Query 009436
Match_columns 535
No_of_seqs 287 out of 1363
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:09:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 1.6E-45 5.4E-50 372.3 16.5 259 228-529 4-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 7.7E-41 2.6E-45 342.5 18.6 251 230-523 1-269 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 1.6E-25 5.4E-30 231.9 15.9 228 228-525 3-256 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 1.7E-23 5.8E-28 210.2 13.2 208 233-510 9-225 (263)
5 1o7q_A N-acetyllactosaminide a 81.3 42 0.0014 33.6 15.5 122 347-480 132-263 (289)
6 3v1a_A Computational design, M 76.8 5.2 0.00018 29.6 5.4 38 81-118 6-43 (48)
7 1yzm_A FYVE-finger-containing 71.8 8.8 0.0003 28.7 5.7 40 80-119 6-45 (51)
8 1z0j_B FYVE-finger-containing 69.6 10 0.00035 29.2 5.7 41 80-120 13-53 (59)
9 1z0k_B FYVE-finger-containing 68.6 10 0.00034 30.2 5.7 40 80-119 24-63 (69)
10 1fo8_A Alpha-1,3-mannosyl-glyc 49.0 91 0.0031 31.7 10.5 40 336-375 80-121 (343)
11 3ioh_A Histo-blood group ABO s 41.4 2.9E+02 0.0098 27.7 12.9 120 348-479 142-271 (298)
12 4e61_A Protein BIM1; EB1-like 31.6 79 0.0027 27.1 5.6 39 132-170 43-101 (106)
13 4fla_A Regulation of nuclear P 21.8 59 0.002 29.4 3.3 13 100-112 88-100 (152)
14 1iap_A Guanine nucleotide exch 20.9 10 0.00034 36.4 -2.2 37 241-278 17-56 (211)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=1.6e-45 Score=372.28 Aligned_cols=259 Identities=17% Similarity=0.225 Sum_probs=189.4
Q ss_pred CceeEEEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhh
Q 009436 228 NLYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPI 305 (535)
Q Consensus 228 ~~ihiv~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pv 305 (535)
-.+|||+++|+ +.+++|+|+|++.|+++ ++++|||++++++.+..+.+.......+..|++..+++ ++
T Consensus 4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~-------- 73 (276)
T 3tzt_A 4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DL-------- 73 (276)
T ss_dssp -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HH--------
Confidence 35999999997 67999999999999986 57999999999998776655443333456677665542 10
Q ss_pred HHhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCCCcce
Q 009436 306 VKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHGNVNG 384 (535)
Q Consensus 306 l~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g~~ia 384 (535)
|. ..+ ..+++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+.+|
T Consensus 74 -------------~~-------~~~--~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~a 131 (276)
T 3tzt_A 74 -------------FS-------FAK--VTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILA 131 (276)
T ss_dssp --------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEE
T ss_pred -------------Hh-------cCc--cccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEE
Confidence 00 000 124678999999999999995 9999999999999999999999999999999
Q ss_pred eehhhhhh-hHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhh
Q 009436 385 AVETCLEA-FHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLA 463 (535)
Q Consensus 385 AV~dc~~~-f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~ 463 (535)
||+||... +.+... ..+++...|||||||||+||++||+.++++++++|++.+..... .+||+++|.+
T Consensus 132 av~d~~~~~~~~~~~---------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~--~~DQd~LN~~ 200 (276)
T 3tzt_A 132 AASHTGKTDMANNVN---------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLL--LPDQDILNAM 200 (276)
T ss_dssp EEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHH
T ss_pred EEEecccchHHHHHH---------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccccc--CCChhHHHHH
Confidence 99999743 111111 11344446999999999999999999999999999987664433 4789999999
Q ss_pred hccCeeeccc-cccccccCCC-Ccc---c----ccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCch
Q 009436 464 FYGLTEPLDR-RWHVLGLGYD-MNI---D----NRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYV 529 (535)
Q Consensus 464 F~~~i~~Ld~-~WN~~~~gy~-~~i---~----~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl 529 (535)
|.|++++||. +||++...+. +.. . .+..++|+||||+|+.|||...+.++|+++||+|.+..++++
T Consensus 201 f~~~~~~Lp~~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 201 YGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp HGGGEEEEEHHHHSEETTCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred HhCCEEECCchheeeecccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 9999999998 9999873210 000 1 124568999999999999999999999999999999887765
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=7.7e-41 Score=342.52 Aligned_cols=251 Identities=21% Similarity=0.286 Sum_probs=192.8
Q ss_pred eeEEEEeCC--CcchHHHHHHH-HHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhH
Q 009436 230 YHFCIFSDN--VPATSVVVNST-ITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 306 (535)
Q Consensus 230 ihiv~~sDn--vlaasVvI~Si-v~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl 306 (535)
||||+++|+ +.++.|+++|+ +.|++. +++|||++++++.+..+.+-......+.+|++..++.- +
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~~--~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-~--------- 68 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPDT--EIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-D--------- 68 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTTS--CCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-G---------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCCC--CceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-H---------
Confidence 699999996 67999999999 888754 59999999999988766544333323556666554320 0
Q ss_pred HhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceee
Q 009436 307 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV 386 (535)
Q Consensus 307 ~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV 386 (535)
|. +.+. +..++|..+|+||++|++||+++||||||+|+||++||++||++|++|+++|||
T Consensus 69 ------------~~-------~~~~-~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav 128 (311)
T 1g9r_A 69 ------------FA-------GFPL-NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGAS 128 (311)
T ss_dssp ------------GT-------TSCC-CCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEE
T ss_pred ------------Hh-------cCcc-ccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEE
Confidence 00 0110 125788899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhh-HhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhc
Q 009436 387 ETCLEAF-HRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFY 465 (535)
Q Consensus 387 ~dc~~~f-~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~ 465 (535)
+||.... ..+...++ +++..+||||||||+|+++||+.++++++.+|++.+.+... .+||+.+|.+|.
T Consensus 129 ~d~~~~~~~~~~~~~~---------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~--~~DQd~lN~~f~ 197 (311)
T 1g9r_A 129 IDLFVERQEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQ--YQDQDILNGLFK 197 (311)
T ss_dssp ECHHHHTSTTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCS--SHHHHHHHHHHT
T ss_pred eccchhhhHHHHHhcC---------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCc--cCCcCHHHHHHc
Confidence 9987431 11222222 34467899999999999999999999999999987654433 368889999999
Q ss_pred cCeeeccccccccccCCCC------cc---c-----ccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHh
Q 009436 466 GLTEPLDRRWHVLGLGYDM------NI---D-----NRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVN 523 (535)
Q Consensus 466 ~~i~~Ld~~WN~~~~gy~~------~i---~-----~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~ 523 (535)
+++.+||.+||++..++.. +. . ....++++||||+|+.|||...+.+++.++|..+.+
T Consensus 198 ~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~~ 269 (311)
T 1g9r_A 198 GGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269 (311)
T ss_dssp TSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHHH
T ss_pred CCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHHH
Confidence 9999999999998643210 00 0 122358899999999999999988888877776663
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.93 E-value=1.6e-25 Score=231.92 Aligned_cols=228 Identities=14% Similarity=0.177 Sum_probs=154.8
Q ss_pred CceeEEEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhh
Q 009436 228 NLYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPI 305 (535)
Q Consensus 228 ~~ihiv~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pv 305 (535)
+...|++++|+ +.++.|++.|+..|+++ ..++| +++++++.+..+.+-... . .+..++.+ .......
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~~l---~~~~~~~ 71 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----D--EVITVDIL---DSGDSAH 71 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----S--EEEECCTT---STTSTTH
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEeec---CCcchhh
Confidence 35678888875 67899999999999765 24666 677889887766544332 1 22222211 1000000
Q ss_pred HHhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCccee
Q 009436 306 VKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGA 385 (535)
Q Consensus 306 l~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaA 385 (535)
+.. + ..+ .+..+|.||++|++ ++++||||||+|+||.+||++||+++ .+||
T Consensus 72 ~~~--------------------~--~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aA 122 (333)
T 1ll2_A 72 LTL--------------------M--KRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSA 122 (333)
T ss_dssp HHH--------------------H--HCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEE
T ss_pred ccc--------------------c--ccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeE
Confidence 000 0 011 13578999999996 78999999999999999999999986 5788
Q ss_pred ehhhhhhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhc
Q 009436 386 VETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFY 465 (535)
Q Consensus 386 V~dc~~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~ 465 (535)
|.|++ + .+||||||||||++. ...+++.+++..+. .+..+||+.+|.+|.
T Consensus 123 v~d~~--------------------~---~~~fNsGvmlin~~~----~~~~~l~~~~~~~~---~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 123 APDPG--------------------W---PDCFNSGVFVYQPSV----ETYNQLLHVASEQG---SFDGGDQGLLNTFFN 172 (333)
T ss_dssp EECSS--------------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHTC---CTTSSHHHHHHHHTT
T ss_pred EecCC--------------------C---CcceeeeEEEEeCCH----HHHHHHHHHHHhcC---CCCCCCHHHHHHHHH
Confidence 87641 1 368999999999864 33455555555433 345589999999998
Q ss_pred cCe-----eeccccccccccC-CCCccc-ccccCCCeEEeccCCCCCcccCccC-----------------CCHHHHHHH
Q 009436 466 GLT-----EPLDRRWHVLGLG-YDMNID-NRLIESAAVIHFNGNMKPWLKLAIS-----------------RYKPIWDRY 521 (535)
Q Consensus 466 ~~i-----~~Ld~~WN~~~~g-y~~~i~-~~~i~~a~IIHy~G~~KPW~~~~~~-----------------~y~~~W~~Y 521 (535)
+.+ ..||.+||+.... |...-. ....++++||||+|..|||...+.+ .+.+.||.+
T Consensus 173 ~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~ 252 (333)
T 1ll2_A 173 SWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDI 252 (333)
T ss_dssp TTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHH
T ss_pred hhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHHH
Confidence 644 7999999998642 221000 1235689999999999999886432 346789988
Q ss_pred HhcC
Q 009436 522 VNHS 525 (535)
Q Consensus 522 ~~~~ 525 (535)
++..
T Consensus 253 ~~~~ 256 (333)
T 1ll2_A 253 FTTS 256 (333)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8653
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.90 E-value=1.7e-23 Score=210.23 Aligned_cols=208 Identities=15% Similarity=0.173 Sum_probs=140.5
Q ss_pred EEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhhh
Q 009436 233 CIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLL 310 (535)
Q Consensus 233 v~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l~ 310 (535)
.+++|+ +.++.|++.|+..++.+ .++++ +++++++.+..+.+-... . ++..++.++.-. ...++.
T Consensus 9 Tl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~~----~--~vi~V~~l~~~~---~~~~~~-- 75 (263)
T 3u2u_A 9 TLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETVF----D--EVIMVDVLDSGD---SAHLTL-- 75 (263)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHS----S--EEEECCCCCCCC---HHHHHH--
T ss_pred EEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHcC----C--eEEEeeecCCcc---hhhhhh--
Confidence 345564 67999999999998765 23443 567889887766543321 2 223332111000 000000
Q ss_pred ccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhh
Q 009436 311 NADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCL 390 (535)
Q Consensus 311 ~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~ 390 (535)
+..|.+ ..+|.|++++++. +++||||||+|++|.+||++||+++ .+|||.|.+
T Consensus 76 --------------------~~rp~~--~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~ 128 (263)
T 3u2u_A 76 --------------------MKRPEL--GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG 128 (263)
T ss_dssp --------------------TTCTTG--GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT
T ss_pred --------------------hcCcch--hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEeccCC
Confidence 001222 3578899999987 4899999999999999999999987 578887642
Q ss_pred hhhHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhcc----
Q 009436 391 EAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYG---- 466 (535)
Q Consensus 391 ~~f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~---- 466 (535)
. ..||||||||||++. ++.+++.++++.+. .+..+||+.+|.+|.+
T Consensus 129 --------------------~---~~~fNsGv~li~p~~----~~~~~l~~~~~~~~---~~~~~DQd~LN~~f~~w~~~ 178 (263)
T 3u2u_A 129 --------------------W---PDCFNSGVFVYQPSV----ETYNQLLHLASEQG---SFDGGDQGILNTFFSSWATT 178 (263)
T ss_dssp --------------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHHC---CTTSSHHHHHHHHTTTTTTS
T ss_pred --------------------C---CccccCeEEEEcccH----HHHHHHHHHHHhcC---CCCcccHHHHHHHhcccccc
Confidence 1 368999999999974 45566666665433 2456899999999987
Q ss_pred -Ceeecccccccccc-CCCCccc-ccccCCCeEEeccCCCCCcccCc
Q 009436 467 -LTEPLDRRWHVLGL-GYDMNID-NRLIESAAVIHFNGNMKPWLKLA 510 (535)
Q Consensus 467 -~i~~Ld~~WN~~~~-gy~~~i~-~~~i~~a~IIHy~G~~KPW~~~~ 510 (535)
.+++||..||+... .|...-. .+..++++||||+|..|||...+
T Consensus 179 ~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~ 225 (263)
T 3u2u_A 179 DIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTY 225 (263)
T ss_dssp CGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEE
T ss_pred CeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCCCCC
Confidence 78999999999853 2321100 12357899999999999998753
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=81.31 E-value=42 Score=33.60 Aligned_cols=122 Identities=12% Similarity=0.035 Sum_probs=70.2
Q ss_pred hcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhhccC---CCccccc--CCCCCCCceeee
Q 009436 347 IPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNF---SNPIISS--KFDPQACGWAFG 421 (535)
Q Consensus 347 LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~ln~---s~p~i~~--~f~~~~~yfNSG 421 (535)
..+++-++|-+.++|+|+++++++..= .| |..+|....-.- .+ ..-.| .+|.-.. +++.+..|+.+|
T Consensus 132 ~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y--~~--~~~~fpYERrp~S~AyIp~~eGdfYY~Ga 203 (289)
T 1o7q_A 132 VAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWY--KA--DPNDFTYERRKESAAYIPFGEGDFYYHAA 203 (289)
T ss_dssp HHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTT--TS--CGGGSCCCCCTTSTTCCCTTCCSCCEEEE
T ss_pred HHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHh--CC--CCCCCCCCCCcCceeeecCCCCCEEEEce
Confidence 355677899999999999999988641 12 456666543211 00 00011 1121111 356788999999
Q ss_pred eeeeechHHHHHhHHHHHHHHHH---HcCCccccccCCCCHHHh--hhccCeeecccccccccc
Q 009436 422 MNAFDLIAWRKANVTARYHYWQE---QNADRTLWKLGTLPPALL--AFYGLTEPLDRRWHVLGL 480 (535)
Q Consensus 422 VmLinL~~WR~~~it~~~~~~~~---~n~d~~l~~~gdl~~~nl--~F~~~i~~Ld~~WN~~~~ 480 (535)
++==-..+-- ++++.|+.-+. .|+=...|.+- .-+|- .....++.|++.|.+...
T Consensus 204 ~fGGt~~~vl--~l~~~c~~~i~~D~~n~I~A~wHDE--SHLNKYf~~~KPtKvLSPEY~wd~~ 263 (289)
T 1o7q_A 204 IFGGTPTQVL--NITQECFKGILKDKKNDIEAQWHDE--SHLNKYFLLNKPTKILSPEYCWDYH 263 (289)
T ss_dssp EEEECHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHH--HHHHHHHHHSCCSEEECGGGSBCGG
T ss_pred eeCCcHHHHH--HHHHHHHHHHHHHHhCCeEEEecch--hhhhHHHhhcCCCEEECHHHCCCcc
Confidence 8855554433 36777766442 23333456432 22333 334567889999887653
No 6
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=76.82 E-value=5.2 Score=29.61 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHh
Q 009436 81 LAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLL 118 (535)
Q Consensus 81 ~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~ 118 (535)
|+.|+++.+.|..-||..+.-.=+.-|..+++|+++-+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999888888999999987643
No 7
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=71.83 E-value=8.8 Score=28.74 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhh
Q 009436 80 QLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLS 119 (535)
Q Consensus 80 ~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~ 119 (535)
=|.+|+++.++|..-||..+...=+.-|..+++|+++-+-
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~ 45 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999998888889999999886554
No 8
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=69.59 E-value=10 Score=29.20 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhh
Q 009436 80 QLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSK 120 (535)
Q Consensus 80 ~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~ 120 (535)
-|..|+++.++|.--||..+...=+.-|..+++|++.-+..
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~ 53 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAK 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999988888899999999876543
No 9
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=68.56 E-value=10 Score=30.18 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhh
Q 009436 80 QLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLS 119 (535)
Q Consensus 80 ~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~ 119 (535)
=|.+|+++.++|..-||..+...=+.-|..+++|+++-+-
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999888899999999987654
No 10
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=48.95 E-value=91 Score=31.73 Aligned_cols=40 Identities=25% Similarity=0.525 Sum_probs=30.5
Q ss_pred cchhhhHHHHhhccccc--CCCeEEEEecCeeeccCChhhhc
Q 009436 336 YLSLLNHLRFYIPEIYP--QLEKIVFLDDDVVVQKDLTPLFS 375 (535)
Q Consensus 336 ~lS~~~y~Rf~LPellP--~ldKVLYLD~DvVV~~DLseLw~ 375 (535)
|..+..+++--+-.+|. ..++||+||+|+++--|.=+.++
T Consensus 80 y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred chhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 34455666777777776 58999999999999998765543
No 11
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=41.35 E-value=2.9e+02 Score=27.72 Aligned_cols=120 Identities=11% Similarity=0.072 Sum_probs=63.2
Q ss_pred cccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhhccC---CCccccc--CCCCCCCceeeee
Q 009436 348 PEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNF---SNPIISS--KFDPQACGWAFGM 422 (535)
Q Consensus 348 PellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~ln~---s~p~i~~--~f~~~~~yfNSGV 422 (535)
-.++-++|-+.++|+|+++++++.. +.=|..+|....-. +.. ..-.| .+|.-.. +++.+..|+.+|+
T Consensus 142 ~~~~~EvDyLfc~dvd~~F~~~vG~----E~Lg~lva~lHp~~--y~~--~~~~FpYERrp~S~AyIp~~eGdfYY~ga~ 213 (298)
T 3ioh_A 142 RRFLSEVDYLVCVDVDMEFRDHVGV----EILTPLFGTLHPGF--YGS--SREAFTYERRPQSQAYIPKDEGDFYYGGAF 213 (298)
T ss_dssp HTHHHHCSEEEEEESSEEECSCBCG----GGCSSEEEEBCTTT--TTS--CGGGSCCCCCTTSTTCCCTTCCSCCBCTTE
T ss_pred HHHhhcCCEEEEecCCCeeccCccH----HHhHhhHhhcChhh--hcC--CcccCcccCCccccccccCCCCCeEEeeee
Confidence 3466679999999999999998763 11133445443211 000 00011 1121111 2456777887777
Q ss_pred eeeechHHHHHhHHHHHHHHHH---HcCCccccccCCCCHHHh--hhccCeeeccccccccc
Q 009436 423 NAFDLIAWRKANVTARYHYWQE---QNADRTLWKLGTLPPALL--AFYGLTEPLDRRWHVLG 479 (535)
Q Consensus 423 mLinL~~WR~~~it~~~~~~~~---~n~d~~l~~~gdl~~~nl--~F~~~i~~Ld~~WN~~~ 479 (535)
+==-..+-. ++++.|+.-+. .|+=...|.+- .-+|- ..+..++.|++.|++..
T Consensus 214 fGGt~~~vl--~Lt~~C~~~i~~D~~n~IeA~WhDE--SHLNKYfl~hKPtKvLSPEY~Wd~ 271 (298)
T 3ioh_A 214 FGGSVQEVQ--RLTRACHQAMMVDQANGIEAVWHDE--SHLNKYLLRHKPTKVLSPEYLWDQ 271 (298)
T ss_dssp EEEEHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHH--HHHHHHHHHSCCSEEECGGGSBCH
T ss_pred cCCcHHHHH--HHHHHHHHHHHHHHhCCceEeccch--hhhhhhhhhcCCCceeCHHHcCCc
Confidence 633333222 35666665432 23334566432 22333 33455889999988754
No 12
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.62 E-value=79 Score=27.05 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHhccc--------------------ccchHHHHHHHHHHHHHHHH
Q 009436 132 EAEPIISSLSSLIFTAQDA--------------------HYDIATTIMTMKSHIQALEE 170 (535)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--------------------~~d~~~~~~kl~~~~~~~e~ 170 (535)
+--.|++..|.++-.+... .-+-..+++|+.++|++|||
T Consensus 43 FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYaTee 101 (106)
T 4e61_A 43 FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhcccc
Confidence 3456777777777666442 11244678999999999997
No 13
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.78 E-value=59 Score=29.43 Aligned_cols=13 Identities=46% Similarity=0.514 Sum_probs=6.3
Q ss_pred chHHHHHHHHHHH
Q 009436 100 NHRLAWELSKKIR 112 (535)
Q Consensus 100 ~~~~~~~l~~~~~ 112 (535)
|..|..|++.|.+
T Consensus 88 n~rL~~E~~dR~~ 100 (152)
T 4fla_A 88 NGRLAAELEDRRQ 100 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555544
No 14
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=20.88 E-value=10 Score=36.35 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhCCCCCcEEEEEEeC---CCChHHHHHhhh
Q 009436 241 ATSVVVNSTITNADHPKQMVFHIVTN---GVTYGAMQAWFL 278 (535)
Q Consensus 241 aasVvI~Siv~Ns~~p~~l~FhIvtD---~l~~~~mk~wf~ 278 (535)
+++|.++=++.|+ +|..+-||++|| ..|..+|++||.
T Consensus 17 HLaVFL~yV~sq~-DPspLLfYL~tdlYk~~~~Ke~rk~~~ 56 (211)
T 1iap_A 17 HLMALLQHVALQF-EPGPLLCCLHADMLGSLGPKEAKKAFL 56 (211)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CchhhHHHHHHHHHhccChHHHHHHHH
Confidence 6889999999988 788999999998 678999999974
Done!