I~~~~~~g~-~~~~~g~~~~~g 311 (409)
T 3hrp_A 244 RFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------LSSVYKITPDGE-CEWFCGSATQKT 311 (409)
T ss_dssp EEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------TTEEEEECTTCC-EEEEEECTTCCS
T ss_pred EEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------CCEEEEEecCCC-EEEEEeCCCCCC
Confidence 999988765444211111111122 1 44444 4789987541 356888887654 22222111 000
Q ss_pred C-------C--CCceeEEee-CCEEEEEec-CCCCCcccCceEEEECCCCcEEEeec
Q 009435 189 S-------A--RDSHTCSSW-KNKIIVIGG-EDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 189 ~-------~--r~~~s~~~~-~~~lyv~GG-~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
. . ..-..+++. ++.|||.-. . .+.|.++|+.+.....+..
T Consensus 312 ~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 312 VQDGLREEALFAQPNGMTVDEDGNFYIVDGFK------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp CBCEEGGGCBCSSEEEEEECTTCCEEEEETTT------TCEEEEEETTTTEEEEEEE
T ss_pred cCCCcccccEeCCCeEEEEeCCCCEEEEeCCC------CCEEEEEECCCCEEEEEeC
Confidence 0 0 011233333 567888853 2 2458899977777666544
No 298
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=27.11 E-value=4.3e+02 Score=25.43 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=20.3
Q ss_pred CCEEEEEecCCCCCcccCceEEEECCCCcEEEeec
Q 009435 200 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 234 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~ 234 (535)
++..++.|+.++ .+.+||..+.+-..+..
T Consensus 353 ~~~~l~s~s~dg------~v~iwd~~~~~~~~~~~ 381 (447)
T 3dw8_B 353 SDSVVMTGSYNN------FFRMFDRNTKRDITLEA 381 (447)
T ss_dssp TSSEEEEECSTT------EEEEEETTTCCEEEEEC
T ss_pred CCCEEEEeccCC------EEEEEEcCCCcceeeee
Confidence 556667777553 48899999887766543
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=24.55 E-value=7.3e+02 Score=27.22 Aligned_cols=181 Identities=9% Similarity=0.076 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCeEEEeeccCCCCCCCCceEEEEE--CCEEEEEcCCCCCCCCCcEEEEECCCC----eEEeccccCCCCC
Q 009435 60 NQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTTV--GENLYVFGGTDGMNPLRDLHILDTSSH----TWISPSVRGEGPE 133 (535)
Q Consensus 60 ~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~~~~yd~~t~----~W~~~~~~g~~p~ 133 (535)
..+..++.....+..+.. ..+.-.++++. +++||+.-.. ...|+++++... ....+.. ..+..
T Consensus 404 ~~Ir~i~l~~~~~~~l~~-----~~~~~~gl~~d~~~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~-~~l~~ 472 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIP-----NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVIS-RDIQA 472 (791)
T ss_dssp SSEEEECTTSCCCEEEEC-----SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEEC-SSCSC
T ss_pred cceeEeeccCCcceeeec-----CCCceEEEeecccCCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEe-cCCCC
Confidence 346667776666665431 11222333333 5789988542 256888887642 2222211 01111
Q ss_pred CCCCeEEEE--ECCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee--CCEEEEEecC
Q 009435 134 AREGHSAAL--VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGE 209 (535)
Q Consensus 134 ~r~~hs~~~--~~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~--~~~lyv~GG~ 209 (535)
| .++++ ++++||+.-.. .+.|+++++....-+.+... .+..| ..+++. ++.||+.--.
T Consensus 473 P---~GLAvD~~~~~LY~tD~~-----------~~~I~v~~ldG~~~~~l~~~-~l~~P---~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 473 P---DGLAVDWIHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp C---CEEEEETTTTEEEEEETT-----------TTEEEEEETTSSSEEEEEEC-TTCCE---EEEEEETTTTEEEEEECS
T ss_pred c---ceeeeeecCCcEEEEecC-----------CCeEEEEeCCCCeEEEEEeC-CCCCc---ceEEEecCCCCEEEecCC
Confidence 1 23443 35789997541 35688999887665555321 12222 234443 5889987421
Q ss_pred CCCCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEE--ECCEEEEEeccCCCCCccCcEEEEecCCCcEEEEe
Q 009435 210 DGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 284 (535)
Q Consensus 210 ~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~--~~~~iyv~GG~~~~~~~~~dv~~yd~~~~~W~~l~ 284 (535)
....|+++++....-+.+...+ +..| ..+++ .+++||+.-.. .+.|+++|+....-..+.
T Consensus 535 -----~~~~I~~~~~dG~~~~~lv~~~-l~~P---~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 535 -----TPAKIKKGGLNGVDIYSLVTEN-IQWP---NGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp -----SSCEEEEEETTSCCEEEEECSS-CSCE---EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEE
T ss_pred -----CCCeEEEEecCCCceEEEEeCC-CCCc---eEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEe
Confidence 1245899998876555544311 1111 12332 36889998532 356999998765444443
No 300
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=24.45 E-value=4.7e+02 Score=25.01 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCEEEEEecCCCC----CcccCceEEEECCCCcEEEeecCCCCCCCceeeEEEEE--CCEEEEEeccCCCCCccCcEEEE
Q 009435 200 KNKIIVIGGEDGH----DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMI 273 (535)
Q Consensus 200 ~~~lyv~GG~~~~----~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~~--~~~iyv~GG~~~~~~~~~dv~~y 273 (535)
++++|+....++. ....+.++++|+++.+-... .+.+. -+.++.. +..+|+.++ +.|.+|
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-----i~~~~-p~~ia~spdg~~l~v~n~--------~~v~v~ 330 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-----IPGRD-ALSMTIDQQRNLMLTLDG--------GNVNVY 330 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-----EECTT-CCEEEEETTTTEEEEECS--------SCEEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-----EecCC-eeEEEECCCCCEEEEeCC--------CeEEEE
Confidence 5889987542211 11346799999998764332 22222 3344443 345665442 569999
Q ss_pred ecCCCcEEEEee
Q 009435 274 DVDSGLWTKVIT 285 (535)
Q Consensus 274 d~~~~~W~~l~~ 285 (535)
|.++..-+.+..
T Consensus 331 D~~t~~l~~~~~ 342 (361)
T 2oiz_A 331 DISQPEPKLLRT 342 (361)
T ss_dssp ECSSSSCEEEEE
T ss_pred ECCCCcceeeEE
Confidence 988863355544
No 301
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=24.11 E-value=3e+02 Score=27.48 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=46.8
Q ss_pred EEEEcCCCEEEEEC---CcCCCCCCcceEEEEEcCCCeEEEeeccCCCCCCCCceEEEE-ECC--EEEEEcCCCCCCCCC
Q 009435 37 CNAIKGGRFLYVFG---GYGKDNCQTNQVHVFDTVNQTWSQPVIKGSPPTPRDSHSCTT-VGE--NLYVFGGTDGMNPLR 110 (535)
Q Consensus 37 ~~~v~~~~~Iyi~G---G~~~~~~~~~~~~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~--~Iyv~GG~~~~~~~~ 110 (535)
..+..+++++|+.- +.+......+.++++|..+.+-.+- .+.+..-+++++ -++ .+|+.-+ ..+
T Consensus 285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~-----i~vg~~~~~lavs~D~~~~ly~tn~-----~~~ 354 (386)
T 3sjl_D 285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-----FEMGHEIDSINVSQDEKPLLYALST-----GDK 354 (386)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-----EEEEEEECEEEECSSSSCEEEEEET-----TTT
T ss_pred eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE-----EECCCCcceEEECCCCCeEEEEEcC-----CCC
Confidence 33445788999963 3233333457899999999876542 222222233333 344 4676533 246
Q ss_pred cEEEEECCCCeEEe
Q 009435 111 DLHILDTSSHTWIS 124 (535)
Q Consensus 111 ~~~~yd~~t~~W~~ 124 (535)
++.+||..+++-..
T Consensus 355 ~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 355 TLYIHDAESGEELR 368 (386)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eEEEEECCCCcEEE
Confidence 89999999987543
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=22.44 E-value=5.5e+02 Score=25.06 Aligned_cols=149 Identities=7% Similarity=-0.029 Sum_probs=78.4
Q ss_pred CCcEEEEECC--CCeEEeccccCC-C-CCCCCCeEEEEEC---C--EEEEEcCCCCCCCCCCceeeeeEEEEECCCccEE
Q 009435 109 LRDLHILDTS--SHTWISPSVRGE-G-PEAREGHSAALVG---K--RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK 179 (535)
Q Consensus 109 ~~~~~~yd~~--t~~W~~~~~~g~-~-p~~r~~hs~~~~~---~--~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~ 179 (535)
...+++||+. +.+-+++...+. . +..-.-|++.... + +|||+.-. .....-.++.+|+......
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~-------~~~s~ielf~~d~~~~~~~ 154 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP-------GSSSTVEVFKFQEEEKSLL 154 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS-------TTCCEEEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC-------CCCCeEEEEEEECCCCEEE
Confidence 3467888876 345555555442 1 1233446665543 3 58887431 0112466888888877766
Q ss_pred EeccCCCCCCCCCceeEEeeCCEEEEEecC--CC---------CCcccCceEEEECCCCcEEEeecCCCCCCCceeeEEE
Q 009435 180 RATTSGNPPSARDSHTCSSWKNKIIVIGGE--DG---------HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV 248 (535)
Q Consensus 180 ~~~~~~~~p~~r~~~s~~~~~~~lyv~GG~--~~---------~~~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v 248 (535)
.+......+..+..-..+.-++.+|+-+.. .. .......+++||+. +.+.+.. ..... -.++
T Consensus 155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~----~l~~p-NGia 227 (355)
T 3sre_A 155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE----GFDFA-NGIN 227 (355)
T ss_dssp EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE----EESSE-EEEE
T ss_pred EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec----CCccc-Ccce
Confidence 665433334444444455557888886532 11 01123568889884 3443321 01111 1223
Q ss_pred EE-C-CEEEEEeccCCCCCccCcEEEEecCC
Q 009435 249 AF-G-KNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 249 ~~-~-~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
.. + ..+|+.--. ...|++|++..
T Consensus 228 ~spDg~~lYvadt~------~~~I~~~~~~~ 252 (355)
T 3sre_A 228 ISPDGKYVYIAELL------AHKIHVYEKHA 252 (355)
T ss_dssp ECTTSSEEEEEEGG------GTEEEEEEECT
T ss_pred ECCCCCEEEEEeCC------CCeEEEEEECC
Confidence 22 3 468876543 34699999864
No 303
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=22.21 E-value=7.7e+02 Score=26.67 Aligned_cols=207 Identities=12% Similarity=0.120 Sum_probs=100.3
Q ss_pred eEEEEEcCCCeEEEeeccC---CCCC---CCCceEEEEE----CCEEEEEcCCCC-CCCCCcEEEEECCCCeEEeccccC
Q 009435 61 QVHVFDTVNQTWSQPVIKG---SPPT---PRDSHSCTTV----GENLYVFGGTDG-MNPLRDLHILDTSSHTWISPSVRG 129 (535)
Q Consensus 61 ~~~~yd~~t~~W~~l~~~g---~~P~---~R~~hs~~~~----~~~Iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~g 129 (535)
-+|+-+-.-.+|+.+...- .++. ......+.++ .+.+|+..|... ......+++-+-.-.+|+++....
T Consensus 44 gv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~ 123 (763)
T 3a0f_A 44 GTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPV 123 (763)
T ss_dssp CEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSS
T ss_pred cEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCc
Confidence 4788777788999975210 0011 1222333333 257888765311 111233444333346898876321
Q ss_pred CCC---CCCC-CeEEEEE---CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCccEEEeccCCCCCCCCCceeEEee---
Q 009435 130 EGP---EARE-GHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--- 199 (535)
Q Consensus 130 ~~p---~~r~-~hs~~~~---~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~~W~~~~~~~~~p~~r~~~s~~~~--- 199 (535)
..+ ..|. ...+++. .+.+|+.+. ...+++-+-.-.+|+++...............+.+
T Consensus 124 ~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~------------~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~ 191 (763)
T 3a0f_A 124 PMGANDMGRNGGERLAVNPHWTDELWFGSR------------TQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPK 191 (763)
T ss_dssp CCCTTSTTTTSBCCEEECTTSTTCEEEECS------------SSCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSS
T ss_pred ccCccccCccccceEEECCCCCCEEEEEeC------------CCcEEEECCCCcCccccccCcccCCCccceEEEEECCC
Confidence 111 1222 1334443 256777532 12455555556789998732111111122222222
Q ss_pred -CCEEEEEecCCCCCcccCceEEEECCCCcEEEeecCCCCC-----------------CCceeeEEEEE-CCEEEEEecc
Q 009435 200 -KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL-----------------SPRAGHSTVAF-GKNLFVFGGF 260 (535)
Q Consensus 200 -~~~lyv~GG~~~~~~~~~~i~~yd~~t~~W~~v~~~g~~p-----------------~~R~~hs~v~~-~~~iyv~GG~ 260 (535)
.+.+|+.....+ .+++=+=.-.+|+.+....... .++..+.++.. ++.+|+....
T Consensus 192 ~~~~~~~~~~~~g------~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 265 (763)
T 3a0f_A 192 NVGTAYVASHAVG------GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSD 265 (763)
T ss_dssp STTCEEEEESSTT------CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEES
T ss_pred CCCEEEEEEeCCC------eEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEecc
Confidence 245776543211 2444333456799986311100 22334444333 5678887432
Q ss_pred CC--CCCccCcEEEEecCCCcEEEEee
Q 009435 261 TD--SQNLYDDLYMIDVDSGLWTKVIT 285 (535)
Q Consensus 261 ~~--~~~~~~dv~~yd~~~~~W~~l~~ 285 (535)
.. .......+++.+-...+|+.+.+
T Consensus 266 ~~~~~~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 266 APGPWGVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp SCSSSCCCCEEEEEEETTTTEEEECCT
T ss_pred CCCCCCCcceeEEEEeCCCCceEECCC
Confidence 10 01123468999888899999864
No 304
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=21.27 E-value=5.2e+02 Score=24.37 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=35.5
Q ss_pred CCEEEEEecCCCCCcccCc-eEEEECCCCcEEEeecCCCCCCCceeeEEEE-ECCEEEEEeccCCCCCccCcEEEEecCC
Q 009435 200 KNKIIVIGGEDGHDYYLSD-VHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDS 277 (535)
Q Consensus 200 ~~~lyv~GG~~~~~~~~~~-i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v~-~~~~iyv~GG~~~~~~~~~dv~~yd~~~ 277 (535)
++.+++.|+.++ . +.+||+.+.+-...-..+. ....-.+++. -++++++.|+.+ ..+.+||+.+
T Consensus 206 ~g~~l~s~s~d~------~~v~iwd~~~~~~~~~~~~g~--h~~~v~~~~~s~~~~~l~s~s~d------~~v~iw~~~~ 271 (355)
T 3vu4_A 206 KSDMVATCSQDG------TIIRVFKTEDGVLVREFRRGL--DRADVVDMKWSTDGSKLAVVSDK------WTLHVFEIFN 271 (355)
T ss_dssp TSSEEEEEETTC------SEEEEEETTTCCEEEEEECTT--CCSCEEEEEECTTSCEEEEEETT------CEEEEEESSC
T ss_pred CCCEEEEEeCCC------CEEEEEECCCCcEEEEEEcCC--CCCcEEEEEECCCCCEEEEEECC------CEEEEEEccC
Confidence 667788887653 3 7788988765333211110 1111122222 256777777753 3478888765
Q ss_pred C
Q 009435 278 G 278 (535)
Q Consensus 278 ~ 278 (535)
.
T Consensus 272 ~ 272 (355)
T 3vu4_A 272 D 272 (355)
T ss_dssp C
T ss_pred C
Confidence 4
No 305
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=21.17 E-value=6.7e+02 Score=25.60 Aligned_cols=121 Identities=13% Similarity=0.069 Sum_probs=58.4
Q ss_pred CCEEEEEcCCCCCCCCCCceeeeeEEEEECCCc----cEEEeccCCCC--C-CCCCceeEEee-CCEEEEE--ecCCCCC
Q 009435 144 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF----VWKRATTSGNP--P-SARDSHTCSSW-KNKIIVI--GGEDGHD 213 (535)
Q Consensus 144 ~~~lyv~GG~~~~~~~~~~~~~n~v~~yd~~t~----~W~~~~~~~~~--p-~~r~~~s~~~~-~~~lyv~--GG~~~~~ 213 (535)
..+|||-|.. .+.|+++|+.++ +-.+.-..... . -...-|+.... ++ |||- |+..+
T Consensus 95 r~~l~v~~l~-----------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g-- 160 (462)
T 2ece_A 95 RRFLIVPGLR-----------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEG-- 160 (462)
T ss_dssp SCEEEEEBTT-----------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTS--
T ss_pred CCEEEEccCC-----------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCC--
Confidence 4567776663 367999998766 33332200000 0 00112433333 55 7763 33222
Q ss_pred cccCceEEEECCCCcEEEeecCCCCCCCceeeEEE-EECCEEEEEe----------ccCCCC---CccCcEEEEecCCCc
Q 009435 214 YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFG----------GFTDSQ---NLYDDLYMIDVDSGL 279 (535)
Q Consensus 214 ~~~~~i~~yd~~t~~W~~v~~~g~~p~~R~~hs~v-~~~~~iyv~G----------G~~~~~---~~~~dv~~yd~~~~~ 279 (535)
..-+.+.++|.+|++-..--..+..+.. ....+. .-+.++++.- |+.... ...+.|.+||+.+.+
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 2357799999998764432221111211 111122 2233333333 222211 346789999998864
No 306
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=20.80 E-value=25 Score=22.55 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.6
Q ss_pred ccchhhhhhccc
Q 009435 517 DCQNAFYQSLKL 528 (535)
Q Consensus 517 ~~~~~~~~~~~~ 528 (535)
.-||+||+-|.+
T Consensus 9 ~QQnaFYevLh~ 20 (38)
T 1zda_A 9 QQQRRFYEALHD 20 (38)
T ss_dssp TSSHHHHHHHSC
T ss_pred HHHHHHHHHHcC
Confidence 458999998765
Done!