Query 009436
Match_columns 535
No_of_seqs 287 out of 1363
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 13:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02742 Probable galacturonos 100.0 1E-152 3E-157 1215.3 44.9 533 1-535 1-534 (534)
2 PLN02829 Probable galacturonos 100.0 4E-135 8E-140 1091.2 37.8 468 63-535 170-638 (639)
3 PLN02910 polygalacturonate 4-a 100.0 6E-135 1E-139 1087.9 37.2 486 45-535 163-656 (657)
4 PLN02769 Probable galacturonos 100.0 1E-123 2E-128 1008.6 37.9 459 63-535 165-629 (629)
5 PLN02718 Probable galacturonos 100.0 6E-120 1E-124 975.6 37.0 443 68-535 157-602 (603)
6 PLN02523 galacturonosyltransfe 100.0 6E-115 1E-119 927.3 44.0 460 72-535 78-558 (559)
7 PLN02870 Probable galacturonos 100.0 4E-112 8E-117 903.6 29.8 423 102-535 90-531 (533)
8 PLN02867 Probable galacturonos 100.0 4E-111 1E-115 898.5 30.8 423 109-535 93-534 (535)
9 PLN02659 Probable galacturonos 100.0 1E-110 2E-115 892.2 30.0 401 135-535 113-532 (534)
10 cd06429 GT8_like_1 GT8_like_1 100.0 4.4E-56 9.6E-61 447.0 22.1 255 230-523 1-257 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 3.1E-43 6.7E-48 366.3 21.3 263 227-530 23-293 (334)
12 cd06431 GT8_LARGE_C LARGE cata 100.0 1.8E-40 3.8E-45 337.9 20.0 262 231-531 4-277 (280)
13 cd00505 Glyco_transf_8 Members 100.0 8E-39 1.7E-43 318.8 19.8 237 230-507 1-245 (246)
14 cd04194 GT8_A4GalT_like A4GalT 100.0 1.2E-38 2.6E-43 316.9 18.2 238 230-508 1-248 (248)
15 COG1442 RfaJ Lipopolysaccharid 100.0 1.2E-36 2.7E-41 313.9 20.3 259 229-530 2-268 (325)
16 PF01501 Glyco_transf_8: Glyco 100.0 1.8E-35 3.9E-40 289.0 15.8 245 231-509 1-249 (250)
17 cd06432 GT8_HUGT1_C_like The C 100.0 2E-31 4.4E-36 267.2 15.7 233 231-502 2-240 (248)
18 cd06430 GT8_like_2 GT8_like_2 100.0 5.7E-31 1.2E-35 269.3 18.6 250 230-525 1-276 (304)
19 cd02537 GT8_Glycogenin Glycoge 99.9 8.1E-25 1.8E-29 218.0 17.2 213 239-523 13-238 (240)
20 PLN00176 galactinol synthase 99.9 1.2E-23 2.6E-28 218.3 19.8 239 239-525 36-294 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.7 1.5E-17 3.3E-22 169.2 9.4 141 336-510 76-242 (278)
22 KOG1879 UDP-glucose:glycoprote 99.3 5.5E-12 1.2E-16 145.0 7.4 255 226-522 1178-1443(1470)
23 COG5597 Alpha-N-acetylglucosam 97.9 8.4E-06 1.8E-10 83.4 3.6 162 340-519 155-352 (368)
24 PF03407 Nucleotid_trans: Nucl 94.0 0.11 2.4E-06 50.5 6.1 141 337-502 48-202 (212)
25 PLN03182 xyloglucan 6-xylosylt 94.0 0.35 7.5E-06 52.2 10.2 161 334-520 179-376 (429)
26 PF06637 PV-1: PV-1 protein (P 88.5 8.9 0.00019 41.2 13.2 39 5-43 8-54 (442)
27 PF11051 Mannosyl_trans3: Mann 82.9 3.8 8.1E-05 42.0 7.2 31 347-377 84-114 (271)
28 COG4575 ElaB Uncharacterized c 82.1 5.7 0.00012 35.2 6.9 75 101-179 11-86 (104)
29 PLN03181 glycosyltransferase; 80.1 13 0.00029 40.6 10.3 35 334-369 180-214 (453)
30 PF05637 Glyco_transf_34: gala 76.7 1.6 3.5E-05 44.0 2.2 23 351-373 74-96 (239)
31 PF03071 GNT-I: GNT-I family; 73.8 11 0.00025 41.3 7.9 117 229-375 94-213 (434)
32 PRK10132 hypothetical protein; 73.3 17 0.00037 32.5 7.5 76 101-180 15-90 (108)
33 PF10819 DUF2564: Protein of u 69.3 17 0.00037 30.6 6.1 71 105-176 6-78 (79)
34 PRK09039 hypothetical protein; 62.9 87 0.0019 33.4 11.7 16 20-35 20-35 (343)
35 cd02514 GT13_GLCNAC-TI GT13_GL 62.6 28 0.0006 37.1 7.8 115 230-375 2-119 (334)
36 KOG1950 Glycosyl transferase, 60.3 14 0.0003 39.6 5.2 149 351-508 122-288 (369)
37 KOG1928 Alpha-1,4-N-acetylgluc 59.3 4.8 0.0001 43.3 1.4 32 340-375 228-259 (409)
38 PLN02742 Probable galacturonos 59.0 68 0.0015 36.3 10.3 69 73-143 97-165 (534)
39 PRK05529 cell division protein 58.7 7.8 0.00017 39.5 2.8 12 362-373 213-224 (255)
40 cd00761 Glyco_tranf_GTA_type G 57.2 92 0.002 26.2 9.1 40 235-276 5-44 (156)
41 cd02515 Glyco_transf_6 Glycosy 55.7 2.5E+02 0.0054 29.2 13.0 119 350-480 120-248 (271)
42 PRK10404 hypothetical protein; 55.5 53 0.0011 29.0 7.1 80 97-180 4-84 (101)
43 PF11464 Rbsn: Rabenosyn Rab b 54.0 53 0.0012 24.6 5.7 39 81-119 1-39 (42)
44 PF10073 DUF2312: Uncharacteri 45.0 63 0.0014 27.1 5.5 44 105-160 4-47 (74)
45 PF03414 Glyco_transf_6: Glyco 40.3 3E+02 0.0065 29.5 11.0 120 348-479 183-312 (337)
46 COG4068 Uncharacterized protei 39.8 18 0.00038 29.0 1.4 15 20-34 46-60 (64)
47 PHA00407 phage lambda Rz1-like 39.8 19 0.00041 30.2 1.7 63 6-73 18-80 (84)
48 PF06103 DUF948: Bacterial pro 39.5 1E+02 0.0022 25.9 6.3 60 105-172 22-81 (90)
49 PF05478 Prominin: Prominin; 37.8 1.9E+02 0.0041 34.5 10.2 66 133-202 237-302 (806)
50 COG1842 PspA Phage shock prote 36.9 4.5E+02 0.0099 26.5 11.4 86 92-189 75-160 (225)
51 KOG3232 Vacuolar assembly/sort 36.3 2.2E+02 0.0048 27.8 8.4 119 71-200 33-157 (203)
52 PF05957 DUF883: Bacterial pro 35.8 1.5E+02 0.0033 25.2 6.9 75 102-180 2-77 (94)
53 PF04488 Gly_transf_sug: Glyco 35.7 19 0.0004 31.1 1.2 36 335-374 61-97 (103)
54 PF15290 Syntaphilin: Golgi-lo 35.1 53 0.0012 34.1 4.4 41 130-170 119-170 (305)
55 PF04765 DUF616: Protein of un 34.9 53 0.0011 34.6 4.5 45 343-387 142-188 (305)
56 PRK13694 hypothetical protein; 34.8 1.1E+02 0.0024 26.2 5.5 44 104-159 11-54 (83)
57 PHA01346 hypothetical protein 33.8 1.6E+02 0.0034 22.2 5.5 44 100-147 5-48 (53)
58 PF14812 PBP1_TM: Transmembran 33.4 3.7 8.1E-05 34.8 -3.4 12 18-29 66-77 (81)
59 PF11932 DUF3450: Protein of u 33.2 1.4E+02 0.0029 30.2 7.1 138 66-211 46-201 (251)
60 TIGR02977 phageshock_pspA phag 32.5 3.2E+02 0.007 27.0 9.5 104 73-178 28-135 (219)
61 PF12273 RCR: Chitin synthesis 30.7 25 0.00055 31.9 1.2 15 21-35 2-16 (130)
62 PRK15048 methyl-accepting chem 30.0 4.1E+02 0.0089 29.6 10.9 41 161-206 345-385 (553)
63 PF10828 DUF2570: Protein of u 28.9 3.2E+02 0.0069 24.1 7.9 65 73-140 43-108 (110)
64 COG2332 CcmE Cytochrome c-type 28.6 60 0.0013 30.7 3.3 31 10-40 3-33 (153)
65 CHL00036 ycf4 photosystem I as 28.4 44 0.00096 32.6 2.4 30 12-41 15-44 (184)
66 cd06423 CESA_like CESA_like is 27.6 3.6E+02 0.0078 23.1 8.2 32 239-272 9-40 (180)
67 KOG0994 Extracellular matrix g 26.7 4.2E+02 0.0091 33.1 10.2 61 49-114 1423-1483(1758)
68 PF03314 DUF273: Protein of un 26.4 41 0.0009 33.7 1.9 24 346-369 34-57 (222)
69 PRK02542 photosystem I assembl 26.3 52 0.0011 32.2 2.5 31 12-42 19-49 (188)
70 PF08664 YcbB: YcbB domain; I 25.6 3.1E+02 0.0067 25.5 7.4 59 130-190 15-87 (134)
71 PF02203 TarH: Tar ligand bind 25.2 4.9E+02 0.011 23.6 8.9 49 74-122 50-102 (171)
72 COG4585 Signal transduction hi 25.1 2.4E+02 0.0052 29.6 7.6 22 190-211 272-293 (365)
73 PF00611 FCH: Fes/CIP4, and EF 24.0 2.9E+02 0.0063 22.5 6.4 24 155-178 64-87 (91)
74 KOG0994 Extracellular matrix g 23.8 3.8E+02 0.0082 33.5 9.2 26 96-121 1526-1551(1758)
75 PF12575 DUF3753: Protein of u 23.3 91 0.002 26.0 3.0 23 15-37 44-66 (72)
76 PF02392 Ycf4: Ycf4; InterPro 22.9 73 0.0016 31.1 2.8 30 12-41 12-41 (180)
77 PF04012 PspA_IM30: PspA/IM30 22.4 6.3E+02 0.014 24.6 9.5 101 74-176 28-132 (221)
78 PRK12302 bssR biofilm formatio 22.3 2.5E+02 0.0055 25.2 5.7 70 90-159 23-98 (127)
79 PF11466 Doppel: Prion-like pr 22.2 64 0.0014 22.3 1.6 17 13-29 2-18 (30)
80 PF10153 DUF2361: Uncharacteri 21.4 67 0.0015 29.0 2.1 41 106-148 1-41 (114)
81 PHA02975 hypothetical protein; 21.3 1E+02 0.0022 25.4 2.9 23 15-37 40-62 (69)
82 COG3750 Uncharacterized protei 21.2 5.2E+02 0.011 22.0 8.1 48 103-162 12-59 (85)
83 PRK14156 heat shock protein Gr 21.1 2.1E+02 0.0046 27.8 5.6 28 63-90 28-55 (177)
84 PF04508 Pox_A_type_inc: Viral 20.7 1.2E+02 0.0026 19.9 2.5 17 105-121 4-20 (23)
85 cd04190 Chitin_synth_C C-termi 20.5 1.9E+02 0.004 28.5 5.3 30 241-270 12-49 (244)
86 PF10799 YliH: Biofilm formati 20.5 4.1E+02 0.0088 24.2 6.7 80 73-159 2-98 (127)
87 PRK05415 hypothetical protein; 20.4 87 0.0019 33.5 3.1 26 9-34 59-84 (341)
No 1
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=1.4e-152 Score=1215.28 Aligned_cols=533 Identities=75% Similarity=1.235 Sum_probs=517.3
Q ss_pred CCCcccccccccchhhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchhhccchhhhhhhccccccccccChhhHHHH
Q 009436 1 MRRRAAEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQVERKVLNFTKEILSATSFSRQ 80 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (535)
|||||+++|||+|||+++|||+++|+|+++||++|+ |+++++.+.+|+.+++++.+.+..+|+|+|+|++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (534)
T PLN02742 1 MRRRPADFRRPVRRRLSQWIWWLLGGFSVLGLVLFV--HKHSEIEPRPPLSERNYRKEEVNHEGLNFTEEMLSATSFSRQ 78 (534)
T ss_pred CCCchhhcccchhcchhhhHHHHHHHHHHHHHHHHH--hccCCCCCCCCCccccccccccccccccchhhhcChHHHHHH
Confidence 899999999999999999999999999999999999 666788899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHH
Q 009436 81 LAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMT 160 (535)
Q Consensus 81 ~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k 160 (535)
|||||||||||++|||++||++|++||+++|||+||+||+|++|++++++++++++|++|+++|++||+++|||+++++|
T Consensus 79 l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~k 158 (534)
T PLN02742 79 LADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLHYDSATTIMT 158 (534)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999777999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHHhCchhhchhcccCCCCCCcCCCceeEEEEeCCCc
Q 009436 161 MKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVP 240 (535)
Q Consensus 161 l~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~~~ihiv~~sDnvl 240 (535)
||||++++|||+++|++|++|++||||+|+|||||||+||||+|||++++++++.++++++++|+||+++|||+|||||+
T Consensus 159 lr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvl 238 (534)
T PLN02742 159 LKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNLYHFCVFSDNIL 238 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCCcceEEEEeccch
Confidence 99999999999999999999999999999999999999999999999999987777778999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhhhccCccceecc
Q 009436 241 ATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFG 320 (535)
Q Consensus 241 aasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l~~~~~~~~yf~ 320 (535)
|+|||||||+.|+++|+++|||||||+.++.+|++||..|++++++|+|+++++|+|++.+|+||++|+++++++.|||+
T Consensus 239 AasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~~~~~~~yf~ 318 (534)
T PLN02742 239 ATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSDTQSYYFS 318 (534)
T ss_pred hhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc-cCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhh
Q 009436 321 EYQDL-RVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKY 399 (535)
Q Consensus 321 ~~~~~-~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~ 399 (535)
..... ..+.++|+|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||+..|+++.+|
T Consensus 319 ~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~y 398 (534)
T PLN02742 319 GSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKY 398 (534)
T ss_pred cccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhh
Confidence 76633 36778999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred ccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhccCeeeccccccccc
Q 009436 400 LNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLG 479 (535)
Q Consensus 400 ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~i~~Ld~~WN~~~ 479 (535)
+||++|.++++|+++.||||+|||||||++||++++|+.++.|++.+.+..+|++|+||+++++|+|++.+||.+||+.|
T Consensus 399 LnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~gaLpp~LLaF~g~~~~LD~rWNv~g 478 (534)
T PLN02742 399 LNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHVLG 478 (534)
T ss_pred hcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhccccccccccccchHHHHHcCcceecChhheecc
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchhhccCC
Q 009436 480 LGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535 (535)
Q Consensus 480 ~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~~cn~~ 535 (535)
+||+++++...+++|+||||+|++|||.+.++++|+++|++|+++++||+++||||
T Consensus 479 LG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cni~ 534 (534)
T PLN02742 479 LGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNFH 534 (534)
T ss_pred cccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCCCC
Confidence 99988887788999999999999999999999999999999999999999999997
No 2
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=3.6e-135 Score=1091.18 Aligned_cols=468 Identities=47% Similarity=0.855 Sum_probs=452.8
Q ss_pred ccccccccccChhhHHHHHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHH
Q 009436 63 KVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSS 142 (535)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (535)
+.-.-|+|.+++|++||+|||||||||||++|||++||++|++||+++|||+||+||+|++|++| |+++.++|++|++
T Consensus 170 ~~~~~~~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~l--p~~~~~~~~~m~~ 247 (639)
T PLN02829 170 KTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDL--PKNANEKLKAMEQ 247 (639)
T ss_pred ccccccccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCC--ChhHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHHhCchhhchhcccCCCC
Q 009436 143 LIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSP 222 (535)
Q Consensus 143 ~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~ 222 (535)
+|++||+++|||+++++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||+++++++++ |+++
T Consensus 248 ~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~---p~~~ 324 (639)
T PLN02829 248 TLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQF---PNQE 324 (639)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccC---CChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888 5778
Q ss_pred CCcCCCceeEEEEeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccc
Q 009436 223 RLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASY 302 (535)
Q Consensus 223 ~l~d~~~ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y 302 (535)
+|+||+++|||+|||||+|+||||||++.|+++|+++|||||||++|+.+|++||.+||+++|+|||++||+|+|++.+|
T Consensus 325 ~l~dp~l~Hy~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~ 404 (639)
T PLN02829 325 KLEDPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSY 404 (639)
T ss_pred hccCCccceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhccCccceeccccccc-cCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCC
Q 009436 303 APIVKQLLNADSRAIYFGEYQDL-RVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGN 381 (535)
Q Consensus 303 ~pvl~~l~~~~~~~~yf~~~~~~-~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~ 381 (535)
+||++|++++.++.|||+..... ..++++|||+|+|+++|+|||||++||+++||||||+|+||++||++||++||+|+
T Consensus 405 ~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gk 484 (639)
T PLN02829 405 SPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGN 484 (639)
T ss_pred cHHHHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCc
Confidence 99999999999999999875543 37889999999999999999999999999999999999999999999999999999
Q ss_pred cceeehhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHH
Q 009436 382 VNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPAL 461 (535)
Q Consensus 382 ~iaAV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~n 461 (535)
++|||+||...|+++..+++|++|.+..+|+++.||||+|||||||++||++++|++++.|++.+.+..+|++|+||+++
T Consensus 485 viAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlgaLPp~L 564 (639)
T PLN02829 485 VNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGL 564 (639)
T ss_pred eEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCccccccCCChHH
Confidence 99999999988889999999999998889999999999999999999999999999999999988888899999999999
Q ss_pred hhhccCeeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchhhccCC
Q 009436 462 LAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535 (535)
Q Consensus 462 l~F~~~i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~~cn~~ 535 (535)
++|+|++++||.+||++|+||++++....+++|+||||+|++|||++.++++|+++|.+|+++++||+++||||
T Consensus 565 l~F~g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni~ 638 (639)
T PLN02829 565 ITFWKRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNIN 638 (639)
T ss_pred HHhcCceEecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCCC
Confidence 99999999999999999999998887888999999999999999999999999999999999999999999997
No 3
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=5.6e-135 Score=1087.87 Aligned_cols=486 Identities=49% Similarity=0.846 Sum_probs=468.7
Q ss_pred CCCCchhhccchhhhhhhcccccc---ccccChhhHHHHHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhhh
Q 009436 45 RSNPLALEKSARTEQVERKVLNFT---KEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKA 121 (535)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 121 (535)
..++.+++|+...+....+++.++ ++...+|++||+|||||||||||++|||++||++|++||+++|||+||+||+|
T Consensus 163 ~~~~~~~~~sk~~d~~~~g~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a 242 (657)
T PLN02910 163 QTQAAAIERSKSLDTSVKGKYSIWRRDYESPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEA 242 (657)
T ss_pred hhhHHHhhhhhccCcccccceeeecccccccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 447888999999998888988886 66778999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHh
Q 009436 122 AMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKL 201 (535)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl 201 (535)
++|+|| |+++.++|++|+++|++||+++|||++|++||||||+++||++++|++|++|++||||+|+|||||||+|||
T Consensus 243 ~~d~dl--p~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRL 320 (657)
T PLN02910 243 TSDAEL--HSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQL 320 (657)
T ss_pred cccccc--CchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhh
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhCchhhchhcccCCCCCCcCCCceeEEEEeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcC
Q 009436 202 SVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNND 281 (535)
Q Consensus 202 ~~e~~~~~~~~~~~~~~~~~~~l~d~~~ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~ 281 (535)
|+|||+++++++++ |++++|+||+++|||+|||||+|+||||||++.|+++|+++|||||||++|+.+|++||.+||
T Consensus 321 t~Ey~~~~~~~~~~---p~~~~l~dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~ 397 (657)
T PLN02910 321 AADYFLLGFQNKDY---VNKKKLEDPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINP 397 (657)
T ss_pred HHHHHhCchhhccC---CChhhccCCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCC
Confidence 99999999998887 577899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEeecccchhccccchhhHHhhhccCccceeccccccc----c-CCCCCCCCCcchhhhHHHHhhcccccCCCe
Q 009436 282 FKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDL----R-VEPKLRNPRYLSLLNHLRFYIPEIYPQLEK 356 (535)
Q Consensus 282 ~~~a~I~v~~i~~f~wl~~~y~pvl~~l~~~~~~~~yf~~~~~~----~-~~l~~rn~~~lS~~~y~Rf~LPellP~ldK 356 (535)
+++|+|||++||+|+|++.+|+||++|++++.++.|||..+... + .++++|+|+|+|+++|+|||||++||+++|
T Consensus 398 ~~~A~V~V~nie~f~wln~~~~pvl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~K 477 (657)
T PLN02910 398 PAKATIQVENIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEK 477 (657)
T ss_pred CccceEEEeehhhcccccccccHHHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCe
Confidence 99999999999999999999999999999999999999864432 2 578999999999999999999999999999
Q ss_pred EEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHH
Q 009436 357 IVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVT 436 (535)
Q Consensus 357 VLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it 436 (535)
|||||+|+||++||++||++||+|+++|||+||...|+++..+++|++|.+.++|++++||||+|||||||++||++++|
T Consensus 478 VLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nIT 557 (657)
T PLN02910 478 ILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNIT 557 (657)
T ss_pred EEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHH
Confidence 99999999999999999999999999999999998888999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCCHHHhhhccCeeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccCccCCCHH
Q 009436 437 ARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKP 516 (535)
Q Consensus 437 ~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~ 516 (535)
+.++.|++.+.+..+|++|+||+++++|+|++++||.+||+.|+||++.+....+++|+||||+|++|||++.++++|++
T Consensus 558 e~ye~w~eln~~~~L~dqgsLPpgLLvF~g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~ 637 (657)
T PLN02910 558 GIYHYWQDLNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKP 637 (657)
T ss_pred HHHHHHHHhcccccccccCCCChHHHHHhCceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchH
Confidence 99999999998899999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhccCC
Q 009436 517 IWDRYVNHSHPYVQDCETS 535 (535)
Q Consensus 517 ~W~~Y~~~~~pfl~~cn~~ 535 (535)
+|.+|+++++||+++|||+
T Consensus 638 ~W~kYl~~d~~fl~~Cni~ 656 (657)
T PLN02910 638 YWSRYVQYDNPYLQLCNIS 656 (657)
T ss_pred HHHHHccCCChHHHhCCCC
Confidence 9999999999999999996
No 4
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=1e-123 Score=1008.64 Aligned_cols=459 Identities=34% Similarity=0.589 Sum_probs=425.6
Q ss_pred cccccc---ccccChhhHHHHHhHHHHHHHHH-HHHHhhCCchHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHH
Q 009436 63 KVLNFT---KEILSATSFSRQLAEQIILAKAY-VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIIS 138 (535)
Q Consensus 63 ~~~~~~---~~~~~~~~~~~~~~d~~~~a~~y-~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (535)
+++.++ ++...+|++||+||||||||||| ++|||++||++|+|||+++|||+||+||+|++|+|+ |+++.++|+
T Consensus 165 g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dl--p~~~~~~~~ 242 (629)
T PLN02769 165 GSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADL--PPFIQKKLE 242 (629)
T ss_pred cceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccC--ChhHHHHHH
Confidence 444443 55667999999999999999998 799999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHHhCchhhchhccc
Q 009436 139 SLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASER 218 (535)
Q Consensus 139 ~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~ 218 (535)
+|+++|++||++.|||++|++||||||++||||++++++|++|++||||+|+|||||||+||||+|||+++++++++
T Consensus 243 ~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~--- 319 (629)
T PLN02769 243 KMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDMED--- 319 (629)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhccC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCcCCCceeEEEEeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhc
Q 009436 219 RNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWL 298 (535)
Q Consensus 219 ~~~~~l~d~~~ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl 298 (535)
+++++|+||+++|||+|||||+|+|||||||+.|+++|+++|||||||++|+.+|++||.+|++++|+|+|+++|+|+|.
T Consensus 320 ~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~ 399 (629)
T PLN02769 320 SNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILK 399 (629)
T ss_pred CchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeec
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccchhhHHhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCC
Q 009436 299 NASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDL 378 (535)
Q Consensus 299 ~~~y~pvl~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL 378 (535)
+. .+|+++|+++.+...++|.... ....+.++|+|+|+++|+|||||++||+++||||||+|+||++||++||++||
T Consensus 400 ~~-~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL 476 (629)
T PLN02769 400 DL-DKFALKQLSLPEEFRVSFRSVD--NPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDM 476 (629)
T ss_pred cc-chHHHHhhccchhhhhhhccCC--CCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCC
Confidence 65 5899999988776555554332 23345678999999999999999999999999999999999999999999999
Q ss_pred CCCcceeehhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHc-C-CccccccCC
Q 009436 379 HGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQN-A-DRTLWKLGT 456 (535)
Q Consensus 379 ~g~~iaAV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n-~-d~~l~~~gd 456 (535)
+|+++|||++|...+.++..|++ ..+|+++.||||+|||||||++||++++++++++|++.+ . +...|++++
T Consensus 477 ~gkviAAVedc~~rl~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~ 550 (629)
T PLN02769 477 GGKVNGAVQFCGVRLGQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAA 550 (629)
T ss_pred CCCeEEEehhhhhhhhhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccC
Confidence 99999999999866666555544 346888999999999999999999999999999998764 3 457899999
Q ss_pred CCHHHhhhccCeeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchhhccCC
Q 009436 457 LPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535 (535)
Q Consensus 457 l~~~nl~F~~~i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~~cn~~ 535 (535)
||++|++|+|++++||.+||+.++||++++..+.+++|+||||+|++|||++.++++|+++||+|++++++|+++||||
T Consensus 551 Lp~lnlvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~fl~~Cni~ 629 (629)
T PLN02769 551 LPASLLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECNVN 629 (629)
T ss_pred cCHHHHHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCChHHhhCCCC
Confidence 9999999999999999999999999988887788999999999999999999999999999999999999999999997
No 5
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=6.1e-120 Score=975.64 Aligned_cols=443 Identities=40% Similarity=0.722 Sum_probs=423.1
Q ss_pred cccccChhhHHHHHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHh
Q 009436 68 TKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTA 147 (535)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (535)
|.....+|++||+|||||||||||++|||++||++|+|||+++|||+||+||+|+.|+++ |+++.++|++|+++|++|
T Consensus 157 ~~~~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~l--p~~~~~~~~~m~~~~~~a 234 (603)
T PLN02718 157 VQPRRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDL--SKSALQRMKSMEVTLYKA 234 (603)
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCC--CHhHHHHHHHHHHHHHHH
Confidence 445567999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHHhCchhhchhcccCCCCCCcCC
Q 009436 148 QDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDN 227 (535)
Q Consensus 148 ~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~ 227 (535)
|+++|||++|++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||+++++++++ |++++|+||
T Consensus 235 ~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~---~~~~~l~d~ 311 (603)
T PLN02718 235 SRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQL---PNQQRYNDP 311 (603)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccC---CChhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 578899999
Q ss_pred CceeEEEEeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHH
Q 009436 228 NLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK 307 (535)
Q Consensus 228 ~~ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~ 307 (535)
+.+|||+++||++|+||+|+|++.|+++|++++||||||++++++|+.||..++..+++|+|+++++|.|++.+|+++++
T Consensus 312 ~~~Hia~~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk 391 (603)
T PLN02718 312 DLYHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLM 391 (603)
T ss_pred cceeEEEEcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999998887
Q ss_pred hhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeeh
Q 009436 308 QLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVE 387 (535)
Q Consensus 308 ~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~ 387 (535)
++++ .+|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+
T Consensus 392 ~l~s--------------------~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVe 451 (603)
T PLN02718 392 KQNS--------------------HDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVE 451 (603)
T ss_pred hccc--------------------cccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEec
Confidence 6543 23689999999999999999999999999999999999999999999999999999
Q ss_pred hhhh---hhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhh
Q 009436 388 TCLE---AFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAF 464 (535)
Q Consensus 388 dc~~---~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F 464 (535)
||.. .++++..++||++|++.++|+++.||||+|||||||++||++++++++++|++.+.+..+|++|+||++|++|
T Consensus 452 dC~~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~dqdaLpp~LlvF 531 (603)
T PLN02718 452 TCLEGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKAGSLPIGWLTF 531 (603)
T ss_pred cccccccchhhhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCccccCcccccHHHHHh
Confidence 9975 3556677899999998889999999999999999999999999999999999988877899999999999999
Q ss_pred ccCeeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchhhccCC
Q 009436 465 YGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535 (535)
Q Consensus 465 ~~~i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~~cn~~ 535 (535)
+|++++||.+||+.++||++++....+++|+||||+|++|||++.+++.|+++|.+|+++++||+++||||
T Consensus 532 ~gri~~LD~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~Cn~~ 602 (603)
T PLN02718 532 YNQTVALDKRWHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNIH 602 (603)
T ss_pred cCceeecChHHhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhcCCC
Confidence 99999999999999999988777778899999999999999999999999999999999999999999996
No 6
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=5.9e-115 Score=927.34 Aligned_cols=460 Identities=45% Similarity=0.823 Sum_probs=427.4
Q ss_pred cChhhHHHHHhHHHHHHHHHHHHHhhCC--chHHHHHHHHHHHHHHHHhhhhhcc---------------CCCCCCCchH
Q 009436 72 LSATSFSRQLAEQIILAKAYVIIAKEHN--NHRLAWELSKKIRSCQLLLSKAAMR---------------GEPITLDEAE 134 (535)
Q Consensus 72 ~~~~~~~~~~~d~~~~a~~y~~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 134 (535)
++.|.+.||..|+..++.||+++|+..+ +++++|-+..--+++..+.++++.. .++ |+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 155 (559)
T PLN02523 78 TRLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQF--EKEVK 155 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhc--chhHH
Confidence 3669999999999999999999999887 5666666555556666555544332 233 99999
Q ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHHhCchhhch
Q 009436 135 PIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDL 214 (535)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~ 214 (535)
+++|.|+++|++||+ .|||+++++|||+|++++|||++++++|++|++||||+|+|||||||+||||+|||++++++++
T Consensus 156 ~~~k~~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~ 234 (559)
T PLN02523 156 ERVKVARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKD 234 (559)
T ss_pred HHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhc
Confidence 999999999999996 9999999999999999999999999999999999999999999999999999999999988665
Q ss_pred hcccCCCCCCcCCCceeEEEEeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeeccc
Q 009436 215 ASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEE 294 (535)
Q Consensus 215 ~~~~~~~~~l~d~~~ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~ 294 (535)
. +++++++|+||+++|||++||||+|++|+|+||+.|+++|++++||||||++|+.+|++||.++++++++|+|++||+
T Consensus 235 ~-~~~~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Ied 313 (559)
T PLN02523 235 E-GKPPPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVED 313 (559)
T ss_pred c-CCCcchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeeh
Confidence 4 336889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccchhhHHhhhccCccceecccccc----ccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCC
Q 009436 295 FSWLNASYAPIVKQLLNADSRAIYFGEYQD----LRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDL 370 (535)
Q Consensus 295 f~wl~~~y~pvl~~l~~~~~~~~yf~~~~~----~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DL 370 (535)
|+|++.+|+|+++|+++.+++.+||..... ...++++++|+|+|+++|+||+||++||+++||||||+|+||++||
T Consensus 314 f~~ln~~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DL 393 (559)
T PLN02523 314 YKFLNSSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDL 393 (559)
T ss_pred hhhcccccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCH
Confidence 999999999999999999999999986432 2367889999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCcceeehhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCcc
Q 009436 371 TPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRT 450 (535)
Q Consensus 371 seLw~iDL~g~~iaAV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~ 450 (535)
++||++||+|+++|||+||...++++.++++|++|.+.+.|+++.||||+|||||||++||++++|++++.|++.+.+..
T Consensus 394 seLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~ 473 (559)
T PLN02523 394 TGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRT 473 (559)
T ss_pred HHHHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhccccc
Confidence 99999999999999999998778899999999999998899999999999999999999999999999999998888889
Q ss_pred ccccCCCCHHHhhhccCeeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchh
Q 009436 451 LWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQ 530 (535)
Q Consensus 451 l~~~gdl~~~nl~F~~~i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~ 530 (535)
+|++|+||++|++|+|++++||.+||++++||+++++.+.+++|+||||+|++|||++.++++|+++|++|+++++||++
T Consensus 474 l~DqdaLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~ 553 (559)
T PLN02523 474 LWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQ 553 (559)
T ss_pred cccccccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred hccCC
Q 009436 531 DCETS 535 (535)
Q Consensus 531 ~cn~~ 535 (535)
+||||
T Consensus 554 ~Cn~~ 558 (559)
T PLN02523 554 ACNFG 558 (559)
T ss_pred hCCCC
Confidence 99996
No 7
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=3.6e-112 Score=903.59 Aligned_cols=423 Identities=38% Similarity=0.779 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009436 102 RLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTL 181 (535)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~ 181 (535)
++.+|+.+-+.| -.-++++.|+++ |+++++.++ +||+.+|||+++++|||+|++++||+++++++|++|
T Consensus 90 ~~~~~~~~~l~~--~~~~~~~~d~~l--p~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~ 158 (533)
T PLN02870 90 RLVRDFYKILNE--VNTEEIPDGLKL--PDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELM 158 (533)
T ss_pred hhHHHHHHHHHH--hccccccccccC--ChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555 234688899999 888777776 677889999999999999999999999999999999
Q ss_pred hHhhhccccCcccchhhhHhhHHHHhCchhhchhcccCCCCCCcCCCceeEEEEeCCCcchHHHHHHHHHhCCCCCcEEE
Q 009436 182 FGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVF 261 (535)
Q Consensus 182 ~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~~~ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~F 261 (535)
++||||+|+|||||||+||||+|||+++++++++|++++.++|+||+++|||++||||+|+||||||++.|+++|+++||
T Consensus 159 ~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VF 238 (533)
T PLN02870 159 NKHFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVF 238 (533)
T ss_pred HHHHHHhhcCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEE
Confidence 99999999999999999999999999999999998777788999999999999999999999999999999999999999
Q ss_pred EEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhhhccCccc-eeccccccc-----------cCCC
Q 009436 262 HIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRA-IYFGEYQDL-----------RVEP 329 (535)
Q Consensus 262 hIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l~~~~~~~-~yf~~~~~~-----------~~~l 329 (535)
|||||++|+.+|++||.+|++++|+|||++||+|+|++.+|+||++|++++.+.. |||....+. ..++
T Consensus 239 HvvTD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (533)
T PLN02870 239 HVITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKL 318 (533)
T ss_pred EEecCccccHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhccc
Confidence 9999999999999999999999999999999999999999999999999998744 555433321 1367
Q ss_pred CCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhh-----hHhhhhhccCCC
Q 009436 330 KLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEA-----FHRYYKYLNFSN 404 (535)
Q Consensus 330 ~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~-----f~r~~~~ln~s~ 404 (535)
++++|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||... ++++..|+||++
T Consensus 319 ~~~~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~ 398 (533)
T PLN02870 319 QARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSH 398 (533)
T ss_pred ccCCccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhccccc
Confidence 889999999999999999999999999999999999999999999999999999999999642 457778999999
Q ss_pred cccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcC--CccccccCCCCHHHhhhccCeeeccccccccccCC
Q 009436 405 PIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNA--DRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGY 482 (535)
Q Consensus 405 p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~--d~~l~~~gdl~~~nl~F~~~i~~Ld~~WN~~~~gy 482 (535)
|.+..+|+++.||||||||||||++||++++++++++|++.+. +..+|++|++|++|++|+|++++||.+||+.++||
T Consensus 399 p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy 478 (533)
T PLN02870 399 PLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGY 478 (533)
T ss_pred chhhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCC
Confidence 9999999999999999999999999999999999999998764 34789999999999999999999999999999999
Q ss_pred CCcccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchhhccCC
Q 009436 483 DMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535 (535)
Q Consensus 483 ~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~~cn~~ 535 (535)
+.+...+.+++|+||||+|++|||++.++++|+++|.+|++++++|+++|||+
T Consensus 479 ~~~~~~~~i~~aaIIHY~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 479 QSKTNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred cccccccccCCcEEEEECCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 87766678899999999999999999999999999999999999999999995
No 8
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=4.5e-111 Score=898.49 Aligned_cols=423 Identities=37% Similarity=0.670 Sum_probs=392.3
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhcc
Q 009436 109 KKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAE 188 (535)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~ 188 (535)
+-.+|++|+|++++.|.++ |+.+++++++|+++++++|+.+|||+++++|||||++++||+++++++|++|++||||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~ 170 (535)
T PLN02867 93 KLREELTRALVEAKEQDDG--GRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASH 170 (535)
T ss_pred HHHHHHHHHHHHhhhcccc--CcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccchhhhHhhHHHHhCchhhchhcccCCCCCCcCCCceeEEEEeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCC
Q 009436 189 SLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGV 268 (535)
Q Consensus 189 ~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~~~ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l 268 (535)
|+|||||||+||||+|||+++++++++|++++.++|+||+++|||++||||+|+||||||++.|+++|+++|||||||++
T Consensus 171 t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ 250 (535)
T PLN02867 171 GIPKSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKK 250 (535)
T ss_pred hcCCCccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCcc
Confidence 99999999999999999999999999988778889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhhhccCcc-ce----------eccccccccCCCCCCCCCcc
Q 009436 269 TYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSR-AI----------YFGEYQDLRVEPKLRNPRYL 337 (535)
Q Consensus 269 ~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l~~~~~~-~~----------yf~~~~~~~~~l~~rn~~~l 337 (535)
|+.+|++||.+||+++|+|||+++|+|+|++.+|+||+++++++++. .+ ||+.. ...++++++|+|+
T Consensus 251 ny~aM~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pkyl 328 (535)
T PLN02867 251 TYTPMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGT--HKRSLEALSPSCL 328 (535)
T ss_pred ccHHHHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccc--cccchhhcChhhh
Confidence 99999999999999999999999999999999999999999987643 22 33222 2256788999999
Q ss_pred hhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhh--hhh---hHhhhhhccCCCcccccCCC
Q 009436 338 SLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETC--LEA---FHRYYKYLNFSNPIISSKFD 412 (535)
Q Consensus 338 S~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc--~~~---f~r~~~~ln~s~p~i~~~f~ 412 (535)
|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||.|+ ... .+++.+|+||++|.+..+++
T Consensus 329 S~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~ 408 (535)
T PLN02867 329 SLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLD 408 (535)
T ss_pred hHHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCC
Confidence 9999999999999999999999999999999999999999999999999774 221 24577899999999888999
Q ss_pred CCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCC--ccccccCCCCHHHhhhccCeeeccccccccccCCCCcc-ccc
Q 009436 413 PQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNAD--RTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNI-DNR 489 (535)
Q Consensus 413 ~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d--~~l~~~gdl~~~nl~F~~~i~~Ld~~WN~~~~gy~~~i-~~~ 489 (535)
++.||||||||||||++||++++++++++|++.+.+ ..+|++|.||+++++|+|++++||.+||+.++||+... ..+
T Consensus 409 p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~ 488 (535)
T PLN02867 409 QERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPRE 488 (535)
T ss_pred CCCcceecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhh
Confidence 999999999999999999999999999999998754 46899999999999999999999999999999987542 234
Q ss_pred ccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchhhccCC
Q 009436 490 LIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535 (535)
Q Consensus 490 ~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~~cn~~ 535 (535)
.+++|+||||+|++|||++.++++|+++|.+|++++++|+|+|||+
T Consensus 489 ~i~~paIIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 489 ILESAAVLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred hcCCcEEEEECCCCCcccccCCCchhHHHHHhcCccchHHHhcccC
Confidence 5789999999999999999999999999999999999999999995
No 9
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=1.1e-110 Score=892.24 Aligned_cols=401 Identities=39% Similarity=0.781 Sum_probs=375.9
Q ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHHhCchhhch
Q 009436 135 PIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDL 214 (535)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~ 214 (535)
+..+++++++.++|..+|||++|++|||||++++||+++++|+|+.+++||||+|+|||||||+||||+|||++++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~ 192 (534)
T PLN02659 113 DIPQTLEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQ 192 (534)
T ss_pred ccchHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCchhhhc
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCcCCCceeEEEEeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeeccc
Q 009436 215 ASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEE 294 (535)
Q Consensus 215 ~~~~~~~~~l~d~~~ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~ 294 (535)
+|++++.++|+||+++|||++||||+|+||||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||++||+
T Consensus 193 ~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~~~~a~v~V~~~e~ 272 (534)
T PLN02659 193 LPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHPLSPAIIEVKALHH 272 (534)
T ss_pred cCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEEeehh
Confidence 98877888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccchhhHHhhhccCccceecccccc----------c--cCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEec
Q 009436 295 FSWLNASYAPIVKQLLNADSRAIYFGEYQD----------L--RVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDD 362 (535)
Q Consensus 295 f~wl~~~y~pvl~~l~~~~~~~~yf~~~~~----------~--~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~ 362 (535)
|+|++.+|+||++|++++.+..+||..+.+ . ..++++|+|+|+|+++|+||+||++||+++||||||+
T Consensus 273 f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPeLLP~LdKVLYLD~ 352 (534)
T PLN02659 273 FDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDD 352 (534)
T ss_pred cccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHHHhhhcCeEEEeeC
Confidence 999999999999999998888888864331 0 1356789999999999999999999999999999999
Q ss_pred CeeeccCChhhhcCCCCCCcceeehhhhhh--h---HhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHH
Q 009436 363 DVVVQKDLTPLFSLDLHGNVNGAVETCLEA--F---HRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTA 437 (535)
Q Consensus 363 DvVV~~DLseLw~iDL~g~~iaAV~dc~~~--f---~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~ 437 (535)
|+||++||++||++||+|+++|||+||... + +++..+++|++|.+..+|+++.||||+|||||||++||++++++
T Consensus 353 DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITe 432 (534)
T PLN02659 353 DIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISS 432 (534)
T ss_pred CEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeEeeHHHHHhcChHH
Confidence 999999999999999999999999999632 3 56778899999999889999999999999999999999999999
Q ss_pred HHHHHHHHcC--CccccccCCCCHHHhhhccCeeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccCccCCCH
Q 009436 438 RYHYWQEQNA--DRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYK 515 (535)
Q Consensus 438 ~~~~~~~~n~--d~~l~~~gdl~~~nl~F~~~i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~ 515 (535)
++++|++++. +..+|++|+||++|++|+|++++||.+||+.++||+.+...+.+++|+||||+|++|||++.++++|+
T Consensus 433 k~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~~KPW~~~~~~~yr 512 (534)
T PLN02659 433 TYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGRAKPWLDIAFPQLR 512 (534)
T ss_pred HHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCcccccccccccCCcEEEEECCCCCccccccCCcch
Confidence 9999998774 45788999999999999999999999999999999877666678999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhccCC
Q 009436 516 PIWDRYVNHSHPYVQDCETS 535 (535)
Q Consensus 516 ~~W~~Y~~~~~pfl~~cn~~ 535 (535)
++|.+|+++++||+|+|||+
T Consensus 513 ~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 513 PLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred hHHHHHhccCCHHHHhcCCC
Confidence 99999999999999999996
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=4.4e-56 Score=446.99 Aligned_cols=255 Identities=52% Similarity=0.938 Sum_probs=231.1
Q ss_pred eeEEEEeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhh
Q 009436 230 YHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQL 309 (535)
Q Consensus 230 ihiv~~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l 309 (535)
+|||+++||.++++|++.|++.|+++|.+++|||+||+++.+.|++||..++..+++|++..++++.+.+..+.+.++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999989999999999999999999999999999999999999999998899999999999888777777788888
Q ss_pred hccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhh
Q 009436 310 LNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETC 389 (535)
Q Consensus 310 ~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc 389 (535)
++.. ....++.++++++|.++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+|
T Consensus 81 ~~~~-----------~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d- 148 (257)
T cd06429 81 ESEA-----------DTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET- 148 (257)
T ss_pred hccc-----------cccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-
Confidence 6643 1134566678999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCc--cccccCCCCHHHhhhccC
Q 009436 390 LEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADR--TLWKLGTLPPALLAFYGL 467 (535)
Q Consensus 390 ~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~--~l~~~gdl~~~nl~F~~~ 467 (535)
||||||||||+++||++++++++.+|++.+.+. .++++|+||++|++|+|+
T Consensus 149 ---------------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~ 201 (257)
T cd06429 149 ---------------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGL 201 (257)
T ss_pred ---------------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCe
Confidence 579999999999999999999999999876543 568889999999999999
Q ss_pred eeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHh
Q 009436 468 TEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVN 523 (535)
Q Consensus 468 i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~ 523 (535)
+..||.+||+.+.||+.......+++|+||||+|+.|||+..+.++|+++||+|++
T Consensus 202 ~~~L~~~wN~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 202 TSPLDPSWHVRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred eEECChHHcccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 99999999999888875544456779999999999999999988999999999974
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.1e-43 Score=366.32 Aligned_cols=263 Identities=18% Similarity=0.256 Sum_probs=198.2
Q ss_pred CCceeEEEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchh
Q 009436 227 NNLYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAP 304 (535)
Q Consensus 227 ~~~ihiv~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~p 304 (535)
++.+|||+++|+ +.+++|+|.|++.|+++ ..++|||++++++.+.++.+-......+..|++..++. ++
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~-~~------- 93 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINC-ER------- 93 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCH-HH-------
Confidence 468999999996 78999999999999766 46999999999999888765444333355666655432 10
Q ss_pred hHHhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCCCcc
Q 009436 305 IVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHGNVN 383 (535)
Q Consensus 305 vl~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g~~i 383 (535)
++ .++ ...++|..+|+||+||++||+ ++||||||+|+||++||++||++|++|+.+
T Consensus 94 -~~--------------------~~~--~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~ 150 (334)
T PRK15171 94 -LK--------------------SLP--STKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEI 150 (334)
T ss_pred -Hh--------------------CCc--ccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeE
Confidence 00 011 125789999999999999995 999999999999999999999999997666
Q ss_pred eee-hhhhhh-hHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHH
Q 009436 384 GAV-ETCLEA-FHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPAL 461 (535)
Q Consensus 384 aAV-~dc~~~-f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~n 461 (535)
||| .++... +......++. | ++ ...|||||||||||++||++++++++.+++..+.-...+..+||+++|
T Consensus 151 aav~~d~~~~~~~~~~~~l~~--~----~~--~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN 222 (334)
T PRK15171 151 AAVVAEGDAEWWSKRAQSLQT--P----GL--ASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLN 222 (334)
T ss_pred EEEEeccchhHHHHHHHhcCC--c----cc--cccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHH
Confidence 666 444321 1122222221 0 11 246999999999999999999999999998754211223347999999
Q ss_pred hhhccCeeecccccccccc-CCCC--cccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchh
Q 009436 462 LAFYGLTEPLDRRWHVLGL-GYDM--NIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQ 530 (535)
Q Consensus 462 l~F~~~i~~Ld~~WN~~~~-gy~~--~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~ 530 (535)
++|.|++..||.+||++.. .+.. .......++|+||||+|+.|||...+.++++++||+|.+.+ ||..
T Consensus 223 ~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~~s-pw~~ 293 (334)
T PRK15171 223 ILLAGKVKFIDAKYNTQFSLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKEAS-PWKN 293 (334)
T ss_pred HHHcCCeEECCHhhCCccchhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHhcC-CCCC
Confidence 9999999999999998742 1110 01112246899999999999999888889999999999998 8864
No 12
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=1.8e-40 Score=337.91 Aligned_cols=262 Identities=17% Similarity=0.227 Sum_probs=191.1
Q ss_pred eEEEEeCC-CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhh
Q 009436 231 HFCIFSDN-VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQL 309 (535)
Q Consensus 231 hiv~~sDn-vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l 309 (535)
-||++.+| +.+++|+|+|++.|+.. .++|||++|+++.+.++.+.......++.|.+..++++. . .
T Consensus 4 ~iv~~~~~y~~~~~~~i~Sil~n~~~--~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~--~--------~- 70 (280)
T cd06431 4 AIVCAGYNASRDVVTLVKSVLFYRRN--PLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK--S--------R- 70 (280)
T ss_pred EEEEccCCcHHHHHHHHHHHHHcCCC--CEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh--h--------h-
Confidence 36667777 68999999999999854 499999999999999988876655557778777664321 0 0
Q ss_pred hccCccceeccccccccCCCCCCCCCcch-hhhHHHHhhcccccC-CCeEEEEecCeeeccCChhhhcC--CCCC-Ccce
Q 009436 310 LNADSRAIYFGEYQDLRVEPKLRNPRYLS-LLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSL--DLHG-NVNG 384 (535)
Q Consensus 310 ~~~~~~~~yf~~~~~~~~~l~~rn~~~lS-~~~y~Rf~LPellP~-ldKVLYLD~DvVV~~DLseLw~i--DL~g-~~ia 384 (535)
+. . .. ..++| .++|+||+||++||+ ++||||||+|+||++||++||++ |+.| +++|
T Consensus 71 ---------~~-------~--~~-~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a 131 (280)
T cd06431 71 ---------VS-------W--IP-NKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLG 131 (280)
T ss_pred ---------hc-------c--Cc-ccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEE
Confidence 00 0 01 12444 448899999999995 99999999999999999999998 7766 5677
Q ss_pred eehhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCC-ccccccCCCCHHHhh
Q 009436 385 AVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNAD-RTLWKLGTLPPALLA 463 (535)
Q Consensus 385 AV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d-~~l~~~gdl~~~nl~ 463 (535)
||++....+.... .....| +.....|||||||||||++||++++++++..+.+++.. ......+||+++|.+
T Consensus 132 ~v~~~~~~~~~~~--~~~~~~-----~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v 204 (280)
T cd06431 132 LVENQSDWYLGNL--WKNHRP-----WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAV 204 (280)
T ss_pred Eeccchhhhhhhh--hhccCC-----CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHH
Confidence 7776432111000 000011 11123599999999999999999999998765554311 122345899999999
Q ss_pred hccC---eeeccccccccccCCC-CcccccccCCCeEEeccCCCCCcccCcc-CCCHHHHHHHHhcCCCchhh
Q 009436 464 FYGL---TEPLDRRWHVLGLGYD-MNIDNRLIESAAVIHFNGNMKPWLKLAI-SRYKPIWDRYVNHSHPYVQD 531 (535)
Q Consensus 464 F~~~---i~~Ld~~WN~~~~gy~-~~i~~~~i~~a~IIHy~G~~KPW~~~~~-~~y~~~W~~Y~~~~~pfl~~ 531 (535)
|.++ ++.||.+||++..... ........++|+||||+|+.|||...+. ++|+++|.+|.+++++-++.
T Consensus 205 ~~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (280)
T cd06431 205 IKQNPFLVYQLPCAWNVQLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRR 277 (280)
T ss_pred HcCCcceeEECCCccccccCccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhh
Confidence 9999 8999999999853211 1100112468999999999999998765 89999999999999887764
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=8e-39 Score=318.77 Aligned_cols=237 Identities=19% Similarity=0.238 Sum_probs=178.8
Q ss_pred eeEEEEeCC---CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhH
Q 009436 230 YHFCIFSDN---VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 306 (535)
Q Consensus 230 ihiv~~sDn---vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl 306 (535)
|||++++++ +.+++|+++|+++|+++ .++|||++++++.+..+.+-......+.++++..++.-++..
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~------- 71 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD------- 71 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch-------
Confidence 577775543 67999999999999887 599999999999988877654433345666666543211000
Q ss_pred HhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceee
Q 009436 307 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV 386 (535)
Q Consensus 307 ~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV 386 (535)
... ..+++|..+|+||+||++||+++||||||+|+||++||++||++|++|+++|||
T Consensus 72 ----------------------~~~-~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav 128 (246)
T cd00505 72 ----------------------SEH-LKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAA 128 (246)
T ss_pred ----------------------hhh-hcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEc
Confidence 000 025778899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhcc
Q 009436 387 ETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYG 466 (535)
Q Consensus 387 ~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~ 466 (535)
+||..... ..+... ..+...+.+||||||||+||++||++++.+.+..+...+.+. ...+||+++|.+|++
T Consensus 129 ~d~~~~~~--~~~~~~-----~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~~~~ 199 (246)
T cd00505 129 PDPGDRRE--GKYYRQ-----KRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSS--LSGGDQDLLNTFFKQ 199 (246)
T ss_pred cCchhhhc--cchhhc-----ccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhccc--CccCCcHHHHHHHhc
Confidence 99864211 111000 012334578999999999999999888888777655433332 334789999999999
Q ss_pred C---eeeccccccccccCCCCcc--cccccCCCeEEeccCCCCCcc
Q 009436 467 L---TEPLDRRWHVLGLGYDMNI--DNRLIESAAVIHFNGNMKPWL 507 (535)
Q Consensus 467 ~---i~~Ld~~WN~~~~gy~~~i--~~~~i~~a~IIHy~G~~KPW~ 507 (535)
+ +.+||.+||++..++.... ..+..++|+||||+|+.|||.
T Consensus 200 ~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 200 VPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred CCCeEEECCCeeeEEecCccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 8 9999999999977654321 123567999999999999996
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=1.2e-38 Score=316.85 Aligned_cols=238 Identities=21% Similarity=0.264 Sum_probs=186.4
Q ss_pred eeEEEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHH
Q 009436 230 YHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK 307 (535)
Q Consensus 230 ihiv~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~ 307 (535)
+|||+++|+ ..+++|+++|+++|+++ +.++|||++++++.+..+.+-......+..|++..++. +...
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~---------~~~~ 70 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDN---------DDFK 70 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCH---------HHHh
Confidence 699999997 67999999999999986 46999999999998877665443332456677666542 1110
Q ss_pred hhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeeh
Q 009436 308 QLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVE 387 (535)
Q Consensus 308 ~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~ 387 (535)
. ... ..++++..+|+||++|+++|+++||||||+|+||++||++||++|++|+.+|||.
T Consensus 71 ~--------------------~~~-~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~ 129 (248)
T cd04194 71 F--------------------FPA-TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVR 129 (248)
T ss_pred c--------------------CCc-ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEe
Confidence 0 000 1357788999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhccC
Q 009436 388 TCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGL 467 (535)
Q Consensus 388 dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~ 467 (535)
||......... ...+.....+||||||||+|+++||+.++++++.++++.+... +..+||+++|.+|.++
T Consensus 130 d~~~~~~~~~~--------~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~~~~~ 199 (248)
T cd04194 130 DPFIEQEKKRK--------RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGR--LIYPDQDILNAVLKDK 199 (248)
T ss_pred cccHHHHHHHH--------hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCc--eeeCChHHHHHHHhCC
Confidence 98754322111 0112345678999999999999999999999999999876542 3347899999999999
Q ss_pred eeeccccccccccCCCCcc--------cccccCCCeEEeccCCCCCccc
Q 009436 468 TEPLDRRWHVLGLGYDMNI--------DNRLIESAAVIHFNGNMKPWLK 508 (535)
Q Consensus 468 i~~Ld~~WN~~~~gy~~~i--------~~~~i~~a~IIHy~G~~KPW~~ 508 (535)
+..||.+||++..++.... .....++++||||+|+.|||..
T Consensus 200 ~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~ 248 (248)
T cd04194 200 ILYLPPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWNK 248 (248)
T ss_pred eEEcCcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCCCCCC
Confidence 9999999999976543221 1235689999999999999963
No 15
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-36 Score=313.90 Aligned_cols=259 Identities=19% Similarity=0.277 Sum_probs=197.7
Q ss_pred ceeEEEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCe--eEEeecccchhccccchh
Q 009436 229 LYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGST--IEVQNIEEFSWLNASYAP 304 (535)
Q Consensus 229 ~ihiv~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~--I~v~~i~~f~wl~~~y~p 304 (535)
.++||+++|+ +.+++|+|.|++.|++. -.+.||+++|+++.+.++.+-....+-+.. +.+.+++.++
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~-------- 72 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFL-------- 72 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhh--------
Confidence 5799999997 68999999999999996 359999999999999998876554333332 3333332221
Q ss_pred hHHhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcce
Q 009436 305 IVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNG 384 (535)
Q Consensus 305 vl~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~ia 384 (535)
+ + + ..++.+|.++|+||+||++||+++|+||||+|+||+|||++||.+|++|+++|
T Consensus 73 ------~-----~------------~-~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~a 128 (325)
T COG1442 73 ------D-----Y------------P-PFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLA 128 (325)
T ss_pred ------c-----c------------c-ccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEE
Confidence 0 0 0 01367899999999999999999999999999999999999999999999999
Q ss_pred eehhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhh
Q 009436 385 AVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAF 464 (535)
Q Consensus 385 AV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F 464 (535)
||.|+......-. .. -.........||||||+++|+++||++++++++.++.+...+. ...+||+++|++|
T Consensus 129 aV~D~~~~~~~~~--~~-----~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~--~~~~DQdiLN~i~ 199 (325)
T COG1442 129 AVRDVFSHYMKEG--AL-----RLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKEND--LLYPDQDILNMIF 199 (325)
T ss_pred EEeehhhhhhhhh--hh-----HhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccc--cCCccccHHHHHH
Confidence 9999864211100 00 0001123467899999999999999999999999988654433 3347899999999
Q ss_pred ccCeeeccccccccccCCCCccc---ccccCCCeEEeccCCCCCcccCccCCC-HHHHHHHHhcCCCchh
Q 009436 465 YGLTEPLDRRWHVLGLGYDMNID---NRLIESAAVIHFNGNMKPWLKLAISRY-KPIWDRYVNHSHPYVQ 530 (535)
Q Consensus 465 ~~~i~~Ld~~WN~~~~gy~~~i~---~~~i~~a~IIHy~G~~KPW~~~~~~~y-~~~W~~Y~~~~~pfl~ 530 (535)
+|++.+||.+||.+...-..-.. .....+|.|+||+|+.|||...+.+.+ ..+|...+..+ ||..
T Consensus 200 ~~~~~~L~~~YN~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~w~~i~~~~-p~~~ 268 (325)
T COG1442 200 EDRVLELPIRYNAIPYIDSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPRSHEWHEILAET-PWKN 268 (325)
T ss_pred HhhhhccCcccceeehhhhccchhhhccCCCCceEEEecCCCCCCcCccccccHHHHHHHHHhcC-Cccc
Confidence 99999999999999642110001 234568899999999999999987655 58888888776 7754
No 16
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=100.00 E-value=1.8e-35 Score=288.98 Aligned_cols=245 Identities=24% Similarity=0.387 Sum_probs=168.5
Q ss_pred eEEEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHh
Q 009436 231 HFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQ 308 (535)
Q Consensus 231 hiv~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~ 308 (535)
|||+++|. +.+++|+++|++.|++++..++|||++++++.+..+.+............+...+. . .+..
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--------~~~~ 71 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDI-S--------MLEE 71 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSG-G--------HHH-
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchH-H--------hhhh
Confidence 79999996 67999999999999998778999999999999888776444322111111111100 0 0000
Q ss_pred hhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehh
Q 009436 309 LLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVET 388 (535)
Q Consensus 309 l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~d 388 (535)
. . .......+++..+|+||++|++||+++||||||+||||.+||++||+++++|+.+||+++
T Consensus 72 ~--------~----------~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~ 133 (250)
T PF01501_consen 72 F--------Q----------FNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVED 133 (250)
T ss_dssp ---------T----------TS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE-
T ss_pred h--------h----------hcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhcccccc
Confidence 0 0 000124678899999999999999999999999999999999999999999999999998
Q ss_pred hhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhccCe
Q 009436 389 CLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLT 468 (535)
Q Consensus 389 c~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~i 468 (535)
+... .. .+...+..........+||||||||+|+++||++++.+++..+++.+.. ....+||+.+|++|++++
T Consensus 134 ~~~~--~~---~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~DQ~~ln~~~~~~~ 206 (250)
T PF01501_consen 134 ESFD--NF---PNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGM--KLGFPDQDILNIVFYGNI 206 (250)
T ss_dssp ---H--HH---HTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTT--T-SSCHHHHHHHHHTTGE
T ss_pred chhh--hh---hhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhccc--ccCcCchHHHhhhcccee
Confidence 3211 11 0111111111233468999999999999999999999999999876554 344578999999999999
Q ss_pred eeccccccccccCCCCc--ccccccCCCeEEeccCCCCCcccC
Q 009436 469 EPLDRRWHVLGLGYDMN--IDNRLIESAAVIHFNGNMKPWLKL 509 (535)
Q Consensus 469 ~~Ld~~WN~~~~gy~~~--i~~~~i~~a~IIHy~G~~KPW~~~ 509 (535)
.+||.+||+...++... ......++++||||+|..|||...
T Consensus 207 ~~L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 207 KPLPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp EEEEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred EEECchhccccccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 99999999998765111 112346899999999999999864
No 17
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.97 E-value=2e-31 Score=267.19 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=162.8
Q ss_pred eEEE-EeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHH
Q 009436 231 HFCI-FSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK 307 (535)
Q Consensus 231 hiv~-~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~ 307 (535)
||.. ++|+ +.+++|++.|++.|+. ..++|||++++++.+..+.+-......++.+++..++.-.|+.
T Consensus 2 ni~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~-------- 71 (248)
T cd06432 2 NIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLH-------- 71 (248)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhh--------
Confidence 4443 4444 6789999999999985 4699999999999888776544433345666666553111111
Q ss_pred hhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCCCcceee
Q 009436 308 QLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV 386 (535)
Q Consensus 308 ~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV 386 (535)
... ...+ +..+|.|++++++||+ ++||||||+|+||.+||++||++||+|+++|||
T Consensus 72 --------------------~~~--~~~~-~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav 128 (248)
T cd06432 72 --------------------KQT--EKQR-IIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYT 128 (248)
T ss_pred --------------------ccc--ccch-hHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEe
Confidence 000 0011 2457899999999996 999999999999999999999999999999999
Q ss_pred hhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHc-CCccccccCCCCHHHhhhc
Q 009436 387 ETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQN-ADRTLWKLGTLPPALLAFY 465 (535)
Q Consensus 387 ~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n-~d~~l~~~gdl~~~nl~F~ 465 (535)
++|.... +......+........+ .+..|||||||||||++||++++++++.++++.. .+...+...||+++|.++.
T Consensus 129 ~d~~~~~-~~~~~~~~~~~~~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~~ 206 (248)
T cd06432 129 PFCDSRK-EMDGFRFWKQGYWKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQH 206 (248)
T ss_pred eccccch-hcccchhhhhhhhhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHhc
Confidence 9986421 10000000000001122 2356999999999999999999999777655421 1222234468899999998
Q ss_pred cC-eeeccccccccccCCCCcccccccCCCeEEeccCC
Q 009436 466 GL-TEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGN 502 (535)
Q Consensus 466 ~~-i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~ 502 (535)
+. +++||.+||++...+. .+..+.|.+|||..+
T Consensus 207 ~~~i~~Lp~~w~~~~~~~~----~~~~~~~~~~~~~~~ 240 (248)
T cd06432 207 QVPIFSLPQEWLWCETWCS----DESKKKAKTIDLCNN 240 (248)
T ss_pred cCCeEECChHHHHHHHHhc----ccccCccceeecccC
Confidence 86 9999999999864332 344678999999975
No 18
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.97 E-value=5.7e-31 Score=269.30 Aligned_cols=250 Identities=12% Similarity=0.225 Sum_probs=167.1
Q ss_pred eeEEEEe--CCCcchHHHHHHHHHhCCCCCcEEEEEEeCC-CChHHH---HHhhhhcCCCCCeeEEeecccchhccccch
Q 009436 230 YHFCIFS--DNVPATSVVVNSTITNADHPKQMVFHIVTNG-VTYGAM---QAWFLNNDFKGSTIEVQNIEEFSWLNASYA 303 (535)
Q Consensus 230 ihiv~~s--DnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~-l~~~~m---k~wf~~n~~~~a~I~v~~i~~f~wl~~~y~ 303 (535)
+|+|+.+ |++..+-|+|+|++.|+.. .++|||++|+ ++.+.. +.|-.. ....+ ...++.+.
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~~--~l~Fhi~~d~~~~~~~~~~l~~~~~~---~~~~i-~~~i~~I~------- 67 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQK--PLRFHIFAEDQLKQSFKEKLDDWPEL---IDRKF-NYTLHPIT------- 67 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCCC--CEEEEEEECCccCHHHHHHHHHHHHh---cccee-eeEEEEEe-------
Confidence 3555543 3467889999999999854 5999999998 444333 333111 11111 01111110
Q ss_pred hhHHhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcC--CCCCC
Q 009436 304 PIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSL--DLHGN 381 (535)
Q Consensus 304 pvl~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~i--DL~g~ 381 (535)
|..... . .+ +..+++.+|+||++|++||++|||||||+|+||.+||++||++ |++++
T Consensus 68 ---------------~P~~~~--~--~w--s~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~ 126 (304)
T cd06430 68 ---------------FPSGNA--A--EW--KKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNST 126 (304)
T ss_pred ---------------cCccch--h--hh--hhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCC
Confidence 110000 0 01 1345668999999999999999999999999999999999999 99986
Q ss_pred -cceeehhhhhh-hHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHH-----------HhHHHHHHHHHHHcCC
Q 009436 382 -VNGAVETCLEA-FHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRK-----------ANVTARYHYWQEQNAD 448 (535)
Q Consensus 382 -~iaAV~dc~~~-f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~-----------~~it~~~~~~~~~n~d 448 (535)
++|++++-... ...+. .+ ...++ .+..|||||||++||++||+ .++++++..+++++..
T Consensus 127 ~~aA~v~e~~~~~~~~~~---~~----~~~~~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (304)
T cd06430 127 QLAAMAPEHEEPNIGWYN---RF----ARHPY-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKL 198 (304)
T ss_pred eEEEEEecccccchhhhh---hh----cccCc-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhccc
Confidence 45555542210 00111 00 01112 12357999999999999999 7789999998887664
Q ss_pred ccccccCCCCHHHhhhccC---eeeccccccccccCCCCccc--ccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHh
Q 009436 449 RTLWKLGTLPPALLAFYGL---TEPLDRRWHVLGLGYDMNID--NRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVN 523 (535)
Q Consensus 449 ~~l~~~gdl~~~nl~F~~~---i~~Ld~~WN~~~~gy~~~i~--~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~ 523 (535)
...| ||||++|++|.++ ++.||.+||++...+.++.. ....+.++|||++++.| .....+.++.++....+
T Consensus 199 ~l~~--~DQDiLN~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~--~~~~~~~f~~~~~~~~~ 274 (304)
T cd06430 199 KITW--GDQDLINIIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY--HSDKQPAFRAVYEAIRE 274 (304)
T ss_pred CCCC--CCHHHHHHHHcCCCCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC--CCccchHHHHHHHHHHh
Confidence 4444 8999999999998 99999999987643322222 23456899999998766 34444567888887777
Q ss_pred cC
Q 009436 524 HS 525 (535)
Q Consensus 524 ~~ 525 (535)
++
T Consensus 275 ~~ 276 (304)
T cd06430 275 YT 276 (304)
T ss_pred cc
Confidence 66
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.92 E-value=8.1e-25 Score=218.02 Aligned_cols=213 Identities=17% Similarity=0.133 Sum_probs=149.1
Q ss_pred CcchHHHHHHHHHhCCCCCcEEEEEE-eCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhhhccCccce
Q 009436 239 VPATSVVVNSTITNADHPKQMVFHIV-TNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAI 317 (535)
Q Consensus 239 vlaasVvI~Siv~Ns~~p~~l~FhIv-tD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l~~~~~~~~ 317 (535)
+.++.|++.|+.+|+++ +.++|+ +++++.+.++.+-... +++..++.++. +..
T Consensus 13 ~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~------~~~----------- 66 (240)
T cd02537 13 LPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEEVG------WIVREVEPIDP------PDS----------- 66 (240)
T ss_pred HHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCC------cch-----------
Confidence 67999999999999775 455555 4579988776653321 23333332110 000
Q ss_pred eccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhh
Q 009436 318 YFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYY 397 (535)
Q Consensus 318 yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~ 397 (535)
.. ......+..+|.||+++++. .++||||||+|+||.+||++||++ ++.+||+.++..
T Consensus 67 ---------~~---~~~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~~------ 124 (240)
T cd02537 67 ---------AN---LLKRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCGW------ 124 (240)
T ss_pred ---------hh---hccchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccCc------
Confidence 00 00124566789999999975 689999999999999999999987 677888876420
Q ss_pred hhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhccC--eeeccccc
Q 009436 398 KYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGL--TEPLDRRW 475 (535)
Q Consensus 398 ~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~--i~~Ld~~W 475 (535)
..|||||||++|++. ++.+.+.+++..+.. +..+||+++|.+|.++ +..||.+|
T Consensus 125 -----------------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~---~~~~DQdiLN~~~~~~~~~~~l~~~y 180 (240)
T cd02537 125 -----------------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPS---FDGGDQGLLNSYFSDRGIWKRLPFTY 180 (240)
T ss_pred -----------------cccccceEEEEcCCH----HHHHHHHHHHhccCC---CCCCCHHHHHHHHcCCCCEeECCcce
Confidence 358999999999965 445555565554432 4558999999999999 99999999
Q ss_pred cccccCCCCccc-ccccCCCeEEeccCCCCCcccCccC---------CCHHHHHHHHh
Q 009436 476 HVLGLGYDMNID-NRLIESAAVIHFNGNMKPWLKLAIS---------RYKPIWDRYVN 523 (535)
Q Consensus 476 N~~~~gy~~~i~-~~~i~~a~IIHy~G~~KPW~~~~~~---------~y~~~W~~Y~~ 523 (535)
|+....+..... ....++|+||||.|+.|||...+.. .....||+.+.
T Consensus 181 N~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~w~~~~~ 238 (240)
T cd02537 181 NALKPLRYLHPEALWFGDEIKVVHFIGGDKPWSWWRDPETKEKDDYNELHQWWWDIYD 238 (240)
T ss_pred eeehhhhccCchhhcccCCcEEEEEeCCCCCCCCCcCCCcccccchHHHHHHHHHHHh
Confidence 998653321111 1335689999999999999876543 24667777653
No 20
>PLN00176 galactinol synthase
Probab=99.91 E-value=1.2e-23 Score=218.27 Aligned_cols=239 Identities=18% Similarity=0.258 Sum_probs=149.9
Q ss_pred CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhhhccCcccee
Q 009436 239 VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIY 318 (535)
Q Consensus 239 vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l~~~~~~~~y 318 (535)
+.++.|+.+|+..+... .++ +.++|++++.+..+.+-. .++ .|..|+.+. .| ++
T Consensus 36 ~~Ga~vL~~SLr~~~s~-~~l-VvlVt~dVp~e~r~~L~~----~g~--~V~~V~~i~------~~-----~~------- 89 (333)
T PLN00176 36 VKGVVGLAKGLRKVKSA-YPL-VVAVLPDVPEEHRRILVS----QGC--IVREIEPVY------PP-----EN------- 89 (333)
T ss_pred HHHHHHHHHHHHHhCCC-CCE-EEEECCCCCHHHHHHHHH----cCC--EEEEecccC------Cc-----cc-------
Confidence 78999999999876432 223 334468898776554321 223 233333210 00 00
Q ss_pred ccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhH--hh
Q 009436 319 FGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFH--RY 396 (535)
Q Consensus 319 f~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~--r~ 396 (535)
+ .. +..+.+ ..+|.||.++++. +++||||||+|+||.++|++||+++ +..+|||.||.+... .+
T Consensus 90 ----~---~~--~~~~~~--~i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~dc~~~~~~~~~ 155 (333)
T PLN00176 90 ----Q---TQ--FAMAYY--VINYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVMDCFCEKTWSHT 155 (333)
T ss_pred ----c---cc--cccchh--hhhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEeccccccccccc
Confidence 0 00 111111 2467899999976 6899999999999999999999874 346899999875311 00
Q ss_pred hhh-ccCCC--c-cc--ccCCC-CCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhccCee
Q 009436 397 YKY-LNFSN--P-II--SSKFD-PQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTE 469 (535)
Q Consensus 397 ~~~-ln~s~--p-~i--~~~f~-~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~i~ 469 (535)
..+ ++.+. | .+ ....+ +...||||||||||++.|+.+++.+. ++.+.+ . ..+||+.+|..|.++|.
T Consensus 156 p~~~~~~c~~~~~~~~wp~~~g~~~~~yFNSGVlvinps~~~~~~ll~~----l~~~~~-~--~f~DQD~LN~~F~~~~~ 228 (333)
T PLN00176 156 PQYKIGYCQQCPDKVTWPAELGPPPPLYFNAGMFVFEPSLSTYEDLLET----LKITPP-T--PFAEQDFLNMFFRDIYK 228 (333)
T ss_pred ccccccccccchhhccchhhccCCCCCeEEeEEEEEEcCHHHHHHHHHH----HHhcCC-C--CCCCHHHHHHHHcCcEE
Confidence 000 01000 0 00 00111 24679999999999999998877653 343332 2 34899999999999999
Q ss_pred ecccccccccc-CCCCcccccccCCCeEEeccC-CCCCcccCccCC---------CHHHHHHHHhcC
Q 009436 470 PLDRRWHVLGL-GYDMNIDNRLIESAAVIHFNG-NMKPWLKLAISR---------YKPIWDRYVNHS 525 (535)
Q Consensus 470 ~Ld~~WN~~~~-gy~~~i~~~~i~~a~IIHy~G-~~KPW~~~~~~~---------y~~~W~~Y~~~~ 525 (535)
+||..||++.. .+... .....++++||||+| ..|||...+.+. ..+.||..++.+
T Consensus 229 ~Lp~~YN~~~~~~~~~~-~~~~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~ 294 (333)
T PLN00176 229 PIPPVYNLVLAMLWRHP-ENVELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDE 294 (333)
T ss_pred ECCchhcCchhhhhhCh-hhcccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhccc
Confidence 99999999742 12111 112256899999997 589998654221 356788887654
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.71 E-value=1.5e-17 Score=169.17 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=108.3
Q ss_pred cchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhhccCCCcccccCCCCCC
Q 009436 336 YLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQA 415 (535)
Q Consensus 336 ~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~ 415 (535)
.++. +|.||.++++ ++++||||||+|+||.++|++||+++. ...+||+.. .
T Consensus 76 ~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~-~~~~Aap~~--------------------------~ 126 (278)
T cd06914 76 YWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPN-YIKFAAPRA--------------------------Y 126 (278)
T ss_pred cHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCc-ccceeeecC--------------------------c
Confidence 4444 4999999999 689999999999999999999999873 333555431 1
Q ss_pred CceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhccC-------eeecccc-ccccccCCCCc--
Q 009436 416 CGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGL-------TEPLDRR-WHVLGLGYDMN-- 485 (535)
Q Consensus 416 ~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~-------i~~Ld~~-WN~~~~gy~~~-- 485 (535)
.||||||||||++.|+.+++++++......+. ..+||+++|..|.|. +..||.+ ||++...+...
T Consensus 127 ~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~-----~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~ 201 (278)
T cd06914 127 WKFASHLMVIKPSKEAFKELMTEILPAYLNKK-----NEYDMDLINEEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLH 201 (278)
T ss_pred ceecceeEEEeCCHHHHHHHHHHHHHhcccCC-----CCCChHHHHHHHhCCccccCcceEEcCccccccCChhhcccCH
Confidence 18999999999999999999999876544221 346899999999999 9999986 99885422211
Q ss_pred -------------cc-ccccCCCeEEeccCC--CCCcccCc
Q 009436 486 -------------ID-NRLIESAAVIHFNGN--MKPWLKLA 510 (535)
Q Consensus 486 -------------i~-~~~i~~a~IIHy~G~--~KPW~~~~ 510 (535)
.+ .+..+++++|||++. .|||....
T Consensus 202 ~~~l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~ 242 (278)
T cd06914 202 KSFLSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNN 242 (278)
T ss_pred HHhhccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcC
Confidence 01 122468999999986 79998763
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=5.5e-12 Score=145.03 Aligned_cols=255 Identities=18% Similarity=0.246 Sum_probs=173.6
Q ss_pred CCCceeEEEEeC-C--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccc
Q 009436 226 DNNLYHFCIFSD-N--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASY 302 (535)
Q Consensus 226 d~~~ihiv~~sD-n--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y 302 (535)
|.+.|+|.-..- . -+-.-+++.|+++|++.| +.|+++-.-++..-.+..=-++...+-..++.. ++|=
T Consensus 1178 ~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~---YkWP---- 1248 (1470)
T KOG1879|consen 1178 DKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQ---YKWP---- 1248 (1470)
T ss_pred ccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHhCceEEEEE---ecCc----
Confidence 344677665333 3 246789999999999998 999999887765332222112223333344332 3441
Q ss_pred hhhHHhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCCC
Q 009436 303 APIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHGN 381 (535)
Q Consensus 303 ~pvl~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g~ 381 (535)
..|+|.... .+ -+..|--+||.-|||- ++||||+|+|.||+.||.||.++|++|.
T Consensus 1249 -rWLhqQ~EK--------------QR---------iiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~Ga 1304 (1470)
T KOG1879|consen 1249 -RWLHQQTEK--------------QR---------IIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGGA 1304 (1470)
T ss_pred -hhhhhhhhh--------------hh---------hhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCCC
Confidence 123322110 01 1245667789999996 9999999999999999999999999999
Q ss_pred cceeehhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHH-HHHHcCCc-cccc-cCCCC
Q 009436 382 VNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHY-WQEQNADR-TLWK-LGTLP 458 (535)
Q Consensus 382 ~iaAV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~-~~~~n~d~-~l~~-~gdl~ 458 (535)
+.|-++.|..+ .....|-.|....+++.+ .+..|..|...|+||++.|+-.-..++.. |+....|- .+-+ +||||
T Consensus 1305 PygYtPfCdsR-~EMDGyRFWK~GYW~~hL-~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDLP 1382 (1470)
T KOG1879|consen 1305 PYGYTPFCDSR-REMDGYRFWKQGYWKKHL-RGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDLP 1382 (1470)
T ss_pred ccccCcccccc-ccccchhHHhhhHHHHHh-ccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhcccccc
Confidence 99999999632 123334445555554433 35789999999999999999988888764 66655553 3334 36887
Q ss_pred HHHhhhccCeeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccC----ccCCCHHHHHHHH
Q 009436 459 PALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKL----AISRYKPIWDRYV 522 (535)
Q Consensus 459 ~~nl~F~~~i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~----~~~~y~~~W~~Y~ 522 (535)
. |+...-.|+.||..|-++..+++ .+..+.+++|--|.+ ||... +..+....|..|.
T Consensus 1383 N-nm~hqVpIkSLPqeWLWCETWC~----d~skkkAktIDLCnN--P~TKEpKL~~A~Riv~EW~dyD 1443 (1470)
T KOG1879|consen 1383 N-NMQHQVPIKSLPQEWLWCETWCD----DESKKKAKTIDLCNN--PLTKEPKLDAARRIVSEWTDYD 1443 (1470)
T ss_pred c-cceeecccccCCcchhhhhhhcC----chhhhhchhhhhhcC--ccccchhhHHHhhhcCCCcccc
Confidence 5 56677789999999999877665 345678899998875 77654 2334556676664
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=8.4e-06 Score=83.35 Aligned_cols=162 Identities=21% Similarity=0.229 Sum_probs=86.7
Q ss_pred hhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhh---hhHhhh-------------------
Q 009436 340 LNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLE---AFHRYY------------------- 397 (535)
Q Consensus 340 ~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~---~f~r~~------------------- 397 (535)
.++.++.+.+.. ++|||+|||+|.||.+++++||+.. -+-.+|-.|... .|+|.+
T Consensus 155 ~mftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg~~r~ 231 (368)
T COG5597 155 DMFTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGKMRA 231 (368)
T ss_pred HHhHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCchhhCHHHhcCCCCccceeecHHHHhhcccHh
Confidence 346677776665 6899999999999999999999754 233444333221 122211
Q ss_pred ----hhccCCC--cc-cccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhc--c--
Q 009436 398 ----KYLNFSN--PI-ISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFY--G-- 466 (535)
Q Consensus 398 ----~~ln~s~--p~-i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~--~-- 466 (535)
.|+++.. +. +.+...+-..+||||.||+++.+.--..+..... =+...|..+. .|..+|++++ |
T Consensus 232 ~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~al--Pklydda~mm---eqsllnlaYn~~g~F 306 (368)
T COG5597 232 ALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFAL--PKLYDDADMM---EQSLLNLAYNYEGFF 306 (368)
T ss_pred hhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHhh--HHhhhhhhHH---HHHHHHHHHhhhccC
Confidence 2333211 11 1222222356899999999998866544433221 1111111111 1234455543 2
Q ss_pred CeeeccccccccccCCCCcccccccCCCeEEeccCCCCCcccCccC---CCHHHHH
Q 009436 467 LTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAIS---RYKPIWD 519 (535)
Q Consensus 467 ~i~~Ld~~WN~~~~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~---~y~~~W~ 519 (535)
.|..++.+|| ||. ....++--.+-+|+ |||...+.. .-..+|+
T Consensus 307 Pwerld~~yN----G~w--a~~ndlPylka~Hg----K~W~y~g~~fp~i~~~ew~ 352 (368)
T COG5597 307 PWERLDPRYN----GYW--ADANDLPYLKAWHG----KPWFYTGEQFPDIAGLEWP 352 (368)
T ss_pred chhhcCcccc----ccc--ccccccchHHHhhc----CcCCCCcccChhhhcCcCh
Confidence 4556666666 432 11122223345664 999987643 1355666
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=94.03 E-value=0.11 Score=50.53 Aligned_cols=141 Identities=17% Similarity=0.084 Sum_probs=74.9
Q ss_pred chhhhHHHH-hhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhhccCCCcccccCCCCCC
Q 009436 337 LSLLNHLRF-YIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQA 415 (535)
Q Consensus 337 lS~~~y~Rf-~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~ln~s~p~i~~~f~~~~ 415 (535)
+..+...|. ++-+++..=--|+|+|+|+|..+|..+++ +-.+.-+.+..|+.... ......
T Consensus 48 ~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~----------------~~~~~~ 109 (212)
T PF03407_consen 48 FQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGT----------------NSDRNG 109 (212)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhh--ccCCCceEEecCCCccc----------------chhhcC
Confidence 334455666 35556655336999999999999999998 21333344333543210 011123
Q ss_pred CceeeeeeeeechHHHHHhHHHH-HHHHHHHcCCccccccCCCCHHHhhhccC--------eeeccccccccccCCCCc-
Q 009436 416 CGWAFGMNAFDLIAWRKANVTAR-YHYWQEQNADRTLWKLGTLPPALLAFYGL--------TEPLDRRWHVLGLGYDMN- 485 (535)
Q Consensus 416 ~yfNSGVmLinL~~WR~~~it~~-~~~~~~~n~d~~l~~~gdl~~~nl~F~~~--------i~~Ld~~WN~~~~gy~~~- 485 (535)
..+|+|++.+.-.. -+.. +..|.+...+..- ..||.+++.++... +..||...-..|.+|-..
T Consensus 110 ~~~n~G~~~~r~t~-----~~~~~~~~w~~~~~~~~~--~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~ 182 (212)
T PF03407_consen 110 NLVNTGFYYFRPTP-----RTIAFLEDWLERMAESPG--CWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQS 182 (212)
T ss_pred CccccceEEEecCH-----HHHHHHHHHHHHHHhCCC--cchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccceeec
Confidence 34599999986544 3333 3346553222111 12566776655543 445555433333333211
Q ss_pred ccc-cc--cCCCeEEeccCC
Q 009436 486 IDN-RL--IESAAVIHFNGN 502 (535)
Q Consensus 486 i~~-~~--i~~a~IIHy~G~ 502 (535)
... .. ...|.+||.++.
T Consensus 183 ~~~~~~~~~~~p~~vH~n~~ 202 (212)
T PF03407_consen 183 RDWAWVPTKNKPYIVHANCC 202 (212)
T ss_pred chhhhhccccccceEEEcCC
Confidence 011 11 357999999873
No 25
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=94.03 E-value=0.35 Score=52.22 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=86.2
Q ss_pred CCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCC--cceeehhhhhhhHhhhhhccCCCcccccCC
Q 009436 334 PRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGN--VNGAVETCLEAFHRYYKYLNFSNPIISSKF 411 (535)
Q Consensus 334 ~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~--~iaAV~dc~~~f~r~~~~ln~s~p~i~~~f 411 (535)
+.+++..-++|=.+- -+|+.+-|-|||+|+||..-- +++.+..+ .+-.+.. +. ..-+
T Consensus 179 p~~WaKlpaLR~aM~-~~PeaEWiWWLDsDALImNms---felPlery~~~NlVihg-------~~----------~~l~ 237 (429)
T PLN03182 179 AGFWAKLPLLRKLML-AHPEVEWIWWMDSDALFTDMT---FEIPLEKYEGYNLVIHG-------WD----------ELVY 237 (429)
T ss_pred CcchhHHHHHHHHHH-HCCCceEEEEecCCceeecCC---CCCCHhHcCCcCeeecc-------ch----------hhhe
Confidence 456666666665543 378999999999999998621 12222211 0111110 00 0011
Q ss_pred -CCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHc-----------------CCccccccCCCCHHHhhh------ccC
Q 009436 412 -DPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQN-----------------ADRTLWKLGTLPPALLAF------YGL 467 (535)
Q Consensus 412 -~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n-----------------~d~~l~~~gdl~~~nl~F------~~~ 467 (535)
.++-.+.|+|+++|-...|--.-+. .|.... .++..+...||.++..+. ++.
T Consensus 238 ~~kdW~GLNtGsFLIRNcqWSldlLD----aWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~~ 313 (429)
T PLN03182 238 DQKSWIGLNTGSFLIRNCQWSLDLLD----AWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWGD 313 (429)
T ss_pred eccccCccceeeEEEEcCHHHHHHHH----HHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhcc
Confidence 2345689999999988888654322 233221 244455556777654322 223
Q ss_pred eeeccccccccccC------CCCcc-----cccccCCCeEEeccCCCCCcccCccCCCHHHHHH
Q 009436 468 TEPLDRRWHVLGLG------YDMNI-----DNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDR 520 (535)
Q Consensus 468 i~~Ld~~WN~~~~g------y~~~i-----~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~ 520 (535)
-..|...|-+.|.. |.... .....+-|-|.||+| .||....+..+-..-|..
T Consensus 314 kv~le~~y~l~Gyw~~iv~~yee~~~~~~~g~gd~rwPfvtHF~G-ckpC~~~~~y~~~~C~~~ 376 (429)
T PLN03182 314 KVYLENSYYLHGYWVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVG-CKPCGGYGDYPVERCLKQ 376 (429)
T ss_pred ceEEeecceeccccHHHHHHHHHHHHhcCCCCCCcccceeEeecc-ceecCCCCCcCHHHHHHH
Confidence 34566666665531 11000 012345689999999 899966543233444443
No 26
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=88.50 E-value=8.9 Score=41.17 Aligned_cols=39 Identities=36% Similarity=0.685 Sum_probs=26.4
Q ss_pred ccccccccchhhhhHHH----H----HHHHHHHHHHHHHhhcccCCC
Q 009436 5 AAEYRRPVRRRLSCWIW----A----LLGLFSIAGLVLFIVQHNHHE 43 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~ 43 (535)
+..|-|.+-+.-++|.. | |+-++.|+||||||+-++-|.
T Consensus 8 ~~~y~R~G~~~kgC~YYlryfFlF~SLIQ~LIIlgLVLFmVYGn~h~ 54 (442)
T PF06637_consen 8 GGPYSRAGGKGKGCWYYLRYFFLFVSLIQFLIILGLVLFMVYGNVHV 54 (442)
T ss_pred CCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcch
Confidence 34455566566677732 2 334778999999999999754
No 27
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=82.89 E-value=3.8 Score=42.01 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=26.8
Q ss_pred hcccccCCCeEEEEecCeeeccCChhhhcCC
Q 009436 347 IPEIYPQLEKIVFLDDDVVVQKDLTPLFSLD 377 (535)
Q Consensus 347 LPellP~ldKVLYLD~DvVV~~DLseLw~iD 377 (535)
+.-++...+.||+||+|+|...|.+.||+.+
T Consensus 84 lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 84 LALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred hhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 4446777999999999999999999999863
No 28
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=82.06 E-value=5.7 Score=35.22 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHHHHHHHhhhh
Q 009436 101 HRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDI-ATTIMTMKSHIQALEERANAATVQS 179 (535)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~kl~~~~~~~e~~~~~~~~~~ 179 (535)
.++.-||+.-+-++|.+|..+...++ .++.+.=.+.+.+|.+++...-+- ..++.+-|+++..+|+-++.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~----~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAG----DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh----hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 67888999999999999998876653 366777777888888888766666 7899999999999999998876555
No 29
>PLN03181 glycosyltransferase; Provisional
Probab=80.09 E-value=13 Score=40.56 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCcchhhhHHHHhhcccccCCCeEEEEecCeeeccC
Q 009436 334 PRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKD 369 (535)
Q Consensus 334 ~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~D 369 (535)
+..++..-..|=.+- -+|+.+-|-|||.|+||...
T Consensus 180 p~~WaKipalRaAM~-a~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 180 NSYWAKLPVVRAAML-AHPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred chhhhHHHHHHHHHH-HCCCceEEEEecCCceeecC
Confidence 345655555553332 28999999999999999855
No 30
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=76.68 E-value=1.6 Score=44.01 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=12.6
Q ss_pred ccCCCeEEEEecCeeeccCChhh
Q 009436 351 YPQLEKIVFLDDDVVVQKDLTPL 373 (535)
Q Consensus 351 lP~ldKVLYLD~DvVV~~DLseL 373 (535)
+|+.+-|+|||+|++|..-=-+|
T Consensus 74 ~P~~~wv~~lD~Dali~n~~~~L 96 (239)
T PF05637_consen 74 YPEAEWVWWLDSDALIMNPDFSL 96 (239)
T ss_dssp -TT-SEEEEE-TTEEE-------
T ss_pred CCCCCEEEEEcCCeEEEeccccc
Confidence 38899999999999997544444
No 31
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=73.75 E-value=11 Score=41.34 Aligned_cols=117 Identities=12% Similarity=0.281 Sum_probs=61.8
Q ss_pred ceeEEE-EeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHH
Q 009436 229 LYHFCI-FSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK 307 (535)
Q Consensus 229 ~ihiv~-~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~ 307 (535)
.+.|++ +++...++.-+|.|++++....+++.+.|--|+-+.+..+..- .+... + ..|++.+ ..|+..
T Consensus 94 ~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~---~y~~~-v--~~i~~~~-----~~~i~~ 162 (434)
T PF03071_consen 94 VIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIK---SYGDQ-V--TYIQHPD-----FSPITI 162 (434)
T ss_dssp ---EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHH---GGGGG-S--EEEE-S-------S----
T ss_pred cceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHH---Hhhhh-h--eeeecCC-----cCCcee
Confidence 445554 5555888999999999987655566666767776554443211 11111 1 1111100 001000
Q ss_pred hhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccC--CCeEEEEecCeeeccCChhhhc
Q 009436 308 QLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ--LEKIVFLDDDVVVQKDLTPLFS 375 (535)
Q Consensus 308 ~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~--ldKVLYLD~DvVV~~DLseLw~ 375 (535)
.+.+. ++ ..|..++.|++.-|-.+|.. +++||.|.+|+.|--|.=+-|+
T Consensus 163 ---------------~~~~~--~~--~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 163 ---------------PPKEK--KF--KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp ----------------TT-G--GG--HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred ---------------Ccccc--cc--cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 00000 01 14667889999999999964 8999999999999999877665
No 32
>PRK10132 hypothetical protein; Provisional
Probab=73.25 E-value=17 Score=32.47 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009436 101 HRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQST 180 (535)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 180 (535)
++|..||+.-+.++|.+|.++..++.- ++.+.=.+.+..+..|++..-|-..+..+.+.....+++-++.+--++.
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~~~----~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv 90 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDAKG----EAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 688999999999999999877665533 5566667777888888876677777777889999999999988766654
No 33
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=69.32 E-value=17 Score=30.63 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHHh
Q 009436 105 WELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAH--YDIATTIMTMKSHIQALEERANAAT 176 (535)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~kl~~~~~~~e~~~~~~~ 176 (535)
+++.-.|+.-|+++|.||+.-|+-.-..|.+.++....-+.+|++.. .|- .+...=...|+..|-|++.++
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 56778899999999999997666446677788888887777777654 444 677777888999998887665
No 34
>PRK09039 hypothetical protein; Validated
Probab=62.93 E-value=87 Score=33.41 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 009436 20 IWALLGLFSIAGLVLF 35 (535)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (535)
+=++.++++++.|||-
T Consensus 20 vd~~~~ll~~~~f~l~ 35 (343)
T PRK09039 20 VDALSTLLLVIMFLLT 35 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5577787777666643
No 35
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=62.65 E-value=28 Score=37.10 Aligned_cols=115 Identities=12% Similarity=0.216 Sum_probs=67.3
Q ss_pred eeEEEEeCC-CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHh
Q 009436 230 YHFCIFSDN-VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQ 308 (535)
Q Consensus 230 ihiv~~sDn-vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~ 308 (535)
+.|++++=| ..++.-+|.|++++.+..+...++|..|+-..+..+.--. +. . ++..+.+. +. .
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~---~~-~--~i~~i~~~---~~--~----- 65 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKS---FG-D--GVTHIQHP---PI--S----- 65 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHh---hc-c--ccEEEEcc---cc--c-----
Confidence 356665555 5689999999999743333578999999876554332111 11 0 11111110 00 0
Q ss_pred hhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccC--CCeEEEEecCeeeccCChhhhc
Q 009436 309 LLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ--LEKIVFLDDDVVVQKDLTPLFS 375 (535)
Q Consensus 309 l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~--ldKVLYLD~DvVV~~DLseLw~ 375 (535)
+. ..+...++ ..|..+..+++.-+-.+|-. +++||+||+|+++--|.-+.++
T Consensus 66 ----------~~---~~~~~~~~--~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~ 119 (334)
T cd02514 66 ----------IK---NVNPPHKF--QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQ 119 (334)
T ss_pred ----------cc---ccCccccc--chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHH
Confidence 00 00000011 14566777788888888865 8999999999999999655554
No 36
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=60.29 E-value=14 Score=39.58 Aligned_cols=149 Identities=13% Similarity=0.035 Sum_probs=76.6
Q ss_pred ccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhh-----hhHhhhh-hccCCCc--c---cccCCCC--CCCc
Q 009436 351 YPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLE-----AFHRYYK-YLNFSNP--I---ISSKFDP--QACG 417 (535)
Q Consensus 351 lP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~-----~f~r~~~-~ln~s~p--~---i~~~f~~--~~~y 417 (535)
|.++++++|+|+|+.+..+..+.+++-.. .-.+...|.. .-..++. +....++ . ....+.. ..+.
T Consensus 122 ~~~~~a~i~~~~~i~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 199 (369)
T KOG1950|consen 122 LIEDGAAIYLVDDIQRFRNDDANFDVPNE--LNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLI 199 (369)
T ss_pred eeccCceEEEecchhhccCccccccccch--hcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccce
Confidence 55689999999999999999988866322 2222222211 0000110 1111111 0 0111222 3556
Q ss_pred eeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhccCeeeccccccccc-cCCCCc--cc--ccccC
Q 009436 418 WAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLG-LGYDMN--ID--NRLIE 492 (535)
Q Consensus 418 fNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~i~~Ld~~WN~~~-~gy~~~--i~--~~~i~ 492 (535)
||+|++++-....--.. +........-+..+++..++..|...-.+.+...|..- .++... .+ .....
T Consensus 200 ~n~~~~v~~ps~~~~~~-------~~~~~~~~~~~~~~~q~~l~~~f~~~~~~~~~~~n~~~~~~~~~p~~~~l~~~~~~ 272 (369)
T KOG1950|consen 200 FNSGLLVFEPSLCNYKD-------LMEFSEEFESYNGADQGFLHLIFSWIPDRPPPSVNLNLAKLWRHPKKNDLSRASSV 272 (369)
T ss_pred eccCccccCCCccchhh-------HHHhhcccCCCCCccchhhHHHhhcccCCCcccccccccccccCccccchhhcccc
Confidence 99999998665543322 33333323345556777777777544447777666552 222111 11 11112
Q ss_pred CCeEEeccCCCCCccc
Q 009436 493 SAAVIHFNGNMKPWLK 508 (535)
Q Consensus 493 ~a~IIHy~G~~KPW~~ 508 (535)
.-..+||.|..|||..
T Consensus 273 ~~~~~~y~~~~~p~~~ 288 (369)
T KOG1950|consen 273 LRYALHYLGANKPELC 288 (369)
T ss_pred cchhhhccccCCCCcc
Confidence 2235699997677754
No 37
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=59.28 E-value=4.8 Score=43.31 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=23.2
Q ss_pred hhHHHHhhcccccCCCeEEEEecCeeeccCChhhhc
Q 009436 340 LNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFS 375 (535)
Q Consensus 340 ~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~ 375 (535)
.+..|+.+ +.. |. =||||+|+||.++++.|=|
T Consensus 228 Sdl~RLA~--LyK-YG-GvYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 228 SDLSRLAL--LYK-YG-GVYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHH--HHH-hC-CEEeeccEEEecccccccc
Confidence 35577765 222 22 3899999999999999864
No 38
>PLN02742 Probable galacturonosyltransferase
Probab=59.04 E-value=68 Score=36.25 Aligned_cols=69 Identities=13% Similarity=-0.002 Sum_probs=40.6
Q ss_pred ChhhHHHHHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHH
Q 009436 73 SATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSL 143 (535)
Q Consensus 73 ~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (535)
+...+++.|+-||-=..--++-|-..+..-...+...+|+.+|.+|++|..-..= -+.+..|+++|=+.
T Consensus 97 ~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~~d--~~~~~~klr~~l~~ 165 (534)
T PLN02742 97 NNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLHYD--SATTIMTLKAHIQA 165 (534)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHH
Confidence 4566778888777544444444444333211267889999999999999653222 33444455544333
No 39
>PRK05529 cell division protein FtsQ; Provisional
Probab=58.73 E-value=7.8 Score=39.48 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=6.5
Q ss_pred cCeeeccCChhh
Q 009436 362 DDVVVQKDLTPL 373 (535)
Q Consensus 362 ~DvVV~~DLseL 373 (535)
.-+|+-||.+.+
T Consensus 213 G~~V~~G~~~~~ 224 (255)
T PRK05529 213 GKTVFWGSFENS 224 (255)
T ss_pred CEEEEeCCcchH
Confidence 344446666653
No 40
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=57.22 E-value=92 Score=26.24 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=27.4
Q ss_pred EeCCCcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHh
Q 009436 235 FSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAW 276 (535)
Q Consensus 235 ~sDnvlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~w 276 (535)
+.++...+.-++.|+...... ...++|++++.+.+....+
T Consensus 5 ~~~~~~~l~~~l~s~~~~~~~--~~~i~i~~~~~~~~~~~~~ 44 (156)
T cd00761 5 AYNEEPYLERCLESLLAQTYP--NFEVIVVDDGSTDGTLEIL 44 (156)
T ss_pred ecCcHHHHHHHHHHHHhCCcc--ceEEEEEeCCCCccHHHHH
Confidence 344455667788898887653 4788999988776555443
No 41
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=55.74 E-value=2.5e+02 Score=29.19 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=62.4
Q ss_pred cccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhhccC---CCccccc--CCCCCCCceeeeeee
Q 009436 350 IYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNF---SNPIISS--KFDPQACGWAFGMNA 424 (535)
Q Consensus 350 llP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~ln~---s~p~i~~--~f~~~~~yfNSGVmL 424 (535)
++-++|-+.++|+|+++++++.. + .| |..+|....-.. . .....| .+|.-.. +++.+..|+.+|++=
T Consensus 120 ~~~e~DYlF~~dvd~~F~~~ig~--E-~L-g~lva~lHp~~y--~--~~~~~fpYERrp~S~AyIp~~eGdfYy~Ga~~G 191 (271)
T cd02515 120 IGHEVDYLFCMDVDMVFQGPFGV--E-TL-GDSVAQLHPWWY--G--KPRKQFPYERRPSSAAYIPEGEGDFYYHGAVFG 191 (271)
T ss_pred hcccCCEEEEeeCCceEeecCCH--H-Hh-hhhheecChhhh--c--CCCCCCCCcCCCCccccccCCCCCeEEeeeecC
Confidence 45679999999999999999872 1 12 335554432110 0 000011 0111011 345677888888874
Q ss_pred eechHHHHHhHHHHHHHHHHH---cCCccccccCCCCHHHh-hhccC-eeecccccccccc
Q 009436 425 FDLIAWRKANVTARYHYWQEQ---NADRTLWKLGTLPPALL-AFYGL-TEPLDRRWHVLGL 480 (535)
Q Consensus 425 inL~~WR~~~it~~~~~~~~~---n~d~~l~~~gdl~~~nl-~F~~~-i~~Ld~~WN~~~~ 480 (535)
=-..... ++++.|+.-+.. |+=...|.+- .-+|- .+.++ ++.|++.|.+...
T Consensus 192 G~~~~vl--~l~~~c~~~i~~D~~n~I~A~wHDE--SHLNkYf~~~Kp~KiLSPeY~w~e~ 248 (271)
T cd02515 192 GSVEEVY--RLTRACHEGILADKANGIEARWHDE--SHLNKYFLLHKPTKVLSPEYLWDDR 248 (271)
T ss_pred ccHHHHH--HHHHHHHHHHHHHHhCCceEEeecH--hHhHHHHhhCCCCeecChhhcCCcc
Confidence 3333322 356666654321 2222356432 22333 22333 8999999888753
No 42
>PRK10404 hypothetical protein; Provisional
Probab=55.52 E-value=53 Score=28.98 Aligned_cols=80 Identities=6% Similarity=0.021 Sum_probs=56.7
Q ss_pred hCCchHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHH-HHHHHHHHHHHHHHHHHHH
Q 009436 97 EHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIAT-TIMTMKSHIQALEERANAA 175 (535)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~kl~~~~~~~e~~~~~~ 175 (535)
..+.+++..||+.-+.++|.+|..+..++ -..+.+.=++.+..+..++...-|-.. +..+.|+....+++-++.+
T Consensus 4 ~~~~~~l~~dl~~L~~dle~Ll~~~~~~a----~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~ 79 (101)
T PRK10404 4 QFGDTRIDDDLTLLSETLEEVLRSSGDPA----DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEK 79 (101)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578899999999999999998776554 224555555666667766654444443 3445799999999999887
Q ss_pred hhhhh
Q 009436 176 TVQST 180 (535)
Q Consensus 176 ~~~~~ 180 (535)
--|+.
T Consensus 80 Pw~av 84 (101)
T PRK10404 80 PWQGI 84 (101)
T ss_pred cHHHH
Confidence 66653
No 43
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=54.01 E-value=53 Score=24.56 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhh
Q 009436 81 LAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLS 119 (535)
Q Consensus 81 ~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~ 119 (535)
|-.|+..-++|..-||..+...=+.-|..+++|+++-+.
T Consensus 1 LleQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~~ 39 (42)
T PF11464_consen 1 LLEQINIIESYIKQAKAARRFDEVATLEENLRELQDEID 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999987653
No 44
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=45.05 E-value=63 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHH
Q 009436 105 WELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMT 160 (535)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k 160 (535)
.+|++-|..+||+ ..+-......+..+-+.||..+||.+.+-+-
T Consensus 4 ~~Lr~~ieRiErL------------EeEk~~i~~dikdVyaEAK~~GfD~K~lr~i 47 (74)
T PF10073_consen 4 EQLRQFIERIERL------------EEEKKAISDDIKDVYAEAKGNGFDTKALRQI 47 (74)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5788888888887 4555667788899999999999999876443
No 45
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=40.32 E-value=3e+02 Score=29.53 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=55.5
Q ss_pred cccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhhccC---CCccccc--CCCCCCCceeeee
Q 009436 348 PEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNF---SNPIISS--KFDPQACGWAFGM 422 (535)
Q Consensus 348 PellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~ln~---s~p~i~~--~f~~~~~yfNSGV 422 (535)
-.++-++|-+.++|+|+++++++.. +.=|..+|....-.- .+ ..-.| .+|.-.. +++.+..|+.+|+
T Consensus 183 ~~~~~EvDYLFc~dvd~~F~~~vGv----E~Lg~lva~LHp~~y--~~--~~~~FpYERrp~S~AyIp~~eGDfYY~ga~ 254 (337)
T PF03414_consen 183 QHIQHEVDYLFCMDVDMVFQDHVGV----EILGDLVATLHPWFY--FK--PRESFPYERRPKSQAYIPYGEGDFYYHGAF 254 (337)
T ss_dssp HCHHHH-SEEEEEESSEEE-S-B-G----GG-SSEEEEESTTTT--TS--TGGGS--B-STTSTTB--TT--S--EECCE
T ss_pred HHHhhcCCEEEEEecceEEecccCH----HHHHHHHHHhCHHHH--CC--ChhhCccccCccccccccCCCCCeEEecee
Confidence 4466779999999999999998874 222566666553211 00 00011 1111011 2456778888887
Q ss_pred eeeechHHHHHhHHHHHHHHHH---HcCCccccccCCCCHHHhh--hccCeeeccccccccc
Q 009436 423 NAFDLIAWRKANVTARYHYWQE---QNADRTLWKLGTLPPALLA--FYGLTEPLDRRWHVLG 479 (535)
Q Consensus 423 mLinL~~WR~~~it~~~~~~~~---~n~d~~l~~~gdl~~~nl~--F~~~i~~Ld~~WN~~~ 479 (535)
+==-..+-. ++++.|+.-+. .|+=..+|.+- .-+|-. .+..++.|++.|++..
T Consensus 255 fGGt~~~vl--~Lt~~c~~~i~~D~~n~I~A~WhDE--SHLNKYfl~~KPtKvLSPEY~Wd~ 312 (337)
T PF03414_consen 255 FGGTVEEVL--RLTEACHQGIMQDKANGIEALWHDE--SHLNKYFLYHKPTKVLSPEYCWDE 312 (337)
T ss_dssp EEECHHHHH--HHHHHHHHHHHHHHHTT---TTCHH--HHHHHHHHHS--SEEE-GGGSBSH
T ss_pred cCCcHHHHH--HHHHHHHHHHHhhhhcCceEeccch--hhhHHHHhhCCCceecCHHHccCc
Confidence 653333322 36666665432 23323456421 223432 2455889999988764
No 46
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=39.77 E-value=18 Score=28.97 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 009436 20 IWALLGLFSIAGLVL 34 (535)
Q Consensus 20 ~~~~~~~~~~~~~~~ 34 (535)
+|++++++.+++++|
T Consensus 46 ~~~li~aLi~v~vvL 60 (64)
T COG4068 46 LMFLILALILVMVVL 60 (64)
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999887777665
No 47
>PHA00407 phage lambda Rz1-like protein
Probab=39.77 E-value=19 Score=30.24 Aligned_cols=63 Identities=25% Similarity=0.314 Sum_probs=39.3
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchhhccchhhhhhhccccccccccC
Q 009436 6 AEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQVERKVLNFTKEILS 73 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (535)
..|+-..+.++..|-=+|+|+|.+.....-+-.+.. .-+++++- ..-..+.| -..|.|.|+++
T Consensus 18 ~~y~~stkktl~rwkaaLIGlllicv~tISGCaSes-~lp~ep~k---~TVDaSLM-VepNlT~~ml~ 80 (84)
T PHA00407 18 MKYRLSTKKTLRRWKAALIGLLLICVATISGCASES-NLPVEPQK---VTVDASLM-VEPNLTKEMLS 80 (84)
T ss_pred hcCcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhcc-cCCCCccc---ceeeeeee-eCcchhHHHHH
Confidence 345556677888998899999999887777766653 21222222 22223344 33688888765
No 48
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.52 E-value=1e+02 Score=25.91 Aligned_cols=60 Identities=12% Similarity=0.283 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Q 009436 105 WELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERA 172 (535)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~ 172 (535)
+.+++-+++.++.+... .+++.+..+.++.++.++++..-|.+....++..+.++.++--
T Consensus 22 ~~l~~~l~~~~~ti~~l--------~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g 81 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTL--------QEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG 81 (90)
T ss_pred HHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555566666665554 4556667788888888888888888888888888888776543
No 49
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=37.77 E-value=1.9e+02 Score=34.47 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhh
Q 009436 133 AEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLS 202 (535)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~ 202 (535)
+.+.+..|.+.+..+++.--.-+.....|+.....+++.++..|.+-...-+=. =+-+ .|..++-.
T Consensus 237 ~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~-C~~~---~C~~i~~~ 302 (806)
T PF05478_consen 237 ALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDL-CTNR---ECNSILSS 302 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCh---hhHHHHHh
Confidence 345556666666666666666677777888888888888888877655433221 1222 68876443
No 50
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.88 E-value=4.5e+02 Score=26.45 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHhhCCchHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Q 009436 92 VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEER 171 (535)
Q Consensus 92 ~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~ 171 (535)
+-.|-..|++.|+++.-.+++.+|..+..- ..-+...+..+.+.+...-...+.+..+++-..++.-+
T Consensus 75 A~~Al~~g~E~LAr~al~~~~~le~~~~~~------------~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 75 AELALQAGNEDLAREALEEKQSLEDLAKAL------------EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888899988888888887653321 11122222222222222222334444555555555555
Q ss_pred HHHHhhhhhHhHhhhccc
Q 009436 172 ANAATVQSTLFGQLLAES 189 (535)
Q Consensus 172 ~~~~~~~~~~~~~la~~~ 189 (535)
...++-+......++.-+
T Consensus 143 ~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 143 KAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 555555555555554433
No 51
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.32 E-value=2.2e+02 Score=27.76 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=78.3
Q ss_pred ccChhhHHHHHhH-HHHHHHHHHHHHhhCCchHHH-HHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhc
Q 009436 71 ILSATSFSRQLAE-QIILAKAYVIIAKEHNNHRLA-WELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQ 148 (535)
Q Consensus 71 ~~~~~~~~~~~~d-~~~~a~~y~~~a~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (535)
-.-++-+-|-++. -.-+||.|++-|=.+.|+.+- --|.+|+-.....+--|.+.... ..+....+|.|+..+.-+.
T Consensus 33 K~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~V--t~sM~gVvK~md~alktmN 110 (203)
T KOG3232|consen 33 KAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKV--TKSMAGVVKSMDSALKTMN 110 (203)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCC
Confidence 3334445555555 678999998888777776542 35777777766666555555555 5566677777777775442
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhc----cccCcccchhhhH
Q 009436 149 DAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLA----ESLPKSLHCLKVK 200 (535)
Q Consensus 149 ~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~----~~~Pk~~hcl~~r 200 (535)
-.|+.++++..|.|..-...|..+...-.+ -++|++--=..|.
T Consensus 111 ---------Lekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq 157 (203)
T KOG3232|consen 111 ---------LEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQ 157 (203)
T ss_pred ---------HHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHH
Confidence 357888999999998888888887665443 3456664433333
No 52
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=35.84 E-value=1.5e+02 Score=25.15 Aligned_cols=75 Identities=19% Similarity=0.072 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 009436 102 RLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIA-TTIMTMKSHIQALEERANAATVQST 180 (535)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~kl~~~~~~~e~~~~~~~~~~~ 180 (535)
.+..||.+-+.+++.+++.....+ ...+.+.-..++..+..+++..-|-. .+..+.+.....+|+.++.+--++.
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~----~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~sv 77 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA----GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSV 77 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 456778888888888877665443 22333444444445544444333322 4667789999999999988877765
No 53
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=35.71 E-value=19 Score=31.11 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=27.4
Q ss_pred CcchhhhHHHHhhcccccCCCeEEEEecCeeeccCC-hhhh
Q 009436 335 RYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDL-TPLF 374 (535)
Q Consensus 335 ~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DL-seLw 374 (535)
.+.....++|+.+=-...- ||+|.|+++.+++ +++-
T Consensus 61 ~~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPWL 97 (103)
T ss_pred chHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhhh
Confidence 3455678899988555544 8999999999999 6543
No 54
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.15 E-value=53 Score=34.12 Aligned_cols=41 Identities=29% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCchHHHHHHHHHHHHHhcccc-----------cchHHHHHHHHHHHHHHHH
Q 009436 130 LDEAEPIISSLSSLIFTAQDAH-----------YDIATTIMTMKSHIQALEE 170 (535)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-----------~d~~~~~~kl~~~~~~~e~ 170 (535)
-++|.+-|+.+.++|.-+|+.. .|...=-+||..+|++||=
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 5677888888888887776543 4666666779999999983
No 55
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=34.86 E-value=53 Score=34.62 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHhhcccccCCCeEEEEecCeeeccCChhhhcCCC--CCCcceeeh
Q 009436 343 LRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDL--HGNVNGAVE 387 (535)
Q Consensus 343 ~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL--~g~~iaAV~ 387 (535)
.+++...+||+++--||+|+-+.+.+|...|.+-=+ ++..+|+..
T Consensus 142 ~K~lpHrlfp~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~ 188 (305)
T PF04765_consen 142 PKLLPHRLFPNYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISK 188 (305)
T ss_pred cceeccccCCCCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeC
Confidence 466777899999999999999999999887765323 445566644
No 56
>PRK13694 hypothetical protein; Provisional
Probab=34.82 E-value=1.1e+02 Score=26.16 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHH
Q 009436 104 AWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIM 159 (535)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 159 (535)
..+|++=|.-+||+ ..+-...-..+..+.+.||..+||.+.+-+
T Consensus 11 ~~~Lr~fIERIERL------------EeEkk~i~~dikdVyaEAK~~GfD~K~~r~ 54 (83)
T PRK13694 11 KEQLRAFIERIERL------------EEEKKTISDDIKDVYAEAKGNGFDVKALKT 54 (83)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 45788888888887 445566677888899999999999987643
No 57
>PHA01346 hypothetical protein
Probab=33.76 E-value=1.6e+02 Score=22.25 Aligned_cols=44 Identities=27% Similarity=0.139 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHh
Q 009436 100 NHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTA 147 (535)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (535)
|.-+.+||+..|-|+.|+--.|..|.|. +-++.-..++.++.+-
T Consensus 5 ntllmqelrllicelkrlrlsavsdpdf----sqekihaeldsllrkl 48 (53)
T PHA01346 5 NTLLMQELRLLICELKRLRLSAVSDPDF----SQEKIHAELDSLLRKL 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCc----cHHHHHHHHHHHHHHH
Confidence 5668899999999999886666555544 3334445566666554
No 58
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=33.40 E-value=3.7 Score=34.82 Aligned_cols=12 Identities=42% Similarity=1.262 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHH
Q 009436 18 CWIWALLGLFSI 29 (535)
Q Consensus 18 ~~~~~~~~~~~~ 29 (535)
.|+|+|+-+|+|
T Consensus 66 rwlwLlikl~lV 77 (81)
T PF14812_consen 66 RWLWLLIKLFLV 77 (81)
T ss_dssp -----TTTTHCC
T ss_pred hhHHHHHHHHHH
Confidence 579999887776
No 59
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.16 E-value=1.4e+02 Score=30.18 Aligned_cols=138 Identities=10% Similarity=0.063 Sum_probs=90.5
Q ss_pred cccccccChhhHHHHHhHHHHHHHHHHHHH-hhC-CchHHHHHHHHHHHHHHHHhhhhhc-------------cCCCCCC
Q 009436 66 NFTKEILSATSFSRQLAEQIILAKAYVIIA-KEH-NNHRLAWELSKKIRSCQLLLSKAAM-------------RGEPITL 130 (535)
Q Consensus 66 ~~~~~~~~~~~~~~~~~d~~~~a~~y~~~a-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~ 130 (535)
++.+|....-.-.++++.|+-..++|..-. +.- ++.+-..+|.++|.+++..-.+-.. ..|+ |
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~--P 123 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL--P 123 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C
Confidence 566777777778899999999999993322 211 2344445666666666533222111 2455 5
Q ss_pred CchHH---HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHHh
Q 009436 131 DEAEP---IISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVR 207 (535)
Q Consensus 131 ~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~ 207 (535)
-...+ +++.++.++.++. - +...|+|.++.+...++..-..-+.+=..+...|-|..--+|-+=...=||.
T Consensus 124 f~~~eR~~Rl~~L~~~l~~~d-----v-~~~ek~r~vlea~~~E~~yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~ 197 (251)
T PF11932_consen 124 FLLEERQERLARLRAMLDDAD-----V-SLAEKFRRVLEAYQIEMEYGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQ 197 (251)
T ss_pred CChHHHHHHHHHHHHhhhccC-----C-CHHHHHHHHHHHHHHHHHhCCceeEEEEEEeECCeEEEEEEEeecchhheeE
Confidence 55554 4444555554432 2 3457899999999999999888888888888888888888887777777776
Q ss_pred Cchh
Q 009436 208 SKHI 211 (535)
Q Consensus 208 ~~~~ 211 (535)
+.+.
T Consensus 198 t~Dg 201 (251)
T PF11932_consen 198 TLDG 201 (251)
T ss_pred CCCc
Confidence 6553
No 60
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.51 E-value=3.2e+02 Score=27.01 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=59.3
Q ss_pred ChhhHHHHHhHHHHHHHHH--HHHHhhCCchHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCCchHHHHHHHHHHHHHhc
Q 009436 73 SATSFSRQLAEQIILAKAY--VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAM--RGEPITLDEAEPIISSLSSLIFTAQ 148 (535)
Q Consensus 73 ~~~~~~~~~~d~~~~a~~y--~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (535)
..+..++.|+|+|.-||.= -.+|....-.+-..++..++.+.+.---.|-. +.+| -+++.......+..+..-+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdL--Ar~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDL--ARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3466778888877766653 22333333333445555566655543333322 3344 5556555555555555555
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 009436 149 DAHYDIATTIMTMKSHIQALEERANAATVQ 178 (535)
Q Consensus 149 ~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~ 178 (535)
...-.-...+.+|+.-+..+|.++...+.+
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777888888888777666443
No 61
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.71 E-value=25 Score=31.92 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 009436 21 WALLGLFSIAGLVLF 35 (535)
Q Consensus 21 ~~~~~~~~~~~~~~~ 35 (535)
|+|+++|+++.|++|
T Consensus 2 W~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 2 WVLFAIIIVAILLFL 16 (130)
T ss_pred eeeHHHHHHHHHHHH
Confidence 455555444444433
No 62
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=29.96 E-value=4.1e+02 Score=29.61 Aligned_cols=41 Identities=5% Similarity=0.149 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHH
Q 009436 161 MKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWV 206 (535)
Q Consensus 161 l~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~ 206 (535)
+...+..++++...-..=......||-+| +-|++==+-|-.
T Consensus 345 ~~~~~~~l~~~~~~I~~i~~~I~~Ia~QT-----NLLALNAaIEAA 385 (553)
T PRK15048 345 VVKTMHEIADSSKKIADIISVIDGIAFQT-----NILALNAAVEAA 385 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 33333334444433333344555666666 445555555533
No 63
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=28.91 E-value=3.2e+02 Score=24.14 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=31.4
Q ss_pred ChhhHHHHHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhhhhc-cCCCCCCCchHHHHHHH
Q 009436 73 SATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAM-RGEPITLDEAEPIISSL 140 (535)
Q Consensus 73 ~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 140 (535)
+.+.+.+.|++++.--+.-... ......++-.+.-...+++..++.+... ...+ |..+.+.++++
T Consensus 43 qq~~~~~~L~~~~~~~r~~~~~-~~~~~qq~r~~~e~~~e~ik~~lk~d~Ca~~~~--P~~V~d~L~~~ 108 (110)
T PF10828_consen 43 QQEDANQELKAQLQQNRQAVEE-QQKREQQLRQQSEERRESIKTALKDDPCANTAV--PDAVIDSLRRL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCccccCCC--CHHHHHHHHHh
Confidence 4555667777777655543331 1111223333444444444444433322 2334 77777776654
No 64
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=28.63 E-value=60 Score=30.75 Aligned_cols=31 Identities=39% Similarity=0.526 Sum_probs=16.7
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhccc
Q 009436 10 RPVRRRLSCWIWALLGLFSIAGLVLFIVQHN 40 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (535)
|++|+||.-.+-.++|+-+..||+|+.+..|
T Consensus 3 ~r~r~Rl~~il~~~a~l~~a~~l~Lyal~~n 33 (153)
T COG2332 3 RRRRKRLWIILAGLAGLALAVGLVLYALRSN 33 (153)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3445665333334444555556667776655
No 65
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=28.38 E-value=44 Score=32.62 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=25.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhcccC
Q 009436 12 VRRRLSCWIWALLGLFSIAGLVLFIVQHNH 41 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (535)
.-||+|+.+|+.+-+++-.|+.|..+.+.-
T Consensus 15 GSRR~SNy~wA~i~~~G~~GFll~g~SSYl 44 (184)
T CHL00036 15 GSRRISNFFWAFILFLGSLGFLLVGISSYL 44 (184)
T ss_pred cccchhHHHHHHHHHhhhHHHHHhhhHHhh
Confidence 678999999999888888888888887664
No 66
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=27.58 E-value=3.6e+02 Score=23.13 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=22.5
Q ss_pred CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHH
Q 009436 239 VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGA 272 (535)
Q Consensus 239 vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~ 272 (535)
...+.-+|.|++..... ...+.|+.|+-+...
T Consensus 9 ~~~l~~~l~sl~~q~~~--~~~iivvdd~s~d~t 40 (180)
T cd06423 9 EAVIERTIESLLALDYP--KLEVIVVDDGSTDDT 40 (180)
T ss_pred HHHHHHHHHHHHhCCCC--ceEEEEEeCCCccch
Confidence 45667788998886653 478888888765443
No 67
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.73 E-value=4.2e+02 Score=33.14 Aligned_cols=61 Identities=20% Similarity=0.114 Sum_probs=31.4
Q ss_pred chhhccchhhhhhhccccccccccChhhHHHHHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 009436 49 LALEKSARTEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSC 114 (535)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~ 114 (535)
.+.++.++.|++.. -.++--++.+..-...++-+-.|+||.+-+ ..+-+.+++|-++|+++
T Consensus 1423 ~l~~~~ae~eq~~~---~v~ea~~~aseA~~~Aq~~~~~a~as~~q~--~~s~~el~~Li~~v~~F 1483 (1758)
T KOG0994|consen 1423 QLRSKLAEAEQTLS---MVREAKLSASEAQQSAQRALEQANASRSQM--EESNRELRNLIQQVRDF 1483 (1758)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34455555555441 133444555555556666666666665522 22334455555555554
No 68
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=26.41 E-value=41 Score=33.66 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=20.1
Q ss_pred hhcccccCCCeEEEEecCeeeccC
Q 009436 346 YIPEIYPQLEKIVFLDDDVVVQKD 369 (535)
Q Consensus 346 ~LPellP~ldKVLYLD~DvVV~~D 369 (535)
.+..++|+++-|++||+|+.|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 456788999999999999988643
No 69
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=26.29 E-value=52 Score=32.20 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhcccCC
Q 009436 12 VRRRLSCWIWALLGLFSIAGLVLFIVQHNHH 42 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (535)
.-||+|+.+|+.+-+++-.||.|..+.+.-+
T Consensus 19 GSRR~SNy~wA~i~~~G~~GFll~g~sSYl~ 49 (188)
T PRK02542 19 GSRRLSNYLWASMVTIGGIGFLLAGLSSYLG 49 (188)
T ss_pred cccchhHHHHHHHHHhhhHHHHHhhhHHhhC
Confidence 6789999999999888888888888877653
No 70
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=25.55 E-value=3.1e+02 Score=25.52 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=38.9
Q ss_pred CCchHHHHHHHHHHHHHhcccc-------cchHHHHHHH-------HHHHHHHHHHHHHHhhhhhHhHhhhcccc
Q 009436 130 LDEAEPIISSLSSLIFTAQDAH-------YDIATTIMTM-------KSHIQALEERANAATVQSTLFGQLLAESL 190 (535)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~~~~kl-------~~~~~~~e~~~~~~~~~~~~~~~la~~~~ 190 (535)
+..+.+.++-++-++.+-+... -.|..++.+. ..=..++|+++|.+-.|+. .+||+.|+
T Consensus 15 E~Gs~Dil~Ii~~l~~~~~~~~~~~~~Lk~~f~~~~~~~~~~~~~~~~e~Ka~EQRIRRai~~al--~nlAsLGl 87 (134)
T PF08664_consen 15 EAGSKDILKIIEYLIEQEKSFSQNFPSLKEIFEELAQKKLASDEEIEKEKKAIEQRIRRAIKQAL--TNLASLGL 87 (134)
T ss_pred ccCHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHH--HHHHHhCC
Confidence 3356677777777776544332 2334444333 4445788999999998885 89999887
No 71
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=25.16 E-value=4.9e+02 Score=23.63 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=27.4
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHhhCCc----hHHHHHHHHHHHHHHHHhhhhh
Q 009436 74 ATSFSRQLAEQIILAKAYVIIAKEHNN----HRLAWELSKKIRSCQLLLSKAA 122 (535)
Q Consensus 74 ~~~~~~~~~d~~~~a~~y~~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~ 122 (535)
.-..+..+.+.+..+|.-+.-+-..++ .....++.+.+++.+..+..-.
T Consensus 50 ~~~~l~~~~~~l~~~r~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 102 (171)
T PF02203_consen 50 QVNALADASSNLLQARLALNRALLQGDSPDAAELLARAEQNLEQAEQAFDAFK 102 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666666654333333333 3666666777777776666544
No 72
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=25.08 E-value=2.4e+02 Score=29.63 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=15.4
Q ss_pred cCcccchhhhHhhHHHHhCchh
Q 009436 190 LPKSLHCLKVKLSVDWVRSKHI 211 (535)
Q Consensus 190 ~Pk~~hcl~~rl~~e~~~~~~~ 211 (535)
+|+...=-.+|...|-.+|.-.
T Consensus 272 L~~~~e~~l~rivQEaltN~~r 293 (365)
T COG4585 272 LPPEAEDALFRIVQEALTNAIR 293 (365)
T ss_pred CChhHHHHHHHHHHHHHHHHHh
Confidence 5667667777888887766653
No 73
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=23.98 E-value=2.9e+02 Score=22.45 Aligned_cols=24 Identities=17% Similarity=0.064 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 009436 155 ATTIMTMKSHIQALEERANAATVQ 178 (535)
Q Consensus 155 ~~~~~kl~~~~~~~e~~~~~~~~~ 178 (535)
.++..-...++..+|..+..|.+-
T Consensus 64 ~t~~~~~~~~~~~~~~~a~~h~~~ 87 (91)
T PF00611_consen 64 GTLKNAWDSLLEETEQIAEQHSKL 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888777653
No 74
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.76 E-value=3.8e+02 Score=33.50 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=10.5
Q ss_pred hhCCchHHHHHHHHHHHHHHHHhhhh
Q 009436 96 KEHNNHRLAWELSKKIRSCQLLLSKA 121 (535)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 121 (535)
++.+-.....+-+..|.-.+.++++|
T Consensus 1526 sL~nVd~IL~~T~~di~ra~~L~s~A 1551 (1758)
T KOG0994|consen 1526 SLPNVDAILSRTKGDIARAENLQSEA 1551 (1758)
T ss_pred hcccHHHHHHhhhhhHHHHHHHHHHH
Confidence 33333333334444444444444443
No 75
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=23.27 E-value=91 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhh
Q 009436 15 RLSCWIWALLGLFSIAGLVLFIV 37 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (535)
..+.|||++++++.++.++++.+
T Consensus 44 ~~~~~~~~ii~ii~v~ii~~l~f 66 (72)
T PF12575_consen 44 KNFNWIILIISIIFVLIIVLLTF 66 (72)
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 34678888888777766665543
No 76
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=22.93 E-value=73 Score=31.08 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=19.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhcccC
Q 009436 12 VRRRLSCWIWALLGLFSIAGLVLFIVQHNH 41 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (535)
.-||+|+.+|+.+-+++-.|+.+.++.+.-
T Consensus 12 GSRr~SN~~wa~ii~~G~lGFll~G~sSYl 41 (180)
T PF02392_consen 12 GSRRFSNYFWAFIIFLGGLGFLLVGISSYL 41 (180)
T ss_pred ccchHHHHHHHHHHHHhhHHHHHhHHHHHh
Confidence 456777777777666666666666665543
No 77
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.44 E-value=6.3e+02 Score=24.64 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=52.2
Q ss_pred hhhHHHHHhHHHHHHHHH--HHHHhhCCchHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCCchHHHHHHHHHHHHHhcc
Q 009436 74 ATSFSRQLAEQIILAKAY--VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAM--RGEPITLDEAEPIISSLSSLIFTAQD 149 (535)
Q Consensus 74 ~~~~~~~~~d~~~~a~~y--~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (535)
.+..++.|.+++.-|+.= -.+|....-.+-..++...+.+.+.-.-.|-. +.+| -+.+..+....+..+...+.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edL--Ar~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDL--AREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 455666677776666552 22222222233333444444444433332222 2344 45555556666666655555
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHh
Q 009436 150 AHYDIATTIMTMKSHIQALEERANAAT 176 (535)
Q Consensus 150 ~~~d~~~~~~kl~~~~~~~e~~~~~~~ 176 (535)
..-....-+.+|+..+..+|.++...+
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666777777777776665553
No 78
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=22.34 E-value=2.5e+02 Score=25.18 Aligned_cols=70 Identities=19% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHHHHhhCCc--hHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhc----ccccchHHHHH
Q 009436 90 AYVIIAKEHNN--HRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQ----DAHYDIATTIM 159 (535)
Q Consensus 90 ~y~~~a~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~~~~ 159 (535)
||+.+-|.+|- ..=...|+.+.=|+-|-+-+-+..-.+-..++-...++..+..++.|- +-+.||.+++.
T Consensus 23 AYlqLRkAKGYMSVSEsdhLRdN~FeL~re~~~~s~~l~~h~d~eE~~aL~~A~~aLa~AaVCLMsGhHDCPtfia 98 (127)
T PRK12302 23 AYLQLRKAKGYMSVSESDHLRDNFFELNRELHDKSLRLNLHLDQEEWSALRHAEEALATAAVCLMSGHHDCPTFIA 98 (127)
T ss_pred HHHHHHHHcCccccchhhHHHHHHHHHHHHHHHhhHHHhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceee
Confidence 68777777761 111123445555554444444333222224444456677777777665 34789999864
No 79
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=22.15 E-value=64 Score=22.32 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=11.3
Q ss_pred chhhhhHHHHHHHHHHH
Q 009436 13 RRRLSCWIWALLGLFSI 29 (535)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (535)
|.++..|||+++++++.
T Consensus 2 rk~Lg~~~lAi~c~LL~ 18 (30)
T PF11466_consen 2 RKHLGGWWLAIVCVLLF 18 (30)
T ss_dssp -SS-SSHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHH
Confidence 56788888888876654
No 80
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=21.44 E-value=67 Score=29.04 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhc
Q 009436 106 ELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQ 148 (535)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (535)
+|+.+|+++||+|......++. --+-+..+++++.-++.++
T Consensus 1 klK~riRdieRLL~r~~Lp~~v--R~~~Er~L~~L~~~l~~~~ 41 (114)
T PF10153_consen 1 KLKKRIRDIERLLKRKDLPADV--RVEKERELEALKRELEEAE 41 (114)
T ss_pred CHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3789999999999877222222 2233446666666666554
No 81
>PHA02975 hypothetical protein; Provisional
Probab=21.27 E-value=1e+02 Score=25.43 Aligned_cols=23 Identities=17% Similarity=0.207 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhh
Q 009436 15 RLSCWIWALLGLFSIAGLVLFIV 37 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (535)
..+.|+|+++.++.++.+++|.+
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~f 62 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTF 62 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 45677888888777766666554
No 82
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=5.2e+02 Score=22.04 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHHHH
Q 009436 103 LAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMK 162 (535)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~ 162 (535)
-.-+|++-|..+||+ +.+-.........+-+.||..+||.+++-.-+|
T Consensus 12 a~~QLrafIerIERl------------EeEk~~i~~dikdvy~eakg~GFDvKa~r~iir 59 (85)
T COG3750 12 AAGQLRAFIERIERL------------EEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIR 59 (85)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 345788888888887 555666677888889999999999988755443
No 83
>PRK14156 heat shock protein GrpE; Provisional
Probab=21.07 E-value=2.1e+02 Score=27.78 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=19.4
Q ss_pred ccccccccccChhhHHHHHhHHHHHHHH
Q 009436 63 KVLNFTKEILSATSFSRQLAEQIILAKA 90 (535)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~ 90 (535)
+..+...+......-++.++|++..+.|
T Consensus 28 ~~~~~~~~l~~l~~e~~elkd~~lR~~A 55 (177)
T PRK14156 28 EETPEKSELELANERADEFENKYLRAHA 55 (177)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555667777788888877777
No 84
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.69 E-value=1.2e+02 Score=19.91 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 009436 105 WELSKKIRSCQLLLSKA 121 (535)
Q Consensus 105 ~~l~~~~~~~~~~~~~~ 121 (535)
..|+.+|+++|+-|++.
T Consensus 4 ~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 4 NRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56899999999988875
No 85
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=20.51 E-value=1.9e+02 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=23.3
Q ss_pred chHHHHHHHHHhCCC--------CCcEEEEEEeCCCCh
Q 009436 241 ATSVVVNSTITNADH--------PKQMVFHIVTNGVTY 270 (535)
Q Consensus 241 aasVvI~Siv~Ns~~--------p~~l~FhIvtD~l~~ 270 (535)
...-+|.|++...-. .+++.+.||.|+.+.
T Consensus 12 ~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d 49 (244)
T cd04190 12 ELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK 49 (244)
T ss_pred HHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc
Confidence 466788888876655 468999999999875
No 86
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=20.47 E-value=4.1e+02 Score=24.19 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=43.7
Q ss_pred ChhhHHHHHhHHHHHHH----HHHHHHhhCC------chHHH---HHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHH
Q 009436 73 SATSFSRQLAEQIILAK----AYVIIAKEHN------NHRLA---WELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISS 139 (535)
Q Consensus 73 ~~~~~~~~~~d~~~~a~----~y~~~a~~~~------~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (535)
+.|-..+-|-++||-|| ||+.+-|.+| +.+|- -||-..+++..-.|... + .++-...+..
T Consensus 2 ~Vdrl~~~LlnkLInAridLaAYLQLRkAKGYMSVSEsdhLRdn~FeLc~e~r~~~~~l~~~-----l--~~eE~~aL~~ 74 (127)
T PF10799_consen 2 SVDRLKRDLLNKLINARIDLAAYLQLRKAKGYMSVSESDHLRDNLFELCREMRDKAPRLKLH-----L--DPEEWEALRR 74 (127)
T ss_pred cHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCccccchhhhHHHHHHHHHHHHHHhhHhhhhh-----c--CHHHHHHHHH
Confidence 35666777888888886 6888888877 23221 12222222222222211 1 2333344555
Q ss_pred HHHHHHHhc----ccccchHHHHH
Q 009436 140 LSSLIFTAQ----DAHYDIATTIM 159 (535)
Q Consensus 140 ~~~~~~~~~----~~~~d~~~~~~ 159 (535)
.+..++.|- +-+.||.+++.
T Consensus 75 a~~a~a~AaVCLMsGhHDCP~~Ia 98 (127)
T PF10799_consen 75 AGEALASAAVCLMSGHHDCPTYIA 98 (127)
T ss_pred HHHHHHHHHHHHHcCCCCCCceee
Confidence 566665554 34789988763
No 87
>PRK05415 hypothetical protein; Provisional
Probab=20.43 E-value=87 Score=33.55 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=18.9
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHH
Q 009436 9 RRPVRRRLSCWIWALLGLFSIAGLVL 34 (535)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (535)
.||.|++|..|.|..+|+|+++++..
T Consensus 59 ~~p~r~~w~~~~~~~l~~l~~~~~~~ 84 (341)
T PRK05415 59 LRPKRSLWRKLLWGGLGLLGSLVVGQ 84 (341)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 46667888888888888777666543
Done!